HHsearch alignment for GI: 254780856 and conserved domain: pfam01257
>pfam01257 Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 Kd subunit.
Probab=100.00 E-value=0 Score=358.84 Aligned_cols=145 Identities=50% Similarity=0.883 Sum_probs=142.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
Q ss_conf 99999867843213369999999999826689999999998508879999999976443202227870699961883587
Q gi|254780856|r 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 (218)
Q Consensus 26 i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~ 105 (218)
T Consensus 1 i~~ii~~y~~--~~~~ll~~L~~iQ~~~Gyip~~~~~~iA~~l~v~~~~V~~v~tFY~~f~~~p~g-k~~i~VC~~~~C~ 77 (145)
T pfam01257 1 IDEIIAKYPR--KRSALIPLLHLAQEQYGYLPDEAIEYIAELLGIPPARVYEVATFYSMFNLKPVG-KYHIQVCTTTPCH 77 (145)
T ss_pred CHHHHHHCCC--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-CEEEEECCCCHHH
T ss_conf 9788966799--878999999999998499699999999999888999999999864220336899-6389985980466
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHHH
Q ss_conf 70892489999988275647517788189995324566778867998583414588989999999998
Q gi|254780856|r 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 (218)
Q Consensus 106 l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~~Lr 173 (218)
T Consensus 78 ~~Ga~~l~~~l~~~lgi~~gett~Dg~ftle~~~ClG~C~~AP~~~Vn~~~~~~lt~~k~~~il~~lr 145 (145)
T pfam01257 78 LRGSDELLEALEEKLGIKPGETTPDGKFTLEEVECLGACGNAPVMQINDDYYGDLTPEKVDEILEALK 145 (145)
T ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHCC
T ss_conf 67889999999997199878647997189997140572489996999999767899999999999729