HHsearch alignment for GI: 254780856 and conserved domain: pfam01257

>pfam01257 Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 Kd subunit.
Probab=100.00  E-value=0  Score=358.84  Aligned_cols=145  Identities=50%  Similarity=0.883  Sum_probs=142.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
Q ss_conf             99999867843213369999999999826689999999998508879999999976443202227870699961883587
Q gi|254780856|r   26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM  105 (218)
Q Consensus        26 i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~VC~~~~C~  105 (218)
T Consensus         1 i~~ii~~y~~--~~~~ll~~L~~iQ~~~Gyip~~~~~~iA~~l~v~~~~V~~v~tFY~~f~~~p~g-k~~i~VC~~~~C~   77 (145)
T pfam01257         1 IDEIIAKYPR--KRSALIPLLHLAQEQYGYLPDEAIEYIAELLGIPPARVYEVATFYSMFNLKPVG-KYHIQVCTTTPCH   77 (145)
T ss_pred             CHHHHHHCCC--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-CEEEEECCCCHHH
T ss_conf             9788966799--878999999999998499699999999999888999999999864220336899-6389985980466


Q ss_pred             HHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHHH
Q ss_conf             70892489999988275647517788189995324566778867998583414588989999999998
Q gi|254780856|r  106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS  173 (218)
Q Consensus       106 l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y~~lt~e~~~~il~~Lr  173 (218)
T Consensus        78 ~~Ga~~l~~~l~~~lgi~~gett~Dg~ftle~~~ClG~C~~AP~~~Vn~~~~~~lt~~k~~~il~~lr  145 (145)
T pfam01257        78 LRGSDELLEALEEKLGIKPGETTPDGKFTLEEVECLGACGNAPVMQINDDYYGDLTPEKVDEILEALK  145 (145)
T ss_pred             HCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHCC
T ss_conf             67889999999997199878647997189997140572489996999999767899999999999729