BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] (218 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 218 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/218 (100%), Positives = 218/218 (100%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA Sbjct: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI Sbjct: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 >gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 203 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/202 (86%), Positives = 188/202 (93%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA Sbjct: 1 MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI Sbjct: 61 IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 RPGPQIDRISSAPAGGLTSL++ Sbjct: 181 RPGPQIDRISSAPAGGLTSLVE 202 >gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894] Length = 322 Score = 340 bits (873), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 182/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDRI SAP GGLTSL K + + KK D Sbjct: 181 KPGTQIDRIFSAPEGGLTSLTTEEPKAKTRAKKTD 215 >gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42] gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] Length = 385 Score = 340 bits (871), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDRI SAP GG TSL K R + KK D Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215 >gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512] Length = 385 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDRI SAP GG TSL K R + KK D Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215 >gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 388 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDR+ SAP GGLTSL K R + KK D Sbjct: 181 KPGTQIDRVFSAPEGGLTSLTTEEPKARTRAKKAD 215 >gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae 3841] gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium leguminosarum bv. viciae 3841] Length = 388 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+++A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDR+ SAP GG TSL K R + KK D Sbjct: 181 KPGTQIDRVFSAPEGGPTSLTTEEPKVRARAKKAD 215 >gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 388 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 180/215 (83%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDRI SAP GG TSL K R + KK D Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215 >gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium radiobacter K84] gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium radiobacter K84] Length = 381 Score = 330 bits (847), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 147/213 (69%), Positives = 180/213 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+F++E+A+W + I +YP R QSA+IPL+MRAQEQEGWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMA+IR LE+ATFYTQFQL+PVGT+AH+QVCGTTPCMLRG E L++VC++KI Sbjct: 61 IETIADMLDMAHIRALEVATFYTQFQLNPVGTKAHIQVCGTTPCMLRGAEGLVKVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + RN+DGTLSWEEVECQGACVNAPMV+IGKDTYEDLTPERLEEIIDAFS G+G + Sbjct: 121 NGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFSAGEGSKV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 GPQIDR+ SAP GGLTSL K + K Sbjct: 181 PTGPQIDRVFSAPEGGLTSLTTEAPKAKSASGK 213 >gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1] gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1] Length = 345 Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 150/204 (73%), Positives = 172/204 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+VRRLA+E QP F+F+ E+ W + I +YPP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MAVRRLADEAVQPQGFAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +LDM IRVLE+ATFYTQFQL+PVGTRAHVQVCGTTPCMLRG LIEVC+++I Sbjct: 61 IEHVAKMLDMPLIRVLEVATFYTQFQLAPVGTRAHVQVCGTTPCMLRGAGDLIEVCKSRI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P H N GTLSWEEVECQGACVNAPM+MI KD+YEDLTPERLEEIIDAF G+GDTI Sbjct: 121 HPEPFHTNEGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 +PG QIDR++SAPA GLTSL D + Sbjct: 181 KPGTQIDRLTSAPASGLTSLTDES 204 >gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58] gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens str. C58] Length = 369 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 148/202 (73%), Positives = 170/202 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI Sbjct: 61 IEKVADMLDMAYIRVLEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+ Sbjct: 121 HHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 + GPQIDR S P GGLT+L + Sbjct: 181 KTGPQIDRHESVPVGGLTTLTE 202 >gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3] gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3] Length = 369 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 146/202 (72%), Positives = 170/202 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI Sbjct: 61 IEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+ Sbjct: 121 HHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 + GPQIDR S P GGLT+L + Sbjct: 181 KTGPQIDRHQSVPVGGLTTLTE 202 >gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4] gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4] Length = 266 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 148/208 (71%), Positives = 176/208 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP+SF+FSEE+A+W I +YP R QSAVIPLLMRAQEQ+GWV++A Sbjct: 1 MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA+ LDM YIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+L+++C+ KI Sbjct: 61 IEFVADKLDMPYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELMKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +PL RNS GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIIDAF G+G + Sbjct: 121 HPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFEAGKGVEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 + GPQI+R+ SAP GGLTSL + + R Sbjct: 181 KTGPQIERVFSAPEGGLTSLTEEITPVR 208 >gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3] Length = 195 Score = 323 bits (829), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 146/195 (74%), Positives = 171/195 (87%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAG 195 +PG QIDRI SAP G Sbjct: 181 KPGTQIDRIFSAPEG 195 >gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021] gi|307301094|ref|ZP_07580863.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] gi|8473988|sp|P56909|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName: Full=NADH dehydrogenase I subunit E 1; AltName: Full=NDH-1 subunit E 1 gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021] gi|306904049|gb|EFN34635.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] Length = 275 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 150/221 (67%), Positives = 175/221 (79%), Gaps = 5/221 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180 Query: 181 RPGPQIDRISSAPAGGLTSL-----LDNNSKKRGKKKKDDK 216 PGPQIDR+ SAP GGLT+L ++ R K KD++ Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKSVRASKAKDEQ 221 >gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234] gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234] Length = 276 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 148/210 (70%), Positives = 171/210 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I++YP R QSA+IPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L MAYIR LE+ATFYTQFQL PVG+RAHVQVCGTTPCMLRG E LI+VC+ KI Sbjct: 61 IESIADMLGMAYIRALEVATFYTQFQLKPVGSRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P N GTLSWEEVECQGACVNAPMVMI KD+YEDLTPERLEEIID F G+G I Sbjct: 121 AADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFDAGKGAEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 PGPQIDRI SAPAGGLT+L + +R K Sbjct: 181 EPGPQIDRIYSAPAGGLTTLQLVEAPQRTK 210 >gi|307317828|ref|ZP_07597266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti] gi|306896590|gb|EFN27338.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] Length = 276 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 150/222 (67%), Positives = 174/222 (78%), Gaps = 6/222 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLL------DNNSKKRGKKKKDDK 216 PGPQIDR+ SAP GGLT+L + R K KD++ Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKKPVRASKAKDEQ 222 >gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419] gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae WSM419] Length = 273 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/219 (68%), Positives = 173/219 (78%), Gaps = 3/219 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI Sbjct: 61 IEKIADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 AGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFEAGKGTDV 180 Query: 181 RPGPQIDRISSAPAGGLTSL---LDNNSKKRGKKKKDDK 216 PGPQIDRI SAP GGLT+L + R K K+++ Sbjct: 181 VPGPQIDRIYSAPIGGLTTLQAPAEEKKPARASKAKEEQ 219 >gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941] gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str. 9-941] Length = 237 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 141/208 (67%), Positives = 172/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S PA GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M] gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330] gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus 2308] gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840] gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365] gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445] gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19] gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo] gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308 A] gi|254689062|ref|ZP_05152316.1| NADH dehydrogenase subunit E [Brucella abortus bv. 6 str. 870] gi|254693544|ref|ZP_05155372.1| NADH dehydrogenase subunit E [Brucella abortus bv. 3 str. Tulya] gi|254697196|ref|ZP_05159024.1| NADH dehydrogenase subunit E [Brucella abortus bv. 2 str. 86/8/59] gi|254701574|ref|ZP_05163402.1| NADH dehydrogenase subunit E [Brucella suis bv. 5 str. 513] gi|254704121|ref|ZP_05165949.1| NADH dehydrogenase subunit E [Brucella suis bv. 3 str. 686] gi|254706979|ref|ZP_05168807.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M163/99/10] gi|254709914|ref|ZP_05171725.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94] gi|254713915|ref|ZP_05175726.1| NADH dehydrogenase subunit E [Brucella ceti M644/93/1] gi|254717027|ref|ZP_05178838.1| NADH dehydrogenase subunit E [Brucella ceti M13/05/1] gi|254718915|ref|ZP_05180726.1| NADH dehydrogenase subunit E [Brucella sp. 83/13] gi|254730092|ref|ZP_05188670.1| NADH dehydrogenase subunit E [Brucella abortus bv. 4 str. 292] gi|256031407|ref|ZP_05445021.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M292/94/1] gi|256044485|ref|ZP_05447389.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. Rev.1] gi|256060918|ref|ZP_05451076.1| NADH dehydrogenase subunit E [Brucella neotomae 5K33] gi|256159528|ref|ZP_05457296.1| NADH dehydrogenase subunit E [Brucella ceti M490/95/1] gi|256254815|ref|ZP_05460351.1| NADH dehydrogenase subunit E [Brucella ceti B1/94] gi|256257311|ref|ZP_05462847.1| NADH dehydrogenase subunit E [Brucella abortus bv. 9 str. C68] gi|256369238|ref|YP_003106746.1| ATP synthase subunit E [Brucella microti CCM 4915] gi|260168541|ref|ZP_05755352.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026] gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196] gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653] gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2] gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1] gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str. 16M] gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330] gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840] gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365] gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445] gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus S19] gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo] gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308 A] gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915] gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026] gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196] gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1] gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2] gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653] Length = 237 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 141/208 (67%), Positives = 172/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S PA GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457] gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC 23457] gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28] gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90] Length = 237 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 144/210 (68%), Positives = 173/210 (82%), Gaps = 1/210 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLL-DNNSKKRG 209 +PGPQ R++S PA GLT+L D + KK G Sbjct: 181 KPGPQDGRVTSEPASGLTALTKDLDYKKIG 210 >gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup] gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup] Length = 217 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 146/208 (70%), Positives = 169/208 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R SS P GLTSL+D+ +K+ Sbjct: 181 AVGPQSSRKSSEPISGLTSLIDDEKEKK 208 >gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3] Length = 225 Score = 310 bits (794), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 147/204 (72%), Positives = 166/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGRGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204 >gi|256113341|ref|ZP_05454199.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 3 str. Ether] gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 310 bits (794), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 140/208 (67%), Positives = 171/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 + GPQ R++S PA GLT+L ++ K+ Sbjct: 181 KSGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1] gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str. Houston-1] Length = 222 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 167/206 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEIATFYTQFQLQPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N DG+LSWEEVEC GACVNAPMVMI KDTYEDLT +RLEEIIDAF G+G I Sbjct: 121 HHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFEAGKGAEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 GPQ R SS P GLTSL+D + Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDEKEQ 206 >gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73] gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73] Length = 225 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 147/204 (72%), Positives = 166/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAELLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204 >gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium LMG 3301] gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium LMG 3301] Length = 377 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 141/208 (67%), Positives = 170/208 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W + I+++P R QSAVIPLLMRAQEQ+GWV++AA Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEHVAAMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+ Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQIDR +S P GLTSL + K+ Sbjct: 181 KPGPQIDRETSNPLNGLTSLTEELDYKK 208 >gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476] gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476] Length = 223 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/203 (71%), Positives = 167/203 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG ++LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSDELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFGAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 GPQ R SS P GLTSLL++ Sbjct: 181 AVGPQNSRQSSEPISGLTSLLED 203 >gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188] gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 138/208 (66%), Positives = 171/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I+++P R QSAVIPLLMRAQEQ+GWV++AA Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEHVAGMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+ Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S P GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPINGLTALTEDLDYKK 208 >gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C] Length = 223 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 146/204 (71%), Positives = 164/204 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204 >gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC BAA-1498] Length = 225 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 146/204 (71%), Positives = 164/204 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204 >gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130] gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130] Length = 422 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 144/220 (65%), Positives = 171/220 (77%), Gaps = 4/220 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP +F FS+ + W + I YP R SAVIPLLMRAQEQEGWV++AA Sbjct: 1 MSVRRLADETVQPDAFKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L M IRVLE+ATFYTQFQL+PVG RAHVQVCGTTPCMLRG ++++VC+ +I Sbjct: 61 IEHIAEMLGMPLIRVLEVATFYTQFQLAPVGKRAHVQVCGTTPCMLRGAGEIMDVCKKRI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP + DG LSWEEVECQGACVNAPMVM+ KD+YEDLT ER+EEIIDAF G GD+I Sbjct: 121 APKPFELSEDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN----NSKKRGKKKKDDK 216 PGPQIDRI SAP GGLTSL ++ ++K GK KK +K Sbjct: 181 PPGPQIDRIYSAPIGGLTSLTEDPTLKGARKTGKGKKAEK 220 >gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse] gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse] Length = 216 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 144/203 (70%), Positives = 166/203 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+Q+CGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLQPVGTKAHIQICGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 GPQ R SS P GLTSL+D+ Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDD 203 >gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1] Length = 217 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 145/204 (71%), Positives = 163/204 (79%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEYVAQMLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+ I Sbjct: 121 HSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKNSDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ R SS P GLTSL+D N Sbjct: 181 AVGPQNGRKSSEPINGLTSLIDEN 204 >gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans SI85-9A1] Length = 488 Score = 303 bits (776), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 139/200 (69%), Positives = 160/200 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ FQP F+F++E+A W I +YP R QSAVIPLLMRAQ+QEGWV++AA Sbjct: 1 MSVRRLADDAFQPHGFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQDQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L VCR+KI Sbjct: 61 IEHVADMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGAEDLKAVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P HRN GTLSWEEVEC GACVNAPMVMI D YEDLTPERLEEIID F G+G + Sbjct: 121 HAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPERLEEIIDEFEAGRGGDV 180 Query: 181 RPGPQIDRISSAPAGGLTSL 200 + GPQ R S P GGLT+L Sbjct: 181 KTGPQNGRHESVPIGGLTTL 200 >gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506] gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506] Length = 500 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/214 (65%), Positives = 164/214 (76%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP SF+F++E+A W + + +YP R QSAVIPLLMRAQ+QEGWV++AA Sbjct: 1 MSVRRLADDSIQPQSFAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +E VA+ L M IRVLE+ATFYTQF L P+GTRAHVQVCGTTPCMLRG E L VC+ KI Sbjct: 61 VEHVADRLKMPLIRVLEVATFYTQFMLQPIGTRAHVQVCGTTPCMLRGAEDLKAVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P HRNS GTLSWEEVECQGACVNAPMVMI KD YEDLTPERLEEIID F G G + Sbjct: 121 HPVPFHRNSSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAGNGANV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 GPQ R S P GGLTSL ++ K+K++ Sbjct: 181 TTGPQNGRHQSVPIGGLTSLTEDYGDLIAKQKRE 214 >gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43] gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43] Length = 395 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/220 (65%), Positives = 163/220 (74%), Gaps = 2/220 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAEE QP+ F+F+ E A I +YP R QSAVIPLLM AQEQ+GWV++ A Sbjct: 1 MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L M YIR LE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E+L+EVCR+KI Sbjct: 61 IETIADMLGMPYIRALEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEELMEVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P H N GTLSWEEVECQGACVNAPMVMI KD YEDLTPERL IID F G+ + I Sbjct: 121 HPEPFHLNESGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLAYIIDRFDAGRPEDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLD--NNSKKRGKKKKDDKIS 218 GPQI R SAPA GLTSL + KR K K S Sbjct: 181 NTGPQIKRTFSAPASGLTSLTEEIKPGSKRAAKSTKAKAS 220 >gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583] gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis KC583] Length = 225 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 139/204 (68%), Positives = 163/204 (79%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L MAYIRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG +LI++C+ KI Sbjct: 61 IEHIAQMLSMAYIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSTELIKICQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF +G + Sbjct: 121 HPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEANKGFEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ R SS P GLTSL++ + Sbjct: 181 AVGPQNSRKSSEPINGLTSLINED 204 >gi|260462234|ref|ZP_05810478.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum WSM2075] gi|259032094|gb|EEW33361.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum WSM2075] Length = 426 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 159/205 (77%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVM+ KDT+EDLTPERL EIID + G+G ++ Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205 PGPQ R S PA GLT+L + + Sbjct: 181 APGPQNGRTGSEPATGLTTLKNEKA 205 >gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2] gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2] Length = 212 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 133/214 (62%), Positives = 167/214 (78%), Gaps = 5/214 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP+SF F++E+ W + I++YP R QSAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKELQPASFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L MA+IRV+EIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++ Sbjct: 61 AIRAVADLLGMAHIRVMEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G + Sbjct: 121 IHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSL--LDNNSKKRGKK 211 +PGPQIDR +AP GG L + +++ K+GKK Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLQEVGDDATKKGKK 212 >gi|209885056|ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] Length = 250 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/211 (62%), Positives = 160/211 (75%), Gaps = 3/211 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA +E QP SF F++E+ W + I ++PP R QSAVIP+L R QEQ EGWVS A Sbjct: 1 MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L MA+IRVLEIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++ Sbjct: 61 AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++ G+ Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFAS--GNP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 +PGPQIDR +AP GG L D + G+ Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLKDITASGDGR 209 >gi|190891290|ref|YP_001977832.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652] gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli CIAT 652] Length = 339 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 126/169 (74%), Positives = 142/169 (84%) Query: 47 MRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML 106 MRAQEQ+GWV+RAAIE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCML Sbjct: 1 MRAQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCML 60 Query: 107 RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLE 166 RG E L+ VC++KIH P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLE Sbjct: 61 RGSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLE 120 Query: 167 EIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 EIID F+ G G +I+PG QIDRI SAP GG TSL + K R + KK D Sbjct: 121 EIIDTFAAGNGASIKPGTQIDRIFSAPEGGPTSLTTDEPKARTRAKKAD 169 >gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099] gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti MAFF303099] Length = 424 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 131/200 (65%), Positives = 156/200 (78%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPVSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G ++ Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASV 180 Query: 181 RPGPQIDRISSAPAGGLTSL 200 PGPQ R S PA GLT+L Sbjct: 181 APGPQNGRTGSEPASGLTTL 200 >gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 426 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 130/200 (65%), Positives = 156/200 (78%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+K+ Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKV 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G + Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAV 180 Query: 181 RPGPQIDRISSAPAGGLTSL 200 PGPQ R S PA GLT+L Sbjct: 181 EPGPQNGRTGSEPASGLTTL 200 >gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] Length = 228 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/213 (59%), Positives = 157/213 (73%), Gaps = 3/213 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I +YP R SA I +L RAQEQ +GWVS A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+N+ Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQIDR SAP GG T+L +K G ++ Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGQR 211 >gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1] gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1] Length = 203 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/201 (63%), Positives = 153/201 (76%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA ++ QP+SF+F+EE+ + I++YP R SAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA++L M YIRVLE+ATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++ Sbjct: 61 AIRVVADMLGMPYIRVLEVATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG T Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGNLPT 180 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 PGPQ R SAPAGG T+L Sbjct: 181 --PGPQNGRQFSAPAGGPTTL 199 >gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] Length = 251 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/213 (58%), Positives = 157/213 (73%), Gaps = 3/213 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++ Sbjct: 61 AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++ G+ Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFAS--GNP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQIDR SAP GG T+L +K G ++ Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGRR 211 >gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS278] gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) (NDH-1, chain E) [Bradyrhizobium sp. ORS278] Length = 203 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 128/201 (63%), Positives = 153/201 (76%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP+SF+F++++ + I++YP R SAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA++L M YIRVLEIATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++ Sbjct: 61 AIRVVADMLGMPYIRVLEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG T Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGNLPT 180 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 PGPQ R SAPAGG T+L Sbjct: 181 --PGPQNGRQFSAPAGGPTTL 199 >gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] Length = 250 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 156/210 (74%), Gaps = 6/210 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++ Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 +PGPQIDR SAP GG T+L N+ +G Sbjct: 179 PKPGPQIDRQFSAPVGGPTTL---NTAAKG 205 >gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53] gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisA53] Length = 249 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/213 (58%), Positives = 154/213 (72%), Gaps = 5/213 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA +E QP SF+F++E+ W ++ +++YPP R SAVI ++ RAQEQ GW+S A Sbjct: 1 MAVRRLAPKELQPESFAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+ Sbjct: 61 AIRAVADLLDMPHIRALEIATFYTMFQLHPVGRKAHVQVCGTTPCRLRGAEDIIKVCQNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMVMIGKDTYEDLTPE +++D G G Sbjct: 121 IHHDPSHLSADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGI--GSGHP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNN--SKKRGK 210 +PGPQ R +AP GG L D S GK Sbjct: 179 PKPGPQGGRQFAAPEGGPRVLKDGGGPSASHGK 211 >gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110] gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/201 (61%), Positives = 154/201 (76%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP+SF+F+EE+ + + I++YP R SAVI +L RAQEQ +GWVS A Sbjct: 1 MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V+A++LDM YIRVLE+ATFYT FQL+PVG +AHVQVCGTTPC LRG E LI VC ++ Sbjct: 61 AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC GACVNAPMV+IGKDTYEDLT E +++D F++ G+ Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS--GNP 178 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 +PGPQ R SAP G T+L Sbjct: 179 PKPGPQNGRQFSAPITGPTTL 199 >gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009] gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1] gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris CGA009] gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris TIE-1] Length = 249 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/201 (60%), Positives = 149/201 (74%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ GW+ A Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+ Sbjct: 61 AIRTVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F++G T Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASGNPPT 180 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 PGPQ R +AP G T+L Sbjct: 181 --PGPQNGRQHAAPMTGPTTL 199 >gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18] gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisB18] Length = 265 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 118/197 (59%), Positives = 147/197 (74%), Gaps = 3/197 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RA EQ GW++ A Sbjct: 15 MAVRRLAPKELQPESFAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEA 74 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+ Sbjct: 75 AIRAVADLLQMPHIRALEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEDIIKVCKNR 134 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H ++DG SWEEVEC G+CVNAPMVMI KDTYEDLTPE +++D F++G T Sbjct: 135 IHHEPFHLSADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASGNFPT 194 Query: 180 IRPGPQIDRISSAPAGG 196 PGPQ R +AP GG Sbjct: 195 --PGPQNGRQFAAPEGG 209 >gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2] gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris HaA2] Length = 249 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 119/201 (59%), Positives = 152/201 (75%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP SF+F+EE+ W I++YPP+R SAVI ++ RAQEQ GW+ A Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V++++L+M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++ Sbjct: 61 AIRVISDMLEMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F+ G+ Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAA--GNP 178 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 +PGPQ R +AP G T+L Sbjct: 179 PKPGPQNGRQYAAPITGPTTL 199 >gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5] gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisB5] Length = 249 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 120/201 (59%), Positives = 150/201 (74%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RAQEQ GW+ A Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V+ ++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++ Sbjct: 61 AIRVIGDMLGMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH PLH ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F + G+ Sbjct: 121 IHHDPLHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVS--GNK 178 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 +PGPQ R +AP G T+L Sbjct: 179 PKPGPQNGRQYAAPISGPTTL 199 >gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris DX-1] gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris DX-1] Length = 249 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 119/201 (59%), Positives = 148/201 (73%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ GW+ A Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+ Sbjct: 61 AIRAVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KD YEDLTPE L +++D F++G Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGH--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 +PGPQ R +AP G T+L Sbjct: 179 PQPGPQNGRQHAAPITGPTTL 199 >gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 388 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/205 (58%), Positives = 150/205 (73%), Gaps = 5/205 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRR+ + QP+ F+FS E+ W E I++YP + SA+IPLL RAQEQ G W+ Sbjct: 1 MAVRRVNPD--QPAEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V ++L MA+IR +E+ATFYT FQLSPVGT+AHVQVCGTTPCMLRG LI VC+++ Sbjct: 59 AIRAVCDLLGMAHIRGMEVATFYTMFQLSPVGTKAHVQVCGTTPCMLRGSRDLISVCQHR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH+ P NSDGTLSWEEVEC G C NAP+V IGKDTYEDLT E+ E+++D F G+ Sbjct: 119 IHEHPHTPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGK--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNN 204 ++PG Q R +S PAGG TSL D + Sbjct: 177 LKPGSQTGRTASCPAGGPTSLTDQS 201 >gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506] gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506] Length = 290 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 118/201 (58%), Positives = 147/201 (73%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA E QP +F+F++E+ W + I++YP R SAVIPLLMRAQEQ G WVS Sbjct: 1 MSVRRLAPREVQPENFAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEP 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ V ++L MA IRV EIATFYTQFQL+PVG +AH+QVCGTTPCMLRG +L++VC+++ Sbjct: 61 AMRYVGDMLGMAPIRVYEIATFYTQFQLNPVGKKAHIQVCGTTPCMLRGAGELMDVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH++ H + +G SWEEVEC G CVNAPM+ + KD YEDLTP LE I+DAF +G+ Sbjct: 121 IHEEQFHLSENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFE--RGEK 178 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 GPQI R SS P GL L Sbjct: 179 PDAGPQIARHSSEPVTGLRVL 199 >gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062] gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062] Length = 266 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 121/210 (57%), Positives = 150/210 (71%), Gaps = 5/210 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRL E QP SF FS E+ W +VI RYP R SAV+P+L RAQEQ GWV+ A Sbjct: 1 MSVRRLHHE--QPESFEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I V++ +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E+LI+VC++KI Sbjct: 59 IRVISEMLDMPRIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEELIKVCKSKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P + DG SWEEVEC GACVNAPMV I KD YEDL E+ E+++D + G+ + Sbjct: 119 SETPHTLSEDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGK--PV 176 Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRG 209 PGPQ +DRI +AP GG T+LL+ +G Sbjct: 177 LPGPQGVDRIFAAPEGGPTTLLNIEDTTKG 206 >gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola granulosus HTCC2516] gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola granulosus HTCC2516] Length = 425 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 142/198 (71%), Gaps = 4/198 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHHE--QPESFAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L MAYIR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E+L+E+C+ KI Sbjct: 60 AVAEMLGMAYIRALEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEELMELCKTKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLTP +LE ++D + G+ T P Sbjct: 120 RPHELSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGRVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSL 200 GPQ R +S PA GLTSL Sbjct: 178 GPQNGRYASEPASGLTSL 195 >gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614] gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614] Length = 437 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 149/209 (71%), Gaps = 7/209 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA E QP SF+F+E++ W ++I RYP R SAVIPLL RAQEQ EGWVS Sbjct: 1 MAVRRLAAE--QPESFAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIAELLDMPKIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + G+ Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGK--E 176 Query: 180 IRPGPQIDRISSAPAGGLTSL--LDNNSK 206 + PGPQ R + GG TSL LD+++K Sbjct: 177 VTPGPQNGRRFAMAEGGQTSLTELDDDTK 205 >gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4] gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4] Length = 468 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 116/211 (54%), Positives = 148/211 (70%), Gaps = 5/211 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA E QP F F+ ++ W ++I RYP R SAVIPLL RAQEQ +GWV Sbjct: 1 MAVRRLAAE--QPECFEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++LD+ +IRVLE+ATFYT FQL PVG++AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIADMLDIPHIRVLEVATFYTMFQLQPVGSKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + +G Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIA--EGKE 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 + PGPQ R S P GG TSL + N +G+ Sbjct: 177 VMPGPQNGRRFSMPEGGQTSLTEVNDNSKGE 207 >gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase, E subunit subfamily [polymorphum gilvum SL003B-26A1] gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Polymorphum gilvum SL003B-26A1] Length = 378 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/203 (58%), Positives = 144/203 (70%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA E QP F+F+ ++ W +VI RYP R SAVIPLL RAQEQ +GWV Sbjct: 1 MAVRRLAAE--QPDHFAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L M +IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI VC++K Sbjct: 59 AIRYIADMLGMPHIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGAEDLIRVCKSK 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE LE++I+ + G+ Sbjct: 119 IAAHAHDLSADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGR--E 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 + PGPQ R S P GG TSL + Sbjct: 177 VTPGPQNGRRFSMPEGGATSLTE 199 >gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacterales bacterium HTCC2654] Length = 423 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP+SF+F+ ++ W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHHE--QPASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 GVADMLGMEYIRALEVATFYFMFQLQPVGSVAHFQICGTTSCMIMGAEDLIAVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++ID G G+ P Sbjct: 120 NPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLIDRM--GAGEVPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S PAGGLTSL D+ + K Sbjct: 178 GPQNGRYASEPAGGLTSLKDHEANK 202 >gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 418 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/210 (56%), Positives = 144/210 (68%), Gaps = 5/210 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA E QP SF F+EE+ W ++I RYP R SAVIPLL RAQEQ +GWVS Sbjct: 1 MAVRRLAAE--QPDSFEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIADLLDMPNIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLT E +++D G+ Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDA--GND 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 + PGPQ R S GG TSL + +G Sbjct: 177 VTPGPQNGRRFSMAEGGQTSLTEIEDDTKG 206 >gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium Y4I] gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium Y4I] Length = 389 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGWV++ AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A++L MAYIRVLE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VCR KI Sbjct: 60 AIADMLGMAYIRVLEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ + P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--LVAP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGK 202 >gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150] gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150] Length = 379 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/206 (55%), Positives = 147/206 (71%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL +E QP+SF+F+ + W ++++P R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKE--QPASFAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LIEVC+ +I Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEALIEVCQQEIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + + DG SWEEVEC GAC NAPMV IGKD YEDLTPE+L EI+ + G+ T P Sbjct: 120 KAHNLSDDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGRVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GLTSL + S K+ Sbjct: 178 GPQNGRYAAEPLSGLTSLKEFESGKK 203 >gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2] gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2] Length = 366 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 145/205 (70%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP +F+F+ ++ W + ++P R SA+IP+L RAQEQEGW+SRAAIE Sbjct: 2 LRRLYHD--QPETFAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LD+AYIR LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI Sbjct: 60 HVAAMLDLAYIRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKITD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EIID + G+ T P Sbjct: 120 KPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGRVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL D++S K Sbjct: 178 GPQNGRYAAEPLKGLTSLKDHDSGK 202 >gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b] gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b] Length = 396 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 117/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL +E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHKE--QPESFAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDM +IR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VCR KI Sbjct: 60 HVAQMLDMDFIRGLEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEDLIGVCREKISP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG LSWEEVEC GAC NAPM IGKD YEDLT ER +++D G+ P Sbjct: 120 NPHELSADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGK--VPAP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSLL ++ + Sbjct: 178 GPQNGRYASEPVSGLTSLLAHDKGR 202 >gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 382 Score = 234 bits (597), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPE--QPESFAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VCR KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E IID ++G+ P Sbjct: 120 KPHQLSADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GGLTSL + K Sbjct: 178 GPQNGRYAAEPKGGLTSLKEYEPGK 202 >gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] Length = 303 Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 113/200 (56%), Positives = 140/200 (70%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSA--GEVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131] gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides KD131] Length = 303 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/204 (55%), Positives = 141/204 (69%), Gaps = 4/204 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206 GPQ R SS PAGG TSL + S+ Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGSQ 201 >gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601] gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Roseovarius sp. HTCC2601] Length = 382 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/201 (57%), Positives = 140/201 (69%), Gaps = 4/201 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F++ + W IS+YP R SAVIPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPESFAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDMAYIRVLE+ATFY FQL PVG+ AHVQ+CGTT CM+ G E L+ VC++KI Sbjct: 60 AVAEMLDMAYIRVLEVATFYFMFQLQPVGSVAHVQICGTTTCMICGAEDLMAVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P Sbjct: 120 KAHEVSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDN 203 GPQ R SS P GG L ++ Sbjct: 178 GPQNGRYSSEPKGGPVVLTEH 198 >gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3] gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria pomeroyi DSS-3] Length = 414 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W ++++P R SAVIPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVGT AH+Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 AVADMLGMAYIRVLEVASFYFMFQLQPVGTVAHIQICGTTSCMICGAEDLIAVCKEKIAD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT +R E++D + G+ P Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL + +S K Sbjct: 178 GPQNGRYASEPLKGLTSLTEYDSGK 202 >gi|163741488|ref|ZP_02148879.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10] gi|161385222|gb|EDQ09600.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10] Length = 397 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37] gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37] Length = 242 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF F+E + W E I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL P G+ AH+Q+CGTT CM+ G E L+ VCR+KI Sbjct: 60 YVSEMLGMAYIRGLEVATFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLMAVCRDKISA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP + DG SWEEVEC GAC NAPM IGKD YEDLT E+L ++DA +G+ +P Sbjct: 120 KPHTLSEDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDALD--KGEVPQP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R +S P GG T+L + Sbjct: 178 GPQNGRFASEPLGGATTLTE 197 >gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius nubinhibens ISM] gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius nubinhibens ISM] Length = 437 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/203 (55%), Positives = 139/203 (68%), Gaps = 4/203 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+FS + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLYKD--QPESFAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQ+ PVG+ AH Q+CGTT CM+ G E L+ VCR K+ Sbjct: 60 HVADMLGMAYIRALEVASFYFMFQMQPVGSVAHFQICGTTSCMICGAEDLVAVCREKVAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P + DG SWEEVEC GAC NAPM IGKD YEDLT ER EIID + G+ T P Sbjct: 120 NPHELSPDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGK--TPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205 GPQ R ++ P GLTSL + +S Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDS 200 >gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1] gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter sphaeroides 2.4.1] Length = 303 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029] gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides ATCC 17029] Length = 303 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6] gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6] Length = 384 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W +++YP R SAVIPLL RAQEQEGWVS+ A+E Sbjct: 2 LRRLHSE--QPESFAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQ+ P G+ AHVQ+CGTT CM+ G E L+ +C+ KI + Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLVAICKEKIAE 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E ++D + G+ + P Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGK--KVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202 >gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035] gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035] Length = 396 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/205 (56%), Positives = 138/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLYHQ--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC++KI Sbjct: 60 HVADMLAMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P Sbjct: 120 KAFDLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL D +S + Sbjct: 178 GPQNGRYAAEPKSGLTSLKDFDSGR 202 >gi|163738801|ref|ZP_02146215.1| ATP synthase subunit E [Phaeobacter gallaeciensis BS107] gi|161388129|gb|EDQ12484.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis BS107] Length = 397 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSIAHVQICGTTSCMICGAEDLIAVCQDKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 QPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp. R11] gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp. R11] Length = 391 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHSE--QPESFAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC+ KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCKEKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1] gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1] Length = 395 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A+IR LE+ATFY FQL PVG AH+Q+CGT CM+ G E L+ V R KI Sbjct: 60 GVADMLGLAHIRALEVATFYFMFQLQPVGAVAHIQICGTLSCMICGAEDLVAVAREKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC GAC NAPM IGKD YEDLT E IIDA + G+ T P Sbjct: 120 NPHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMARGEVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ +R +S PAGGLTSL ++ + + Sbjct: 178 GPQTERYASEPAGGLTSLTEHAAGR 202 >gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45] gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45] Length = 389 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F+ + W I+++P R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPD--QPDSFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E L+ VC+ +I Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCKERIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT RL EI+D S G+ P Sbjct: 120 KPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDGR--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GGLTSL D+ S + Sbjct: 178 GPQNGRYASEPLGGLTSLTDHESGR 202 >gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter sp. TrichCH4B] gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter sp. TrichCH4B] Length = 410 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGWV++ A+E Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMICGAEDLIAVCKDKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ID + G+ + P Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGK--AVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL D + K Sbjct: 178 GPQNGRYAAEPKSGLTSLKDYEADK 202 >gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193] gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193] Length = 383 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W ++++P R SAVIPLL RAQEQEGWVS+ AIE Sbjct: 2 LRRLHSE--QPESFAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A++L MAYIRVLE+ +FY FQ+ P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YIADMLGMAYIRVLEVCSFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + G+ + P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGK--KVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202 >gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella vestfoldensis SKA53] gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella vestfoldensis SKA53] Length = 309 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP++F+F++ + W + ++P R SA+IP+L RAQEQEGW++R AIE Sbjct: 2 LRRLYHD--QPATFAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDMAY+R LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI Sbjct: 60 YVAKMLDMAYMRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC G+C NAPM IGKD YEDLT RL EIID + G+ T P Sbjct: 120 KAHSLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGRVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GGLT+L D S K Sbjct: 178 GPQNGRFAAEPKGGLTTLKDFTSGK 202 >gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Thalassiobium sp. R2A62] gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Thalassiobium sp. R2A62] Length = 366 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +LD+A+IR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E LI VC++KI Sbjct: 60 HVSTMLDLAFIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLIGVCQDKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP H ++DG SWEEVEC GAC NAPM IGKD YEDL ERL EII+ G+ T P Sbjct: 120 KPHHLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGKVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRFAAEPLSGLTSLTEYDSGR 202 >gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025] gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides ATCC 17025] Length = 303 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/200 (57%), Positives = 137/200 (68%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W IS+YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HHAQPDSFAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MA IR LE+ATFY FQL PVG AH+Q+CGTT C++ G E+LI VCR KI Sbjct: 60 HVADMLGMARIRALEVATFYFMFQLQPVGRVAHIQICGTTSCLICGAEELIRVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS GD RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GDVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 G QI R SS PAGG TSL + Sbjct: 178 GSQIGRFSSEPAGGATSLTE 197 >gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Octadecabacter antarcticus 307] gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Octadecabacter antarcticus 307] Length = 277 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 146/205 (71%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI + Sbjct: 60 GVADMLGLAFMRALEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT R+ E+IDA + +G+ P Sbjct: 120 NPHEVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALA--RGEVPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLT+L D + K Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYEAGK 202 >gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] Length = 460 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+F+ E+ W +++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKD--QPESFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LI VC+ I Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEDLIAVCQEMIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT ERL EI+ + +G P Sbjct: 120 KAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELA--EGKVPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202 >gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium KLH11] gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium KLH11] Length = 365 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI Sbjct: 60 SVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E +++D G+ P Sbjct: 120 KPHVLSADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGR--VPIP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL ++S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTAHDSGR 202 >gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius sp. 217] gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius sp. 217] Length = 398 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 136/205 (66%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLYHK--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 HVADLLRMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCQEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P Sbjct: 120 KAFELSTDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S + Sbjct: 178 GPQNGRYAAEPKSGLTSLKEFESGR 202 >gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2] gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2] Length = 254 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 139/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP+SF+F+ + W +S+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRL--HHTQPASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ A++Q+CGTT C++ G E LI VCR I Sbjct: 60 HVADMLGMAYIRALEVATFYFMFQLQPVGSVANIQICGTTSCLICGAEDLIAVCRELIAD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDL ERL +I FS G+ P Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGEVPV--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL D+ + + Sbjct: 178 GPQNGRYASEPLAGLTSLKDHAAGR 202 >gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides ATCC 15264] gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/202 (55%), Positives = 148/202 (73%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP+SF+FS+E+ V+ I++YP R +SAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAKD--QPASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A+ LDMAYIRVLE+ATFYT F L PVG+ A +QVCGTTPCMLRG +L++VC+++I Sbjct: 59 IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSGELMKVCKSRI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +K ++DG WEEVEC GACVNAPM MI +EDLT L +IID F+ G+ Sbjct: 119 GEK-QTLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDDFAAGKAP-- 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PG +IDR++SAP GG +L D Sbjct: 176 KPGTRIDRVNSAPEGGPLTLTD 197 >gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255] gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255] Length = 245 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/207 (54%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS+RRL QP SF+FS+E+ W + +YP R SAVIP+L RAQEQEGW+S+ A Sbjct: 1 MSIRRL--HTTQPDSFTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE V +L+M +IRVLE+A+FY FQL+PVG+ AH+QVCGT CM+ G E LI +C+ I Sbjct: 59 IEAVGELLEMPFIRVLEVASFYFMFQLAPVGSVAHIQVCGTLSCMICGAEDLIGICKEII 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +KP + DG LSWEEVEC GAC NAPM IGKD YEDLT I++ G+ T Sbjct: 119 SEKPHELSEDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQLLKGEVPT- 177 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKK 207 PGPQ R +S P GLT+L D NS K Sbjct: 178 -PGPQNGRYASEPLSGLTTLSDFNSGK 203 >gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36] gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1] gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1] gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36] Length = 436 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 138/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL PVG AH Q+CGTT CM+ G E LIEVC+ +I Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGEVAHFQICGTTSCMICGAEDLIEVCKERIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT + +ID + GQ P Sbjct: 120 KAHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQ--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL D++S K Sbjct: 178 GPQNGRYASEPLSGLTSLTDHDSGK 202 >gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus 238] gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus 238] Length = 354 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 146/205 (71%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI + Sbjct: 60 SVADMLGLAFMRALEVASFYFMFQLKPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ ++IDA + +G+ P Sbjct: 120 NPHDVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALA--RGEVPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLT+L D + K Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYAADK 202 >gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB 1003] gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus] gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter capsulatus] gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus] gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB 1003] Length = 389 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 109/197 (55%), Positives = 134/197 (68%), Gaps = 4/197 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+++ AIE Sbjct: 2 LRRL--HATQPDSFAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++LDM YIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LIEVC+ KI Sbjct: 60 YVADLLDMPYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMIMGSENLIEVCKRKISH 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC GAC NAPM IGKD +EDLT LE +ID + G+ P Sbjct: 120 HPHALSADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGKAPV--P 177 Query: 183 GPQIDRISSAPAGGLTS 199 G +I R + PA GLTS Sbjct: 178 GSEIGRFGAEPATGLTS 194 >gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040] gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040] Length = 398 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 139/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGW+S+ AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL P G+ AH+Q+CGTT CM+ G E L+ +C++KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP + DG SWEEVEC G+C NAPM IGKD YEDLT +++D + G+ + P Sbjct: 120 KPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGK--PVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + + K Sbjct: 178 GPQNGRYAAEPKAGLTSLTEYEAGK 202 >gi|163732061|ref|ZP_02139507.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149] gi|161394359|gb|EDQ18682.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149] Length = 359 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP +F+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHPD--QPETFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E LI VC+ KI + Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLISVCQEKIAR 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL++ +S K Sbjct: 178 GPQNGRYAAEPLKGLTSLIEYDSGK 202 >gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12] gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL 12] Length = 402 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP+ F+F+ E+ W ++++P R SA+IP+L RAQEQEGW+S+ AIE Sbjct: 2 LRRLHAE--QPADFAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++LDM YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E L+ VC+ KI Sbjct: 60 YVADMLDMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCMICGAEDLVAVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++D + G+ P Sbjct: 120 RAHQLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGE--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S PAGGLTSL + + K Sbjct: 178 GPQNGRYTSEPAGGLTSLTEYEAGK 202 >gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101] gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101] Length = 421 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L +AYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI Sbjct: 60 HVSEMLGLAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + DG SWEEVEC GAC NAPM IGKD YEDLT E +ID + G+ P Sbjct: 120 KAHQISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL D +S K Sbjct: 178 GPQNGRYASEPLSGLTSLTDYDSGK 202 >gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella sp. SE45] gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella sp. SE45] Length = 388 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 116/204 (56%), Positives = 139/204 (68%), Gaps = 7/204 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W I++YP R SAVIPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHPE--QPESFAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VC+ KI Sbjct: 60 TVADMLGMAYIRVLEVATFYFMFQLQPVGSVAHVQVCGTTTCMICGAEDLIGVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P Sbjct: 120 KAHVVSPDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGG---LTSLLDN 203 GPQ R S P GG LT+ +D Sbjct: 178 GPQNGRYGSEPLGGPVVLTAHVDG 201 >gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114] gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh 114] Length = 359 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHPD--QPDSFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E L+ VC+ KI + Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLVAVCQEKIAR 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202 >gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium HTCC2083] gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacteraceae bacterium HTCC2083] Length = 384 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKD--QPDSFAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L +AYIR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E L+ VCR KI Sbjct: 60 HVSDMLGLAYIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCREKISN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +++D + G T P Sbjct: 120 KPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAGSVPT--P 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R S P GL+SL D +S K Sbjct: 178 GPQNGRYSCEPLSGLSSLKDYDSGK 202 >gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222] gi|266652|sp|P29914|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1, chain 2 gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans] gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222] Length = 239 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 109/200 (54%), Positives = 136/200 (68%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL+ QP SF F+ + W +++YP R QSA+IP+L RAQEQEGW+SR AIE Sbjct: 2 LRRLSP--IQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A++L M YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 YCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLT E+L +ID F+ G+ P Sbjct: 120 EPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPV--P 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R S+ GG T+L D Sbjct: 178 GPQNGRFSAEALGGPTALAD 197 >gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 224 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 7/209 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA E QP+SF+FS E+ W + I++YP R SAVIPLL +AQEQ GW+ Sbjct: 1 MSVRRLAAE--QPASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA+ L MAYIRVLEIATFYT F L PVG R VQ+CGTTPC LRG +KL EVC K Sbjct: 59 AIRVVADKLGMAYIRVLEIATFYTMFNLEPVG-RHFVQLCGTTPCALRGADKLKEVCHRK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + H DG LSW EVEC GAC NAPMV + D +EDLTPE LE+++D G+ Sbjct: 118 IGPE-RHVTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 ++ G Q R +SAP GG TSL D + R Sbjct: 175 VKTGSQTGRQASAPEGGRTSLTDPSLYNR 203 >gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Brevundimonas sp. BAL3] gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Brevundimonas sp. BAL3] Length = 225 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 139/202 (68%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS ++ I +YP SR QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAKE--QPASFAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I + +L M +IRVLE+ATFYT F L PVG A +QVCGTTPCMLRG +L++VC+ KI Sbjct: 59 IRAIGELLGMPFIRVLEVATFYTMFMLEPVGKTALIQVCGTTPCMLRGANELMKVCKEKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K H ++DG +W+EVEC GAC NAPM I +EDLTPE L +IID F+ G+ T Sbjct: 119 GPKD-HLSADGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PG R +S PAGG +LLD Sbjct: 176 KPGSYQGRATSEPAGGAKTLLD 197 >gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25] gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25] Length = 238 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/180 (58%), Positives = 125/180 (69%), Gaps = 2/180 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I++YP R SA+IPLL RAQEQEGW++RAAIE VAN+L+M +IR LE+ATFY FQL P Sbjct: 27 IAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIEHVANMLEMPFIRALEVATFYFMFQLQP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG AH+Q+CGT CML G E L+ VCR KI +P + DG LSWEEVEC GAC NAPM Sbjct: 87 VGAVAHLQICGTLSCMLCGAEDLVSVCRQKIAAQPHSLSDDGKLSWEEVECLGACTNAPM 146 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 IGKD YEDLT E L ++IDA GD +PGPQ R S+ P GG T L + K+ Sbjct: 147 AQIGKDYYEDLTAEGLSDLIDALRA--GDVPQPGPQNGRFSAEPLGGATVLQNTPGDKQA 204 >gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus CB 48] gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus CB 48] Length = 221 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 112/202 (55%), Positives = 136/202 (67%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA QP SF+F E+ N I++YP +R QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAA--VQPDSFAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I VVA +L MA IRV E+ATFYT F L PVG+ A +QVCGTTPC LRG E L++VC++KI Sbjct: 59 IAVVAEMLGMARIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCQLRGSEALMKVCKDKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K ++DG W+EVEC GAC NAPM I YEDLTP+ L +IID FS G+ T Sbjct: 119 GPKD-KLSADGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 + GP R +S P GG T+L D Sbjct: 176 KTGPYNGRFTSEPLGGATTLKD 197 >gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii ATCC 17100] Length = 341 Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 7/209 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRL + QPS F F+ E+ W E I +YP R Q+AV+PLL RAQEQ + W+ Sbjct: 1 MSVRRL--DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V ++L M YIRV E+ATFY+ F LSPVG R HVQVCGTTPCMLRG E + +VC+ + Sbjct: 59 AIRYVGDLLGMPYIRVYEVATFYSMFNLSPVG-RYHVQVCGTTPCMLRGAEDIKKVCKRE 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + +G SW EVEC GACVNAPMV I D YEDLTPE E ++ G+ Sbjct: 118 IGDE-REVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGR--E 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 ++PG QI R SAP GG T+LL + +K+ Sbjct: 175 VKPGSQIGRQCSAPEGGPTTLLFEDEEKQ 203 >gi|197105263|ref|YP_002130640.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1] gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1] Length = 220 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/202 (53%), Positives = 133/202 (65%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRL+ QP SF+FS E+ ++ +PP + QSAV+P+L Q+QEGWVS A Sbjct: 1 MSVRRLSP--VQPESFAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I VA +L M IRVLE+ATFYT F L PVGT A VQVCGTTPC RG E L+EVC+ +I Sbjct: 59 IRAVAELLGMPVIRVLEVATFYTMFMLEPVGTHALVQVCGTTPCQSRGAEALMEVCKRRI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + HR++DG W+EVEC GAC NAPM I YEDLTPE E+++D F+ G+ T Sbjct: 119 GPQ-SHRSADGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 PG I R SAP GG +L D Sbjct: 176 PPGSAIGRQCSAPEGGPMTLTD 197 >gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC 21756] gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC 21756] Length = 229 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 107/202 (52%), Positives = 138/202 (68%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS+ES + ++YP +R QSAVIP+L AQ+QEGW+S A Sbjct: 1 MSVRRLAKE--QPASFTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V ++KI Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKDKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ + Sbjct: 119 GEAN-HVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PG R++S P G + +L D Sbjct: 176 KPGSYDGRVASEPKGKIQTLTD 197 >gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum C19] gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum C19] Length = 218 Score = 207 bits (528), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 109/203 (53%), Positives = 136/203 (66%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA QP+SF+FS E+ N I++YP +R QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAA--VQPASFAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A +L M IRV E+ATFYT F L PVG+ A +QVCGTTPCMLRG + L+ VC+ KI Sbjct: 59 ISAIARLLGMPQIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSDALMAVCKAKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K ++DG +W+EVEC GAC NAPM I YEDLT E + +IID F+ G+ T Sbjct: 119 GPKD-KLSADGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 PGP R +S P GG T+L D+ Sbjct: 176 APGPYNGRKTSEPLGGATTLSDS 198 >gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris BL2] gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris BL2] Length = 264 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/202 (53%), Positives = 137/202 (67%), Gaps = 7/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRRLAE QP SF+FS E+ WV+ +I++YP R SAVI LL RAQ+Q G W+ R Sbjct: 1 MTVRRLAE--VQPDSFAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M YIRVLEIATFY+ F LSPVG VQ+CGTTPC+L G + + V +N+ Sbjct: 59 AIEAVAEKLGMPYIRVLEIATFYSMFNLSPVGEH-FVQLCGTTPCLLAGSDGIKSVLKNR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + P +DG SW EVEC GAC NAPMV I D +EDLTP+ +++D + G+ Sbjct: 118 IGE-PGVVTADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 + G Q R+SS PAGGLT+L+ Sbjct: 175 VTAGSQTGRVSSEPAGGLTALV 196 >gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium OB3b] gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium OB3b] Length = 208 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/201 (53%), Positives = 135/201 (67%), Gaps = 7/201 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS RRLAEE QPSSF F+ E+ W+ I++YP R S V+P L +AQ+Q + W+ + Sbjct: 1 MSTRRLAEE--QPSSFEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQK 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M YIRVLEIATFYT F L PVG + +VQ+CGTTPCML G + LI V + Sbjct: 59 AIEKVAQTLGMPYIRVLEIATFYTMFNLEPVG-KFYVQLCGTTPCMLSGSDDLIAVLERR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + H ++DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+ Sbjct: 118 VGPQ-RHVSADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 ++ G Q RISS PAGGLTSL Sbjct: 175 VKTGSQTGRISSEPAGGLTSL 195 >gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans DS-1] gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum lavamentivorans DS-1] Length = 208 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 105/203 (51%), Positives = 138/203 (67%), Gaps = 7/203 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRL + QP+SF+F+ E+ W + I++YP + SA+IPLL RAQEQ +GW+ Sbjct: 1 MSVRRL--DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M YIR +E+ATFYT F LSPVG +VQ+CGTTPC LRG ++L EVCR Sbjct: 59 AIRHVADMLGMEYIRAIEVATFYTMFNLSPVGEH-YVQLCGTTPCWLRGADELKEVCRKH 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++DG SW EVEC GACVNAPMV I D +EDL E ++ +G+ Sbjct: 118 IGPEGT-VSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGK--D 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++PGPQ +R +S PAGGLTSL + Sbjct: 175 VKPGPQNERHASEPAGGLTSLTN 197 >gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15] gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000] gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15] gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000] Length = 228 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 107/203 (52%), Positives = 135/203 (66%), Gaps = 7/203 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS++S + ++YP R QSAVIP+L AQ+QEGW+S A Sbjct: 1 MSVRRLAKE--QPASFAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L +V +KI Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLRKVLEDKI 118 Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 P H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ Sbjct: 119 G--PAHHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGKAP- 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R +S P G + +L D Sbjct: 176 -KPGSYEGRGASEPKGAIHTLTD 197 >gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31] gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31] Length = 228 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 108/202 (53%), Positives = 132/202 (65%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS ES + ++YP R QSAVIP+L AQ+QEGWVS A Sbjct: 1 MSVRRLAKE--QPASFAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V + KI Sbjct: 59 IQEIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKAKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 Q ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ + Sbjct: 119 GQA-NDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PG R +S P G + +L D Sbjct: 176 KPGSYDGRGASEPKGAIHTLTD 197 >gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans ORS 2060] gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans ORS 2060] Length = 385 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/203 (51%), Positives = 132/203 (65%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP SF+F+ E+A W + I++YP R SAVIPLL RAQEQ G W+ + Sbjct: 1 MANRRLAPTAEQPESFAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G + L + + Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKDLKRMLEER 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H + DGT SW EVEC GAC NAPMV I D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GHVSPDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++ G QI R SS P G +T+L D Sbjct: 177 VKTGSQIGRTSSEPLGAVTTLTD 199 >gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC 49814] gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC 49814] Length = 366 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 6/202 (2%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA 60 S+RR + E SF+F E+ + +S+YP R +SAVIP+L AQ + +GW+S A Sbjct: 3 SIRRF-DIEAGGESFAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPA 61 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L MAYIRV E+ATFYT F++ PVG H+QVCGTTPCMLRG + L++VC++KI Sbjct: 62 MREVADRLGMAYIRVYEVATFYTMFRMQPVG-EFHIQVCGTTPCMLRGSDDLMKVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +K H ++G LSWEEVEC GACVNAPM I YEDL + ++D F G+ Sbjct: 121 GEKG-HVGANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKNPA- 178 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 PG + DR +SAP GGLTSLLD Sbjct: 179 -PGTRADRKNSAPEGGLTSLLD 199 >gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46] gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46] Length = 394 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/203 (50%), Positives = 131/203 (64%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA E QP++F+F+ E+A W I++YP R SAVIPLL RAQEQ G W+ + Sbjct: 1 MANRRLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G ++L ++ Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKELKHYLHDR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H + DG SW EVEC GAC NAPMV I +D YEDLTPE L ++D + G+ Sbjct: 120 LGPA-GHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++ G Q R SS P G T+L D Sbjct: 177 VKAGSQAGRTSSEPKGAATTLTD 199 >gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus Py2] gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus Py2] Length = 229 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA E QP SF + E ++I++YP R SAV+PLL Q+ G W+ Sbjct: 1 MSVRRLAAE--QPESFDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA L MA IRVLEIATFYT F L PVG + VQ+CGTTPCMLRG E + VC K Sbjct: 59 AIRAVAERLGMANIRVLEIATFYTMFNLEPVG-KYFVQLCGTTPCMLRGAEAIKHVCEKK 117 Query: 120 I-HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 I H++ H ++DGT SW EVEC GAC NAPMV I D YEDLTPE E+++D + G+ Sbjct: 118 IGHER--HVSADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGR-- 173 Query: 179 TIRPGPQIDRISSAPAGGLTSLLD 202 ++ GPQ R S P GG L D Sbjct: 174 PVKVGPQNSRRGSEPEGGARVLSD 197 >gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC 49242] gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC 49242] Length = 202 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 133/202 (65%), Gaps = 9/202 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLAE QP SF F+ E+ W+ + I++YP R SAV+P L +AQ+Q W+ + Sbjct: 1 MSVRRLAEN--QPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQK 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M IRVLE+ATFYT F L PVG + ++Q+CGTTPCML G + LI+V + Sbjct: 59 AIEKVAETLGMPKIRVLEVATFYTMFNLEPVG-KYYIQLCGTTPCMLCGSDDLIKVLERR 117 Query: 120 IHQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + P + +DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+ Sbjct: 118 VG--PQRKVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR-- 173 Query: 179 TIRPGPQIDRISSAPAGGLTSL 200 ++ G Q R+SS P GGLTSL Sbjct: 174 PVKTGSQKGRVSSEPEGGLTSL 195 >gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC 15444] gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC 15444] Length = 257 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/203 (50%), Positives = 133/203 (65%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRA 59 M++RR + E SFSF E+ + ++YP + +SAVIP+L AQ + GW+S Sbjct: 1 MALRRF-DLEAGGDSFSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEP 59 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+ L+M Y+RV E+ATFYT F+L PVG + HVQ+CGTTPC LRG E L EVC + Sbjct: 60 AMREVADRLEMPYMRVYEVATFYTMFRLQPVG-KFHVQLCGTTPCQLRGAENLKEVCTRE 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I K ++ D LSWEEVEC GACVNAPMV I D YEDLTP+ L +II G Sbjct: 119 IG-KQMYVTDDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNGV--E 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 + PGPQIDR++SAP GG +L + Sbjct: 176 VTPGPQIDRVNSAPEGGNATLTE 198 >gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium radiotolerans JCM 2831] gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium radiotolerans JCM 2831] Length = 457 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/203 (51%), Positives = 129/203 (63%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP SF+FS E+A W I++YP R SAVI LL RAQEQ G W+ RA Sbjct: 1 MANRRLAPASEQPESFAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M IRVLE+ATFYT F L PVG R +QVCGT PC G L E+ + + Sbjct: 61 AIEAVAAELGMPNIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDSCGARGLKEMLQAR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPA-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++ G Q R+SS P G + +L D Sbjct: 177 VKVGSQTGRVSSEPQGAVNTLTD 199 >gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magneticum AMB-1] gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magneticum AMB-1] Length = 202 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 3/197 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 ++ ++P SF+F+ E +++YP R QSAV+PLL AQ QEGWVSRAA+EV+A Sbjct: 1 MSNHSYEPESFAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG + ++ + + + Sbjct: 61 EMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDDVVAAAKAALGVEFG 119 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 +DG + EVEC GACVNAPM+ I D YEDLTPE + +++AF +G+T +PGPQ Sbjct: 120 DMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFK--RGETPKPGPQ 177 Query: 186 IDRISSAPAGGLTSLLD 202 R S PAGG TSL + Sbjct: 178 NGRQFSCPAGGPTSLTE 194 >gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/197 (48%), Positives = 129/197 (65%), Gaps = 3/197 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 ++ ++P SF+F+ E I++YP R QSAV+PLL AQ QEGWVSRAA+EV+A Sbjct: 1 MSNHSYEPESFAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG ++++ + + + Sbjct: 61 EMLDMAPIRVEEVATFYTMYNRKPVGTF-HVQVCTNLPCMLRGSDEVVAAAKAALGVEFG 119 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 +DG + EVEC GACVNAPM+ I D YEDL+ E + +++AF +G+T +PGPQ Sbjct: 120 EMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFK--RGETPKPGPQ 177 Query: 186 IDRISSAPAGGLTSLLD 202 R S PAGG TSL + Sbjct: 178 NGRQFSCPAGGPTSLTE 194 >gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum centenum SW] gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum centenum SW] Length = 210 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 95/190 (50%), Positives = 128/190 (67%), Gaps = 4/190 (2%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 SFSF++E+ +I++YPP R QSAV+PLL AQ Q G W+SR AIE VA++L+M Sbjct: 11 GSFSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRPAIEYVADMLEMPR 70 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR +E+A+FYT + L PVG + VQVC TTPC LRG + ++ C K+ K +DG Sbjct: 71 IRAMEVASFYTMYNLKPVG-KHFVQVCTTTPCWLRGSDDILHTCEKKLGIKAGETTADGQ 129 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + E EC GACVNAPMV IG +EDLTPE +E I+DA + + +T +PGPQ RI+S Sbjct: 130 FTVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALA--RDETPKPGPQNGRIASC 187 Query: 193 PAGGLTSLLD 202 P+GG T+L + Sbjct: 188 PSGGPTTLTE 197 >gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10] gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10] Length = 221 Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 145/222 (65%), Gaps = 14/222 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP SF+F+++S + +++YP ++ SAVIP+L AQ+QEGWVS A Sbjct: 1 MSVRRLAKE--QPESFAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A L+M YIRV E+ATFYT F L PVGT +QVCGTTPCMLRG +LI+VC+ +I Sbjct: 59 IRDIAGRLEMPYIRVYEVATFYTMFNLEPVGTHL-IQVCGTTPCMLRGSGELIDVCKKRI 117 Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175 ++ H ++DG +W EVEC GAC NAPM+ + G EDL +LE ++D + G Sbjct: 118 GKQ--HEISADGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAG 175 Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + I+ GPQ +R +S P G T +L + S G + K K+ Sbjct: 176 K--QIKYGPQSERNASEPHG--TKVLTDPSLYDGSRAKKIKL 213 >gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503] gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503] Length = 221 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 5/207 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP SF ++E++ W + I+++P R SAVIP L RAQ+QEGWVS A+E +A L M Sbjct: 10 QPDSFQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPAMEAIATQLGMP 69 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 YIRV E+ATFYT F L PVGT VQVCGTTPCMLRG E LIEVC I + S G Sbjct: 70 YIRVYEVATFYTMFNLKPVGTY-FVQVCGTTPCMLRGSESLIEVCERVIGPQGAITES-G 127 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-QIDRIS 190 LSW EVEC GAC NAPM I Y+DLTPE+ EEI+ + +G+ + PG R + Sbjct: 128 HLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEIL--LTLDKGEAVAPGVFNPARHT 185 Query: 191 SAPAGGLTSLLDNNSKKRGKKKKDDKI 217 S P G T+L D + K D++ Sbjct: 186 SDPEGDNTTLTDESLYDGSAAKPIDRL 212 >gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi BJ001] gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi BJ001] Length = 412 Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 99/203 (48%), Positives = 130/203 (64%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +Q+CGT PC G ++L ++ Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RFWIQICGTVPCDCCGAKELKAALHDR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++ G QI RISS P + +L D Sbjct: 177 VKVGSQIGRISSEPKDAVNTLTD 199 >gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha proteobacterium HIMB114] gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha proteobacterium HIMB114] Length = 201 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 6/206 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS + +A+ QPSSF+F++E+ + EV+ +YP ++ +SAV+PLL AQ Q W+ A Sbjct: 1 MSGKHVAKN--QPSSFAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI++++++L + YI+V E+ATFYT + L+PVG + VQVC TTPCM+RG K++EVC+ Sbjct: 59 AIQLISDMLGVTYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCMIRGSGKVVEVCKKH 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I +K H N + SW EVEC GACVNAPMV I D +EDL E+ E II F G+ Sbjct: 118 ISEKQGHLNKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGKLPN 177 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205 I G Q R S P T+LL N+ Sbjct: 178 I--GSQSGRKGSEPIQNRTTLLKKNA 201 >gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 222 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 130/201 (64%), Gaps = 7/201 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS RRLAE QP SF+F+ ES ++++YP R SAVI LL +AQ+Q + W+ R Sbjct: 1 MSNRRLAE--IQPDSFAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA++L M YIRVLE+ATFYT F L PVG R ++Q CGTTPC++ G + + V + Sbjct: 59 AIEKVADMLHMPYIRVLEVATFYTMFNLEPVG-RYYIQFCGTTPCLIAGSDDIKAVLEKR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + SDG SW+EVEC GAC NAPMV I D YEDLTPE ++D + G+ Sbjct: 118 VGPEG-QVTSDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 +R G QI R SS GGLT+L Sbjct: 175 VRIGSQIGRTSSEMHGGLTAL 195 >gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens DM4] gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens DM4] Length = 412 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115 Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +H++ P + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175 Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202 ++ G QI R+SS P + +L D Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199 >gi|240137578|ref|YP_002962049.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens AM1] gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens AM1] Length = 412 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115 Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +H++ P + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175 Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202 ++ G QI R+SS P + +L D Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199 >gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens PA1] gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium chloromethanicum CM4] gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens PA1] gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium chloromethanicum CM4] Length = 412 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115 Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +H++ P + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175 Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202 ++ G QI R+SS P + +L D Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199 >gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique HTCC1062] gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1062] Length = 202 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q + W+ A Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T Sbjct: 118 ISENENELSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +LLD Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198 >gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58] gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58] Length = 226 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 100/214 (46%), Positives = 132/214 (61%), Gaps = 14/214 (6%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ Sbjct: 11 AETRARWGAFAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVP 70 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +E +A LDM Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK Sbjct: 71 VMEYIARQLDMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 130 GLIKG-STTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPK 188 Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210 I GPQIDR +S P GG TSL +++N RG+ Sbjct: 189 I--GPQIDRQTSCPEGGPTSLPEMVEDNHDYRGQ 220 >gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1002] gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1002] Length = 202 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q + W+ A Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + +++ + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T Sbjct: 118 ISENENELSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +LLD Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198 >gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] Length = 241 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 3/203 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 30 LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC+ K+ Sbjct: 90 MHKVADILGLPNMRVYEVATFYTMFMRKPTGTY-HIQVCTTTPCWLRGSDEVMNVCKKKL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P DG + EVEC GACVNAPMV + D YEDLT + EEI+D QG Sbjct: 149 GISPGETTKDGKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDTEEILDDLK--QGKVP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 RPGP+ R +S PAGGLTSL ++ Sbjct: 207 RPGPRNGRFASEPAGGLTSLTED 229 >gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211] gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211] Length = 202 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS++R A++ QP +F F+ S V ++S+YP + QSAV+ LL AQ Q W+ A Sbjct: 1 MSLKRPAKD--QPENFEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A L+M YI+V E+ATFYT + LSPVG VQVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIAKFLEMPYIKVYEVATFYTMYNLSPVGN-FFVQVCTTTPCMIRGANKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D +G+T Sbjct: 118 ISENECELSNDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDKIL--KGET 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +L+D Sbjct: 176 PKPGSYRGRVNNEPENNRKTLMD 198 >gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] Length = 215 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/190 (46%), Positives = 125/190 (65%), Gaps = 4/190 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70 +P+SF+F+ ++ +I++YP + SA +PLL AQ Q G W+ R A++ VA++L M Sbjct: 12 EPTSFTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGM 71 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 IRV E+ATFYT + +PVG R H+QVC TTPC LRG + ++ C+ K+ +D Sbjct: 72 PRIRVYEVATFYTMYNKNPVG-RHHIQVCTTTPCWLRGSDDVVHACKRKLGIGMGETTAD 130 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 G + EVEC GACVNAP+V IG D YED+ PE +E I+DA + +G+T +PG QI R S Sbjct: 131 GQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALA--RGETPKPGSQIGRQS 188 Query: 191 SAPAGGLTSL 200 S P GG T+L Sbjct: 189 SEPVGGPTTL 198 >gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1] gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1] Length = 229 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 14/214 (6%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59 AE + F+++ E+A ++I+RYPP R QSAV+PLL AQ Q +GW+ Sbjct: 11 AETRARWGGFAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPVP 70 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +E + L MAYIRV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + ++E C K Sbjct: 71 VMEYIGAQLGMAYIRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVLEACYKK 129 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +K +DG + EVEC GAC NAPMV I D YEDLT + + ++D + G Sbjct: 130 GLKKGA-TTADGLFTLTEVECLGACANAPMVQINDDNYEDLTFDSMTAVLDTLAAGGQPK 188 Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210 I GPQ++R +S P GG T+L + N RG+ Sbjct: 189 I--GPQVERQTSCPEGGPTTLQEMVSENHDYRGR 220 >gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633] gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633] Length = 346 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 10/222 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS RR+A E QP SF+F+E+S V +++YP R SAVIPLL AQ+Q+ WVS A Sbjct: 1 MSARRIAAE--QPESFAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A M YIRV E+ATFYT F L G + +QVCGTTPC LRG + L VC KI Sbjct: 59 MREIAARCGMPYIRVYEVATFYTMFNLEQTG-KHLIQVCGTTPCWLRGADDLKAVCEKKI 117 Query: 121 HQKPL-HRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175 +K H +SDG L+WEEVEC GAC NAPMV I G YEDLT E LE+++D G Sbjct: 118 GKKGREHVSSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAG 177 Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + ++ GP R S P L + S G + K K+ Sbjct: 178 K--EVKAGPISGRSCSEPTQATVKTLVDESLYDGSRAKKIKL 217 >gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter sp. SD-21] gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter sp. SD-21] Length = 223 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 128/212 (60%), Gaps = 19/212 (8%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 +F F+E ++ I+RYP R +SAV+PLL AQ Q +GW+ IE VA+ Sbjct: 18 GAFEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVAD 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRVLE+A+FY + + PVG + HVQVCGTTPCMLRG + L E C+ + +K H Sbjct: 78 YLDMPVIRVLEVASFYFMYNMVPVG-KYHVQVCGTTPCMLRGSDGLFETCKKRGMKKG-H 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRPG 183 + DG + EVEC G C APMV I D YEDLTPERL+EI+D + G + T PG Sbjct: 136 VSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDEILDELAAGKQPKSGTQEPG 195 Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRGKKK 212 R +S PAGG T+L +D N RG+ K Sbjct: 196 ----RHTSEPAGGPTTLKEMVDANHDYRGEWK 223 >gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S] gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S] Length = 222 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 131/214 (61%), Gaps = 14/214 (6%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ Sbjct: 11 AETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVP 70 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK Sbjct: 71 VMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 130 GLVKG-GTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGKQPR 188 Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210 I GPQIDR +S P GG T+L + N RG+ Sbjct: 189 I--GPQIDRQTSCPEGGPTTLKEMVGENHDYRGE 220 >gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] gi|115950058|ref|XP_001178801.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] Length = 242 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ + F F+EE+ VN++I+ YP +A +P+L AQ Q GW +A Sbjct: 31 LFVHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+ Sbjct: 91 MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T Sbjct: 150 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 207 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R +S P GGLTSL+D Sbjct: 208 KPGPRNARFASEPEGGLTSLID 229 >gi|307293266|ref|ZP_07573112.1| NADH-quinone oxidoreductase, E subunit [Sphingobium chlorophenolicum L-1] gi|306881332|gb|EFN12548.1| NADH-quinone oxidoreductase, E subunit [Sphingobium chlorophenolicum L-1] Length = 222 Score = 174 bits (442), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 97/213 (45%), Positives = 129/213 (60%), Gaps = 14/213 (6%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q GW+ Sbjct: 11 AETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPVP 70 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+NK Sbjct: 71 VMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 130 GLVKG-GTTPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPK 188 Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRG 209 I GPQI+R +S P GG T+L + N RG Sbjct: 189 I--GPQIERQTSCPEGGPTTLKEMVSGNHDYRG 219 >gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC 30864] Length = 255 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 119/198 (60%), Gaps = 11/198 (5%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 ++ F F+ E+ +I+ YPP +A IPLL AQ Q GW+ +A+ VA +LDM Sbjct: 46 YKDEPFEFTAENLTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWLPLSAMNTVAKMLDM 105 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRN 128 A IRV E A+FYT F +G + HVQVC TTPC+L GC +K+++ + + P Sbjct: 106 APIRVYETASFYTMFNREKIG-KYHVQVCTTTPCLLGGCGSDKIMKAVQKNLGVHPGGTT 164 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID- 187 SDG ++ EVEC GACVNAPM+ I D YEDLTPE E+I+D F +GD +PGPQ D Sbjct: 165 SDGLFTFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFR--RGDRPKPGPQKDP 222 Query: 188 -----RISSAPAGGLTSL 200 R S P GLT+L Sbjct: 223 ATGKLRKSCEPVDGLTTL 240 >gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter sp. SXCC-1] gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter sp. SXCC-1] Length = 216 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 126/214 (58%), Gaps = 10/214 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS + A E +P+ F F ++S + V+++YPP R S V+PLL Q+Q G Sbjct: 1 MSAQPSAPEGAEPTHFEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 W+ R A++VVA L+MA IRV E+ATFY F P+G R H+QVC TT C LRG + + Sbjct: 61 WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVTA 119 Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ K S DG + EVEC GAC NAP++ + D YEDL R EE+I A Sbjct: 120 ACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALK 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207 G+ T PGP IDR++SAPAGG L+ + ++K Sbjct: 180 RGERPT--PGPTIDRLNSAPAGGRKVLVGDMAQK 211 >gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] Length = 244 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 117/200 (58%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 33 LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+ Sbjct: 93 MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P + DG + VEC GACVNAPMV + D YEDL + +EEI+D+ QG Sbjct: 152 GIGPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDLEAKDVEEILDSLK--QGKRP 209 Query: 181 RPGPQIDRISSAPAGGLTSL 200 +PGP+ R+S P GGLTSL Sbjct: 210 KPGPRNGRLSCEPKGGLTSL 229 >gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes aegypti] gi|108878788|gb|EAT43013.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] Length = 240 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/202 (44%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ VN +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 29 LFVHRDTAEDNPSIPFEFTEENKKRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT HVQVC TTPC LRG ++++ C+ K+ Sbjct: 89 MHRVADILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTTTPCWLRGSDEIMTACKEKL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ + D YEDLT + EI+ QG Sbjct: 148 GIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLK--QGKVP 205 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 RPGP+ R +S P GGLTSL + Sbjct: 206 RPGPRNGRFASEPTGGLTSLTE 227 >gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521] gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521] Length = 269 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 115/188 (61%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74 F F+EE+A E+IS YP ++AVIPLL Q Q GWVS + + VA +L+M +R Sbjct: 69 FEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLGQRQNSGWVSISVMNYVAKLLEMPPMR 128 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT F PVG + +Q+C TTPCML GC K++E +K+ K D Sbjct: 129 VYEVATFYTMFNREPVG-KYFLQLCTTTPCMLGGCGSTKILEALESKLGIKAGQTTKDNK 187 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPM+ I D +EDLTPE + IID S G+ ++PGPQ R SS Sbjct: 188 FTLVEVECLGACANAPMIQINDDFFEDLTPESMNNIIDKLS--NGEKVKPGPQSGRHSSE 245 Query: 193 PAGGLTSL 200 PA G T+L Sbjct: 246 PANGRTAL 253 >gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Brugia malayi] gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Brugia malayi] Length = 234 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M V R +E + F F+ E+ + +IS+YPP A+IP+L AQ Q GW+ +A Sbjct: 23 MVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLAQRQHGWLPISA 82 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+ Sbjct: 83 MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 141 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K DG S EVEC GACVNAPMV I D YEDLTPE + +I+D F G+ Sbjct: 142 GIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTPEDISDILDEFKAGKRP-- 199 Query: 181 RPGPQIDRISSAPAGG 196 +PGP+ R ++ P G Sbjct: 200 KPGPRSGRTAAEPING 215 >gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8] gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8] Length = 257 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 119/186 (63%), Gaps = 4/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F F+ E+ E+I+RYPP ++AVIPLL Q Q +GW S + + VA +L M +R Sbjct: 59 FEFNAENLKRAEEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVARLLGMPPMR 118 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F P+G VQVC TTPCMLRG ++ N+++ KP + DG + Sbjct: 119 VYEVATFYTMFNREPIGEH-FVQVCTTTPCMLRGSTDILNTVCNELNVKPGGTSKDGKFT 177 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 EVECQGAC NAPM+++G D YEDLTPE + I+ AFS +G+ + GPQ +R +S + Sbjct: 178 VVEVECQGACSNAPMMVVGDDFYEDLTPESTKRILAAFS--KGEKPKAGPQSNRQTSENS 235 Query: 195 GGLTSL 200 GLT+L Sbjct: 236 AGLTAL 241 >gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp. IMCC9063] gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp. IMCC9063] Length = 199 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 129/205 (62%), Gaps = 8/205 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS + +A++ QP SF FS E+ + ++ +YP R +SAV+PLL AQ+Q +GW+S A Sbjct: 1 MSGKHVAKD--QPKSFIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A++L++ YI+V E+ATFYT + L+PVG + VQVC TTPC +RG K++E C+ Sbjct: 59 AVQYIADLLEVPYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCAIRGSGKIVEACKKY 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I H + D SW EVEC GACVNAPM+ I +D YEDL E+I +F + D Sbjct: 118 ISSNEGHLSEDKKSSWIEVECLGACVNAPMIQINEDYYEDLDAISAEKIFKSF---KDDN 174 Query: 180 I-RPGPQIDRISSAPAGGLTSLLDN 203 + + G Q R S P +LL N Sbjct: 175 LPKLGSQKGRKGSEPIKQRLTLLKN 199 >gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2 [Ictalurus punctatus] gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2 [Ictalurus punctatus] Length = 244 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 89/200 (44%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA ILD++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+ Sbjct: 95 KVAEILDVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ P Sbjct: 154 KVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP+ R S PAGGLTSL + Sbjct: 212 GPRNGRFSCEPAGGLTSLTE 231 >gi|126321913|ref|XP_001370300.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV2 [Monodelphis domestica] Length = 239 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 28 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKSYPEGHKAAAVLPVLDLAQRQNGWLPISA 87 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 88 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 146 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SD + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 147 GIKVGETTSDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKA--GNVP 204 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 205 KPGPRSGRFSCEPAGGLTSLTE 226 >gi|194214480|ref|XP_001489155.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Equus caballus] Length = 246 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 121/203 (59%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 35 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 94 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 95 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 153 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIIDA G TI Sbjct: 154 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDALKAG---TI 210 Query: 181 -RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 211 PKPGPRSGRFSCEPAGGLTSLTE 233 >gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82] Length = 245 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/188 (48%), Positives = 118/188 (62%), Gaps = 5/188 (2%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYI 73 +F F E+ E+IS YPP ++AVIPLL Q Q +GW S + + VAN+L M + Sbjct: 45 AFEFDTENMKRAQEIISFYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVANLLGMPPM 104 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGT 132 RV E+ATFYT F P+G VQVC TTPCMLRG +++ VC + KP SDG Sbjct: 105 RVYEVATFYTMFNREPIG-ENFVQVCTTTPCMLRGSPEILNTVCDHLGGIKPGQTTSDGK 163 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVECQGAC NAPM+++G D YEDLTPE ++I+ AF+ GQ + GPQ R +S Sbjct: 164 FTVVEVECQGACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQKP--KAGPQSGRRTSE 221 Query: 193 PAGGLTSL 200 + GLTSL Sbjct: 222 NSAGLTSL 229 >gi|118086790|ref|XP_001232141.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) isoform 1 [Gallus gallus] gi|118086792|ref|XP_424129.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) isoform 2 [Gallus gallus] Length = 245 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +IS YP +AV+ +L AQ Q GW+ +A Sbjct: 34 LFVHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSAAVMAVLDLAQRQHGWLPISA 93 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 94 MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 152 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 153 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 210 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 211 KPGPRSGRFSCEPAGGLTSLTE 232 >gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 119/189 (62%), Gaps = 3/189 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +SF+F+ E+ ++I++YP R QSAV+PLL AQ Q GW S A IE +A +L+MA I Sbjct: 8 TSFAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPI 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ TFYT + PVG + HVQVC C+LRG + + E + + + +DG Sbjct: 68 RVQEVVTFYTMYNQKPVG-QYHVQVCTNICCLLRGSDGVGETVKELLGVEWGETTADGKF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GACVNAPM+ I D YEDLTPE + +++A +G+T PGPQ R SAP Sbjct: 127 TLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALK--RGETPAPGPQGGRQFSAP 184 Query: 194 AGGLTSLLD 202 GG T+L D Sbjct: 185 EGGPTTLGD 193 >gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase-like [Bos taurus] Length = 254 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 43 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 102 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 103 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 161 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 162 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 219 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 220 KPGPRSGRFSCEPAGGLTSLTE 241 >gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus] Length = 212 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 1 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 61 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 119 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 120 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 177 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 178 KPGPRSGRFSCEPAGGLTSLTE 199 >gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Xenopus (Silurana) tropicalis] gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana) tropicalis] gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus (Silurana) tropicalis] Length = 243 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 114/198 (57%), Gaps = 3/198 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ E+ + +I YP AVIP+L AQ Q GW+ +A+ Sbjct: 34 VHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHKAGAVIPVLDLAQRQHGWLPISAMN 93 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L+M +RV E+ATFYT F PVG + HVQ+C TTPCML + ++E K+ Sbjct: 94 KVAEVLEMPAMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCMLCNSDSILEAIEKKLGI 152 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 SD + EVEC GACVNAPMV I + YEDLTP+ +E IID G+ T P Sbjct: 153 HVGETTSDKLFTLTEVECLGACVNAPMVQINDNYYEDLTPKDIENIIDELKAGKVPT--P 210 Query: 183 GPQIDRISSAPAGGLTSL 200 GP+ R S PAGGLTSL Sbjct: 211 GPRNGRFSCEPAGGLTSL 228 >gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 216 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 10/215 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G Sbjct: 1 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++ Sbjct: 61 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 119 Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ ++S DG + EVEC G C NAP++ + D YEDL R E+I+A Sbjct: 120 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +GD +PGP IDR+ +APAGG +L D+ + R Sbjct: 180 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSR 212 >gi|224046085|ref|XP_002190748.1| PREDICTED: putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata] gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata] Length = 244 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +I+ YP +AV+ +L AQ Q GW+ +A Sbjct: 33 LFVHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQRQHGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 93 MNKVAEVLEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 152 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G +DD Sbjct: 210 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRDD 243 >gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Bos taurus] gi|128865|sp|P04394|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH dehydrogenase subunit II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus] gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus] gi|296473660|gb|DAA15775.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Bos taurus] Length = 249 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Canis familiaris] Length = 249 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + +I YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Nomascus leucogenys] Length = 249 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter diazotrophicus PAl 5] Length = 219 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 10/215 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G Sbjct: 4 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 63 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++ Sbjct: 64 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 122 Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ ++S DG + EVEC G C NAP++ + D YEDL R E+I+A Sbjct: 123 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 182 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +GD +PGP IDR+ +APAGG +L D+ + R Sbjct: 183 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSR 215 >gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Anoplopoma fimbria] gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Anoplopoma fimbria] Length = 244 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 3/200 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R + + F F+EE+ + + +IS YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPDNNADTPFDFTEENKMRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++A +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+ Sbjct: 95 KVAEVLEVAPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K D + EVEC GACVNAPMV I + YEDL+P+ +E+IID G+ P Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGR--VPLP 211 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP+ R S PAGGLTSL++ Sbjct: 212 GPRNGRFSCEPAGGLTSLIE 231 >gi|109121568|ref|XP_001099724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Macaca mulatta] Length = 249 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii] Length = 213 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--MP 189 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTE 211 >gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis] Length = 451 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 204 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 263 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 264 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 322 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 323 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 380 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 381 KPGPRSGRFSCEPAGGLTSLTE 402 >gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2 [Oryctolagus cuniculus] Length = 249 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii] Length = 213 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTE 211 >gi|221127644|ref|XP_002160547.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Hydra magnipapillata] Length = 243 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+EE+ + +IS YP +A IPLL Q Q GWV + Sbjct: 32 LFVHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPLSG 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L M +RV E+ATFYT F PVG + H+Q+C TTPCML + ++ V + K+ Sbjct: 92 MNYVAKMLQMPEMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLCNSDSIMSVIKEKL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P D + EVEC GACVNAPMV I + YEDL P + EII+ S +G Sbjct: 151 QINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIE--SLAKGIIP 208 Query: 181 RPGPQIDRISSAPAGGLTSL 200 +PGP+ R +S PAGGLTSL Sbjct: 209 KPGPRSGRFASEPAGGLTSL 228 >gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Ailuropoda melanoleuca] Length = 249 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 222 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 124/210 (59%), Gaps = 19/210 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 SF+++ E+A E+++RYP R +SAV+PLL AQ Q +GW+ +E VA Sbjct: 18 GSFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVGAEENTQGWLPMPVMEYVAR 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRVLE+ATFYT + + PVG R HVQVCGTTPCMLRG + ++ C + +K H Sbjct: 78 YLDMPIIRVLEVATFYTMYNIQPVG-RFHVQVCGTTPCMLRGSDDILSACYARGLKKG-H 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRPG 183 DG + EVEC G C +APMV I D YEDLT +RL ++D + G + T PG Sbjct: 136 TTKDGLFTLTEVECMGNCSSAPMVQINDDNYEDLTADRLNFVLDELAAGRQPKAGTQEPG 195 Query: 184 PQIDRISSAPAGG---LTSLLDNNSKKRGK 210 R + P GG LT+++ N RG+ Sbjct: 196 ----RHTVEPVGGPTSLTAMVTENHDYRGE 221 >gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Callithrix jacchus] Length = 249 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis] Length = 244 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/200 (44%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+EE+ + +IS YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTAENNPETPFEFTEENKKRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPLSAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++ +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+ Sbjct: 95 KVAEVLEIPPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEALQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ P Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGR--VPPP 211 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP+ R S PAGGLTSL + Sbjct: 212 GPRGGRFSCEPAGGLTSLTE 231 >gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Sporisorium reilianum] Length = 268 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74 F F+ E+A E+IS YP ++AVIPLL Q Q GWVS + + VA +LDM +R Sbjct: 68 FEFNAENAKMAQEIISHYPSQYKKAAVIPLLDLGQRQNSGWVSISVMNYVAKLLDMPPMR 127 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT F PVG + +Q+C TTPCML GC K++E +K+ K D Sbjct: 128 VYEVATFYTMFNREPVG-QFFLQLCTTTPCMLGGCGSTKILEALEDKLGIKAGQTTKDKK 186 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPM+ I D YEDLTPE + IID ++GQ ++PGPQ R SS Sbjct: 187 FTLVEVECLGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQ--KVKPGPQSGRHSSE 244 Query: 193 PAGGLTSL 200 A G T+L Sbjct: 245 AATGRTAL 252 >gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx] Length = 213 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEXIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189 Query: 181 RPGPQIDRISSAPAGGLTSL 200 +PGP+ R S PAGGLTSL Sbjct: 190 KPGPRSGRFSCEPAGGLTSL 209 >gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca] Length = 209 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + + Sbjct: 11 TPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLKVPPM 70 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ K D Sbjct: 71 RVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLF 129 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R S P Sbjct: 130 TLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKPGPRSGRFSCEP 187 Query: 194 AGGLTSLLD 202 AGGLTSL + Sbjct: 188 AGGLTSLTE 196 >gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa] gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa] Length = 236 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+ E+ + ++S+YPP A+IP+L AQ Q GW+ +A Sbjct: 25 LVVHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLAQRQHGWLPISA 84 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+ Sbjct: 85 MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 143 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SDG + EVEC GACVNAPMV I D YEDLTP+ + +I+D F G+ Sbjct: 144 GIKVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTPKDISDILDEFKAGKRP-- 201 Query: 181 RPGPQIDRISSAPAGG 196 +PGP+ R ++ P G Sbjct: 202 KPGPRSGRTAAEPISG 217 >gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170] gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170] Length = 208 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 117/189 (61%), Gaps = 3/189 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP++F+F+ E+ ++++YP R +S V+PLL AQ Q+GWVS AAIE V + Sbjct: 10 QPATFAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTP 69 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +RVLE+ATFYT ++LSP G R H++VC PC LRG ++++ R+++ + DG Sbjct: 70 RMRVLEVATFYTMYKLSPKG-RHHIEVCTNLPCWLRGSDEILRAVRDELGIEVGGETDDG 128 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 S E EC GACVNAPM+ IG D YEDLT E + E++ G+ + PG Q R + Sbjct: 129 LFSLAEAECLGACVNAPMLQIGDDYYEDLTYESVRELVRKLKVGE--PVTPGSQSGRQGA 186 Query: 192 APAGGLTSL 200 P GG T+L Sbjct: 187 CPEGGPTTL 195 >gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium bathyomarinum JL354] Length = 222 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 125/210 (59%), Gaps = 19/210 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 +F+F+ + + ++RYP R +SAV+PLL AQ Q +GW+ IE VAN Sbjct: 18 GNFAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVAN 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRVLE+ATFY + ++PVG + HVQVCGTTPCMLRG + +I C+ + +K Sbjct: 78 YLDMPVIRVLEVATFYFMYNMTPVG-KYHVQVCGTTPCMLRGSDDIIAACKKRGMKKG-E 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183 + DG + EVEC G C APMV I D YEDLT ERL+ ++DA + G+ T PG Sbjct: 136 VSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVLDALAKGEQPKTGTQEPG 195 Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRGK 210 R +S P+GG T+L + N RG+ Sbjct: 196 ----RHTSEPSGGPTTLKEMVTENHDYRGE 221 >gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Meleagris gallopavo] Length = 243 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +I YP +AV+ +L AQ Q GW+ +A Sbjct: 32 LFVHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 92 MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 151 GIEVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 208 Query: 181 RPGPQIDRISSAPAGGLTSL 200 +PGP+ R S PAGGLTSL Sbjct: 209 KPGPRSGRFSCEPAGGLTSL 228 >gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4] gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4] gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4] Length = 270 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 122/208 (58%), Gaps = 9/208 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E F FSE++ + E+I+RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LHVHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L GC +K+++ Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF------ 172 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++E++ A Sbjct: 158 HLGITPGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKELLTALKESATA 217 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSL 200 ++GQ PGP RIS + GLT+L Sbjct: 218 TSGQVKIPAPGPLSGRISCENSAGLTNL 245 >gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus furcatus] Length = 244 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/198 (43%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA IL+++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+ Sbjct: 95 KVAEILEVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ P Sbjct: 154 EVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211 Query: 183 GPQIDRISSAPAGGLTSL 200 GP+ R S PAGGLTSL Sbjct: 212 GPRNGRFSCEPAGGLTSL 229 >gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus mordax] Length = 244 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 117/190 (61%), Gaps = 5/190 (2%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F++E+ + +IS YP Q+A IP+L AQ Q GW+ +A+ VA +L++ + Sbjct: 46 TPFEFTDENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISAMNKVAEVLEVPPM 105 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ K D Sbjct: 106 RVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCNSDSILEAIKNKLGIKVGETTPDKMF 164 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-RPGPQIDRISSA 192 S EVEC GACVNAPMV I + YEDL+P+ +EEIID G TI PGP+ R S Sbjct: 165 SLIEVECLGACVNAPMVQINDNYYEDLSPKDIEEIIDELKAG---TIPAPGPRNGRFSCE 221 Query: 193 PAGGLTSLLD 202 PAGGLT L + Sbjct: 222 PAGGLTCLTE 231 >gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter litoralis HTCC2594] gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter litoralis HTCC2594] Length = 222 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 125/208 (60%), Gaps = 19/208 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 +F F+ + ++ I++YP R +SAV+PLL AQ Q +GW+ +E VA+ Sbjct: 18 GNFVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVGEETNTQGWLPLPVMEYVAD 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRV+E+ATFY + L PVG + HVQVCGTTPCMLRG +++I C+ + +K Sbjct: 78 YLDMPVIRVVEVATFYFMYNLQPVG-KYHVQVCGTTPCMLRGSDEIIAACKKRGMEKG-R 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183 ++DG + EVEC G C APMV I D YEDLTPERL+ ++DA + G+ T PG Sbjct: 136 VSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVLDALAAGEQPKTGTQEPG 195 Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKR 208 R +S P GG T+L +D N R Sbjct: 196 ----RHTSEPLGGPTTLKEMVDANHDYR 219 >gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Anolis carolinensis] Length = 289 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + +++ YP +AVIP+L AQ Q GW+ +A Sbjct: 78 LFVHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKSAAVIPVLDLAQRQHGWLPISA 137 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL M +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 138 MNKVAEILKMPPMRVYEVATFYTMYNRKPVG-KHHIQICTTTPCMLRDSDSILEAIQQKL 196 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SD + EVEC GACVNAPMV I + YEDLT + +E+I+D G+ Sbjct: 197 GIKVGETTSDQLFTLTEVECLGACVNAPMVQINDNYYEDLTTKDIEDILDELKAGK--VP 254 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S P GGLTSL + Sbjct: 255 KPGPRNGRFSCEPVGGLTSLTE 276 >gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C] gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389] gi|122990931|sp|Q1RJJ1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C] gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389] Length = 167 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++FSF +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L PVG + H+QVC TTPC LRG + +++ C+ K+ K D Sbjct: 66 MRAYEVATFYTMFNLKPVG-KNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S E+EC GACVNAP+V I D YEDLTPE++E IID Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKL 164 >gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Acyrthosiphon pisum] Length = 240 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 29 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+ Sbjct: 89 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T Sbjct: 148 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGKTPT- 206 Query: 181 RPGPQIDRISSAPAGGLTSL 200 PGP+ R +S P GLTSL Sbjct: 207 -PGPRSSRYASEPMDGLTSL 225 >gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Rattus norvegicus] gi|83305118|sp|P19234|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus] gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a [Rattus norvegicus] Length = 248 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R PAGGLTSL + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235 >gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3) [Rattus norvegicus] Length = 241 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 30 LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 90 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ Sbjct: 149 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R PAGGLTSL + Sbjct: 207 KPGPRSGRFCCEPAGGLTSLTE 228 >gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Macaca mulatta] Length = 249 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCML + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLGNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus] Length = 248 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R PAGGLTSL + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235 >gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii ATCC 23769] Length = 219 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 11/222 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS + + +P++F+F ES + +++++YPP R S VIPLL Q+Q G Sbjct: 1 MSAQSNIPHDAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ VA+ L+MA IRV E+ATFY F P+G + H+QVC TT C LRG + + Sbjct: 61 WVPRVAMDAVAHRLEMAPIRVYEVATFYLMFNTKPIG-KYHLQVCTTTSCWLRGSDDVTA 119 Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ S DG + EVEC GAC NAP++ + D YED+ R E+I A Sbjct: 120 ACKAATGIDAFGGTSADGMFTMTEVECLGACANAPILQVDDDYYEDMDGPRTTELIAALR 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +G+ + GP IDR+ SAP GG +LLD ++ +G +D+ Sbjct: 180 --RGERPKAGPTIDRMDSAPVGGRKTLLD-SAAGQGTGTQDN 218 >gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Mus musculus] gi|146345463|sp|Q9D6J6|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus] gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus] gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus] gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus] gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus] gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus] Length = 248 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R PAGGLTSL + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235 >gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum] Length = 212 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 1 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+ Sbjct: 61 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 119 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T Sbjct: 120 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 177 Query: 181 RPGPQIDRISSAPAGGLTSL 200 PGP+ R +S P GLTSL Sbjct: 178 TPGPRSSRYASEPMDGLTSL 197 >gi|115502496|sp|Q0MQI8|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|115502498|sp|Q0MQI7|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla] gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus] Length = 249 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Pan troglodytes] gi|115502497|sp|Q0MQI9|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes] Length = 249 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens] gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens] Length = 249 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus] Length = 259 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 48 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 224 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R PAGGLTSL + Sbjct: 225 KPGPRSGRFCCEPAGGLTSLTE 246 >gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens] Length = 249 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGESTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Danio rerio] gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio] Length = 244 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 117/200 (58%), Gaps = 3/200 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ E+ V +I+ YP +A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIINNYPEGHKAAATIPVLDLAQRQNGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L +A +RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 95 KVAEVLGIAPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K +D + EVEC GACVNAPMV I + YEDL P +E+IID G+ P Sbjct: 154 KVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGR--VPPP 211 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP+ R S PAGGLTSL + Sbjct: 212 GPRSGRFSCEPAGGLTSLTE 231 >gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Oncorhynchus mykiss] Length = 265 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 56 VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 115 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 116 KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGI 174 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ P Sbjct: 175 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPP 232 Query: 183 GPQIDRISSAPAGGLTSL 200 GP+ R S PAGGLTSL Sbjct: 233 GPRNGRFSCEPAGGLTSL 250 >gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Homo sapiens] gi|20455499|sp|P19404|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] Length = 249 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens] Length = 249 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Pongo abelii] Length = 249 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKIGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|149641744|ref|XP_001507932.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Ornithorhynchus anatinus] Length = 266 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + + Sbjct: 68 TPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLGVPPM 127 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFYT + PVG + HVQVC TTPCMLR + ++E + K+ K D Sbjct: 128 RVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTPDKLF 186 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +PGP+ R S P Sbjct: 187 TLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPGPRSGRFSCEP 244 Query: 194 AGGLTSLLD 202 AGGLTSL + Sbjct: 245 AGGLTSLTE 253 >gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] gi|108878789|gb|EAT43014.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] Length = 207 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 86/196 (43%), Positives = 113/196 (57%), Gaps = 11/196 (5%) Query: 15 SFSFSEESAIW--------VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 S F+ A W VN +++ YP + A+IPLL AQ Q GW+ +A+ VA+ Sbjct: 2 SMRFAHVLAAWLHQGHSQRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVAD 61 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 IL + +RV E+ATFYT F P GT HVQVC TTPC LRG ++++ C+ K+ Sbjct: 62 ILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTTTPCWLRGSDEIMTACKEKLGIGAGE 120 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 DG + EVEC GACVNAPM+ + D YEDLT + EI+ QG RPGP+ Sbjct: 121 TTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLK--QGKVPRPGPRN 178 Query: 187 DRISSAPAGGLTSLLD 202 R +S P GGLTSL + Sbjct: 179 GRFASEPTGGLTSLTE 194 >gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Sus scrofa] gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa] Length = 249 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 116/202 (57%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F E+ + YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens] gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens] Length = 209 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 112/185 (60%), Gaps = 3/185 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+E+S ++I+ YP +A+IPLL AQ Q GW+ A+ VA+ L ++ +R+ Sbjct: 13 FEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNYVADYLSVSRMRI 72 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT F P+G + H+Q+C TTPCMLR + ++ V ++K+ + DG + Sbjct: 73 YEVATFYTMFNRYPMG-KYHIQICTTTPCMLRDSDSILNVIKSKLGIEIGQTTKDGLFTL 131 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 EVEC GACVNAPMV I D YEDLT +EEI+D+ G T GP+ R + P Sbjct: 132 SEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAGSKPTA--GPRSGRKCAEPIT 189 Query: 196 GLTSL 200 GLTSL Sbjct: 190 GLTSL 194 >gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox lucius] Length = 244 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/198 (43%), Positives = 117/198 (59%), Gaps = 3/198 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ + ++ +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 35 VHRDTPENNPDTPFEFTADDLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISATN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++ +RV E+ATFYT PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 95 KVAEVLEVPPMRVYEVATFYTMLLRQPVG-KYHIQICTTTPCMLCNSDSILEAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K +D S EVEC GACVNAPMV I + YEDLTP+ +++IID G+ P Sbjct: 154 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLTPKDMDKIIDELKAGK--IPPP 211 Query: 183 GPQIDRISSAPAGGLTSL 200 GP+ R S PAGGLTSL Sbjct: 212 GPRNGRFSCEPAGGLTSL 229 >gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium aromaticivorans DSM 12444] gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM 12444] Length = 222 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 125/208 (60%), Gaps = 15/208 (7%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 F ++ E+A ++++RYP R +SAV+PLL AQ Q +GW+ +E VA+ Sbjct: 18 GGFEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQGWLPIPVMEYVAS 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRV+E+ATFYT + ++P+G R HVQVCGTTPCMLRG + ++ C+ K +K H Sbjct: 78 YLDMPVIRVVEVATFYTMYNIAPIG-RFHVQVCGTTPCMLRGSDDILAACKGKGLKKG-H 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 DG + EVEC G C +APMV I D YEDLT +E I+D + +G + G Q+ Sbjct: 136 TTPDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELA--EGKQPKTGTQL 193 Query: 187 -DRISSAPAGG---LTSLLDNNSKKRGK 210 R + PAG LT+++ N RG+ Sbjct: 194 PGRHTVEPAGALSNLTAMVTENHDYRGE 221 >gi|119113027|ref|XP_308018.3| AGAP002170-PA [Anopheles gambiae str. PEST] gi|116132852|gb|EAA03768.3| AGAP002170-PA [Anopheles gambiae str. PEST] Length = 231 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ ++ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 20 LFVHRDTPEDNASIPFEFTADNQKRAEAILNIYPEGHKRGAMIPLLDLAQRQHGWLPLSA 79 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + ++RV E+ATFYT F P G + H+QVC TTPC LRG +++++VC+ + Sbjct: 80 MHKVADILGLPHMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEVLDVCKKNL 138 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ + D YEDL+ EEI+++ QG Sbjct: 139 GIGVGETTKDGKFTISEVECLGACVNAPMLAVNDDYYEDLSVADTEEILNSLK--QGQQP 196 Query: 181 RPGPQIDRISSAPAGGLTSL 200 RPGP+ R +S P G LTSL Sbjct: 197 RPGPRNGRYASEPVGQLTSL 216 >gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo salar] Length = 244 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 95 KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K +D S EVEC GACVNAPMV I + YEDL+P+ +++I+D G+ P Sbjct: 154 KAGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQILDELKAGK--VPPP 211 Query: 183 GPQIDRISSAPAGGLTSL 200 GP+ R S PAGGLTSL Sbjct: 212 GPRNGRFSCEPAGGLTSL 229 >gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens] Length = 231 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 118/202 (58%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 20 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 79 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + ++QVC TTPCMLR + ++E + K+ Sbjct: 80 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYYIQVCTTTPCMLRNSDSILEAIQKKL 138 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 139 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 196 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 197 KPGPRSGRFSCEPAGGLTSLTE 218 >gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas reinhardtii] gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas reinhardtii] gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas reinhardtii] Length = 282 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 15/208 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLL-MRAQEQEGWVSRA 59 ++ + E +SF FSE + VN++I+RYPP+ QSA+IP+L + QE GW+S A Sbjct: 48 FNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLSLA 107 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +LDMA IRV E+ATFYT F + +G + HVQ+CGTTPC L+G +K+ E Sbjct: 108 AMNRVAKLLDMAPIRVYEVATFYTMFNRTKIG-KYHVQICGTTPCRLQGSQKIEEAITKH 166 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEII 169 + DG + E+EC GACVNAPMV I T YEDLTP+ + I+ Sbjct: 167 LGIGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNIL 226 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGL 197 D +G +PG Q R+ + PAG + Sbjct: 227 DTIK--KGGKPKPGSQY-RLKAEPAGAV 251 >gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea okayama7#130] gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea okayama7#130] Length = 245 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F F + E+I+RYPP ++AVIPLL Q Q +GW S + + VA +L+M +R Sbjct: 46 FEFDAANMKRAQEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLEMPAMR 105 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTL 133 V E+ATFYT F P+G + +Q+C TTPCML G ++ + KP DG Sbjct: 106 VYEVATFYTMFNREPIG-QNFIQLCTTTPCMLCGSTNILNTISEHLGGIKPGQTTKDGKF 164 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVECQGAC NAPM+++ D YEDLTPE ++I+DAF+ +G+ +PGPQ R +S Sbjct: 165 TLVEVECQGACSNAPMMVVNDDYYEDLTPESTKKILDAFA--RGEKPKPGPQSSRHTSEN 222 Query: 194 AGGLTSL 200 + GLT+L Sbjct: 223 SAGLTNL 229 >gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii] Length = 201 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ E+ + +++ YP +AV+P+L AQ Q GW+ +A Sbjct: 8 LFVHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPISA 67 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 68 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 126 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I YEDLTP+ +EEIID G+ Sbjct: 127 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDELKAGK--IP 184 Query: 181 RPGPQIDRISSAPAGGL 197 +PGP+ R S PAGGL Sbjct: 185 KPGPRSGRFSCEPAGGL 201 >gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5] gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5] Length = 167 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKQVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT E++E+IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMEKIIDKL 164 >gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199] gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199] Length = 223 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS + +AE++ QP+SF+++ +S + ++++YP R SAV+PLL AQ Q + W+ A Sbjct: 1 MSSKPIAEDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A LDMA IRVLE+ATFYT + L+PVG + +Q C TTPC LRG ++++ ++K Sbjct: 61 AIDAIAARLDMARIRVLEVATFYTMYNLAPVG-KWFLQACTTTPCWLRGSDQMMRCIKDK 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + R +DG S EVEC GACVNAP++ + D YED+ E +IDA G+ Sbjct: 120 LGLDNHGRTADGQFSLLEVECLGACVNAPILQVNDDFYEDMDYETTATLIDALKRGEPPV 179 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 + G R +S G TSL Sbjct: 180 V--GSMKGRQTSQSIAGPTSL 198 >gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTS L+ K G K + D Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247 >gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTS L+ K G K + D Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247 >gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 249 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F F+ E+ +E+I+RYPP ++A +P+L Q Q +GW S + + VA +LDM +R Sbjct: 49 FEFTPENLKRAHEIIARYPPQYKKAAALPILDLGQRQNKGWTSISVMNAVAKLLDMPKMR 108 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT + PV VQ+C TTPC L GC K++E + + P DG Sbjct: 109 VYEVATFYTMYNREPVAPN-FVQLCTTTPCQLGGCGSTKILETIESHLGVHPGQTTKDGK 167 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 ++ EVEC GAC NAPM+ IG D YEDLTPE +I+DA + +G+ +PGPQ R +S Sbjct: 168 FTFVEVECLGACSNAPMMQIGDDYYEDLTPETTVKILDALA--RGEKPKPGPQSGRQTSE 225 Query: 193 PAGGLTSL 200 + GLT+L Sbjct: 226 NSAGLTTL 233 >gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTS L+ K G K + D Sbjct: 211 --KPGPQNGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247 >gi|227297|prf||1701345A NADH dehydrogenase FeS protein Length = 249 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QV TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVGTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236 >gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of Ixodes scapularis] gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of Ixodes scapularis] Length = 164 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 3 TNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEMPY 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L PVG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 63 MRAYEVATFYTMFNLKPVG-KYHIQVCTTTPCWLRGSDHIMKICEKKLGVKLKETTEDQK 121 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP++ I D YEDLT E++E IID Sbjct: 122 FTLSEIECLGACVNAPVIQINDDYYEDLTQEKMETIIDKL 161 >gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238663550|emb|CAZ34426.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Schistosoma mansoni] Length = 248 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 123/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F FS E+ ++ +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPQMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEVILNALKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E I++ G+ Sbjct: 151 NLGIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEEIKAGKKP 210 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTS L+ K G K + D Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKSPGFKVRSD 247 >gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255] Length = 268 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 115/195 (58%), Gaps = 9/195 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSE++ +E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 53 FKFSEQNLKLADEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARMLEMPPMRV 112 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQ+C TTPC L GC +++ + P H DG Sbjct: 113 YEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSTAIVKAITEHLGITPGHTTEDGLF 171 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTI-RPGPQID 187 ++ EVEC GACVNAPMV I D YEDLTPE ++ I+ A +TG G I PGP Sbjct: 172 TFTEVECLGACVNAPMVQINDDYYEDLTPESIKTILTALKDSATATGAGAKIPAPGPLSG 231 Query: 188 RISSAPAGGLTSLLD 202 R + + GLT+L D Sbjct: 232 RDTCENSAGLTNLTD 246 >gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01] gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01] gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-03] gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-07] gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-22] gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-26] gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-32] gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-12] Length = 213 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 121/208 (58%), Gaps = 12/208 (5%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65 QP SF+F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A Sbjct: 10 QPESFAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK--IHQK 123 + L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR IH Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++DG + EVEC GAC NAP++ + D YED+ R E +I G+ G Sbjct: 129 G-ETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRKP--EAG 185 Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKK 211 P I+R+ SAP GG +LL+ ++ +K Sbjct: 186 PTINRMCSAPEGGRKTLLETSASSPDQK 213 >gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis RB2256] gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis RB2256] Length = 222 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 118/202 (58%), Gaps = 12/202 (5%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59 AE + +F+++ E+A VI+RYP R +SAV+PLL AQ Q +GW+ Sbjct: 11 AETRARWGAFAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVP 70 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 IE VA LDM +IR E+ATFYT + L+PVG R HVQVCGTTPC+LRG + + C+N+ Sbjct: 71 VIEYVAAQLDMPFIRAYEVATFYTMYNLAPVG-RYHVQVCGTTPCLLRGSDDVTAACKNR 129 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG-QGD 178 K DG + EVEC G C NAPMV I D YEDL + + I+D + G Q Sbjct: 130 GMVKG-KTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGKQPK 188 Query: 179 TIRPGPQIDRISSAPAGGLTSL 200 T P+ R +S P GG T+L Sbjct: 189 TGTQNPR--RHTSEPEGGPTTL 208 >gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford] gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford] Length = 167 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L VG + H+ VC TTPC LRG + ++++C+ K+ K D Sbjct: 66 MRAYEVATFYTMFNLKRVG-KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + E+EC GACVNAP++ I D YEDLTPE++E++ID Sbjct: 125 FTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLID 162 >gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001] gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001] Length = 213 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 117/207 (56%), Gaps = 10/207 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65 QP SF F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A Sbjct: 10 QPDSFVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128 Query: 126 HRNSD-GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 SD G + EVEC GAC NAP++ + D YED+ R E +I G+ GP Sbjct: 129 GETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRHP--EAGP 186 Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211 I+R+ SAP GG +LL+ ++ +K Sbjct: 187 AINRMCSAPEGGRKTLLETSASSSDQK 213 >gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger] Length = 269 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 125/212 (58%), Gaps = 11/212 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQYKKAAVMPVLDVGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L GC +K+++ Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----S 173 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A + Sbjct: 158 HLGITPGHTTEDGLFTFVEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217 Query: 174 TGQGDTIR---PGPQIDRISSAPAGGLTSLLD 202 T G T++ PGP R + + GLT+L++ Sbjct: 218 TEAGQTVKVPAPGPLSGRDTCENSAGLTNLIE 249 >gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni] gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni] Length = 242 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ILD+ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILDLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV + D YEDLT + +++I+ S + D I Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDIL---SDLKADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S PAG TSL Sbjct: 207 SPPGPRNGRFASEPAGNATSL 227 >gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818] Length = 251 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 4/203 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R +EE + F F++ + V +I ++PP+ +A IP+L AQ Q GW+ Sbjct: 37 LFVHRDSEENNDETPFKFTDSNMKRVEAIIGQFPPNHRSAACIPVLDLAQRQNNGWLPLN 96 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA IL M +RV E+ATFYT F PVG + H+QVC TTPCM+RG K+ + + K Sbjct: 97 AMNEVAKILRMPKMRVYEVATFYTMFNREPVG-KYHIQVCTTTPCMVRGAYKVFDHLKAK 155 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + D + EVEC GAC NAPM+ I + YEDLT E ++ I+D G+ T Sbjct: 156 LGLENGETSDDKLFTLLEVECLGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGK--T 213 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PGPQ R ++ P G T+LL+ Sbjct: 214 PKPGPQSGRNAAEPLSGQTTLLE 236 >gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 260 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 7/191 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FKFSKENEKIIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQVC TTPC L GC +K+++ N + P H DG Sbjct: 114 YEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINNHLGITPGHTTDDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----STGQGDTIRPGPQIDRI 189 ++ EVEC GACVNAPMV I D YEDLTPE + +++ A + PGP R Sbjct: 173 TYIEVECLGACVNAPMVQINDDYYEDLTPESIVQLLTALKESATNPAAKVPAPGPLSGRE 232 Query: 190 SSAPAGGLTSL 200 + + GLT+L Sbjct: 233 TCENSAGLTNL 243 >gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Ciona intestinalis] Length = 242 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 3/187 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F++++ + + + YP +AV+P+L AQ Q GW+ +A+ VA +LD+ + Sbjct: 44 TPFDFTKKNYERIEAIKANYPEGHKVAAVMPILDLAQRQHGWLPISAMNKVAELLDVPPM 103 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFYT + +P+G + H+Q+C TTPCML G + ++EV + K+ K DG Sbjct: 104 RVYEVATFYTMYNRNPIG-KYHLQLCTTTPCMLCGSDGILEVIQKKLGIKVGETTKDGLF 162 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + E EC GACVNAPM+ I YEDL P +EEI+D + G+ +PGP+ +R + P Sbjct: 163 TLMEAECLGACVNAPMIQINDMYYEDLKPSDMEEILDDLTNGR--EPKPGPRSERFACEP 220 Query: 194 AGGLTSL 200 GGLTSL Sbjct: 221 LGGLTSL 227 >gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17] gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 19/210 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 +F++++E+ NE+++RYP R QS IP L AQ Q +GW+ IE VA Sbjct: 18 GNFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPVPVIEFVAR 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 L +AY+R+ E+ATFYT F L+PVG R HVQVCGTTPCMLRG + ++ C+NK K Sbjct: 78 QLGVAYMRIYEVATFYTMFNLAPVG-RYHVQVCGTTPCMLRGSDDVLAACKNKGLIKG-K 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG---DTIRPG 183 DG + EVEC G C +APMV I D +EDL +R I++A + G+ T PG Sbjct: 136 TTPDGLFTLTEVECMGNCASAPMVQINDDNFEDLDYDRTVTILEALARGESPKTGTQEPG 195 Query: 184 PQIDRISSAPAGG---LTSLLDNNSKKRGK 210 R + P GG LT+++ +N RG+ Sbjct: 196 ----RHTVEPLGGPTTLTAMVGDNHDYRGE 221 >gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1] gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1] Length = 222 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 121/209 (57%), Gaps = 19/209 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66 SF +S+E+ + I++YP R +SAV+ LL Q Q +GW+ IE +A+ Sbjct: 18 GSFEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVGEETDTQGWLPLPVIEYIAD 77 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 LDM IRVLE+ATFY + + PVG + HVQVCGTTPCMLRG + +I C+ + Sbjct: 78 YLDMPVIRVLEVATFYFMYNMKPVG-KYHVQVCGTTPCMLRGSDDIISACKKR-GMGFGK 135 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183 + DG + EVEC G C APMV I D YEDLT ERL+ ++DA + G+ T PG Sbjct: 136 VSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVLDALAAGEQPKTGTQEPG 195 Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRG 209 R +S P+GG T+L +D N RG Sbjct: 196 ----RHTSEPSGGPTTLKEMVDANHDYRG 220 >gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus flavus NRRL3357] gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae] gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus flavus NRRL3357] Length = 270 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 11/195 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+F+E++ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQ+C TTPC L GC K++E + + P H DG Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITPGHTTEDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185 + EVEC GACVNAPMV I D YEDLTPE ++ ++ A +T G T++ PGP Sbjct: 173 TLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATATDAGKTVQIPAPGPM 232 Query: 186 IDRISSAPAGGLTSL 200 R + + GLT+L Sbjct: 233 SGRNTCENSAGLTNL 247 >gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b [Rattus norvegicus] Length = 227 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 3/179 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT Sbjct: 39 VRIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 98 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GA Sbjct: 99 MYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGA 157 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 CVNAPMV I D YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL + Sbjct: 158 CVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKPGPRSGRFCCEPAGGLTSLTE 214 >gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel] gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel] Length = 167 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 +SF F +++ +++ +YPP +SA++PLL AQ Q G W+S AIE VAN+L +AY Sbjct: 6 TSFIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L P+G + H++VC TTPC LRG +I+ C K+ K D Sbjct: 66 MRAYEVATFYTMFNLKPIG-KHHIKVCTTTPCWLRGSSDIIKTCEQKLGIKEQEVTKDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S E+EC GACVNAP+V I D YEDLT E++E I+D Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTQEKMENILDKL 164 >gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Cryptococcus gattii WM276] gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Cryptococcus gattii WM276] Length = 249 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 122/211 (57%), Gaps = 15/211 (7%) Query: 2 SVRRLAEEEF--------QPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52 S RL+E F PS F F+ E+ +E+ISRYPP ++A +P+L Q Q Sbjct: 26 STSRLSESLFVHRDTDYNNPSIPFEFTPENLKRAHEIISRYPPQYKKAAALPILDLGQRQ 85 Query: 53 -EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC-- 109 +GW S + + VA +LDM +RV E+ATFYT + PV VQ+C TTPC L GC Sbjct: 86 NKGWTSISVMNAVAKLLDMPRMRVYEVATFYTMYNREPVAPN-FVQLCTTTPCQLGGCGS 144 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 K++E + + P DG ++ EVEC GAC NAPM+ IG + YEDLTPE +I+ Sbjct: 145 TKILETIESHLGIHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDEYYEDLTPETTIKIL 204 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 D + +G+ +PGPQ R +S + GLT+L Sbjct: 205 DTLA--RGEKPKPGPQSGRQTSENSAGLTTL 233 >gi|17561328|ref|NP_506376.1| hypothetical protein F53F4.10 [Caenorhabditis elegans] gi|6647669|sp|Q20719|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; Flags: Precursor gi|3877525|emb|CAB01203.1| C. elegans protein F53F4.10, confirmed by transcript evidence [Caenorhabditis elegans] Length = 239 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVAKILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+ Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAA 205 Query: 181 RPGPQIDRISSAPAGGLTSL 200 GP+ R+++ P G LTSL Sbjct: 206 --GPRSGRLAAEPFGELTSL 223 >gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322] Length = 215 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 7/214 (3%) Query: 1 MSVR-RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSR 58 MS+ R+AE+ QP+SF+F+ E+ + +I++YP R SAV+PLL AQ Q E W+ Sbjct: 1 MSIEARIAED--QPNSFAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPM 58 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 AIE++A+ LDMA IRVLE+ATFYT F L PVG + +Q C TTPC LRG ++++ ++ Sbjct: 59 KAIELIADKLDMAKIRVLEVATFYTMFNLKPVG-KYFLQACTTTPCWLRGSDEMMRCIKD 117 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + + G S EVEC GACVNAP++ + D YEDL + ++D+ + Sbjct: 118 RYGITSGQTSDCGRFSLLEVECLGACVNAPILQVNDDFYEDLNYQSTGALLDSLE--KDA 175 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 + G + R S +GG TSL KK K K Sbjct: 176 PLAVGSVLGRSGSEASGGATSLNAIKPKKTAKAK 209 >gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1] Length = 262 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 4/218 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R E+ +F F+ E+ V + +++PP +A IP+L AQ Q G W+ + Sbjct: 48 LFVHRDTEKNNSSIAFEFTPENMKKVEAITAQFPPGHRAAACIPVLDLAQRQYGGWLPIS 107 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA +L M IRV E+A+FYT F PVG + HVQVC TTPCM+RG + E + K Sbjct: 108 AMDEVARVLQMPKIRVYEVASFYTMFNRDPVG-KYHVQVCTTTPCMVRGAYNIFEHLQKK 166 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + DG + EVEC GAC NAPM+ I + YEDL ++ II+A +G+T Sbjct: 167 LGLHNGETSEDGMFTLLEVECLGACSNAPMIQINDEYYEDLELADVDRIIEALR--KGET 224 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PGPQ R ++ P GGLT+L K + D K+ Sbjct: 225 PKPGPQNGRKAAEPLGGLTALTSEPVDGAHKFRTDGKL 262 >gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington] gi|81390153|sp|Q68X20|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str. Wilmington] Length = 170 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 +F+F +++ +I +YPP+ +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+ Sbjct: 9 TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYM 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R E+ATFY+ F LSPVG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 69 RAYEVATFYSMFNLSPVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQKF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDL ++E++I+ + Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166 >gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus] Length = 192 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 3/177 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT + Sbjct: 6 IEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMY 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GACV Sbjct: 66 NRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACV 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 NAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL + Sbjct: 125 NAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE 179 >gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E] gi|6647681|sp|Q9ZDH5|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii] gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii Rp22] Length = 177 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 +F+F +++ +I +YPP +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+ Sbjct: 9 TFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYM 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R E+ATFYT F L+P+G + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 69 RAYEVATFYTMFNLNPIG-KYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQKF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDL ++E++I+ + Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166 >gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus] Length = 238 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 109/179 (60%), Gaps = 3/179 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT Sbjct: 50 VRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 109 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GA Sbjct: 110 MYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGA 168 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 CVNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL + Sbjct: 169 CVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE 225 >gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic] gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic] Length = 167 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT E++ +IID F Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGKIIDKF 164 >gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens] Length = 220 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 114/202 (56%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 9 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 68 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + IRV E+ATFYT + PVG + H+Q C TTPCML + ++E + K+ Sbjct: 69 MNKVAEVLQVPPIRVYEVATFYTMYNRKPVG-KYHIQACTTTPCMLPNSDSILEAIQKKL 127 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 128 GIKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 185 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R S PAGG T L + Sbjct: 186 KPGPRSGRFSCEPAGGPTPLTE 207 >gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina 98AG31] Length = 257 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F F+ E I +PP ++AVIP+L AQ Q +GW S + + VA +LDM +R Sbjct: 57 FEFTPEYMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSISVMNYVAKLLDMTPMR 116 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK--LIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT F PVG VQVC TTPCML GC +++ ++ + + +D Sbjct: 117 VYEVATFYTMFNREPVGEH-FVQVCTTTPCMLGGCGSSIIVDTIKDHLGIQLGQTTADKK 175 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPMV I D YEDLTP+ +++I+D G+ + PGPQ R SS Sbjct: 176 FTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGRKPS--PGPQSSRKSSE 233 Query: 193 PAGGLTSL 200 P GGLTSL Sbjct: 234 PVGGLTSL 241 >gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis CGDNIH1] gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis CGDNIH1] Length = 227 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRA 59 + E +QP+ FSF +S + ++++YPP+R SAV+PLL AQ Q G W+ RA Sbjct: 10 VGREPWQPAEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRA 69 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A L MA IRV E+ATFY + PVG R H+Q+C TTPC LRG ++++ CR+ Sbjct: 70 AMDEIARRLGMAPIRVYEVATFYFMYNTRPVG-RHHLQLCTTTPCWLRGSDEVVAACRSA 128 Query: 120 IHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + S DG + EVEC GACVNAP++ + D YED+ R +++A G+ Sbjct: 129 TGIQGWGETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGERP 188 Query: 179 TIRPGPQIDRISSAPAGGLTSLLD 202 T PG R +SAP GG T+L D Sbjct: 189 T--PGSMSGRQNSAPEGGPTTLRD 210 >gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis] gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis] Length = 242 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFSAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + ++EI++ + D I Sbjct: 150 GIGVGETTKDKKFTISEVECLGACVNAPMVSINDDYYEDLTGKDMQEILNDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSLLDN 203 PGP+ R +S P G TSL+++ Sbjct: 207 SPPGPRNGRFASEPKGEPTSLIED 230 >gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246] gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246] Length = 167 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ + D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT E++ EIID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKL 164 >gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500] Length = 342 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 126/212 (59%), Gaps = 7/212 (3%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVAN 66 EE + F F+EE+ + V +++S+YPP+ QSA+IPLL AQ Q G W+S A++ VA Sbjct: 41 EENNDHTPFDFNEENMVKVEKILSKYPPAYRQSAMIPLLDLAQRQNGGWISLRAMDKVAE 100 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 I+ + + E+A+FYT F + +G + VQVC TTPCMLRG +++ C++ + Sbjct: 101 IIGVPPMEAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTAILDACKHHLKIGVGE 159 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 D + EVEC GACVNAPM+ I D YEDLTP+ ++ +++ G+ I GPQ Sbjct: 160 TTKDDVFTLAEVECLGACVNAPMICINDDFYEDLTPDSMKNLLNQIQNGKETKI--GPQT 217 Query: 187 DRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 R ++ G T+LL+ S G +DD +S Sbjct: 218 HRKAAEGPQGKTTLLEQPS---GPFCRDDLMS 246 >gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2] gi|75536607|sp|Q4UM09|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2] Length = 167 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 3 TNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFY+ F L VG + H+QVC TTPC L G + ++++C K+ K D Sbjct: 63 MRAYEVATFYSMFNLKRVG-KYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQK 121 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E+EC GACVNAP+V I D YEDLT E++E++ID +S Sbjct: 122 FTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYSN 163 >gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi] gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi] Length = 242 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS E+ V+ ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVADILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILEQCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I+ S + D I Sbjct: 150 AIGVGETTKDNKFTISEVECLGACVNAPMVSINDDYYEDLTAKDMQDIL---SDLKADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S P G TSL Sbjct: 207 SPPGPRNGRFASEPKGNPTSL 227 >gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae] gi|187030243|emb|CAP30450.1| hypothetical protein CBG_11518 [Caenorhabditis briggsae AF16] Length = 239 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + + + YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTPENEDRIKAICAIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+ Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVHEILDDLKAGRKPAA 205 Query: 181 RPGPQIDRISSAPAGGLTSL 200 GP+ R+++ P G LTSL Sbjct: 206 --GPRSGRLAAEPFGELTSL 223 >gi|254568298|ref|XP_002491259.1| hypothetical protein [Pichia pastoris GS115] gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Pichia pastoris GS115] gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Pichia pastoris CBS 7435] Length = 241 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R ++ F F++E+ E+I++YPP + AV+PLL Q Q G+ S + Sbjct: 30 ISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA LDM +RV E+ATFYT + P+G + +VQVC TTPC L G + +++ + Sbjct: 90 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNVQVCTTTPCQLCGSDGIMKAITEHL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P D + +EVEC GACVNAPM+ + D YEDLTPER EI+ F + GD Sbjct: 149 QIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQS--GDIP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP DR S P G L + +DD Sbjct: 207 KPGPA-DRHSCEPHSGPKVLTNETPYHVKDFIRDD 240 >gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7] gi|20139044|sp|Q92ID9|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7] Length = 167 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT +++ +IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKL 164 >gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae] gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae] Length = 246 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 116/202 (57%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F++E+ V +I+ YP +AVIP+L AQ Q GW+ +A Sbjct: 33 LFVHRDSPENNPDTPFEFTQENLNRVKLIINNYPVGHEAAAVIPVLDLAQRQHGWLPLSA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL M +RV E+ATFYT F PVG + HVQ+C TTPC L G + ++E + Sbjct: 93 MNKVAEILKMPRMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCNLGGVGSDVILEAIKK 151 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K+ D + EVEC GACVNAPMV I + YEDLT +EEI+D G+ Sbjct: 152 KLGINVGETTKDNMFTLIEVECLGACVNAPMVQINDNYYEDLTAADMEEILDDLMAGK-- 209 Query: 179 TIRPGPQIDRISSAPAGGLTSL 200 T + GP+ R +S P GLTSL Sbjct: 210 TPKAGPRNGRFASEPLSGLTSL 231 >gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor [Pichia angusta DL-1] Length = 234 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + Q F F+ E+ E++ RYPP +SAV+PLL Q Q G+ S A Sbjct: 24 VAVHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAV 83 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+A+FYT + PVG + H+Q+C TTPC L + +IE + Sbjct: 84 MNHVAELLDMPAMRVYEVASFYTMYHREPVG-KYHIQICTTTPCQLCNSDSVIEAIMKHL 142 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + +P DG S EEVEC GACVNAPM+ I D YEDLT E EI++A +G+ Sbjct: 143 NLQPNQTTPDGLFSLEEVECLGACVNAPMMQINDDYYEDLTAESAVEILEALKSGK 198 >gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa] gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str. Iowa] Length = 167 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC L G + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT E++ EIID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKL 164 >gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium marneffei ATCC 18224] gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium marneffei ATCC 18224] Length = 260 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 7/208 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FKFSAENEKVIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQVC TTPC L GC +K+++ + P H DG Sbjct: 114 YEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINKHLGITPGHTTEDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI----RPGPQIDRI 189 ++ EVEC GACVNAPMV I D YEDLTPE + +++ A + PGP R Sbjct: 173 TYIEVECLGACVNAPMVQINDDYYEDLTPESITQLLTALKESATNPAVKVPAPGPLSGRD 232 Query: 190 SSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + + GLT+L + +KD ++ Sbjct: 233 TCENSAGLTNLKEVTWNPEQMMRKDGEL 260 >gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces stipitis CBS 6054] gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces stipitis CBS 6054] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R ++ + Q +F F+ E+ +E+I++YPP + AV+PLL Q Q G+ S + Sbjct: 27 ISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ ++ + Sbjct: 87 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDGVMKAIQDHL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ + D YEDLTPE +I+ F G+ I Sbjct: 146 KVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPEATVDILKQFQAGKEPKI 205 Query: 181 RPGPQIDRISSAPAGGLTSLL 201 GP R S P G LL Sbjct: 206 --GPISGRESCEPHSGAKVLL 224 >gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5] gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5] Length = 167 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + +++VC K+ + D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDLT E++ IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGGIIDKL 164 >gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica] gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica] gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica] Length = 243 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 4/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R E F FS E+ EVI++YPP ++AV+PLL Q Q G+ S + Sbjct: 30 VSVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISV 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + +P+G R H+Q+C TTPC L G + ++E +N + Sbjct: 90 MNYVAKLLEMPPMRVYEVATFYTMYNRTPMG-RYHLQICTTTPCQLCGSDGIMEAVQNTL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + KP D + EVEC GACVNAPM+ I D YEDLTPE ++++ G+ T Sbjct: 149 NIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPT- 207 Query: 181 RPGPQID-RISSAPAGGLTSLL 201 PGP+ R PA G LL Sbjct: 208 -PGPENHVRRDCEPASGQKVLL 228 >gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus Af293] gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus fumigatus Af293] gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus fumigatus A1163] Length = 268 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 11/195 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 54 FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQ+C TTPC L GC K++E + + H DG Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITAGHTTEDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185 ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A + G ++ PGP Sbjct: 173 TFIEVECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESATAAESGKEVKVPAPGPL 232 Query: 186 IDRISSAPAGGLTSL 200 R S + GLT+L Sbjct: 233 SGRHSCENSAGLTNL 247 >gi|324507243|gb|ADY43075.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Ascaris suum] Length = 280 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 3/175 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ YP +A+IP L AQ Q GW+ +A+ VA IL++ +RV E+ATFYT F Sbjct: 94 IKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVATFYTMF 153 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + +QVC TTPCMLRG E L E K+ K DG + EVEC GAC Sbjct: 154 NRQPVG-KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLFTLMEVECLGACA 212 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 NAPM+ + D YEDLTP + +I+ G+ +PGP+ R+++ P GG TSL Sbjct: 213 NAPMIQVNDDFYEDLTPSDMNDILSELKAGKRP--KPGPRSGRLAAEPHGGFTSL 265 >gi|289619209|emb|CBI54477.1| unnamed protein product [Sordaria macrospora] Length = 271 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 112/190 (58%), Gaps = 6/190 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS E+ + E+I RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 69 FKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRV 128 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + HVQ C TTPC L GC + +++ + + K DG Sbjct: 129 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLF 187 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGDTIRPGPQIDRIS 190 ++ EVEC GAC NAPMV I D +EDLTPE + +++ A T +PGPQ R + Sbjct: 188 TFLEVECLGACANAPMVQINDDYFEDLTPETITQVLVALKESVTDASKAPKPGPQSGRQT 247 Query: 191 SAPAGGLTSL 200 A GLTSL Sbjct: 248 CENAAGLTSL 257 >gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Acromyrmex echinatior] Length = 243 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E++ F F+E + ++ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEQDNPNIPFEFNEANKKRIDALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ILD+ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++ Sbjct: 91 MHKVAEILDVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDSIVNAVTKAT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + ++D + EVEC GAC NAPM + D YEDLTPE II+AF +G+ Sbjct: 150 NCELGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATTIINAFK--KGERP 207 Query: 181 RPGPQ-IDRISSAPAGGLTSL 200 PGPQ R ++ PAGGLTSL Sbjct: 208 PPGPQNCSRFAADPAGGLTSL 228 >gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus clavatus NRRL 1] gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus clavatus NRRL 1] Length = 268 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 11/197 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQ+C TTPC L GC K++E + H DG Sbjct: 114 YEVATFYTMYNRDPVG-KYFVQLCTTTPCQLGGCGSTKILEAIEEHLGITSGHTTEDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185 + EVEC GACVNAPMV I D YEDLTPE ++ ++ A + G +++ PGP Sbjct: 173 TLLEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATAAESGKSVKVPAPGPL 232 Query: 186 IDRISSAPAGGLTSLLD 202 R + + GLT+L D Sbjct: 233 SGRQTCENSAGLTNLQD 249 >gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa OR74A] gi|730212|sp|P40915|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial; Flags: Precursor gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa] gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24) [Neurospora crassa] gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa OR74A] gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD Length = 263 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 113/190 (59%), Gaps = 6/190 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS ++ + E+I RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 61 FKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRV 120 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + HVQ C TTPC L GC + +++ + + K DG Sbjct: 121 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLF 179 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRIS 190 ++ EVEC GAC NAPMV I D +EDLTPE +++++ A D + PGPQ R + Sbjct: 180 TFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGPQSGRQT 239 Query: 191 SAPAGGLTSL 200 A GLTSL Sbjct: 240 CENAAGLTSL 249 >gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii] Length = 178 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 3/171 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F+ E+ V ++I YP +AVIP+L AQ Q GW+ +A+ VA IL+M+ I Sbjct: 11 TPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHEVAGILEMSKI 70 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFYT F PVG + H+Q+C TTPCMLR + +++V +NK+ D Sbjct: 71 RVYEVATFYTMFNREPVG-KYHIQICTTTPCMLRDSDGILDVIKNKLGIGVGETTKDNMF 129 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 + EVEC GACVNAPMV I + YEDLT + +EEIID + T + GP Sbjct: 130 TLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR--TPKAGP 178 >gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba] gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba] Length = 242 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + D I Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S P G TSL Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227 >gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta] gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta] Length = 242 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + D I Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S P G TSL Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227 >gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya fischeri NRRL 181] gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya fischeri NRRL 181] Length = 268 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 11/195 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 54 FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + PVG + VQ+C TTPC L GC K++E + + H DG Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITAGHTTEDGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185 ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A + G ++ PGP Sbjct: 173 TFIEVECLGACVNAPMVQINDDYYEDLTPESIKTLLTALKESATAAESGKEVKVPAPGPL 232 Query: 186 IDRISSAPAGGLTSL 200 R + + GLT+L Sbjct: 233 SGRHTCENSAGLTNL 247 >gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia pulex] Length = 243 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F+F++E+ N +I+ YP ++AVIPLL AQ Q G W+ +A+ VA++L M +R Sbjct: 46 FAFTKENVERANAIINIYPDGHKRAAVIPLLDLAQRQAGGWLPISAMHAVADMLSMPKMR 105 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F +P+G + VQVC TTPC L G EK++ + K++ +G S Sbjct: 106 VYEVATFYTMFNRNPIG-KHFVQVCTTTPCWLNGSEKIMNCLKKKLNLNNGETTPNGEFS 164 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 EVEC GACVNAPM+ I + +EDLT + EEIID G+ + GP+ R ++ P Sbjct: 165 LLEVECLGACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGR--EPKAGPRNGRFAAEPR 222 Query: 195 GGLTSL 200 GLTSL Sbjct: 223 DGLTSL 228 >gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogaster] Length = 269 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 58 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 117 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 118 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 176 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + D I Sbjct: 177 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDL---KADKI 233 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S P G TSL Sbjct: 234 SPPGPRNGRFASEPKGEPTSL 254 >gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster] gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia] gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans] gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster] gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia] gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans] gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct] gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct] Length = 242 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + D I Sbjct: 150 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSL 200 PGP+ R +S P G TSL Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227 >gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 252 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 114/188 (60%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+EE V+ VISRYP ++AVIP+L Q Q GW S A + VA +L+M +RV Sbjct: 52 FEFNEEYRKKVDTVISRYPKQYRKAAVIPVLDLGQRQNGWTSLAVMNHVAEVLEMPRMRV 111 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQ-KPLHRNSDGT 132 E+ATFYT + PVG + + CGTTPC+L G +++ + + + K DG Sbjct: 112 YEVATFYTMYNREPVG-KHLISYCGTTPCLLGGVGGKRIWDTMTSHLGGIKNGETTKDGK 170 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPM+ I D YEDLTPE +I+DA + +G+T +PGPQ R +S Sbjct: 171 FTLVEVECLGACSNAPMIQINDDFYEDLTPESTIKILDALA--RGETPKPGPQSSRKTSE 228 Query: 193 PAGGLTSL 200 A G+T+L Sbjct: 229 NAQGMTTL 236 >gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5] gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5] gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] Length = 203 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 112/200 (56%), Gaps = 17/200 (8%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ------EGWVSRAAIEVVANIL 68 +FSF E S + +I++YP R SAV+PLL AQ Q WV R A++V+A L Sbjct: 8 AFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMDVIAARL 67 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 M +RV E+ATFYT F PVG + H+QVC TTPC LRG ++++ CR Sbjct: 68 SMPPMRVYEVATFYTMFHTKPVG-KFHLQVCTTTPCWLRGSDEVMSACRKAAE------- 119 Query: 129 SDG-TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 +DG T S EEVEC G CVNAP+V + D YEDL R E +++ GD G I Sbjct: 120 ADGETFSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRA--GDVPPAGSTIG 177 Query: 188 RISSAPAGGLTSLLDNNSKK 207 R +SAP GG T+L K Sbjct: 178 RQASAPEGGPTTLFGVGGTK 197 >gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966] gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966] Length = 271 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 27/202 (13%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 FSF E ++IS+YPP ++AVIPLL AQ+Q + WVS +A+ VA++L+M +R Sbjct: 55 FSFVGEYEQEAKDIISKYPPQYKKAAVIPLLHLAQKQNDNWVSISAMNHVADVLEMPPMR 114 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT F SPVG + VQVC TTPCML GC ++E N + K H D Sbjct: 115 VYEVATFYTMFNRSPVG-KFFVQVCTTTPCMLGGCGSTAVLEAIENHLGIKAGHTTPDKM 173 Query: 133 LSWEEVECQGACVNAPMVMIGKDTY---------------------EDLTPERLEEIIDA 171 + EVEC GAC NAPM+ I + Y EDLTPE + +++D Sbjct: 174 FTVIEVECLGACSNAPMIQINDEYYVRIFYNTHTHTHTSGSSNAEQEDLTPESVVKVLDG 233 Query: 172 FSTGQGDTIRPGPQIDRISSAP 193 + +G+ ++PGPQ R++SAP Sbjct: 234 LA--RGEHVKPGPQNGRLTSAP 253 >gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 262 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/193 (39%), Positives = 114/193 (59%), Gaps = 9/193 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F++++ + EV+ RYPP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 57 FKFTKQNEAIITEVLKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRV 116 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + HVQ C TTPC L GC + +++ + + K +DG Sbjct: 117 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGIKQGETTADGLF 175 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD------TIRPGPQID 187 ++ EVEC GACVNAPM+ I D YEDLTPE ++ ++ A D +PGP Sbjct: 176 TFIEVECLGACVNAPMIQINDDYYEDLTPETIKSLLTALKESVTDVGKAAKVPKPGPLSG 235 Query: 188 RISSAPAGGLTSL 200 R + + GLT+L Sbjct: 236 RDTCENSAGLTNL 248 >gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae] gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTPENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV + D YEDLT + ++ I+ + Sbjct: 150 SIGVGETTKDKKFTISEVECLGACVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSP- 208 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 PGP+ R +S P G TSL++ Sbjct: 209 -PGPRNGRFASEPKGEPTSLIE 229 >gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f. nagariensis] gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f. nagariensis] Length = 281 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 117/208 (56%), Gaps = 15/208 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +V + E +F F+E + VNE+I+RYPP+ SA+IP+L AQ+Q G W+S A Sbjct: 49 FNVHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLSLA 108 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +LDMA IRV E+ATFYT F + +G + HV +CGTTPC L+G + + E Sbjct: 109 ALNRVAKVLDMAPIRVYEVATFYTMFNRTKIG-KYHVLICGTTPCRLQGAQGIEEAVTKH 167 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEII 169 + DG + E+EC GACVNAPMV I T YEDLTP + I+ Sbjct: 168 LGIHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDLTPSDIVGIL 227 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGL 197 D +G +PG Q R + PAG + Sbjct: 228 DTIK--KGGKPKPGSQ-HRSKAEPAGAV 252 >gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis] gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis] Length = 264 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV + D YEDLT + +++I+ + D I Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSLLD 202 PGP+ R +S P G TSL + Sbjct: 207 SPPGPRNGRFASEPKGKPTSLTE 229 >gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura] gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura] Length = 264 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV + D YEDLT + +++I+ + D I Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDL---KADKI 206 Query: 181 R-PGPQIDRISSAPAGGLTSLLD 202 PGP+ R +S P G TSL + Sbjct: 207 SPPGPRNGRFASEPKGKPTSLTE 229 >gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus clemensi] Length = 238 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 8/201 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ +A+ Sbjct: 28 VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA+++ M +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ + Sbjct: 88 NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILQACKDNLG 146 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 D + EVEC GACVNAPMV I D YEDLT + + EI+D G+ + Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK----K 202 Query: 182 P--GPQIDRISSAPAGGLTSL 200 P GP+ R ++ P GG TSL Sbjct: 203 PARGPRSSRYAAEPFGGPTSL 223 >gi|331251140|ref|XP_003338171.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317161|gb|EFP93752.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 277 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 108/188 (57%), Gaps = 6/188 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74 F F+ E I +PP ++AVIP+L AQ Q GW S + + VA +L+M +R Sbjct: 77 FEFTPEYMEKAQRCIDNFPPQYKKAAVIPVLDLAQRQNNGWTSISVMNYVAKLLEMPPMR 136 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK--LIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT F PVG VQ+C TTPCML GC ++E +N + + D Sbjct: 137 VYEVATFYTMFNREPVGEH-FVQICTTTPCMLGGCGSGVIVEAIKNHLGVELGQTTKDKK 195 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPMV I D YEDLTPE + +++D + G+ +PGPQ R SS Sbjct: 196 FTVIEVECLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGRKP--KPGPQSSRQSSE 253 Query: 193 PAGGLTSL 200 P G LTSL Sbjct: 254 PVGKLTSL 261 >gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum] Length = 249 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 4/188 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+EE+ V+ +IS+YPP QSA+IPLL AQ Q G W+S A++ VA I+ +A + Sbjct: 54 FDFTEENMKKVDTIISKYPPKYRQSAMIPLLDLAQRQNGGWISLKAMDKVAEIIGVAPMV 113 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 E+A+FYT F + +G + VQVC TTPCMLRG ++ C++ ++ D + Sbjct: 114 AYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTDILNACKHHLNINVGETTKDEKFT 172 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 EVEC GACVNAPM+ I D YEDLTPE ++ ++ + + + GPQ R ++ Sbjct: 173 LVEVECLGACVNAPMICINDDYYEDLTPETMKNLLTQIE--KSEPTKVGPQNHRKAAEGP 230 Query: 195 GGLTSLLD 202 G T+LL+ Sbjct: 231 QGKTTLLE 238 >gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes aegypti] Length = 180 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 3/159 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IPLL AQ Q GW+ +A+ VA+IL + +RV E+ATFYT F P GT HVQVC T Sbjct: 1 MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTT 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 TPC LRG ++++ C+ K+ DG + EVEC GACVNAPM+ + D YEDLT Sbjct: 60 TPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLT 119 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 + EI+ QG RPGP+ R +S P GGLTSL Sbjct: 120 AKDTIEILSDLK--QGKVPRPGPRNGRFASEPTGGLTSL 156 >gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong] gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong] Length = 192 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 FSFS E+ + ++I+ YP + SAV+ +L AQ Q W+S + IE VAN+L M YI+ Sbjct: 9 FSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYIK 68 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V EIA+FYT F L PVG + H+Q+CGTTPC LRG + ++ C+ + + + D + Sbjct: 69 VYEIASFYTMFNLQPVG-KYHIQICGTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLFT 127 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 E EC GAC NAP+V I D YE+LT ++++EII+ Sbjct: 128 VSETECLGACRNAPVVQINHDYYENLTNDKIKEIIN 163 >gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980] gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980 UF-70] Length = 292 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 3/180 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ V E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LNVHRDTPENNASIPFKFTPQNEKLVEEILKRYPPQYKKAAVMPILDLGQRQHGFTSLSV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+ATFYT + +PVG + H+QVC TTPC L GC + +++ Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNRNPVG-KYHLQVCTTTPCQLGGCGSDAIVKTIEQ 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + KP H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ A D Sbjct: 158 HLGIKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQASASD 217 >gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae] Length = 243 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS ++ V +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 32 LFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPLLDLAQRQYGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++ + + Sbjct: 92 MHHVADILKLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSNEILDTIKKNL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + +SD + EVEC GACVNAPMV I D YEDLT + EEI+ G+ Sbjct: 151 GLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYEDLTVQDTEEILADLKAGRKP-- 208 Query: 181 RPGPQIDRISSAPAGGLTSL 200 +PGP+ R ++ P G TSL Sbjct: 209 KPGPRSGRYAAEPIGEPTSL 228 >gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis ER-3] gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis ATCC 18188] Length = 259 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 7/208 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +V R E F FSEE+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 FAVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAVMPLLDLGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + HV+VC TTPC L GC +K+++ + Sbjct: 99 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYHVKVCTTTPCQLGGCGSDKIMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAP+V I D YEDLTPE + ++DAF + + Sbjct: 158 HLGVSNGQTTPDKLYTVLEVECLGACVNAPVVQINDDYYEDLTPESVVSLLDAFKESETN 217 Query: 179 -TIR---PGPQIDRISSAPAGGLTSLLD 202 +++ PGP +R + + GLT+L + Sbjct: 218 KSVKIPPPGPLSERNTCENSAGLTNLTN 245 >gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum] gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium castaneum] Length = 243 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 3/185 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ E+ + +++ YP ++A+IPLL AQ Q GW+ +A+ VA IL++ +RV Sbjct: 47 FDFTPENKKRADAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILNLPRMRV 106 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT F P G + H+QVC TTPC LRG +++++ + + + +SDG + Sbjct: 107 YEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTIKCNLKLEVGETSSDGMFTL 165 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 EVEC GACVNAPM+ + D YEDLT + EEI++ + +PGP+ R ++ P G Sbjct: 166 SEVECLGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNKKP--KPGPRNGRFAAEPIG 223 Query: 196 GLTSL 200 T L Sbjct: 224 EPTCL 228 >gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis Pb03] gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 259 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L GC K+++ + Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + SD + EVEC GACVNAPMV I D YEDLTPE + ++ A + D Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217 Query: 179 TI----RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 T PGP R S + GLT+ L N S + +KD ++ Sbjct: 218 TTVKVPAPGPLSGRKSCENSAGLTN-LTNPSWSPDRMRKDGEL 259 >gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Apis mellifera] Length = 243 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+E + + ++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEVDNPSIPFEFNEANKKRIEALLKIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++E Sbjct: 91 MHKVAEILNIPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKVT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + K ++D + EVEC GAC NAPM + D YEDLTPE II+AF +G+ Sbjct: 150 NCKVGEMSADKLFTVSEVECLGACANAPMFQVNDDYYEDLTPESAISIINAFK--KGERP 207 Query: 181 RPGPQID-RISSAPAGGLTSL 200 PGPQ R ++ PAGGLTSL Sbjct: 208 PPGPQNSPRFAADPAGGLTSL 228 >gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus salmonis] Length = 240 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 8/201 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ +A+ Sbjct: 30 VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ + Sbjct: 90 NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 D + EVEC GACVNAPMV I D YEDLT + ++EI++ G + Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKVGT----K 204 Query: 182 P--GPQIDRISSAPAGGLTSL 200 P GP+ R ++ P GG TSL Sbjct: 205 PARGPRSSRYAAEPFGGPTSL 225 >gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+] gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+] Length = 260 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 6/190 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F++++ + E++ RYPP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 58 FKFTDQNEKIITEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRV 117 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + HVQ C TTPC L GC + +++ + + K DG Sbjct: 118 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGIKQGETTPDGLF 176 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRIS 190 ++ EVEC GACVNAPMV I + YEDLTPE ++++ A D +PGP R + Sbjct: 177 TFIEVECLGACVNAPMVQINDEYYEDLTPETTKQLLTALKESLNDASKAPKPGPVSGRDT 236 Query: 191 SAPAGGLTSL 200 + GLT+L Sbjct: 237 CENSAGLTNL 246 >gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Harpegnathos saltator] Length = 216 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 111/188 (59%), Gaps = 8/188 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+E + + +++ YP + A+IPLL AQ Q GW+ +A+ VA ILD+ +RV Sbjct: 19 FEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILDLPRMRV 78 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT F P+G + HVQ+C TPC LR + ++E + + ++D + Sbjct: 79 YEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKATNCEIGATSADKLFTI 137 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP--GPQID-RISSA 192 EVEC GAC NAPM + D YEDLTPE II+AF G+ RP GPQ R ++ Sbjct: 138 SEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFKKGE----RPPAGPQNSTRFAAD 193 Query: 193 PAGGLTSL 200 PAGGLTSL Sbjct: 194 PAGGLTSL 201 >gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767] gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii] Length = 238 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 5/202 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +S+ R +E+ + SF F+ E+ NE+I++YPP ++AV+PLL Q Q G+ S A Sbjct: 26 ISIHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAV 85 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + + Sbjct: 86 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDEVMDAITSHL 144 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ-GDT 179 KP D + +EVEC GACVNAPM+ + D +EDLT E+ ID T Q G Sbjct: 145 KIKPGQTTPDKLFTLQEVECLGACVNAPMLALNDDFHEDLTAEK---TIDLLKTLQAGKE 201 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 + GP R + P G LL Sbjct: 202 PKAGPVSGRDTCEPFSGAKVLL 223 >gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus clemensi] Length = 238 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 8/201 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ +A+ Sbjct: 28 VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA+++ M +RV E+ATFYT F +PVG + HVQVC T PC LRG +++++ C++ + Sbjct: 88 NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTAPCWLRGSDEILQACKDNLG 146 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 D + EVEC GACVNAPMV I D YEDLT + + EI+D G+ + Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK----K 202 Query: 182 P--GPQIDRISSAPAGGLTSL 200 P GP+ R ++ P GG TSL Sbjct: 203 PARGPRSSRYAAEPFGGPTSL 223 >gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Camponotus floridanus] Length = 323 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 4/199 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 + R +E + F F E + + +++ YP + A+IPLL AQ Q GW+ +A+ Sbjct: 113 MHRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 172 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + +++ + Sbjct: 173 KVAEILEVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDAIVKAVTAATNC 231 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + ++D + EVEC GAC NAPM + D YEDLTPE +I+AF +G+ P Sbjct: 232 EIGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVINAFK--KGERPPP 289 Query: 183 GPQ-IDRISSAPAGGLTSL 200 GPQ R ++ PAGGLTSL Sbjct: 290 GPQNAPRFAADPAGGLTSL 308 >gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 259 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L GC K+++ + Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + SD + EVEC GACVNAPMV I D YEDLTPE + ++ A + D Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217 Query: 179 -TIR---PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 T++ PGP R S + GLT+ L N S + +KD ++ Sbjct: 218 VTVKVPAPGPLSGRKSCENSAGLTN-LTNPSWSPDRMRKDGEL 259 >gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta] Length = 243 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+E + + +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEHDNPNIPFEFNEANKKRIEALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P+G + H+Q+C TPC LR + ++ Sbjct: 91 MHKVAEILGVPNMRVYEVATFYTMFNRKPMG-KYHIQICTCTPCWLRDSDSIVNAVTKAT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + ++D + EVEC GAC NAPM + D YEDLTPE II+A +G+ Sbjct: 150 NCELGGTSADKMFTVSEVECLGACANAPMFQVNDDYYEDLTPETTTAIINALK--KGERP 207 Query: 181 RPGPQ-IDRISSAPAGGLTSL 200 PGPQ + R ++ PAGGLTSL Sbjct: 208 PPGPQNVSRFAADPAGGLTSL 228 >gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit precursor [Glossina morsitans morsitans] Length = 242 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V+ ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPDVPFEFTAENQKRVDAILSIYPEGHKRGALIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++ C+ + Sbjct: 91 MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILATCKKTL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPM+ I D YEDLT + +EEI+ + Sbjct: 150 GIGVGETTKDMKFTISEVECLGACVNAPMIAINDDYYEDLTSKDMEEILADCKAER--VP 207 Query: 181 RPGPQIDRISSAPAGGLTSL 200 R GP+ R +S P G TSL Sbjct: 208 RAGPRNGRFASEPKGNPTSL 227 >gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720] gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720] Length = 237 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ Q F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 24 ISVHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISV 83 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + + Sbjct: 84 MNYVAKMLDMPPMRVYEVATFYTMYMRHPMG-KYNIQVCTTTPCQLCGSDEIMKAVTDFL 142 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ +G D +EDLTPE+ E++ G+ Sbjct: 143 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVGDDYHEDLTPEKTVELLQKLKDGK-PVE 201 Query: 181 RPGPQIDRISSAPAGG 196 + GP R S P G Sbjct: 202 KAGPVSGRHSCEPLSG 217 >gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Lepeophtheirus salmonis] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 8/201 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ +A+ Sbjct: 30 VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ + Sbjct: 90 NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 D + EVEC GACVNAPMV I D YEDLT + ++EI++ DT + Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKV---DT-K 204 Query: 182 P--GPQIDRISSAPAGGLTSL 200 P GP+ R ++ P GG TSL Sbjct: 205 PARGPRSSRYAAEPFGGPTSL 225 >gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 259 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 7/208 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L GC K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + D Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKGAETD 217 Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202 PGP R S + GLT+L + Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245 >gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC 49957] gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC 49957] Length = 218 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 10/198 (5%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65 +P+SF+F ES + +++ RYP + S VIPLL AQ+Q G WV R A++ +A Sbjct: 11 EPASFAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSAWVPRVAMDTIA 70 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L MA IRV E+ATFY F P+G R H+QVCGTTPC LRG ++++ C+ H K Sbjct: 71 ERLGMAPIRVYEVATFYFMFNTRPIG-RFHLQVCGTTPCWLRGSDEVLRACKEHGHLKGY 129 Query: 126 HRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 S DG + EVEC G CVNAP++ + D YED+ E ++++A +G+ +PG Sbjct: 130 GDTSEDGLFTMTEVECLGGCVNAPILQVDDDYYEDMDYETTVQLLEALK--RGERPKPGS 187 Query: 185 QIDRISSAPAGGLTSLLD 202 R SAP GG ++LD Sbjct: 188 MKGRQGSAPIGGPETVLD 205 >gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum] gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum] Length = 244 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65 E+ + F F++E+ +++++YP QSA+IPLL AQ Q G W+S A++ VA Sbjct: 40 TEDNNDHTPFDFNQENLKKAEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLKAMDKVA 99 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +I + + E+A+FYT F + VG + VQVC TTPCMLRG E++++ CR+ + + Sbjct: 100 HICGIPPMTAYEVASFYTMFNRTKVG-QNFVQVCTTTPCMLRGSEEIVKACRSNLGIEVG 158 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 +D + EVEC GACVNAPM+ + D YEDLTPE ++++ +T + GPQ Sbjct: 159 ETTADNKFTLVEVECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIK--NNETTKIGPQ 216 Query: 186 IDRISSAPAGGLTSLLD 202 R ++ G T+LL+ Sbjct: 217 THRKAAEGPHGKTTLLE 233 >gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis] gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis] Length = 255 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 19/199 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FSE++ V E+IS YP + QSAVIPLL AQ+Q G W+ +A++ VA ++++A IR Sbjct: 47 WEFSEKNKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVIEVAPIR 106 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + + K DG S Sbjct: 107 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 165 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + YED+TP+R+ EI+D G+ T Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVDMLRRGEKPPHGTQN 225 Query: 182 PGPQIDRISSAPAGGLTSL 200 P RI S P GG T+L Sbjct: 226 P----KRIKSGPEGGNTTL 240 >gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides posadasii str. Silveira] Length = 264 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 12/211 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L GC +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173 + + + D + EVEC GACVNAPMV I D YEDLTPE ++++A Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217 Query: 174 ---TGQGDTI-RPGPQIDRISSAPAGGLTSL 200 +G+ I PGP R S + GLTSL Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSL 248 >gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei] gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei] Length = 254 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 112/215 (52%), Gaps = 18/215 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP---------------ERL 165 DG + EVEC GACVNAPM+ I D +EDLTP + + Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKVFFLFELCFFISIIQDV 205 Query: 166 EEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 EI+D G+ GP+ R+++ P G LTSL Sbjct: 206 HEILDDLKAGRKPA--AGPRSGRLAAEPFGELTSL 238 >gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori] gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 4/203 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R E+ F FS+ + V +++ YP + A+IPLL AQ Q G W+ + Sbjct: 31 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA IL++ +RV E+ATFYT F P+G + HVQVC TTPC LRG + ++ + + Sbjct: 91 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + G S EVEC GACVNAPM+ + D YEDL+ E +EII + + Sbjct: 150 TNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEK 207 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PGP+ R +S P GGLTSL + Sbjct: 208 PKPGPRSGRFASEPLGGLTSLTE 230 >gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis] gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis] Length = 202 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 4/171 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F F+E + +++ YP ++AVIPLL AQ Q +GW+ +A+ VA+ L+M +R Sbjct: 29 FEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAMNYVADFLNMPRMR 88 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F PVG + HVQVC TTPC LR + L++ ++K+ K + DG + Sbjct: 89 VYEVATFYTMFNREPVG-KYHVQVCTTTPCQLRNADDLLDTLKSKLGIKEGETSKDGMFT 147 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 VEC GACVNAPM+ I + YEDL+ + EEIID G+ T +PGP+ Sbjct: 148 LTVVECLGACVNAPMMQINDNYYEDLSMKDAEEIIDDLIAGR--TPKPGPR 196 >gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS] Length = 264 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 12/211 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L GC +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173 + + + D + EVEC GACVNAPMV I D YEDLTPE ++++A Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217 Query: 174 ---TGQGDTI-RPGPQIDRISSAPAGGLTSL 200 +G+ I PGP R S + GLTSL Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSL 248 >gi|226500344|ref|NP_001140609.1| hypothetical protein LOC100272681 [Zea mays] gi|194700168|gb|ACF84168.1| unknown [Zea mays] Length = 324 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++ +A I+++A IR Sbjct: 116 WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 175 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 176 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 234 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 235 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 292 Query: 185 QI-DRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 293 QHPERKNCGPAGGNTTL 309 >gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens] Length = 275 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 115/198 (58%), Gaps = 15/198 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+ + V E++S YP + QSAVIP+L AQ+Q G W+S A+ +A I+D A IR Sbjct: 67 WDFTPANMEKVKELLSHYPKNYKQSAVIPMLDLAQQQNGGWLSVQAMNRIAEIVDYAPIR 126 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F PVG + H+ VCGTTPCMLRG + + +H DG S Sbjct: 127 VYEVATFYSMFNRQPVG-KYHLLVCGTTPCMLRGSRDIEDALLKHLHVARNEVTKDGLFS 185 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+++ + YEDLTPER+ E+++ QG + G Sbjct: 186 VGEMECMGCCVNAPMIVVADYSNGVEGYSYNYYEDLTPERVVELVEELK--QGKKPKWGT 243 Query: 185 Q-IDRISSAPAGGLTSLL 201 Q RI+ PAGG T+LL Sbjct: 244 QHPKRINCGPAGGTTTLL 261 >gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Nasonia vitripennis] Length = 243 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E++ F F + + ++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTEQDNPNIPFEFDAANKKRIEAILKIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL ++ +RV E+ATFYT F P+G + HVQVC TPC LR + +++ + Sbjct: 91 MHKVAEILGVSNMRVYEVATFYTMFNRRPMG-KYHVQVCTCTPCWLRDSDSIMKAVKELT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + + D S EVEC GAC NAPM+ + D YEDLTPE II+A +G+ Sbjct: 150 NCEVGGNSPDNMFSISEVECLGACANAPMLQVNDDYYEDLTPETTATIINALK--RGERP 207 Query: 181 RPGPQI-DRISSAPAGGLTSL 200 PGPQ +R ++ P GGLTSL Sbjct: 208 APGPQCKNRYAAEPNGGLTSL 228 >gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 259 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 7/208 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L GC K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + + Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217 Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202 PGP R S + GLT+L + Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245 >gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays] Length = 281 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++ +A I+++A IR Sbjct: 73 WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 132 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 133 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 191 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 192 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 249 Query: 185 QI-DRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 250 QHPERKNCGPAGGNTTL 266 >gi|224028933|gb|ACN33542.1| unknown [Zea mays] Length = 281 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV AA++ +A I+++A IR Sbjct: 73 WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 132 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 133 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 191 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 192 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 249 Query: 185 Q-IDRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 250 QHPERKNCGPAGGNTTL 266 >gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces capsulatus H143] gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 259 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 7/208 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L GC K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + + Sbjct: 158 HLGVSNGQTTLDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217 Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202 PGP R S + GLT+L + Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245 >gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum] Length = 263 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSF+ ++ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 21 FSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGFASISVMNEVARILEMPPMRV 80 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + PVG + H+QVC TTPCML + +++ + KP + DG ++ Sbjct: 81 YEVATFYTMYNRDPVG-KYHLQVCTTTPCMLCDSDSVMQAVEKFLGVKPGNTTQDGIFTF 139 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EVEC GACVN PMV I D YEDLT E + ++++A Sbjct: 140 SEVECLGACVNGPMVQINDDYYEDLTAESVTKLLEAL 176 >gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 260 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 10/195 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+E++ + E++ +YPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FKFNEKNQAVIAEILKKYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + VQ+C TTPC L GC + +++ +N + K +DG Sbjct: 114 YEVASFYTMYNRTPVG-KFFVQICTTTPCQLGGCGSDVIVKAIKNHLGIKQGETTADGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT-------IRPGPQI 186 + EVEC GACVNAPM+ I D YEDLTPE + +++ A T +PGP Sbjct: 173 TILEVECLGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATATDPSTVSVPKPGPLS 232 Query: 187 DRISSAPAGGLTSLL 201 R + + G T+LL Sbjct: 233 GRSTCENSAGQTNLL 247 >gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton tonsurans CBS 112818] gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum CBS 127.97] Length = 267 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 55 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C TTPC L GC +K+++ + + DG Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G +++ P Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKVPPP 233 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253 >gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 267 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 55 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C TTPC L GC +K+++ + + DG Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G +++ P Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKIPAP 233 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 234 GPLSGRQTCENSAGLTSLTE 253 >gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371] gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371] Length = 267 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 55 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C TTPC L GC +K+++ + + DG Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G +++ P Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKVPPP 233 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253 >gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407] Length = 272 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 9/195 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS ++ + E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 67 FQFSADNKNVIQEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 126 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + VQ C TTPC L GC + +++ + + K +DG Sbjct: 127 YEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 185 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG----QGDTIRP--GPQID 187 ++ EVEC GACVNAPM+ I YEDLTPE ++ ++ G T P GP Sbjct: 186 TFIEVECLGACVNAPMIQINDHYYEDLTPETVKSLLSGLKAAALDPSGKTPEPKVGPTTG 245 Query: 188 RISSAPAGGLTSLLD 202 R S + GLTSL D Sbjct: 246 RHSCENSAGLTSLTD 260 >gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 121/211 (57%), Gaps = 23/211 (10%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEG-WVSRAA 60 V R +E F ++EE+ + + + ++YP +A ++P+L AQ Q G W+ + Sbjct: 23 VHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLAQRQYGGWLPLSV 82 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC------EKLIE 114 ++ VA LD+ IRV E+ATFYT ++ PVG + H+Q+CGTTPCM+ GC E ++E Sbjct: 83 MDAVAATLDVPPIRVYEVATFYTMYKRVPVG-KYHIQLCGTTPCMIGGCGAKKIKEAILE 141 Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII----- 169 H L SD S+EEVEC GACVNAPMV I D YEDLT + ++ I+ Sbjct: 142 EVGIGHHNDEL--TSDKMFSYEEVECLGACVNAPMVQINDDYYEDLTEQDMKTILRDLRK 199 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 D FS R GP+ R+SS P GG TSL Sbjct: 200 DGFS-------RKGPRNGRVSSEPLGGATSL 223 >gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group] Length = 274 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+ +A I+++A IR Sbjct: 66 WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242 Query: 185 QI-DRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 243 QHPERKNCGPAGGNTTL 259 >gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group] gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica Group] gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group] gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group] Length = 274 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+ +A I+++A IR Sbjct: 66 WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242 Query: 185 QI-DRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 243 QHPERKNCGPAGGNTTL 259 >gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group] Length = 274 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + VNE++S YP + QS +IP+L AQ+Q G WV AA+ +A I+++A IR Sbjct: 66 WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E + K SDG S Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ EI++ +G+T G Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242 Query: 185 QI-DRISSAPAGGLTSL 200 Q +R + PAGG T+L Sbjct: 243 QHPERKNCGPAGGNTTL 259 >gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS 118892] gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum CBS 118892] Length = 267 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 55 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C TTPC L GC +K+++ + + DG Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-------STGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G +++ P Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALRASAVAAENGTQSSVKVPPP 233 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253 >gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10] gi|150854112|gb|EDN29304.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10] Length = 271 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 99/161 (61%), Gaps = 3/161 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ ++ + E++ +YPP ++AV+P+L Q Q G+ S + + VA +L+M +RV Sbjct: 33 FKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQHGFTSLSVMNEVARLLEMPPMRV 92 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFYT + +PVG + HVQ C TTPC L GC + +++ + KP H DG Sbjct: 93 YEVATFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIEGHLGIKPGHTTKDGLF 151 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 ++ EVEC GACVNAPMV I D YEDLTPE ++ A + Sbjct: 152 TFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQS 192 >gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14] Length = 267 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 8/187 (4%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 SSF F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+ VA I+D+ Sbjct: 45 SSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMNKVARIVDVKP 104 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ + K DG Sbjct: 105 IQVYEVATFYTMFNREKVG-KFFIQLCGTTPCMICGSEEIKHTIEEHLGIKEGETTKDGM 163 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPMV I D YE+LTPE +E+++A GQ P++ + S Sbjct: 164 FTLREVECLGACANAPMVQINDDFYENLTPETTKELLEACKCGQ------PPKMSKWGSL 217 Query: 193 PAGGLTS 199 P G S Sbjct: 218 PLNGQLS 224 >gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda] gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda] Length = 184 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 2/156 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 FSFS ++ + ++I+ YP + SAV+ +L AQ Q W+S + IE VA +L M YI+ Sbjct: 9 FSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYIK 68 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V EIA+FYT F L P+G + H+Q+C TTPC LRG + ++ C+ + + + D + Sbjct: 69 VYEIASFYTMFNLQPIG-KYHIQICCTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLFT 127 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 E EC GAC NAP+V I D YE+LT +++EEII+ Sbjct: 128 VSETECLGACRNAPVVQINHDYYENLTNDKIEEIIN 163 >gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi] gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi] Length = 248 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 112/189 (59%), Gaps = 5/189 (2%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S F F+ E+ E++S YP + + A++PLL AQ Q GW+ AI+ VA++L + Sbjct: 43 SKFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLEPF 102 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+A+FYT F L+PVG + H++VC TTPC LRGC ++++ C +H K + D Sbjct: 103 AVWEVASFYTMFNLTPVG-KFHIKVCMTTPCQLRGCAQILQKCEELLHLKAGETSEDMEF 161 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSA 192 + + C GACV+AP++ + D YEDL + +E I+ G + P GP+ R ++ Sbjct: 162 TLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAGN---VPPCGPRKGRFANE 218 Query: 193 PAGGLTSLL 201 P+ G+T+L Sbjct: 219 PSSGVTTLF 227 >gi|145612669|ref|XP_367376.2| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] gi|145019806|gb|EDK04034.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] Length = 257 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/187 (40%), Positives = 107/187 (57%), Gaps = 3/187 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS ++ + EV+ RYPP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 58 FKFSAQNEKVITEVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISVMNEVARILEMPPMRV 117 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + VQ C TTPC L GC + +++ + ++ DG Sbjct: 118 YEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDAIVKAIKEELGISQGQTTPDGLF 176 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 ++ EVEC GACVNAPM+ I D YEDLTPE + ++ GP R S Sbjct: 177 TFIEVECLGACVNAPMIQINDDYYEDLTPETTKSLLAGLKDPSKAVPPAGPLSGRHSCEH 236 Query: 194 AGGLTSL 200 +GGLT+L Sbjct: 237 SGGLTNL 243 >gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC 6260] gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC 6260] Length = 251 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 3/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R + + F F+ ++ E+I++YPP ++AV+PLL Q Q G+ + + Sbjct: 39 ISVHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + H+QVC TTPC L G +++++ +N + Sbjct: 99 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYHLQVCTTTPCQLCGSDEVMDAIKNHL 157 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + EEVEC GACVN PM+ + D EDLT E+ E++ +G + Sbjct: 158 KIKPGQTTPDNLFTLEEVECLGACVNGPMMGVNDDYAEDLTGEKTVELLKNLQ--EGKPM 215 Query: 181 RPGPQIDRISSAPAGGLTSLL 201 GP R S P G LL Sbjct: 216 HVGPVSGRDSCEPFSGPKVLL 236 >gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama] gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str. Miyayama] Length = 181 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62 +R+A QP F FSEE++ V ++++YP SR +SAV+PLL Q Q E W+ AA++ Sbjct: 12 KRIAHASIQPDKFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMD 71 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L + I+V E+A+FY+ F +PVG ++VC TTPC LRG + LIE + ++ Sbjct: 72 HVAQLLGLPVIKVYEVASFYSMFNTAPVGKHT-IRVCRTTPCWLRGSDCLIEAAKRELGI 130 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 K H+ D S +EVEC GACV+AP+V I D +E+L E++ Sbjct: 131 KVGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELL 177 >gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 277 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 15/198 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F++ + VNE++S YP + QS +IP+L AQ+Q G WV AA++ +A I+ +A IR Sbjct: 69 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 128 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + K SDG S Sbjct: 129 VYEVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDIEDALLEHLGVKRNEVTSDGLFS 187 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+R+ E+++ +G+T G Sbjct: 188 VGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLR--RGETPPRGT 245 Query: 185 Q-IDRISSAPAGGLTSLL 201 Q +R + PAGG+T+LL Sbjct: 246 QNPERKNCGPAGGMTTLL 263 >gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus humanus corporis] gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus humanus corporis] Length = 242 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 3/200 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ +F F+ E+ +++ YP ++A++PLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPDVNFDFTPENMKRAEAIMAIYPEGHKRAALLPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT + P+G + H+QVC TTPC LR + ++ V + K+ Sbjct: 91 MHKVAEILNLPKMRVYEVATFYTMYMRKPMG-KYHIQVCTTTPCWLRDSDSIMNVIKKKL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV I D YEDLT E + +I++ + G+ Sbjct: 150 NINVGETTKDKLFTLSEVECLGACVNAPMVQINDDYYEDLTEESMNQILEDLANGRKP-- 207 Query: 181 RPGPQIDRISSAPAGGLTSL 200 + GPQ R S P GGLTSL Sbjct: 208 KAGPQSGRCSCEPHGGLTSL 227 >gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii] gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii] Length = 254 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 15/209 (7%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65 +++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ +A+ +A Sbjct: 37 SQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMNKIA 96 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + + K Sbjct: 97 EIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGVKRN 155 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTG 175 DG S E+EC G CVNAPMV++ T YEDLTP+R+ EI++ G Sbjct: 156 EVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEMLRKG 215 Query: 176 QGDTIRPGPQ-IDRISSAPAGGLTSLLDN 203 + + G Q RI PAGG T+LL + Sbjct: 216 EKPPV--GTQNPTRIKCGPAGGNTTLLSD 242 >gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii] gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii] Length = 222 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 15/209 (7%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65 +++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ +A+ +A Sbjct: 5 SQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMNKIA 64 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + + K Sbjct: 65 EIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGVKRN 123 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTG 175 DG S E+EC G CVNAPMV++ T YEDLTP+R+ EI++ G Sbjct: 124 EVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEMLRKG 183 Query: 176 QGDTIRPGPQ-IDRISSAPAGGLTSLLDN 203 + + G Q RI PAGG T+LL + Sbjct: 184 EKPPV--GTQNPTRIKCGPAGGNTTLLSD 210 >gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15] gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15] Length = 294 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 118/241 (48%), Gaps = 42/241 (17%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ + E++SRYP ++AV+PLL Q Q G+ S + Sbjct: 39 LNVHRDTPENNANIPFEFTAQNKELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + +P G + HVQ+C TTPCMLR + +++ C + + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRNPTG-KFHVQICTTTPCMLRDSDAVMKACEDTL 157 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STG 175 DG + EVEC GAC NAPMV I D YEDLT E ++ A +TG Sbjct: 158 GIHHGQTTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYESTVSLLKALRHASEATG 217 Query: 176 ----------------------------QGDTIR--------PGPQIDRISSAPAGGLTS 199 QG +I PGP R S PAGGLT Sbjct: 218 ANLGGADGLNTKGNNASPNSAGEDAINRQGRSIEAGNLKIPSPGPLSGRKSCEPAGGLTC 277 Query: 200 L 200 L Sbjct: 278 L 278 >gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis] Length = 253 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 123/205 (60%), Gaps = 29/205 (14%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + V E+I+ YP + QSAVI LL AQ+Q G W+ +A+ VA +L+MA IR Sbjct: 45 WEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVSAMNKVAEVLEMAPIR 104 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG-CE------KLIEVCRNKIHQKPLHR 127 V E+ATFYT F + VG + H+ VCGTTPCM+RG C+ K + V RN++ + Sbjct: 105 VFEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSCDIEGAILKHLGVKRNEVTK----- 158 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQG 177 DG S E+EC G CVNAPM+ + T YED+TP+R+ EI++ +G Sbjct: 159 --DGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEMLR--RG 214 Query: 178 DTIRPGPQ-IDRISSAPAGGLTSLL 201 +T G Q DRI + PAGG T+LL Sbjct: 215 ETPPVGTQNPDRIMAGPAGGNTTLL 239 >gi|312222072|emb|CBY02012.1| hypothetical protein [Leptosphaeria maculans] Length = 297 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 118/242 (48%), Gaps = 43/242 (17%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ ++E++SRYP ++AV+PLL Q Q G+ S + Sbjct: 41 LNVHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + PVG + HVQVC TTPCMLR + +++ C +++ Sbjct: 101 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLRDSDAVMKACEDEL 159 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-------- 172 DG + EVEC GAC NAPMV I D YEDLT + +I A Sbjct: 160 GIHHGETTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYDSTVALIKALRHAAQATG 219 Query: 173 ------------------STGQGDTI----------------RPGPQIDRISSAPAGGLT 198 + G GD + PGP R S PAGGLT Sbjct: 220 AQPGGKGLVSGAGNGNASNEGAGDKLVNQQGRGYDFGGVKVPTPGPLSGRKSCEPAGGLT 279 Query: 199 SL 200 L Sbjct: 280 CL 281 >gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis] Length = 1053 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 5/187 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSEE+ V + + YP +A++P+L AQ Q GW+ +A+ VA+++ + +R+ Sbjct: 43 FEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMNKVADVIGVPKMRI 102 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNS-DGTL 133 E+ATFYT + VG + HVQVC TTPCMLRG +++++ + + + + NS D Sbjct: 103 YEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLGSDAVGENSQDFMF 161 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GAC NAPM+ I D YEDLT + + I + G+ + GPQ R+++ P Sbjct: 162 TVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFNEIRAGKKPKM--GPQSGRLAAEP 219 Query: 194 AGGLTSL 200 GLTSL Sbjct: 220 ISGLTSL 226 >gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4] gi|74851521|sp|Q54F10|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; Flags: Precursor gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4] Length = 247 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65 E+ + + F F++E+ + V +++++YP QSA+IPLL AQ Q G W+S A++ VA Sbjct: 43 TEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLRAMDKVA 102 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +I +A + E+A+FYT F + +G VQVC TTPCMLRG ++I+ C++ + + Sbjct: 103 HICGIAPMTAYEVASFYTMFNRTKIG-ENFVQVCTTTPCMLRGSGEIIKTCKSHLGIQVG 161 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D + EVEC GACVNAPM+ I D YEDLT ++D + I GPQ Sbjct: 162 ETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNKPTKI--GPQ 219 Query: 186 IDRISSAPAGGLTSLLD 202 R ++ G T+LL+ Sbjct: 220 THRKAAEGPQGKTTLLE 236 >gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 241 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 27 ISVHRDTKEDNPNIPFEFTSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + ++E N + Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMEAITNHL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 KP D + +EVEC GACVNAPM+ I D +EDLTPE +++ G+ Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATVKLLQQLQEGK 201 >gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 305 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 9/195 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 100 FKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 159 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + SPVG + VQ C TTPC L GC + +++ + + K +DG Sbjct: 160 YEVASFYTMYNRSPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 218 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI------RPGPQID 187 ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A G+ +PGP Sbjct: 219 TFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGEASAAAKVPKPGPLTG 278 Query: 188 RISSAPAGGLTSLLD 202 R + + G T+LLD Sbjct: 279 RDTCENSKGQTNLLD 293 >gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis] Length = 293 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 15/195 (7%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72 + F F++ + E+ISRYP + SAVIPLL AQ+Q +GW+S AA+ VA +LDM Sbjct: 62 TEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGWLSLAAMNRVAKVLDMPE 121 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IRV E+ATFYT F S +G + HV VCGTTPCML+G + + + + + DG Sbjct: 122 IRVYEVATFYTMFNRSKMG-KYHVMVCGTTPCMLQGAKGIYKALKEHLGIDYGQTTPDGM 180 Query: 133 LSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQGDTIRP 182 + E+EC GACVNAPM+ + T YEDLTP IID +G + Sbjct: 181 FTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYEDLTPADTLAIIDTLK--KGGKPKV 238 Query: 183 GPQIDRISSAPAGGL 197 G Q R + PAG + Sbjct: 239 GSQ-HRSKAEPAGAV 252 >gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545] Length = 245 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 15/196 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E +A V E++ RYPP+ +SA+IPLL AQ+Q G ++S + VA IL++A IR Sbjct: 15 WDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQVMNRVAEILEVAPIR 74 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F PVG + HV VCGTTPCMLRG ++ + K DG + Sbjct: 75 VFEVATFYSMFNRQPVG-KYHVMVCGTTPCMLRGSREVNAALEQHLGIKKFENTPDGMFT 133 Query: 135 WEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G+CVNAPM+ + T YEDLTP ++ A GQ R G Sbjct: 134 LGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADAVAVVKALKAGQ--KPRVGS 191 Query: 185 QIDRISSAPAGGLTSL 200 Q R + P GG +L Sbjct: 192 Q-HRDKAEPMGGQQTL 206 >gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517] gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517] Length = 378 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 166 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 225 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C TTPC L GC +K+++ + + DG Sbjct: 226 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 284 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G +++ P Sbjct: 285 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQPSVKVPPP 344 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 345 GPLSGRHTCENSAGLTSLTE 364 >gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii 1704] gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii 1704] Length = 264 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 12/211 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + E F F+E++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L GC +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG-- 175 + + + D + EVEC GACVNAPMV I + YEDLTP+ ++++A Sbjct: 158 HLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQINDEYYEDLTPDTAVQLLEALKESAL 217 Query: 176 ---QGDTIR---PGPQIDRISSAPAGGLTSL 200 G ++ PGP R S + GLT+L Sbjct: 218 AGESGKKVKVPAPGPLSGRHSCENSAGLTNL 248 >gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 166 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +IRV Sbjct: 8 FSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIRV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D + Sbjct: 68 YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 127 KEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 164 >gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor [Metarhizium acridum CQMa 102] Length = 259 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 9/195 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 54 FKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + VQ C TTPC L GC + +++ + + K +DG Sbjct: 114 YEVASFYTMYNRNPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI------RPGPQID 187 ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A GD +PGP Sbjct: 173 TFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGDASAAAKVPKPGPLTG 232 Query: 188 RISSAPAGGLTSLLD 202 R + + G T+LLD Sbjct: 233 RDTCENSKGQTNLLD 247 >gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL YB-4239] gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL YB-4239] Length = 246 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 8/207 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 27 ISVHRETKEDNTTLPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNIQVCTTTPCQLCGSDGIMDAIKGYL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179 KP D + +EVEC GACVNAPM+ + D +EDLTPE +++ G GD Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVNDDYHEDLTPEATVDLLKKLKEG-GDNF 204 Query: 180 ----IRPGPQID-RISSAPAGGLTSLL 201 I GP ++ R S P G LL Sbjct: 205 ELSEIGVGPVLNKRESCEPFSGQKVLL 231 >gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium dendrobatidis JAM81] Length = 257 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 3/185 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ E+I++YP + A +PLL AQ Q GWVS +++ +A +L+M +RV Sbjct: 61 FEFTPAEMKRAQEIIAKYPAQYKKGATMPLLDLAQRQLGWVSISSMNYIAKLLEMPPMRV 120 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + PVG + +QVC TTPC L G + +++ + K SD + Sbjct: 121 YEVATFYTMYNRDPVG-KYFLQVCTTTPCQLCGSDAIVKAAEETLGIKLGETTSDNMFTL 179 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 EVEC GACVNAP++ + D YEDLT + + +++ S +G +PGP R++ P Sbjct: 180 VEVECAGACVNAPVMAVNDDYYEDLTVDATKSLLE--SIKKGTVPKPGPVSGRMNCEPRA 237 Query: 196 GLTSL 200 GLTSL Sbjct: 238 GLTSL 242 >gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens] Length = 243 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/205 (42%), Positives = 118/205 (57%), Gaps = 29/205 (14%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+ + V E++S YP + QSAVIPLL AQ+Q+G W+ A+ +A I+ A IR Sbjct: 35 WDFTPANMEKVKELLSHYPKNYKQSAVIPLLDLAQQQQGGWLPVQAMNRIAEIVGYAPIR 94 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE-------KLIEVCRNKIHQKPLHR 127 V E+ATFY+ F PVG R H+ VCGTTPCMLRG K + V RN++ Sbjct: 95 VYEVATFYSMFNRQPVG-RYHLLVCGTTPCMLRGSREIEDALLKHLNVARNEV------- 146 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQG 177 DG S EVEC G+CVNAPM+++ + YEDLT ER+ E+++ QG Sbjct: 147 TKDGLFSVGEVECMGSCVNAPMIVVADYSNGVEGYSYNYYEDLTTERVVELVEELR--QG 204 Query: 178 DTIRPGPQI-DRISSAPAGGLTSLL 201 + G Q +RI+ PAGG T+LL Sbjct: 205 KKPKWGTQHPERINCGPAGGNTTLL 229 >gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1] Length = 260 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 10/209 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ + E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LMVHRNTEDNNPDIPFKFNAENQKVMAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + VQ+C TTPC L GC + +++ + Sbjct: 99 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQICTTTPCQLGGCGSDVIVKAIKE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 ++ + +DG + EVEC GACVNAPM+ I D YEDLTP +++++ + + Sbjct: 158 ELGIEQGQTTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPASVKDLLKSLRSKATA 217 Query: 179 T-------IRPGPQIDRISSAPAGGLTSL 200 T +PGP R + GLTSL Sbjct: 218 TDPSTVNVPKPGPLSGRKDCENSAGLTSL 246 >gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 252 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 98/159 (61%), Gaps = 3/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ ++ + E++ RYPP ++AV+P+L Q Q G+ S + + VA IL+M +RV Sbjct: 54 FKFTPQNEAVIAELLKRYPPQYKKAAVMPVLDLGQRQHGFTSISVMNEVARILEMPPMRV 113 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + +Q C TTPC L GC + +++ + K +DG Sbjct: 114 YEVASFYTMYNRTPVG-KFFIQACTTTPCQLGGCGSDAIVKTIEEHLGIKQGETTADGLF 172 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S+ EVEC GACVNAPMV I D YEDLTPE ++IDA Sbjct: 173 SYLEVECLGACVNAPMVQINDDYYEDLTPETTRQLIDAL 211 >gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi] gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi] Length = 166 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +IRV Sbjct: 8 FSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIRV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D + Sbjct: 68 YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +EVEC GAC+NAP+V I D YE+LTPE++E II S Sbjct: 127 KEVECLGACINAPVVQINNDFYENLTPEKVENIIAELS 164 >gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis] gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis] Length = 247 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 3/186 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+EE+ V E++ YP + A++PLL AQ Q GW+ AI+ VA +L + V Sbjct: 44 FEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVAEVLKLEPFAV 103 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FYT F + P+G + V+VC TTPC LRGC ++ +C + K + D + Sbjct: 104 WEVANFYTMFNMRPIG-KYRVKVCMTTPCQLRGCADVLRICEKTLDLKDGETSKDMEFTL 162 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 C GACVN P++ + D YEDL + E+I+ G+ PGP+ R +S P Sbjct: 163 NTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGKLPP--PGPRSGRFASEPIT 220 Query: 196 GLTSLL 201 G TSLL Sbjct: 221 GPTSLL 226 >gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis] Length = 241 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 5/187 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FSEE+ V + + YP +A++P+L AQ Q GW+ +A+ VA+++ + +R+ Sbjct: 43 FEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMNKVADVIGVPKMRI 102 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNS-DGTL 133 E+ATFYT + VG + HVQVC TTPCMLRG +++++ + + + + NS D Sbjct: 103 YEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLGSDAVGENSQDFMF 161 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GAC NAPM+ I D YEDLT + + I G+ + GPQ R+++ P Sbjct: 162 TVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFSEIRAGKKPKM--GPQSGRLAAEP 219 Query: 194 AGGLTSL 200 GLTSL Sbjct: 220 ISGLTSL 226 >gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa] gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa] Length = 254 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 113/199 (56%), Gaps = 19/199 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FS + V E++S YP + QSAVIPLL AQ+Q G W+ +A+ VA ++++A IR Sbjct: 46 WEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 105 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + + K DG S Sbjct: 106 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 164 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + YED+TP+R+ EI++ G+ T Sbjct: 165 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGEKPPHGTQN 224 Query: 182 PGPQIDRISSAPAGGLTSL 200 P RI P GG T+L Sbjct: 225 P----KRIKCGPEGGNTTL 239 >gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1] gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1] Length = 297 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 110/227 (48%), Gaps = 43/227 (18%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 56 FKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRV 115 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + PVG + HVQVC TTPCML + +++ C + + DG ++ Sbjct: 116 YEVATFYTMYNRDPVG-KFHVQVCTTTPCMLCDSDSVMKACEDVLGVHHGETTPDGLFTF 174 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----------------------- 172 EVEC GAC NAPMV I D YEDLT E ++ A Sbjct: 175 SEVECLGACANAPMVQINDDYYEDLTYESTVNLLKALKHAAQATGAQPGDKGLASGAGKG 234 Query: 173 ---STGQGDTI----------------RPGPQIDRISSAPAGGLTSL 200 G GD + PGP R S PAGGLT L Sbjct: 235 TTTGEGAGDAVANAQGRQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 281 >gi|115618122|ref|XP_797683.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] gi|115950060|ref|XP_001178877.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] Length = 152 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 3/139 (2%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+ K Sbjct: 4 VADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKLGIK 62 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T +PG Sbjct: 63 VGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TPKPG 120 Query: 184 PQIDRISSAPAGGLTSLLD 202 P+ R +S P GGLTSL+D Sbjct: 121 PRNARFASEPEGGLTSLID 139 >gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus ovalis] Length = 259 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 6/192 (3%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + F F+ E+ +N ++ RYP + +SAV+ LL AQ+Q G +++ AA+ VA IL+M Sbjct: 39 TYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLAAMNKVAKILEMTN 98 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+A FY+ F VG + +Q+CGTTPC+L G +++ C + + K DG Sbjct: 99 LNVYEVAAFYSMFNREKVG-KIRLQICGTTPCLLCGARDIMKACEDHLGIKMGGTTKDGM 157 Query: 133 LSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RIS 190 + EEVEC G C NAPM+ + + YEDLTPE + E+++ F +G+ I+ GPQ R + Sbjct: 158 FTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFR--KGEEIKAGPQTKGRKN 215 Query: 191 SAPAGGLTSLLD 202 + G T+L D Sbjct: 216 AEGPLGRTTLND 227 >gi|254796983|ref|YP_003081820.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str. Illinois] gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str. Illinois] Length = 172 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62 +R+A QP F FSEE++ V ++++YP SR +SA++PLL Q+Q E W+ AA++ Sbjct: 3 KRIAHASIQPDKFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMD 62 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L + I+V E+ +FY+ F +PVG ++VC TTPC LRG + L + + ++ Sbjct: 63 HVAQLLGLPAIKVYEVVSFYSMFNTAPVGKHT-IRVCRTTPCWLRGSDCLTKAAKRELGI 121 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 K H D S +EVEC GACVNAP+V I D +E+L + E++ Sbjct: 122 KVGHTTEDNKFSLDEVECLGACVNAPVVQINDDYFENLDEKSFLELL 168 >gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1] Length = 243 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 5/204 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ +F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 29 ISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDSIMKAITDYL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ I D +EDL+PE ++ G+ + Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGK-ELT 206 Query: 181 RPGPQID--RISSAPAGGLTSLLD 202 GP +D R S P G LL+ Sbjct: 207 EIGP-VDGKRQSCEPFSGPKVLLN 229 >gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase, E subunit [Magnetococcus sp. MC-1] gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus sp. MC-1] Length = 170 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 2/159 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRV 75 +FS+E+ V + +RYP + QSA++P+L AQ E GW+SRA+++ VA ++ +A IRV Sbjct: 11 AFSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAELMGLAPIRV 70 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + L PVG + HVQVC C L G + + E + ++ + DG + Sbjct: 71 YEVATFYTMYNLKPVG-KHHVQVCTNISCWLCGSDGIGEAVKQRLEIEYGQTTEDGNFTL 129 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 EVEC GACVNAPM I D YE+LTPE +IID + Sbjct: 130 SEVECLGACVNAPMFQINDDYYENLTPETAVKIIDELAN 168 >gi|190570998|ref|YP_001975356.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra cautella] Length = 166 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSF+ ++ + I YP R SAV+PLL QEQ GWV +A+ VA++L + +IRV Sbjct: 8 FSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHIRV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D + Sbjct: 68 YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +EVEC GACVNAP+V I D YE+LTPE++E II S+ Sbjct: 127 KEVECLGACVNAPVVQINNDFYENLTPEKVENIIAELSS 165 >gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 243 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 114/204 (55%), Gaps = 5/204 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 29 ISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMKAITDYL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ I D +EDLTPE ++ G+ + Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATINLLKQLQEGK-ELT 206 Query: 181 RPGPQID--RISSAPAGGLTSLLD 202 GP +D R S P G LL+ Sbjct: 207 EIGP-VDGKRQSCEPFSGPKVLLN 229 >gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis] gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis] Length = 246 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 7/193 (3%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 ++ F F EE+ +IS YP + A++PLL AQ Q GW+ AI+ VA +L + Sbjct: 39 YEKLKFEFDEENKKRAEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVAEMLKL 98 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V E+A FYT F L P+G ++VC TTPC LRGC+++ C N + K + D Sbjct: 99 EPFVVWEVANFYTMFNLRPIGM-FRLKVCMTTPCRLRGCDEIWRTCENVLKLKDGETSKD 157 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP--GPQIDR 188 + C GACVN P++ + D YEDL E+++ +G I P GP+ DR Sbjct: 158 MQFTLTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSG----IMPPAGPRRDR 213 Query: 189 ISSAPAGGLTSLL 201 +S P GLTSLL Sbjct: 214 FASEPRSGLTSLL 226 >gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Phytophthora infestans T30-4] gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Phytophthora infestans T30-4] Length = 271 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 2/169 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R E+ + F F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+ Sbjct: 39 HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I+D I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ + N + Sbjct: 99 KVARIVDAKPIQVYEVATFYTMFNREKVG-KYFIQLCGTTPCMICGSEEIKKTIENHLGI 157 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 K DG + EVEC GAC NAPMV I D YE+LT E E++DA Sbjct: 158 KEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTAETTRELLDA 206 >gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp. lyrata] gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp. lyrata] Length = 255 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A+ VA ++++A IR Sbjct: 47 WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 106 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + K DG S Sbjct: 107 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 165 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + +ED+TPE++ EI++ G+ T Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 225 Query: 182 PGPQIDRISSAPAGGLTSLL 201 P RI P GG T+LL Sbjct: 226 P----KRIKCGPEGGNTTLL 241 >gi|255627569|gb|ACU14129.1| unknown [Glycine max] Length = 251 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + V E++S YP + QSA IPLL AQ+Q G W+ +A++ VA I+++ IR Sbjct: 43 WEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIR 102 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + E + K DG S Sbjct: 103 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFS 161 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + +ED+TPE++ EI++ G+ T Sbjct: 162 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIVEKLRKGEKPPHGTQN 221 Query: 182 PGPQIDRISSAPAGGLTSLL 201 P RI S P GG T+LL Sbjct: 222 P----RRIKSGPEGGNTTLL 237 >gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa] gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa] Length = 254 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 23/201 (11%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+ + V E+IS YP + QSAVIPLL AQ+Q G W+ +A+ VA ++++A IR Sbjct: 46 WEFTAANKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 105 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + + K DG S Sbjct: 106 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALVKHLGVKRNEVTKDGLFS 164 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182 E+EC G CVNAPM+ + + YED+TP+R+ EI++ G+ +P Sbjct: 165 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGE----KPPH 220 Query: 183 ---GPQIDRISSAPAGGLTSL 200 PQ R P GG T+L Sbjct: 221 GTQNPQ--RTKCGPEGGNTTL 239 >gi|255644244|gb|ACU22686.1| unknown [Glycine max] Length = 251 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F+E + V E++S YP + QSA IPLL AQ+Q G W+ +A++ VA I+++ IR Sbjct: 43 WEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIR 102 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + E + K DG S Sbjct: 103 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFS 161 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + +ED+TPE++ EI++ G+ T Sbjct: 162 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 221 Query: 182 PGPQIDRISSAPAGGLTSLL 201 P RI S P GG T+LL Sbjct: 222 P----RRIKSGPEGGNTTLL 237 >gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299] gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299] Length = 249 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 15/197 (7%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYI 73 S+ F E + V++++ RYPP+ +SA+IPLL AQ+ +G++S A+ VA +L++A I Sbjct: 18 SWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMNRVAEMLEVAPI 77 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ATFY+ F + VG + HV VCGTTPCMLRG + + + + K DG Sbjct: 78 RVYEVATFYSMFNRTKVG-KYHVMVCGTTPCMLRGSRDIEKALSDYMGVKKFESTPDGVF 136 Query: 134 SWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + E+EC G CVNAPM+ + + YEDLTP ++ A GQ R G Sbjct: 137 TLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADAVAVVKALKAGQ--KPRVG 194 Query: 184 PQIDRISSAPAGGLTSL 200 Q R + P GG T+L Sbjct: 195 SQ-HRDKAEPMGGQTTL 210 >gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena thermophila] gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena thermophila SB210] Length = 274 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 6/175 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+ E+ + +++++YP + +SAV+PLL QEQ WV +A++ +A +L+M I Sbjct: 42 FEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLSAMKKIAKLLEMPEID 101 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT + PVG + H+Q+CGTTPC L G ++ + K H ++DG + Sbjct: 102 VYEVATFYTMYNREPVG-KFHLQICGTTPCQLCGSREITKAIEEYTQTKLGHTSADGKWT 160 Query: 135 WEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 EEVEC GAC NAPM+ + K YEDLT E + +++ +G T + GPQ R Sbjct: 161 LEEVECLGACSNAPMIQVNNKWVYEDLTTENVVKLLKDLESG---TDKKGPQNHR 212 >gi|18411985|ref|NP_567244.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Arabidopsis thaliana] gi|55584146|sp|O22769|NDUV2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial; Flags: Precursor gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana] gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana] gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis thaliana] Length = 255 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 19/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A+ VA ++++A IR Sbjct: 47 WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIR 106 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + K DG S Sbjct: 107 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 165 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181 E+EC G CVNAPM+ + + +ED+TPE++ EI++ G+ T Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 225 Query: 182 PGPQIDRISSAPAGGLTSLL 201 P RI P GG +LL Sbjct: 226 P----KRIKCGPEGGNKTLL 241 >gi|225437209|ref|XP_002281655.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera] Length = 254 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 23/202 (11%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ +A++ VA ++++A IR Sbjct: 46 WEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIR 105 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + + K DG S Sbjct: 106 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 164 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182 E+EC G CVNAPM+ + + YED+TP+R+ EI++ G+ +P Sbjct: 165 VGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGE----KPPH 220 Query: 183 ---GPQIDRISSAPAGGLTSLL 201 PQ R P GG T+LL Sbjct: 221 GTQNPQ--RTRCGPEGGNTTLL 240 >gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium tetraurelia strain d4-2] gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium tetraurelia] gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 113/187 (60%), Gaps = 6/187 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++ +A IL++ + Sbjct: 36 FDFTDENYKKIEAILTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++ K +DG + Sbjct: 96 VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYT 154 Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + GPQ R ++ Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211 Query: 194 AGGLTSL 200 G T+L Sbjct: 212 PQGRTTL 218 >gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana] gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana] Length = 244 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 19/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A+ VA ++++A IR Sbjct: 36 WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIR 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + K DG S Sbjct: 96 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 154 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQG---DTIR 181 E+EC G CVNAPM+ + + +ED+TPE++ EI++ G+ T Sbjct: 155 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 214 Query: 182 PGPQIDRISSAPAGGLTSLL 201 P RI P GG +LL Sbjct: 215 P----KRIKCGPEGGNKTLL 230 >gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera] Length = 243 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 23/202 (11%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ +A++ VA ++++A IR Sbjct: 35 WEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIR 94 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + + K DG S Sbjct: 95 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 153 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182 E+EC G CVNAPM+ + + YED+TP+R+ EI++ G+ +P Sbjct: 154 VGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGE----KPPH 209 Query: 183 ---GPQIDRISSAPAGGLTSLL 201 PQ R P GG T+LL Sbjct: 210 GTQNPQ--RTRCGPEGGNTTLL 229 >gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 114/187 (60%), Gaps = 6/187 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F++E+ + ++S++P + +S IPLLM AQ+Q ++S +A++ +A IL++ + Sbjct: 36 FDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E A+FY+ F VG + H+QVCGTTPC L G + +I+ +++ K ++DG + Sbjct: 96 VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKAIEQQLNIKNGETSADGLFT 154 Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + GPQ R ++ Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211 Query: 194 AGGLTSL 200 G T+L Sbjct: 212 PQGRTTL 218 >gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella graminicola M1.001] Length = 263 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP ++AV+P+L Q Q G+ S + + VA +L+M RV Sbjct: 55 FKFSKENEAVIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPQRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133 E+A+FYT + +PVG + +Q C TTPC L G + +++ + + K DG Sbjct: 115 YEVASFYTMYNRTPVG-KYFIQACTTTPCQLGGVGSDVIVKAIIDHLGIKQGETTKDGLF 173 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 174 TLLEVECLGACVNAPMVQINDDYYEDLTPETTVQLLDAL 212 >gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 113/187 (60%), Gaps = 6/187 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++ +A IL++ + Sbjct: 36 FDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++ K +DG + Sbjct: 96 VYETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYT 154 Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + GPQ R ++ Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211 Query: 194 AGGLTSL 200 G T+L Sbjct: 212 PQGRTTL 218 >gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 166 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSF+ E+ + I YP + SAV+PLL QEQ GWV A+ VA++L + +IRV Sbjct: 8 FSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHIRV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FYT + L PVG + ++VC TTPC L E+++ + K+ D + Sbjct: 68 YEVANFYTMYNLKPVG-KYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLFTL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 127 KEVECFGACVNAPVVQINNDFYENLTPEKVESIIAELSN 165 >gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus] Length = 278 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 13/203 (6%) Query: 3 VRRLAEEEFQPSS-----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WV 56 V +L + + P + F F++E+ V +++++YP + Q+++IPLL AQ Q G W+ Sbjct: 43 VHQLGQHKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWL 102 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 AA+E VA I+ ++V E+ATFYT F G + +Q+CGTTPCM+ G E + + Sbjct: 103 PLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRG-KHFIQLCGTTPCMVCGSEDIKKTI 161 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +++ K +DG + EVEC GAC NAPMV I D +E LTPE ++E+++ G+ Sbjct: 162 MDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGE 221 Query: 177 GDTIRPGPQIDRISSAPAGGLTS 199 P++ R S P G S Sbjct: 222 ------TPEMGRWGSLPLNGQVS 238 >gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 6/187 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F++E+ + +++++P + +S IPLLM AQ+Q ++S A++ +A IL++ + Sbjct: 36 FDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLTAMKKIAKILEIPEMD 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E A+FY+ F VG + H+QVCGTTPC L G +++ K++ K ++DG + Sbjct: 96 VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSRDIMKAIEQKLNIKNGETSADGLFT 154 Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + GPQ R ++ Sbjct: 155 LQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211 Query: 194 AGGLTSL 200 G T+L Sbjct: 212 PQGRTTL 218 >gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] Length = 161 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76 FSEE V E+I+RYP + +SA+IP+L AQE GW+S ++ VA++L + I V Sbjct: 2 FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F L PVG R +VC T PCMLRG + +I+ + K+ DG + + Sbjct: 62 EVATFYSMFNLQPVG-RYVFEVCQTGPCMLRGSDNIIDYIKKKLDIGVGQTTKDGLFTLK 120 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 VEC GAC APM+ +GK E LTPE+++ II+ Sbjct: 121 TVECLGACGYAPMMQLGKHYREHLTPEKVDAIIE 154 >gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] Length = 261 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 8/187 (4%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + F F+EE+ VN+++S+YP + QS +IPLL AQ Q G W+ AA++ VA I+ A Sbjct: 43 TYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAAMDKVAQIVGAAP 102 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 RV E+A+FYT F + VG + +Q+CGTTPCM+ G E + + + K DG Sbjct: 103 SRVYEVASFYTMFNRTKVG-KYFIQLCGTTPCMICGSEDIKKTIEKHLGIKNGETTKDGM 161 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 + EVEC GAC NAPM+ + D YE L + + E+++A G +P P + + S Sbjct: 162 FTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAG-----KP-PAMGKWGSL 215 Query: 193 PAGGLTS 199 P G S Sbjct: 216 PMNGQVS 222 >gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum S5] gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum S5] Length = 161 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+F+EE+ E++ RYP + S +P L AQ QEGWVS+ A+E +A L++ V Sbjct: 7 FAFNEETERQFQELLKRYPIKK--SLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPVTDV 64 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + L PVG + H+Q+C T C LRG E+++ KI P H +DG S Sbjct: 65 YEVATFYTMYNLHPVG-KYHIQLCRTLSCDLRGKEEILRHIVGKIGITPGHTTADGRFSL 123 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +VEC G+C + PM+ + D +E+LTP+R+++I+D Sbjct: 124 VQVECLGSCGSGPMMQLNDDYHENLTPQRVDQILDQL 160 >gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis] Length = 267 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 7/184 (3%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + F F+ E+ V+E++ RYP + QSAV+PLL AQ Q G ++ AA+ VA IL+M Sbjct: 45 TPFDFTAENYRRVHEIMKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMNKVAEILEMPP 104 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 ++V E+ TFYT ++ VG + +Q CGTTPCML G E++ + ++ K DG Sbjct: 105 VKVYEVVTFYTMYRTEKVG-KFFIQACGTTPCMLCGSEEIFQTLEKELGIKDGETTKDGM 163 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 S +VEC GAC NAPMV I D YE LTP+ E+++ + +G P +++ S Sbjct: 164 FSLLKVECLGACANAPMVQINDDYYECLTPKTTVELLN-YIRKEGKL----PPLNKSGSK 218 Query: 193 PAGG 196 P G Sbjct: 219 PMNG 222 >gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus] gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus] Length = 152 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/137 (48%), Positives = 86/137 (62%), Gaps = 3/137 (2%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ K Sbjct: 4 VAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIK 62 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +PG Sbjct: 63 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPG 120 Query: 184 PQIDRISSAPAGGLTSL 200 P+ R PAGGLTSL Sbjct: 121 PRSGRFCCEPAGGLTSL 137 >gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922] gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922] Length = 163 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 101/154 (65%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 FSE + +N++++RYP + +SA+IP+L AQE+ GW+ ++ VA +LD+ + V Sbjct: 5 FSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLPVEVY 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FYT FQL+PVG +QVC T PCM++G + +I+ +NK++ DG + + Sbjct: 65 EVASFYTMFQLNPVGKYV-LQVCQTGPCMIKGADHIIQHIKNKLNIDIGGTTEDGLFTLQ 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 VEC GAC APM+ +GK E LT E+++E+I+ Sbjct: 124 TVECLGACGYAPMMQLGKTYREFLTTEKVDELIE 157 >gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS 113480] gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS 113480] Length = 263 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 110/200 (55%), Gaps = 18/200 (9%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+E+ ++E++ RYPP + AV+PLL Q Q G+ S + + VA +L+M +RV Sbjct: 55 FKFSQENLTVIDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132 E+ATFYT + PVG + VQ+C T L GC +K+++ + + DG Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTT----LGGCGSDKIVKAITEHLGVSSHGATTPDGI 169 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182 + EVEC GACVNAPMV I D YEDLTPE +++DA G ++ P Sbjct: 170 FTVLEVECLGACVNAPMVQINDDYYEDLTPETTIQLLDALKASAVAAENGTQSNVKVPPP 229 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GP R + + GLTSL + Sbjct: 230 GPLSGRKTCENSAGLTSLTE 249 >gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae] gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae] Length = 236 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+EE+ V ++ YP + + A+IPLL AQ Q+GW+S +A++ VA+++ + ++ Sbjct: 37 FKFTEENKRRVKALLVWYPEAEWKGALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMKA 96 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + ++VC +TPC LRG + + +C + K + D + Sbjct: 97 YEAAQFYTMFFMKPRG-KYVIRVCTSTPCKLRGGDDIYALCETILKLKHGETSPDMQFTL 155 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 ++ C GACVNAP++ + D YEDL + +++I++ + D + P GP+ R SS P Sbjct: 156 KDDYCLGACVNAPVLSVNDDFYEDLDEKSVKQILEDL---KNDKLPPSGPRNGRYSSEPK 212 Query: 195 GGLTSL 200 GGLTSL Sbjct: 213 GGLTSL 218 >gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Oncorhynchus mykiss] Length = 205 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 3/137 (2%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ K Sbjct: 57 VAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGIK 115 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ PG Sbjct: 116 VGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPPG 173 Query: 184 PQIDRISSAPAGGLTSL 200 P+ R S PAGGLTSL Sbjct: 174 PRNGRFSCEPAGGLTSL 190 >gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi] gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi] Length = 260 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 12/198 (6%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + F FS ES + +++++YP QS ++PLL AQ Q G W+ AAI +A I ++ Sbjct: 42 TPFDFSPESYAEIKKILAKYPSKHKQSGILPLLHLAQRQNGGWIPLAAINKIAEICEVNP 101 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V E +FYT F PVG + H+QVC TTPCM+ GC+ ++ + K DG Sbjct: 102 RNVFECVSFYTMFNTQPVG-KYHIQVCITTPCMITGCDNILATLEQHLGIKLGETTQDGL 160 Query: 133 LSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + E+EC G C NAPM+ + D +EDLT R EII+ G+ + G Sbjct: 161 FTLGEMECMGCCANAPMIAVSDYSNPPEFKYDYFEDLTAVRAIEIIEMLKKGEYPK-QIG 219 Query: 184 PQIDRISSAPAGGLTSLL 201 Q R + P GG +LL Sbjct: 220 SQNGRRYAEPLGGQKTLL 237 >gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406] gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406] Length = 177 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F FSE S + E+ +RYP R +SA++P+L AQ++ GW+ ++ VA++LD+ I Sbjct: 8 FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+A+FY+ + L PVG + + C T PC L G E+LIE +K+ K ++DG + Sbjct: 68 VYEVASFYSMYNLKPVG-KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQTSADGRFT 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + VEC G+C APM IG YE+LT E++++II+ F GQ D Sbjct: 127 IKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKIIEVF--GQPD 168 >gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Welgevonden] gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Welgevonden] gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Welgevonden] gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Welgevonden] Length = 183 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 2/180 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAA 60 ++++ + F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA Sbjct: 4 NIQKNCNTRYDIGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A+ LDM I V E+A FY+ + LS G + VQVC TTPC L G E +++ C+ + Sbjct: 64 MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSENVLKACKEFL 122 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + D + +EVEC GACVNAP+V I D YE L ++++ I+ + + I Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILIEYKKKENTII 182 >gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura] gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura] Length = 245 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 5/192 (2%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 + F F++E+ V +++ YP + Q A++PLL AQ Q GW+ +A+ VA +L + Sbjct: 39 YDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKI 98 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 ++ E A +YT F + P G V VC +TPC LRG + L++ C + +P + D Sbjct: 99 DPMQAYETAKYYTMFHMKPRGMYV-VAVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKD 157 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRI 189 S + C GACVN P+V I D YEDLT LE I+ G+ + P GP R Sbjct: 158 MQFSLKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGK---VPPAGPYSGRC 214 Query: 190 SSAPAGGLTSLL 201 SS P G T+LL Sbjct: 215 SSEPKDGATTLL 226 >gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC 35910] gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC 35910] Length = 169 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 2/163 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYI 73 + +F ES V+++I+RYP R +SA++P+L AQ E GW+ ++ VA +L + I Sbjct: 4 TIAFKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKPI 63 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFYT F + PVG ++VC T PCM+ G EK+++ R K++ K DG Sbjct: 64 EVYEVATFYTMFNMKPVGKYV-LEVCRTGPCMVCGSEKILDHIRTKLNIKDGETTEDGMF 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + + EC GAC APM+ +GK +E+LT E+++EI+D GQ Sbjct: 123 TLKPAECLGACGYAPMMQLGKFFHENLTIEKVDEILDLCRQGQ 165 >gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel] gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Gardel] Length = 183 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAA 60 ++++ + F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA Sbjct: 4 NIQKNCNTRYDTGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A+ LDM I V E+A FY+ + LS G + VQVC TTPC L G + +++ C+ + Sbjct: 64 MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDNVLKACKEFL 122 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + + D + +EVEC GACVNAP+V I D YE L ++++ I+ Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNIL 171 >gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba] gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba] Length = 241 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 37 FEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 96 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 97 FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 155 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L I+ + + D + P GP+ R +S P Sbjct: 156 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 212 Query: 195 GGLTSL 200 GGLT+L Sbjct: 213 GGLTTL 218 >gi|218508847|ref|ZP_03506725.1| NADH dehydrogenase subunit E [Rhizobium etli Brasil 5] Length = 249 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/87 (70%), Positives = 67/87 (77%) Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 ++GTLSWEEV C GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I+PG QIDR Sbjct: 1 AEGTLSWEEVVCLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASIKPGTQIDR 60 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDD 215 I SAP GG TSL K R + KK D Sbjct: 61 IFSAPEGGPTSLTTEEPKARTRAKKAD 87 >gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri] gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri] Length = 265 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 120/214 (56%), Gaps = 15/214 (7%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAI 61 V R E+ +++F V+ ++ RYP + +SA+IPLL AQ+Q +G ++ A + Sbjct: 26 VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A++L++A IRV E+ATFY+ F +G + HV VCGTTPCMLRG ++ + + Sbjct: 86 NHIADVLEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGSREIEKALEEWMG 144 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171 K + GT + E+EC G CVNAPM+ + + YEDLTP+ ++ +A Sbjct: 145 VKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEA 204 Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNS 205 G+ + R G QI R + P GLT+L + S Sbjct: 205 LKAGK--SPRVGSQI-RDKAEPIKGLTTLTGDPS 235 >gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta] gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 34 FEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 94 FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHGQTTPDMQFTL 152 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L I+ + + D + P GP+ R +S P Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLASIL---ADLRNDKLPPAGPRNGRCASEPK 209 Query: 195 GGLTSL 200 GGLT+L Sbjct: 210 GGLTTL 215 >gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas] gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str. Arkansas] Length = 181 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MS + E +F F++++ N+ IS+YP R SAV+ LL AQ+Q G++ + Sbjct: 1 MSNIQKNSNEHYTETFKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPLS 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A+ L M I V E+A FY+ + LSP G + +QVC TTPC L G + +++ C+ Sbjct: 61 AMNYIADFLGMRLIHVYEVAKFYSMYNLSPTG-KYLIQVCRTTPCWLCGSDDILKSCKEL 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ SD + +EVEC GACVNAP++ I D YE LTP+++++I+ Sbjct: 120 LNICVGETTSDNLFTLKEVECLGACVNAPVMQINDDYYEKLTPDKVKDIL 169 >gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster] gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster] gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster] gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 34 FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 94 FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 152 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L I+ + + D + P GP+ R +S P Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 209 Query: 195 GGLTSL 200 GGLT+L Sbjct: 210 GGLTTL 215 >gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 260 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+ E+ V ++++YP + Q+A+IPLL AQ Q G W+ A+ VA I ++A +R Sbjct: 44 FDFTLENYDRVKYIMAKYPNNYKQAAMIPLLDLAQRQHGGWLPLTAMHKVAAICEVAPVR 103 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+A+FYT F +PVG + +Q+CGTTPCM+ G E + + + K DG + Sbjct: 104 VYEVASFYTMFNRNPVG-KYFIQLCGTTPCMICGSEDIKQTIEKHLGIKNGETTKDGLFT 162 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 EVEC GAC NAPMV + D YE LTP+ ++++ G P + + S P Sbjct: 163 LLEVECLGACANAPMVQLNDDYYECLTPDTTIALLESCKAGN------PPAMGKWGSLPM 216 Query: 195 GGLTS 199 G S Sbjct: 217 NGQVS 221 >gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia] gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia] Length = 241 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 37 FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAENIKIDPMEA 96 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 97 FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 155 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L I+ + + D + P GP+ R +S P Sbjct: 156 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 212 Query: 195 GGLTSL 200 GGLT+L Sbjct: 213 GGLTTL 218 >gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens] Length = 265 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F FS ++ + ++ +YP + S +IPLL AQ Q G W+ AA++ VA + A Sbjct: 47 TTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLAAMDKVAKYVGCAP 106 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +RV E+ATFYT F VGT +Q+CGTTPCM+ G E + + + + K + DG Sbjct: 107 MRVYEVATFYTMFNREQVGTY-FIQLCGTTPCMVCGSEAIKKSIEDHLGIKEGETSKDGL 165 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EVEC GAC NAPM+ + D YE LTP+ + +++A G+ Sbjct: 166 FTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGE 209 >gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis DSM 1100] gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis DSM 1100] Length = 169 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 98/161 (60%), Gaps = 1/161 (0%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 + ++ +FS E V ++ RYP + +SA++P+L AQ+ GW+S ++ VA +LD+ Sbjct: 3 ETTNITFSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDIQ 62 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +I V E+ATFYT F L PVG ++VC T PCML G + +++ K+ + DG Sbjct: 63 HIEVYEVATFYTMFHLKPVGKNV-LEVCRTGPCMLVGSDNIVKYLEQKLSIQDGETTPDG 121 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + + VEC GAC PM+ +G+ +E L+ ER++++++ F Sbjct: 122 LFTIKTVECLGACGYGPMMQVGEKYHEFLSEERIDQLLEGF 162 >gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake] gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake] Length = 180 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 2/155 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74 F FS+E+ + I++YP R SAV+ LL AQ+Q G++ +AI +A+ L M I Sbjct: 16 FKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSSAINYIADFLGMQLIH 75 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+A FY+ + LS G + VQVC TTPC L G + +++ C+ ++ SD + Sbjct: 76 VYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDDVLKSCKELLNIGIGETTSDNLFT 134 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 +EVEC GACVNAP+V I D YE LTP+++++I+ Sbjct: 135 LKEVECLGACVNAPVVQINDDYYEKLTPDKMKDIL 169 >gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans] gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans] Length = 238 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 5/186 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 34 FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 94 FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 152 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L +I+ + + D + P GP+ R + P Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKIL---ADLRNDKLPPAGPRNGRFACEPK 209 Query: 195 GGLTSL 200 GGLT+L Sbjct: 210 GGLTTL 215 >gi|90569075|gb|ABD94428.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 56/74 (75%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LIE+C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIEICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga thiooxidans DMS010] gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga thiooxydans DMS010] Length = 170 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMA 71 P F+E ++ I++YP + QSAVIP L Q EGW++ A ++ +A+ L + Sbjct: 9 PKEGLFTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIP 68 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 I V E+ATFYT F+LSPVG + + VC CML G EK+++ K++ KP DG Sbjct: 69 AISVYEVATFYTMFELSPVG-KHKISVCTNISCMLCGSEKVMQHIEQKLNIKPGQTTEDG 127 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + +EVEC GACV APM+++ K +E LT +++++I+D ++ Sbjct: 128 LFTLKEVECLGACVGAPMMLVDKQYHEFLTEDKIDDILDRLNS 170 >gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 269 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 14/186 (7%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 NE++ ++P R SA IPLL AQ+Q+G ++ A+ +A I ++ + V E TFY+ F Sbjct: 64 NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q C TTPCML G ++L+E + ++ + SDG ++ E+EC GACV Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182 Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAG 195 NAPM+++ D EDLT E ++ +++ +G+ I GPQ DR + PAG Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRSGKPFKI--GPQRPDRKYAEPAG 240 Query: 196 GLTSLL 201 G TSLL Sbjct: 241 GRTSLL 246 >gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018] gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22] gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018] gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22] Length = 161 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +SF ++ E+ I E +SRYP + S ++P L QEQEGWVS A+ VA+ L I Sbjct: 2 NSFKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPI 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V E+ATFYT F L P+G + H+++C T CM+ G ++L + ++ + + ++DG Sbjct: 60 QVYEVATFYTMFNLKPIG-KYHIELCKTVSCMVCGAKELKQYIKDVLGLESGQTSADGLF 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ EVECQGAC +APM+ + + LT E+LE+II Sbjct: 119 TFTEVECQGACGDAPMIALNNVYHGKLTKEKLEKII 154 >gi|90569061|gb|ABD94421.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] gi|90569065|gb|ABD94423.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] gi|90569081|gb|ABD94431.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 55/74 (74%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|160872029|ref|ZP_02062161.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e) (ndh-1, chain e) [Rickettsiella grylli] gi|159120828|gb|EDP46166.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e) (ndh-1, chain e) [Rickettsiella grylli] Length = 168 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78 EE +++ I +YP +R QSA++ L AQE G ++S+ I+ VA+ L M+ + E+ Sbjct: 13 EELKKAIDKWIQKYPSTRRQSAILQALTIAQEYNGGYLSQYLIDAVADYLAMSRVTAYEV 72 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYT ++L PVG R + VC CML GC+K+++ + +++ +D + EV Sbjct: 73 ATFYTLYELKPVG-RHKIGVCTNISCMLSGCDKIVKHLQTRLNINLGETTADKKFTLREV 131 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC GAC NAP+V IG YE LTPE+L++I+D Sbjct: 132 ECLGACANAPVVHIGHRYYETLTPEKLDKILDGL 165 >gi|90569063|gb|ABD94422.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 56/74 (75%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIAGDP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569073|gb|ABD94427.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FALNEGGTLSWEEV 74 >gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ] gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ] Length = 171 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 SF F++ + + ISRYP R SAV+PLL Q+Q G +V R+AIE +A +L M + Sbjct: 8 SFRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRPV 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ FY+ + +PVG + VQVC TTPC LR + ++ C+ + + D Sbjct: 68 HVREVVEFYSMYNTAPVG-KYLVQVCKTTPCWLRRSDDVLNACKRVLCVRVGETTKDNLF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EVEC GACVNAP+V I D YE+L E +E+I+ G Sbjct: 127 TLREVECLGACVNAPVVQINDDYYENLDAESMEKILLKLKEGN 169 >gi|90569071|gb|ABD94426.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P Sbjct: 1 ADMLGMAYVRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIASDP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569067|gb|ABD94424.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] gi|90569069|gb|ABD94425.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] gi|90569079|gb|ABD94430.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|126680935|gb|ABO26551.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti] Length = 74 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIMICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|126680955|gb|ABO26552.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti] Length = 74 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 54/74 (72%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYIRVIEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569077|gb|ABD94429.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 54/74 (72%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYMRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|157867454|ref|XP_001682281.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major strain Friedlin] gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania major strain Friedlin] Length = 273 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 15/200 (7%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71 P F+ S I NE++ ++P R SA IPLL AQ+Q+G ++ A+ +A I ++ Sbjct: 51 PWDFTTSSYEKIH-NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVP 109 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ + SDG Sbjct: 110 PMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDG 168 Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++ E+EC GACVNAPM+++ D EDLT E ++ +++ G+ I Sbjct: 169 LITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRGGKPFKI-- 226 Query: 183 GPQ-IDRISSAPAGGLTSLL 201 G Q +DR + PAGG TSLL Sbjct: 227 GSQRLDRRYAEPAGGRTSLL 246 >gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus] Length = 211 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 48 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 K D + EVEC GACVNAPMV I + Y Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYY 203 >gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 217 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 15/198 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74 +SF E + V+E+++RYP + +SA+IPLL AQ Q G +S + + VA I ++A IR Sbjct: 13 WSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMNHVAEICEVAPIR 72 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFY+ F +G + HV VCGTTPCMLRG + + + DG + Sbjct: 73 VYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGARDIERALSEYMGVEKFETTKDGMFT 131 Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E+EC G CVNAPM+ + + YEDLTP+ + + G+ + R G Sbjct: 132 LGEMECMGCCVNAPMIAVADYRAGVEGYSYNYYEDLTPQSAVRVCEELKAGK--SPRVGS 189 Query: 185 QIDRISSAPAGGLTSLLD 202 Q R + P G T+LL+ Sbjct: 190 QT-RDKAEPLPGQTTLLE 206 >gi|154335106|ref|XP_001563793.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] Length = 274 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 14/186 (7%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +E++ ++P R SA IPLL AQ+Q+G ++ A+ +A I ++ + V E TFY+ F Sbjct: 64 HEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q C TTPCML G ++LIE + ++ + SDG ++ E+EC GACV Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELIERTMHYLNVRMHGTTSDGLITVGEMECLGACV 182 Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAG 195 NAPM+++ D EDLT + ++ +++ G+ I GPQ DR + PAG Sbjct: 183 NAPMLVVSDYSNPPNFSYDYVEDLTWDSIKTLVEDLRGGKPFKI--GPQRPDRRCAEPAG 240 Query: 196 GLTSLL 201 G TSLL Sbjct: 241 GRTSLL 246 >gi|222475163|ref|YP_002563579.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str. Florida] gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico] gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia] gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str. Florida] Length = 169 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L M + Sbjct: 8 FEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRPVH 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D + Sbjct: 68 VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 EVEC GACVNAP+V I +D YEDL E++ EI+ Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161 >gi|322498104|emb|CBZ33179.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 273 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 18/188 (9%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 NE++ ++P R SA IPLL AQ+Q+G ++ A+ +A I ++ + V E TFY+ F Sbjct: 64 NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q C TTPCML G ++L+E + ++ + SDG ++ E+EC GACV Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182 Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRISSAP 193 NAPM+++ D EDLT E ++ ++++ G+ I RP DR + P Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVESLRGGKPFKIGSQRP----DRRYAEP 238 Query: 194 AGGLTSLL 201 AGG TSLL Sbjct: 239 AGGRTSLL 246 >gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries] gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel] gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries] gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel] Length = 169 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L M + Sbjct: 8 FEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRPVH 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D + Sbjct: 68 VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 EVEC GACVNAP+V I +D YEDL E++ EI+ Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161 >gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi] Length = 169 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F F+ E+ + IS YP R SAV+PLL Q Q G ++ ++AI +A++L M + Sbjct: 8 FEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLLGMRPVH 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D + Sbjct: 68 VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 EVEC GACVNAP+V I +D YEDL E++ EI+ Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161 >gi|312890392|ref|ZP_07749929.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603] gi|311297162|gb|EFQ74294.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603] Length = 174 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S FSE+ N+V+SRYP + +S ++P+L Q + GWVS A++ VA L + +I Sbjct: 9 TSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVAEYLGIQHI 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+A+FY+ + L P G + ++VC T PC L G EK+++ K+ K DG Sbjct: 69 EVYEVASFYSMYLLRPQG-KYLLEVCRTGPCCLVGAEKIMDYIEQKLGVKEGEVTPDGLF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169 SW VEC AC AP++ IG + YE+LTPE++++++ Sbjct: 128 SWRGVECLAACGFAPVLQIGPEYTFYENLTPEKVDKLV 165 >gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer DSM 15868] gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer DSM 15868] gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer RA-YM] gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella anatipestifer RA-GD] Length = 170 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 99/163 (60%), Gaps = 2/163 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAY 72 + +F E+ V+++I+RYP + +SA+IP+L AQ E GW+S ++ VA +L++ Sbjct: 4 TVIAFKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILP 63 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFYT F + PVG ++VC T PCML G + +++ R ++ K DG Sbjct: 64 IEVYEVATFYTMFNMKPVGKYV-LEVCRTGPCMLNGSDDILDHIRKTLNIKDGETTEDGL 122 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 + + EC GAC APM+ +GK +E LT E+++EI++ G Sbjct: 123 FTLKPAECLGACGYAPMMQLGKFYHEHLTKEKVDEILELCRQG 165 >gi|146083233|ref|XP_001464685.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] Length = 273 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 108/188 (57%), Gaps = 18/188 (9%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 NE++ ++P R SA IPLL AQ+Q+G ++ A+ +A I ++ + V E TFY+ F Sbjct: 64 NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q C TTPCML G ++L+E + ++ + SDG ++ E+EC GACV Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182 Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRISSAP 193 NAPM+++ D EDLT E ++ +++ G+ I RP DR + P Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRGGKPFKIGSQRP----DRRYAEP 238 Query: 194 AGGLTSLL 201 AGG TSLL Sbjct: 239 AGGRTSLL 246 >gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 261 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 15/200 (7%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71 P FS + I N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ +A I ++ Sbjct: 39 PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 97 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++V E TFY+ F PVG + H+Q C TTPCML GC++L++ ++ K DG Sbjct: 98 PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVQRTEAYLNVKMHGTTKDG 156 Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++ E+EC GACVNAPM+++ D EDLT + ++++I+ +G + Sbjct: 157 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 214 Query: 183 GPQ-IDRISSAPAGGLTSLL 201 G Q DR + PAGG TS+ Sbjct: 215 GTQRSDRKWADPAGGRTSIF 234 >gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 284 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 104/227 (45%), Gaps = 56/227 (24%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + + VA IL+M +RV Sbjct: 56 FKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRV 115 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + PVG + HVQVC T CE ++ V + DG ++ Sbjct: 116 YEVATFYTMYNRDPVG-KFHVQVCTTA------CEDVLGVHHGET-------TPDGLFTF 161 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----------------------- 172 EVEC GAC NAPMV I D YEDLT + ++ A Sbjct: 162 SEVECLGACANAPMVQINDDYYEDLTYDSTVNLLKALKHAAQATGAQPGDKGLASGAGKG 221 Query: 173 ---STGQGDTI----------------RPGPQIDRISSAPAGGLTSL 200 G GD + PGP R S PAGGLT L Sbjct: 222 TATGEGAGDAVANAQARQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 268 >gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium 3519-10] gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium 3519-10] Length = 169 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 2/156 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYI 73 + +F E+ V ++I RYP + +SA+IP+L AQ E GW+ ++ VA++L + I Sbjct: 4 TIAFQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKPI 63 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFYT F + PVG ++VC T PCML G + +++ R ++ K +DG Sbjct: 64 EVYEVATFYTMFNMKPVGKYV-LEVCQTGPCMLSGSDGILQHIRETLNIKNGETTADGLF 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + ++ EC GAC APM+ +GK +E LT E+++EI+ Sbjct: 123 TLKQAECLGACGYAPMMQLGKFYHEHLTNEKVDEIL 158 >gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 261 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 15/200 (7%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71 P FS + I N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ +A I ++ Sbjct: 39 PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 97 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++ K DG Sbjct: 98 PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTKDG 156 Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++ E+EC GACVNAPM+++ D EDLT + ++++I+ +G + Sbjct: 157 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 214 Query: 183 GPQ-IDRISSAPAGGLTSLL 201 G Q DR + PAGG TS+ Sbjct: 215 GTQRSDRKWADPAGGRTSIF 234 >gi|322828601|gb|EFZ32337.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 257 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 15/200 (7%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71 P FS + I N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ +A I ++ Sbjct: 35 PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 93 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++ K DG Sbjct: 94 PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTKDG 152 Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++ E+EC GACVNAPM+++ D EDLT + ++++I+ +G + Sbjct: 153 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 210 Query: 183 GPQ-IDRISSAPAGGLTSLL 201 G Q DR + PAGG TS+ Sbjct: 211 GTQRSDRKWADPAGGRTSIF 230 >gi|288942130|ref|YP_003444370.1| NADH-quinone oxidoreductase subunit E [Allochromatium vinosum DSM 180] gi|288897502|gb|ADC63338.1| NADH-quinone oxidoreductase, E subunit [Allochromatium vinosum DSM 180] Length = 175 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 FS E ++ I++YPP QSAV+P L Q+ G W++ ++ VA LDM + V Sbjct: 20 FSPEIREAIDAHIAKYPPEWKQSAVMPALSIVQDANGGWLTTELMDDVAAYLDMPAVSVY 79 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY + L+P G R V VC + CML G E+LIE +K K SDG + + Sbjct: 80 EVATFYGMYDLTPQG-RHKVCVCNSISCMLNGSEELIEHVEHKYGVKVGETTSDGRFTLK 138 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EVEC GAC +AP V++ K +E LTPE L+++ID Sbjct: 139 EVECLGACRDAPAVLLDKVYHEKLTPESLDKLIDGL 174 >gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM 18053] gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM 18053] Length = 165 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 1/161 (0%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P+ +F+ E V E+I+RYP R +SA++P+L AQEQ GW+S ++ VA IL++ Sbjct: 5 PNLVAFTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIEP 64 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+ATFYT + L PVG ++ C T PC L G E + + K+ + +DG Sbjct: 65 VEVYEVATFYTMYHLDPVGKHV-IEYCRTGPCCLMGGEDVYGHLKKKLGIEAGETTADGK 123 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EVEC AC P+ I + Y +LT E++++II+ S Sbjct: 124 FTLKEVECLAACGWGPVFQIREQFYMNLTNEKVDQIIEDLS 164 >gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 157 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 9/157 (5%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIH 121 VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + + Sbjct: 4 VAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKKTLG 62 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 +P D + EVEC GACVNAPM+ I D YEDLT E II G+ + Sbjct: 63 IEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP--K 120 Query: 182 PGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGPQ R +S P GGLTS L+ K G K + D Sbjct: 121 PGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 156 >gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei TREU927] gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei] gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma brucei gambiense DAL972] Length = 273 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 111/200 (55%), Gaps = 12/200 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 N ++ ++P SR +SA+IPLL AQ Q+G ++ A+ +A I ++ ++V E TFY+ F Sbjct: 62 NVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAMYKIARICEVPPMQVFETVTFYSMF 121 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q C TTPCML GC++L+ ++ K DG ++ E++C GACV Sbjct: 122 NRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTRDGLITLGEMQCLGACV 180 Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 NAPM+++ D EDLT + ++E+I+ G+ + + DR S PAGG Sbjct: 181 NAPMLVVSDYSRPPHFSYDFVEDLTWDSVKELIENLREGRPFKVGTCRE-DRRWSEPAGG 239 Query: 197 LTSLLDNNSKKRGKKKKDDK 216 TS+ K + D K Sbjct: 240 RTSIFMKEPPKPYCRDLDAK 259 >gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM 2366] gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM 2366] Length = 170 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 98/167 (58%), Gaps = 5/167 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L EE QP FS + + +E++ RYP + +SA++P+L Q + GW+S AA++ VA Sbjct: 2 LKVEEQQPVEFSPALLTKF--DEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 LD+ I V E+A+FY+ + L P G ++VC T PC L G EKL+ NK+ K Sbjct: 60 AYLDIQDIEVYEVASFYSMYFLKPQGKYV-LEVCRTGPCCLVGAEKLMGHIENKLGVKEN 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170 +DG SW VEC AC P++ IG + YE+L ++++E+I+ Sbjct: 119 EVTADGLFSWRGVECLAACGYGPVLQIGPEYTFYENLNEQKVDELIE 165 >gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium spiritivorum ATCC 33861] gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium spiritivorum ATCC 33861] Length = 171 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 5/167 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA Sbjct: 2 LSVKESQP--VEFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + LD+ I V E+ATFYT + L P G ++VC T PC L G EK++ N++ K Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKGKYV-LEVCRTGPCCLVGAEKIMTHIENRLGVKEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170 DG SW VEC AC P++ IG D YE+LT E ++++I+ Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPDYTFYENLTEESVDKLIN 165 >gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132] gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132] Length = 161 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 + +F+E++ E+I+RYP R +SA++PLL AQEQ GWVS A ++ +A IL + + Sbjct: 3 NIAFTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPVE 62 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ATFYT F L PVG ++ C T PC G E++ + + ++ SDG + Sbjct: 63 VYEVATFYTMFHLEPVGKHV-IEYCRTGPCCTVGGEEVYDHLKERLGIASNQTTSDGLFT 121 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +EVEC AC P I + + L ++++IID S Sbjct: 122 LKEVECLAACGWGPCFQIKEKFFMQLDKAKVDQIIDELS 160 >gi|225871981|ref|YP_002753435.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC 51196] gi|225792810|gb|ACO32900.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC 51196] Length = 166 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 93/155 (60%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E A + +++ YP R SA+IP+L+ AQ++ G++S A + VA + +A + V Sbjct: 9 FSPELAARFDRLVTLYPVKR--SALIPMLLYAQDEVGYISDAVVAEVAERIGIAELDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + PVG + HVQVC CMLRG +L+ C ++ +DG S EE Sbjct: 67 VVSYYSLMRTKPVG-KYHVQVCTNIACMLRGGNELLHHCSKRLGIGNKQTTADGVFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VEC GAC AP V + D +E+LTPE +++++D + Sbjct: 126 VECIGACSWAPAVQVNYDFHENLTPELMDKVLDEY 160 >gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium spiritivorum ATCC 33300] gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium spiritivorum ATCC 33300] Length = 171 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 5/167 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA Sbjct: 2 LSVKESQP--VEFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + LD+ I V E+ATFYT + L P G ++VC T PC L G EK+++ N++ K Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKGKYV-LEVCRTGPCCLVGAEKIMDHIENRLGVKEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170 DG SW VEC AC P++ IG + YE+LT E ++++I+ Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPEYTFYENLTVESVDQLIN 165 >gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 163 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE+S + ++YP + +S ++ L AQE+ G++S A +E +A +L + I+V E Sbjct: 2 LSEKSLAEIARERAKYPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 ATFY+ + L PVG R + VCG+ C L G + +++ ++ P +DG + +E Sbjct: 62 AATFYSMYDLQPVG-RHKLCVCGSVSCFLNGSDAILQHLSERLGVSPGETTADGLFTLQE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC +APM+ +G YE+LT E L+ ++ A G+ D +R Sbjct: 121 VECLGACKDAPMLQVGDHYYENLTQESLDALL-AKLRGESDDVR 163 >gi|218672651|ref|ZP_03522320.1| NADH dehydrogenase subunit E [Rhizobium etli GR56] Length = 62 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 49/62 (79%), Positives = 54/62 (87%) Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KIH P Sbjct: 1 MLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKIHAHPFE 60 Query: 127 RN 128 RN Sbjct: 61 RN 62 >gi|322436007|ref|YP_004218219.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX9] gi|321163734|gb|ADW69439.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX9] Length = 169 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 98/164 (59%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E A + +I+ YP R SA++P+L+ AQ++ G+VS AI+ +A LD+ + V Sbjct: 9 FSPEMAAKFDHLITIYPLKR--SALVPMLLYAQDELGFVSEPAIKEIAQRLDLFDLDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CMLRG ++++ C+ K+ DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGYEILDHCKAKLGIGHKQTTPDGQFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP + + D ++DLT ++++I+ ++ G+G ++ Sbjct: 126 VECIGACCWAPAMQVNYDFHDDLTTVKVDDILAEYAAGRGKDVK 169 >gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145] gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145] Length = 174 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L EE QP FS E +E++ RYP + +SA++P+L Q GW+S +A++ VA Sbjct: 2 LKVEETQP--VEFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L ++ I V E+ATFYT + L P G + ++VC T PC L G EKL+ K+ + Sbjct: 60 EYLKISPIEVYEVATFYTMYFLKPQG-KFTLEVCRTGPCCLVGAEKLLNYIGEKLGVEEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDT 179 DG S+ VEC AC P++ IG + YE+LT E ++++ID G + Sbjct: 119 EITPDGLFSYRGVECLAACGFGPVLQIGPEYTFYENLTIESVDKLIDDLKAKAGKS 174 >gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] Length = 149 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 9 LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 68 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+ Sbjct: 69 MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 127 Query: 121 HQKPLHRNSDGTLSWEEVECQG 142 P + DG + VEC G Sbjct: 128 GIGPGETSKDGLFTLSVVECLG 149 >gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823] gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823] Length = 178 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 FS E + V I+ +P + +SA++ +L A+E+ GW+S + VA +L++ I V Sbjct: 17 FSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVPTMNYVAGLLNIQPIEVY 76 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFYT F + G + ++VC T PCML G +++IE NK+ K ++DG + + Sbjct: 77 EVATFYTMFNIEKPG-KVVLEVCRTGPCMLVGSDQIIEHIENKLDIKVGQTSADGMFTLK 135 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC GAC PM+ GK +E LTP +++E++D Sbjct: 136 TAECLGACGYGPMLQCGKHYHEHLTPAKVDELLDTL 171 >gi|256821519|ref|YP_003145482.1| NADH-quinone oxidoreductase subunit E [Kangiella koreensis DSM 16069] gi|256795058|gb|ACV25714.1| NADH-quinone oxidoreductase, E subunit [Kangiella koreensis DSM 16069] Length = 164 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ IS+YP R +SA+IP+L QE+ G +SR A++ A+ L++ +I E Sbjct: 10 LSAESIEKIDLWISKYPTERKRSAIIPVLTIVQEELGHLSREAMDASADYLEIPHIAAYE 69 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+ F+L P G V +C CM+ G E L + ++++ +P + DG +S +E Sbjct: 70 VATFYSMFRLEPGGKHV-VSLCTNVSCMMAGSEALKKWFKDELGIEPGQTSKDGRISLKE 128 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 VEC AC APM+ + K +E+LT E++ ++I Sbjct: 129 VECMAACGGAPMLEVDKQYHENLTVEKMADLI 160 >gi|254496125|ref|ZP_05109024.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12] gi|254354666|gb|EET13302.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12] Length = 167 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 88/147 (59%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ I++YP + QSAV+ L QE+ ++ ++ +A+ L+M I V E+A+FYT + Sbjct: 21 IDHWIAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT V VC CMLR +++ + K+ K DG + VEC GACV Sbjct: 81 EHKPVGTHL-VNVCTNISCMLRDSAGVVDHLQKKLGIKLGETTDDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LTPE ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTPESIDKVLEQY 166 >gi|153872952|ref|ZP_02001700.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS] gi|152070587|gb|EDN68305.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS] Length = 171 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 +S SEES ++ I++YP + QS V+ L Q+ G W++ ++ VA+ LDM Sbjct: 10 ASTLLSEESRAAIDRWIAKYPSDQKQSTVMAALSIVQDANGGWLTTELMDAVADYLDMQP 69 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFY+ ++L PVG + + +C CMLRG E ++ K+ K D Sbjct: 70 IAVYEVATFYSMYELKPVG-QNKLCICTNVSCMLRGSEDIVAHLEQKLGIKLGETTPDKK 128 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + +EVEC GAC APM+ +G++ +E+LT E++++I+ Sbjct: 129 FTLKEVECLGACGGAPMMQVGREYHENLTSEKVDDIL 165 >gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 159 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 9/160 (5%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 S+ FSE S +++ +P R S V+P L Q + G+V + + +A L ++ Sbjct: 2 SYKFSEASEKRFRKMLEVFPDKR--SLVLPCLYILQRENGFVDQDGMAYIAERLGDPISL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130 +V +ATFYT + PVG + H+Q+CGT+ C L G +++ E +C R IH SD Sbjct: 60 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLLGSDEIEEHICKRLGIHMG--QTTSD 116 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 G + EEVEC GAC APMV IG D YE LTPE+++ I+D Sbjct: 117 GKFTLEEVECLGACGYAPMVQIGDDFYEQLTPEKVDRILD 156 >gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74] gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74] Length = 166 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 1/160 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ +F+ E E+I+RYP + +SA++PLL QEQEGW S ++ VA +LD+ I Sbjct: 7 NTVTFTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPI 66 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+A+FYT + L+PVG ++ C T PC L G E + + ++ DG Sbjct: 67 EVYEVASFYTMYHLNPVGKHV-IEYCRTGPCCLMGGEDVYAHLKQRLGIDTGQTTVDGQF 125 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EVEC AC P+ I + Y LT ER++EIID S Sbjct: 126 TLKEVECLAACGMGPVFQIREKYYMHLTNERVDEIIDELS 165 >gi|299138538|ref|ZP_07031717.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX8] gi|298599784|gb|EFI55943.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX8] Length = 169 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+A +++ + YP R SA+IP+L+ AQ++ G+VS + +A LD+ + V Sbjct: 9 FSPETAARFDKLATIYPVKR--SALIPMLLYAQDEVGYVSDEVVAELAKRLDLLELDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CMLRG +L++ C++ + DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGFELLDHCKHTLGIGHKGVTPDGLFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP V + D ++DLTP +++ ++ + G+G ++ Sbjct: 126 VECIGACCWAPAVQVNYDFHDDLTPAKMDAVLADYREGRGKDVK 169 >gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39] gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39] Length = 170 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 9/168 (5%) Query: 6 LAEEEFQPSSFS--FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 L EE QP +FS E+ A E++SRYP + +SA++P+L Q + GW+S A++ Sbjct: 2 LKVEEQQPVAFSAALLEKCA----EIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDK 57 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA L++ I V E+A+FYT + L P G + +++C T PC L G EKL++ + K Sbjct: 58 VAEYLNIQPIEVYEVASFYTMYFLKPQG-KYMLEICRTGPCCLVGAEKLMDHLEQTLGVK 116 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169 DG SW VEC AC P++ IG + YE+L ++L+++I Sbjct: 117 EGEVTPDGLFSWRGVECLAACGYGPVLQIGPEYTFYENLDKQKLDDLI 164 >gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 168 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++ + RYP + QSAV+ L Q + G++S ++ VA + M I V E+A+FY+ F Sbjct: 21 IDDWLRRYPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYEVASFYSMF 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGAC 144 +L PVG R + VC CMLRG ++++E NK+ K DG + E EC AC Sbjct: 81 ELKPVG-RHTIAVCTNISCMLRGSDRIVEHIENKLGIKTGESTPDGKFYIKREEECLAAC 139 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 APM+ + YE LTPER++EI+D Sbjct: 140 CGAPMMQVDHVYYEHLTPERVDEILDGL 167 >gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 331] gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 331] Length = 174 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L + Sbjct: 4 QTEQFILDEAVIKEIDRWLAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ SD Sbjct: 64 PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170 G + + VEC AC APM I Y E+LTPE++ IID Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163 >gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway 5J108-111] gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 334] gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212] gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154] gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway 5J108-111] gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 334] gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212] gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154] Length = 174 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L + Sbjct: 4 QTEQFILDEAVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ SD Sbjct: 64 PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170 G + + VEC AC APM I Y E+LTPE++ IID Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163 >gi|320449686|ref|YP_004201782.1| NADH-quinone oxidoreductase subunit E [Thermus scotoductus SA-01] gi|320149855|gb|ADW21233.1| NADH-quinone oxidoreductase, subunit E [Thermus scotoductus SA-01] Length = 181 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F ++ ++ E ++YPP +SA++PLL R Q++EGW+ IE +A ++ V+ Sbjct: 2 GFFDDKQDFLEETFAKYPPEGRRSAIMPLLRRVQQEEGWIRPERIEEIAQLVGTTATEVM 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +A+FY+ +Q P G R H+QVC T C L G ++L + + P DG S + Sbjct: 62 GVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTETLGIGPGEVTPDGLFSVQ 120 Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 +VEC G+C AP+V + + Y E +T RLE +++ G+ Sbjct: 121 KVECLGSCHTAPVVQVNDEPYVECVTRARLEALLEGLKAGK 161 >gi|52842983|ref|YP_096782.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 167 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166 >gi|289207897|ref|YP_003459963.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. K90mix] gi|288943528|gb|ADC71227.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. K90mix] Length = 176 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 2/144 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 ++RYP + +SAV+ L Q ++G++S A ++ VA L + I V E+ +FY+ ++L P Sbjct: 32 LARYPEDQKRSAVLGALRAVQHEDGYLSTAKMDAVAEYLGLPAIAVYEVGSFYSMYELEP 91 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGACVNAP 148 VG + VC CMLRG E++IE N++ K DG + E EC AC AP Sbjct: 92 VGKHT-IMVCNNISCMLRGSEQIIEHLENRLGIKLGESTPDGKFYLKMEEECLAACCGAP 150 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 M+ + YE+LTPE+++EI+D Sbjct: 151 MMQVDHVYYENLTPEKVDEILDGL 174 >gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b] Length = 167 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166 >gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby] gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy] gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby] gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy] Length = 167 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166 >gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] Length = 170 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 1/137 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 30 LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC+ K+ Sbjct: 90 MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148 Query: 121 HQKPLHRNSDGTLSWEE 137 P DG + E Sbjct: 149 GISPGETTKDGKFTISE 165 >gi|29654735|ref|NP_820427.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 493] gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493] Length = 174 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L + Sbjct: 4 QTEQFILDEVVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ SD Sbjct: 64 PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170 G + + VEC AC APM I Y E+LTPE++ IID Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163 >gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae D-4968] gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150] gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae D-4968] gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150] Length = 167 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ I++YP + QSAV+ L AQE+ G+++ ++ +A+ LDM I V E+A+FYT + Sbjct: 21 IDHWIAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + VG R + VC CML +++ K+ K DG + VEC GACV Sbjct: 81 EHKQVG-RHLINVCTNISCMLCDSAAVVKHLEKKLDIKLGETTDDGRFTLRAVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E LTPE ++++++ + Sbjct: 140 NAPMMQVNKDYHEKLTPESIDKVLEQY 166 >gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens] gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens] Length = 155 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 9 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 69 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LT E ++++++ + Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQY 154 >gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira defluvii] gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira defluvii] Length = 178 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++++SRYP R SA++PLL AQ ++G+++ AA++ +A +L + +V E ATFYT Sbjct: 10 IDDILSRYPVKR--SALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYETATFYTML 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L PVG + H+QVC + C L G + +I K+ KP D + VEC AC Sbjct: 68 NLKPVG-KFHLQVCKSLMCALVGSDTVIGWISAKLGIKPGETTPDRLFTLSIVECLAACG 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 PM+ + D YE LT E+L+ I+ +++ GP Sbjct: 127 TGPMMQVNDDYYERLTEEKLDRILADLRQTGTCSLKTGP 165 >gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris] gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris] Length = 155 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 9 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 69 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 NAPM+ + KD +E+LT E ++++++ + Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQY 154 >gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM 7299] gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM 7299] Length = 158 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F +++E+ +YP + + ++P L QEQEGWVS A+ VA+ + I Sbjct: 2 AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E ATFYT F L P+GT H+++C T CML G L + ++ I +P ++DG Sbjct: 60 EVYEFATFYTMFNLKPIGTY-HIELCKTLSCMLMGANNLKKFIKDTIGIEPGQTSADGKF 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 EVEC GAC APM + +E+ T E L+ +I+ Sbjct: 119 HLSEVECLGACGGAPMFALNGQYHENQTVESLKNLIE 155 >gi|294056099|ref|YP_003549757.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita akajimensis DSM 45221] gi|293615432|gb|ADE55587.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita akajimensis DSM 45221] Length = 166 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E+ +++++ RYP R SA +PL QE +G++S AIE +A L++ I + Sbjct: 1 MNLKPETIEKIDKLVPRYPVMR--SAALPLCHLVQEDQGYLSPEAIEWIAERLELQPINI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 LEI TFY + P G + HV+VC T PC L G + +++ K H + DG ++ Sbjct: 59 LEIVTFYPMLRTEPTG-KYHVRVCRTLPCALSGAYQTCARLEEELNVKVGHTSEDGLVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 E VEC C AP+VM+G+D Y D+ P++ E+ +G+ Sbjct: 118 EYVECHADCGRAPVVMVGEDEYTDIDPDKAAELAAQMKSGE 158 >gi|320107664|ref|YP_004183254.1| NADH-quinone oxidoreductase subunit E [Terriglobus saanensis SP1PR4] gi|319926185|gb|ADV83260.1| NADH-quinone oxidoreductase, E subunit [Terriglobus saanensis SP1PR4] Length = 169 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+A + +++ YP R SA++P+L+ AQ+ G+VS A + +A LD+ + V Sbjct: 9 FSPETAARFDHLVTIYPVRR--SALVPMLLYAQDDIGYVSDAVVAEIAQRLDLLELDVRG 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CML G L++ C+ K+ +DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLVGGYDLLDHCKAKLGIGHKGVTADGLFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP + + D +E++T +++ I++ ++ G+G ++ Sbjct: 126 VECIGACCWAPAIQVNYDFHENVTNIKMDAILEDYAAGRGKDVK 169 >gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21] gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21] Length = 170 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 3/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E++ RYP R +SA++P+L Q + GW+S A++ VA L + I V E+ATFYT F Sbjct: 21 DEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVAAYLRIEPIEVYEVATFYTMFF 80 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G ++VC T PC L G E++++ N++ K DG SW +EC AC Sbjct: 81 LQPQGKYV-LEVCRTGPCCLVGAERIMKHIENRLGVKENEVTPDGLFSWRGIECVAACGM 139 Query: 147 APMVMIG--KDTYEDLTPERLEEIID 170 P++ IG YE+LT E ++++I+ Sbjct: 140 GPVLQIGPTYTYYENLTEESVDQLIE 165 >gi|300113269|ref|YP_003759844.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii C-113] gi|299539206|gb|ADJ27523.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii C-113] Length = 174 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 89/148 (60%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +++ I++YPP + QSA+IP L Q G +++ ++ VA L+M I V E+ATFY+ Sbjct: 27 IDDWIAKYPPEQKQSAIIPALHIVQAANGGYLTDKLLDAVAEYLEMRPISVYEVATFYSM 86 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++L P+G R + VC C LRG ++++ R ++ D + +E EC GAC Sbjct: 87 YELKPIG-RHKISVCTNISCQLRGSDEVVAHLRKRLGIGFGETTPDHRFTVKEAECLGAC 145 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 APM+M G+ +E+LTP ++++I++A Sbjct: 146 GGAPMMMAGRTYHENLTPAKIDQILEAL 173 >gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans serovar Lai str. 56601] gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans serovar Lai str. 56601] Length = 159 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 9/160 (5%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 + FSE S +++ +P R S ++P L Q + G+V + + +A + ++ Sbjct: 2 GYKFSETSEKRFQKMLKAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130 +V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E +C R IH SD Sbjct: 60 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTG--QTTSD 116 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + EEVEC GAC APMV I D YE LTPE++++I+D Sbjct: 117 QKFTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILD 156 >gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 161 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 9/160 (5%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 + FSE S +++ +P R S ++P L Q + G+V + + +A + ++ Sbjct: 4 GYKFSETSEKRFQKMLEAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130 +V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E +C R IH SD Sbjct: 62 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTG--QTTSD 118 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + EEVEC GAC APMV I D YE LTPE++++I+D Sbjct: 119 QKFTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILD 158 >gi|116619256|ref|YP_821412.1| NADH-quinone oxidoreductase subunit E [Candidatus Solibacter usitatus Ellin6076] gi|116222418|gb|ABJ81127.1| NADH-quinone oxidoreductase, E subunit [Candidatus Solibacter usitatus Ellin6076] Length = 160 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++++ YPP R +SA+IP+LM AQ++ G VS I VA + + ++V E+ T+Y+ Sbjct: 13 KLLTSYPPGRQRSAMIPMLMYAQDELGCVSDELIAEVARRIGVTPLQVNEVLTYYSMLHR 72 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G + HVQVC C+L +KL E K+ +DG S EEVEC GAC A Sbjct: 73 KPLG-KYHVQVCTNISCLLHDGDKLYEHTCKKLGITHKEVTADGQFSIEEVECMGACSWA 131 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P + I D + +TPE+L++++D Q Sbjct: 132 PAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160 >gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] Length = 163 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 +YP + +SA++ L AQE+ GW+ IE VA +L + I+ E+ATFYT + L PVG Sbjct: 16 KYPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFEVATFYTMYDLKPVG 75 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VCG+ C L G + ++ + ++ +DG + +EVEC GAC +AP++ Sbjct: 76 -KHKLCVCGSVSCFLNGSDDILAHLQKRLGIGIGETTADGLFTLQEVECLGACKDAPVLH 134 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +G E LTPE ++ +I+ G D Sbjct: 135 LGDRYVEHLTPEGVDALIEQLRGGSSDV 162 >gi|269469172|gb|EEZ80714.1| NADH dehydrogenase I chain E [uncultured SUP05 cluster bacterium] Length = 157 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++YP + SAV+ L Q E + +S AI+ VA+ LDM I E+ATFY + Sbjct: 14 VAKYPEGKQSSAVMEALKIVQAENDNTLSTDAIQAVADYLDMPGIAAAEVATFYENYNHK 73 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 PVG ++ C CML G + LI K+ K +G ++ ++VEC GACV AP Sbjct: 74 PVGKHT-IRFCHNISCMLNGADDLIAYLEKKLKVKTGEVTKNGLINVKKVECLGACVGAP 132 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 M IG YE+LT ++++EI+D Sbjct: 133 MFQIGDQYYENLTKQKIDEIVDGL 156 >gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27] gi|55980057|ref|YP_143354.1| NADH-quinone oxidoreductase subunit 2 [Thermus thermophilus HB8] gi|2499324|sp|Q56221|NQO2_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 2; AltName: Full=NADH dehydrogenase I chain 2; AltName: Full=NDH-1 subunit 2 gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109663|pdb|2FUG|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109671|pdb|2FUG|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109679|pdb|2FUG|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588589|pdb|3I9V|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588597|pdb|3I9V|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588605|pdb|3IAM|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588613|pdb|3IAM|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588621|pdb|3IAS|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588629|pdb|3IAS|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588637|pdb|3IAS|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588645|pdb|3IAS|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863605|pdb|3M9S|2 Chain 2, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863618|pdb|3M9S|B Chain B, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit NQO2 [Thermus thermophilus] gi|46197846|gb|AAS82258.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27] gi|55771470|dbj|BAD69911.1| NADH-quinone oxidoreductase chain 2 [Thermus thermophilus HB8] Length = 181 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+ Sbjct: 2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +A+FY+ +Q P G + H+QVC T C L G E+L + + P DG S + Sbjct: 62 GVASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQ 120 Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 +VEC G+C AP++ + + Y E +T RLE ++ G+ Sbjct: 121 KVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161 >gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 5/150 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ +++YP + QSAVIP L Q+ G W+ R ++ VA L M + V E+ATFY+ Sbjct: 18 IDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVYEVATFYSM 77 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQG 142 F L PVG R V +C C L+G E ++ K+ K D TL EE EC Sbjct: 78 FDLEPVG-RHKVNICTNICCWLKGAEDIVAYTEKKLGIKLGETTPDQRITLKIEE-ECLA 135 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC APM+++ Y DLTPE++++I+DA Sbjct: 136 ACTGAPMMVVDGHYYTDLTPEKIDQILDAL 165 >gi|292493664|ref|YP_003529103.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] gi|291582259|gb|ADE16716.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] Length = 176 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ I++YP + QSAVIP L Q G +++ ++ VA L M I V E+ATFY+ Sbjct: 29 IDHWIAKYPQEQKQSAVIPALHIVQAANGGYLTNELLDEVAEYLQMPPISVYEVATFYSM 88 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+L PVG R + VC C L G ++++ R ++ D + +EVEC GAC Sbjct: 89 FELKPVG-RHKLSVCTNISCQLCGSDQVVAHLRKRLGIGFGETTPDRRFTIKEVECLGAC 147 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 APM+M+G+ +E+LTPE++++I++A Sbjct: 148 GGAPMMMVGQTYHENLTPEKIDQILEAL 175 >gi|218295764|ref|ZP_03496560.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23] gi|218243923|gb|EED10450.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23] Length = 181 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 90/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F ++ ++ ++YPP ++A++PLL R Q++EGW+ +E +A ++ V+ Sbjct: 2 GFFDDKKEFLEATFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERVEEIARLVGTTATEVM 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +A+FY+ +Q P G R H+QVC T C L G ++L + ++ P DG S + Sbjct: 62 GVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTQELGIGPGEVTPDGLFSVQ 120 Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 +VEC G+C AP+V + + Y E +T RL+ +++ G+ Sbjct: 121 KVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKAGK 161 >gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec] gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec] Length = 273 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 5/167 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E++ E+I+RYP R +SA++P+L Q ++G V+ +E A L + + V Sbjct: 3 LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEVSA 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ PVG V VC C+LRG E++ E + DGT++ E Sbjct: 63 VATFYTMYKRRPVGDWL-VSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTEDGTITLEH 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EC AC AP++ + + Y+ + P+ EEI++A G+ RP P Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGE----RPAP 164 >gi|162452500|ref|YP_001614867.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163082|emb|CAN94387.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 165 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ + E ++++RYP Q+A IP+L QEQEGWVS + VA L ++ V Sbjct: 10 FALTAERRTEFEKILARYPNR--QAACIPVLHLCQEQEGWVSERVLRWVAEQLGLSAAHV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT F PVG + V VC T C L G ++++ C ++ DG ++ Sbjct: 68 QGVATFYTLFNKEPVG-KHQVWVCRTLSCALNGADQVLHHCEKRLGIHAGETTKDGKITL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EC +C APM+ + +D +E LT E+++ I+D + Sbjct: 127 RTAECLASCGTAPMMQVDRDYHEGLTLEKVDAILDRLT 164 >gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624] gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624] Length = 312 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 88/190 (46%), Gaps = 54/190 (28%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S + + VA +L+M +RV Sbjct: 151 FKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPMRV 210 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT + L Sbjct: 211 YEVATFYTMYNL------------------------------------------------ 222 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF---STGQGDTIRPGPQIDRISSA 192 EC GACVNAPMV I D YEDLTPE ++ ++ A STG PGP R + Sbjct: 223 ---ECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSAKVPAPGPLSGRQTCE 279 Query: 193 PAGGLTSLLD 202 + GLT+L D Sbjct: 280 NSAGLTNLRD 289 >gi|332883540|gb|EGK03823.1| hypothetical protein HMPREF9456_01890 [Dysgonomonas mossii DSM 22836] Length = 174 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRV 75 + SE +NE++S YP + +SA++P+L Q+ + W+S ++ VA IL++ I V Sbjct: 11 NMSESLMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 70 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY+ F P+ + + C T C LRG E L+E K+ KP DG S Sbjct: 71 YEVVTFYSMFNQKPIA-KYMFEFCRTACCGLRGGENLMEYTCQKLGVKPGEITPDGMFSV 129 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 VEC GAC PM+ +G + +E+L E+++ +I+ G+ Sbjct: 130 VGVECLGACGYGPMLQLGDNYHENLNKEKIDTLIEDCKQGK 170 >gi|320354159|ref|YP_004195498.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] gi|320122661|gb|ADW18207.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] Length = 168 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+F + + RYP +S ++P L QEQEGW+S A+ +A+ + V Sbjct: 14 FAFDAQRDAEFERLAKRYPTR--ESLILPSLWLVQEQEGWISAEAMAYIADRIGTFASMV 71 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E ATFYT + L P G + H+ VC T C L G +++++ + ++ KP ++DG S Sbjct: 72 YEAATFYTMYNLQPKG-KYHICVCRTLSCYLLGKQEIVDYLQQELGIKPGDVSADGEFSL 130 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 EEVEC G C AP+V + + YE++ ++L+E++ Sbjct: 131 EEVECLGHCGTAPVVQVNGEFYENMNVDKLKELL 164 >gi|187930992|ref|YP_001890976.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711901|gb|ACD30198.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 162 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVNKVFYENLTIEKVNQIIDSL 161 >gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E subunit [Candidatus Koribacter versatilis Ellin345] gi|94550390|gb|ABF40314.1| NADH dehydrogenase subunit E [Candidatus Koribacter versatilis Ellin345] Length = 160 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS+ W E YP R S ++P L+ Q++ G++S AI +AN +++ + V Sbjct: 3 FSDNLEKWFAEAQGHYPTKR--SPLVPFLLYVQDEVGYLSDEAIVEIANRVELTPLEVRN 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P+G + +VQVC C+ RG E + E C+ + DG S EE Sbjct: 61 VISYYSMLRTKPIG-KYNVQVCTNICCLQRGGEDIFEHCKKTLGIGHKQTTPDGLFSLEE 119 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VEC GAC AP V + D +E+LTPE ++ +I+++ Sbjct: 120 VECIGACSWAPAVQVNYDFHENLTPETMDAVIESY 154 >gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1] gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1] Length = 253 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E A +I RYP SR SA++PLL Q ++G+++ A I A L + + V + Sbjct: 29 TERLAADAATIIGRYPQSR--SALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVTAV 86 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY+ ++ P G V VC T C + G + ++E + + P +DGT++ E V Sbjct: 87 ATFYSMYRREPTGEYL-VGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLEHV 145 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC AC AP+VM+ D +++ TP + +++D+ +G+ T Sbjct: 146 ECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPT 186 >gi|288917187|ref|ZP_06411556.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f] gi|288351378|gb|EFC85586.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f] Length = 242 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E++ E+I+RYP R +SA++P+L Q +EG V+ ++ A L + + V Sbjct: 3 LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEEGAVTAEGVDFCAEQLGLTHAEVGA 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ PVG V VC C+LRG E + + + DGT++ E Sbjct: 63 VATFYTMYKRRPVGDWL-VSVCTNLSCLLRGGEDVYKRLSANLGVGHDQTTEDGTITLEH 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EC AC AP++ + + Y+ +TP+ E I+DA G+ RP P Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVTPDSAEGIVDALRRGE----RPAP 164 >gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 168 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 8/168 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ATFYT F Sbjct: 7 IEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P+G R H+Q+C CML G E L+ + + DG + VEC GAC Sbjct: 65 HTEPIG-RFHLQLCDNVSCMLCGSEALLTHLEKTLGIRKGETTPDGAFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 AP++ +G D + +L RL+ ++++F + T ++R ++AP Sbjct: 124 MAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166 >gi|254874053|ref|ZP_05246763.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254840052|gb|EET18488.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 156 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78 +++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ Sbjct: 3 KDTLYHIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +EV Sbjct: 63 ATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 122 ECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 155 >gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2] gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2] Length = 163 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 3/143 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++EVI+ YP R SA +PLL QE G++S A+E +A+ L + I VLE+ TFY F Sbjct: 11 IDEVITHYPVKR--SATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHVLEVVTFYPMF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P+G R H++VC T C L G K+ E + + + DG ++ E VEC +C Sbjct: 69 RRKPIGRR-HIKVCRTLSCALMGGYKVCETMQKEFDTHLNEVSPDGEVTVEFVECLASCG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168 AP+VMI + +E++TP R E+ Sbjct: 128 TAPVVMIDETLHENVTPARAREL 150 >gi|16263283|ref|NP_436076.1| NuoE2 NADH I chain E [Sinorhizobium meliloti 1021] gi|307304398|ref|ZP_07584149.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] gi|307318105|ref|ZP_07597541.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|17380452|sp|P56910|NUOE2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 2; AltName: Full=NADH dehydrogenase I subunit E 2; AltName: Full=NDH-1 subunit E 2 gi|14523960|gb|AAK65488.1| NuoE2 NADH:quinone oxidoreductase (chain E) [Sinorhizobium meliloti 1021] gi|306896146|gb|EFN26896.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|306902600|gb|EFN33194.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] Length = 168 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 8/168 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ATFYT F Sbjct: 7 IEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P+G R H+Q+C CML G E L+ + + DG + VEC GAC Sbjct: 65 HTEPIG-RFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 AP++ +G D + +L RL+ ++++F + T ++R ++AP Sbjct: 124 MAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166 >gi|56707215|ref|YP_169111.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89257086|ref|YP_514448.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica LVS] gi|110669685|ref|YP_666242.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis FSC198] gi|115315443|ref|YP_764166.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica OSU18] gi|134301250|ref|YP_001121218.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156503300|ref|YP_001429365.1| NADH dehydrogenase I, subunit E [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009478|ref|ZP_02274409.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella tularensis subsp. holarctica FSC200] gi|254368322|ref|ZP_04984340.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica 257] gi|254368969|ref|ZP_04984982.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp. holarctica FSC022] gi|254371431|ref|ZP_04987432.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|290952993|ref|ZP_06557614.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313813|ref|ZP_06804386.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica URFT1] gi|54114135|gb|AAV29701.1| NT02FT1740 [synthetic construct] gi|56603707|emb|CAG44668.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144917|emb|CAJ80265.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica LVS] gi|110320018|emb|CAL08051.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130342|gb|ABI83529.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134049027|gb|ABO46098.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp. tularensis WY96-3418] gi|134254130|gb|EBA53224.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica 257] gi|151569670|gb|EDN35324.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|156253903|gb|ABU62409.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121890|gb|EDO66060.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp. holarctica FSC022] gi|282158323|gb|ADA77714.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|150375770|ref|YP_001312366.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium medicae WSM419] gi|150030317|gb|ABR62433.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae WSM419] Length = 169 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ TFYT F P+ Sbjct: 12 ARYPDRR--SAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELVTFYTLFHTEPI 69 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R H+Q+C CML G E L++ + K +DG + VEC GAC AP++ Sbjct: 70 G-RFHLQLCDNVSCMLCGSEALLKHLETTLRIKKGETTADGVFTLSTVECLGACEMAPVM 128 Query: 151 MIGKDTYEDLTPERLEEIIDAFSTGQ 176 +G D + +L RLE ++++F + Sbjct: 129 QVGDDYHGNLDNARLEAMLESFRAAE 154 >gi|118498237|ref|YP_899287.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. novicida U112] gi|194324421|ref|ZP_03058194.1| NADH-quinone oxidoreductase, e subunit family [Francisella tularensis subsp. novicida FTE] gi|118424143|gb|ABK90533.1| NADH dehydrogenase I, E subunit [Francisella novicida U112] gi|194321486|gb|EDX18971.1| NADH-quinone oxidoreductase, e subunit family [Francisella tularensis subsp. novicida FTE] Length = 162 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|114777365|ref|ZP_01452362.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1] gi|114552147|gb|EAU54649.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1] Length = 170 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S FSE + E++ RYP + QSA++P+L AQE G++S + VA++L + + Sbjct: 8 NSHRFSEARLAEIAELVKRYPGA--QSALMPVLYMAQEDFGYLSMDVQQHVADVLGLRLM 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V E+ TFYT F+ P GT ++VC CML G +L+ + K DG Sbjct: 66 QVREVVTFYTMFREKPCGTYL-LEVCTNAGCMLNGANELVAHMCETLGIKVGETTDDGLF 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + EVEC GAC AP+V + +E +TPE ++ +I Sbjct: 125 TVAEVECAGACGGAPVVQVNHTYHEKVTPETMDALI 160 >gi|62262937|gb|AAX78114.1| unknown protein [synthetic construct] Length = 197 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 41 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 100 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 101 YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 159 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 160 CGSPMLEVDKVFYENLTIEKVNQIIDSL 187 >gi|208780264|ref|ZP_03247606.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida FTG] gi|254375045|ref|ZP_04990525.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548] gi|151572763|gb|EDN38417.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548] gi|208743913|gb|EDZ90215.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida FTG] Length = 162 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLGIKPGETTEDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|332184792|gb|AEE27046.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida 3523] Length = 162 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + L PVG R + VC CML G +++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGQTTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|284106849|ref|ZP_06386292.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830028|gb|EFC34304.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Poribacteria sp. WGA-A3] Length = 155 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 1/143 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++PLL AQ +EG+VS+AAI +A ILD+ +V E ATFYT L P+G + H+QVC + Sbjct: 1 MLPLLNLAQREEGYVSQAAIREIAGILDLTPPQVFETATFYTMLNLKPIG-KFHIQVCRS 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C L G + LIE R + D + VEC G+C PM+ I D YE LT Sbjct: 60 LMCALVGADPLIEWLRTHLGIGVGQTTDDKLFTLSAVECLGSCGTGPMMQINDDYYERLT 119 Query: 162 PERLEEIIDAFSTGQGDTIRPGP 184 E++ I+ ++ GP Sbjct: 120 EEKVGLIVRDLRETGDSAMKSGP 142 >gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX] gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca YX] Length = 239 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 3/158 (1%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP +R SA++PLL Q +EG+VS I A L + V +ATFYT ++ Sbjct: 25 EIISRYPKAR--SALLPLLHLVQSEEGYVSNDGIAFCAEQLGLTTAEVTAVATFYTMYKR 82 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 PVG HV VC C + G +++ + + + DG +S E VEC AC A Sbjct: 83 RPVG-EYHVGVCTNPLCAVMGGDEIYSALKEHLGVENDGVTEDGKISLEHVECNAACDFA 141 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 P+VMI + +++ TPE +++I+D G+ GP Sbjct: 142 PVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTRGPN 179 >gi|50843382|ref|YP_056609.1| NADH dehydrogenase subunit E [Propionibacterium acnes KPA171202] gi|289425625|ref|ZP_06427397.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK187] gi|289426980|ref|ZP_06428699.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes J165] gi|295131456|ref|YP_003582119.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK137] gi|50840984|gb|AAT83651.1| NADH dehydrogenase I chain E [Propionibacterium acnes KPA171202] gi|289153926|gb|EFD02619.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK187] gi|289159802|gb|EFD07987.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes J165] gi|291375165|gb|ADD99019.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK137] gi|313763288|gb|EFS34652.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA1] gi|313773334|gb|EFS39300.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL074PA1] gi|313793604|gb|EFS41644.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA1] gi|313802885|gb|EFS44098.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA2] gi|313806331|gb|EFS44847.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA2] gi|313810763|gb|EFS48477.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA1] gi|313814972|gb|EFS52686.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA1] gi|313819442|gb|EFS57156.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA2] gi|313821248|gb|EFS58962.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA1] gi|313822297|gb|EFS60011.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA2] gi|313826145|gb|EFS63859.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA1] gi|313829366|gb|EFS67080.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA2] gi|313831074|gb|EFS68788.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL007PA1] gi|313833204|gb|EFS70918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL056PA1] gi|313838153|gb|EFS75867.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL086PA1] gi|314916742|gb|EFS80573.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA4] gi|314919132|gb|EFS82963.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA1] gi|314921212|gb|EFS85043.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA3] gi|314925994|gb|EFS89825.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA3] gi|314930360|gb|EFS94191.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL067PA1] gi|314956143|gb|EFT00539.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA1] gi|314959676|gb|EFT03778.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA1] gi|314962250|gb|EFT06351.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA2] gi|314963236|gb|EFT07336.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA1] gi|314969779|gb|EFT13877.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA1] gi|314973942|gb|EFT18038.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA1] gi|314976870|gb|EFT20965.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL045PA1] gi|314979335|gb|EFT23429.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA2] gi|314984992|gb|EFT29084.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA1] gi|314986333|gb|EFT30425.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA2] gi|314988570|gb|EFT32661.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA3] gi|315079687|gb|EFT51675.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA2] gi|315081015|gb|EFT52991.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL078PA1] gi|315083922|gb|EFT55898.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA2] gi|315085059|gb|EFT57035.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA3] gi|315089488|gb|EFT61464.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA1] gi|315097693|gb|EFT69669.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL038PA1] gi|315098100|gb|EFT70076.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA2] gi|315102682|gb|EFT74658.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA1] gi|315107938|gb|EFT79914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA1] gi|315108824|gb|EFT80800.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA2] gi|327325713|gb|EGE67510.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL096PA3] gi|327330839|gb|EGE72584.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL096PA2] gi|327442868|gb|EGE89522.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA2] gi|327445260|gb|EGE91914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA1] gi|327447754|gb|EGE94408.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA2] gi|327451635|gb|EGE98289.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA3] gi|327452288|gb|EGE98942.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA2] gi|327452505|gb|EGE99159.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL092PA1] gi|328752121|gb|EGF65737.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA2] gi|328755065|gb|EGF68681.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL020PA1] gi|328757013|gb|EGF70629.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA1] gi|328761549|gb|EGF75067.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL099PA1] gi|332676325|gb|AEE73141.1| NADH-quinone oxidoreductase subunit E [Propionibacterium acnes 266] Length = 261 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + H+ VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E VEC AC AP++M+ + +++TP R EEI+D+ + Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188 >gi|282855270|ref|ZP_06264602.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139] gi|282581858|gb|EFB87243.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139] gi|314923990|gb|EFS87821.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL001PA1] gi|314965054|gb|EFT09153.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA2] gi|314983074|gb|EFT27166.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA3] gi|315090607|gb|EFT62583.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA4] gi|315093906|gb|EFT65882.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL060PA1] gi|315104125|gb|EFT76101.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA2] gi|327325782|gb|EGE67574.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL103PA1] Length = 261 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + H+ VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E VEC AC AP++M+ + +++TP R EEI+D+ + Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188 >gi|332830192|gb|EGK02820.1| hypothetical protein HMPREF9455_01070 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRV 75 + S+E +NE++S YP + +SA++P+L Q+ + W+S ++ VA IL++ I V Sbjct: 12 NMSDELMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 71 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFYT F PV + + C T C LRG E L++ K+ K DG S Sbjct: 72 YEVVTFYTMFNQKPVA-KYMFEFCRTACCGLRGGEDLMDYTCQKLGVKQGEITPDGMFSV 130 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 VEC GAC PM+ +G + +E+LT ++++ +I+ G+ Sbjct: 131 VGVECLGACGYGPMLQLGDNYHENLTKDKIDTLIEDCKEGK 171 >gi|153007186|ref|YP_001381511.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter sp. Fw109-5] gi|152030759|gb|ABS28527.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. Fw109-5] Length = 188 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + EV+ RYPP R +A++P L QE G+++ A + A+ L + R E+ATFY F Sbjct: 42 LAEVLRRYPPDRKAAAMLPALRIGQEIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMF 101 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P+G R V+VC C L G ++L E ++K + DG ++ EVEC GAC Sbjct: 102 NTRPIG-RHLVEVCTNVSCCLTGGDRLFEYLKHKYGVTNGGTSQDGRVTLREVECLGACG 160 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP +++ ++ YE L P+++EEI+ Sbjct: 161 TAPAMLVDEEMYERLDPKKVEEIL 184 >gi|78485166|ref|YP_391091.1| NADH-quinone oxidoreductase, E subunit [Thiomicrospira crunogena XCL-2] gi|78363452|gb|ABB41417.1| NADH dehydrogenase I chain E [Thiomicrospira crunogena XCL-2] Length = 164 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++RYP + QSAV+ L QE G ++ ++ +A+ L+M I V E+ATFY ++ Sbjct: 21 VARYPDDQKQSAVMAALRIVQETNGGHLTTELMDQIADYLEMPPIAVYEVATFYGNYEHE 80 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 PVG + + +C + CMLRG ++++ K++ K DG S ++VEC GAC AP Sbjct: 81 PVG-KHKICLCNSISCMLRGNDEILAHMEKKLNIKVGEVTEDGRFSIKKVECLGACGGAP 139 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 M+ IGK YE+LT ++EI+D Sbjct: 140 MIQIGKTYYENLTETSVDEILDGL 163 >gi|77166019|ref|YP_344544.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus oceani ATCC 19707] gi|254436398|ref|ZP_05049904.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] gi|76884333|gb|ABA59014.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707] gi|207088088|gb|EDZ65361.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] Length = 175 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 2/144 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 I++YPP R QSAVIP L Q G+++ ++ VA L+M I V E+ATFY+ ++L Sbjct: 32 IAKYPPERKQSAVIPALHIVQAVNGGYLTDKLLDAVAEYLEMRPISVYEVATFYSMYELK 91 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P+G R + VC C L G ++++ + ++ D + +E EC GAC AP Sbjct: 92 PIG-RHKISVCTNISCQLSGSDEVVAHLQKRLGIGFGETTPDHRFTVKEAECLGACGGAP 150 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 M+M G +E+LT E++++I++A Sbjct: 151 MMMAGHTYHENLTSEKIDQILEAL 174 >gi|313813678|gb|EFS51392.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA1] gi|327333126|gb|EGE74853.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL097PA1] Length = 261 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + H+ VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E VEC AC AP++M+ + +++TP R EEI+D+ + Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188 >gi|254373578|ref|ZP_04989064.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|151571302|gb|EDN36956.1| NADH dehydrogenase I [Francisella novicida GA99-3549] Length = 162 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++L PVG R + +C CML G ++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|241667719|ref|ZP_04755297.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876263|ref|ZP_05248973.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842284|gb|EET20698.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 162 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++L PVG R + +C CML G ++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YELKPVG-RHKLNLCTNVSCMLNGAYDILTHIEKKLGIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|332678973|gb|AEE88102.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida Fx1] Length = 162 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++L PVG R + +C CML G ++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca ATCC 27029] gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5] gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca ATCC 27029] gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5] Length = 364 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SFSE + E+I+RYP R +SA++PLL Q +EG+VS A +E A +L + +V Sbjct: 1 MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ P G V VC T C + G +K+ + + +DG ++ Sbjct: 61 GAVATFYTMYKRKPTGDYL-VSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETTADGKITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 E EC AC P++ + D ++++ P+ ++++ G Sbjct: 120 EHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAG 159 >gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91] gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91] Length = 162 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 SS S E+ ++ I++YP + QSAV+ L AQ+++GW++ ++ +AN L+M I Sbjct: 2 SSLMLSMEALKKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAI 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + L P+G + + VC PC L G + ++ + K+ DG Sbjct: 62 AVYEVATFYNMYNLKPIG-KYKLTVCTNLPCALSGSNQTVDYLKKKLDIGFNETTVDGLF 120 Query: 134 SWEEVECQGACVNAPMVMIGKD-----TYEDLTPERLEEI 168 + +E EC GAC +AP++++ ED + LEE+ Sbjct: 121 TLKEGECMGACGDAPVLLVNNKRMCSFMTEDQIDKLLEEL 160 >gi|167627157|ref|YP_001677657.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597158|gb|ABZ87156.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 162 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ATFY Sbjct: 15 IDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTNDLQTALAEYLQVSKVDVYEVATFYCM 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++L PVG R + +C CML G ++ K+ KP DG ++ +EVECQGAC Sbjct: 75 YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +PM+ + K YE+LT E++ +IID+ Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|297565710|ref|YP_003684682.1| NADH-quinone oxidoreductase subunit E [Meiothermus silvanus DSM 9946] gi|296850159|gb|ADH63174.1| NADH-quinone oxidoreductase, E subunit [Meiothermus silvanus DSM 9946] Length = 183 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV S+YP R +A++PLL R Q+ EGW+S E +A+I+ V Sbjct: 1 MGFFDDKQEWLAEVFSQYPERR--AALMPLLRRVQQDEGWISPERQEEIAHIVGTTATEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FYT FQ P G + H+QVC T C + G ++L + + P +DG S Sbjct: 59 AGVMSFYTYFQSLPTG-KHHIQVCATLSCAIGGADELWDELVQTLGILPGEVTADGLFSI 117 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP+V I + Y E +T RL+ ++ G+ Sbjct: 118 QKVECLGSCHTAPVVQINDEPYVECVTKARLQALLQGLREGK 159 >gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152] gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM 10152] Length = 245 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 5/171 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P S E A+ E+I RYP R SA++PLL Q ++G+V+ IE A L + Sbjct: 22 EPYPPSVRERLALDAKEIIGRYPQPR--SALLPLLHLVQSEDGYVTATGIEFCAEQLGLT 79 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+ F+ +P G HV VC T C + G + ++ + +DG Sbjct: 80 GAEVTAVATFYSMFRRTPTGDY-HVGVCTNTLCAVLGGDAILASLTEHLGIAAGETTADG 138 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++ E +EC AC AP+VM+ + +++ TPE ++DA G+ +RP Sbjct: 139 AITVEHIECNAACDFAPVVMVNWEFFDNQTPESARALVDALRAGE--PVRP 187 >gi|118602279|ref|YP_903494.1| NADH-quinone oxidoreductase, E subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567218|gb|ABL02023.1| NADH dehydrogenase subunit E [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 157 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 2/142 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 I++YP R SAV+ L Q E E +S I+ VA+ LDM I V E+ATFY + Sbjct: 14 IAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVATFYENYNHK 73 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 VG ++ C CML G + LI NK+ + DG +S ++VEC GACV AP Sbjct: 74 KVGKYV-IRFCHNISCMLNGADDLIAYLENKLGVQTDEVTPDGLISVKKVECLGACVGAP 132 Query: 149 MVMIGKDTYEDLTPERLEEIID 170 M I + +E+LT +++++I+D Sbjct: 133 MFQINDEYFENLTFDKIDKIVD 154 >gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205] gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola CNS-205] Length = 305 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 1/172 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I A +L + +V Sbjct: 4 FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ P G V VC T C + G +++ + + +DGT++ E Sbjct: 64 VASFYTMYKRRPTGDWL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTADGTITLEH 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 EC AC P++ + D ++++ P+ ++D G T G ++ R+ Sbjct: 123 AECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTPSRGARLCRL 174 >gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC 25259] gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC 25259] Length = 168 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GW+ I+ VA+ L M I E Sbjct: 13 LSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYLQMPPIAAYE 72 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC LRG ++ + K+ DG + +E Sbjct: 73 VATFYNMYDTQPVG-RHKITVCTNLPCALRGAGEIAAHLKEKLGIGFGETTEDGRYTLKE 131 Query: 138 VECQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAF 172 EC GAC +APM + T + LTPE+++E++D Sbjct: 132 GECMGACGDAPMCLHNNHTMHTHLTPEKVDELLDKL 167 >gi|313679589|ref|YP_004057328.1| NADH dehydrogenase subunit e [Oceanithermus profundus DSM 14977] gi|313152304|gb|ADR36155.1| NADH dehydrogenase subunit E [Oceanithermus profundus DSM 14977] Length = 190 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV ++YP R +SA++PLL R Q+ EG+V ++ +A ++ V Sbjct: 1 MGFFDDKQEWLAEVFAQYPEDRRRSALMPLLRRVQQDEGYVDFERMKEIAELVGTTATEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ +Q P G + H+QVC T C L G ++L ++ P DG S Sbjct: 61 AGVMSFYSYYQGLPTG-KYHIQVCRTLSCKLAGADELWHTLTERLGILPGEVTPDGRFSL 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 + VEC G+C P++ +G + Y E +T RLE +++ Sbjct: 120 QAVECLGSCHTGPVIQVGDEPYVERVTKARLEALLEGL 157 >gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase, E subunit [Flavobacterium johnsoniae UW101] gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101] Length = 176 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 2/145 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +NE+IS YP + +SA++P+L Q+ W+S + VA IL + I V E+ TFYT Sbjct: 20 INELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAEILQIKPIEVYEVVTFYTM 79 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P+G + + C T+ C LRG E L++ K+ K DG + VEC GAC Sbjct: 80 FNQKPIG-KYMFEFCQTSCCCLRGAEDLMDYTSEKLGIKMGETTPDGMFTIAGVECLGAC 138 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 APM+ +G E LT E++++II Sbjct: 139 GYAPMMQLGDFYKEKLTEEKIDQII 163 >gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 157 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + ES ++ I++YP + QSAV+ L AQE++GW+S AIE VA L MA I E Sbjct: 2 LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG + V VC PCML G E + K+ DG ++ +E Sbjct: 62 VASFYNMYDLKPVG-KYKVSVCTNLPCMLTGGVDAGEYLKQKLGIDYNETTPDGLITLKE 120 Query: 138 VECQGACVNAP-MVMIGKDTYEDLTPERLEEII 169 EC GAC +AP M++ + + PE++++++ Sbjct: 121 GECMGACGDAPVMIVNNRRMCSWMNPEQIDKLL 153 >gi|148244393|ref|YP_001219087.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii HA] gi|146326220|dbj|BAF61363.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii HA] Length = 157 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 2/142 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 I++YP R SAV+ L Q E + +S + I+ VA+ LDM I V E+ATFY + Sbjct: 14 IAKYPKDRQSSAVMQALKIVQAENKNILSASIIQEVADYLDMPDIVVQEVATFYENYNYK 73 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 VG ++ C CML G + LI+ NK+ K DG +S ++VEC GACV AP Sbjct: 74 KVGKYV-IRFCHNISCMLNGADDLIKHLENKLGVKTGEVTLDGLISVKKVECLGACVGAP 132 Query: 149 MVMIGKDTYEDLTPERLEEIID 170 M I + +E+LT +++++I+D Sbjct: 133 MFQINEKYFENLTIDKIDKIVD 154 >gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 114 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA++L + +IRV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ Sbjct: 4 VADMLHIPHIRVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGIN 62 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D + +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 63 IGETTKDNLFTLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 112 >gi|313836204|gb|EFS73918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA2] gi|314927639|gb|EFS91470.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL044PA1] gi|314971362|gb|EFT15460.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA3] gi|328906299|gb|EGG26074.1| NADH dehydrogenase subunit E [Propionibacterium sp. P08] Length = 260 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + + ++ SRYP R SA++P+L Q +G VS IE A +L + + Sbjct: 33 STNIDEHTIEEMRQIASRYPDPR--SALLPILHLVQSVDGRVSPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + H+ VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGETTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E VEC AC AP++M+ + +++TP R EEI+DA + Sbjct: 150 LEGVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDALA 188 >gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440] gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica CNB-440] Length = 317 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 1/172 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I A +L + +V Sbjct: 16 FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 75 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ P G V VC T C + G +++ + + +DGT++ E Sbjct: 76 VASFYTMYKRRPTGDWL-VSVCTNTMCNVLGGQEVYDALVEHLGVGHEETTADGTVTLEH 134 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 EC AC P++ + D ++++ P+ ++D G T G ++ R+ Sbjct: 135 AECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRPTSSRGARLCRL 186 >gi|325067541|ref|ZP_08126214.1| NADH dehydrogenase subunit E [Actinomyces oris K20] Length = 256 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 1/160 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT HV VC C + G +++ + + DGT+S E VEC AC Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + +++ TP+ +I A G+ GP+ Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206 >gi|326772148|ref|ZP_08231433.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505] gi|326638281|gb|EGE39182.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505] Length = 256 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 1/160 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT HV VC C + G +++ + + DGT+S E VEC AC Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + +++ TP+ +I A G+ GP+ Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206 >gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)] gi|256785937|ref|ZP_05524368.1| NADH dehydrogenase subunit E [Streptomyces lividans TK24] gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24] gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24] Length = 290 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++PLL Q +EG V+R ++ A++LD+ V +ATFYT ++ Sbjct: 36 EIIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAEVTAVATFYTMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E ++ + DG ++ E +EC AC A Sbjct: 94 RPSGDY-QVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTLEHIECNAACDFA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP ++ ++D G+ Sbjct: 153 PVVMVNWEFFDNQTPASVKALVDDLRAGR 181 >gi|320532545|ref|ZP_08033354.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str. F0337] gi|320135239|gb|EFW27378.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str. F0337] Length = 256 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 1/160 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT HV VC C + G +++ + DGT+S E VEC AC Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERVECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + +++ TP+ +I A G+ GP+ Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVVPTRGPE 206 >gi|116750129|ref|YP_846816.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699193|gb|ABK18381.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 151 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + + +R+ R + A+IP+L Q + G++ A++ A + + V ++TFY QF Sbjct: 5 LQRIFTRH--DRKRDALIPVLQDIQGEFGYLPPHAMQAAARHCRTSAVEVYGVSTFYAQF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + SPVG R V VC T C + G +++E C++++ +P DG + E V C GAC Sbjct: 63 KFSPVG-RHTVTVCQGTACHVMGGHRILEECKSQLGVQPGQTTPDGMFTLETVACIGACA 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P V++ KDTY + PER+ EI++A ++ Sbjct: 122 LSPAVVVDKDTYGRMKPERITEILNAATS 150 >gi|326329614|ref|ZP_08195936.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1] gi|325952610|gb|EGD44628.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1] Length = 213 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S + E+ + E+ +RYP +R S ++P+L Q EG V+ I+ A++L + V Sbjct: 1 MSLAPETFDELREIAARYPQAR--SGLLPMLHLVQSVEGRVTPEGIQACADVLGLTPAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG R HV VC T C + G +++ R K+ +DG ++ Sbjct: 59 SGVATFYTMYKRHPVG-RHHVGVCTNTLCAVMGGDEIFACLREKLEVGNDETTADGAITL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 E +EC AC AP+VM+ + +++ TPE +++D G+ Sbjct: 118 EHIECNAACDYAPVVMVNWEFFDNQTPESAAQLVDDLREGR 158 >gi|194366600|ref|YP_002029210.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia R551-3] gi|194349404|gb|ACF52527.1| NADH-quinone oxidoreductase, E subunit [Stenotrophomonas maltophilia R551-3] Length = 175 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ EGW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|57641549|ref|YP_184027.1| NADH dehydrogenase subunit E [Thermococcus kodakarensis KOD1] gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus kodakarensis KOD1] Length = 154 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 3/152 (1%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 + I YPP S++IPLL R QE+ G++ R +E +AN L + RV +ATFY QF+ Sbjct: 6 DYIRSYPPE--PSSLIPLLQRTQERFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G + V+VC T C + G + + + ++ + DG ++ E V C G C A Sbjct: 64 EPLG-KYVVKVCHGTACHVNGAVNIAQALKEELGIEEGQTTEDGLVTLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 P++MI + + LTP+++ +++ G+ D Sbjct: 123 PVIMINEKVFGKLTPDKVRKLVKQLKEGKLDV 154 >gi|117927480|ref|YP_872031.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B] gi|117647943|gb|ABK52045.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B] Length = 269 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 +V++RYP R +SA++PLL Q ++G+VS I +VA+IL + V +ATFYT ++ Sbjct: 58 QVLARYP--RPRSALMPLLYLVQAEQGYVSADGIRLVADILGLTTAEVTAVATFYTMYRR 115 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R V VC T C + G + + + R + + DG ++ E +EC AC A Sbjct: 116 RPCG-RYLVGVCTNTLCAILGGDAIFDALREHLGIENGETTPDGAVTLEHIECNAACDYA 174 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + +++ TP E++D G Sbjct: 175 PVVMVNWEFFDNQTPASARELVDRLRAG 202 >gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus KT] gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT] Length = 159 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S ES ++ +++YPP Q+AV+ L AQ ++GW+S+ I VA+ L + I Sbjct: 1 MSLSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAA 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 LE+ATFY ++L PVG + + VC CMLR +++ + ++ D + Sbjct: 61 LEVATFYNMYELEPVG-KYKITVCTNISCMLRDSAEIVAHLQKRLGIGFNETTPDNRYTL 119 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 E EC G C AP++ I + +E LTPE++++I++ Sbjct: 120 REGECMGCCGGAPLLHINNTEMHEFLTPEKVDQILEGL 157 >gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora setae KM-6054] Length = 246 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP SR SA++PLL Q ++G V+ I A L++ V +ATFYT ++ Sbjct: 30 ELISRYPQSR--SALLPLLHLVQAEDGCVTPTGIRFCAEQLELTTAEVTAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G HV VC T C + G +++ + + DG++S E +EC AC A Sbjct: 88 RPAG-EYHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDGSVSIERIECNAACDYA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+VM+ + +++ TPE +E++D GQ +RP Sbjct: 147 PVVMVNWEFFDNQTPESAKELVDRLRAGQ--EVRP 179 >gi|319787439|ref|YP_004146914.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas suwonensis 11-1] gi|317465951|gb|ADV27683.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas suwonensis 11-1] Length = 175 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+ + ++ ++++PP R +SAV+ L AQEQ +GW+S I VA LD+ + Sbjct: 19 LSDATRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLSDELIAAVAKYLDIPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F+ PVG R +V C C L G + L+ K+ K +DG + + Sbjct: 79 EVATFYSMFETQPVG-RNNVAFCTNISCWLNGAQDLVAHAEKKLGCKLGESTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC AP+V+I +E LT E+++E++D Sbjct: 138 REEECVAACCGAPVVVINGHYHEKLTTEKVDELLDGL 174 >gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK] gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK] Length = 287 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 3/148 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +ATFY+ ++ + Sbjct: 37 IIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVATFYSMYRRT 94 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + ++E + P +DG ++ E VEC AC AP Sbjct: 95 PTGEYL-VGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAACDFAP 153 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +VM+ D +++ TP E++D +GQ Sbjct: 154 VVMVNWDFFDNQTPASARELVDGLRSGQ 181 >gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1] gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1] Length = 279 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG+VSR I A +L + V +ATFYT ++ Sbjct: 61 EVIARYPDSR--SALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTTAEVTAVATFYTMYRR 118 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 119 GPSGDY-QVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGKVTLEHIECNAACDYA 177 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP+ + ++D G+ Sbjct: 178 PVVMVNWEFFDNQTPQSAKAMVDDLLAGR 206 >gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila UNI-1] gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1] Length = 173 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++++YP +SAV+PLL AQ +EG+V R A+E +A IL+M+ V I FYT + Sbjct: 12 VKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVASIVGFYTLY 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G R H+QVC PC LRG +K +E ++ + DG + E V+C AC Sbjct: 72 YDQPAG-RYHIQVCTDLPCALRGADKFLEELCQRLGIREGETTPDGLFTVEAVKCLAACH 130 Query: 146 NAPMVMIGKD 155 AP+ + D Sbjct: 131 RAPVFQVQGD 140 >gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 165 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVI-PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 FSE ++ + S++P + +SA+I LL+ + G++S I +AN LD+ I V Sbjct: 7 FSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDIQKIDVY 66 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW- 135 E+ATFY+ F L PVG + + VC CMLR + ++ ++ K D Sbjct: 67 EVATFYSMFNLKPVG-KNTISVCTNVSCMLRNSDGIVNHIEKRLKIKIGESTKDNKFYLK 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 +E+EC AC APM+ + YE+LT E++++I+D Sbjct: 126 DEMECLAACNGAPMMQVNHINYENLTFEKVDKILD 160 >gi|328950035|ref|YP_004367370.1| NADH-quinone oxidoreductase, E subunit [Marinithermus hydrothermalis DSM 14884] gi|328450359|gb|AEB11260.1| NADH-quinone oxidoreductase, E subunit [Marinithermus hydrothermalis DSM 14884] Length = 200 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV +YPP +SA++PLL R Q +EG+VS A I +A ++ V Sbjct: 1 MGFFDDKQDWLEEVFRQYPPEGRRSAIMPLLRRVQTEEGYVSEARIREIAELVGTTPTEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ + P G + H+QVC T C L G ++L + + P DG S Sbjct: 61 KGVMSFYSYYHELPTG-KYHLQVCATLSCALAGADELWDYLVETLGILPGEVTPDGRFSI 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST-----------GQGDTIRP 182 ++VEC G+C AP+V + + Y E +T RL+ +++ G G +RP Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKADRPLEEIELPEGCGHVVRP 178 >gi|317123849|ref|YP_004097961.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043] gi|315587937|gb|ADU47234.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043] Length = 255 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 5/185 (2%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 L E +P + E+ + EVI+RYP R SA++PLL Q +G+V+ + + Sbjct: 14 HLRPESKEPYAPEVLEQLRVDAAEVIARYPQKR--SALLPLLHLVQSVDGYVTGRGVSLC 71 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A +LD+ V +ATFYTQF+ P G V VC T C + G +++ + + Sbjct: 72 AELLDLTEAEVSGVATFYTQFKRHPNGEYT-VGVCTNTLCAVMGGDQIFDTVAEHLGIGH 130 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +DG ++ E +EC AC AP+VM + +++ TP+ +++D +G +RP Sbjct: 131 DETTADGKITLERIECNAACDYAPVVMTNWEFFDNQTPDSTVQLVDDLR--EGKDVRPTR 188 Query: 185 QIDRI 189 DR+ Sbjct: 189 GPDRV 193 >gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1] gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1] Length = 286 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 3/148 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +ATFY+ ++ + Sbjct: 37 IIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVATFYSMYRRT 94 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + ++E + P +DG ++ E VEC AC AP Sbjct: 95 PTGEYL-VGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAACDFAP 153 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +VM+ D +++ TP E++D +GQ Sbjct: 154 VVMVNWDFFDNQTPASARELVDGLRSGQ 181 >gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J] gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J] Length = 167 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|254391141|ref|ZP_05006348.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|294814398|ref|ZP_06773041.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus ATCC 27064] gi|326442788|ref|ZP_08217522.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|197704835|gb|EDY50647.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|294326997|gb|EFG08640.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus ATCC 27064] Length = 282 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +VISRYP SR SA++PLL Q +EG+VSR + A +LD+ V +ATFYT + Sbjct: 34 AKDVISRYPDSR--SALLPLLHLVQSEEGFVSRTGMRFCAEVLDLTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 92 RRGPSGDY-QVGVCTNTLCAVMGGDAIFEDLKEHLGVGNNGTTEDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+VM+ + +++ TP ++D G+ Sbjct: 151 FAPVVMVNWEFFDNQTPASARALVDDLRAGR 181 >gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703 [Drosophila yakuba] Length = 155 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 >gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis ATCC 25486] gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis ATCC 25486] Length = 276 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP SR SA++PLL Q +EG VSR + A +LD+ V +ATFY+ + Sbjct: 28 AKEIIARYPGSR--SALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFYSMY 85 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 86 RRKPSG-EYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHIECNAACD 144 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+VM+ + +++ TP+ ++++D G+ Sbjct: 145 FAPVVMVNWEFFDNQTPQSAKQLVDDLRAGE 175 >gi|254525004|ref|ZP_05137059.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp. SKA14] gi|219722595|gb|EED41120.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp. SKA14] Length = 175 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ EGW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|269794077|ref|YP_003313532.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542] gi|269096262|gb|ACZ20698.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542] Length = 319 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++ RYP +R SA++P+L Q ++G+VSR+ I A +LD+ V +ATFYTQ+ Sbjct: 30 AHQIVGRYPQAR--SALLPMLHLVQSEDGYVSRSGITFCAEVLDLTPAEVSAVATFYTQY 87 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P GT V VC T C + G +++ + + DG ++ E VEC AC Sbjct: 88 KRRPNGTYT-VGVCTNTLCAIMGGDEIFDELSEHLGIGHDETTEDGAVTLERVECNAACD 146 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP++M+ + ++D TP ++D G+ Sbjct: 147 YAPVMMVNWEFFDDQTPASARGVVDDLRFGK 177 >gi|119897691|ref|YP_932904.1| NADH dehydrogenase subunit E [Azoarcus sp. BH72] gi|119670104|emb|CAL94017.1| putative NADH-ubiquinone oxidoreductase chain E [Azoarcus sp. BH72] Length = 159 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ I++YPP + QSA + L AQ ++GW+S+ I VA+ L M I V E Sbjct: 2 LSQESLQQIDREIAKYPPDQKQSAAMSALRIAQVEKGWLSKETIAFVADYLQMPAIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG R + VC PC L G E + K+ DG + +E Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAAEYIKQKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169 EC GAC +AP+++ T +T E++++++ Sbjct: 121 GECMGACGDAPVLLHNNHTMCSWMTTEKIDQLL 153 >gi|239943480|ref|ZP_04695417.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379] gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] Length = 279 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EV++RYP SR SA++PLL Q +EG+VSR I A LD+ V ++TFY+ + Sbjct: 21 AKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGIAFCAETLDLTTAEVTAVSTFYSMY 78 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + + + + DG ++ E +EC AC Sbjct: 79 RRRPSGDY-QVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAACD 137 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 AP+VM+ + +++ TPE +++D G+ T+ P Sbjct: 138 FAPVVMVNWEFFDNQTPESATQLVDDLIAGR--TVEP 172 >gi|149909801|ref|ZP_01898452.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36] gi|149807133|gb|EDM67089.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36] Length = 207 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 86/148 (58%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ YP R SA++P L AQ+ G++ A +A ILD+ I V E+A+FYT + Sbjct: 18 IADIVKCYPTQR--SAIMPALYLAQDTYGFLDETAYRAIAEILDIPEIWVFELASFYTLY 75 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +G + ++Q+C PCMLRG L+ + ++ ++DG + VEC G+C Sbjct: 76 KNKKIG-KYNLQLCTNVPCMLRGAYDLLGHLQTRLGINKGDTSTDGLFTLTTVECIGSCD 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP +M+ + + +L+ ER+++++D S Sbjct: 135 LAPAMMVNETYHTNLSKERVDKLLDQLS 162 >gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836] gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM 17836] Length = 275 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 + SE + + E+ +RYP R SA++P+L Q EG V+ IE A++L + Sbjct: 15 YSTGDSKISETTIAEMRELAARYPVGR--SALLPMLHLVQSVEGRVTPEGIEACADVLGL 72 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFYT ++ PVG HV VC T C + G + + E + + D Sbjct: 73 TGAEVSAVATFYTMYKRRPVGDY-HVGVCTNTLCAVMGGDLIFERLKQHLDVGNDETTED 131 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 G ++ E +EC AC AP++M+ + ++D+TPE +++D G Sbjct: 132 GKITLEHIECNAACDYAPVMMVNWEFFDDMTPESATQLVDDLRDG 176 >gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000] gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein [Ralstonia solanacearum GMI1000] gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum CMR15] Length = 167 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLTVCTNLPCALSGGERAADYLKQKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|301631487|ref|XP_002944829.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 163 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YPP + QSAV+ L Q+++GWVS+ + V+A IL M I V E+ TFY + P Sbjct: 13 VAKYPPEQKQSAVMACLSIVQQEQGWVSQESEAVIAEILGMPQIAVHEVTTFYNMYNQHP 72 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LRG + + K+ + DG + ++ EC GAC +AP+ Sbjct: 73 VG-KFKLNVCTNLPCQLRGGYEALHHLEAKLGVQMGETTPDGLFTLQQCECLGACADAPV 131 Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177 +++ ++ + E+L++++D +G Sbjct: 132 MLVNDRNMCSFMDGEKLDQLVDGLKAAEG 160 >gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155] gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str. MC2 155] Length = 245 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++I+RYP +R SA++PLL Q Q+G+++ A I A L + V +ATFY+ ++ Sbjct: 39 QIIARYPDAR--SALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAVATFYSMYRR 96 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 +P G V VC T C + G + ++E + + P DG ++ E VEC AC A Sbjct: 97 TPTGDYL-VGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTLEHVECNAACDYA 155 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + Y++ TP +++D +G Sbjct: 156 PVVMVNWEFYDNQTPSSARDLVDGLRSG 183 >gi|261856546|ref|YP_003263829.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus neapolitanus c2] gi|261837015|gb|ACX96782.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus neapolitanus c2] Length = 165 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+ + ++ +S+YPP + QSAV+ L Q Q EG+++ ++ +A L+M I V Sbjct: 9 LSDHTRHEIDHWLSKYPPEQKQSAVLAALRETQHQNEGYLTTDLMDAIAEYLEMPPISVY 68 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ + P G R HV +C C L G ++++ C K+ K DG + + Sbjct: 69 EVATFYSMLETKPCG-RHHVSICTNISCALMGSDEIVAHCEKKLGIKLGESTPDGRIYLK 127 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC PM+ + YE LTP++++ I+D Sbjct: 128 VEEECLAACDGGPMMQVDHVYYERLTPQKVDAILDKL 164 >gi|163848444|ref|YP_001636488.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aurantiacus J-10-fl] gi|222526372|ref|YP_002570843.1| NADH-quinone oxidoreductase subunit E [Chloroflexus sp. Y-400-fl] gi|163669733|gb|ABY36099.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aurantiacus J-10-fl] gi|222450251|gb|ACM54517.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus sp. Y-400-fl] Length = 230 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++RY R SAV+PLL AQ+ G+++ AI VA ILD+ V E+ FYT F Sbjct: 11 IEAIVARYASKR--SAVLPLLYLAQDTYGYLTDEAIREVATILDLPPTDVYEVVGFYTLF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVGT +QVC PC G E+LI + + + +DG + + V+C AC Sbjct: 69 YDRPVGTWV-LQVCDDVPCCFCGAEELISALKQALGIREEETTADGMFTLQRVKCLAACD 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP++ D D+TPER+E +++ Sbjct: 128 RAPVLQANLDYVYDVTPERVEVLLN 152 >gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S] gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S] Length = 688 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 7/156 (4%) Query: 27 NEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 +E+I+RY PP +SA++PLL Q ++G VS+A IE A L + V +AT Sbjct: 37 DEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIEFCAAQLGLTAAEVTAVAT 96 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT ++ P GT HV VC + C + G + + R + DG ++ E +EC Sbjct: 97 FYTMYRREPTGTY-HVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTPDGAITLEHIEC 155 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AC AP++M+ + +++ TPE ++DA G+ Sbjct: 156 NAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGE 191 >gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C] gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C] Length = 245 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I RYP SR SA++PLL Q +EG+VSR I A +L + V +ATFYT ++ Sbjct: 30 EIIGRYPDSR--SALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEVTAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + + + + +DG ++ E +EC AC A Sbjct: 88 KPSGDY-QVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLEHIECNAACDYA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP+ + ++D G+ Sbjct: 147 PVVMVNWEFFDNQTPQSAKALVDDLLAGR 175 >gi|78044572|ref|YP_359585.1| Fe-hydrogenase subunit gamma [Carboxydothermus hydrogenoformans Z-2901] gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 161 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E++S+Y + A+IP+L AQE G++ R +E ++ L + + +V +ATFY QF Sbjct: 17 LKELLSQYQGQK--GALIPVLQGAQEIYGYLPREVMEEISRSLKIPFSKVYGVATFYAQF 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R ++ C T C +RG K+ E +N++ D + E V C GAC Sbjct: 75 HLKPRG-RNVIRACLGTACHVRGGAKVFETLKNELGIGDGETTPDLRFTLESVACIGACG 133 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++M+ DTY LTP++++EI+ + Sbjct: 134 LAPVIMVNNDTYGRLTPDKVKEILAKY 160 >gi|237748887|ref|ZP_04579367.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13] gi|229380249|gb|EEO30340.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13] Length = 159 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SEES ++ + ++PP++ +SA I L AQ+++GW+S I+ VAN L + I V E Sbjct: 3 LSEESYRKIDRELEKFPPTKKRSAAIAALTVAQDEKGWLSPDVIKEVANYLGLPAIAVGE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ F SPVG + + VC PC + G ++ R K+ + DG + Sbjct: 63 VASFYSMFNTSPVG-KYKIAVCSNLPCEMTGSDQAAAYLRQKLGIEFGETTPDGLFTLVA 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170 EC GAC + P++M+ K+ + +T ++++ +++ Sbjct: 122 SECMGACGDGPVIMVNNKNMHMRMTNDKIDRLLE 155 >gi|156741305|ref|YP_001431434.1| NADH-quinone oxidoreductase subunit E [Roseiflexus castenholzii DSM 13941] gi|156232633|gb|ABU57416.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus castenholzii DSM 13941] Length = 174 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S E+ + +I+RYP R SAV+PLL AQ++ G+++ AA+ VA +LDM V Sbjct: 1 MSLIEKYGAEIESIIARYPHKR--SAVLPLLFIAQDEYGYLTDAAMREVATLLDMPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FY+ PVG R +QVC PC G E LI + K+ DG + Sbjct: 59 FEVAGFYSLLYEQPVG-RWVLQVCDDVPCAFCGAEDLIAALQAKLGIAVDQTTPDGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEII 169 + V+C C +AP++ + Y DL TPE+++ ++ Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVDAVL 152 >gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + QSAV+ L AQ+++GW++ ++ VA L M I V E Sbjct: 2 LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT + L P+G + + VC PC L G + + R K+ +DG + +E Sbjct: 62 VATFYTMYNLQPIG-KYKITVCTNLPCALSGANEAVAHFREKLGIGFNETTADGKFTLKE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ K ++ ++++++++ S Sbjct: 121 GECMGACGDAPVLLVNNKRMCSFMSNDKIDQLLEDLS 157 >gi|227204477|dbj|BAH57090.1| AT4G02580 [Arabidopsis thaliana] Length = 163 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 18/154 (11%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + Sbjct: 1 MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170 K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++ Sbjct: 60 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 119 Query: 171 AFSTGQ---GDTIRPGPQIDRISSAPAGGLTSLL 201 G+ T P RI P GG +LL Sbjct: 120 KLRKGEKPPHGTQNP----KRIKCGPEGGNKTLL 149 >gi|239929610|ref|ZP_04686563.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG V+R ++ A++L + V +ATFYT ++ Sbjct: 36 EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 94 RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACDYA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE + ++D G+ Sbjct: 153 PVVMVNWEFFDNQTPESAKRMVDDLRAGR 181 >gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I] gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50] gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella pertussis Tohama I] gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella bronchiseptica RB50] gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS] Length = 164 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V E Sbjct: 3 LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVGT + VC PC LR EK + + K+ +DG + E Sbjct: 63 VATFYNMFDVKPVGTH-KIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ K +T E+L+ ++D + QG++ Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKS-QGES 163 >gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718] gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 162 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 SS S E+ ++ +++YP R QSAV+ L AQ+++GW++ ++ +A+ L+M I Sbjct: 2 SSSMLSTEALRKIDREVAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAI 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + L PVG + + VC PC L G + + + K+ +DG Sbjct: 62 AVYEVATFYNMYNLKPVG-KYKLTVCTNLPCALSGGNQTADYLKQKLGIGFNETTTDGLF 120 Query: 134 SWEEVECQGACVNAPMVMIGKD-----TYEDLTPERLEEI 168 + +E EC G+C +AP++++ ED + LEE+ Sbjct: 121 TLKEGECMGSCGDAPVLLVNNKRMCSFMTEDQIDKLLEEL 160 >gi|329944206|ref|ZP_08292465.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str. F0386] gi|328530936|gb|EGF57792.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str. F0386] Length = 256 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLFQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P GT HV VC C + G +++ + DGT+S E +EC AC Sbjct: 108 RRHPAGTY-HVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERIECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + +++ TP+ +I A G+ GP+ Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206 >gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus XylebKG-1] gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus XylebKG-1] Length = 285 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EV++RYP SR SA++PLL Q +EG+VSR + A LD+ V +ATFY+ + Sbjct: 32 AKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAETLDLTTAEVTAVATFYSMY 89 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + + + + DG ++ E +EC AC Sbjct: 90 RRRPSGDY-QVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAACD 148 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 AP+VM+ + +++ TPE ++D G+ T+ P Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183 >gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum PSI07] gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum PSI07] Length = 167 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G ++ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGDRAADYLKQKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|226227805|ref|YP_002761911.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] gi|226090996|dbj|BAH39441.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] Length = 158 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 1/142 (0%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP S IP L R QE+ G+++ + I+ + L + ++V E+ FYTQF P+G Sbjct: 17 RYPSDFTGSLTIPCLRRIQEERGYIADSDIDELVAYLGVPRMQVDEVIAFYTQFTRVPLG 76 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 H+QVC C LRG E L+ K+ +P +DG + VEC +C APM+M Sbjct: 77 NH-HLQVCHNLSCSLRGAEGLVGYLCAKLGIQPGETTADGKFTLSTVECLASCGTAPMMM 135 Query: 152 IGKDTYEDLTPERLEEIIDAFS 173 + +E+LTP ++ +++ S Sbjct: 136 VNDTYHENLTPASVDALLEDLS 157 >gi|282860723|ref|ZP_06269789.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE] gi|282564459|gb|EFB69995.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE] Length = 285 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EVI+RYP SR SA++PLL Q +EG+VSR + A +L + V +ATFYT + Sbjct: 32 AKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAELLGLTTAEVTAVATFYTMY 89 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + + ++ + DG ++ E +EC AC Sbjct: 90 RRRPSGDY-QVGVCTNTLCAVMGGDAIFDRLKDHLGVGNDETTEDGKVTLEHIECNAACD 148 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 AP+VM+ + +++ TPE ++D G+ T+ P Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183 >gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] Length = 688 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 7/156 (4%) Query: 27 NEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 +E+I+RY PP +SA++PLL Q ++G VS+A I+ A L + V +AT Sbjct: 37 DEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIDFCAAQLGLTAAEVTAVAT 96 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT ++ P GT HV VC + C + G + + R + +DG ++ E +EC Sbjct: 97 FYTMYRREPTGTY-HVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTADGAITLEHIEC 155 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AC AP++M+ + +++ TPE ++DA G+ Sbjct: 156 NAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGE 191 >gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822] gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella parapertussis] Length = 164 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V E Sbjct: 3 LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVGT + VC PC LR EK + + K+ +DG + E Sbjct: 63 VATFYNMFDVKPVGTH-KIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ K +T E+L+ ++D + QG++ Sbjct: 122 GECMGACGDSPVLILNNKHMCVRMTEEKLDALVDGLKS-QGES 163 >gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 639 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 6/179 (3%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + +P + F+ +S + ++E++ YP +SA++PLL Q E VS A IE +A IL Sbjct: 4 KLEPETPFFAAKSEL-LSEILGSYPEYGRRSAIMPLLWAVQRAERQVSEARIEEIAAILG 62 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + V + +FY+ + PVG R H+Q+C T C L G +++ + ++ ++ Sbjct: 63 LTATEVKGVMSFYSTYHERPVG-RYHLQLCSTLSCSLAGSDEMYDFLVTELGIVNGETDA 121 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 +G S ++VEC G+C AP++ + D YE +T R + +++A G+ +P PQ +R Sbjct: 122 EGLFSLQKVECLGSCGTAPVLQVNDDYYERVTRPRCQALLEALRGGE----QPEPQRER 176 >gi|323703025|ref|ZP_08114681.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532038|gb|EGB21921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 176 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P S S E+ +++++++Y + A I +L + Q G++ ++ +E ++ + Sbjct: 4 PDSLKLSAENFDAIDQIVNKYNSDK--GAAIMILQQVQATYGYIGQSMLERISQLTGTPT 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + I TFY+QF+L P+G +QVC T C L G E++ E ++ KP H + DG Sbjct: 62 SELFSIVTFYSQFRLEPLGEN-FIQVCHGTACHLAGAERISEAVQHVTKAKPGHTSPDGK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + E V C G C + P++ + +T+ +TP+++++++ Sbjct: 121 FTLEHVACLGCCSHGPIMTLNNETFARMTPDKVKKML 157 >gi|190575274|ref|YP_001973119.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia K279a] gi|190013196|emb|CAQ46829.1| putative respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Stenotrophomonas maltophilia K279a] Length = 175 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|56478180|ref|YP_159769.1| NADH dehydrogenase subunit E [Aromatoleum aromaticum EbN1] gi|56314223|emb|CAI08868.1| NADH dehydrogenase I, chain E [Aromatoleum aromaticum EbN1] Length = 159 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S++S ++ I++YPP + QSAV+ L AQ + GW+++ IE VA LDM I E Sbjct: 2 LSQKSLQQIDREIAKYPPDQKQSAVMSALRIAQIEMGWLAKETIEFVAGYLDMPAIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG R + VC PC L G + + K+ DG + +E Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAADYVKQKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169 EC GAC +AP++++ +T E++++++ Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQLL 153 >gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 233 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++ Sbjct: 18 EIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYKR 77 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC A Sbjct: 78 RPNG-EYNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDFA 136 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++M+ + +++ TP+ +++D G Sbjct: 137 PVIMVNWEFFDNQTPQSAVKLVDDLRAGN 165 >gi|218662328|ref|ZP_03518258.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli IE4771] Length = 170 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 AP++ +G D + DL R++ ++D T G D S+AP G Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169 >gi|254468730|ref|ZP_05082136.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13] gi|207087540|gb|EDZ64823.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13] Length = 156 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++ + +YP + QSAVI L Q GW+S+ I VA LDM I VLE+ATFY F Sbjct: 9 IDKELKKYPSDKKQSAVIAALAIMQNDRGWLSKEDISEVALYLDMPEIAVLEVATFYNMF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L VG R + +C CMLR + ++ + K+ DG +E EC GAC Sbjct: 69 DLKSVG-RYKLSICTNISCMLRDADHIVNHLKEKLQIDFNEVTRDGKFCLKESECMGACG 127 Query: 146 NAPMVMI-GKDTYEDLTPERLEEII 169 AP++ + + +E+L +++++++ Sbjct: 128 GAPLLTVNNQKMHENLNIDKVDQLL 152 >gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D] gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp. 5_7_47FAA] gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D] gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp. 5_7_47FAA] Length = 167 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus mobilis Nb-231] gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus mobilis Nb-231] Length = 167 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 3/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 S S E ++ ++++P +SAVIP L AQE G W+SR +E VA L++ Sbjct: 7 SEKHLSAEQRSEIDHWLAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPP 66 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+ TFY+ F L P G R V +C C+LRG E+++E NK+ +DG Sbjct: 67 VAVYEVGTFYSMFDLKPTG-RHKVNICTNISCLLRGAERIVEHVENKLGISVGETTADGR 125 Query: 133 LSWE-EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ + E EC AC APM+++ ++ + DLTPE+++EI+D Sbjct: 126 ITLKGEEECLAACAAAPMMLVDEEYHVDLTPEKVDEILDKL 166 >gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum CFBP2957] gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum CFBP2957] Length = 167 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC 39149] gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC 39149] Length = 295 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 1/158 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+E++ E+I+RYP R +SA++PLL Q +EG+VS + +E A +L + +V Sbjct: 4 FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ P G V VC T C + G +++ + + +DGT++ E Sbjct: 64 VATFYTMYKRKPTGDYL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTADGTVTLEH 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 EC AC P++ + D ++ + P+ +++ +G Sbjct: 123 AECLAACDYGPVMTVNYDFFDGVDPQTALGVVEELRSG 160 >gi|221068608|ref|ZP_03544713.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni KF-1] gi|264677202|ref|YP_003277108.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni CNB-2] gi|299530746|ref|ZP_07044161.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44] gi|220713631|gb|EED68999.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni KF-1] gi|262207714|gb|ACY31812.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni CNB-2] gi|298721262|gb|EFI62204.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44] Length = 163 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+++GWVS+ + V+A +L MA I V E+ TFY + P Sbjct: 14 VAKYPADQKQSAVMACLSIVQQEQGWVSQESEAVIAEVLGMAEIAVHEVTTFYNMYNQQP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LR K + +K+ K DG + ++ EC GAC ++P+ Sbjct: 74 VG-KYKLNVCTNLPCQLRDGYKALHHLEHKLGIKMGETTKDGLFTLQQSECLGACADSPV 132 Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 +++ ++ E+L+E++D +G Sbjct: 133 MLVNDRCMCSFMSNEKLDELVDGLRAAEG 161 >gi|296268277|ref|YP_003650909.1| NADH-quinone oxidoreductase subunit E [Thermobispora bispora DSM 43833] gi|296091064|gb|ADG87016.1| NADH-quinone oxidoreductase, E subunit [Thermobispora bispora DSM 43833] Length = 231 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP R SA++PLL Q ++G++S E A L + VL +ATFYT + Sbjct: 15 AKEIIARYPKPR--SALLPLLHLVQSEDGYISDDGAEFCAEQLGLTKAEVLGVATFYTMY 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G +V VC T C + G +++ E + DG ++ E +EC AC Sbjct: 73 KREPAG-EYNVGVCINTLCAVMGGDQIWETLTEHLGIGHNETTPDGKITLERLECNAACD 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+V++ + +++ TPE + ++D G+G T GP+ Sbjct: 132 YAPVVVVNWEFFDNQTPESAKRLVDDLRAGKGATPTRGPK 171 >gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234] gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234] Length = 170 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L+ AQ++ G + +E VA+IL + I V E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML G E L++ + + + + VEC GAC Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCGSEALLKHLETVLEIRKGDTTPNRLFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 AP++ +G D + +L RL+ ++D G I Sbjct: 124 MAPVMQVGDDYHGNLDTGRLDALLDRLRAEAGQVI 158 >gi|218674604|ref|ZP_03524273.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli GR56] Length = 170 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I + E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWIYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 AP++ +G D + DL R++ ++D T G D S+AP G Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169 >gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551] gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551] Length = 167 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKQKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169 EC GAC +AP VMI +T+ ++ E+L+ +I Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153 >gi|298246354|ref|ZP_06970160.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM 44963] gi|297553835|gb|EFH87700.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 7/175 (4%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ + E+ RYP +R SAV+P L AQE+EG+++RA +E VA + M V Sbjct: 2 ISEKAKERMRELAKRYPAAR--SAVMPSLYIAQEEEGYITRAGLEAVAEAVGMTIDDVES 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT + G + V+VC + C LR C+ ++E ++ K DG + + Sbjct: 60 VATFYTMYHKQAPGKKI-VKVCTSISCYLRNCDSVMEHLEQRLGIKRGETTPDGNFTLQG 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 VEC C AP++ + E++T E+ + +ID ++ G Q++ S Sbjct: 119 VECLATCGYAPVIQVNGQFVENVTLEKADALIDDLER----ELKQGKQVNESKSG 169 >gi|217970160|ref|YP_002355394.1| NADH dehydrogenase subunit E [Thauera sp. MZ1T] gi|217507487|gb|ACK54498.1| NADH-quinone oxidoreductase, E subunit [Thauera sp. MZ1T] Length = 159 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ I++YPP + QSAV+ L AQ ++GW+ + IE VA L M I E Sbjct: 2 LSQESLQQIDREIAKYPPDQTQSAVMAALRIAQVEKGWLPKELIEFVARYLGMPPIAAFE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L+PVG R + VC PC L G + + K+ DG + +E Sbjct: 62 VASFYNMYDLAPVG-RHKITVCTNLPCALSGGVHAADYIKEKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169 EC GAC +AP++++ +T E++++++ Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQML 153 >gi|254172735|ref|ZP_04879409.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp. AM4] gi|214032891|gb|EEB73719.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp. AM4] Length = 154 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 3/152 (1%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 + ++ YPP S++IPLL R QE+ G++ R +E +A L + RV +ATFY QF+ Sbjct: 6 DYLTSYPPE--PSSLIPLLQRTQERFGYLPREVLERIAEYLGIPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G + V++C T C + G +++ ++ + DG ++ E V C G C A Sbjct: 64 EPLG-KYVVRICHGTACHVNGAVTIVQAITEELGIEEGQTTEDGLITLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 P+VMI + LTP+++ ++I G+ D Sbjct: 123 PVVMINDKVFGKLTPDKVRKLIRKLREGKLDV 154 >gi|182412306|ref|YP_001817372.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1] gi|177839520|gb|ACB73772.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1] Length = 162 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 3/143 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++EVI+ YP R SA +PLL QE G++ A E +A L++ I V E+ TFY F Sbjct: 11 IDEVITHYPTKR--SATLPLLHLIQEDIGYIPAEAHEWIAAKLEIQPINVYEVVTFYPMF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P+G R HV+VC T C LRG K+ E + + K + DG ++ E VEC +C Sbjct: 69 RQKPIGRR-HVKVCRTLSCALRGGYKVCEQFEKEFNTKTGEISPDGEVTVEFVECLASCG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168 AP+VMI D +E++ + +++ Sbjct: 128 TAPVVMIDDDLHENVDAAKAKQL 150 >gi|294630800|ref|ZP_06709360.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14] gi|292834133|gb|EFF92482.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14] Length = 293 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++P+L Q +EG V+R + A++L + V +ATFYT ++ Sbjct: 39 EIIARYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCADVLGLTTAEVTAVATFYTMYRR 96 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + L E + + DG ++ E +EC AC A Sbjct: 97 KPSGDY-QVGVCTNTLCAVMGGDALFETLQEHLGVGNGETTDDGKVTLEHIECNAACDFA 155 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP ++ ++D G+ Sbjct: 156 PVVMVNWEFFDNQTPASVKRLVDDLRAGR 184 >gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas sp. 3As] Length = 170 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V E Sbjct: 6 LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY F PVG R + VC PC L G E + K+ DG + +E Sbjct: 66 VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 124 Query: 138 VECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170 EC GAC +AP +++ + + PERL+ +++ Sbjct: 125 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVE 158 >gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12] gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12] Length = 179 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V E Sbjct: 15 LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY F PVG R + VC PC L G E + K+ DG + +E Sbjct: 75 VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 133 Query: 138 VECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170 EC GAC +AP +++ + + PERL+ +++ Sbjct: 134 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVE 167 >gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3] gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3] Length = 262 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 5/169 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A++L + V Sbjct: 1 MAFSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C L G E + E + DG+++ Sbjct: 61 GAVATFYTMYKRHPVGDYL-VSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPDGSITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E EC AC AP++ + + Y+ + P+ + I++ G+ RP P Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGR----RPAP 164 >gi|315654701|ref|ZP_07907607.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC 51333] gi|315491165|gb|EFU80784.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC 51333] Length = 233 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++ Sbjct: 18 EIIARYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYKR 77 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC A Sbjct: 78 RPNG-EYNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDFA 136 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++M+ + +++ TP+ +++D G Sbjct: 137 PVIMVNWEFFDNQTPQSAVKLVDDLRAGN 165 >gi|125972859|ref|YP_001036769.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum ATCC 27405] gi|256005729|ref|ZP_05430684.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 2360] gi|125713084|gb|ABN51576.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Clostridium thermocellum ATCC 27405] gi|255990302|gb|EEU00429.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 2360] gi|316940903|gb|ADU74937.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 1313] Length = 165 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +NE+I +Y ++ A++P+L AQE G++ + +A L++ V + TFYTQF Sbjct: 19 LNEIIEKYKNTK--GALVPVLHEAQEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFYTQF 76 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G + +QVC T C ++G ++E + K+ SDG S E C GAC Sbjct: 77 SLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIGACG 135 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++MI D Y L P+ +E II+ + Sbjct: 136 LAPVIMINDDVYGRLVPDDIEGIIEKY 162 >gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1] gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1] Length = 307 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 VR A EE+ P + + A + VI RYP SR SA++PLL Q ++G ++ A IE Sbjct: 27 VRPGAREEYPPEVGARLDADA---DVVIGRYPNSR--SALLPLLHLVQAEDGCITPAGIE 81 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A L + V +ATFY+ ++ P G +V VC T C + G + ++ + Sbjct: 82 FCAGRLGLTGAEVAAVATFYSMYRRDPTGDY-YVGVCTNTLCAIMGGDAILAALEEHLDL 140 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 ++DG ++ E +EC AC AP+VM+ + +++ TPE ++D+ +G+ Sbjct: 141 PHGGTSADGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPESARSLVDSLRSGE 194 >gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147] gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786] Length = 161 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVGT + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYELAPVGTH-KITLCTNLPCQLGPHGGAEATAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160 >gi|269128609|ref|YP_003301979.1| NADH-quinone oxidoreductase subunit E [Thermomonospora curvata DSM 43183] gi|268313567|gb|ACY99941.1| NADH-quinone oxidoreductase, E subunit [Thermomonospora curvata DSM 43183] Length = 240 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP R SA++PLL Q +G ++ IE A L + +V +ATFYT + Sbjct: 15 AKEIIARYPKPR--SALLPLLHLVQSVDGHITSDGIEFCAEQLGITPAQVTGVATFYTMY 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG HV VC T C + G +++ E + DG +S E +EC AC Sbjct: 73 KHKPVG-EYHVGVCINTLCAVMGGDQIWEELSEYLGVGHDEATEDGKISLERLECNAACD 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + ++++TPE+ ++++D G+ GP+ Sbjct: 132 YAPVVMVNWEFFDNMTPEKAKQLVDDLRAGKEVAPTRGPK 171 >gi|253996969|ref|YP_003049033.1| NADH-quinone oxidoreductase subunit E [Methylotenera mobilis JLW8] gi|253983648|gb|ACT48506.1| NADH-quinone oxidoreductase, E subunit [Methylotenera mobilis JLW8] Length = 157 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E Sbjct: 2 LSPEATTKIDYELTKYPADQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + LSPVG + V +C CMLRG ++++ ++K+ DG +E Sbjct: 62 VATFYNMYDLSPVG-KYKVTICTNISCMLRGSDEIVNHLQSKLGVGFNEVTPDGKFCLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 EC G C AP++ + + +E LT ++++ II+ Sbjct: 121 GECMGCCGGAPLMHVNNTEMHEFLTTDKVDAIIEGL 156 >gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus ATCC 33331] Length = 293 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EVI+RYP SR SA++PLL Q +EG+VSR + A+ L + V +ATFYT + Sbjct: 32 AKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCADQLGLTTAEVTAVATFYTMY 89 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + + + + DG ++ E +EC AC Sbjct: 90 RRRPSGDY-QVGVCTNTLCAVMGGDAIFDRLKEHLGVGNDETTDDGKVTLEHIECNAACD 148 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 AP+VM+ + +++ TPE ++D G+ T+ P Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183 >gi|326382759|ref|ZP_08204449.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395] gi|326198349|gb|EGD55533.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 VI+RYP R SA++PLL Q +G+++RA + A L + +V +ATFY+ ++ Sbjct: 48 VIARYP--RSGSALLPLLHLVQSHDGYLTRAGVAFCAEQLGLTAAQVASVATFYSMYRRE 105 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + ++ + +P DG ++ E VEC AC AP Sbjct: 106 PTGDYL-VGVCTNTLCAVMGGDAILSELTETLGIRPGETTPDGRVTLEHVECNAACDFAP 164 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 +VM+ + ++D TP+ + ++D +G GP+I Sbjct: 165 VVMVNWEFFDDQTPDSAKALVDDLRSGVPRAPSRGPEI 202 >gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 178 str. F0338] gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 178 str. F0338] Length = 233 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++I+RYP +SA++P+L Q +G+VS I++++ ILD+ + +ATFYTQ++ Sbjct: 17 QIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLPRAEISAVATFYTQYKR 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC C + G +++ E K+ + G ++ E +EC AC A Sbjct: 77 HPTGDYL-VGVCTNALCAVMGGDEIWERVSAKVGVGSDETSESGRITLERIECNAACDYA 135 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 P+VM+ + +++ TPE +ID G+ GP + Sbjct: 136 PVVMVNWEFFDNQTPESALALIDDIEAGRDIHPTRGPAV 174 >gi|71906592|ref|YP_284179.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB] gi|71846213|gb|AAZ45709.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB] Length = 157 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+ +++YP + QSA + L AQE++GW++ +IE VAN L M I E Sbjct: 2 FSAETLQKFAREVAKYPADQKQSASMACLAHAQEEKGWLAPESIEAVANYLGMPPIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG + + VC PC L G E ++K+ DG + +E Sbjct: 62 VASFYNMYDLKPVG-KYKITVCTNLPCALSGGYHAGEYLQHKLGVGYGETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170 EC GAC +AP+ ++ + + PE+++++++ Sbjct: 121 GECMGACGDAPVFIVNNRSMCSHMHPEQIDKLLE 154 >gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134] gi|72118081|gb|AAZ60344.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] Length = 168 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 4/155 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ LDM + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-RFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEIID 170 EC GAC +AP VMI +T ++ ++L+ ++D Sbjct: 123 GECMGACGDAP-VMIVNNTRMCSFMSDDKLDALVD 156 >gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus] Length = 155 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 22 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 81 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 82 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 140 >gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1] Length = 255 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFYT ++ Sbjct: 30 EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEVTAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 88 KPSGDY-QVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLEHIECNAACDYA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+VM+ + +++ T + E ++D G+ T+ P Sbjct: 147 PVVMVNWEFFDNQTVDSAERMVDDLRAGR--TVEP 179 >gi|291296252|ref|YP_003507650.1| NADH-quinone oxidoreductase E subunit [Meiothermus ruber DSM 1279] gi|290471211|gb|ADD28630.1| NADH-quinone oxidoreductase, E subunit [Meiothermus ruber DSM 1279] Length = 188 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+NEV ++YP R +A++P+L R Q+ EGW+S E +A IL + V Sbjct: 6 MGFFDDKQDWLNEVFAQYPDRR--AALMPMLRRVQQDEGWISPERQEEIARILGITATEV 63 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ +Q P G + H+QVC T C + G ++L + + DG S Sbjct: 64 AGVMSFYSYYQALPTG-KYHLQVCATLSCAIGGADELWDELVETLGILRGEVTPDGLFSI 122 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP++ + + Y E +T RL ++ G+ Sbjct: 123 QKVECLGSCHTAPVIQVNDEPYVECVTKARLHALLQGLREGK 164 >gi|187477545|ref|YP_785569.1| NADH dehydrogenase subunit E [Bordetella avium 197N] gi|115422131|emb|CAJ48655.1| NADH dehydrogenase I chain E [Bordetella avium 197N] Length = 164 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++++P + QSA++ L AQE++GW+S IE VA + +A I V E+ATFY F Sbjct: 11 IDRELAKFPADQRQSAIMASLAIAQEEKGWLSAEIIEDVAKYIGVAPIAVQEVATFYNMF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG + VC PC LR EK E + K+ +DG + E EC GAC Sbjct: 71 DVKPVGVH-KIAVCTNLPCALRDGEKAGEYLKRKLGVGYRETTADGKFTLIEGECMGACG 129 Query: 146 NAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGD 178 +AP++++ K ++ ++L+ ++D + QG+ Sbjct: 130 DAPVLIVNNKHMCVRMSEQKLDALVDGLKS-QGE 162 >gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium marinum M] gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium marinum M] Length = 251 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A + + P + + E I E+I RYP R SA++PLL Q ++ +++ A ++ AN Sbjct: 28 APQAYSPDALARLE---IEAKEIIGRYPDQR--SALLPLLHLVQGEDSYLTPAGLQFCAN 82 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 L + V +A+FYT ++ P G V VC T C + G + + E ++ + Sbjct: 83 QLGLTGAEVSAVASFYTMYRRGPTGEYL-VGVCTNTLCAVMGGDAIFETLKDHLGVGNDE 141 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 SDG+++ +EC AC AP+VM+ + +++ TPE E++D+ +G+ Sbjct: 142 TTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSGE 191 >gi|148657774|ref|YP_001277979.1| NADH-quinone oxidoreductase subunit E [Roseiflexus sp. RS-1] gi|148569884|gb|ABQ92029.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus sp. RS-1] Length = 174 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 4/155 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S E+ + +I+RYP SAV+PLL AQ++ G+++ AA+ VA +LDM V Sbjct: 1 MSLIEKHGAEIEAIIARYPHK--PSAVLPLLFIAQDEYGYLTEAAMREVAELLDMPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FY+ PVG +QVC PC G E LI + K+ DG + Sbjct: 59 FEVAGFYSLLYEQPVGKWV-LQVCDDVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEII 169 + V+C C +AP++ + Y DL TPE++E+++ Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVEQVL 152 >gi|187736102|ref|YP_001878214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia muciniphila ATCC BAA-835] gi|187426154|gb|ACD05433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 12/175 (6%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E F P+ F + E +E ++ YP + +SAV+P+L Q++ G++S AI V L Sbjct: 21 ERFYPA-FEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAWVGEKL 79 Query: 69 DMAYIRVLEIATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC------RNKI 120 +++ VL + TFY Q+ P + H++VC T C + G + L + +C +N I Sbjct: 80 NISAAHVLGVVTFYPGLRQMCP--GKNHIRVCRTLSCAMAGADSLFDAICTRLGIDKNGI 137 Query: 121 -HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 H P+ + DG S E VEC C P +M+ YE +TPE LEE+I + T Sbjct: 138 DHHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQT 192 >gi|297625186|ref|YP_003706620.1| NADH-quinone oxidoreductase subunit E [Truepera radiovictrix DSM 17093] gi|297166366|gb|ADI16077.1| NADH-quinone oxidoreductase, E subunit [Truepera radiovictrix DSM 17093] Length = 191 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E++ RYP +SAV+PLL Q E +S A IE +A IL + V + +FY+ + Sbjct: 18 LSEILGRYPEYGRRSAVMPLLWEVQRAERHISEARIEEIAEILGLHATEVKGVMSFYSTY 77 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG + H+Q+C T C L G +++ + + + +G S ++VEC G+C Sbjct: 78 HELPVG-KYHLQICATLSCSLAGADEMYDFISEETGLVSGETDREGLFSLQKVECLGSCG 136 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 AP++ + YE +TP R + ++ A G+ P P +R Sbjct: 137 TAPVLQVNDTFYERVTPSRCKALLAALRRGE----EPAPWRER 175 >gi|297625732|ref|YP_003687495.1| NADH-quinone oxidoreductase chain E [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921497|emb|CBL56051.1| NADH-quinone oxidoreductase chain E [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 243 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + +EE+ + + +RYP +R SA++P+L Q +G VS A + VA I + + Sbjct: 22 STNITEETMAEMRAIAARYPDAR--SALMPMLHLVQSVDGRVSDAGMRAVAEIAGVNTAQ 79 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + H+ VC T C + G + L+ K+ DG S Sbjct: 80 VNGVATFYTMYKRRPAGHQ-HIGVCTTALCAVMGGDILLSHVEKKLGIHEGETTPDGKFS 138 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 E +EC C AP++M+ + +++TP + +E++D + G+ Sbjct: 139 LERLECNAGCDFAPVMMVNWEYMDNMTPAKADELLDKLAAGE 180 >gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 180 str. F0310] gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 180 str. F0310] Length = 235 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 1/149 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++I+RYP +SA++P+L Q +G+VS I+ ++ L++ + +ATFYTQ++ Sbjct: 17 QIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELPRAEISAVATFYTQYKR 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC C + G +++ E +K+ ++DG ++ E +EC AC A Sbjct: 77 HPTGDYL-VGVCTNALCAVMGGDEIWEKVSDKVGVGSDETSADGRITLERIECNAACDYA 135 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE +ID G+ Sbjct: 136 PVVMVNWEFFDNQTPESAAAMIDDIQEGR 164 >gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 174 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YPP + QSAV+ L Q+++GWVS + V+A +L M I V E+ TFY + P Sbjct: 25 VAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIAEVLGMPQIAVHEVTTFYNMYNQQP 84 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + + VC PC LR +K + K+ DG + ++ EC GAC +AP+ Sbjct: 85 LG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGIAMGETTPDGLFTLQQCECLGACADAPV 143 Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 +++ T + E+L++++D +G Sbjct: 144 MLVNDRTMCSFMDNEKLDQLVDGLRQAEG 172 >gi|256831783|ref|YP_003160510.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM 20603] gi|256685314|gb|ACV08207.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM 20603] Length = 269 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 3/156 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ RYP +R SA++P+L Q +G+V+R I+ A+ LD+ V +ATFYTQ++ Sbjct: 30 IMGRYPNAR--SALLPMLHLVQSVDGYVTRRGIQFCADQLDLTAAEVSAVATFYTQYKRR 87 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + + E + DG ++ E VEC C AP Sbjct: 88 PNGDYT-VGVCTNTLCAVMGGDAIYEELSTYLGIGHDETTDDGKITLERVECNAGCDYAP 146 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +VM+ + +++ TP+ +++I+D G T GP Sbjct: 147 VVMVNWEFFDNQTPDSMKKIVDELRLGNDVTPSRGP 182 >gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii ATCC 43553] gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii ATCC 43553] Length = 164 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVG + + VC PC LR ++ E + K+ +DG + E Sbjct: 63 VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGDRAGEYLKRKLGVDYRQTTADGQFTLVE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ K +T E+L+ ++ A QG++ Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTDEKLDALVAALKV-QGES 163 >gi|262195155|ref|YP_003266364.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM 14365] gi|262078502|gb|ACY14471.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM 14365] Length = 172 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 5/157 (3%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S FS E+ ++ + RYP Q V+ L AQ++ G +S A+ VVA L++ Y Sbjct: 8 SPLEFSAEARQKIDALSQRYPTK--QPVVLAALHLAQKEFGHLSDDALRVVAKTLELPYP 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFYT F+ P G ++VC CMLRG ++E ++ K +S G Sbjct: 66 HVYGVATFYTMFRRQPAGKNV-LRVCTNISCMLRGAYDVLEAFEKRLGIKV--GDSSGDF 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 E EC AC NAP V+ G + D+ P +++EIID Sbjct: 123 HLVEEECIAACANAPAVICGTKYFLDVEPSQVDEIID 159 >gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99] gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium ulcerans Agy99] Length = 251 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A + + P + + E I E+I RYP R SA++PLL Q ++ +++ A ++ AN Sbjct: 28 APQAYPPDALARLE---IEAKEIIGRYPDQR--SALLPLLHLVQGEDSYLTPAGLQFCAN 82 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 L + V +A+FYT ++ P G V VC T C + G + + E ++ + Sbjct: 83 QLGLTGAEVSAVASFYTMYRRGPTGEYL-VGVCTNTLCAVMGGDAIFETLKDHLGVGNDE 141 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 SDG+++ +EC AC AP+VM+ + +++ TPE E++D+ +G+ Sbjct: 142 TTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSGE 191 >gi|119714788|ref|YP_921753.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614] gi|119535449|gb|ABL80066.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614] Length = 263 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S ++E+ + E+ +RYP R S ++P+L Q EG ++ IE A++L + V Sbjct: 1 MSLTQETYGELQEIAARYPEPR--SGLLPMLHLVQSAEGRITPEGIEACADLLGVTAAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG HV VC T C + G + + + ++ + DG ++ Sbjct: 59 SGVATFYTMYKRRPVGDY-HVGVCTNTLCAVMGGDAIFDRLKSDLGVGNDETTEDGKITL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--------- 186 E +EC AC AP++M+ + +++TP+ IID G GP+I Sbjct: 118 EHIECNAACDYAPVMMVNWEFMDNMTPDTAARIIDDLRAGNEVHSTRGPRIVTWREAERV 177 Query: 187 ------DRISSAPAGGLTSLL 201 D PA G SL+ Sbjct: 178 LAGFPDDLADEGPAAGRASLV 198 >gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000] gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000] Length = 286 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG V+R + A++L + V +ATFY+ ++ Sbjct: 36 EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAEVTAVATFYSMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 94 RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTLEHIECNAACDFA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE + ++D G+ Sbjct: 153 PVVMVNWEFFDNQTPESAKRMVDDLRAGR 181 >gi|157779398|gb|ABV71242.1| NADPH-dependent sulfur oxidoreductase A subunit [Thermococcus litoralis DSM 5473] Length = 154 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E I Y P+ S++IPLL + QE G++ R A+E ++ L + RV +ATFY QF+ Sbjct: 6 EYIYNYEPN--PSSLIPLLQKTQEIFGYLPREALEEISKYLKLPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G +++C T C + G + + + ++ + DG ++ E V C G C A Sbjct: 64 EPLGKYV-IKICHGTACHVNGAVNISQAIKEEVGVEEGQTTQDGLITLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++MI + LTPE++ +II G+ Sbjct: 123 PVIMINDKVFGKLTPEKVRKIIKNLKEGK 151 >gi|319943352|ref|ZP_08017634.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC 51599] gi|319743167|gb|EFV95572.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC 51599] Length = 173 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P S ++ ++ I++YP + QSAV+ L AQ++ GWVS A IE VA+ L M Sbjct: 8 PVKRLLSAQAYQLIDREIAKYPADQKQSAVMGALTIAQDEVGWVSPAVIEDVADYLSMPP 67 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFY + L VGT + VC PC LR +K E + K+ DG Sbjct: 68 IAVYEVATFYNMYNLEEVGTW-KIGVCTCLPCALREGDKAGEYLKQKLGIDFGETTPDGR 126 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIID 170 + E EC G+C +AP+ +I E +L+ +ID Sbjct: 127 FTLIETECLGSCADAPICLINDKRVESFMDNAKLDALID 165 >gi|223937080|ref|ZP_03628988.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514] gi|223894361|gb|EEF60814.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514] Length = 178 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 7/148 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +NE+++ YP R SA + L QE G+VS+ AIE +A L++ I V E+ TFY F Sbjct: 30 LNELVTHYPVKR--SASLMFLHAIQEHFGYVSKEAIEWIAKKLELQPINVYELVTFYPMF 87 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQ 141 + P G + ++VC T C L G KL + K+ H + DG S E VEC Sbjct: 88 RQEPAG-KHQIKVCRTLSCALGGSHKLHKYFCEKLGLDSHAHGVQTTKDGKYSVEFVECL 146 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169 +C AP++M +D YE +T ++ +EI+ Sbjct: 147 ASCGTAPVMMCNEDFYEGVTNQKADEIL 174 >gi|296130547|ref|YP_003637797.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM 20109] gi|296022362|gb|ADG75598.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM 20109] Length = 294 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+++RYP +R SA++P+L Q ++G+VS I A++L ++ V +ATFYTQ+ Sbjct: 38 AQEIVARYPQAR--SALLPMLHLVQSEDGYVSPRGIAFCASVLGISTAEVSAVATFYTQY 95 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P GT V VC T C + G + + E + DG ++ E VEC AC Sbjct: 96 KRHPNGTYT-VGVCTNTLCAVMGGDAIWEELSEHLGIGHDETTPDGAITLERVECNAACD 154 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+VM+ + +++ TP +++D + G+ Sbjct: 155 YAPVVMVNWEFFDNQTPASAVDVVDRLAAGE 185 >gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032] gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032] Length = 345 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 5/167 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E+ E+I+RYP R +SA++PLL Q +EG+VS A + A +L + +V Sbjct: 5 FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ P G V VC T C + G +++ + + DG ++ E Sbjct: 65 VASFYTMYKRRPTGDYL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTEDGKITLEH 123 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EC AC P++ + D ++ + P+ ++D G RP P Sbjct: 124 AECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGN----RPTP 166 >gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160] gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160] Length = 161 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S +E VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160 >gi|317401992|gb|EFV82592.1| respiratory-chain NADH dehydrogenase I [Achromobacter xylosoxidans C54] Length = 164 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATDIIEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVG + + VC PC LR E+ + + K+ +DG + E Sbjct: 63 VATFYNMFDVKPVG-KTKIAVCTNLPCALRDGERAGDYLKRKLGVDYRETTADGQFTLVE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ K +T E+L+ ++ A QG++ Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALK-AQGES 163 >gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase chain E [Burkholderia rhizoxinica HKI 454] gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 165 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 2/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP QSAV+ L AQ ++GW+S ++ VA+ L M I V E+ Sbjct: 10 SAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQEV 69 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYT ++ +PVG + + +C PC L G ++ E + K+ DG + +E Sbjct: 70 ATFYTMYETAPVG-QHKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEG 128 Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 EC GAC +AP+V++ ++ E+++++++ S Sbjct: 129 ECFGACGDAPVVLLNNHRMCSFMSREKIDQLLEELS 164 >gi|281417058|ref|ZP_06248078.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum JW20] gi|281408460|gb|EFB38718.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum JW20] Length = 165 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +NE+I +Y ++ A++P+L A+E G++ + +A L++ V + TFYTQF Sbjct: 19 LNEIIEKYKNTK--GALVPVLHEAEEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFYTQF 76 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G + +QVC T C ++G ++E + K+ SDG S E C GAC Sbjct: 77 SLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIGACG 135 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++MI D Y L P+ +E II+ + Sbjct: 136 LAPVIMINDDVYGRLVPDDIEGIIEKY 162 >gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4] gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4] Length = 256 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++RYP +R SA++PLL Q ++G ++ A IE A ++D++ V+ +ATFY+ ++ + Sbjct: 43 IVARYPQAR--SALLPLLHLVQAEDGHLTPAGIEFCALVVDLSPAEVMAVATFYSMYRRT 100 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G +++ R+ + DG ++ E +EC AC AP Sbjct: 101 PTGDYL-VGVCTNTLCAVMGGDEIYADLRDHLGLDGPGTTDDGRITLERIECNAACDYAP 159 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +VMI + ++D TP+ ++D G+ Sbjct: 160 VVMINWEFFDDQTPDSARRVVDDLRAGR 187 >gi|291280353|ref|YP_003497188.1| NADH-quinone oxidoreductase subunit E [Deferribacter desulfuricans SSM1] gi|290755055|dbj|BAI81432.1| NADH-quinone oxidoreductase, E subunit [Deferribacter desulfuricans SSM1] Length = 171 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+ + Y + A IP+L + QE G++S+ ++ +A L+M+ + + TFY QF Sbjct: 23 IDEICAEYKGRK--GATIPVLQKVQEHYGYLSKEMVDRIAENLNMSPHTIYGVITFYAQF 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +P G ++VC T C ++G ++ EV + K +SD + EEV C GAC Sbjct: 81 YTTPRGKYV-IRVCRGTACHVKGSGRISEVVTEEFGIKNGETSSDLKFTLEEVSCIGACG 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP++MI TY +LTPE+ EI ++ Sbjct: 140 MAPVIMINDKTYGNLTPEKAREIFREYA 167 >gi|218459738|ref|ZP_03499829.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Kim 5] Length = 164 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++ +G D + DL R++ ++D T Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRT 152 >gi|86359330|ref|YP_471222.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] gi|86283432|gb|ABC92495.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] Length = 172 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 5 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 63 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLGACE 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++ +G D + DL R++ ++D T Sbjct: 122 MAPVMQVGDDYHGDLDIARIDALLDRLRT 150 >gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309] gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309] Length = 236 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 1/149 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++I+RYP +SA++P+L Q +G+VS I+ ++ LD+ + +ATFYTQ++ Sbjct: 17 QIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRAEISAVATFYTQYKR 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC C + G +++ E K+ + DG ++ E +EC AC A Sbjct: 77 HPTGEYL-VGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDGKITLERIECNAACDYA 135 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ +PE +ID G+ Sbjct: 136 PVVMVNWEFFDNQSPESALAMIDDIQAGR 164 >gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1] gi|237877333|gb|ACR29666.1| ATP synthase subunit E [Burkholderia glumae BGR1] Length = 161 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ V+++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG S Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFSL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160 >gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC 17982] gi|153798275|gb|EDN80695.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++I+RYP +SA++P+L Q +G+VS I+ ++ LD+ + +ATFYTQ++ Sbjct: 16 TQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRAEISAVATFYTQYK 75 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G V VC C + G +++ E K+ + DG ++ E +EC AC Sbjct: 76 RHPTGEYL-VGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDGKITLERIECNAACDY 134 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+VM+ + +++ +PE +ID G+ Sbjct: 135 APVVMVNWEFFDNQSPESALAMIDDIQAGR 164 >gi|311744396|ref|ZP_07718198.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM 15272] gi|311312362|gb|EFQ82277.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM 15272] Length = 262 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E+ RYP +R S ++P+L Q +G V+ IE A IL ++ V +ATFYT + Sbjct: 12 LREIAGRYPEAR--SGLLPMLHLVQSVQGHVTTEGIETCAEILGLSPAEVSGVATFYTMY 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P+GT HV VC T C + G + ++E + + +DG ++ E +EC AC Sbjct: 70 KRRPMGTH-HVGVCTNTLCAVMGGDAILERLQEHLDVANDETTADGAVTLEHLECNAACD 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP++M+ + ++ TPE +++D G+ Sbjct: 129 FAPVMMVNWEFFDHQTPESAVDLVDRLRAGE 159 >gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003] gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003] Length = 161 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160 >gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1] gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1] Length = 175 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YPP + QSAV+ L Q+++GWVS + V+A+ L M I V E+ TFY + P Sbjct: 26 VAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEVTTFYNMYNQQP 85 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + + VC PC LR +K + K+ DG + ++ EC GAC +AP+ Sbjct: 86 LG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGITMGETTPDGLFTLQQCECLGACADAPV 144 Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 +++ T + E+L++++D +G Sbjct: 145 MLVNDRTMCSFMDNEKLDQLVDGLRQAEG 173 >gi|115375220|ref|ZP_01462486.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella aurantiaca DW4/3-1] gi|310818919|ref|YP_003951277.1| NADH dehydrogenase I subunit E [Stigmatella aurantiaca DW4/3-1] gi|115367782|gb|EAU66751.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella aurantiaca DW4/3-1] gi|309391991|gb|ADO69450.1| NADH dehydrogenase I, E subunit [Stigmatella aurantiaca DW4/3-1] Length = 162 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E++S YPP R + ++P L Q+ +GW I +VA L++ R E+A+FY + Sbjct: 18 ISEILSHYPPDRKSAGMLPALRLLQDLKGWCPPEGIRLVAKNLEVTPERAYEVASFYVMY 77 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L G + + VC C LRG EK++ NK+ K N T + E EC +C Sbjct: 78 HLKKPG-KYTIDVCTNLSCSLRGAEKMLAYLENKLGLKAGEANE--TFTLRETECLASCG 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP + + +D +E+LT R++E++ Sbjct: 135 TAPCLQVNEDHHENLTKARVDELL 158 >gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424] gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus taiwanensis LMG 19424] Length = 167 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VAN L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KYKLTVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 123 GECMGACGDAPVMIV 137 >gi|242399494|ref|YP_002994919.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus MM 739] gi|242265888|gb|ACS90570.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus MM 739] Length = 154 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E I Y P+ S++IPLL + QE G++ + A+E ++ L + RV +ATFY QF+ Sbjct: 6 EYIYHYEPN--PSSLIPLLQKTQETFGYLPKEALEEISRYLKVPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G +++C T C + G + + R ++ + DG ++ E V C G C A Sbjct: 64 EPLGKYV-IKICHGTACHVNGAVNISQAIREEVGIEEGQTTVDGLITLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++MI + Y LTP+++ +II G+ Sbjct: 123 PVIMINEKVYGKLTPDKVRKIIRNLKEGK 151 >gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. SIP3-4] gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688] gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. SIP3-4] gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688] Length = 157 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ +++YP R Q+AV+ L AQ+++GW+S+ + VA L + I LE Sbjct: 2 LSQESLAKIDRELTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY ++L PVG + + VC CMLR + +++ + ++ DG + +E Sbjct: 62 VASFYNMYELEPVG-QYKITVCTNISCMLRDSDVIVDHLQERLGIGFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170 EC G C AP+ I K E LT E+++ I++ Sbjct: 121 GECMGCCGGAPLFHINNKRMCEFLTKEKVDAILE 154 >gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila DSM 44928] gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila DSM 44928] Length = 228 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 3/160 (1%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + +++RYP S SA++PLL Q +EG+VS A IE A L ++ V ++TFYT ++ Sbjct: 18 DAIVARYPQS--GSALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMYK 75 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 PVG HV VC T C + G + + + + DG ++ E +EC AC Sbjct: 76 RRPVGDY-HVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHIECNAACDF 134 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 AP++ + + +D+ P++ ++D G+ GP + Sbjct: 135 APVMTVNWEFLDDMNPDKAVRVVDELRAGKEVHSTRGPAL 174 >gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 162 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 ++ FS+ES +I ++P R S ++P L Q +G+V ++ +A+ + ++ Sbjct: 2 AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D Sbjct: 60 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + +EV+C GAC P+ I YE+LTPE +E+I+ Sbjct: 119 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKIL 155 >gi|227874588|ref|ZP_03992751.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269977612|ref|ZP_06184579.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1] gi|306817872|ref|ZP_07451611.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC 35239] gi|307701384|ref|ZP_07638405.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris FB024-16] gi|227844797|gb|EEJ54943.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269934215|gb|EEZ90782.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1] gi|304649351|gb|EFM46637.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC 35239] gi|307613545|gb|EFN92793.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris FB024-16] Length = 234 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 1/158 (0%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP +SA++P+L Q ++G+VS IE+ A +L + V +ATFYTQ++ Sbjct: 18 EIINRYPEGHARSALLPMLHLVQSEDGYVSPNGIELCAELLGLNPAEVSAVATFYTQYKR 77 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC + C + G +++ + + +DG ++ E +EC AC A Sbjct: 78 RPNGEYT-VGVCVNSLCAVMGGDEIWDTVCEHLGVGHEETTADGKITLEALECNAACDYA 136 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 P++M+ + +++ TPE +++D G GP+ Sbjct: 137 PVIMVNWEFFDNQTPESAVKLVDDLRAGNPVGTTRGPK 174 >gi|297563971|ref|YP_003682944.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848420|gb|ADH70438.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I RYP R +SA++PLL Q +EG VS+A + A+ L + V +ATFYT ++ Sbjct: 33 EIIGRYP--RPRSALLPLLHLVQAEEGHVSKAGMRFCADQLGITLAEVNAVATFYTMYRR 90 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G +++ + ++ + DG ++ E VEC AC A Sbjct: 91 RP-GGDYQVGVCTNTLCAVMGGDEIFQTLKDHLGVGNNETTEDGKVTLEHVECNAACDFA 149 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P+VM+ + +++ TP+ + ++D G+ GP Sbjct: 150 PVVMVNWEFFDNQTPDTAKRLVDDLRLGRDVAPTRGP 186 >gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243] gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344] gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b] gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264] gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1] gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229] gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668] gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247] gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a] gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305] gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20] gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH] gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4] gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98] gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14] gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91] gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9] gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210] gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894] gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177] gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112] gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215] gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576] gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan 9] gi|237811586|ref|YP_002896037.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia pseudomallei MSHR346] gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei GB8 horse 4] gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b] gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399] gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1655] gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei S13] gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH] gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU] gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1710a] gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 406e] gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280] gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264] gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei K96243] gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344] gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia pseudomallei 1710b] gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264] gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1] gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229] gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 668] gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a] gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247] gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305] gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH] gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU] gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280] gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 406e] gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399] gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei S13] gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1655] gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576] gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan 9] gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia pseudomallei MSHR346] gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei GB8 horse 4] gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b] gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20] gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1710a] Length = 161 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160 >gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu] Length = 161 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E Sbjct: 2 ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 +ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 62 VATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 121 LKEGECMGACGDAPVLLVNNHKMCSFMSREKIDQLLEELS 160 >gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16] gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16] Length = 167 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEIID 170 EC GAC +AP VMI +T ++ ++L+ ++D Sbjct: 123 GECMGACGDAP-VMIVNNTRMCSFMSDDKLDALVD 156 >gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 164 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 ++ FS+ES +I ++P R S ++P L Q +G+V ++ +A+ + ++ Sbjct: 4 AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D Sbjct: 62 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + +EV+C GAC P+ I YE+LTPE +E+I+ Sbjct: 121 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKIL 157 >gi|159899602|ref|YP_001545849.1| NADH-quinone oxidoreductase subunit E [Herpetosiphon aurantiacus ATCC 23779] gi|159892641|gb|ABX05721.1| NADH-quinone oxidoreductase, E subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ ++E+++RYP R +SA++PLL AQ+ G + R +I VA ILD+ Y V E+ Sbjct: 4 EQHKAEIDEILARYPVDRKRSALLPLLYLAQDVYGRLDRDSIREVAEILDLPYTDVFEVV 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FYT F VG + + VC PC G E+L+ N++ K D + V+ Sbjct: 64 GFYTLFYNEEVG-KVVLDVCDDVPCCFCGAEELVADLENRLGIKAGETTKDKVFTLRRVK 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C AC AP++ + + + P+++E ++ Sbjct: 123 CIAACDQAPVLQANLEFHNRVLPDKVEAML 152 >gi|121534129|ref|ZP_01665954.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans Nor1] gi|121307232|gb|EAX48149.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans Nor1] Length = 166 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E++++Y + A+IP+L AQ G++S+ IE +A LD+ ++ + TFY QF Sbjct: 22 LDEILAKYQGVK--GALIPVLQEAQNAYGYLSKEVIEYIAEKLDIPVSQIYGVVTFYAQF 79 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G R ++VC T C +RG + +++ + + +D + E V C GAC Sbjct: 80 HLNPRG-RNIIRVCQGTACHVRGAKAILKALEDNLKITAGGTTADLKFTLETVACIGACG 138 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++MI DT+ LTPE + I+ + Sbjct: 139 LAPVMMINDDTHGRLTPEVIPSILAKY 165 >gi|222053574|ref|YP_002535936.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32] gi|221562863|gb|ACM18835.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32] Length = 168 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N+VI ++ ++P+L QE+ G+V + I++VA L++ ++ + TFY QF Sbjct: 20 NQVIDKF--LTLPGNLMPVLQGIQEEYGYVPKPTIDLVAERLNVYPSQIYGVLTFYAQFH 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G + ++VC T C ++G E++++ +K+H D ++E+V C GAC Sbjct: 78 LKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETTPDLRFTFEKVACLGACGM 136 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T +++EEII +S Sbjct: 137 APLAMVNDDTFGKMTVQKVEEIIADYS 163 >gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083] gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083] Length = 293 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++PLL Q +EG V+R + A++L++ V +ATFYT ++ Sbjct: 36 EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAEVTAVATFYTMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + + + DG ++ E +EC AC A Sbjct: 94 KPSGDY-QVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTLEHIECNAACDFA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP + ++D G+ Sbjct: 153 PVVMVNWEFFDNQTPATAKRLVDDLRAGR 181 >gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM 40736] gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM 40736] Length = 303 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFYT ++ Sbjct: 36 EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAEVTAVATFYTMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 94 RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACDFA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TP ++D G+ Sbjct: 153 PVVMVNWEFFDNQTPSSARRLVDDLRAGR 181 >gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a] gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) (NDH-1, chain E) [Frankia alni ACN14a] Length = 257 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 5/169 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A+ L + V Sbjct: 2 MAFSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEV 61 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C L G +++ ++ DG+++ Sbjct: 62 GAVATFYTMYKRRPVGDYL-VSVCTNLSCALLGGDEVFARVAERLGVGHDETTPDGSITL 120 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E EC AC AP++ + + Y+ + P+ I++ G+ RP P Sbjct: 121 EHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGE----RPAP 165 >gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter dehalogenans 2CP-C] gi|197124713|ref|YP_002136664.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K] gi|220919434|ref|YP_002494738.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|85777127|gb|ABC83964.1| NADH dehydrogenase subunit E [Anaeromyxobacter dehalogenans 2CP-C] gi|196174562|gb|ACG75535.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K] gi|219957288|gb|ACL67672.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 1/144 (0%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++RYPP R +A+IP L QE G++S A + A L + R E+ATFY F Sbjct: 28 ILNRYPPDRKAAAMIPALRLGQEIFGYLSPAVQRLAAERLGTSPARAEEVATFYVMFHTE 87 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P R V+VC C L G E++ E + K+ DG ++ EVEC G+C AP Sbjct: 88 PPA-RHVVEVCTNVSCCLTGGERIFEHLKKKLELANGQSTRDGRITLREVECLGSCGTAP 146 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 +++ ++ +E LT +++++I+ Sbjct: 147 AMLVDEEMHERLTIQKVDQIVGGL 170 >gi|160900608|ref|YP_001566190.1| NADH-quinone oxidoreductase subunit E [Delftia acidovorans SPH-1] gi|160366192|gb|ABX37805.1| NADH-quinone oxidoreductase, E subunit [Delftia acidovorans SPH-1] Length = 163 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+++GWVS + V+A L MA I V E+ TFY + P Sbjct: 14 VAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEVTTFYNMYNQRP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 GT + VC PC LR K + +++ K DG + ++ EC GAC ++P+ Sbjct: 74 TGTY-KLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQSECLGACADSPV 132 Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 +++ ++ E+L+E+ID +G Sbjct: 133 MLVNDRCMCSFMSNEKLDELIDGLRAAEG 161 >gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] Length = 161 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E Sbjct: 2 ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 +ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 62 VATFYTMYETSPVG-KHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160 >gi|239980148|ref|ZP_04702672.1| NADH dehydrogenase subunit E [Streptomyces albus J1074] gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074] gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074] Length = 291 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I+RYP SR SA++P+L Q +EG+V+R + A +L + V +ATFYT ++ Sbjct: 37 IIARYPDSR--SALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFYTMYRRK 94 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + + + + + DG ++ E +EC AC AP Sbjct: 95 PSGDY-QVGVCTNTLCAVMGGDAIFDELKEHLGVGNDETTEDGKITLEHIECNAACDYAP 153 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +VM+ + +++ TP+ + ++D +G T+ P Sbjct: 154 VVMVNWEFFDNQTPDSAKRLVDDLR--EGRTVEP 185 >gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001] gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001] Length = 161 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160 >gi|121604334|ref|YP_981663.1| NADH-quinone oxidoreductase subunit E [Polaromonas naphthalenivorans CJ2] gi|120593303|gb|ABM36742.1| NADH dehydrogenase subunit E [Polaromonas naphthalenivorans CJ2] Length = 165 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 4/166 (2%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S SE++ + +++YP S+ QSAV+ L Q++ G+VS + ++VA L MA I Sbjct: 2 TSSMISEQTKALFDREVAKYPTSQKQSAVMACLQIVQQERGFVSAESEKLVAEYLGMAPI 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ TFY + PVG + + VC PC LR K ++ +K+ DG Sbjct: 62 AVHEVTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGAKALQHLEHKLGVAMGETTKDGMF 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTY--EDLTPERLEEIIDAFSTGQG 177 + ++ EC GAC ++P VM+ D + ++ E+L+++ID + + Sbjct: 121 TLQQSECLGACADSP-VMLVNDIHMCSFMSNEKLDQLIDGLKSAEA 165 >gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212] gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212] Length = 158 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ I++YP R QSAV+ L AQE++GW++ + VA L M I V E Sbjct: 2 LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L P G + + +C PC L G + + K+ + DG + +E Sbjct: 62 VATFYNMYNLEPTG-KYKITICTNLPCALSGSNDSAKYIKQKLGIEFNQTTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECFGACGDAPVLLV 135 >gi|311104662|ref|YP_003977515.1| NADH-quinone oxidoreductase subunit E [Achromobacter xylosoxidans A8] gi|310759351|gb|ADP14800.1| NADH-quinone oxidoreductase, E subunit [Achromobacter xylosoxidans A8] Length = 164 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V E Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATEIIEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVG + + VC PC LR E+ + + K+ DG + E Sbjct: 63 VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGERAGDYLKRKLGVDYRGTTPDGQFTLVE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ K +T E+L+ ++ A QG++ Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALKV-QGES 163 >gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3] gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3] Length = 161 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ VI++YP + QSAV+ L AQ++ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG S Sbjct: 63 ATFYTMYELKPVG-KHKLTLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGRFSL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160 >gi|325921407|ref|ZP_08183264.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865] gi|325548165|gb|EGD19162.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865] Length = 175 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 SE++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSEKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|220929649|ref|YP_002506558.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum H10] gi|219999977|gb|ACL76578.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum H10] Length = 163 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++E+++ + ++I +Y +R A+IP+L QE G++S ++ ++ L+++ + + Sbjct: 11 TDENSLKLGKIIDKYKGTR--GALIPVLHEVQEVYGYLSEDVLKEISEKLNVSLAEIYGV 68 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFYTQF L+P G R + +C T C ++G +++E + K+ DG S + Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGEILEKFKEKLGIDVGQCTEDGKFSLDAC 127 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI D + L P+ +E I++ + Sbjct: 128 RCIGACGLAPVIMINDDVHGRLLPDDVEAILEKY 161 >gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43] Length = 161 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + K+ DG + Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATAAYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFS 173 +E EC GAC +AP++++ L + E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSLMSREKIDQLLEELS 160 >gi|134299711|ref|YP_001113207.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052411|gb|ABO50382.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1] Length = 160 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S SF + + E +RY + ++IP+L AQE G++S ++ +A L++ Y Sbjct: 4 SCCSFKDPKQKALKETFARYQGT--SGSLIPILQEAQEIYGYLSGEVMQQIARELNIPYS 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V + TFY QF L P G R +++C T C ++G ++L+E R + D Sbjct: 62 KVYGVVTFYAQFHLRPRG-RNIIRICTGTACHVKGADRLLETVREATGLEGEGTTEDLRY 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E V C GAC AP +MI +DTY LTP + I+ + Sbjct: 121 TLETVACLGACGLAPAMMINEDTYGRLTPVKALNILKQY 159 >gi|150026259|ref|YP_001297085.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum JIP02/86] gi|149772800|emb|CAL44284.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum JIP02/86] Length = 176 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYI 73 + + +E + E+ S YP + +SA++P+L Q+ E W+S + VA IL + + Sbjct: 9 TINITEALMTRIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPV 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ +FYT + P+G + + C T+PC L G E L++ +K+ K +DG Sbjct: 69 EVYEVVSFYTMYNRRPIG-KYMFEFCQTSPCCLNGTENLMDYTCDKLGVKVGEPTADGLF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 VEC GAC APM+ +G E LT +++++I Sbjct: 128 EVRGVECLGACDYAPMMQLGDFYQEHLTEAKIDQLI 163 >gi|307328625|ref|ZP_07607798.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger Tu 4113] gi|306885737|gb|EFN16750.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger Tu 4113] Length = 276 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 5/155 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFYT ++ Sbjct: 30 EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEVTAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E ++ + DG ++ E +EC AC A Sbjct: 88 KPSGDY-QVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLEHIECNAACDYA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+VM+ + +++ T E + ++D G+ T+ P Sbjct: 147 PVVMVNWEFFDNQTIESAKGLVDDLRAGR--TVEP 179 >gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens T118] gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens T118] Length = 162 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SEES + + +++YP + QSAV+ L Q++ G+VS + +VA L MA + V E Sbjct: 2 ISEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY + PVG + + VC PC LR K ++ +K+ K DG + ++ Sbjct: 62 VTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGGKALKHLEHKLDIKMGETTPDGMFTLQQ 120 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 EC GAC ++P++++ T ++ ++L++++D Sbjct: 121 CECLGACADSPVLLVNDQTMCSFMSDDKLDQLVDGL 156 >gi|226227064|ref|YP_002761170.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] gi|226090255|dbj|BAH38700.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] Length = 155 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 4/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++++RYP Q+A++P L Q+ GWVS A +E VA L++ V + TFYT + Sbjct: 10 LDKILARYPHK--QAALLPALWMLQDARGWVSEAGMEEVAAALEITPAYVKGVVTFYTMY 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144 PVGT +QVC TTPC + G E +++ + L S DG + EVEC GAC Sbjct: 68 HQHPVGTY-FIQVCTTTPCNVCGAEDVVKAFLEHTGCEDLGLTSPDGKYTVIEVECLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 A V I D E +TPE + I+ Sbjct: 127 GFATPVQINNDYVESVTPESVPRIL 151 >gi|256371184|ref|YP_003109008.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007768|gb|ACU53335.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 208 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F E A E++ YP R SAV+PL AQEQ+GW++ AI +A ++ V Sbjct: 4 FEGEFAARAEELVGLYPERR--SAVLPLCHLAQEQDGWLTPEAIRHIAELVGQTPAEVQG 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 A+FY L PVG R V +C C+LR ++L+E + DG ++ EE Sbjct: 62 AASFYDMLHLEPVG-RYVVGICTNIACLLRDGDRLLEAAEELLGVGVGGTTPDGLITLEE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 VEC C AP V + + +TP EE++ G+ D Sbjct: 121 VECVAHCDKAPAVQVNYRYFGPVTPTSFEELVGQLRRGELD 161 >gi|327191025|gb|EGE58079.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CNPAF512] Length = 169 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 AP++ +G D + L R++ ++D T G Sbjct: 124 MAPVMQVGDDYHGGLDIARIDALLDRLRTEAG 155 >gi|302543440|ref|ZP_07295782.1| NADH dehydrogenase I, E subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461058|gb|EFL24151.1| NADH dehydrogenase I, E subunit [Streptomyces himastatinicus ATCC 53653] Length = 276 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 5/155 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI+RYP SR SA++PLL Q +EG V+R I A +LD+ V +ATFYT ++ Sbjct: 30 EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGIRFCAEVLDLTTAEVTAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G V VC T C + G + + E ++ + DG ++ E +EC AC A Sbjct: 88 KASGDY-QVGVCTNTLCAVMGGDAIFEELQSHLELGNGETTEDGKVTLEHIECNAACDFA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+VM+ + +++ T ++++D G+ T+ P Sbjct: 147 PVVMVNWEFFDNQTVGSAKQLVDDLRAGR--TVTP 179 >gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 224 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 5/179 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++++RYP +SA++P+L Q ++G+VS I + A++L + V +ATFY+Q++ Sbjct: 16 QIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAVATFYSQYKR 75 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G +V VC + C + G +++ E + +DG ++ E +EC AC A Sbjct: 76 HPNGDY-NVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADGKITLERLECNAACDYA 134 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ----IDRISSAPAGGLTSLLD 202 P+VM+ + +++ TPE ++D G+ GP IS AG L+D Sbjct: 135 PVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPNQIRTFKEISHLLAGFEDGLVD 193 >gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4] gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4] Length = 307 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 6/174 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 VR A EE P+ + + A + V++RYP SR SA++PLL Q ++G ++ A +E Sbjct: 27 VRPGAREEHPPAVRARLDADA---DVVVARYPNSR--SALLPLLHLVQAEDGCITPAGVE 81 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A L + V +ATFY+ ++ P G +V VC T C + G + ++ + Sbjct: 82 FCAGRLGLTGAEVAAVATFYSMYRRDPTGDY-YVGVCTNTLCAVMGGDAILAALEAHLDL 140 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +DG ++ E +EC AC AP+VM+ + +++ PE ++DA +G Sbjct: 141 PHGGTTADGKVTLEHIECNAACDYAPVVMVNWEFFDNQNPESARSLVDALRSGD 194 >gi|226355363|ref|YP_002785103.1| NADH dehydrogenase (quinone) subunit E [Deinococcus deserti VCD115] gi|226317353|gb|ACO45349.1| putative NADH dehydrogenase (quinone), subunit E (NADH-quinone oxidoreductase, subunit E) [Deinococcus deserti VCD115] Length = 209 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 4/167 (2%) Query: 16 FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+ + V ++I RYP P +SA++PLL Q EG++S A + + + Sbjct: 1 MSYFADKQGLVADIIRRYPDSPQGRRSALMPLLREVQNAEGFISEARMAEIGALCGTTAT 60 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY+ + P G R H+QVC T C L G ++L + +++ +P DG Sbjct: 61 EVRSVLSFYSTYHTVPTG-RHHLQVCSTLMCALAGSDELWDYLVSELDVQPGEVTPDGAF 119 Query: 134 SWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179 S ++VEC G+C APM+ + YE++T + + ++ A GQ T Sbjct: 120 SVQKVECLGSCGTAPMMQVNDLGYYENVTRTKCDRLLSAMRAGQTPT 166 >gi|332669453|ref|YP_004452461.1| NADH-quinone oxidoreductase subunit E [Cellulomonas fimi ATCC 484] gi|332338491|gb|AEE45074.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas fimi ATCC 484] Length = 308 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++ +RYP R SA++PLL Q ++G+VS I A L + V +ATFYTQ++ Sbjct: 34 QIKARYPQER--SALLPLLHLVQSEDGYVSPRGIAFCAAELGLTTAEVSAVATFYTQYKR 91 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + +DG+++ E VEC AC A Sbjct: 92 HPNGDYT-VGVCTNTLCAVMGGDAIWEELSDHLGVGHDETTADGSITLERVECNAACDYA 150 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + +++ TP+ E++DA G Sbjct: 151 PVVMVNWEFFDNQTPDSAREVVDALRQG 178 >gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC 23834] gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC 23834] Length = 157 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP R +SA++ L AQ ++GW+S IE VA+ + + ++ E Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ SDG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTSDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|190893217|ref|YP_001979759.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652] gi|190698496|gb|ACE92581.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli CIAT 652] Length = 167 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 5 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 63 HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 AP++ +G D + DL R++ ++ T G Sbjct: 122 MAPVMQVGDDYHGDLDIARIDALLARLRTEAG 153 >gi|71275686|ref|ZP_00651971.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Dixon] gi|71897858|ref|ZP_00680084.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|170729493|ref|YP_001774926.1| NADH dehydrogenase subunit E [Xylella fastidiosa M12] gi|71163577|gb|EAO13294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Dixon] gi|71732413|gb|EAO34467.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|167964286|gb|ACA11296.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa M12] Length = 175 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + E+ATFY+ Sbjct: 27 IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGA 143 F+ VG R +V C C L G E L+ K+ K +DG + + E EC A Sbjct: 87 FETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEECLAA 145 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C APM++I +E LT E++++++D Sbjct: 146 CAGAPMMVINGHYHERLTKEKVDQLLDGL 174 >gi|15836912|ref|NP_297600.1| NADH dehydrogenase subunit E [Xylella fastidiosa 9a5c] gi|28198175|ref|NP_778489.1| NADH dehydrogenase subunit E [Xylella fastidiosa Temecula1] gi|71897770|ref|ZP_00679996.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|182680809|ref|YP_001828969.1| NADH dehydrogenase subunit E [Xylella fastidiosa M23] gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase, NQO2 subunit [Xylella fastidiosa 9a5c] gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa Temecula1] gi|71732325|gb|EAO34379.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|182630919|gb|ACB91695.1| NADH-quinone oxidoreductase, E subunit [Xylella fastidiosa M23] gi|307579277|gb|ADN63246.1| NADH dehydrogenase subunit E [Xylella fastidiosa subsp. fastidiosa GB514] Length = 175 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + E+ATFY+ Sbjct: 27 IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGA 143 F+ VG R +V C C L G E L+ K+ K +DG + + E EC A Sbjct: 87 FETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEECLAA 145 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C APM++I +E LT E++++++D Sbjct: 146 CAGAPMMVINGHYHERLTKEKVDQLLDGL 174 >gi|309389877|gb|ADO77757.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium praevalens DSM 2228] Length = 160 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 84/147 (57%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E+++RY + + +IP+L AQE+ G++ ++ +A L+++ +V + TFY+QF Sbjct: 16 VAEILARY--GKKERYLIPVLQEAQEEYGYLPEEVLKEIAIGLNLSLSQVYGVVTFYSQF 73 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G ++VC T C +RG E+++ ++++ + D + E V C GAC Sbjct: 74 HQEPRGNNI-IRVCMGTACHVRGGEEILNAIKDELKIEAGQTTEDLEFTLESVACIGACG 132 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++MI DT+ LTPE + EII + Sbjct: 133 LAPVIMINDDTHGRLTPESIPEIISKY 159 >gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74] gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74] Length = 286 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFYT ++ Sbjct: 30 EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 88 KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLEHIECNAACDFA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE ++D G+ Sbjct: 147 PVVMVNWEFFDNQTPESAVRLVDELRAGR 175 >gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616] gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616] gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M] gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2] gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1] gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158] gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158] gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans ATCC 17616] gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616] gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1] gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2] gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M] Length = 161 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLVNNHKMCSFMSREKIDQLLEELS 160 >gi|218510339|ref|ZP_03508217.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Brasil 5] Length = 172 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 10 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG H+Q+C CML E L+ + K D + VEC GAC Sbjct: 68 HSEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 AP++ +G D + L R++ ++ T G G D S+AP Sbjct: 127 MAPVMQVGDDYHGGLDIARIDALLAKLRTEAGQ----GAGADLASAAPG 171 >gi|94309876|ref|YP_583086.1| NADH dehydrogenase subunit E [Cupriavidus metallidurans CH34] gi|93353728|gb|ABF07817.1| NADH dehydrogenase chain E [Cupriavidus metallidurans CH34] Length = 168 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KHKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 123 GECMGACGDAPVMIV 137 >gi|189218229|ref|YP_001938871.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum infernorum V4] gi|189185087|gb|ACD82272.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum infernorum V4] Length = 171 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 7/147 (4%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++IS+YP S+ +SA +PLL Q+ G+VSR +E +A L++ I V EIATFY + Sbjct: 21 KIISQYPVSK-RSASLPLLHLWQKHFGYVSREGVEWIAQKLELEPIAVEEIATFYPMIRH 79 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLH--RNSDGTLSWEEVECQG 142 P+G + +VC T C L G +L + + N + + H + DG S E VEC Sbjct: 80 RPLG-KYQFKVCRTLSCALAGSYQLFDYIKQNCNALQEVGHHVYLSEDGQFSVEFVECLA 138 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169 AC NAP++MI ++ + D+T E+++ I+ Sbjct: 139 ACGNAPVMMINEEEWMDVTKEKIQGIL 165 >gi|302521198|ref|ZP_07273540.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78] gi|318057839|ref|ZP_07976562.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actG] gi|318078937|ref|ZP_07986269.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actF] gi|302430093|gb|EFL01909.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78] Length = 286 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFYT ++ Sbjct: 30 EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 87 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 88 KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNAACDFA 146 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE ++D G+ Sbjct: 147 PVVMVNWEFFDNQTPESAVRLVDDLRAGR 175 >gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN] gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans PsJN] Length = 161 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW++ ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMI 152 +E EC G+C +AP++++ Sbjct: 122 KEGECMGSCGDAPVMLV 138 >gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400] gi|296160633|ref|ZP_06843448.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1] gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400] gi|295889159|gb|EFG68962.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1] Length = 161 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI 152 +E EC G+C +AP++++ Sbjct: 122 KEGECMGSCGDAPVMLV 138 >gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22] gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 287 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EV++RYP SR SA++PLL Q +EG V+R + A++L + V +ATFY+ ++ Sbjct: 34 EVVARYPDSR--SALLPLLHLMQAEEGHVTRTGVRFCADVLGLTTAEVTAVATFYSMYRR 91 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E ++ + DG ++ E +EC AC A Sbjct: 92 RPSGDY-QVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGKVTLEHIECNAACDFA 150 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + +++ T + + ++D G Sbjct: 151 PVVMVNWEFFDNQTVDSAKRLVDDLRDG 178 >gi|21231956|ref|NP_637873.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767917|ref|YP_242679.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. 8004] gi|188991033|ref|YP_001903043.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. B100] gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573249|gb|AAY48659.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732793|emb|CAP50987.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris] Length = 175 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|163855991|ref|YP_001630289.1| NADH dehydrogenase subunit E [Bordetella petrii DSM 12804] gi|163259719|emb|CAP42020.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella petrii] Length = 167 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQ+++GW+S +E VAN + + I V E Sbjct: 3 LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQDEKGWLSPEVLEDVANYIGVPPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F + PVG + + VC PC LR EK + + K+ DG + E Sbjct: 63 VATFYNMFDVKPVG-KHKIAVCTNLPCALRDGEKAGDYLKRKLGIDYRETTPDGLFTLVE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC ++P++++ K +T E+L+ ++ Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVQGL 157 >gi|195400739|ref|XP_002058973.1| GJ15322 [Drosophila virilis] gi|194141625|gb|EDW58042.1| GJ15322 [Drosophila virilis] Length = 129 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 5/117 (4%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P G + H+QVC TTPC LRG +++++ C+ ++ D + EVEC GAC Sbjct: 2 FMRKPTG-KYHIQVCTTTPCWLRGSDEILDTCKKQLGIGVGETTKDNKFTISEVECLGAC 60 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQIDRISSAPAGGLTSL 200 VNAPMV I D YEDLT ++ I+ + D I PGP+ R +S P G TSL Sbjct: 61 VNAPMVSINDDYYEDLTSADMQSILGDL---KADKISPPGPRNGRFASEPKGNPTSL 114 >gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I RYP R SA++PLL Q ++ +++ A +E A L + V +A+FYT ++ Sbjct: 38 EIIGRYPDKR--SALLPLLHLVQGEDSYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRR 95 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + +DGT++ + +EC AC A Sbjct: 96 GPTGDYL-VGVCTNTLCAIMGGDAIFEELKEHLGIGNDETTADGTVTLQHIECNAACDYA 154 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE E++D+ TG Sbjct: 155 PVVMVNWEFFDNQTPESACELVDSLRTGN 183 >gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680] gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces avermitilis MA-4680] Length = 287 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++PLL Q +EG V+R ++ A+IL + V +ATFYT ++ Sbjct: 36 EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMQFCADILGLTTAEVTAVATFYTMYRR 93 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + ++ + DG ++ E +EC AC A Sbjct: 94 RPSGDY-QVGVCTNTLCAVMGGDAIFSALQDHLGVGNGETTDDGKVTLEHIECNAACDFA 152 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + +++ T + ++D G Sbjct: 153 PVVMVNWEFFDNQTVASAKRLVDDLRAG 180 >gi|333025115|ref|ZP_08453179.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071] gi|332744967|gb|EGJ75408.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071] Length = 279 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFYT ++ Sbjct: 23 EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 80 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + E + + DG ++ E +EC AC A Sbjct: 81 KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNAACDFA 139 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+VM+ + +++ TPE ++D G+ Sbjct: 140 PVVMVNWEFFDNQTPESAVRLVDDLRAGR 168 >gi|296140855|ref|YP_003648098.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola DSM 20162] gi|296028989|gb|ADG79759.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola DSM 20162] Length = 237 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP R SA++PLL Q Q+G+++ A IE A L++ V+ +ATFY+ ++ P G Sbjct: 46 RYPEPR--SALLPLLHLVQSQDGYITPAGIEFCARTLELTAADVISVATFYSMYRRGPTG 103 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V VC TT C + G + ++ + +P DG ++ E +EC AC AP+VM Sbjct: 104 -EYLVGVCTTTLCAVLGGDAILSALCEHLGIEPGGTTDDGRVTVERIECNAACDYAPVVM 162 Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175 + + ++D T ++D TG Sbjct: 163 VNWEFFDDQTVASARALVDGLRTG 186 >gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383] gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria IOP40-10] gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383] gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria IOP40-10] Length = 161 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E Sbjct: 2 ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 +ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 62 VATFYTMYELNPVG-KHKITLCTNLPCQLGPDGGAEATADYLKQKLGIGFGETTPDGKFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 121 LKEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160 >gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Streptosporangium roseum DSM 43021] gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I RYP +R SA++PLL Q ++G+VS E A +L ++ V+ ++TFYT + Sbjct: 15 AKEIIGRYPKTR--SALLPLLHLVQSEDGYVSDDGQEFCAEMLGLSKAEVVGVSTFYTMY 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P+G HV VC T C + G +++ + DG +S E +EC AC Sbjct: 73 KRKPMGDY-HVGVCINTLCAVMGGDQIWDELSEHAGVGHDETTPDGKVSLERLECNAACD 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP++M+ + +++ TP ++++D G+ + GP+ Sbjct: 132 FAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGPK 171 >gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD] gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MEX-5] gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6] gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD] gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MEX-5] gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MC40-6] Length = 161 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELNPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160 >gi|91789112|ref|YP_550064.1| NADH-quinone oxidoreductase subunit E [Polaromonas sp. JS666] gi|91698337|gb|ABE45166.1| NADH dehydrogenase subunit E [Polaromonas sp. JS666] Length = 166 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S SE++ + +++YP + QSAV+ L QE++G+VS + ++VA L M I Sbjct: 3 STMISEQTKARFDREVAKYPADQKQSAVMACLTIVQEEQGFVSAESEKLVAEYLGMTPIA 62 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+ TFY + PVG + + VC PC LR + ++ +K+ +DG + Sbjct: 63 VHEVTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGARALKHLEHKLGISMGQTTADGLFT 121 Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 ++ EC GAC ++P++++ T ++ E+L+++ID + + Sbjct: 122 LQQSECLGACADSPVMLVNDLTMCSFMSDEKLDQLIDGLKSAEA 165 >gi|302340165|ref|YP_003805371.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM 11293] gi|301637350|gb|ADK82777.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM 11293] Length = 161 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 14/172 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSV+ E +F S +F EE W N+ P +I +L + QE+ G++ R A Sbjct: 1 MSVQSEVEMKFSDSLVAFIEE---WKNK------PGN----LIMILHKVQEEFGYIPREA 47 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ ++ + TFY F+L+ G + ++QVC T C L+G E +I+ N + Sbjct: 48 AKRVASMLDVPLAKIYGVVTFYHFFKLTKPG-KHNIQVCMGTACYLKGGEDIIQELENIL 106 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S E V C G C AP+++IG + + LT E+L EI+ F Sbjct: 107 GIGVNQVTPDGQFSLEAVRCVGCCGLAPVMVIGDEVFGKLTKEQLPEILAKF 158 >gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49] Length = 161 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160 >gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes HOxBLS] gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes HOxBLS] Length = 158 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SEES + + ++++P ++ +SA I L AQ+++GW+S + +A+ L + + + E Sbjct: 3 LSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAIEE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ F PVG + + VC PC + G + + + K+H DG + E Sbjct: 63 VASFYSMFNTRPVG-KYKIAVCCNLPCEMTGSDVTAQYLKEKLHIGFGETTPDGLFTLVE 121 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170 EC GAC + P++++ K Y +T +R++ +++ Sbjct: 122 SECMGACGDGPVILVNNKKMYMRMTKDRIDRLLE 155 >gi|294624674|ref|ZP_06703344.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666773|ref|ZP_06732007.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601030|gb|EFF45097.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603434|gb|EFF46851.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 175 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 SE++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSEKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus denitrificans BC] gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans K601] gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus denitrificans BC] gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus denitrificans K601] Length = 163 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YPP + QSAV+ L Q+++GW+S+ + +A L M I V E+ TFY + P Sbjct: 14 VAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHEVTTFYNMYNQQP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LRG + + K+ DG + ++ EC GAC +AP Sbjct: 74 VG-KYKLAVCTNLPCQLRGGNQALHHLEAKLGITMGETTQDGLFTLQQCECLGACADAPT 132 Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177 +++ + + ++L++++D +G Sbjct: 133 MLVNDRHMCSFMENDKLDQLVDGLRAAEG 161 >gi|224456276|ref|ZP_03664749.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 131 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 G+++ +A L ++ + V E+ATFY + L PVG R + VC CML G +++ Sbjct: 13 GYLTDDLQTALAEYLQVSKVDVYEVATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEIL 71 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ KP DG ++ +EVECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 72 AHIEKKLAIKPGETTKDGRITLKEVECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 130 >gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054] gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424] gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4] gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3] gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315] gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184] gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054] gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424] gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184] gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4] gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia MC0-3] gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia J2315] Length = 161 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160 >gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002] gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002] Length = 161 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQ + GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KFKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNQRMCSFMSREKIDQLLEELS 160 >gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans] gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans] Length = 159 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ I+++P + QSAV+ L AQ++ GW+ ++ VA+ L M I V E Sbjct: 3 LSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC+L G E+ ++K+ +DG + E Sbjct: 63 VATFYNMYDTKPVG-KHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTLIE 121 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 122 GECMGACGDAPVMIV 136 >gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera sp. 301] gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera sp. 301] Length = 157 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 2/141 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E+A+FY + LSP Sbjct: 14 LTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAMEVASFYNMYDLSP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + +C CMLR ++++ + K+ DG +E EC G C AP+ Sbjct: 74 VG-KYKITICTNISCMLRDSDEIVNHLKTKLGVGFNEVTPDGKFCLKEGECMGCCGGAPL 132 Query: 150 VMIGK-DTYEDLTPERLEEII 169 + + D +E LT E+++ II Sbjct: 133 MHVNNTDMHEFLTVEKVDAII 153 >gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae ATCC 10712] Length = 246 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ RYP SR SA++P+L Q +EG V+R + A L + V +ATFY+ ++ Sbjct: 32 IVDRYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAEVTAVATFYSMYRRK 89 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + + E + + DG ++ E +EC AC AP Sbjct: 90 PSGDY-QVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITLEHIECNAACDFAP 148 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +VM+ + +++ TPE ++++D G+ T+ P Sbjct: 149 VVMVNWEFFDNQTPESAKKMVDDLRAGR--TVEP 180 >gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC 19624] gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC 19624] Length = 181 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+++GWVS A +A L M + V E+ TFY + P Sbjct: 25 VAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHEVTTFYNMYNQRP 84 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LR +K + K+ +DG + +E EC GAC +AP+ Sbjct: 85 VG-KFKLNVCTNLPCQLRDGQKALNHLAAKLGISKGETTADGLFTLQESECLGACADAPV 143 Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPG 183 +++ T ++ ++L+++ID G + G Sbjct: 144 MLVNDRTMCSFMSGDKLDQLIDGLKGVAGGSDSKG 178 >gi|219847962|ref|YP_002462395.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aggregans DSM 9485] gi|219542221|gb|ACL23959.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aggregans DSM 9485] Length = 230 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RY R SAV+PLL AQ+ G+++ AI VA IL++ V E+ FYT F Sbjct: 11 IESIIARYAGKR--SAVLPLLYLAQDTYGYLTDDAIREVAAILELPPTDVYEVVGFYTLF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVGT +QVC PC G E+LI + + DG + + V+C AC Sbjct: 69 YDRPVGTWV-LQVCDDVPCCYCGAEELIAALKQTLGINEEETTPDGMFTLQRVKCLAACD 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP++ + D+TPER++ ++ Sbjct: 128 RAPVLQANLNYVYDVTPERVQTLL 151 >gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 252 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 10 EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E P ++S + + V+ E+I RYP R SA++PLL Q ++ +++ A +E + Sbjct: 26 EGAPQTYSPEVRARLEVDAKEIIGRYPDKR--SALLPLLHLVQAEDSYLTPAGLEFCGDQ 83 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L ++ V +A+FYT ++ P G V VC T C + G + + + + + Sbjct: 84 LGLSGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAVFDALKEHLGIGNDET 142 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ +G Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSG 190 >gi|166712610|ref|ZP_02243817.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzicola BLS256] gi|289665177|ref|ZP_06486758.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667376|ref|ZP_06488451.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325915543|ref|ZP_08177854.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937] gi|325538259|gb|EGD09944.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937] Length = 175 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|285017796|ref|YP_003375507.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e) (ndh-1, chain e) (nuo5) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473014|emb|CBA15519.1| probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein [Xanthomonas albilineans] Length = 175 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLSKFPPERKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLVAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC C APM++I +E LT ++++ ++D Sbjct: 138 REEECLAGCAGAPMMVINGHYHEHLTKDKVDALLDGL 174 >gi|226944921|ref|YP_002799994.1| NADH dehydrogenase subunit E [Azotobacter vinelandii DJ] gi|226719848|gb|ACO79019.1| NADH-ubiquinone oxidoreductase, chain E [Azotobacter vinelandii DJ] Length = 164 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + Y R +A I L Q+Q GWV AI + IL + Sbjct: 5 IQTDRFVLSETERSAIEHETHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEILGI 62 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ R K+ P D Sbjct: 63 PASDVEGVATFYSQIFRVPVG-RHVIRVCDSMTCFIGGHETVLAALRQKLGIVPGQTTRD 121 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VMI DT+ +LTPE +E++++A+ Sbjct: 122 GRFTLLPVCCLGNCDKAPAVMIDDDTFGNLTPEGIEQLLEAY 163 >gi|303239627|ref|ZP_07326152.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus CD2] gi|302592798|gb|EFL62521.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus CD2] Length = 164 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E+IS+Y +R A+IP+L AQE G++ + ++ L++ V + TFYTQF Sbjct: 19 LQEIISKYKDTR--GALIPVLHEAQEVYGYLPIEVQKKISEGLNVPLAEVYGVVTFYTQF 76 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G + + VC T C ++G ++++ + K+ + + DG S + C GAC Sbjct: 77 SLNPKG-KYKISVCMGTACYVKGSGQILDKFKEKLGLEVGQCSEDGMFSLDACRCIGACG 135 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+VMI D Y L P+ +E II + Sbjct: 136 LAPVVMINDDVYGRLVPDDIEGIIKKY 162 >gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 240 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 1/160 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ SRYP +SA+IP+L Q ++G+V+ I + A L + V +ATFY+QF Sbjct: 32 IEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTLAEVSAVATFYSQF 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G HV VC C + G +++ + + DG +S E +EC AC Sbjct: 92 RRHPAG-EYHVGVCTNALCAVMGGDEIWQAVAEHTGLGNDETSEDGRISLERIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP+VM+ + +++ TP +++ G+ GP+ Sbjct: 151 YAPVVMVNWEFFDNQTPASAVDMVSRLERGEDVAPTRGPE 190 >gi|123446843|ref|XP_001312168.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein [Trichomonas vaginalis G3] gi|55793665|gb|AAV65813.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Trichomonas vaginalis] gi|121894006|gb|EAX99238.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein [Trichomonas vaginalis G3] Length = 201 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIR 74 F FS++S V+ ++++YP ++A IPLL Q E G+++ ++ ++ I+ + R Sbjct: 25 FKFSDQSK--VDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGR 82 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTL 133 V E A FY+ F+ P V+VC C L G + + E + S DG Sbjct: 83 VHETACFYSMFRFQPPNNHI-VEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDGQF 141 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EEVEC GAC NAP++++ Y++LT E + II+ G+ Sbjct: 142 TLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGK 184 >gi|148266250|ref|YP_001232956.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter uraniireducens Rf4] gi|146399750|gb|ABQ28383.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] Length = 168 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 85/147 (57%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N++I ++ ++P+L Q++ G++ R I++VA L++ ++ + TFY QF Sbjct: 20 NQIIDKF--LTLPGNLMPVLQGIQDEYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G + ++VC T C ++G E++++ +K+H + D ++E+V C GAC Sbjct: 78 LKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETSPDLRFTFEKVACLGACGM 136 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T +++E II +S Sbjct: 137 APLAMVNDDTFGKMTVQKVEGIIADYS 163 >gi|329914960|ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] gi|327545010|gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] Length = 159 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE + ++ +S++P + QSAV+ L AQ++ GW+S ++ +A+ L MA I V E Sbjct: 3 LSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A FY + SP G + + VC PC L G EK + K+ +DG + E Sbjct: 63 VAAFYEMYNTSPTG-KFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTLRE 121 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 122 GECMGACGDAPVMLV 136 >gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 252 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 10 EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E P+S+ + + V+ E++ RYP R SA++PLL Q Q+ +++ A +E Sbjct: 26 EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +A+FYT ++ P G V VC T C + G + + + + + Sbjct: 84 LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIDNDET 142 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ G+ Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGE 191 >gi|21243428|ref|NP_643010.1| NADH dehydrogenase subunit E [Xanthomonas axonopodis pv. citri str. 306] gi|78048405|ref|YP_364580.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924679|ref|ZP_08186117.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118] gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78036835|emb|CAJ24528.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544885|gb|EGD16230.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118] Length = 175 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|229821705|ref|YP_002883231.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM 12333] gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM 12333] Length = 283 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 3/148 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ RYP R SA++PLL Q ++ +VS A I + A++L + V +ATFYTQ++ Sbjct: 23 ILERYPEQR--SALLPLLHLVQAEDSYVSPAGIALCADLLGLTNAEVSAVATFYTQYKRR 80 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G R V VC T C + G +++ + ++ DG ++ E +EC AC AP Sbjct: 81 PNG-RYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQDGAITLERIECNAACDYAP 139 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 ++M+ + +++ TP ++++A + Q Sbjct: 140 VLMVNWEFFDNQTPTSAVDLVEALAADQ 167 >gi|317057599|ref|YP_004106066.1| NADH-quinone oxidoreductase subunit E [Ruminococcus albus 7] gi|315449868|gb|ADU23432.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 7] Length = 163 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F + E + EVI+++ ++P L AQ G++ +++A+ L ++ V Sbjct: 9 FQGTPEQEAQLKEVIAKHHDQ--PGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSEV 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S Sbjct: 67 FGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFSI 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++++ +D Y L PE++ +I+D++ Sbjct: 126 DSCRCVGACGLAPVMLVDEDVYGKLKPEQVAKILDSY 162 >gi|108760187|ref|YP_629346.1| NADH dehydrogenase I subunit E [Myxococcus xanthus DK 1622] gi|108464067|gb|ABF89252.1| NADH dehydrogenase I, E subunit [Myxococcus xanthus DK 1622] Length = 162 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E+IS YPP R + ++P L QE +GW+ + +VA L++ R +E+A+FY + Sbjct: 18 IAEIISHYPPDRKSAGMLPALRLLQEIKGWLPPEGLRLVAKHLEVTPERAMEVASFYVMY 77 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L G + VC C L G EK++ K+ K N TL E EC +C Sbjct: 78 HLKKPGKYV-IDVCTNLSCSLWGAEKMLAYLEEKLGLKAGEANEKFTL--RETECLASCG 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP + I +D +E LT +L+ I+ S Sbjct: 135 TAPCLQINEDHHESLTQAKLDAILAKLS 162 >gi|297570900|ref|YP_003696674.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium haemolyticum DSM 20595] gi|296931247|gb|ADH92055.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I+RYP SR SA++PLL Q +G+ S I +VA+IL + +V +ATFY+Q++ Sbjct: 20 IIARYPQSR--SAIMPLLHLVQSVDGFCSPRGITLVADILGLTRAQVSAVATFYSQYRRH 77 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G +V VC C + G + + + + DG ++ E++EC C AP Sbjct: 78 PNG-EYNVGVCTNALCAVMGGDLIWDELSEYVGVGHDETTQDGKITLEQLECNAGCDYAP 136 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 +VM+ + +++ TPE ++I+D G GP+ Sbjct: 137 VVMVNWEFFDNQTPETAKKIVDDIRAGHDIHPTRGPE 173 >gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium ATCC 25291] Length = 252 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 10 EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E P+S+ + + V+ E++ RYP R SA++PLL Q Q+ +++ A +E Sbjct: 26 EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +A+FYT ++ P G V VC T C + G + + + + + Sbjct: 84 LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIGNDET 142 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ G+ Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGE 191 >gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649] gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649] Length = 417 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+++YP R SA++PLL Q +G+V+ I+ A +L+++ V +ATFYTQ++ Sbjct: 38 VVAKYPQKR--SALLPLLHLVQSVDGYVTGRGIDFCAEVLELSRAEVSGVATFYTQYKRH 95 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G +++ + + DG ++ E +EC AC AP Sbjct: 96 PNGEYT-VGVCTNTLCAIMGGDEIWDSVSEHLGIGHDETTDDGKVTLERIECNAACDYAP 154 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175 +VM + +++ TPE +++D G Sbjct: 155 VVMANWEFFDNQTPESTNQLVDDLRAG 181 >gi|167629825|ref|YP_001680324.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e [Heliobacterium modesticaldum Ice1] gi|167592565|gb|ABZ84313.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e [Heliobacterium modesticaldum Ice1] Length = 191 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IPLL QE G++ A+E +A L + +V +ATFY QF +P G R ++V Sbjct: 58 RGALIPLLQGVQEIYGYLPGPAMERIARTLRLPAAQVYGVATFYAQFHFAPRG-RHVIRV 116 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG ++ E R ++ + +D + E V C GAC AP++MI DT+ Sbjct: 117 CLGTACHVRGGARIFEALRRQLGVEDGGTTADLRYTLESVACIGACGLAPVIMIDDDTHG 176 Query: 159 DLTPERLEEIIDAF 172 LTPE L I+ + Sbjct: 177 RLTPESLPGILARY 190 >gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis] gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis] Length = 190 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 + F F++E+ V +++ YP + Q A++PLL AQ Q GW+ +A+ VA +L + Sbjct: 39 YDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKI 98 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 ++ E A +YT F + P G V VC +TPC LRG + L++ C + +P + D Sbjct: 99 DPMQAYETAKYYTMFHMKPRGMYV-VSVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKD 157 Query: 131 GTLSWEEVECQGAC 144 S + C GAC Sbjct: 158 MQFSLKVDCCLGAC 171 >gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104] gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104] Length = 252 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 10 EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E P+S+ + + V+ E++ RYP R SA++PLL Q Q+ +++ A +E Sbjct: 26 EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +A+FYT ++ P G V VC T C + G + + + + + Sbjct: 84 LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIGNDET 142 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ G+ Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGK 191 >gi|326204153|ref|ZP_08194013.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325985664|gb|EGD46500.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 163 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS--RAAIEVVANILDMAYIRVLEIATFYT 83 V E+++RY S+ +I +++ Q G S + VA LDM RV + TFY+ Sbjct: 11 VKEILNRYGNSK--DNLIQVMLELQNISGTNSLPHDWVVFVAEALDMPVSRVYSVITFYS 68 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + V+VC + PC + G + ++++ K+ KP DG + + C GA Sbjct: 69 MFGNEPRG-KYLVEVCKSGPCHVSGAKTVLQLIEEKLGLKPGETTEDGVFTLIQSSCFGA 127 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C AP + IG+ Y +LT E+L EI+D++ GQ Sbjct: 128 CDIAPAIKIGEKVYGNLTAEKLTEIVDSYREGQ 160 >gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN] gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN] Length = 163 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YPP + QSAV+ L Q++ G+VS A+ +A L M I V E+ TFY + P Sbjct: 14 VAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHEVTTFYNMYNQQP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC+LR K +E K+ DG + ++ EC GAC +AP+ Sbjct: 74 VG-KYKLNVCTNLPCLLRDGGKALEHLEQKLGISMGETTPDGLFTLQQCECLGACADAPV 132 Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177 +++ ++ + ++L++++D+ + Sbjct: 133 MLVNDRNMCSFMGNDKLDQLVDSLRAAEA 161 >gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae EF01-2] gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae EF01-2] Length = 165 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE + +++YP + QSAV+ L Q+++G VS + +VA+ L MA I V E Sbjct: 2 MSEATLARFAREVAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC LRG + ++ K+ DG + + Sbjct: 62 VATFYNMYNRQPVG-QYKINVCTNLPCQLRGGRQALQHLERKLALASGGTTDDGLFTLQS 120 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 EC GAC +AP++++ T + ++L++++D Sbjct: 121 CECLGACADAPVLLVNDRTMCSFMDGDKLDQLVDGL 156 >gi|197120283|ref|YP_002140710.1| NADH dehydrogenase I subunit E [Geobacter bemidjiensis Bem] gi|197089643|gb|ACH40914.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem] Length = 169 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 83/147 (56%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N +I +Y ++P+L Q+ G++ R I++VA L++ ++ + TFY QF Sbjct: 20 NHIIDKY--LTLPGNLMPVLQGIQDSYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G R ++VC T C ++G E++ E ++ ++D ++E+V C GAC Sbjct: 78 LKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACLGACGM 136 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DTY +T ++++EII+ ++ Sbjct: 137 APLAMVNDDTYGKMTVQKVDEIIETYN 163 >gi|58582855|ref|YP_201871.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624720|ref|YP_452092.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577692|ref|YP_001914621.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427449|gb|AAW76486.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368660|dbj|BAE69818.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522144|gb|ACD60089.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 175 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTVDGRVYLK 137 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|313672281|ref|YP_004050392.1| NADH dehydrogenase subunit e [Calditerrivibrio nitroreducens DSM 19672] gi|312939037|gb|ADR18229.1| NADH dehydrogenase subunit E [Calditerrivibrio nitroreducens DSM 19672] Length = 164 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+ +Y + A IP+L + QE G++S+ IE + L+M+ + + TFY QF Sbjct: 16 IDEICEKYKGKK--GATIPVLQQVQEHYGYLSKEMIERIGENLNMSPHTLYGVLTFYAQF 73 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +P G ++VC T C ++G ++ EV + + D + EEV C GAC Sbjct: 74 YTTPRGKYV-IRVCRGTACHVKGSGRISEVVFEEFGIRNGETTPDIKFTLEEVSCIGACG 132 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP++MI TY +LTPE+ I ++ Q Sbjct: 133 MAPVIMINDKTYGNLTPEQARSIFKEYAQKQ 163 >gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42] gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY] gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42] gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY] Length = 163 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+++GWVS + V+A L M I V E+ TFY + P Sbjct: 14 VAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHEVTTFYNMYNQQP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LR + + K+ +DG + ++ EC GAC +AP+ Sbjct: 74 VG-KYKLAVCTNLPCQLRRGQDALHHLEKKLGISMGETTADGLFTLQQCECLGACADAPV 132 Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177 +++ ++ + ++L++++D +G Sbjct: 133 MLVNDRNMCSFMDDDKLDQMVDGLRAAEG 161 >gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 157 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP R +SA++ L AQ ++GW++ IE VA+ + + ++ E Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6] gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6] Length = 175 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L AQ+ GWVS A + +A+ L M I V E+ TFY + P Sbjct: 25 VAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHEVTTFYNMYNQQP 84 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC+LR + +E K+ + +DG + ++ EC GAC +AP+ Sbjct: 85 VG-QFKLNVCTNLPCLLRNGQAALEHLCQKLGVEDGGTTADGLFTVQKCECLGACADAPV 143 Query: 150 VMIG-KDTYEDLTPERLEEIIDAF 172 +++ + ++ ++L++++D Sbjct: 144 MLVNDRQMISYMSHDKLDQLVDTL 167 >gi|291298802|ref|YP_003510080.1| NADH-quinone oxidoreductase E subunit [Stackebrandtia nassauensis DSM 44728] gi|290568022|gb|ADD40987.1| NADH-quinone oxidoreductase, E subunit [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +++EE E++ RYP + +SA++P+L Q Q+G++++ I A ++ + +V Sbjct: 1 MAYTEEFRAQAREIMERYPEGKQRSALLPMLHLVQSQDGYITQDGIAFCAEMIGITKAQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ++TFYT ++ P G V VC T C + G +K+ + R + DG ++ Sbjct: 61 AAVSTFYTMYKREPTGDYL-VSVCTNTLCDVMGGQKVFDALREYLGVDHDETTGDGKITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 E EC AC AP++ + + ++ P+ ++ G+ RP P Sbjct: 120 EHAECLAACDYAPVMTVNYEFFDKTNPDEAVQLAKNLRNGE----RPTP 164 >gi|325681308|ref|ZP_08160837.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8] gi|324106999|gb|EGC01286.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8] Length = 163 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F + E + EVI+++ ++P L AQ G++ +++A+ L ++ V Sbjct: 9 FQGTPEQEAQLKEVIAKHHDQ--PGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSEV 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S Sbjct: 67 FGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFSI 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++++ +D Y L P+++ +I+D++ Sbjct: 126 DSCRCVGACGLAPVMLVDEDVYGKLKPDQVAKILDSY 162 >gi|78224541|ref|YP_386288.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter metallireducens GS-15] gi|78195796|gb|ABB33563.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] Length = 173 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N VI +Y ++P+L Q++ G+V + I++VA L++ ++ + TFY QF Sbjct: 25 NHVIDKY--LTLPGNLMPVLQGIQDEYGYVPKPTIDLVAERLNVYPSQIFGVLTFYAQFH 82 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G R ++VC T C ++G +++E +K+ + D ++E+V C GAC Sbjct: 83 LKPRG-RYIIRVCVGTACHVQGAPRIVETFFDKLGISHAETSPDLRYTFEKVACLGACGM 141 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T +++EEII ++ Sbjct: 142 APLAMVNDDTFGKMTVQKVEEIIAEYN 168 >gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus M045] gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus M045] Length = 298 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+RYP SR SA++P+L Q +EG+V+R + A +L + V +ATFY+ ++ Sbjct: 35 EIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMRFCAELLGLTTAEVTAVATFYSMYRR 92 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G V VC T C + G + + + + DG ++ E +EC AC A Sbjct: 93 RPSGDY-QVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDGKVTLEHIECNAACDFA 151 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+VM+ + +++ T E + ++D G Sbjct: 152 PVVMVNWEFFDNQTVESAKRLVDELREG 179 >gi|193215668|ref|YP_001996867.1| NADH-quinone oxidoreductase subunit E [Chloroherpeton thalassium ATCC 35110] gi|193089145|gb|ACF14420.1| NADH-quinone oxidoreductase, E subunit [Chloroherpeton thalassium ATCC 35110] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P+ F + + SRYP + ++AV+ L AQ + GW+S A+++VA L+M Sbjct: 34 NPAEIVFDDADLQQIEAYKSRYP--KKEAAVMRTLWLAQTKFGWLSEDALKLVAKTLEMP 91 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +A+FYT + P G + H+ VC C L G ++ + K + +DG Sbjct: 92 PADVFGVASFYTMYFKKPKG-KTHLAVCTNISCSLCGGYEIYNYLKEKFGLENGDVTADG 150 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEII 169 LS EE EC G+C AP + + Y E+LT E+LE + Sbjct: 151 KLSLEEAECLGSCGTAPAMQVNNGEYVENLTVEKLEAFL 189 >gi|188584738|ref|YP_001916283.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349425|gb|ACB83695.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 162 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E++++Y + A+I L + QE G++ ++ VA DM +V +ATFY QF Sbjct: 18 LEEILAQYKNEK--GALITALQKVQEFYGYLPEEGMQKVAEAFDMPESKVFGVATFYAQF 75 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G ++VC T C +RG EK++ +++ +P D + E V C G C Sbjct: 76 HLQPRGEWV-IRVCTGTACHVRGAEKIMNKLIEELNIEPGETTEDLKFTLEPVACIGCCG 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP++M+ +T+ L P+++ EI+D + Sbjct: 135 LAPVIMVNDNTHGRLVPDQIPEILDKYK 162 >gi|171914656|ref|ZP_02930126.1| NADH dehydrogenase (ubiquinone), E chain [Verrucomicrobium spinosum DSM 4136] Length = 166 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 10/155 (6%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++EVI+ YP S+ +SAV+PLL Q + +++ A+ VA L + I+VLE+ TFY F Sbjct: 13 IDEVITHYPVSK-RSAVLPLLHLMQHEYRYITDDAVNWVAAKLGLQPIQVLEVVTFYPGF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCR-------NKIHQKPLHRNSDGTLSWEE 137 + S G + H++VC T C + G +L+E +C+ + H P+ ++DG S E Sbjct: 72 RQSAPG-KFHIRVCRTLSCAMAGSYELMESLCKAADIDRSHVDHHHPIAVSADGKYSIEF 130 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC +C P+ M+ D +E + P+ E++ + Sbjct: 131 AECLASCGFGPVCMVEDDFHESVKPQAAAELLKQY 165 >gi|302342221|ref|YP_003806750.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM 2075] gi|301638834|gb|ADK84156.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM 2075] Length = 154 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A+ ++E+I RYP +I LL Q G++S A++ V + + R +ATFY Sbjct: 5 AVQLDELIDRYPAK--PEYLIFLLQDIQAAYGYISPEAMDRVCDHAGVPKSRAYSVATFY 62 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L P G ++VC T C L+G ++L + K+ KP + D S E V C G Sbjct: 63 QSFSLKPKGEH-KIRVCMGTACHLKGAQRLADAVERKLGIKPDETSPDLKFSLEAVHCLG 121 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170 AC AP+V++ + + TP +L++++D Sbjct: 122 ACAMAPVVVVDDEYHAGATPGKLDKLLD 149 >gi|154498759|ref|ZP_02037137.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC 29799] gi|150272149|gb|EDM99353.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC 29799] Length = 164 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +P+L AQE G++ ++A LD+ V +A+FY QF ++P G R + VC Sbjct: 32 GSTMPVLQAAQEIFGYLPEEVQIMIAEGLDIPLSEVYGVASFYAQFSMNPKG-RYQISVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ K+ +P DG S + C GAC AP++M+G D Y Sbjct: 91 LGTACYVKGAADILAAVEKKLGIRPGSITPDGKFSLDACRCVGACGLAPVMMVGSDVYGR 150 Query: 160 LTPERLEEIIDAF 172 LTP+++ I+D + Sbjct: 151 LTPDQVGPILDKY 163 >gi|323702551|ref|ZP_08114214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532525|gb|EGB22401.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 161 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E++++Y A+IP+L +AQE G++ I+ +A L + RV +ATFY QF L Sbjct: 19 ELLTKYKEQP--GALIPVLQQAQEIFGYLGPEVIDQIAGELKIPPARVYGVATFYAQFHL 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R ++VC T C +RG K++E + + +P + D + E V C GAC A Sbjct: 77 QPRG-RHVIKVCQGTACHVRGGAKVLEAIKKQTGLEPGETSKDLRYTLETVACLGACGLA 135 Query: 148 PMVMIGKDTYEDLTPER 164 P++M+ +DT L+PE+ Sbjct: 136 PVMMVNEDTQGQLSPEK 152 >gi|289641423|ref|ZP_06473587.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca glomerata] gi|289508759|gb|EFD29694.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca glomerata] Length = 270 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 5/167 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +EE+ ++I+RYP +SA++PLL Q ++G V+ +E A++L + V Sbjct: 3 LTEETRAAAADIIARYPSGHSRSALLPLLHLVQAEDGCVTSEGVEFCASLLGITQAEVSA 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ PVG V VC C L G E++ ++ +DGT++ E Sbjct: 63 VATFYTMYKRRPVGDWL-VSVCTNLSCALLGGEEVYARLSQELGVGHDQTTADGTITLEH 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EC AC AP++ + + ++ + P+ EI++A G+ RP P Sbjct: 122 AECLAACDYAPVLTVNYEFFDQVDPQSASEIVEALRRGE----RPAP 164 >gi|331699308|ref|YP_004335547.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326953997|gb|AEA27694.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 273 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 12/171 (7%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S S+ E + E+I+RYP SR SA++P+L Q EG VS+ I A +LD+ Sbjct: 34 SPSYDEVTRQRAKEIIARYPQSR--SALLPMLHLVQSVEGHVSQEGIRFCAELLDLTTAE 91 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPLHR----- 127 V +ATFYT ++ +P G V VC T C G + + + ++ +PL Sbjct: 92 VSAVATFYTMYKRTPCGEHL-VSVCTNTLCAALGGDDIYARLQARLGTEDRPLGHEETAG 150 Query: 128 --NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + G+++ E EC AC AP++ + + +++ T E EE++DA G+ Sbjct: 151 EPGTPGSITLEHAECLAACDLAPVIQVNYEYFDNQTVESAEELVDALRRGE 201 >gi|332285013|ref|YP_004416924.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7] gi|330428966|gb|AEC20300.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7] Length = 164 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 2/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++P + QSA++ L AQE++GWVS I VA L++ I V E Sbjct: 3 LSEQAYQKIDRELTKFPSDQQQSAIMAALTIAQEEKGWVSTEVIADVAAYLNVPAIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F VG R + VC PC L K E + K+ DG + E Sbjct: 63 VATFYNMFNTHQVG-RFKITVCTNLPCALSDGVKAAEYVKQKLGIDFHETTPDGLFTLME 121 Query: 138 VECQGACVNAP-MVMIGKDTYEDLTPERLEEIID 170 EC GAC +AP M+M + ++ E+++ ++D Sbjct: 122 GECMGACGDAPVMLMNNRHMCVRMSSEKIDAMLD 155 >gi|332526751|ref|ZP_08402853.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Rubrivivax benzoatilyticus JA2] gi|332111154|gb|EGJ11186.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Rubrivivax benzoatilyticus JA2] Length = 161 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FSE + ++++P + QSAV+ L Q ++G VS+ A E +A L M I V Sbjct: 1 MNFSEATLARFAREVAKFPADQKQSAVMACLAIVQHEQGHVSQEAEEAIAAYLGMPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY + VG + + VC PC LR E ++ K+ +P DG + Sbjct: 61 HEVTTFYNMYNQRRVG-KYKLNVCTNLPCQLRHGEHALDHVCKKLGVEPYGTTEDGLFTV 119 Query: 136 EEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAF 172 + EC GAC +AP++++ ++ ++ ERL+E+I+ Sbjct: 120 QPSECLGACADAPVMLVNDREMLSFMSDERLDELIETL 157 >gi|169629224|ref|YP_001702873.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium abscessus ATCC 19977] gi|169241191|emb|CAM62219.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium abscessus] Length = 247 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 AI E++ RYP R SA++PLL Q ++G+V+ A IE A +++ V +A+FY Sbjct: 34 AIDAKEILDRYPSRR--SALLPLLHLVQSEDGYVTTAGIEFCARQVELTSAEVTAVASFY 91 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + ++ P G V VC T C + G + ++ ++ +P DG ++ E +EC Sbjct: 92 SMYRREPTGDYL-VGVCTNTLCAVLGGDAILARLAGELGVRPGGTTEDGKVTLEHIECNA 150 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C AP++M+ + +++ TP+ ++ G Sbjct: 151 GCDYAPVLMVNWEFFDNQTPDGAAALVQGLRRGH 184 >gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC BAA-1200] gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC BAA-1200] Length = 157 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + ES ++ +++YP R +SAV+ L AQ ++GW++ IE VA+ + +A + E Sbjct: 2 LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLIE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815] gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum STM815] Length = 161 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L QE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ PVG + + +C PC L G + E + K+ DG + Sbjct: 63 ATFYTMYETKPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGRFTL 121 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160 >gi|253702591|ref|YP_003023780.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] gi|251777441|gb|ACT20022.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 168 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 83/147 (56%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N +I +Y ++P+L Q+ G++ R I++VA L++ ++ + TFY QF Sbjct: 20 NHIIDKY--LTLPGNLMPVLQGIQDAYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G + ++VC T C ++G E++ E ++ ++D ++E+V C GAC Sbjct: 78 LKPRG-KYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACLGACGM 136 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DTY +T ++++EII+ ++ Sbjct: 137 APLAMVNDDTYGKMTVQKVDEIIETYN 163 >gi|227488704|ref|ZP_03919020.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51867] gi|227542297|ref|ZP_03972346.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51866] gi|227091365|gb|EEI26677.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51867] gi|227181897|gb|EEI62869.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51866] Length = 245 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + ++ + ++ + E+ RYP QSA++P+L Q +G VS + +A++L Sbjct: 21 DLADTTTNLTDADVADLKELAGRYP--NPQSALLPMLHLVQSVDGKVSGEGVRRIASLLH 78 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRN 128 M +V+ +ATFY+ + VG V VC + C G + + + + + Sbjct: 79 MTEAQVIGVATFYSMYHTHEVGKHL-VGVCTSALCATMGGDIIYDAVKRHLELDGEEDTT 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 SDG + E +EC AC AP++M+ + +++TP++ EI+D GQ + GP+I Sbjct: 138 SDGMFTLERIECNAACDFAPILMLNWEYMDNMTPKKAIEILDKLRDGQEVSSTRGPKI 195 >gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum] Length = 627 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+PLL E++ ++S A + ++ + ++ +L I TFY F P G + V+V Sbjct: 27 EQAVLPLLHYYMEKKNYISEADVSRISQLTGLSVSDILGIGTFYQHFVFHPTGKNS-VRV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C TTPC+ RG +K E + DG + +C G C AP I D Y Sbjct: 86 CLTTPCLFRGGKKTFETLSKSLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 145 Query: 159 DLTPERLEEIIDAFSTGQ 176 + PE++ I+D + G+ Sbjct: 146 GIPPEKIPSILDEYRKGK 163 >gi|302523881|ref|ZP_07276223.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4] gi|302432776|gb|EFL04592.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4] Length = 287 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 16/181 (8%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P++ F ++ E+I+RYP SR SA++P+L Q +G+VS+ I A LD+ Sbjct: 46 PAADVFDADTHREAKEIIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCARHLDLTD 103 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPL-HRNS 129 V +ATFYT ++ P G V VC T C G + + + + +KPL H + Sbjct: 104 AEVTAVATFYTMYKRRPCGEHL-VSVCTNTLCAALGGDDIYRKLQTHLGSAEKPLGHEET 162 Query: 130 DGT------LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 GT ++ E EC AC P++ + + +++ TPE+ ++DA G+ +P Sbjct: 163 AGTPGEPGSITLEHAECLAACDLGPVLQVNYEYFDNQTPEQAVALVDALQAGK----KPA 218 Query: 184 P 184 P Sbjct: 219 P 219 >gi|39995451|ref|NP_951402.1| NADH dehydrogenase I subunit E [Geobacter sulfurreducens PCA] gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA] gi|298504450|gb|ADI83173.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400] Length = 173 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N VI +Y ++P+L Q++ G+V R I++VA L++ ++ + TFY QF Sbjct: 25 NHVIDKY--LTLPGNLMPVLQGIQDEYGYVPRPTIDLVAERLNVYPSQIFGVLTFYAQFH 82 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G R ++VC T C ++G ++++ K+ D ++E+V C GAC Sbjct: 83 LKPRG-RFIIRVCVGTACHVQGAPRIVDTFFEKLGIGHAETTPDLRYTFEKVACLGACGM 141 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T +++EEII ++ Sbjct: 142 APLAMVNDDTFGKMTVQKVEEIIAEYN 168 >gi|326201388|ref|ZP_08191260.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens DSM 2782] gi|325988956|gb|EGD49780.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens DSM 2782] Length = 164 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 84/154 (54%), Gaps = 3/154 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++E+++ + ++I +Y +R A+IP+L QE G++ ++ ++ L+++ + + Sbjct: 11 TDENSLKLGKIIDKYKETR--GALIPVLHEVQEVYGYLPEDVLKEISEKLNVSLAEIYGV 68 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFYTQF L+P G R + +C T C ++G +++ + K+ DG S + Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGDILDKFKQKLGIDVGQCTEDGKFSLDAC 127 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI D + L P+ ++ I+ + Sbjct: 128 RCIGACGLAPVIMINDDVHGRLVPDDVDAILAKY 161 >gi|51244536|ref|YP_064420.1| NADH dehydrogenase subunit E [Desulfotalea psychrophila LSv54] gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxidoreductase, 24 kDa subunit [Desulfotalea psychrophila LSv54] Length = 154 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L Q + G++ A+ VA+ L + RV +ATFY QF+ +PVG + V VC Sbjct: 19 LIPILQNVQHKFGYLPEDAMREVADFLRIPESRVYGVATFYEQFRFTPVG-KTKVTVCRG 77 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG +K+I ++ K DG + E C G C AP VMI ++ +LT Sbjct: 78 TACHVRGAQKIIASVEKRLGIKEGETTEDGEYTLETAACIGCCALAPCVMINEEVEANLT 137 Query: 162 PERLEEIID 170 P+++ D Sbjct: 138 PKKMNAYFD 146 >gi|291004455|ref|ZP_06562428.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] Length = 244 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S F E+ ++I RYP SR SA++P+L Q +G VS IE A LD++ Sbjct: 7 TSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTA 64 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL-------IEVCRNKIHQKPLH 126 V +ATFYT ++ P G V VC T C G + + + V ++ P Sbjct: 65 EVSAVATFYTMYKRKPCGQHL-VSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTP-- 121 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +G+L+ E EC AC P++ + + Y++ TPE+ E++ A G+ +P P Sbjct: 122 -GEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGE----KPAP 174 >gi|256380661|ref|YP_003104321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum DSM 43827] gi|255924964|gb|ACU40475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum DSM 43827] Length = 254 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + F + + +I+RYP R SA++P+L Q EG VS A I A++LD++ Sbjct: 15 PGAVVFDQGTTDRARAIIARYPVPR--SALLPMLHLVQSVEGHVSTAGIAFCADLLDLSA 72 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHR--- 127 V +ATFYT ++ P G V VC T C G + + R+ + KPL Sbjct: 73 AEVSAVATFYTMYKRKPCGEHL-VSVCTNTLCAALGGDDIYAKLRDHLGADGKPLGHEET 131 Query: 128 ----NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + G+++ E EC AC AP+V + + +++ TP+ E++ + G+ Sbjct: 132 SGEPGAPGSVTLEHAECLAACDLAPVVQVNYEYFDNQTPDGALEMVKSLQAGE 184 >gi|42524474|ref|NP_969854.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100] gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100] Length = 159 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIR 74 F S+ V ++RY +SA+IP L AQ E G+++ I ++ ++D+ R Sbjct: 4 FKLSDSGLAAVKSELARYEAK--ESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + E+ FYT F PVG + HVQVC C L G ++ + +++ K +DG + Sbjct: 62 INEVFKFYTMFNQKPVG-KYHVQVCTNISCALEGGREMAKHICHELGVKFDQVTADGRFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPE 163 +VEC G+C APM+ + +E LTPE Sbjct: 121 VSKVECLGSCGTAPMMQVNDSYHEKLTPE 149 >gi|312878985|ref|ZP_07738785.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260] gi|310782276|gb|EFQ22674.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260] Length = 155 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +IP+L AQ G++ A++ ++ L + + + TFY QF L P G R ++V Sbjct: 22 KGGLIPILQGAQNAFGYLPAEALQTISEELTVPLAEIYGVVTFYAQFHLKPRG-RHIIRV 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG KL++ + + + D + E V C GAC AP++M+ DT+ Sbjct: 81 CRGTACHVRGSLKLLQTVKESLKVEENGTTEDLRYTLEPVACIGACGLAPVIMVDSDTHG 140 Query: 159 DLTPERLEEIIDAF 172 L PE+L+EI+D + Sbjct: 141 RLVPEKLKEILDHY 154 >gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille] gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille] Length = 159 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE++ ++ ++++PP + QSAV+ L AQ++ W+ ++ VA+ L M I V E Sbjct: 3 LSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G EK + K+ D + E Sbjct: 63 VATFYNMYNTKPVG-KFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLVE 121 Query: 138 VECQGACVNAPMVMIG 153 EC GAC +AP++++ Sbjct: 122 GECMGACGDAPVMLVN 137 >gi|134103326|ref|YP_001108987.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] gi|133915949|emb|CAM06062.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S F E+ ++I RYP SR SA++P+L Q +G VS IE A LD++ Sbjct: 4 TSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTA 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL-------IEVCRNKIHQKPLH 126 V +ATFYT ++ P G V VC T C G + + + V ++ P Sbjct: 62 EVSAVATFYTMYKRKPCGQHL-VSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTP-- 118 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +G+L+ E EC AC P++ + + Y++ TPE+ E++ A G+ +P P Sbjct: 119 -GEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGE----KPAP 171 >gi|145589230|ref|YP_001155827.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047636|gb|ABP34263.1| NADH dehydrogenase subunit E [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 168 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 2/163 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ S+++ ++ I++YP QSAV+ L+ AQ + GWVS IE VA IL+M I Sbjct: 3 TTLQLSDKTLADIHRNIAKYPAEHKQSAVMACLIAAQTEVGWVSPEVIEAVAQILEMPTI 62 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + P+G + + +C PC L E + + GT Sbjct: 63 AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAATYLKETLGIGFNETTPCGTF 121 Query: 134 SWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTG 175 + +E EC GAC ++P++++ K ++ E+++ ++ G Sbjct: 122 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAG 164 >gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1] gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+E+ ++ +++YP + QSAV+ L AQ + GW+ + +A+ + M + V E Sbjct: 3 LSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY F SPVG + + VC PC+L G E+ + K+ +DG + E Sbjct: 63 VATFYNMFNTSPVG-KHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLME 121 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 122 GECMGACGDAPVMLV 136 >gi|124266600|ref|YP_001020604.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Methylibium petroleiphilum PM1] gi|124259375|gb|ABM94369.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Methylibium petroleiphilum PM1] Length = 162 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + SE + + +++YP + QSAV+ L Q+++G VS A +A L M I V Sbjct: 1 MTLSEATKARFDREVAKYPAEQRQSAVMACLAIVQQEQGHVSADAERAIAAHLGMPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY + PVG R + VC PC LR E ++ K+ +P +DG + Sbjct: 61 HEVTTFYNMYNQQPVG-RFKLNVCTNLPCQLRDGETALQHVCKKLGVEPYGSTADGVFTV 119 Query: 136 EEVECQGACVNAPMVMIG-KDTYEDLTPERLEE 167 + EC GAC +AP++++ + +T +RL+E Sbjct: 120 QPSECLGACADAPVMLLNDRQMLSFMTEQRLDE 152 >gi|325960238|ref|YP_004291704.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium sp. AL-21] gi|325331670|gb|ADZ10732.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium sp. AL-21] Length = 158 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +NE++S Y ++ S +IPLL Q G++S +I+ V+ ++ + +ATFYTQF Sbjct: 5 LNEILSTYEGTK--SELIPLLQDVQANLGYLSEESIKDVSKFTGVSESEIYGVATFYTQF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +PVG + H+ VC T C ++G ++IE + K D S E V C G C Sbjct: 63 RFTPVG-KKHIMVCKGTACHVKGAPQIIEGIERHLGIKEGEVTFDMEYSLESVGCLGCCA 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP MI D ++T + +++I Sbjct: 122 LAPCAMINDDVESNMTLKDVKKIF 145 >gi|146296865|ref|YP_001180636.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410441|gb|ABP67445.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 160 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGGTTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L PE +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLAPEDIENILSRY 160 >gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC 13950] Length = 252 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 5/169 (2%) Query: 10 EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E P+S+ + + V+ E++ RYP R SA++PLL Q Q+ +++ A +E Sbjct: 26 EGAPTSYPPEVRARLEVDAKEIMGRYPEKR--SALLPLLHLVQAQDSYLTPAGLEFCGEQ 83 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L ++ V +A+FYT ++ P G V VC T C + G + + + + + Sbjct: 84 LGLSGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAVMGGDAIFDALKEHLGIGNDET 142 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +DG+++ + +EC AC AP+VM+ + +++ T E E++D+ +G+ Sbjct: 143 TADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESARELVDSLRSGE 191 >gi|220931028|ref|YP_002507936.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] gi|219992338|gb|ACL68941.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] Length = 167 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 VNE+I ++ + QS +IP+L Q++ ++ + +A ++D++ V +ATFY QF Sbjct: 14 VNEIIEKH--GKDQSKLIPILQEVQKEYRYLPEEILTYIATVMDLSPATVYGVATFYAQF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144 L P G + + VC T C + G ++ R K++ + +D + + E V C GAC Sbjct: 72 SLDPKG-KYVINVCDGTACHVSGSLPVLNAIRKKLNLEDGKFTTDDLMFTVETVSCLGAC 130 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170 AP+V I Y +TPE +E IID Sbjct: 131 GLAPVVTINGKVYGKMTPEAIEVIID 156 >gi|258593431|emb|CBE69770.1| NADH-quinone oxidoreductase subunit E 2 (NADH dehydrogenase I subunit E 2) (NDH-1 subunit E 2) [NC10 bacterium 'Dutch sediment'] Length = 171 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++SRYP R SA++PL+ QE+ G+++ A+ +A LD+ I+V E+A FY F Sbjct: 6 IQRILSRYPERR--SALLPLMHLCQEEGGYLTADAMRELAARLDLPPIQVAEVAMFYDMF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L P G R + VC C L G E++I + DG + + VEC AC Sbjct: 64 RLKPGGQR-EIWVCHNLSCALLGAEQVIRRLEEVLGVSAGETTPDGLFTIKRVECLAACG 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP + +G D Y ++ +E ++ Sbjct: 123 RAPAIQVGSDYYGPVSHGEVETLV 146 >gi|322421846|ref|YP_004201069.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320128233|gb|ADW15793.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 168 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 82/147 (55%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N++I +Y ++P+L Q+ G+V + I++VA L++ ++ + TFY QF Sbjct: 20 NQIIDKY--LTLPGNLMPVLQGIQDAYGFVPKPTIDLVAERLNVYPSQIYGVLTFYAQFH 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L P G R ++VC T C ++G E++ E ++ D ++E+V C GAC Sbjct: 78 LKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETTEDLRYTFEKVACLGACGM 136 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T ++++EII+ ++ Sbjct: 137 APLAMVNDDTFGKMTVQKVDEIIETYN 163 >gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM 43247] gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM 43247] Length = 706 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP SR SA++PLL Q ++G+++RA I A LD+ +V +ATFY+ ++ +P G Sbjct: 55 RYPQSR--SALLPLLHLVQSEDGFITRAGILFCAAQLDLTAAQVASVATFYSMYRRNPTG 112 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VC T C G + ++ + P +D ++ E VEC AC AP+VM Sbjct: 113 EYL-IGVCTNTLCATLGGDDILGSVCEHLGIDPGDTTADSRITVEHVECNAACDFAPVVM 171 Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175 + + +++ TP+ E+++ G Sbjct: 172 VNWEFFDNQTPDTAIELVEDLRAG 195 >gi|121998540|ref|YP_001003327.1| NADH-quinone oxidoreductase subunit E [Halorhodospira halophila SL1] gi|121589945|gb|ABM62525.1| NADH dehydrogenase subunit E [Halorhodospira halophila SL1] Length = 170 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 26 VNEVISRYPPSRC--QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFY 82 ++ +++YP SA+IP L Q+ G W+ R+ + A+ + M E+ATFY Sbjct: 19 IDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRASAFEVATFY 78 Query: 83 TQFQLS-PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW-EEVEC 140 + F L PVG R V C C L G ++L+ K+ + DG ++ E EC Sbjct: 79 SMFHLDEPVG-RHKVNFCTNISCCLNGADELVAYAEEKLGIRLGETTPDGRITLVREEEC 137 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AC APM+++ Y LT ER++EI+D S Sbjct: 138 LAACTRAPMMVVDGHYYTHLTRERIDEILDGLS 170 >gi|146295663|ref|YP_001179434.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409239|gb|ABP66243.1| NADH dehydrogenase subunit E [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 174 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+F + ++ V+ Y + S +I +L + QE ++ A+ ++ + Sbjct: 12 SNFKNQKVDLSLLDPVLDEYKGEK--SNIIAILQKTQEIYRFLPLDALNYISEKTGVKKA 69 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 ++ IATFY QF+L PVG +Q C T C + G E++ ++++ KP DG Sbjct: 70 KIYGIATFYAQFRLKPVGKYVILQ-CQGTACHVNGSEEIKNALCDELNIKPGDTTEDGMF 128 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + EEV C G C AP++MI +TY LTP++ EII Sbjct: 129 TLEEVACLGCCSLAPVMMINGETYGKLTPDKAREII 164 >gi|320354224|ref|YP_004195563.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] gi|320122726|gb|ADW18272.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] Length = 152 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IPLL Q++ ++S A++ VA+ L+++ V +ATFY QF+ P G H++VC Sbjct: 22 LIPLLQEVQDRFRYLSPEAVQAVADHLELSANDVYGVATFYAQFRFVPPGLH-HIKVCEG 80 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG ++++E P +S+G S E V C G+C AP+V++ Y +T Sbjct: 81 TACHVRGSDRILESISRATGIAPGQTSSNGQFSLERVACFGSCALAPVVVVDDKVYGRMT 140 Query: 162 PERLEEIID 170 + ++I+ Sbjct: 141 AAKTNKLIE 149 >gi|291613542|ref|YP_003523699.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus ES-1] gi|291583654|gb|ADE11312.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus ES-1] Length = 161 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S++ +++ + +YP + QSAV+ L Q+++GW++ + +A + M + V E Sbjct: 2 LSQQITTLIDKELKKYPADQRQSAVMAALRFVQDEKGWIAPDDMADIAAYIGMPQMAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L P+G + + VC C L G ++ + ++ +DG E Sbjct: 62 VATFYHMYNLKPMG-KYTLTVCTNLSCQLCGSDETLAHLNKRLGIGLGEVTADGKYGLRE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQ 176 EC GACV+APM I K LT E++++I+ GQ Sbjct: 121 GECMGACVDAPMFTINNKKLCGRLTSEKIDQILAELDGGQ 160 >gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis CDC1551A] Length = 244 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E+I RYP R SA++PLL Q ++ +++ A + A+ L + V +A+FYT Sbjct: 34 VDAKEIIGRYPDRR--SALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYT 91 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ P G V VC T C + G + + + + + SDG ++ + +EC A Sbjct: 92 MYRRRPTGEYL-VGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAA 150 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+VM+ + +++ TPE E++D+ + Sbjct: 151 CDYAPVVMVNWEFFDNQTPESARELVDSLRS 181 >gi|147678984|ref|YP_001213199.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275081|dbj|BAF60830.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 162 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +IP+L AQ G++ + ++ ++ L++ + +V +ATFY QF L P G R ++V Sbjct: 29 KGGLIPVLQEAQNIYGYLPKEVLQQISKELNVPFSKVFGVATFYAQFHLKPRG-RNIIRV 87 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG K+ E R+ + D + E V C GAC +P +M+ DT+ Sbjct: 88 CLGTACHVRGGAKIYEAVRDHLGISHGETTDDLRYTIENVACIGACGLSPCMMVNNDTHG 147 Query: 159 DLTPERLEEIIDAF 172 L P R+ I+D + Sbjct: 148 RLVPSRVPAILDQY 161 >gi|258651220|ref|YP_003200376.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella multipartita DSM 44233] gi|258554445|gb|ACV77387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella multipartita DSM 44233] Length = 249 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR+ F + F E + E+I+RYP SR SA++PLL Q EG VS+ IE Sbjct: 6 RRIGVPVFLDTGVVFDELTHGRAAEIIARYPMSR--SALLPLLHLVQSVEGCVSQQGIEF 63 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--- 120 A L + V +ATFYT ++ +P G V VC C G + + ++ Sbjct: 64 CAGQLGLTEAEVSAVATFYTMYKRTPCGEHL-VSVCTNALCAALGGDAIYATLSRRLGVG 122 Query: 121 -HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 Q + G+++ E EC AC +AP++ + + +++ TP+ +++ +G+ Sbjct: 123 HEQTAGEPGTPGSITLEHAECLAACDHAPVLTVNYEYFDNQTPDSALDLLTGLQSGE--- 179 Query: 180 IRPGP 184 RP P Sbjct: 180 -RPHP 183 >gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] Length = 655 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 23/175 (13%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E I+ YP S+ +SA +PLL QE G++S AI +A L++ I +LE+ TFY F Sbjct: 11 IDEAITHYPASK-RSASLPLLHLWQEHFGFISDEAISWIAQKLELQPINILELVTFYPMF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC------------------RNKIHQKPLHR 127 + P G R H++VC T C + G +L E N H P+ Sbjct: 70 RREPAGKR-HIRVCRTLSCAMAGSYELKERIAAAAGIDLKKWAEEGAHHANAGHGNPIAV 128 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + DG S E VEC +C +AP+ M+ + E++ +LE+ + D P Sbjct: 129 SPDGQYSIEFVECLASCGSAPVAMVDDNFKENV---KLEDAAKLLKLQRSDATMP 180 >gi|171463530|ref|YP_001797643.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193068|gb|ACB44029.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 167 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ S+++ ++ I++YPP QSAV+ L+ AQ + GWVS IE VA IL+M I Sbjct: 3 TTLQLSDKTMADIHRNIAKYPPEHKQSAVMACLIAAQIEVGWVSPEVIETVAQILEMPSI 62 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + P+G + + +C PC L E + + + GT Sbjct: 63 AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAAYL-KETLGIDYNETTPCGTF 120 Query: 134 SWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170 + +E EC GAC ++P++++ K ++ E+++ +++ Sbjct: 121 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLN 158 >gi|237737512|ref|ZP_04567993.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] gi|229419392|gb|EEO34439.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] Length = 165 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S++I +L +AQE G++ E +A +++ +V + +FY F + P G + + V Sbjct: 28 KSSLIIILHKAQEIFGYIPEEVQEFIAEKIEVPVSKVYGVVSFYNFFSMEPKG-KYPISV 86 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG EK++E + ++ K DG S + + C GAC AP++++GKD + Sbjct: 87 CTGTACYVRGAEKILEALQKELGLKLGGVTEDGLFSLDSLRCVGACGLAPVMLVGKDVHG 146 Query: 159 DLTPERLEEIIDAFST 174 + PE +++II+ + Sbjct: 147 KVKPEDVKKIIENYKN 162 >gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica DSM 15894] gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica DSM 15894] Length = 302 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 5/161 (3%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++RYP R S ++P+L Q +G+VS I A L + V +ATFYTQ++ Sbjct: 18 IVARYPDPR--SGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAEVSAVATFYTQYKRH 75 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P GT V VC T C + G + + + + DG ++ E VEC AC AP Sbjct: 76 PNGTYT-VGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITLERVECNAACDYAP 134 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 ++M+ + +++ TPE + D G+ +RP D + Sbjct: 135 VMMVNWEFFDNQTPESAAAVADDLRAGK--PVRPTRGADSV 173 >gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv] gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551] gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97] gi|121639032|ref|YP_979256.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663004|ref|YP_001284527.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra] gi|148824343|ref|YP_001289097.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis F11] gi|215405147|ref|ZP_03417328.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 02_1987] gi|215413016|ref|ZP_03421717.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 94_M4241A] gi|215428606|ref|ZP_03426525.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T92] gi|215432108|ref|ZP_03430027.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|215447439|ref|ZP_03434191.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|218754929|ref|ZP_03533725.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis GM 1503] gi|219559195|ref|ZP_03538271.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T17] gi|224991524|ref|YP_002646213.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo 172] gi|253800183|ref|YP_003033184.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 1435] gi|254233768|ref|ZP_04927093.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis C] gi|254365774|ref|ZP_04981819.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis str. Haarlem] gi|254552240|ref|ZP_05142687.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188190|ref|ZP_05765664.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CPHL_A] gi|260202295|ref|ZP_05769786.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T46] gi|260206488|ref|ZP_05773979.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis K85] gi|289444713|ref|ZP_06434457.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T46] gi|289448829|ref|ZP_06438573.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis CPHL_A] gi|289555422|ref|ZP_06444632.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 605] gi|289571360|ref|ZP_06451587.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T17] gi|289575861|ref|ZP_06456088.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis K85] gi|289746958|ref|ZP_06506336.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis 02_1987] gi|289751827|ref|ZP_06511205.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T92] gi|289755268|ref|ZP_06514646.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|289759279|ref|ZP_06518657.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|289763332|ref|ZP_06522710.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis GM 1503] gi|294993128|ref|ZP_06798819.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 210] gi|297635792|ref|ZP_06953572.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN 4207] gi|297732789|ref|ZP_06961907.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN R506] gi|298526623|ref|ZP_07014032.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis 94_M4241A] gi|306777466|ref|ZP_07415803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu001] gi|306782192|ref|ZP_07420529.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu002] gi|306786012|ref|ZP_07424334.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu003] gi|306790377|ref|ZP_07428699.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu004] gi|306799102|ref|ZP_07437404.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu006] gi|306804946|ref|ZP_07441614.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu008] gi|306809135|ref|ZP_07445803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu007] gi|306969237|ref|ZP_07481898.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu009] gi|306973584|ref|ZP_07486245.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu010] gi|307081293|ref|ZP_07490463.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu011] gi|307085895|ref|ZP_07495008.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu012] gi|313660122|ref|ZP_07817002.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN V2475] gi|54037921|sp|P65574|NUOE_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|54041672|sp|P65573|NUOE_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|1781219|emb|CAB06290.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN E) [Mycobacterium tuberculosis H37Rv] gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subunit [Mycobacterium tuberculosis CDC1551] gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN E) [Mycobacterium bovis AF2122/97] gi|121494680|emb|CAL73161.1| Probable NADH dehydrogenase I (chain E) nuoE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599297|gb|EAY58401.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis C] gi|134151287|gb|EBA43332.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis str. Haarlem] gi|148507156|gb|ABQ74965.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra] gi|148722870|gb|ABR07495.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis F11] gi|224774639|dbj|BAH27445.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo 172] gi|253321686|gb|ACT26289.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 1435] gi|289417632|gb|EFD14872.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T46] gi|289421787|gb|EFD18988.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis CPHL_A] gi|289440054|gb|EFD22547.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 605] gi|289540292|gb|EFD44870.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis K85] gi|289545114|gb|EFD48762.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T17] gi|289687486|gb|EFD54974.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis 02_1987] gi|289692414|gb|EFD59843.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T92] gi|289695855|gb|EFD63284.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|289710838|gb|EFD74854.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis GM 1503] gi|289714843|gb|EFD78855.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|298496417|gb|EFI31711.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis 94_M4241A] gi|308214178|gb|EFO73577.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu001] gi|308324953|gb|EFP13804.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu002] gi|308329369|gb|EFP18220.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu003] gi|308333198|gb|EFP22049.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu004] gi|308340529|gb|EFP29380.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu006] gi|308344469|gb|EFP33320.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu007] gi|308348465|gb|EFP37316.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu008] gi|308353095|gb|EFP41946.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu009] gi|308357068|gb|EFP45919.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu010] gi|308361022|gb|EFP49873.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu011] gi|308364630|gb|EFP53481.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu012] gi|326902627|gb|EGE49560.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis W-148] gi|328459920|gb|AEB05343.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 4207] Length = 252 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E+I RYP R SA++PLL Q ++ +++ A + A+ L + V +A+FYT Sbjct: 42 VDAKEIIGRYPDRR--SALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYT 99 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ P G V VC T C + G + + + + + SDG ++ + +EC A Sbjct: 100 MYRRRPTGEYL-VGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAA 158 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+VM+ + +++ TPE E++D+ + Sbjct: 159 CDYAPVVMVNWEFFDNQTPESARELVDSLRS 189 >gi|312200063|ref|YP_004020124.1| NADH-quinone oxidoreductase E subunit [Frankia sp. EuI1c] gi|311231399|gb|ADP84254.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EuI1c] Length = 274 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 1/159 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS + EVI+RYP R +SA++PLL Q +EG V+ I+ A L + V Sbjct: 39 FSAATVAAAAEVIARYPVGRQRSALLPLLHLVQAEEGCVTAEGIDFCAGQLGITAAEVQA 98 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ PVG V VC C L G + + + K+ +DGT++ E Sbjct: 99 VASFYTMYKRHPVGDWL-VSVCTNLSCSLVGGQDVYDRLSKKLGVGHDQTTADGTITLEH 157 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 EC AC AP++ + + Y+ + E E I++A + G+ Sbjct: 158 AECLAACDYAPVMTVNYEFYDGVDTEAAEGIVEALARGE 196 >gi|319779202|ref|YP_004130115.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis MCE9] gi|317109226|gb|ADU91972.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis MCE9] Length = 219 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 2/161 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ + +YP + QSAV+ L AQ + WVS ++ +A L+M + V E Sbjct: 3 LSNKAYELIDAELKKYPEDQRQSAVMSALRIAQTELNWVSPEVVQDIATYLNMPVMAVQE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY ++L PVG + + VC PC LR + I + K+ + DG ++ + Sbjct: 63 VATFYNMYELQPVG-KYKITVCTNLPCALREGVQTINYLQEKLGIGIDETSQDGLITIKS 121 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177 EC GAC ++P+++I + R++E+ID +G Sbjct: 122 GECMGACGDSPVLLINNHHMCVRMDKARIDELIDDIYKEEG 162 >gi|91203918|emb|CAJ71571.1| similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit (NuoE) [Candidatus Kuenenia stuttgartiensis] Length = 164 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 19 SEESAIWVN---EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +E A++++ +V+ +Y R ++IP+L Q G++ ++ V+ L+++ + Sbjct: 9 AENEALYLSKTEDVLEKYKHGR--GSLIPILQTIQTAYGYLPEKVVDFVSERLNISVNEI 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +ATFY QF + P G R ++ C T C ++G +++IE K+ D + Sbjct: 67 IGVATFYAQFHMRPRG-RHIIKACSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFTL 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 EEV C GAC AP++M+ +D Y L + IID Sbjct: 126 EEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIID 160 >gi|111075025|gb|ABH04875.1| NAD(P)H-quinone oxidoreductase 24 kDa subunit [Heliobacillus mobilis] Length = 171 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ YP Q + +L Q++ ++ R ++E++A+ L++ ++ +ATFY L Sbjct: 15 ILEGYPKE--QRYTLAMLQDIQKEFQFIPRESMELIADYLELPLSKIYSLATFYKALSLR 72 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G +++C T C +R + L + +P DG S E V C GAC AP Sbjct: 73 PKGKHV-IKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMVNCLGACAIAP 131 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +++I + Y +TP +L+EII + G + R G Sbjct: 132 VIVIDETFYGKVTPAKLQEIIAQYGDAFGQSDRSG 166 >gi|150390844|ref|YP_001320893.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149950706|gb|ABR49234.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 163 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E+ ++E+I R+ + ++IP+L QE ++ + + V+A D++ ++ +A Sbjct: 5 KENGDKIDEIIERHRHN--PGSIIPILQEIQEVFNYLPKDILAVIAEKTDISPAKIYGVA 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF+L PVG + +C T C + G +K+ E N++ + DG + V Sbjct: 63 TFYKQFRLKPVGNYL-ILLCQGTACHVNGSKKIEETLYNELKIRDGETTEDGLFTLNNVA 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G C +P++MI ++TY L PE++ +II Sbjct: 122 CLGCCSLSPVMMINEETYGSLVPEQVIKII 151 >gi|289523905|ref|ZP_06440759.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502561|gb|EFD23725.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 177 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +IPLL R QE G++ + A+ ++ +L + Y +V +ATFY QF L+P G R +Q C Sbjct: 46 GLIPLLQRTQEVIGYLPKEALVALSEMLHIPYSKVFGVATFYAQFHLTPRG-RHVIQQCD 104 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G ++ V K+ P D ++E V C G+C AP MI L Sbjct: 105 GTACHVKGGPRIRRVIEEKLGISPGETTEDLKATYEIVYCLGSCGLAPAAMIDGKVIGRL 164 Query: 161 TPERLEEIIDAF 172 T E+++ I+D+ Sbjct: 165 TQEKMKRILDSM 176 >gi|312144192|ref|YP_003995638.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp. 'sapolanicus'] gi|311904843|gb|ADQ15284.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp. 'sapolanicus'] Length = 160 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 VNE++ RY + + +IP+L AQE+ G++ + +A L+++ +V + TFY+QF Sbjct: 16 VNEILGRY--EKKERYLIPVLQEAQEEYGYLPEEVLTEIALRLNLSLSQVYGVVTFYSQF 73 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G ++VC T C +RG +++ + ++ D + E V C GAC Sbjct: 74 HQEPRGNNI-IRVCMGTACHVRGGGQILSALKEELEIDSGETTDDLNFTLESVACIGACG 132 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++M+ DT+ L PE + I+ + Sbjct: 133 LAPVIMVNDDTHGRLIPEEIPSILAKY 159 >gi|218780401|ref|YP_002431719.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761785|gb|ACL04251.1| NADH-quinone oxidoreductase, E subunit-like protein (NuoE) [Desulfatibacillum alkenivorans AK-01] Length = 161 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +IPLL QE+ G+V +IE +A L++ V + TFY F L P G ++VC Sbjct: 24 GLIPLLQAVQEEFGYVPPESIEPIAEALNIPPSEVQGVVTFYAGFSLKPKGKYV-LRVCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G + ++ + +H + + D S E V C GAC AP +M+ + + L Sbjct: 83 GTACHVKGGQSILSSVKKHLHLEEGETSEDFQFSLETVACLGACFVAPAMMVNRTYFGKL 142 Query: 161 TPERLEEIIDAFSTGQGD 178 +P+++ +I + +GD Sbjct: 143 SPDKVNNVIGQYEKTEGD 160 >gi|302393030|ref|YP_003828850.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302205107|gb|ADL13785.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + ++++ Y + +IP+L QE+ G++ + ++ ++ L ++ ++ + Sbjct: 13 EEYLAPLRDILAGYKMKK--KNLIPILQAIQEEYGYLPQQVLKELSENLGVSLSKIYGVT 70 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L+P G ++VC T C +RG EK++E + ++ D + E V Sbjct: 71 TFYSQFHLNPRGENV-IRVCMGTACHVRGGEKILEKIQEELGIDDGETTEDLKFTLESVA 129 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI DT+ LTP+++ EI+ + Sbjct: 130 CIGACGLAPVIMINDDTHGRLTPDQVPEILAEY 162 >gi|294506288|ref|YP_003570346.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber M8] gi|294342616|emb|CBH23394.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber M8] Length = 225 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 17 SFSEESAIWVNEVISR-------YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 +FS++ +W +E ++ YP Q+A++ +L AQE+ G+++ I++ A+ LD Sbjct: 21 AFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLCADTLD 78 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 M + + +ATFY Q+ GT + VC C + G ++ K+ Sbjct: 79 MTFTQAYGVATFYHQYFKEEKGTYV-LDVCTCFTCQVCGGYDVLHYLEEKLGVHAGETTD 137 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 DG + +E EC G+C +APM+ I Y +LTP+++++++++ G+ Sbjct: 138 DGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGE 185 >gi|206901131|ref|YP_002250632.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum H-6-12] gi|206740234|gb|ACI19292.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum H-6-12] Length = 162 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 4/157 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FSE + V ++ R+ S + ++I +L QE+ G++ + A+E+V+ L + + Sbjct: 5 LKFSEYAQKEVERILDRF--SSTKGSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEI 62 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+ F+L P G +++C T C ++G L+ ++ K DG S Sbjct: 63 YGVVTFYSFFRLEPQGKHV-IRLCMGTACYVKGAADLL-TALEQMGLKEGKVTEDGYFSL 120 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C GAC AP +MI ++ Y LTP++L+++I+ F Sbjct: 121 DLVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENF 157 >gi|296132261|ref|YP_003639508.1| NADH-quinone oxidoreductase, E subunit [Thermincola sp. JR] gi|296030839|gb|ADG81607.1| NADH-quinone oxidoreductase, E subunit [Thermincola potens JR] Length = 158 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 82/147 (55%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++++Y + A+IP+L + Q+ G++ + A++ ++ L + + + TFY QF Sbjct: 14 LEALLAKYKSQK--GALIPVLQQTQDIYGYLPKEALQQISRELKIPLSEIFGVCTFYAQF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 LSP G R ++VC T C +RG K+ E + ++ K D + E V C GAC Sbjct: 72 HLSPRG-RNIIRVCLGTACHVRGGAKIFERVQQELGIKDGETTEDLRFTIESVACIGACG 130 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++M+ DT+ LTP+++ +I+ + Sbjct: 131 LAPVIMVNDDTHGRLTPDQIPDILAQY 157 >gi|218961475|ref|YP_001741250.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] gi|167730132|emb|CAO81044.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] Length = 151 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 5/148 (3%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E+ +Y P + +I +L Q+Q+ ++S A++ VA LD+ + + TFY Sbjct: 1 MIKEICQKYAPRK--DNLIQILHEIQDQDPQHYISPEAVDTVAEYLDIPVNHIYGVLTFY 58 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T + P G +++C + PC ++G + ++ + + DG + E C G Sbjct: 59 TMYSTKPRGKNI-IRLCESPPCYIKGSDNMLRKLKVLLGINIGETTKDGLFTLEFTSCLG 117 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170 C NAP++MI D Y DLT E++EEII+ Sbjct: 118 VCGNAPVMMINDDVYGDLTEEKVEEIIE 145 >gi|289522153|ref|ZP_06439007.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503989|gb|EFD25153.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 161 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q +IP+L Q + G++ A+ ++ L M + +ATFY QF L P G R ++V Sbjct: 28 QGGLIPILQEVQREFGYLPEDALLTISRELKMPKAEIYGVATFYAQFHLKPRG-RHIIRV 86 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +++E + + D + E V C GAC AP++M+ +DT+ Sbjct: 87 CRGTACHVRGSLQILEKIKQTLGIDENETTEDLRFTLEPVACLGACGLAPVMMVDEDTHG 146 Query: 159 DLTPERLEEIIDAF 172 +TP++++ I+D + Sbjct: 147 RMTPDKIQSILDRY 160 >gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Salinibacter ruber DSM 13855] gi|83757864|gb|ABC45977.1| NADH-ubiquinone oxidoreductase 24 kda subunit, putative [Salinibacter ruber DSM 13855] Length = 249 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 17 SFSEESAIWVNEVISR-------YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 +FS++ +W +E ++ YP Q+A++ +L AQE+ G+++ I++ A+ LD Sbjct: 45 AFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLCADTLD 102 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 M + + +ATFY Q+ GT + VC C + G ++ K+ Sbjct: 103 MTFTQAYGVATFYHQYFKEEKGTYV-LDVCTCFTCQVCGGYDVLHYLEEKLGVHAGETTD 161 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 DG + +E EC G+C +APM+ I Y +LTP+++++++++ G+ Sbjct: 162 DGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGE 209 >gi|15806513|ref|NP_295224.1| NADH dehydrogenase I subunit E [Deinococcus radiodurans R1] gi|6459263|gb|AAF11068.1|AE001994_4 NADH dehydrogenase I, E subunit [Deinococcus radiodurans R1] Length = 207 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 16 FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+ + V E+ SRYP P +SA++PLL Q+ EG+V+ + +A + Sbjct: 1 MSYFADKTPLVAEIFSRYPDTPQGRRSALMPLLREVQDAEGFVAAPRLAEIAELCGTTAT 60 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY+ + P G R H+QVC T C L G + L + ++ +P DG Sbjct: 61 EVRSVMSFYSTYHTVPTG-RYHLQVCSTLMCALAGSDALWDELVTRLDVQPGEVTPDGRF 119 Query: 134 SWEEVECQGACVNAPMVMIGKDT-YEDLTP 162 S ++VEC G+C AP++ + + YE + P Sbjct: 120 SVQKVECLGSCGTAPVLQLNDEGFYERVGP 149 >gi|119510368|ref|ZP_01629503.1| ATP synthase subunit E [Nodularia spumigena CCY9414] gi|119465005|gb|EAW45907.1| ATP synthase subunit E [Nodularia spumigena CCY9414] Length = 179 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 13 PSSFSFSEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 PS+ E+ + ++ I RY Q A+I +L +AQE G++ + + +A+ L + Sbjct: 16 PSATDIHEDKRLKMLSATIKRYQYQ--QDALIEILHKAQELFGYLKKDVLVYIAHQLKLP 73 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY F L+P+G R VC T C ++G E+++ N IH +P ++DG Sbjct: 74 PSTVYGVATFYHFFSLAPIG-RHSCMVCTGTACYVKGAEEILNSLENSIHIRPGETSADG 132 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +S C G C AP+V+ D TPE + + I + Sbjct: 133 QISLLTARCLGPCGIAPVVVFDDTVLGDQTPESVGDRIKGW 173 >gi|332971175|gb|EGK10139.1| NADH-quinone oxidoreductase subunit E [Psychrobacter sp. 1501(2011)] Length = 170 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E I YP +R +A + L Q++ GWV A + +AN+LD+ + +ATF+ + Sbjct: 26 IHEYIHHYPQAR--AASLDALKLVQKRNGWVDDAQVNAIANLLDVPVTDIEGVATFFNRI 83 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 SPVG R + VC + C L G E L ++++ + +DG + + C G C Sbjct: 84 YRSPVG-RHVILVCDSIACYLTGYEGLAAELKSQLGIEFGQTTTDGRFTLLPICCLGNCD 142 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P V+I +DT+ +TP+++ E+++ + Sbjct: 143 KGPSVLIDEDTFGPVTPDQVAELLEYY 169 >gi|77919201|ref|YP_357016.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545284|gb|ABA88846.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 173 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 78/131 (59%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L +AQ G++ + E VA+ ++++ +V + +FYT F + P G + + VC Sbjct: 43 LVTVLHKAQSLFGYLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTMIPKG-KHPISVCMG 101 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +K+++ +N++ DG S + + C GAC AP+V++G+ Y ++T Sbjct: 102 TACFVKGADKVVDAFKNQLGVTVSEVTRDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 161 Query: 162 PERLEEIIDAF 172 P+++++II F Sbjct: 162 PDQVKDIIADF 172 >gi|83590720|ref|YP_430729.1| NADH-quinone oxidoreductase, E subunit [Moorella thermoacetica ATCC 39073] gi|83573634|gb|ABC20186.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073] Length = 159 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++++RY + A+IP+L QE G++ A++ +A +D+ V + TFY QF Sbjct: 15 IKQIVARYQEEK--GALIPVLQATQEALGYLPPEALKEIAAAMDLPLSTVYSVVTFYAQF 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R + VC T C +RG +++ + + D + E V C GAC Sbjct: 73 HLQPRG-RHVIHVCQGTACHIRGGNRILNRIKELLQIDAGETTPDLRFTLEPVACLGACA 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++ I DTY L P+ + I++ + Sbjct: 132 LAPVMSISGDTYGHLKPDMIAGILEKY 158 >gi|225175971|ref|ZP_03729963.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168559|gb|EEG77361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 155 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ + E+ S+Y R +IP+L Q G++ A+ +A + + +V +A Sbjct: 2 EKEDMKFQEIFSQYNGER--EELIPILQDTQAIYGYLPEQAMRAIARFMRIPQSQVYGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TF+ QF S G A ++VC T C ++G +L+E ++ D + S E V Sbjct: 60 TFFGQFYFSRRGKHA-IKVCLGTACHVKGAGRLMEAFEREMGIGCGCITDDYSFSLERVN 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP+VM+G+D Y + +R++E++D ++ Sbjct: 119 CVGACAIAPVVMVGEDVYGHVESKRVKEVLDIYA 152 >gi|206602056|gb|EDZ38538.1| Putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum sp. Group II '5-way CG'] Length = 168 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+ +L + QE+ G+V A+E V IL++ ++ + TFY+QF P G + ++V Sbjct: 25 EGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRG-KFVLKV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG L++ + ++H +P D + E V C G+C APM M+ Y Sbjct: 84 CVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVACLGSCALAPMAMVQGTAYG 143 Query: 159 DLTPERLEEIIDAF 172 L+ +++ +I F Sbjct: 144 KLSADKMVSLIRQF 157 >gi|269218341|ref|ZP_06162195.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212200|gb|EEZ78540.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 223 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+++RYP +R SA++P+L Q +G+VS I + A++L + V +ATFY+Q++ Sbjct: 19 EIVARYPVAR--SALMPMLHLVQSVDGFVSPRGIALCADVLGLTRAEVSAVATFYSQYRR 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G +V VC C + G +++ E + + DG ++ E +EC C A Sbjct: 77 HPNG-EYNVGVCTNALCAVMGGDEIWEALTSALGVGSDETTPDGKITLEALECNAGCDYA 135 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 P+VM+ + +++ TP +I++ G+ + P D++ + Sbjct: 136 PVVMVNWEFFDNQTPTSALQIVEDIRAGR--DLHPTRGADKVHT 177 >gi|257053165|ref|YP_003130998.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256691928|gb|ACV12265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 186 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V EV+ P ++ VIP L QE+ G++ + +E++A + V A+FY+QF Sbjct: 42 VREVLVDVPTAK--EGVIPALQDVQEEYGYLPKFTMELIAEHTGTSIAHVYGTASFYSQF 99 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G ++VC T C ++G +++ E +++ DG + + V C GAC Sbjct: 100 HMEPRGDHT-IKVCTGTACHVKGADEVSEAFCDELDVDLQDVTDDGKFTVDHVRCIGACS 158 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 A VM+G + Y D+ P+ ++++I+ + Sbjct: 159 LAVAVMVGDEVYGDVQPDEVDQVIEEY 185 >gi|300782455|ref|YP_003762746.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32] gi|299791969|gb|ADJ42344.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32] Length = 285 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 16/176 (9%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F + E+I+RYP SR SA++P+L Q +G+VS+ I A LD++ V Sbjct: 49 FDADIHAKAQELIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCAKQLDLSDAEVSA 106 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPLHRNSD----- 130 +ATFYT ++ P G V VC T C G + + + + + +PL N Sbjct: 107 VATFYTMYKRKPCGEHL-VSVCTNTLCAAMGGDAIYKRLQTHLGSEAEPLGHNETAGTPN 165 Query: 131 --GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 G+++ E EC AC AP++ + + +++ T E+ ++DA G+ +P P Sbjct: 166 EPGSITLEHAECLAACDLAPVIQVNYEYFDNQTEEKAVALVDALQAGK----KPAP 217 >gi|304413374|ref|ZP_07394847.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella insecticola LSR1] gi|304284217|gb|EFL92610.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella insecticola LSR1] Length = 172 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 PS F S E + + Y +R +A I L Q++ GWV AI +A IL + Sbjct: 15 PSDFVLSAEEQAAIEQEKQHYEDAR--AATIEALKIVQKKRGWVPDGAIYAIAEILAIPA 72 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFY+Q PVG R ++ C + C + G +++ V K+ KP +DG Sbjct: 73 SDVEGVATFYSQIFRRPVG-RHVIRYCDSVVCYITGYQEIQTVLEKKLSIKPGQTTTDGR 131 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ L PE +E +++ + Sbjct: 132 FTLLPTCCLGNCDKGPTMMIDEDTHSYLKPEDIEPLLERY 171 >gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E subunit [Deinococcus geothermalis DSM 11300] gi|94555301|gb|ABF45215.1| NADH dehydrogenase subunit E [Deinococcus geothermalis DSM 11300] Length = 203 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 4/150 (2%) Query: 26 VNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + ++ SRYP P +SA++PLL Q+ EG+VS + +A + V + +FY+ Sbjct: 11 LADIFSRYPATPQGRRSALMPLLREVQDAEGFVSEVRMAEIAELCGTTATEVRSVMSFYS 70 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + P G R H+QVC T C L G ++L + +++ P DG S ++VEC G+ Sbjct: 71 TYHTLPTG-RYHLQVCSTLMCALAGSDELWDYLVSELDVVPGEVTPDGRFSVQKVECLGS 129 Query: 144 CVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 C AP+V + + YE +T + + ++ A Sbjct: 130 CGTAPVVQLNDEGYYERVTRTKCDRLLAAL 159 >gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria meningitidis alpha275] gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E; NDH-1, chain E) [Neisseria meningitidis 8013] gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M6190] gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis ES14902] gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 961-5945] gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 961-5945] gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis G2136] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|301060599|ref|ZP_07201434.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] gi|300445302|gb|EFK09232.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] Length = 158 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I +Y S+ + A+IPLL Q+ G+V A+++VA L + + + + TFYTQF L+ Sbjct: 11 LIEKY--SQKKGALIPLLQEIQDAYGYVPDDAVQLVAQELAIFPVEIYGVLTFYTQFYLT 68 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + ++VC T C + G + L + K+ + DG + E V C G C AP Sbjct: 69 PRG-KHTIRVCQGTACHVMGAKGLFDYLLEKLEVEEGETTKDGFFTVERVACLGCCGMAP 127 Query: 149 MVMIGKDTYEDLTPERLEE 167 ++MI D Y T + +EE Sbjct: 128 VIMIDDDFYGRCTIQNIEE 146 >gi|300087355|ref|YP_003757877.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527088|gb|ADJ25556.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 166 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 SR +SA+IPLL Q++ G++ A+ A L ++ V +A+FYTQF+ P G R Sbjct: 20 SRDRSALIPLLQALQQEFGYLPPEALSAAAERLKLSESAVYGVASFYTQFRFQPSG-RHI 78 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 ++VC T C + G EK+++ R + +P ++DG S E V C GAC AP+V++ ++ Sbjct: 79 IKVCRGTACHVGGGEKILDELRRGLDVEPGGTSADGEYSLETVACVGACALAPVVLVNEE 138 >gi|304312243|ref|YP_003811841.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] gi|301797976|emb|CBL46198.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] Length = 180 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+ S E A + +S+YP ++ S I L Q GWVS +++ VA L ++ Sbjct: 20 SADGLSPEEAAEILAGLSQYPDNQAMS--IEALKIVQHHRGWVSNESLKAVAAFLRLSPE 77 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY VGT V+VC + C + GCE L+ +NK+ +DG Sbjct: 78 EVEGVATFYNLVYRQRVGTHV-VRVCDSVSCWIMGCEALVGELQNKLQLTLGETTADGRF 136 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC +AP+VM+G D + D+ E ++ ++ + Sbjct: 137 TLLPGPCMGACDHAPVVMVGDDYHFDVKAEAIDALLKPY 175 >gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768] gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis N1568] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102] gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685] gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|254805713|ref|YP_003083934.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14] gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14] Length = 157 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ AI VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|302879337|ref|YP_003847901.1| NADH-quinone oxidoreductase, E subunit [Gallionella capsiferriformans ES-2] gi|302582126|gb|ADL56137.1| NADH-quinone oxidoreductase, E subunit [Gallionella capsiferriformans ES-2] Length = 159 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 2/145 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +N + +YP + QSAV+ L Q+++GW++ + +A L M + V E+ATFY + Sbjct: 10 INRELKKYPVDQKQSAVMSALRFVQDEKGWIATEDMADIAAFLGMPQMAVYEVATFYHMY 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P+G + + VC C L G + +K+ +DG E EC GAC Sbjct: 70 NLKPMG-KTTLTVCTNLSCTLCGSADTVAYLTSKLGIGFGEVTADGKYGMREGECMGACK 128 Query: 146 NAPMVMI-GKDTYEDLTPERLEEII 169 +AP++ I K LTP ++++I+ Sbjct: 129 DAPLMTINNKKLCGRLTPAKIDQIL 153 >gi|257054396|ref|YP_003132228.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017] gi|256584268|gb|ACU95401.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017] Length = 253 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P + F E ++ +RYP +R SA++P+L Q +G+VS+ I A LD+ Sbjct: 11 KPETDPFGPEIEEQAQQLAARYPQAR--SALLPMLHLVQSVQGYVSQEGIAFCARQLDLT 68 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPL-HRN 128 V +ATFYT ++ P G V VC T C G +++ + + + KPL H Sbjct: 69 EAEVSAVATFYTMYKRKPCGEHL-VSVCTNTLCAALGGDEIYKRLSEHLGEDGKPLGHEE 127 Query: 129 S------DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + G+++ E EC AC P++ + + +++ TPE+ E++DA G+ Sbjct: 128 TVGEPGEPGSITLEHAECLAACDFGPVLQVNYEYFDNQTPEKAVELVDALRRGE 181 >gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703] gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703] Length = 157 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|124515812|gb|EAY57321.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum rubarum] Length = 168 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+ +L + QE+ G+V A+E V IL++ ++ + TFY+QF P G + +++ Sbjct: 25 EGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRG-KFVLKI 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG L++ + ++H +P D + E V C G+C APM M+ Y Sbjct: 84 CVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVACLGSCALAPMAMVQGTAYG 143 Query: 159 DLTPERLEEIIDAF 172 L+ +++ +I F Sbjct: 144 KLSADKMVSLIRQF 157 >gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor [Neisseria flavescens SK114] gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor [Neisseria flavescens SK114] Length = 157 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|239816479|ref|YP_002945389.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110] gi|239803056|gb|ACS20123.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110] Length = 182 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+ EG++S +A L MA I V E+ TFY + P Sbjct: 31 VAKYPEAGKQSAVMACLAIVQQDEGFISMQREREIAEYLGMAPIAVHEVTTFYNMYNQHP 90 Query: 90 VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 VG + + VC PC LR G L+ + K+ K +DG + ++ EC GAC ++P Sbjct: 91 VG-KFKLNVCTNLPCQLRDGVTALVHL-EKKLGIKMGETTADGMFTLQQSECLGACADSP 148 Query: 149 MVMIGKDTY-EDLTPERLEEIIDAF 172 ++++ T ++ E+L+++ID Sbjct: 149 VMLVNDRTMCSFMSNEKLDQLIDGL 173 >gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8] gi|4980495|gb|AAD35106.1|AE001689_12 NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8] Length = 176 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+I +L +AQE G++ +E +++ LD+ +V + TFY F P G + ++V Sbjct: 39 KDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKG-KHQIKV 97 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-Y 157 C T C ++G +++ E ++ P SDG S V C GAC AP+VM+ +D Y Sbjct: 98 CLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFY 157 Query: 158 EDLTPERLEEIIDAF 172 +TP+ + +II + Sbjct: 158 GRVTPDMVPQIISKY 172 >gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria meningitidis alpha153] Length = 157 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996] gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996] Length = 157 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I chain E [Neisseria lactamica ST-640] gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06] Length = 157 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|312793477|ref|YP_004026400.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876008|ref|ZP_07735997.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797206|gb|EFR13546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|312180617|gb|ADQ40787.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 160 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E+I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILSRY 160 >gi|148270045|ref|YP_001244505.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170288729|ref|YP_001738967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|281412074|ref|YP_003346153.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] gi|147735589|gb|ABQ46929.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170176232|gb|ACB09284.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|281373177|gb|ADA66739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] Length = 162 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+I +L +AQE G++ +E +++ LD+ +V + TFY F P G + ++V Sbjct: 25 KDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKG-KHQIKV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-Y 157 C T C ++G +++ E ++ P SDG S V C GAC AP+VM+ +D Y Sbjct: 84 CLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFY 143 Query: 158 EDLTPERLEEIIDAF 172 +TP+ + +II + Sbjct: 144 GRVTPDMVPQIISKY 158 >gi|301060220|ref|ZP_07201087.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300445732|gb|EFK09630.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 195 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ ++S A+++VA+ L++A V +ATFY QF+ P G + H++VC Sbjct: 48 LIPMLQMIQERHAYLSADALQMVADKLELALCEVYGVATFYNQFRFHPPG-KHHMKVCLG 106 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG + ++E K+ D S E V C G C AP+V++ + + + Sbjct: 107 TACHVRGGDIILENFERKLGIGHGETTPDREFSIERVACVGCCALAPVVIVDETAHGHVA 166 Query: 162 PERLEEIIDAFST 174 P ++E +I F Sbjct: 167 PSKVEGLILGFQV 179 >gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 157 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|238023163|ref|ZP_04603589.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147] gi|237865546|gb|EEP66686.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147] Length = 157 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + +A + E Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMSALRIAQVEKGYLAPETIEFVAKYIGIAPVAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ +DG + E Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIDYGETTADGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis OX99.30304] Length = 157 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491] gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491] gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M0579] gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240149] gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NZ-05/33] Length = 157 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGISYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 634 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+PLL E++ ++S + + ++ + ++ +L I TFY F P G + V+V Sbjct: 34 EQAVLPLLHYYMEKKNYISESDVSKISQLTGLSVSDILGIGTFYQHFVFHPTGKNS-VRV 92 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C TTPC+ RG +K E + DG + +C G C AP I D Y Sbjct: 93 CLTTPCLFRGGKKTFETLSKTLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 152 Query: 159 DLTPERLEEIIDAFSTGQ 176 +PE + I++ + G+ Sbjct: 153 GTSPEEIPSILEEYRKGK 170 >gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330] Length = 157 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SAV+ L AQ ++G+++ IE VA + + I E Sbjct: 2 LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ +DG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIGYGETTADGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|188585337|ref|YP_001916882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350024|gb|ACB84294.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 186 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +IPLL QE+EG++SR +E +A ++++ +++ + +FY+QF + P G ++VC Sbjct: 42 GLIPLLQTVQEREGYLSRKRLESIAREMNLSLAKIMGVVSFYSQFHIQPKGKNI-IRVCM 100 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G +++E + ++ + D S E V C GAC AP++ I +T+ + Sbjct: 101 GTACHVKGAGQVMEKFQRELSIETGQTTEDREFSLEAVSCIGACGLAPVLTINHNTHGKV 160 Query: 161 TPERLEEIIDAF 172 T + +I+ + Sbjct: 161 TTSDVNHLINRY 172 >gi|307297598|ref|ZP_07577404.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916858|gb|EFN47240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 164 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +I +L +AQE G++S + V+ LD+ +V + TFY F + P G + ++VC Sbjct: 29 VLINVLHKAQEIFGYLSEELQQHVSEKLDIPLSQVYGVVTFYNFFSMKPKG-KNQIKVCL 87 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED- 159 T C ++G +K++E +++++ + SDG S V C GAC AP+V+IG+D Y Sbjct: 88 GTACYVKGADKILERLQDELNVEMNEPTSDGLFSIHAVRCLGACSMAPVVLIGEDDYYGR 147 Query: 160 LTPERLEEIIDAF 172 ++P+ + +I+D + Sbjct: 148 VSPDEVSKILDKY 160 >gi|22125528|ref|NP_668951.1| NADH dehydrogenase subunit E [Yersinia pestis KIM 10] gi|45442152|ref|NP_993691.1| NADH dehydrogenase subunit E [Yersinia pestis biovar Microtus str. 91001] gi|108808039|ref|YP_651955.1| NADH dehydrogenase subunit E [Yersinia pestis Antiqua] gi|108812309|ref|YP_648076.1| NADH dehydrogenase subunit E [Yersinia pestis Nepal516] gi|145599242|ref|YP_001163318.1| NADH dehydrogenase subunit E [Yersinia pestis Pestoides F] gi|229838094|ref|ZP_04458253.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895293|ref|ZP_04510467.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides A] gi|229898654|ref|ZP_04513799.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. India 195] gi|229902653|ref|ZP_04517770.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516] gi|270490165|ref|ZP_06207239.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27] gi|294504366|ref|YP_003568428.1| ATP synthase subunit E [Yersinia pestis Z176003] gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [Yersinia pestis KIM 10] gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [Yersinia pestis biovar Microtus str. 91001] gi|108775957|gb|ABG18476.1| NADH dehydrogenase I chain E [Yersinia pestis Nepal516] gi|108779952|gb|ABG14010.1| NADH dehydrogenase I chain E [Yersinia pestis Antiqua] gi|145210938|gb|ABP40345.1| NADH dehydrogenase I chain E [Yersinia pestis Pestoides F] gi|229680100|gb|EEO76199.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516] gi|229688202|gb|EEO80273.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. India 195] gi|229694460|gb|EEO84507.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701779|gb|EEO89804.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides A] gi|262362645|gb|ACY59366.1| ATP synthase subunit E [Yersinia pestis D106004] gi|262366274|gb|ACY62831.1| ATP synthase subunit E [Yersinia pestis D182038] gi|270338669|gb|EFA49446.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27] gi|294354825|gb|ADE65166.1| ATP synthase subunit E [Yersinia pestis Z176003] gi|320014610|gb|ADV98181.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 187 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186 >gi|189426183|ref|YP_001953360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] gi|189422442|gb|ACD96840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] Length = 171 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 3/147 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 EVI +Y ++P+L Q+ G+V R ++ VA L++ ++ + TFY QF L Sbjct: 25 EVIQKY--KDIPGNLMPVLQGIQDAYGYVPRITVDYVAERLNVYPSQIYGVLTFYAQFHL 82 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G + ++VC T C + G E++ E ++I D ++E V C GAC A Sbjct: 83 KPRG-KFIIRVCMGTACHVLGAERIKESFYDRIGIGHAETTPDRRFTFELVACLGACGMA 141 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFST 174 P+ M+ +TY +T ++++EII +S+ Sbjct: 142 PLAMVNDETYGKMTVQKVDEIIKEYSS 168 >gi|77919235|ref|YP_357050.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545318|gb|ABA88880.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 172 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 77/132 (58%), Gaps = 1/132 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L +AQ G++ + E VA+ +D + +V + +FYT F + P G + + VC Sbjct: 42 LVTVLHKAQSLFGYLPKEVQEFVADQMDESLAKVYGVVSFYTFFTMIPKG-KHPISVCMG 100 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +K+++ + ++ DG S + + C GAC AP+V++G+ Y ++T Sbjct: 101 TACFVKGADKVVDALKQQLGVTVSEVTKDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 160 Query: 162 PERLEEIIDAFS 173 P+++++I+ F+ Sbjct: 161 PDQVKDILADFA 172 >gi|319794664|ref|YP_004156304.1| NADH-quinone oxidoreductase, e subunit [Variovorax paradoxus EPS] gi|315597127|gb|ADU38193.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus EPS] Length = 180 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + QSAV+ L Q+ EG++S +A+ L MA I V E+ TFY + P Sbjct: 29 VAKYPEAGKQSAVMACLAIVQQDEGYISMQREREIADYLGMAPIAVHEVTTFYNMYNQHP 88 Query: 90 VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 VG + + VC PC LR G L+ + K+ K DG + ++ EC GAC ++P Sbjct: 89 VG-KFKLNVCTNLPCQLRDGVTALVHL-EKKLGIKMGETTGDGLFTLQQSECLGACADSP 146 Query: 149 MVMIGKDTY-EDLTPERLEEIIDAF-STGQGDT 179 ++++ T ++ E+L+++I+ ++ +G+T Sbjct: 147 VMLVNDRTMCSFMSNEKLDQLIEGLRASTKGET 179 >gi|302391755|ref|YP_003827575.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide dehydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302203832|gb|ADL12510.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide dehydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L AQ++ G++ + + ++ LD+ + V +ATFY+QF L P G ++VC Sbjct: 33 LIPVLQAAQQEYGYLPQPVLREISKELDIFFSEVYGVATFYSQFHLEPRGENI-IRVCMG 91 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG +++++ + ++ D + E V C GAC AP++ + DT+ L Sbjct: 92 TACHVRGGDEILDKVKAELGIDAGETTDDQKFTLESVACIGACGLAPVMTVNDDTHGLLV 151 Query: 162 PERLEEIIDAF 172 P+++ +I+D + Sbjct: 152 PDKIPDILDQY 162 >gi|51596903|ref|YP_071094.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis IP 32953] gi|170023804|ref|YP_001720309.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis YPIII] gi|186895984|ref|YP_001873096.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis PB1/+] gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [Yersinia pseudotuberculosis IP 32953] gi|169750338|gb|ACA67856.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis YPIII] gi|186699010|gb|ACC89639.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis PB1/+] Length = 187 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AEPAAMPDAFELSTEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186 >gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E; NDH-1, chain E) [Neisseria meningitidis WUE 2594] Length = 157 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKFGISYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18] gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18] gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710] Length = 157 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58] gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58] gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis H44/76] gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis CU385] gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis H44/76] Length = 157 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|189499446|ref|YP_001958916.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium phaeobacteroides BS1] gi|189494887|gb|ACE03435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium phaeobacteroides BS1] Length = 195 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 4/146 (2%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 SA +PLL Q + G++ R A++++ D+ ++ +ATFY+QF+L PVG R ++VC Sbjct: 27 SAAVPLLQAVQNEYGYLPREAMDIIVAETDVGASQLYGVATFYSQFRLDPVG-RHVIKVC 85 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGACVNAPMVMIGKDTY 157 T C + G +++ R + K + S+G+ + E+V C G C AP+++IG +T+ Sbjct: 86 HGTACHVSGADRINTALRQSLGIKNEDEDTASNGSYTVEDVACIGCCSLAPVMVIGDETF 145 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPG 183 +L + + + QG+ + PG Sbjct: 146 GNLKGTDAQRSLKKHARQQGEFL-PG 170 >gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M13399] gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240013] gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240013] gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M04-240196] Length = 157 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens NRL30031/H210] gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens NRL30031/H210] Length = 157 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|312127643|ref|YP_003992517.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor hydrothermalis 108] gi|311777662|gb|ADQ07148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor hydrothermalis 108] Length = 160 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C GAC AP+V+I Y L+ + +E+I+ Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDIL 157 >gi|322419372|ref|YP_004198595.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320125759|gb|ADW13319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 173 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ L +AQ G++ + VA+++ + +V + +FYT F + P G + + VC Sbjct: 43 LVTALHKAQSLYGYLPMEVQQQVASLMGTSLSQVYGVVSFYTYFTMVPKG-KYPISVCNG 101 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EK+I+ + ++ + DG S + + C GAC AP+VM+G+ T+ +T Sbjct: 102 TACFVRGSEKVIDAFKKQLCIEVGEVTRDGLFSIDVLRCVGACALAPVVMVGEKTFGGVT 161 Query: 162 PERLEEIIDAF 172 P+++++II F Sbjct: 162 PDQVKDIIAEF 172 >gi|284992921|ref|YP_003411475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus obscurus DSM 43160] gi|284066166|gb|ADB77104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus obscurus DSM 43160] Length = 341 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E+ + E+I+RYP R SA++P+L Q +G+V+ + + A L + V Sbjct: 31 LTEQVRLEAREIIARYPQPR--SALLPMLHLVQSHQGYVTPEGVALCAEELGLTKAEVGA 88 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ P G R V VC T C + G +++ + + +DG+++ E Sbjct: 89 VATFYTMYKRRPTG-RHLVSVCTNTLCAVLGGQRIFDALSRDLGVHHDETAADGSVTLEH 147 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 EC AC AP+V + + Y+ + E++ A G+ Sbjct: 148 AECLAACDYAPVVTVDYEFYDQQDVDSARELVAALRRGE 186 >gi|147678347|ref|YP_001212562.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146274444|dbj|BAF60193.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 162 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +I +L RAQE G++ R A+ ++A L ++ V + TFY F L P G R + VC Sbjct: 29 TGLIQVLTRAQELIGYLPRWALIMIAEGLGLSLQEVYGVVTFYAFFSLIPRG-RHKISVC 87 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-MVMIGKDTYE 158 T C ++G + +++ R I KP D + E V C GAC AP M++ GKD + Sbjct: 88 AGTACYVKGTKMVLKTLREAIGIKPGQTTPDSRFTLEIVRCIGACGLAPAMIIDGKDVHG 147 Query: 159 DLTPERLEEIIDAFS 173 L PE++ I++ ++ Sbjct: 148 RLEPEQIPAILEQYA 162 >gi|77917823|ref|YP_355638.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] gi|77543906|gb|ABA87468.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 162 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 V+ +L Q+ GWVS +E+ A IL ++ ++V EIATFY + PVG R + VC + Sbjct: 27 VLDVLHAIQDANGWVSDEGVELAAIILGLSPLQVEEIATFYDKIYRCPVG-RKVIHVCDS 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C RG E L+ + + P +DG + C GAC AP V IGK Y + Sbjct: 86 ICCWSRGGEALMLRLQQLLGIAPGETTADGMFTLLPTCCLGACGEAPAVRIGKTLYGQVA 145 Query: 162 PERLEEIIDAFST 174 E+LE I+D+ T Sbjct: 146 LEQLESILDSERT 158 >gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240355] Length = 157 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG + + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGVNAADYLKQKLGIGFGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|149365542|ref|ZP_01887577.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125] gi|218929638|ref|YP_002347513.1| NADH dehydrogenase subunit E [Yersinia pestis CO92] gi|115348249|emb|CAL21177.1| NADH dehydrogenase I chain E [Yersinia pestis CO92] gi|149291955|gb|EDM42029.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125] Length = 172 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 9 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 66 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 67 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 125 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 171 >gi|149927545|ref|ZP_01915799.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105] gi|149823818|gb|EDM83044.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105] Length = 159 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE + +++ +++YP + SAV+ L AQ + GW+ AIE VA L++ I Sbjct: 1 MKLSENAYRLIDKELTKYPADQKISAVMAALRIAQVELGWLPSEAIEAVAEYLEIQPIAA 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY + VG ++ + VC PC L G E + K+ DG + Sbjct: 61 YEVATFYNMYDTKKVG-KSKIVVCTNLPCALSGGTDAAEYLKKKLGIDYNETTKDGLFTL 119 Query: 136 EEVECQGACVNAPMVMI 152 +E EC GAC ++P++++ Sbjct: 120 KEGECMGACGDSPVMLV 136 >gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC 13091] gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC 13091] Length = 157 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|77918445|ref|YP_356260.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter carbinolicus DSM 2380] gi|77544528|gb|ABA88090.1| formate dehydrogenase gamma subunit [Pelobacter carbinolicus DSM 2380] Length = 163 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A+IP+L AQ+ G++ +E ++ L + + V + TFY+QF L P G R ++VC Sbjct: 31 GALIPVLQGAQDIYGYLPGEVLETISKELKIPFSEVFGVVTFYSQFHLKPRG-RNIIRVC 89 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG K+ E + + D + E V C GAC AP++MI DT+ Sbjct: 90 LGTACHVRGGSKIFEGLKEILGVDNGGTTEDLRFTLESVACIGACGLAPVIMINDDTHGR 149 Query: 160 LTPERLEEIIDAF 172 LT + L++I++ + Sbjct: 150 LTNDGLDKILEQY 162 >gi|317492620|ref|ZP_07951047.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919370|gb|EFV40702.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 166 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS + LA+EE F S+ + + Y R +A I L Q++ GWV A Sbjct: 1 MSDQSLAKEEV----FVLSDSAREAIEHEKHHYEDPR--AASIEALKIVQKEHGWVPDGA 54 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A +LD+ V +ATFY+Q PVG R ++ C + C + G + + K+ Sbjct: 55 IYAIAEVLDIPAADVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHINGYQGIQAALERKL 113 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + KP DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 114 NIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPENVVELLEQY 165 >gi|225016112|ref|ZP_03705345.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum DSM 5476] gi|224951109|gb|EEG32318.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F +EE A + VI +Y A +P+L AQE G++ ++A L + + Sbjct: 10 FKGTEEQAQRLQAVIEKY--KDVPGANMPVLQEAQEIYGYLPIEVQSMIAEGLGVPIETL 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 I TFY+QF LSP G + ++ VC T C ++G L++ ++ +P SDG S Sbjct: 68 YGITTFYSQFSLSPKG-KYNISVCMGTACYVKGSGALLDRITKRLGIQPEETTSDGRFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ I + Y LT + ++ I+D + Sbjct: 127 TACRCIGACGLAPVLTINDEVYGRLTVDDIDGILDKY 163 >gi|325003720|ref|ZP_08124832.1| NADH dehydrogenase subunit E [Pseudonocardia sp. P1] Length = 276 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 16/187 (8%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A E P S +F E + E I++YP R SA++PLL Q EG+VS+ I A Sbjct: 25 APPEPSPVSPTFDELTRARTKETIAQYPEPR--SALLPLLHLVQSVEGYVSQDGIRYCAE 82 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKP 124 L++ V +ATFYT ++ SP G V VC T C G + + + + +P Sbjct: 83 ALELTTAEVSAVATFYTMYKRSPCGEHL-VSVCTNTLCAALGGDDIYARLQTHLGSEDRP 141 Query: 125 LHR-------NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 L + G+++ E EC AC AP++ + + +++ + E E++DA G+ Sbjct: 142 LGHEETVGEPGTTGSITLEHAECLAACDLAPVLQVDYEYFDNQSVESAVELVDALRRGE- 200 Query: 178 DTIRPGP 184 RP P Sbjct: 201 ---RPQP 204 >gi|312135111|ref|YP_004002449.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor owensensis OL] gi|311775162|gb|ADQ04649.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor owensensis OL] Length = 160 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160 >gi|206901697|ref|YP_002250292.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus thermophilum H-6-12] gi|206740800|gb|ACI19858.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus thermophilum H-6-12] Length = 161 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L+ Q++ ++ I + LD++ ++ +ATFY QF L P G + + VC Sbjct: 24 LIKILLDVQKEYRYLPEDVINYIGVALDISPAKIYGVATFYAQFSLKPKG-KYTILVCDG 82 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G LI + +++ P D S ++V C GAC AP+++I ++ Y +LT Sbjct: 83 TACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCLGACALAPVMVINEEVYGNLT 142 Query: 162 PERLEEII 169 PE+++EI+ Sbjct: 143 PEKVKEIL 150 >gi|258516626|ref|YP_003192848.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780331|gb|ACV64225.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum acetoxidans DSM 771] Length = 163 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP+L AQ+ G++ + ++ ++ L + + ++ ++TFY QF L P G R V+V Sbjct: 30 KGAIIPVLQGAQDIYGYLPKEVMQQISKDLRVPFSKIYGVSTFYAQFHLKPRG-RNIVRV 88 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K+ E + D + E V C GAC AP++MI DT+ Sbjct: 89 CQGTACHVRGGKKIFEAVEKVLGISEGGTTEDLRFTLETVACLGACGLAPVLMINDDTHG 148 Query: 159 DLTPERLEEIIDAF 172 L P ++ I++ + Sbjct: 149 RLVPGDIQGILEQY 162 >gi|217967305|ref|YP_002352811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217336404|gb|ACK42197.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 162 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 4/157 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FS+ + + +++ ++ S + ++I +L QE+ G++ + A+E+V+ L + + Sbjct: 5 LKFSDYAQRELEKILDQF--SSTKGSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEI 62 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+ F+L P G +++C T C ++G L+ +I K DG S Sbjct: 63 YGVVTFYSFFRLEPQGKHV-IRLCMGTACYVKGAADLL-TALEQIGLKEGKVTEDGYFSL 120 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C GAC AP +MI ++ Y LTP++L+++I+ F Sbjct: 121 DLVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENF 157 >gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256] gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256] Length = 157 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ + +YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELVKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970] gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970] Length = 157 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|302871904|ref|YP_003840540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574763|gb|ADL42554.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor obsidiansis OB47] Length = 160 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFRKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160 >gi|222529286|ref|YP_002573168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312622468|ref|YP_004024081.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor kronotskyensis 2002] gi|222456133|gb|ACM60395.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312202935|gb|ADQ46262.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 160 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + R A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +++I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVKDILSRY 160 >gi|295798104|emb|CAX68923.1| NADH-quinone oxidoreductase 24 kD subunit E [uncultured bacterium] Length = 161 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 3/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + + + YP R + ++P+L QEQ ++ E VA + V E+ TFYT F Sbjct: 17 DSICANYPVKR--AGLLPVLRLIQEQYSFIPPHVEEQVAQYFQIPPADVREVMTFYTLFH 74 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P + + VC T C L G ++++ K+ KP +DG + +EVEC GAC Sbjct: 75 SKP-RAKCEINVCRTLSCSLMGAKEMVAYISEKLGIKPGETTADGRFTLKEVECLGACEI 133 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172 APM +G + LT E+++ II + Sbjct: 134 APMAQVGHEYVGPLTREKIDHIIQQY 159 >gi|160935013|ref|ZP_02082399.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753] gi|156866466|gb|EDO59838.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753] Length = 164 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FS ++E + E+I ++ A++P+L AQ G++ ++VA+ L + V Sbjct: 10 FSGTKEQEAQLFEIIEKHKNE--PGAIMPVLQEAQNVYGYLPIEVQQMVADGLGVPLSEV 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L+P G + ++ VC T C ++G K++E ++ + DG S Sbjct: 68 FGVATFYSQFSLTPKG-KYNISVCLGTACYVKGSGKILEELSKELGIEAEECTEDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ I D Y L PE ++ I+ + Sbjct: 127 TACRCIGACGLAPVITINDDVYGRLVPEDVKGILAKY 163 >gi|148653493|ref|YP_001280586.1| NADH dehydrogenase subunit E [Psychrobacter sp. PRwf-1] gi|148572577|gb|ABQ94636.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter sp. PRwf-1] Length = 170 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E I YP +R +A + L Q++ GWV+ A + +AN+LD+ + +ATF+ + Sbjct: 26 IHEYIHHYPHAR--AASLDALKLVQKRNGWVNDAQVNAIANLLDVPVTDIEGVATFFNRI 83 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 SPVG R + VC + C L G E+L + + + +DG + + C G C Sbjct: 84 YRSPVG-RHVILVCDSIACYLTGYEELAAELKTTLGIEFGQTTADGRFTLLPICCLGNCD 142 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P V+I +DT+ ++P + E+++ + Sbjct: 143 KGPSVLIDEDTFGPVSPSEVAELLEYY 169 >gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107] Length = 157 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 +++YP + +SA++ L AQ ++GW++ I VA+ + + + E+ATFY + L P Sbjct: 14 LAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYEVATFYNMYDLEP 73 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG + + VC PC LRG E + K+ DG + E EC GAC +AP+ Sbjct: 74 VG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVESECMGACGDAPV 132 Query: 150 VMI 152 +++ Sbjct: 133 MLV 135 >gi|158319327|ref|YP_001511834.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158139526|gb|ABW17838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 170 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++S+Y + ++I +L QE ++ A+ ++ + ++ +ATFYTQF Sbjct: 23 LKSILSKYEGKK--GSLISILQDVQEYYNYLPMDALNYISVETGIKPAKIHGVATFYTQF 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L PVG + + +C T C + G + + E + ++H + D + V C G C Sbjct: 81 RLKPVGEKL-IMLCQGTACHVNGSKAVEEAIKEELHIQDGETTEDNLFTLINVACLGCCS 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +P++MI DTY +LTPE+++ II + Q Sbjct: 140 LSPVMMINDDTYGNLTPEKVKSIIREIKSAQ 170 >gi|217966956|ref|YP_002352462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217336055|gb|ACK41848.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 161 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I +L+ Q++ ++ I + LD+ ++ +ATFY QF L P G + + V Sbjct: 21 KDNLIKILLDIQKEYRYIPEDVINYIGVALDIPPAKIYGVATFYAQFSLKPKG-KYTILV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G LI + +++ P D S ++V C GAC AP+++I ++ Y Sbjct: 80 CDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCLGACALAPVMVINEEVYG 139 Query: 159 DLTPERLEEII 169 +LTPE+++EI+ Sbjct: 140 NLTPEKVKEIL 150 >gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC 33394] gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC 33394] Length = 157 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ +++YP + +SA++ L AQ + G+++ IE VA + + I E+ATFY + Sbjct: 10 IDTELAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYEVATFYNMY 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L PVG + + VC PC LRG E + K+ +DG + E EC GAC Sbjct: 70 DLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIDYGETTADGKFTLVEGECMGACG 128 Query: 146 NAPMVMIGKDT 156 +AP++++ T Sbjct: 129 DAPVMLLNNHT 139 >gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090] gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945] gi|239999840|ref|ZP_04719764.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18] gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140] gi|240081586|ref|ZP_04726129.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|240113868|ref|ZP_04728358.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae MS11] gi|240116599|ref|ZP_04730661.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID18] gi|240118823|ref|ZP_04732885.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID1] gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1] gi|240124362|ref|ZP_04737318.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID332] gi|240126574|ref|ZP_04739460.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-92-679] gi|240129039|ref|ZP_04741700.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-93-1035] gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|260439640|ref|ZP_05793456.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62] gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA 1090] gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945] gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62] Length = 157 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|288574745|ref|ZP_06393102.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570486|gb|EFC92043.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 156 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 6/151 (3%) Query: 27 NEVISRY-----PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 EVI+R P +IP+L Q + G++ A++ V+ L + + +ATF Sbjct: 6 TEVIARTSEIVSPWKSKHGGLIPILQSIQGEFGYLPTEALKTVSKDLKIPEAEIYGVATF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L+P G R V+VC T C +RG +K++++ + D + E V C Sbjct: 66 YAQFHLNPRG-RHVVRVCRGTACHVRGSQKILDMVKEITGINENETTKDLRFTIEPVACL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++M+ T+ L P ++ EI++ F Sbjct: 125 GACGLAPVMMVDDQTFGRLEPSKVREILEKF 155 >gi|207723877|ref|YP_002254275.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2] gi|207742739|ref|YP_002259131.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum IPO1609] gi|206589082|emb|CAQ36044.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2] gi|206594133|emb|CAQ61060.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum IPO1609] Length = 141 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L AQ ++GWVS ++ VA L+M + V E+ATFY + PVG R + VC PC Sbjct: 4 LAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLSVCTNLPCA 62 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY--EDLTPE 163 L G E+ + + K+ +DG + +E EC GAC +AP VMI +T+ ++ E Sbjct: 63 LSGGERAADYLKQKLGIGFNETTADGNFTLKEGECMGACGDAP-VMIVNNTHMCSFMSNE 121 Query: 164 RLEEII 169 +L+ +I Sbjct: 122 KLDALI 127 >gi|325972138|ref|YP_004248329.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] gi|324027376|gb|ADY14135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] Length = 157 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 14/165 (8%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E F P+ SF +E W + P +I +L + Q+++G++SR A ++VA Sbjct: 6 EFTFSPALVSFIKE---W------KTKPGN----LIMVLHKVQQEQGYISREAADLVAAQ 52 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 LD+ + + +FY F+L+ G + ++QVC T C L+G + LI+ ++H Sbjct: 53 LDVPLATIWGVVSFYHFFKLTKPG-KHNIQVCLGTACYLKGAQPLIDEIDKQLHLPVGAV 111 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + V C G C AP++ +G + + +T +++ II F Sbjct: 112 TEDGNFSLDAVRCVGCCGLAPVMTVGGEVFGKVTKDQISGIIAKF 156 >gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442] gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442] Length = 157 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGEITPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLV 135 >gi|325290780|ref|YP_004266961.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271] gi|324966181|gb|ADY56960.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271] Length = 161 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQE G +S + V++ L++ V +ATFY+QF+ +P+G R ++VC Sbjct: 31 LITVLQKAQEIYGHLSEEIMRVISEKLEIPAAEVFGVATFYSQFRFTPMG-RNVIRVCMG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG ++ + K DG + E V C GAC AP++ I Y ++T Sbjct: 90 TACHVRGALNVLRTIERGLGIKAGETTQDGRFTLETVACIGACGLAPVISINNMVYGNMT 149 Query: 162 PERLEEIIDAF 172 P+ + + +D + Sbjct: 150 PQAVMQTLDKY 160 >gi|15802832|ref|NP_288859.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 EDL933] gi|15832423|ref|NP_311196.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. Sakai] gi|168748134|ref|ZP_02773156.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4113] gi|168755037|ref|ZP_02780044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4401] gi|168761276|ref|ZP_02786283.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4501] gi|168767911|ref|ZP_02792918.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4486] gi|168772989|ref|ZP_02797996.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4196] gi|168780140|ref|ZP_02805147.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4076] gi|168787192|ref|ZP_02812199.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC869] gi|168798455|ref|ZP_02823462.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC508] gi|195935662|ref|ZP_03081044.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. EC4024] gi|208807945|ref|ZP_03250282.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4206] gi|208812470|ref|ZP_03253799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4045] gi|208821285|ref|ZP_03261605.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4042] gi|209399385|ref|YP_002271694.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4115] gi|217327662|ref|ZP_03443745.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. TW14588] gi|254794177|ref|YP_003079014.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. TW14359] gi|261223261|ref|ZP_05937542.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. FRIK2000] gi|261259189|ref|ZP_05951722.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. FRIK966] gi|291283526|ref|YP_003500344.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7 str. CB9615] gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. EDL933] gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. Sakai] gi|187771310|gb|EDU35154.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4196] gi|188017168|gb|EDU55290.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4113] gi|189002112|gb|EDU71098.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4076] gi|189357595|gb|EDU76014.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4401] gi|189362963|gb|EDU81382.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4486] gi|189368261|gb|EDU86677.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4501] gi|189372933|gb|EDU91349.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC869] gi|189378906|gb|EDU97322.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC508] gi|208727746|gb|EDZ77347.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4206] gi|208733747|gb|EDZ82434.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4045] gi|208741408|gb|EDZ89090.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4042] gi|209160785|gb|ACI38218.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4115] gi|209765098|gb|ACI80861.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765100|gb|ACI80862.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765102|gb|ACI80863.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765104|gb|ACI80864.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765106|gb|ACI80865.1| NADH dehydrogenase I chain E [Escherichia coli] gi|217320029|gb|EEC28454.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. TW14588] gi|254593577|gb|ACT72938.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. TW14359] gi|290763399|gb|ADD57360.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7 str. CB9615] gi|320192094|gb|EFW66739.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. EC1212] gi|320641112|gb|EFX10591.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. G5101] gi|320646500|gb|EFX15419.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. 493-89] gi|320651597|gb|EFX19977.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. H 2687] gi|320657349|gb|EFX25151.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663051|gb|EFX30368.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. USDA 5905] gi|320667869|gb|EFX34777.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. LSU-61] gi|326339636|gb|EGD63447.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. 1125] gi|326344098|gb|EGD67859.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. 1044] Length = 166 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ +LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHANLTPEAIPELLERY 165 >gi|296103966|ref|YP_003614112.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058425|gb|ADF63163.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 166 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F SE + + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 8 QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 125 RFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQY 165 >gi|302336897|ref|YP_003802103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634082|gb|ADK79509.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 169 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L + QE+ ++ + +A L+++ R+ IATFY+ F L P G ++VC Sbjct: 31 IIPILQKVQEEYRYLPEEVLLFLATSLEISPARLYGIATFYSHFSLEPKGKHV-IKVCDG 89 Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G LIE R+ + +K + SD + E V C GAC AP+V+I + + Sbjct: 90 TACHVKGSGALIETLRSMLALEKGIKTTSDMLFTLETVSCLGACGLAPVVVIDDTVHGQM 149 Query: 161 TPERLEEII 169 TP+++ +I Sbjct: 150 TPDKVRALI 158 >gi|282891846|ref|ZP_06300326.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498279|gb|EFB40618.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 171 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +EE+ + E+ RYP R SA+IP L AQ + G++ R VA + D+ V Sbjct: 2 LTEETRKSIIELQKRYPNKR--SALIPALHLAQAEIGYLPRDIQNEVAELFDIDSNEVNA 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY F PVG + VC CMLRG + +++ ++++ +P +DG + Sbjct: 60 VVTFYDMFFDQPVGKHL-IHVCKNLSCMLRGADGVLKKICHRLNVEPHETTADGEFTVIP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EC AC APMV++ ++ + +E I++ G P P Sbjct: 119 SECLAACDRAPMVLVDDKVVGPISEQDVEHILEEAKKSPG---HPSP 162 >gi|219851496|ref|YP_002465928.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula palustris E1-9c] gi|219545755|gb|ACL16205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula palustris E1-9c] Length = 162 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%) Query: 26 VNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++++I+RY P R V+ +L Q QEG++ R +E ++ LD+ + + TFY Sbjct: 6 LDQIIARYASPTGR----VLGILSEVQHQEGYIPRDVLETLSQKLDLPLSDLYSLVTFYA 61 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--------- 134 F L PVG + VC T C ++G L+E ++ +H + + DG S Sbjct: 62 LFSLKPVGEHV-ITVCMGTACHVKGAVSLLETLQDLLHLEGEAADEDGKFSLTTEDNRFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E C GAC AP++ + + Y +TPE L I++ + Sbjct: 121 LEIARCFGACSIAPVLRVDGNLYGYVTPESLPGILEGYG 159 >gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit nuoE [Escherichia coli] Length = 166 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S V + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAVEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165 >gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS] gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS] gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS] gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS] Length = 294 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY+ ++ + Sbjct: 46 IVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRT 103 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGAC 144 P G V VC T C + G +++++ ++ + Q ++ E +EC AC Sbjct: 104 PTGDY-LVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAAC 162 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 AP+VM+ + +++ TP +++D+ G Sbjct: 163 DYAPVVMVNWEFFDNQTPASARDLVDSLRAG 193 >gi|77919442|ref|YP_357257.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545525|gb|ABA89087.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 168 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 78/132 (59%), Gaps = 1/132 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I L +AQ G++ E VAN +++ ++V + +FYT F + P G + + VC Sbjct: 38 LITALHKAQSLFGYLPEEIQEYVANAMNVPVVQVFGVVSFYTFFTMIPKG-KHPISVCMG 96 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +K+++ +N+++ DG S + + C GAC AP+V++G+ Y ++T Sbjct: 97 TACFVKGADKVVDAFKNQLNVAVSEVTEDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 156 Query: 162 PERLEEIIDAFS 173 P+++++II F+ Sbjct: 157 PDQVKDIIAEFA 168 >gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 610 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 4/166 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70 +P S + E + EV + + + V+P+L Q+ G W+ A+++VA L++ Sbjct: 6 KPVSAELTSEQVKRIREVCQQL--GKVKGKVLPILHAVQDICGNWLPLEALQLVAKELEI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 Y + + TFY+ + ++P G R +++C + PC + G E ++E + ++ + SD Sbjct: 64 PYGYLYGVLTFYSMYSVTPRG-RYIIRMCESAPCHVNGAENILEALKEELGVEVGGTTSD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 G + E C G C AP + I + + +LT +++EI+D + G+ Sbjct: 123 GLFTLELTACLGTCEVAPAMQINEVVFGNLTGAKVKEILDNYRAGK 168 >gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS] gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS] Length = 294 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY+ ++ + Sbjct: 46 IVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRT 103 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGAC 144 P G V VC T C + G +++++ ++ + Q ++ E +EC AC Sbjct: 104 PTGDY-LVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAAC 162 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 AP+VM+ + +++ TP +++D+ G Sbjct: 163 DYAPVVMVNWEFFDNQTPTSARDLVDSLRAG 193 >gi|294788077|ref|ZP_06753321.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri ATCC 29453] gi|294484370|gb|EFG32053.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri ATCC 29453] Length = 157 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + + I E Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMGALRIAQVEKGYLAAETIEFVAQYVGIPAIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI 152 EC GAC +AP++++ Sbjct: 121 GECMGACGDAPVMLL 135 >gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 574 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 5/152 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ ++ RYP QSA++P LM AQ E + + I VA ++D+ + + +AT+Y+ Sbjct: 10 IHRLLGRYPEK--QSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYGLATYYSM 67 Query: 85 FQL-SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + + PVG R H+QV P L G ++++ ++ + DG + EVEC + Sbjct: 68 YNVEKPVG-RYHLQVDTNIPATLMGAGEILDHLEKTLNIRAGETTPDGLFTLSEVECLAS 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C P++ + YE++T E+++ ++D+ G Sbjct: 127 CGTCPVIQVNDVYYENMTREKVDSLLDSLRKG 158 >gi|217076872|ref|YP_002334588.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217036725|gb|ACJ75247.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 157 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ ++ + +I +L+ Q++ + + + ++ LD+ ++ +ATFY QF Sbjct: 8 VEEILKKHGYEK--KNLIKILLDVQKEYRHIPKEVVNYLSVALDIPPAKIFGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + +C T C + G LI+ ++ KP D S ++V C GAC Sbjct: 66 SLKPKGEYT-ILICDGTACHMEGSMSLIKAIEEEVGVKPGEVTQDLKFSLDKVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 AP ++I + Y +LTPE+ +EI+ G Sbjct: 125 LAPAMVINGEVYGNLTPEKTKEILRKLKEG 154 >gi|261416515|ref|YP_003250198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372971|gb|ACX75716.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327348|gb|ADL26549.1| NADH-quinone oxidoreductase, E subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 353 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 +++SRYP Q+A++ +L Q GWV R I AN+ A L +ATFYT + Sbjct: 66 DLLSRYPVG--QAALLEVLWLVQGVFGWVPREGIRWAANVCGCAPAHALGVATFYTMYNH 123 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 +P G + +Q C C ++G LI + ++ K DG + +VEC G+C N Sbjct: 124 APKG-KFLLQFCRNISCTIKGAPSLIAYVEHALNIKTGETTPDGLFTILQVECLGSCGNG 182 Query: 148 PMVMIGKDTYED 159 PM+++ D D Sbjct: 183 PMMLVNDDFATD 194 >gi|222099660|ref|YP_002534228.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM 4359] gi|221572050|gb|ACM22862.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM 4359] Length = 165 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE ++E I + + +I +L +AQE G++ +E +++ L++ +V + Sbjct: 9 EELFKELDEFIEKNNYEGKKDVLIQVLHKAQELFGYLPADVLEFISDKLNVPLSKVYGVV 68 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + ++VC T C ++G +++ E ++ P SDG S V Sbjct: 69 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVSPDEPTSDGLFSVHGVR 127 Query: 140 CQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 C GAC AP+VM+ D Y +TP+ + +II+ + Sbjct: 128 CLGACSMAPVVMVDDSDFYGRVTPDMVPQIINKY 161 >gi|255525708|ref|ZP_05392640.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296184812|ref|ZP_06853223.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255510610|gb|EET86918.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296050594|gb|EFG90017.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 166 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +++V +Y + ++ +L AQ+ G++ ++ +A+ +V +ATFY+Q Sbjct: 13 LMDKVFDKY--YKGNGNIVSMLQDAQDIYGYLPLDVLKAIADKTGNKRTKVYGVATFYSQ 70 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+L+P G +Q C T C + E + +++ P +SDG S+E V C G C Sbjct: 71 FRLNPRGKYMILQ-CQGTACHVNNSEVIGNAICDELGINPGETSSDGMFSFEHVACLGCC 129 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP++MI + Y +LTP+++ +II Sbjct: 130 SLAPVIMINGEAYGNLTPDKVRKII 154 >gi|332981825|ref|YP_004463266.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Mahella australiensis 50-1 BON] gi|332699503|gb|AEE96444.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Mahella australiensis 50-1 BON] Length = 162 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 15/172 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V+R EE+FQ + VI RY + ++P++ +AQE G++ Sbjct: 3 IEVKRELEEKFQE------------LKTVIDRY--KNMEGPLMPIMHKAQEIFGYLPLEV 48 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +A LD+ V +ATFY+ F L P G + + +C T C ++G +K+++ + ++ Sbjct: 49 QNFIAEELDIPLTDVYGVATFYSHFTLQPQG-KYTINICLGTACYVKGAQKVLDKLKEEL 107 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + + C GAC AP++MI + Y L P+ + +I+ + Sbjct: 108 KINEGETTPDGKFTIDATRCLGACGLAPVMMINGEVYGRLVPDDVPKILKRY 159 >gi|310778427|ref|YP_003966760.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309747750|gb|ADO82412.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 162 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA LD+ +V + +FY+ F ++P G + + V Sbjct: 26 QGALITVLHKAQEIFGYLPKEIQSFVAERLDLPLAKVYGVVSFYSFFTMTPKG-KYPISV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG K++E + ++ + SDG S + + C GAC AP+V++G+D + Sbjct: 85 CMGTACYVRGAGKVLEDFQKQLGIEVGETTSDGIFSIDALRCVGACGLAPVVLVGEDVFG 144 Query: 159 DLTPERLEEIIDAF 172 + ++ I+D + Sbjct: 145 KDEAKDVKTILDTY 158 >gi|289522360|ref|ZP_06439214.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504196|gb|EFD25360.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 166 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 I LL + QE G++ + + VA LD+ + +ATFY F+ P+G + +++C T Sbjct: 27 ISLLSKIQESYGYLPQEVLSRVAKELDIPEASLYGVATFYAMFRFKPLG-KYTIKLCRGT 85 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162 C ++G + + + DG + E V C G C AP++M+G+D Y LTP Sbjct: 86 ACHVQGSLLIAQEVMRHLGISEGETTDDGLFTLELVACLGCCSLAPVMMVGEDVYGRLTP 145 Query: 163 ERLEEIIDAFST---GQGD 178 +R +++D++ T G+G+ Sbjct: 146 DRAVKVLDSYRTNKRGEGN 164 >gi|154249677|ref|YP_001410502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] gi|154153613|gb|ABS60845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 164 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQE GW+ + E VA L + V + TFY F P G + ++VC Sbjct: 28 LIGVLHKAQELFGWLPQEVQEHVAERLGVPISEVYGVVTFYNFFATKPKG-KNQIKVCLG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDL 160 T C ++G ++++E ++ K DG S V C GAC AP+V++G KD Y + Sbjct: 87 TACYVKGADRVMERFLEELGVKAEEVTEDGLFSVHPVRCLGACSMAPVVLVGEKDFYGKV 146 Query: 161 TPERLEEIIDAFSTG 175 TP+ + +II A+ G Sbjct: 147 TPDMVSKIIAAYRRG 161 >gi|268323920|emb|CBH37508.1| putative Fe-only hydrogenase [uncultured archaeon] Length = 157 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E+I+ S ++A++ L Q G++++ AI + + LD+ + + + TFY Sbjct: 10 VDEIINDIGKS--EAALLQCLEAVQRDVGYITQDAITYLRDELDVPSVEIYGVMTFYGML 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G + ++VC + PC L G + +IE N++ K D + E V C G C Sbjct: 68 TAEQQG-KYVIRVCNSLPCYLNGSKMIIETLENELGIKSGETAEDANFTLETVACLGLCD 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 NAP ++I ++ Y +LT E+++EII A Sbjct: 127 NAPAMIINREIYGNLTEEKVKEIIKA 152 >gi|283786353|ref|YP_003366218.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium ICC168] gi|282949807|emb|CBG89430.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium ICC168] Length = 166 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F SE + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + ++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERY 165 >gi|221090843|ref|XP_002168613.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Hydra magnipapillata] Length = 101 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%) Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V + K+ P D + EVEC GACVNAPMV I + YEDL P + EII++ Sbjct: 1 MSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESL 60 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSL 200 + +G +PGP+ R +S PAGGLTSL Sbjct: 61 A--KGIIPKPGPRSGRFASEPAGGLTSL 86 >gi|261340673|ref|ZP_05968531.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus ATCC 35316] gi|288317087|gb|EFC56025.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus ATCC 35316] gi|295098076|emb|CBK87166.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 166 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F SE + + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 8 QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYEIAKVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 125 RFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQY 165 >gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis SK121] gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis SK121] Length = 274 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 13/160 (8%) Query: 29 VISRY-----PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 VI+RY + +SA++PLL Q ++G+++ A I+ + L + V ++TFY+ Sbjct: 48 VIARYREPDAAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYS 107 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDGTLSWE 136 ++ P G V VC T C + G + ++ + SDG ++ E Sbjct: 108 MYRRGPTGEYL-VGVCTNTLCAIMGGDDILAALEEHLGSAGSRDEGGHSISTSDGKITLE 166 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +EC AC AP++MI + +++ TPE ++DA G+ Sbjct: 167 HIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGE 206 >gi|293415578|ref|ZP_06658221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185] gi|291433226|gb|EFF06205.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185] Length = 166 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165 >gi|302388829|ref|YP_003824650.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM 16646] gi|302199457|gb|ADL07027.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM 16646] Length = 175 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I +L + Q+ G++ R A+ +A + + +V +ATFY QF+L P+G + VC Sbjct: 37 GSLITVLQKVQDIYGYLPRKALYHIAREIGVKPAKVFGVATFYAQFRLKPIGKHL-IMVC 95 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C + G E + +++ K +DG + + V C G C AP++MI + Y Sbjct: 96 HGTACHVNGAELITSALCDELKIKDGETTADGLFTLQNVACLGCCSLAPVMMIDGEAYGK 155 Query: 160 LTPERLEEII 169 LTP++ ++I Sbjct: 156 LTPDKARDVI 165 >gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4] gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4] Length = 274 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 29 VISRY--PPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 VI+RY P S +SA++PLL Q ++G+++ A I+ + L + V ++TFY+ Sbjct: 48 VIARYREPDSAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYS 107 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDGTLSWE 136 ++ P G V VC T C + G + ++ + SDG ++ E Sbjct: 108 MYRRGPTG-EYLVGVCTNTLCAIMGGDDILAALEEHLGSTGSRDEGGHSISTSDGKITLE 166 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +EC AC AP++MI + +++ TPE ++DA G+ Sbjct: 167 HIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGE 206 >gi|325291005|ref|YP_004267186.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] gi|324966406|gb|ADY57185.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] Length = 154 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 42 VIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I +++ Q+ G ++ + +E VA L+M +V + TFY F G + ++VC Sbjct: 18 LIQIMLELQQLSGNNYLPQEWVEEVAKALEMPMSKVYGVMTFYAMFDTEKRG-KNLIEVC 76 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + PC + G E ++E+ + KP DG + E C GAC AP + IG++ Y + Sbjct: 77 KSGPCHVAGAENVMELLEEALRIKPGETTDDGLFTLEYSACFGACDIAPAIKIGENVYGN 136 Query: 160 LTPERLEEIIDAFSTG 175 LT +L+EII+++ G Sbjct: 137 LTEAKLKEIINSYKEG 152 >gi|16130220|ref|NP_416788.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. MG1655] gi|24113657|ref|NP_708167.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 301] gi|26248672|ref|NP_754712.1| NADH dehydrogenase subunit E [Escherichia coli CFT073] gi|30063711|ref|NP_837882.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 2457T] gi|74312803|ref|YP_311222.1| NADH dehydrogenase subunit E [Shigella sonnei Ss046] gi|82544763|ref|YP_408710.1| NADH dehydrogenase subunit E [Shigella boydii Sb227] gi|89109103|ref|AP_002883.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. W3110] gi|91211577|ref|YP_541563.1| NADH dehydrogenase subunit E [Escherichia coli UTI89] gi|110642489|ref|YP_670219.1| NADH dehydrogenase subunit E [Escherichia coli 536] gi|110806248|ref|YP_689768.1| NADH dehydrogenase subunit E [Shigella flexneri 5 str. 8401] gi|117624474|ref|YP_853387.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1] gi|157154944|ref|YP_001463628.1| NADH dehydrogenase subunit E [Escherichia coli E24377A] gi|157161773|ref|YP_001459091.1| NADH dehydrogenase subunit E [Escherichia coli HS] gi|170019406|ref|YP_001724360.1| NADH dehydrogenase subunit E [Escherichia coli ATCC 8739] gi|170081902|ref|YP_001731222.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. DH10B] gi|170683908|ref|YP_001744483.1| NADH dehydrogenase subunit E [Escherichia coli SMS-3-5] gi|170767591|ref|ZP_02902044.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii TW07627] gi|187730819|ref|YP_001881106.1| NADH dehydrogenase subunit E [Shigella boydii CDC 3083-94] gi|188496197|ref|ZP_03003467.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638] gi|191170105|ref|ZP_03031659.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11] gi|193062229|ref|ZP_03043324.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22] gi|193068223|ref|ZP_03049187.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019] gi|194427174|ref|ZP_03059725.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171] gi|194433323|ref|ZP_03065603.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012] gi|194436177|ref|ZP_03068279.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1] gi|209919733|ref|YP_002293817.1| NADH dehydrogenase subunit E [Escherichia coli SE11] gi|215487498|ref|YP_002329929.1| NADH dehydrogenase subunit E [Escherichia coli O127:H6 str. E2348/69] gi|218548266|ref|YP_002382057.1| NADH dehydrogenase subunit E [Escherichia fergusonii ATCC 35469] gi|218554841|ref|YP_002387754.1| NADH dehydrogenase subunit E [Escherichia coli IAI1] gi|218559198|ref|YP_002392111.1| NADH dehydrogenase subunit E [Escherichia coli S88] gi|218690445|ref|YP_002398657.1| NADH dehydrogenase subunit E [Escherichia coli ED1a] gi|218695884|ref|YP_002403551.1| NADH dehydrogenase subunit E [Escherichia coli 55989] gi|218700759|ref|YP_002408388.1| NADH dehydrogenase subunit E [Escherichia coli IAI39] gi|218705815|ref|YP_002413334.1| NADH dehydrogenase subunit E [Escherichia coli UMN026] gi|227887341|ref|ZP_04005146.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972] gi|237704759|ref|ZP_04535240.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|238901460|ref|YP_002927256.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952] gi|253772793|ref|YP_003035624.1| NADH dehydrogenase subunit E [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162294|ref|YP_003045402.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606] gi|256017559|ref|ZP_05431424.1| NADH dehydrogenase subunit E [Shigella sp. D9] gi|256022031|ref|ZP_05435896.1| NADH dehydrogenase subunit E [Escherichia sp. 4_1_40B] gi|260844872|ref|YP_003222650.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2 str. 12009] gi|260856329|ref|YP_003230220.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11 str. 11368] gi|260869008|ref|YP_003235410.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H- str. 11128] gi|293405751|ref|ZP_06649743.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412] gi|293410645|ref|ZP_06654221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354] gi|293446622|ref|ZP_06663044.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088] gi|297519442|ref|ZP_06937828.1| NADH dehydrogenase subunit E [Escherichia coli OP50] gi|298381434|ref|ZP_06991033.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302] gi|300818114|ref|ZP_07098326.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1] gi|300822156|ref|ZP_07102298.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7] gi|300896959|ref|ZP_07115440.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1] gi|300903670|ref|ZP_07121586.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1] gi|300918550|ref|ZP_07135140.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1] gi|300924544|ref|ZP_07140508.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1] gi|300931362|ref|ZP_07146693.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1] gi|300936850|ref|ZP_07151739.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1] gi|300948571|ref|ZP_07162664.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1] gi|300956455|ref|ZP_07168744.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1] gi|300981073|ref|ZP_07175345.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1] gi|300983380|ref|ZP_07176564.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1] gi|301024083|ref|ZP_07187797.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1] gi|301026955|ref|ZP_07190348.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1] gi|301049038|ref|ZP_07196023.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1] gi|301303256|ref|ZP_07209381.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1] gi|301328777|ref|ZP_07221825.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1] gi|301647618|ref|ZP_07247414.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1] gi|307138949|ref|ZP_07498305.1| NADH dehydrogenase subunit E [Escherichia coli H736] gi|307311155|ref|ZP_07590799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W] gi|309793164|ref|ZP_07687592.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7] gi|312967583|ref|ZP_07781798.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75] gi|312973456|ref|ZP_07787628.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70] gi|331642923|ref|ZP_08344058.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736] gi|331647940|ref|ZP_08349032.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605] gi|331653727|ref|ZP_08354728.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718] gi|331658367|ref|ZP_08359329.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206] gi|331663800|ref|ZP_08364710.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143] gi|331668983|ref|ZP_08369831.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271] gi|331678231|ref|ZP_08378906.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591] gi|331683956|ref|ZP_08384552.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299] gi|332278569|ref|ZP_08390982.1| NADH dehydrogenase subunit I E [Shigella sp. D9] gi|84028748|sp|P0AFD2|NUOE_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E; AltName: Full=NUO5 gi|84028749|sp|P0AFD1|NUOE_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E; AltName: Full=NUO5 gi|84028750|sp|P0AFD3|NUOE_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [Escherichia coli CFT073] gi|431019|gb|AAA03536.1| NADH dehydrogenase [Escherichia coli] gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. MG1655] gi|1799646|dbj|BAA16114.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K12 substr. W3110] gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 301] gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 2457T] gi|73856280|gb|AAZ88987.1| NADH dehydrogenase I chain E [Shigella sonnei Ss046] gi|81246174|gb|ABB66882.1| NADH dehydrogenase I chain E [Shigella boydii Sb227] gi|91073151|gb|ABE08032.1| NADH dehydrogenase I chain E [Escherichia coli UTI89] gi|110344081|gb|ABG70318.1| NADH dehydrogenase I chain E [Escherichia coli 536] gi|110615796|gb|ABF04463.1| NADH dehydrogenase I chain E [Shigella flexneri 5 str. 8401] gi|115513598|gb|ABJ01673.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1] gi|157067453|gb|ABV06708.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli HS] gi|157076974|gb|ABV16682.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E24377A] gi|169754334|gb|ACA77033.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli ATCC 8739] gi|169889737|gb|ACB03444.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. DH10B] gi|170123925|gb|EDS92856.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii TW07627] gi|170521626|gb|ACB19804.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli SMS-3-5] gi|187427811|gb|ACD07085.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii CDC 3083-94] gi|188491396|gb|EDU66499.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638] gi|190909621|gb|EDV69206.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11] gi|192931895|gb|EDV84494.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22] gi|192958502|gb|EDV88941.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019] gi|194414795|gb|EDX31066.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171] gi|194418417|gb|EDX34506.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012] gi|194424905|gb|EDX40890.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1] gi|209912992|dbj|BAG78066.1| NADH dehydrogenase I chain E [Escherichia coli SE11] gi|215265570|emb|CAS09973.1| NADH: ubiquinone oxidoreductase, chain E [Escherichia coli O127:H6 str. E2348/69] gi|218352616|emb|CAU98397.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 55989] gi|218355807|emb|CAQ88420.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii ATCC 35469] gi|218361609|emb|CAQ99201.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI1] gi|218365967|emb|CAR03711.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli S88] gi|218370745|emb|CAR18558.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI39] gi|218428009|emb|CAR08930.2| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli ED1a] gi|218432912|emb|CAR13806.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli UMN026] gi|222034041|emb|CAP76782.1| NadH-quinone oxidoreductase subunit E [Escherichia coli LF82] gi|226901125|gb|EEH87384.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835691|gb|EEJ46157.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972] gi|238861869|gb|ACR63867.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952] gi|242377918|emb|CAQ32687.1| NADH:ubiquinone oxidoreductase, chain E, subunit of soluble NADH dehydrogenase fragment and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323837|gb|ACT28439.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974195|gb|ACT39866.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606] gi|253978362|gb|ACT44032.1| NADH dehydrogenase subunit E [Escherichia coli BL21(DE3)] gi|257754978|dbj|BAI26480.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11 str. 11368] gi|257760019|dbj|BAI31516.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2 str. 12009] gi|257765364|dbj|BAI36859.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H- str. 11128] gi|260448622|gb|ACX39044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli DH1] gi|281179372|dbj|BAI55702.1| NADH dehydrogenase I chain E [Escherichia coli SE15] gi|281601726|gb|ADA74710.1| NADH-quinone oxidoreductase subunit E [Shigella flexneri 2002017] gi|284922273|emb|CBG35358.1| NADH-quinone oxidoreductase subunit E [Escherichia coli 042] gi|291323452|gb|EFE62880.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088] gi|291427959|gb|EFF00986.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412] gi|291471113|gb|EFF13597.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354] gi|294493972|gb|ADE92728.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli IHE3034] gi|298278876|gb|EFI20390.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302] gi|299879502|gb|EFI87713.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1] gi|300299147|gb|EFJ55532.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1] gi|300307686|gb|EFJ62206.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1] gi|300316725|gb|EFJ66509.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1] gi|300359227|gb|EFJ75097.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1] gi|300396739|gb|EFJ80277.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1] gi|300404326|gb|EFJ87864.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1] gi|300408546|gb|EFJ92084.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1] gi|300414285|gb|EFJ97595.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1] gi|300419262|gb|EFK02573.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1] gi|300451919|gb|EFK15539.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1] gi|300458037|gb|EFK21530.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1] gi|300460824|gb|EFK24317.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1] gi|300525286|gb|EFK46355.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7] gi|300529258|gb|EFK50320.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1] gi|300841430|gb|EFK69190.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1] gi|300844839|gb|EFK72599.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1] gi|301074245|gb|EFK89051.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1] gi|306908661|gb|EFN39158.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W] gi|307554347|gb|ADN47122.1| NADH dehydrogenase I chain E [Escherichia coli ABU 83972] gi|307626179|gb|ADN70483.1| NADH dehydrogenase subunit E [Escherichia coli UM146] gi|308123450|gb|EFO60712.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7] gi|309702597|emb|CBJ01925.1| NADH-quinone oxidoreductase subunit E [Escherichia coli ETEC H10407] gi|310332051|gb|EFP99286.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70] gi|312287780|gb|EFR15685.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75] gi|312946903|gb|ADR27730.1| NADH dehydrogenase subunit E [Escherichia coli O83:H1 str. NRG 857C] gi|313651108|gb|EFS15507.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2a str. 2457T] gi|315061577|gb|ADT75904.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli W] gi|315136919|dbj|BAJ44078.1| NADH dehydrogenase subunit E [Escherichia coli DH1] gi|315255219|gb|EFU35187.1| NADH dehydrogenase subunit E [Escherichia coli MS 85-1] gi|315285915|gb|EFU45353.1| NADH dehydrogenase subunit E [Escherichia coli MS 110-3] gi|315298116|gb|EFU57385.1| NADH dehydrogenase subunit E [Escherichia coli MS 16-3] gi|315615554|gb|EFU96186.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 3431] gi|320177167|gb|EFW52179.1| NADH-ubiquinone oxidoreductase chain E [Shigella dysenteriae CDC 74-1112] gi|320178742|gb|EFW53705.1| NADH-ubiquinone oxidoreductase chain E [Shigella boydii ATCC 9905] gi|320183380|gb|EFW58232.1| NADH-ubiquinone oxidoreductase chain E [Shigella flexneri CDC 796-83] gi|320196152|gb|EFW70776.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli WV_060327] gi|320199873|gb|EFW74462.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli EC4100B] gi|323156435|gb|EFZ42590.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli EPECa14] gi|323161619|gb|EFZ47504.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E128010] gi|323168545|gb|EFZ54225.1| NADH-quinone oxidoreductase, E subunit [Shigella sonnei 53G] gi|323171967|gb|EFZ57611.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli LT-68] gi|323176790|gb|EFZ62380.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1180] gi|323184396|gb|EFZ69772.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1357] gi|323187990|gb|EFZ73285.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli RN587/1] gi|323377843|gb|ADX50111.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli KO11] gi|323936575|gb|EGB32862.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli E1520] gi|323941018|gb|EGB37205.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli E482] gi|323944798|gb|EGB40864.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli H120] gi|323952078|gb|EGB47952.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H252] gi|323956051|gb|EGB51804.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H263] gi|323961468|gb|EGB57078.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H489] gi|323967726|gb|EGB63138.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli M863] gi|323973010|gb|EGB68204.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli TA007] gi|323977514|gb|EGB72600.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli TW10509] gi|324006665|gb|EGB75884.1| NADH dehydrogenase subunit E [Escherichia coli MS 57-2] gi|324013175|gb|EGB82394.1| NADH dehydrogenase subunit E [Escherichia coli MS 60-1] gi|324020881|gb|EGB90100.1| NADH dehydrogenase subunit E [Escherichia coli MS 117-3] gi|324117837|gb|EGC11736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli E1167] gi|325496680|gb|EGC94539.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii ECD227] gi|327252555|gb|EGE64214.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli STEC_7v] gi|330912110|gb|EGH40620.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli AA86] gi|331039721|gb|EGI11941.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736] gi|331043664|gb|EGI15802.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605] gi|331048576|gb|EGI20652.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718] gi|331056615|gb|EGI28624.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206] gi|331059599|gb|EGI31576.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143] gi|331064177|gb|EGI36088.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271] gi|331074691|gb|EGI46011.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591] gi|331078908|gb|EGI50110.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299] gi|332088415|gb|EGI93533.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 5216-82] gi|332090613|gb|EGI95709.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 155-74] gi|332093637|gb|EGI98695.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 3594-74] gi|332100921|gb|EGJ04267.1| NADH dehydrogenase subunit I E [Shigella sp. D9] gi|332344066|gb|AEE57400.1| NADH oxidoreductase NuoE [Escherichia coli UMNK88] gi|332754933|gb|EGJ85298.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 4343-70] gi|332755334|gb|EGJ85698.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-671] gi|332756245|gb|EGJ86596.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2747-71] gi|332766104|gb|EGJ96314.1| nuoE [Shigella flexneri 2930-71] gi|333001429|gb|EGK20997.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri VA-6] gi|333002028|gb|EGK21594.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-218] gi|333002652|gb|EGK22212.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-272] gi|333016346|gb|EGK35677.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-304] gi|333016536|gb|EGK35866.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-227] Length = 166 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165 >gi|324112817|gb|EGC06793.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia fergusonii B253] Length = 166 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERY 165 >gi|291285961|ref|YP_003502777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883121|gb|ADD66821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio acetiphilus DSM 12809] Length = 168 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A IP+L + Q+ G++ +E +A+ L+M+ ++ + TFY QF P G + ++VC Sbjct: 29 GATIPVLQKTQDAYGFLFPELVERIADNLNMSPHQIYGVITFYAQFYTKPRG-KYIIRVC 87 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ E+ + + + D + EEV C GAC AP++MI TY + Sbjct: 88 RGTACHVQGSGRISEIVKEEFKISNGETSGDLKFTLEEVSCIGACGMAPVIMINNKTYGN 147 Query: 160 LTPERLEEIIDAFST 174 L PE +I ++ Sbjct: 148 LKPEDARKIFREYAN 162 >gi|169247657|gb|ACA51657.1| HydC [Thermoanaerobacterium saccharolyticum] Length = 160 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FSEE+ + +VI + + ++I ++ AQE G++ + ++ +++ + Sbjct: 8 FSEENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 IATFY++F L P G + + VC T C ++G +++ + K+ DG S E Sbjct: 66 IATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEA 124 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +E+I+ F Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159 >gi|154495356|ref|ZP_02034361.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC 43184] gi|154085280|gb|EDN84325.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC 43184] Length = 165 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ R E++A L + +V + TFY+ F ++P G + + VC Sbjct: 30 LINILHAAQGIFGYLPREVQEIIAGRLYIPVSKVYGVVTFYSFFTMTPKG-KYPISVCLG 88 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EK++E + ++ K SDG S + + C GAC AP+V I Y LT Sbjct: 89 TACYVRGAEKVLEEFQRQLEIKVGETTSDGLFSLDCLRCVGACGLAPVVTIAGKVYGRLT 148 Query: 162 PERLEEIIDAF 172 PE++ +I+ + Sbjct: 149 PEKVRDILSEY 159 >gi|317048936|ref|YP_004116584.1| NADH-quinone oxidoreductase subunit E [Pantoea sp. At-9b] gi|316950553|gb|ADU70028.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. At-9b] Length = 171 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +++A + P+ F SE + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQKIAIQTIDPNEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +H KP DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LHIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIATLLEQY 170 >gi|51892728|ref|YP_075419.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM 14863] gi|51856417|dbj|BAD40575.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM 14863] Length = 274 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRA-QEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYT 83 V ++ RYP R +SA++PLL A +E+EG +++++ IE VA I +A V + +FYT Sbjct: 18 VEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCSFYT 77 Query: 84 QFQLSPVGTRAHVQVCGTTPC-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV-ECQ 141 F+ PVG + + VCG C +L G +L+E + K DG ++ E EC Sbjct: 78 MFRRQPVG-KYLITVCGNMACHLLAGGSQLVEHMEKTLGIKVGETTPDGLITLEVTGECL 136 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 AC AP++ + + +T E+ + ++ A G+G Sbjct: 137 AACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEG 172 >gi|297618251|ref|YP_003703410.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] gi|297146088|gb|ADI02845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] Length = 180 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +I +YP + ++P++ Q++ ++ + A+E+ A + V +ATFY F Sbjct: 26 VQPIIDKYPAEK--RYILPIMQDIQKRFNYLPKEALEIAAAYVGAPVSLVYSMATFYKAF 83 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R H ++C T C ++ + +++ I +P DG S E V C GAC Sbjct: 84 SLVPRG-RVHFRMCDGTACHIKSSQVILDEIHKCIGIRPGETTPDGQFSLETVNCLGACA 142 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+++ + + +TP + EII + Sbjct: 143 LAPVLVANQKVHPKVTPAAMREIIKQYG 170 >gi|238753751|ref|ZP_04615112.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473] gi|238707987|gb|EEQ00344.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473] Length = 187 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE ++F S E + Y +R +A I L Q++ GWV AI +A+ Sbjct: 24 AESATTMAAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAAISKKLSIQPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ DL PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSDLKPEEIEQLLEQY 186 >gi|66046429|ref|YP_236270.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae B728a] gi|63257136|gb|AAY38232.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas syringae pv. syringae B728a] gi|330954560|gb|EGH54820.1| NADH dehydrogenase subunit E [Pseudomonas syringae Cit 7] gi|330972910|gb|EGH72976.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ +N + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKNSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|191166488|ref|ZP_03028318.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A] gi|190903448|gb|EDV63167.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A] Length = 166 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMYHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165 >gi|315292242|gb|EFU51594.1| NADH dehydrogenase subunit E [Escherichia coli MS 153-1] Length = 166 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSLVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165 >gi|118581918|ref|YP_903168.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] gi|118504628|gb|ABL01111.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379] Length = 172 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 P+R + ++ +L +AQ+ G++ R + VA+++ ++ +V +A+FYT F + P G + Sbjct: 37 PTR-EGHLVTVLHKAQQLFGYLPREVQQYVADLMGVSLAKVYGVASFYTFFSMVPKG-KY 94 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C T C ++ K+++ ++ + + DG S + + C GAC AP++ +G+ Sbjct: 95 PISICMGTACYVKQAHKIVDAFKDILGVEIGEVTGDGKFSIDVLRCVGACALAPILTVGE 154 Query: 155 DTYEDLTPERLEEII 169 Y +TP++++EII Sbjct: 155 KVYAHVTPDQVKEII 169 >gi|253576870|ref|ZP_04854195.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251843737|gb|EES71760.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 174 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE V E+I ++ + A+IP+L Q+ G++ A+++V+ L M+ + +A Sbjct: 18 EERLHRVGEIIDQF--RQLPGALIPVLHEIQDLYGYLPEEALQIVSRELGMSMAEIYGVA 75 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F L P G ++VC T C ++G + +++ +++ +DG + + Sbjct: 76 TFYSFFSLEPKGEHI-IRVCMGTACYIKGAQGVLDRLSQELNVPVQGTTADGKFTLDATR 134 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP++ IG+ + LTP + +I+ T Sbjct: 135 CLGACGLAPVMTIGEKVHGRLTPNEIPKILKQMRT 169 >gi|304311498|ref|YP_003811096.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] gi|301797231|emb|CBL45451.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] Length = 167 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + + E + + Y R +A I L Q + GWV AI +A IL + Sbjct: 11 APYEMAAEDRAEIEHSLHHYDDPR--AASIDALKVIQRRHGWVPNNAIREIALILQIPDS 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY + SPVG R + VC + C L G E++ + ++ KP SD Sbjct: 69 DVEGVATFYNRIYRSPVG-RHVITVCDSIGCFLTGFEEVYAALQQRLGIKPGQTTSDNRF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC P++MI DTY +LT ++L+ +++ ++ Sbjct: 128 TLIPTCCLGACDRGPVLMINDDTYFNLTVDQLDALLEKYA 167 >gi|254445571|ref|ZP_05059047.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Verrucomicrobiae bacterium DG1235] gi|198259879|gb|EDY84187.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Verrucomicrobiae bacterium DG1235] Length = 160 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 9/153 (5%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E+ + I +YP QSAV+PLL Q+ +G ++ A E VA L +A I VL + + Sbjct: 6 ETLAEIEAAIPKYPEK--QSAVMPLLHAIQKDQGTLTNEAAEWVAEKLGIAPINVLSVIS 63 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEE 137 FY F+ +G R H++VC T C + G K VC + + N DG ++ E Sbjct: 64 FYPFFRQHQIGKR-HIRVCRTLSCAMAGGAK---VCDRMLKEFETELNGVSPDGEVTVEF 119 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 EC +C +AP++++ ++ +E+L + +EI D Sbjct: 120 AECLASCGSAPVMLVDEELHENLDEAKAKEICD 152 >gi|154249674|ref|YP_001410499.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum Rt17-B1] gi|154153610|gb|ABS60842.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum Rt17-B1] Length = 161 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Query: 39 QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 + ++ LL R Q+ Q ++ E++A L++ +V E+ TFYT F P G + + Sbjct: 21 RDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYTMFSTKPRG-KYII 79 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC + PC + G ++++ + K+ DG + EE C G C +P++M+ Sbjct: 80 RVCTSLPCHVPGGREIVQFLKQKLGVDFGETTKDGLFTLEETGCLGLCGVSPVIMVNDQY 139 Query: 157 YEDLTPERLEEIIDAFSTGQG 177 Y DLT E++ EII+ G+G Sbjct: 140 YGDLTVEKVNEIIENLKGGEG 160 >gi|300246021|gb|ADJ94068.1| putative anaerobic benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 161 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + A+ + +V + Y + A+IP+L +AQE G++ + V+ L + ++ + T Sbjct: 12 KEALELEKVFAEYRGKK--GALIPVLQKAQEIYGYLPAEVLREVSRNLQIPVSKIFGVVT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY QF L P G R V+VC T C +RG K+ E I D ++E V C Sbjct: 70 FYAQFHLHPRG-RNIVRVCLGTACHVRGGAKISEAVTKAIGIIDGETTEDLRYTFESVAC 128 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++M+ +T+ LTP+ ++ +++ + Sbjct: 129 LGACGLAPVMMVNDETHGRLTPDMVKGLLEQY 160 >gi|260892083|ref|YP_003238180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] gi|260864224|gb|ACX51330.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] Length = 149 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I L+ Q G++ A+ +A L + +V +ATFY QF+L P G V VC Sbjct: 20 LIAALLALQRHYGYLPEPALRTLAQELGVPLSKVYGVATFYAQFRLKPRGKHT-VCVCLG 78 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E++ + ++ +P +DG + E V C GAC AP+V++ ++T+ L Sbjct: 79 TACHVRGSEQIFHALKRELGVEPGDTTADGRFTLEVVSCVGACSMAPVVVVDEETHGRLD 138 Query: 162 PERLEEIIDAF 172 PE+ ++ + Sbjct: 139 PEKALALLKKY 149 >gi|21672440|ref|NP_660507.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008858|sp|Q8K9Y4|NUOE_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 168 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 Y SR S I L Q++ GWV AI +ANIL++ V +ATFY+Q PVG Sbjct: 31 YENSR--SVSIEALKIVQKKRGWVCDQAIIEIANILNLNPSEVESVATFYSQIYRQPVG- 87 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R ++ C + C L G EK+ + + + K + DG + V C G C AP +MI Sbjct: 88 RNVIRYCDSVVCYLTGYEKIKKFLEDYLFIKIGNTTVDGRFTLLPVCCLGNCDKAPTIMI 147 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +D Y L P+ + +++ + Sbjct: 148 NEDLYSHLNPDLIPNLLELY 167 >gi|157364372|ref|YP_001471139.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO] gi|157314976|gb|ABV34075.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO] Length = 162 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 42 VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +I +L R Q+ G ++ A E+VA L++ +V E+ TFYT F P G R ++VC Sbjct: 25 LINILHRIQDHFGNYIPPEAAEIVAEELNVPPSKVYEVLTFYTMFSTKPRG-RYVIRVCV 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 PC + G ++++ + ++ K DG + E C G C AP++MI Y DL Sbjct: 84 NLPCHVTGGREIVKTIQEMLNVKFGETTEDGLFTLETTSCLGLCGVAPVIMINDQYYGDL 143 Query: 161 TPERLEEIIDAFSTG 175 T +++ EII++ G Sbjct: 144 TVKKIREIIESLRQG 158 >gi|268323354|emb|CBH36942.1| putative NADH-quinone oxidoreductase chain E [uncultured archaeon] Length = 153 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E+I RY + +I LL+ Q + W+S+ AI ++ + + ++ IA+FY Sbjct: 9 VDEIIERYKGE--EGVLIQLLLDVQSEFNWISKEAITQISERMQIPKSQIYRIASFYEAM 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L PVG R +QVC T C +RG K+++ + K SD S + V C G C Sbjct: 67 SLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCLGCCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P++++ + +TP +E I++ + Sbjct: 126 MGPVIVVDGIYHGKITPAMVEGILETY 152 >gi|294637176|ref|ZP_06715484.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685] gi|291089640|gb|EFE22201.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685] Length = 166 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S F S+ + + I Y R +A I L Q++ GWV AAI+ +A +L + Sbjct: 10 SVFVLSDNARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDAAIDAIAEVLGIPAA 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R V+ C + C + G + + ++ +P DG Sbjct: 68 DVEGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLNIQPGETTCDGRF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +D ++ LTPER E+++ + Sbjct: 127 TLLPTCCLGNCDKGPNMMIDEDLHDHLTPERAIELLERY 165 >gi|328953056|ref|YP_004370390.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453380|gb|AEB09209.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 151 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 7/149 (4%) Query: 26 VNEVISRYPPSRCQSA-VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +N ++SRY CQ A +IP+L Q+ ++ + ++VVA L++ R+ +ATFY Sbjct: 6 LNGILSRYD---CQPADLIPVLQDIQDSYNYLPQDEMKVVAERLNIPLTRIFSVATFYKM 62 Query: 85 FQLSPVGTRAHV-QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F L+P G H+ +VC T C L+G ++L E +++ + D + E V C G+ Sbjct: 63 FSLTPKG--KHICRVCLGTTCHLKGGQRLAESISHRLGVDIGYTTKDMRFTLETVGCLGS 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP++MI + +T +++ +I+ + Sbjct: 121 CAQAPVMMIDDTYHARVTVDKVPKILKKY 149 >gi|330810466|ref|YP_004354928.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378574|gb|AEA69924.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 164 >gi|218961953|ref|YP_001741728.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] gi|167730610|emb|CAO81522.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] Length = 158 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++++++ + ++IPLL Q++ G++SR ++ +A+ +++ + +ATFY+ F Sbjct: 8 LDKILAKFQDKK--GSLIPLLQEVQKERGYLSRETMQYLADKMEIPSAEIFGVATFYSMF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGA 143 +L P G + ++VC T C + + I+ +I Q P N SD + EV C G Sbjct: 66 RLKPQG-KHLIRVCKGTACHVSDVDS-IKNAIIEILQLPEGENTTSDMQFTVMEVACLGC 123 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C AP++MI TY L PE + I++ + G + Sbjct: 124 CSLAPVIMIDGKTYGKLVPEAIPAILNQYKNGDSE 158 >gi|225175929|ref|ZP_03729921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168517|gb|EEG77319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 166 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQ+ G++ + + +A LD++ ++ + TFY+QF L P G R ++VC Sbjct: 36 LITVLQQAQDIYGFLPESVLLRIAEALDLSMAKIYGVVTFYSQFHLKPRG-RNVIRVCQG 94 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG ++++ + ++ + D + E V C GAC AP++MI DT+ LT Sbjct: 95 TACHVRGVGRIMDKIKEELGIAEGETSEDLRFTLESVACIGACGLAPVIMINNDTHGRLT 154 Query: 162 PERLEEIIDAF 172 +R++ I+ + Sbjct: 155 ADRVKLILPLY 165 >gi|82702145|ref|YP_411711.1| NADH-quinone oxidoreductase, E subunit [Nitrosospira multiformis ATCC 25196] gi|82410210|gb|ABB74319.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] Length = 168 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 YP +R + I L Q+ GWVS I VA L M + +ATFY PVG Sbjct: 16 HYPNNR--AVCIEALKIVQQHRGWVSNEGIADVAEALQMKPAELESVATFYNMIFRKPVG 73 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +C + C + G E+L + +++ +P +DG + C GAC +AP++M Sbjct: 74 KHV-ILLCDSVSCWIMGYERLRQHLGDRLGIRPGQTTADGRFTLLPNVCLGACDHAPVMM 132 Query: 152 IGKDTYEDLTPERLEEIIDAF 172 + Y+DL P R+++I+ ++ Sbjct: 133 VDDAHYQDLDPARIDQILASY 153 >gi|306814604|ref|ZP_07448766.1| NADH dehydrogenase subunit E [Escherichia coli NC101] gi|305851998|gb|EFM52450.1| NADH dehydrogenase subunit E [Escherichia coli NC101] Length = 166 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHA 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 HLTPEAIPELLERY 165 >gi|150007690|ref|YP_001302433.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013605|ref|ZP_05285731.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|256839951|ref|ZP_05545460.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] gi|262381801|ref|ZP_06074939.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|298375636|ref|ZP_06985593.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19] gi|301310273|ref|ZP_07216212.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3] gi|149936114|gb|ABR42811.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|256738881|gb|EEU52206.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] gi|262296978|gb|EEY84908.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|298268136|gb|EFI09792.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19] gi|300831847|gb|EFK62478.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3] Length = 162 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ +V+A L++ RV + TFY+ F ++P G + + VC Sbjct: 28 LINILHAAQGLFGYLPPEVQQVIAAELNIPVSRVYGVVTFYSFFTMTPKG-KYPISVCLG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E ++E + ++ K DG S + + C GAC AP+VMIG Y +T Sbjct: 87 TACYVRGAENVLEEMQRQLEIKVGETTPDGLFSLDCLRCVGACGLAPVVMIGGKVYGRVT 146 Query: 162 PERLEEIIDAF 172 PE++ +I+ + Sbjct: 147 PEKVRDILSDY 157 >gi|126666307|ref|ZP_01737286.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17] gi|126629108|gb|EAZ99726.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17] Length = 174 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+A I L Q++ GWV AI +A L + V +ATFY+ PVG R + + Sbjct: 41 QAACIEALKIVQKRHGWVPDGAIVAIAETLGVGAGAVEGVATFYSLIFRQPVG-RHVILL 99 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C ++ C L G E L EV ++ DG + V C GAC P +MIG DT+ Sbjct: 100 CDSSSCFLTGYEALSEVLSERLGIGFGQTTGDGRFTLLPVCCLGACDRGPAMMIGDDTFG 159 Query: 159 DLTPERLEEIIDAF 172 + + L+E+++A+ Sbjct: 160 PIEADDLDELLEAY 173 >gi|323704273|ref|ZP_08115852.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323536339|gb|EGB26111.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 160 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS+E+ + +VI + + ++I ++ AQE G++ + ++ +++ + Sbjct: 8 FSQENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 IATFY++F L P G + + VC T C ++G +++ + K+ DG S E Sbjct: 66 IATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEA 124 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +E+I+ F Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159 >gi|237800541|ref|ZP_04589002.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023401|gb|EGI03458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str. 1_6] Length = 165 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ + + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + E+++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAEMLEGY 164 >gi|254166690|ref|ZP_04873544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|289596481|ref|YP_003483177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum boonei T469] gi|197624300|gb|EDY36861.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|289534268|gb|ADD08615.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum boonei T469] Length = 149 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY+ F Sbjct: 5 VLQIINKHKNK--DSKLLAILHDVQDEFGYIPEEAIKTIAKELGMKKGEVYDAASFYSFF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G + V +C C ++G E++IE + K DG +++ VE G C Sbjct: 63 RFKPEG-KHEVMICDCIVCHIKGSERIIERIEKEFGVKMGETTKDGKFTFKIVEGLGHCE 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 ++P++MI Y DLTP+++ EI+ Sbjct: 122 HSPVMMIDGKIYGDLTPDKVVEIL 145 >gi|169830326|ref|YP_001716308.1| hypothetical protein Daud_0108 [Candidatus Desulforudis audaxviator MP104C] gi|169637170|gb|ACA58676.1| Protein of unknown function DUF166 [Candidatus Desulforudis audaxviator MP104C] Length = 377 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + E+ + S Y R S ++P+L AQE G++ A+ +A L + V Sbjct: 225 ALKEDIEAGLKSAFSFYKGHR--SELVPILQDAQEVFGYLPETAMLEIARFLRLPESHVY 282 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFY QF G R ++VC T C ++G ++++E ++ D S E Sbjct: 283 GVATFYDQFHFIRRG-RNQIKVCCGTACHVKGADRVLEEFERQLGVGHGETTPDYEYSLE 341 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 V C GAC AP+V++GK+ Y +TP R ++ Sbjct: 342 RVACVGACALAPVVVMGKEVYGQMTPGRARSVL 374 >gi|150020390|ref|YP_001305744.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149792911|gb|ABR30359.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 157 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ ++ + +I +L+ Q++ + + + ++ LD+ ++ +ATFY QF Sbjct: 8 VEEILEKHNYEK--KNLIKILLDVQKEYRHIPKEVVNYISVALDIPPAKIFGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + +C T C + G L++ ++ KP D S ++V C GAC Sbjct: 66 SLKPKGEYT-ILICDGTACHMEGSMGLVKAIEEELGIKPGEVTQDLKFSLDKVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 AP ++I + Y LTPE+ +EI+ G Sbjct: 125 LAPAMVINGEVYGKLTPEKTKEILRKLKEG 154 >gi|300853891|ref|YP_003778875.1| NADH dehydrogenase I subunit E [Clostridium ljungdahlii DSM 13528] gi|300434006|gb|ADK13773.1| NADH dehydrogenase I, E subunit [Clostridium ljungdahlii DSM 13528] Length = 161 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 +VI +YP Q + +L Q + ++ R A+E +A LD R+ +ATFY L Sbjct: 14 DVIEKYPKE--QRFTLAILQDIQRKYKYIPREALENLAKYLDTPVSRLYGMATFYKALSL 71 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 +P G + VC T C + G +++ I KP D S V C G C A Sbjct: 72 TPKGENI-ITVCDGTACHVAGSMVVMDELEKAIGIKPGETTEDLKFSINTVNCIGCCAIA 130 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++MI Y +LTP+ +EEI+ + Sbjct: 131 PVMMINDKYYGNLTPKLVEEILSEY 155 >gi|50121948|ref|YP_051115.1| NADH dehydrogenase subunit E [Pectobacterium atrosepticum SCRI1043] gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase chain E [Pectobacterium atrosepticum SCRI1043] Length = 181 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 12 QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 QP++ S ++E+A +++ ++ ++A I L Q+ GWV AI +A Sbjct: 15 QPAADSLTKENAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKARGWVPDGAINAIA 74 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 75 DLLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERKLSIKPG 133 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ +TPE +E +++ + Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQY 180 >gi|91200212|emb|CAJ73256.1| strongly similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit (NuoE) [Candidatus Kuenenia stuttgartiensis] Length = 156 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ G++ A+E V+ D+ R+ + TFY+QF L P G V++C Sbjct: 27 LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSLVPRGKHT-VRLCAG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G + E + + K D + + V C G C AP++MI Y LT Sbjct: 86 TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 145 Query: 162 PERLEEIIDAF 172 E+ EEI+ ++ Sbjct: 146 EEKTEEILKSY 156 >gi|289523837|ref|ZP_06440691.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502927|gb|EFD24091.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 163 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S S + +++ RY + ++ LL+ QE+ +V A+ +A D+ RV Sbjct: 2 LSATSKEAIEDLLYRYEKN--PRFLLQLLLDVQERFRYVPTEAMRSIARYFDIPESRVFA 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY L P G + ++VC T C LRG ++++ K+ DG + E Sbjct: 60 VATFYKVLSLVPKGEKT-IKVCQGTACHLRGGKQVLSAIGEKLGIAAGETTEDGIFTLET 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C AP++M+G Y LT + + I++A Sbjct: 119 VNCLGCCAMAPVMMVGDKVYGKLTVDDVSRILEA 152 >gi|78221379|ref|YP_383126.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] gi|78192634|gb|ABB30401.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] Length = 173 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R V V Sbjct: 21 REAAVDVIKELQRHYGWLTDEAVAEAAGLLGLTPLQVEELATFYEMIYRRPVGKRV-VHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E L+ K+ +P +DG + C G C AP +MIG Y Sbjct: 80 CDSISCWAMGGESLMAHLAAKLGVEPGGTTADGMFTLLPCCCLGNCGEAPTLMIGDTLYG 139 Query: 159 DLTPERLEEII 169 +TPER EEI+ Sbjct: 140 RVTPERGEEIL 150 >gi|94676865|ref|YP_588822.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220015|gb|ABF14174.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 167 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F + E + + ++Y +R S I L Q+Q GWV +AI+ +AN L ++ Sbjct: 11 TNFKLNPELYQAIQQEKNKYEDARAVS--IEALKMVQKQYGWVPDSAIQAIANTLGISGS 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY+ PVG R ++ C + C + G + + N ++ KP DG Sbjct: 69 DVEEVATFYSNIFRQPVG-RHVIRYCNSVVCYITGYQTIQTKLENCLNIKPGKTTPDGRF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DTY LT E + ++++ + Sbjct: 128 TLLPTCCLGNCDKGPTMMINDDTYVHLTAENICQLLELY 166 >gi|237732316|ref|ZP_04562797.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2] gi|226907855|gb|EEH93773.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2] Length = 166 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHA 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 HLTPEGIPELLERY 165 >gi|293395173|ref|ZP_06639459.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582] gi|291422350|gb|EFE95593.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582] Length = 183 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S E + Y R +A I L Q++ GWV AI +A++L + Sbjct: 28 AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASD 85 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG + Sbjct: 86 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTGDGRFT 144 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ L PE +E +++ + Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIENLLEQY 182 >gi|157144784|ref|YP_001452103.1| NADH dehydrogenase subunit E [Citrobacter koseri ATCC BAA-895] gi|157081989|gb|ABV11667.1| hypothetical protein CKO_00511 [Citrobacter koseri ATCC BAA-895] Length = 166 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 HLTPEAIPELLERY 165 >gi|93005406|ref|YP_579843.1| NADH dehydrogenase subunit E [Psychrobacter cryohalolentis K5] gi|92393084|gb|ABE74359.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter cryohalolentis K5] Length = 169 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E ++E + YP R +A + L Q++ GWV A + +ANIL++ + Sbjct: 17 LTAEEIAAIHEFMHHYPHPR--AASLDSLKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L ++++ +DG + Sbjct: 75 VATFFNRIYRQPVG-RHVILVCDSVACYLTGYEALAAELKSQLGINYGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P V+I +DTY + PE + ++++ ++ Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQPEEVAQLLELYA 169 >gi|150021054|ref|YP_001306408.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149793575|gb|ABR31023.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 160 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 26 VNEVISRYPPSRCQSA--VIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + ++IS R + +I L + Q+ + ++S A ++V+ L++ +V E+ TF Sbjct: 5 IKDIISEAKNERLEEKDILIYTLHKIQDISENNFISEEAAKIVSEELNIPLSKVYEVLTF 64 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ F G + ++VC + PC + ++I++ + ++ +DG + EE C Sbjct: 65 YSMFSTKKRG-KYLIRVCSSLPCHVANGREIIKILKEELKIDFNQTTADGMFTLEETGCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 G C +P++MI Y DLTPE+++E+I+ G+ Sbjct: 124 GLCGVSPVIMINNKYYGDLTPEKVKELINKIKRGE 158 >gi|229591256|ref|YP_002873375.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens SBW25] gi|312961689|ref|ZP_07776187.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6] gi|229363122|emb|CAY50141.1| NADH dehydrogenase I chain E [Pseudomonas fluorescens SBW25] gi|311283948|gb|EFQ62531.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6] Length = 165 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNKLGIGLGQTTPD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTQLLEGY 164 >gi|283832285|ref|ZP_06352026.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC 29220] gi|291071929|gb|EFE10038.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC 29220] Length = 166 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI DT+ Sbjct: 92 CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDDDTHA 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 HLTPEGIPELLERY 165 >gi|311278758|ref|YP_003940989.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1] gi|308747953|gb|ADO47705.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1] Length = 166 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQSAIEQKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + ++++ + Sbjct: 152 HLTPEAIPDLLEQY 165 >gi|237809383|ref|YP_002893823.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187] gi|237501644|gb|ACQ94237.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187] Length = 166 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 ++Q F+ S + + Y R +A I L Q++ GWV AI +A++L Sbjct: 6 QYQNEPFALSASELAAIQHEMHHYEDPR--AATIEALKLVQKERGWVPDGAIYAIADVLG 63 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + V +ATFY+Q PVG R ++ C + C + G + + + K+ +P + Sbjct: 64 IPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCFINGYQTIQQALEEKLGIRPGQTTA 122 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D + V C G C P +MI DT+ L+ + L+E+++ + Sbjct: 123 DNRFTLLPVCCLGNCDKGPSMMIDDDTHSHLSVDNLDELLEQY 165 >gi|332799829|ref|YP_004461328.1| NADH-quinone oxidoreductase subunit E [Tepidanaerobacter sp. Re1] gi|332697564|gb|AEE92021.1| NADH-quinone oxidoreductase, E subunit [Tepidanaerobacter sp. Re1] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E++ +Y + ++ L AQ G++ E+VA LD+ V TFY+ F Sbjct: 18 IEEMLKKYKGQK--GTLLQALQEAQNIMGYLPIEVQEMVAETLDITLSEVYSTITFYSFF 75 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + ++ C T C +RG EK+++ + ++ + DG S C GAC Sbjct: 76 SLKPKG-KYQIRTCLGTACYVRGAEKVLDRLKTELGIEVGDTTDDGKFSLNACRCIGACG 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP ++I + Y LTP+++ +I+ F Sbjct: 135 LAPAIIINDEVYGRLTPDKIPDILKKF 161 >gi|251773163|gb|EES53716.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum ferrodiazotrophum] Length = 176 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 4/144 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+ +L Q++ G+V +E V L + + ++ + TFY+QF P G + ++V Sbjct: 28 EGAVVQILQTIQDKYGYVPAEVLERVGEDLGIPHSKMFGVLTFYSQFYREPRG-KFILKV 86 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG L++ + +H + D + E V C G+C APM M+ +TY Sbjct: 87 CVGTACHVRGAGLLVDKIKENLHIEEGENTEDMMFTLEPVSCLGSCALAPMAMVNGNTYG 146 Query: 159 DLTPERLEEIIDAF---STGQGDT 179 L+ +++ +++ F S G+ +T Sbjct: 147 KLSGDKMVDLLKQFREESAGEPET 170 >gi|257463176|ref|ZP_05627576.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium sp. D12] gi|317060767|ref|ZP_07925252.1| NADH dehydrogenase [Fusobacterium sp. D12] gi|313686443|gb|EFS23278.1| NADH dehydrogenase [Fusobacterium sp. D12] Length = 160 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP+L +AQE G++ + +A +++ R+ I TFY F +P G + + V Sbjct: 23 EMAIIPILHKAQEIFGYLPEEVQQFIAEKMEIPIGRIYGIVTFYNFFSTNPKG-KHQISV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K+++ + ++ DG S + + C GAC AP++MI D + Sbjct: 82 CTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGACGLAPVMMIDSDVHG 141 Query: 159 DLTPERLEEIIDAF 172 L E++ EI+ + Sbjct: 142 KLEKEQVAEILSFY 155 >gi|152971213|ref|YP_001336322.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579544|ref|YP_002237327.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342] gi|238895802|ref|YP_002920538.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae NTUH-K2044] gi|262043325|ref|ZP_06016454.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934257|ref|YP_003438316.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22] gi|290508460|ref|ZP_06547831.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55] gi|330003559|ref|ZP_08304674.1| NDH-1 subunit E [Klebsiella sp. MS 92-3] gi|150956062|gb|ABR78092.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568602|gb|ACI10378.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342] gi|238548120|dbj|BAH64471.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039349|gb|EEW40491.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888986|gb|ADC57304.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22] gi|289777854|gb|EFD85851.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55] gi|328536899|gb|EGF63198.1| NDH-1 subunit E [Klebsiella sp. MS 92-3] Length = 166 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + ++++ + Sbjct: 152 HLTPEAIPDLLEQY 165 >gi|292492185|ref|YP_003527624.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] gi|291580780|gb|ADE15237.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] Length = 155 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+E + +YP Q+A + L Q + GWVS + VA IL M+ + Sbjct: 3 LSDEERKEIETEFKQYPQK--QAASVEALKIVQRRHGWVSDPHLREVAQILGMSAEELDG 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG A + +C + C + G ++L + +N++ + DG + Sbjct: 61 VATFYNLIFRRPVGRHA-ILLCNSVSCWIMGYDRLYQHLQNRLGIGLGETSKDGRFTLLP 119 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C +AP++M+ +D + DL PE+++EI+ + Sbjct: 120 TCCLGDCNHAPVMMVDEDLHRDLAPEKVDEILGRY 154 >gi|255994341|ref|ZP_05427476.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989] gi|255993054|gb|EEU03143.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989] Length = 163 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 80/149 (53%), Gaps = 7/149 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++S Y + ++I +L + Q+ G++ I+ ++ + ++ +ATFY+QF Sbjct: 12 IDNILSEYADK--EGSLITILQKTQDAYGYLPMDVIDYISEKTGIRAAKIYGVATFYSQF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L P+G + + +C T C + G + + EV ++ K DG + V C G C Sbjct: 70 RLKPIG-KYLIMLCQGTACHVNGSDSVREVVSEHLNIKDGETTEDGVFTLNNVACLGCCS 128 Query: 146 NAPMVMI----GKDTYEDLTPERLEEIID 170 AP++M+ G++TY LT +++ +++D Sbjct: 129 IAPVMMVQTVEGEETYGQLTKDKVIKLLD 157 >gi|271501265|ref|YP_003334290.1| NADH-quinone oxidoreductase subunit E [Dickeya dadantii Ech586] gi|270344820|gb|ACZ77585.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech586] Length = 176 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S+ + Y +R +A I L Q+Q GWV AI +A++L + V Sbjct: 22 FVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAINAIADVLGIPASDV 79 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K++ KP DG + Sbjct: 80 EGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTL 138 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ L P+ L+ +++ + Sbjct: 139 LPTCCLGNCDKGPTMMIDEDTHSQLKPDDLDSLLEQY 175 >gi|297587237|ref|ZP_06945882.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516] gi|297575218|gb|EFH93937.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516] Length = 161 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L RAQ++ G++ + I +++ ILD+ + + TFY QF L P G + +QVC Sbjct: 31 LMPVLQRAQDEFGYLPKEIITMISKILDIPLSEIYGVITFYAQFSLIPKG-KYDIQVCEG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +++ E + + D S C G C AP+++I D Y + Sbjct: 90 TACYVKGAQRVSEKLQEILKIPAGSTTEDQKFSITPCRCVGLCALAPVIVINGDVYGKVA 149 Query: 162 PERLEEIIDAFS 173 LE II ++ Sbjct: 150 VNELESIISKYN 161 >gi|223558017|gb|ACM91023.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 161 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E++ + + ++ + Y + +I +L + Q G++ +VVA+ L + RV + Sbjct: 9 TEDNYLKIKDICASY--NNNPGELINVLHKTQGTFGYLPEEVQQVVADCLGIPVGRVYGV 66 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY+ F + P G A + VC T C ++G EK+++ ++++ DG S + + Sbjct: 67 VSFYSFFTMKPKGKYA-ISVCLGTACYVKGAEKILDALKSELKISEGGVTEDGKFSLDVL 125 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++ I TY L PE ++EI+ ++ Sbjct: 126 RCVGACGLAPVMTINGKTYGRLVPEHVKEILAEYA 160 >gi|146312471|ref|YP_001177545.1| NADH dehydrogenase subunit E [Enterobacter sp. 638] gi|145319347|gb|ABP61494.1| NADH dehydrogenase subunit E [Enterobacter sp. 638] Length = 166 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 8 QTEAFELSAAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLDIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 125 RFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIPDLLEQY 165 >gi|319789710|ref|YP_004151343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio ammonificans HB-1] gi|317114212|gb|ADU96702.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio ammonificans HB-1] Length = 160 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 26 VNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V E++S RYP + S +P L A++ + + ++A+ L++ + V E A FY Sbjct: 10 VKELVSSGRYPSKK--SCTLPALWIAEKNFPRIDHEIMRIIASELEIPLVEVEEAAEFYA 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + ++VC CML G E+++E + P DG + EE EC G Sbjct: 68 MFHTKPKG-KYVIRVCTNLSCMLNGAEEIVEELSRLLGISPGETTPDGLFTLEEYECMGL 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP + + ++ + ++T E+L I++ F Sbjct: 127 CDGAPALTVNEERFLNVTKEQLPAILEKF 155 >gi|284042619|ref|YP_003392959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei DSM 14684] gi|283946840|gb|ADB49584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei DSM 14684] Length = 212 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 12/185 (6%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P++ E + +++YP R SA IP L AQ+ GW S AIE VA ++ + Sbjct: 35 DPATTPVPAELRTQIEAAMAKYPNFR--SAAIPALHAAQDLHGWCSPEAIEQVACVMRLT 92 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFY F++ PVG R V VC C LRG + ++ ++ D Sbjct: 93 PGYLTAVATFYDMFEMKPVG-RHRVYVCTNISCSLRGADSVLAAVQDAA-------GDDA 144 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 + EC GAC APM + + L E+++ G+ + P Q+ R + Sbjct: 145 DFNVRPFECLGACDIAPMASVNGEFVGPLDLADAEQLVADLREGR--EVLPAKQLSRRAC 202 Query: 192 APAGG 196 A G Sbjct: 203 ADPGA 207 >gi|227326164|ref|ZP_03830188.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 181 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 12 QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 QP++ S ++++A +++ ++ ++A I L Q++ GWV AI +A Sbjct: 15 QPAADSLTKDNAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKERGWVPDGAIHAIA 74 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 75 DLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI +DT+ +TPE +E +++ + Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQY 180 >gi|288572801|ref|ZP_06391158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568542|gb|EFC90099.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 163 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 18 FSEESAIWVNEVISRYPP--SRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 S + + NE+ R P R Q IPLL Q++ G+V+ A+ V+ +D++ Sbjct: 1 MSSTTTVSSNELTQRLDPIVQRYQGKKGITIPLLADIQKEYGYVAEEAVTYVSRKMDISA 60 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + +ATFY F+L P G +++C T C ++G + E + + DG Sbjct: 61 SEMFGVATFYAMFRLQPEGKYV-IRICRGTACHVQGSASVAEEVARHLGIEEGETTEDGI 119 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + + V C G C AP++M+G + + LTP + EI++ + Sbjct: 120 FTLQHVACLGCCSLAPVMMVGDNVHGLLTPPKSIEILEDY 159 >gi|329296022|ref|ZP_08253358.1| NADH-quinone oxidoreductase subunit E [Plautia stali symbiont] Length = 171 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +++A + P+ F SE + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQKIAIQTIDPTEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q +PVG ++ C + C + G + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRTPVGCHV-IRYCDSVVCHITGYQGIQAALEQN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIANLLEQY 170 >gi|293371346|ref|ZP_06617783.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CMC 3f] gi|298481912|ref|ZP_07000101.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22] gi|315919437|ref|ZP_07915677.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|292633706|gb|EFF52261.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CMC 3f] gi|298271776|gb|EFI13348.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22] gi|313693312|gb|EFS30147.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 158 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ +G++ ++A+ L + +V + TFYT F ++P G + + VC Sbjct: 28 LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 147 PVDVKKIIE 155 >gi|237715805|ref|ZP_04546286.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407420|ref|ZP_06083968.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|294646921|ref|ZP_06724542.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CC 2a] gi|294810788|ref|ZP_06769434.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides xylanisolvens SD CC 1b] gi|229443452|gb|EEO49243.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354228|gb|EEZ03320.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|292637866|gb|EFF56263.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CC 2a] gi|294441976|gb|EFG10797.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides xylanisolvens SD CC 1b] Length = 158 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ +G++ ++A+ L + +V + TFYT F ++P G + + VC Sbjct: 28 LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 147 PVDVKKIIE 155 >gi|225175129|ref|ZP_03729125.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225169305|gb|EEG78103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 171 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE V+E+++ +R +IP+L QE+ G++ R A+E VA+ + MA + V +A Sbjct: 9 EEILNSVDEILTSSEINR--RNLIPILQSIQERLGYLPRPALEKVADAMGMAAVDVYGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF+ P G ++VC T C + G + ++ +++ D E V Sbjct: 67 TFYNQFRFHPPGEH-QIKVCMGTACYIVGGQIAMDSFARRLNISEGETTPDRKYGLERVA 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C G C AP+V++ + +TP R++ I+ + G+ +PG Sbjct: 126 CVGCCTMAPVVVVDEQMEGSVTPTRVDGILLSLEA-NGNGEKPG 168 >gi|160887579|ref|ZP_02068582.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483] gi|260171117|ref|ZP_05757529.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|156107990|gb|EDO09735.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483] gi|295087524|emb|CBK69047.1| NADH dehydrogenase subunit E [Bacteroides xylanisolvens XB1A] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ +G++ ++A+ L + +V + TFYT F ++P G + + VC Sbjct: 32 LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 90 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 91 TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 150 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 151 PVDVKKIIE 159 >gi|281358698|ref|ZP_06245175.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281314824|gb|EFA98860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 170 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 VN+++ +Y S +S +IP+L Q ++S+ I VA + + RV +ATFY F Sbjct: 18 VNKILEKYDYS--ESKLIPILQEVQAVYKYLSKDMISYVATSIGVPPSRVYGVATFYAHF 75 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144 + P G + +++C T C ++ ++ K+ R SD L + E V C GAC Sbjct: 76 SMQPKG-KYIIKLCDGTACHVKKSHGILNALYEKLKLSGDKRTSDDQLFTIETVSCLGAC 134 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170 AP++++ ++ Y TPE+ EI+D Sbjct: 135 GLAPVMVVNEEVYGQCTPEKAIEIVD 160 >gi|302389264|ref|YP_003825085.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Thermosediminibacter oceani DSM 16646] gi|302199892|gb|ADL07462.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E++ +Y + ++ +L AQ G++ VA LD+ V TFY+ F Sbjct: 18 VDEMLKKYKGQK--GVLLQVLQEAQRIVGYLPLEVQIRVAEALDVTLSEVYSTITFYSFF 75 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + ++VC T C ++G +K++ ++ K D S E C GAC Sbjct: 76 NLKPRG-KYQIRVCLGTACYVKGADKVLNRIEQELKIKVGETTEDLKFSLEACRCVGACG 134 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+VMI D Y LTP+R+ EI+ + Sbjct: 135 LAPVVMINDDVYGRLTPDRVPEILKNY 161 >gi|149374624|ref|ZP_01892398.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola DG893] gi|149361327|gb|EDM49777.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola DG893] Length = 171 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+A I L Q + GWV AI +A +L + V +ATFY+ PVG R V V Sbjct: 38 QAACIEALKVVQRRHGWVPDGAIGAIAKVLGIGPASVEGVATFYSLIFRQPVG-RHVVLV 96 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C ++ C L G ++L + + + DG + V C GAC AP +MI DTY Sbjct: 97 CDSSSCFLSGFDELKQALASHLGIDYGQTTEDGRFTLLPVCCLGACDGAPALMIDNDTYG 156 Query: 159 DLTPERLEEIIDAF 172 ++P+ L +++ + Sbjct: 157 PVSPDDLPGLLEGY 170 >gi|251789017|ref|YP_003003738.1| NADH-quinone oxidoreductase subunit E [Dickeya zeae Ech1591] gi|247537638|gb|ACT06259.1| NADH-quinone oxidoreductase, E subunit [Dickeya zeae Ech1591] Length = 176 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI+ +A IL + V +ATFY+Q PVG R ++ Sbjct: 43 RAASIEALKIVQKQRGWVPDGAIDAIAEILGIPASDVEGVATFYSQIYRQPVG-RHVIRY 101 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +M+ +DT+ Sbjct: 102 CDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMVDEDTHS 161 Query: 159 DLTPERLEEIIDAF 172 L P+ L+ +++ + Sbjct: 162 QLKPDDLDSLLEQY 175 >gi|304398213|ref|ZP_07380087.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB] gi|304354079|gb|EFM18452.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB] Length = 171 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AINAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPSLLEQY 170 >gi|237722432|ref|ZP_04552913.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] gi|229448242|gb|EEO54033.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] Length = 158 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A+ L++ +V + TFYT F ++P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRIIASKLNIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 147 PIDVKKIIE 155 >gi|89073314|ref|ZP_01159844.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp. SKA34] gi|89051024|gb|EAR56488.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp. SKA34] Length = 188 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ + E I+ YP R + I L Q++ G++++ ++ +V+ + D++ ++ E Sbjct: 2 LTDQERAHLEEHIAHYPEKR--AGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT + PVG R ++VC + C RG +K++E N + +DG+++ Sbjct: 60 LITFYTLLRRRPVG-RNIMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118 Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173 C G C AP +I D E +LTPER+ I+ + Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELA 155 >gi|253583177|ref|ZP_04860375.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833749|gb|EES62312.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 170 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +SA+I +L +AQE G++ E +A L++ +V + +FY F + P G + + V Sbjct: 29 KSALIIVLHKAQEIFGYIPAEVQEFIAEELEIPVAKVYGVVSFYNFFSMEPKG-KYQISV 87 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG K++E +++ DG S + + C GAC AP+V++GK+ + Sbjct: 88 CTGTACYVRGAGKVLENLEKELNIGVGGVTKDGLFSLDCLRCVGACGLAPVVIVGKEVHG 147 Query: 159 DLTPERLEEIIDAF 172 + P ++++I+ + Sbjct: 148 KVKPTDIKKLIETY 161 >gi|158319964|ref|YP_001512471.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158140163|gb|ABW18475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 166 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP L + Q G++ A+ +V+ LD+ ++ +A+FY+ F L P G + V Sbjct: 32 EGALIPALHKIQSIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQHV-ISV 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + ++E ++++ + + DG + + C GAC AP++MI + Y Sbjct: 91 CLGTACYVKGSQNILERLSSELNIQEGNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYG 150 Query: 159 DLTPERLEEIIDAFS 173 LTP + +I+ ++ Sbjct: 151 RLTPSDVPKILSEYT 165 >gi|330958156|gb|EGH58416.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDMLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|71733608|ref|YP_275282.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485442|ref|ZP_05639483.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625429|ref|ZP_06458383.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649288|ref|ZP_06480631.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. 2250] gi|289679199|ref|ZP_06500089.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae FF5] gi|298487551|ref|ZP_07005593.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185026|ref|ZP_07261699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae 642] gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157935|gb|EFH99013.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323791|gb|EFW79875.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. B076] gi|320327930|gb|EFW83935.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. race 4] gi|330866835|gb|EGH01544.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330881186|gb|EGH15335.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. race 4] gi|330889657|gb|EGH22318.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. mori str. 301020] gi|330900628|gb|EGH32047.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. japonica str. M301072PT] gi|330987945|gb|EGH86048.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010724|gb|EGH90780.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|153807871|ref|ZP_01960539.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185] gi|149129480|gb|EDM20694.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185] Length = 158 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ +G++ ++A+ L + +V + TFYT F ++P G + + VC Sbjct: 28 LINILHEAQHLQGYLPEEIQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 147 PVDVKKIIE 155 >gi|118579071|ref|YP_900321.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118580050|ref|YP_901300.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118581590|ref|YP_902840.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118501781|gb|ABK98263.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM 2379] gi|118502760|gb|ABK99242.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM 2379] gi|118504300|gb|ABL00783.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379] Length = 154 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 + YP S V+P L +++ + + +AN L + ++V E T+YT F PV Sbjct: 13 ATYPKELNSSLVMPFLRIMLDEKKSLGESDAVFIANYLGLPAMQVKEALTWYTMFYRHPV 72 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT ++VC C L G E++I+ K+ KP +DG + VEC +C AP++ Sbjct: 73 GTHV-IKVCRNIACSLMGAERIIDHLSQKLGIKPGETTADGRFTLLLVECLASCGTAPVM 131 Query: 151 MIGKDTYEDLTPERLEEIIDAFS 173 I +E LT ++++I+ S Sbjct: 132 QIDDTYHEQLTEAKIDQILKGLS 154 >gi|310768162|gb|ADP13112.1| NADH dehydrogenase subunit E [Erwinia sp. Ejp617] Length = 171 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLGIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170 >gi|258513532|ref|YP_003189754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777237|gb|ACV61131.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 165 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ SA +++V PS +S +I +L R QE G++ R VA L++ V Sbjct: 9 SQLSAELLSQVDKIIEPSSGRSGNLIQVLHRVQELVGYLPREVQVRVAEGLNVPLSIVYG 68 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY+ F + P G + VC T C +RG ++LI ++++ K SDG S Sbjct: 69 VVSFYSFFNVLPKGKHT-INVCTGTACYVRGAKQLINNIQDQLDIKTGGTTSDGQFSLGM 127 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC P+V I +D + + PE+++ I+ +S Sbjct: 128 VRCVGACGLGPVVTINEDVHAQVRPEKIDGILAKYS 163 >gi|225572037|ref|ZP_03780901.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM 10507] gi|225040472|gb|EEG50718.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM 10507] Length = 164 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +FS +EE + +VI + A++P+L +AQ+ G++ + ++++++ + + Sbjct: 9 AFSGTEEQEEALRKVIEEMKEEK--GALMPILQKAQDIYGYLPKEVMKIISDETQIPMEK 66 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFY+QF L+P G + + VC T C ++G + K+ DG S Sbjct: 67 IYGVATFYSQFTLNPKG-KYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFS 125 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++MI + Y LT + +++I+ + Sbjct: 126 LDACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163 >gi|90579192|ref|ZP_01235002.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14] gi|90440025|gb|EAS65206.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14] Length = 188 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ + E I+ YP R + I L Q++ G++++ ++ +V+ + D++ ++ E Sbjct: 2 LTDQERAHLEEHIAHYPEKR--AGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT + PVG R ++VC + C RG +K++E N + +DG+++ Sbjct: 60 LITFYTLLRRRPVG-RNVMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118 Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173 C G C AP +I D E +LTPER+ I+ + Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELA 155 >gi|310827346|ref|YP_003959703.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612] gi|308739080|gb|ADO36740.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612] Length = 162 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++++S YP R S + ++ Q ++ ++ +A LD + +ATFY Sbjct: 9 IDKILSAYPRDRRHS--LAMMQDMQHHFNYIPEQGMKALAEYLDCPLSSLYSMATFYRAL 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G +++C T C +RG LI + ++ P + DG S E V C G+C Sbjct: 67 SLKPKGKHI-IKLCDGTACHIRGSVNLITGIKRELDISPGETSGDGLFSLETVNCLGSCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+++I Y +T E+L EI++ + Sbjct: 126 LAPVMVIDGVYYGKVTLEKLPEILNQY 152 >gi|242239965|ref|YP_002988146.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703] gi|242132022|gb|ACS86324.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703] Length = 176 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 12 QPS--SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 QP+ +F S+ + Y +R +A I L Q+Q GWV AI +A++L Sbjct: 16 QPAGEAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAITAIADVLG 73 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 74 IPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPGQTTF 132 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +M+ +DTY L P+ L+ +++ + Sbjct: 133 DGRFTLLPTCCLGNCDKGPSMMVDEDTYTRLKPDDLDSLLEQY 175 >gi|197117836|ref|YP_002138263.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087196|gb|ACH38467.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 152 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ +I ++ QS++I +L+ Q + W+ + A++ V LD+ R+ I TFY F Sbjct: 8 IDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKAF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G R + VC T C +RG +++++ + I K ++D S E V C G C Sbjct: 66 SQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDADLKFSLETVNCLGCCA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P+++I + + ++ P + E++ + Sbjct: 125 LGPVMVIDGEYHGNVAPAQSAEVLKNY 151 >gi|291618186|ref|YP_003520928.1| NuoE [Pantoea ananatis LMG 20103] gi|291153216|gb|ADD77800.1| NuoE [Pantoea ananatis LMG 20103] gi|327394579|dbj|BAK12001.1| NADH-quinone oxidoreductase chain E NuoE [Pantoea ananatis AJ13355] Length = 171 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEEN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQY 170 >gi|157371542|ref|YP_001479531.1| NADH dehydrogenase subunit E [Serratia proteamaculans 568] gi|157323306|gb|ABV42403.1| NADH-quinone oxidoreductase, E subunit [Serratia proteamaculans 568] Length = 183 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S E + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 28 AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIAELLGIPASD 85 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG + Sbjct: 86 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRFT 144 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ L PE +E +++ + Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182 >gi|9719441|gb|AAF97801.1|AF281148_5 NADH dehydrogenase I subunit E [Pseudomonas fluorescens] Length = 166 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P S +E SAI + Y R +A I L Q++ GWV A+ + IL + Sbjct: 10 RPFRLSETERSAI--EHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ +DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTADG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 125 RFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 165 >gi|217077617|ref|YP_002335335.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217037472|gb|ACJ75994.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 162 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 39 QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 Q +I +L + QE + ++ A EVV+ L + ++ E+ TFY+ F G + Sbjct: 22 QDILIYILHKIQEKIENNYIPEYAAEVVSEELKIPTSKIYEVLTFYSMFSTKKRGKYV-I 80 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC + PC + ++I + ++ SDG + EE C G C +P++MI + Sbjct: 81 RVCTSLPCHVANGREIINTLKEELKIDFNQTTSDGLFTLEESGCLGLCGVSPVIMINNEY 140 Query: 157 YEDLTPERLEEIIDAFSTGQ 176 Y DLTP+++ EII+ G+ Sbjct: 141 YGDLTPQKVREIINNLKGGE 160 >gi|164687261|ref|ZP_02211289.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM 16795] gi|164603685|gb|EDQ97150.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM 16795] Length = 176 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 7/149 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E++ Y + +I +L +AQ+ G++S + ++ + ++ +ATFY QF Sbjct: 17 LDEILETYGKKK--GYLITILQKAQDAYGYISIDIMNRISEFTGIKVAKIYGVATFYAQF 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L P+G + + +C T C + G E + +V +++ K DG + +V C G C Sbjct: 75 RLQPIG-KYLIMLCQGTACHVNGSEMISQVISEQLNIKDGETTEDGLFTLNQVSCLGCCS 133 Query: 146 NAPMVMI----GKDTYEDLTPERLEEIID 170 AP++MI +TY +LT + + EI++ Sbjct: 134 LAPVMMIKTEDSDETYGNLTKDSVIEILN 162 >gi|157363817|ref|YP_001470584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] gi|157314421|gb|ABV33520.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] Length = 159 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ ++ + +I +L+ Q+ + + +A L++ ++ + TFY+QF Sbjct: 8 VEEILKKHQYKK--ENLIRILLDVQKNYRHLPEDVVNYIAVALELPPAKIFGVGTFYSQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + VC T C + G L++ +++ KP D S ++V C GAC Sbjct: 66 SLKPKGEYT-ILVCDGTACHMEGSLSLLKAIEEELNIKPGEVTRDLKFSVDQVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP ++I + Y +LTPE++++II G+ Sbjct: 125 LAPAMVINDEVYGNLTPEKVKDIIRKLKEGE 155 >gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum] Length = 137 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 38 LFVHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLDLAQRQHGWLPLTA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 + VA+ L M +RV E+ATFYT F PVG R HVQVC T Sbjct: 98 MHYVADYLGMPRMRVYEVATFYTMFMRQPVG-RYHVQVCTT 137 >gi|259907930|ref|YP_002648286.1| NADH dehydrogenase subunit E [Erwinia pyrifoliae Ep1/96] gi|224963552|emb|CAX55042.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae Ep1/96] gi|283477811|emb|CAY73727.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae DSM 12163] Length = 171 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSASERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170 >gi|312879270|ref|ZP_07739070.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas paucivorans DSM 12260] gi|310782561|gb|EFQ22959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas paucivorans DSM 12260] Length = 162 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A + ++ RYPP ++ +L Q ++ R + VA L + RV +ATFY Sbjct: 12 AFDLEALLRRYPPH--PRYLLAILQDVQSACRFLPRTVLGRVAEYLRVPESRVFGVATFY 69 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 L+P G R V+VC T C LRG K++E + + DG S E V C G Sbjct: 70 KALSLTPRG-RKTVKVCMGTACHLRGAPKVLEALEAALGIRSGGTTEDGAFSLETVNCLG 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170 AC AP+V + Y ++P +++ +++ Sbjct: 129 ACALAPVVTVEDTPYGTMSPAKVQAMLE 156 >gi|330981368|gb|EGH79471.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFPQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|281357848|ref|ZP_06244334.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281315795|gb|EFA99822.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 176 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 P R + ++I +L RAQ G++S VA L+++ V + +FY+ F P+G R Sbjct: 38 PDRRRGSLIQILHRAQHLFGYLSEEVQSFVAARLNISRAEVYGVISFYSYFIDQPIG-RY 96 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC T C ++G K+++ + ++ + DG + C GAC AP+VM+ + Sbjct: 97 KINVCTGTACFVKGAPKVLDEFKRRLEIREGESTPDGKFFLGALRCVGACSLAPVVMVNE 156 Query: 155 DTYEDLTPERLEEII 169 Y ++T E++ +I+ Sbjct: 157 KVYGNVTAEKVADIL 171 >gi|300854658|ref|YP_003779642.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM 13528] gi|300434773|gb|ADK14540.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM 13528] Length = 160 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L RAQ+ G++ +AN LD++ +V + TFY+ F + P G + + Sbjct: 25 EGSLISVLHRAQDIFGYLPEELQTFIANKLDISAAKVFGVVTFYSYFTMKPKGKHV-ISI 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G E ++E RN++ K DG + + + C GAC AP+V++ + Sbjct: 84 CMGTACFVKGAENILEEFRNQLKVKDGFTTEDGLFTIDILRCVGACGLAPVVVVDGTVHG 143 Query: 159 DLTPERLEEIIDAFS 173 + E ++ I+ ++ Sbjct: 144 KVKVEDVKGILSQYT 158 >gi|88602557|ref|YP_502735.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanospirillum hungatei JF-1] gi|88188019|gb|ABD41016.1| NADH dehydrogenase subunit E [Methanospirillum hungatei JF-1] Length = 160 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+I +YP ++ + +L Q QE + +++V+ LD+ + + TFY+ F Sbjct: 6 LDEIIEKYPYPAGRT--LGVLREIQIQERHIPMDTLKLVSEKLDLPLSELFALVTFYSFF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEV 138 L PVG + VC TPC ++G EK++E + K L D + E Sbjct: 64 SLKPVGEHL-ITVCMGTPCHVKGAEKILETLEEHLGLSGEVQDGKYLQTTPDNKFTVEIA 122 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++ + + + +TPER+ EI++ + Sbjct: 123 RCFGACSMAPVLHVDGELHGYVTPERIPEILEMYG 157 >gi|188533350|ref|YP_001907147.1| NADH dehydrogenase subunit E [Erwinia tasmaniensis Et1/99] gi|292488840|ref|YP_003531727.1| NADH dehydrogenase I subunit E [Erwinia amylovora CFBP1430] gi|292899991|ref|YP_003539360.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946] gi|188028392|emb|CAO96253.1| NADH dehydrogenase I chain E [Erwinia tasmaniensis Et1/99] gi|291199839|emb|CBJ46963.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946] gi|291554274|emb|CBA21593.1| NADH dehydrogenase I chain E [Erwinia amylovora CFBP1430] gi|312173000|emb|CBX81255.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC BAA-2158] Length = 171 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170 >gi|269139727|ref|YP_003296428.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda EIB202] gi|267985388|gb|ACY85217.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda EIB202] gi|304559594|gb|ADM42258.1| NADH-ubiquinone oxidoreductase chain E [Edwardsiella tarda FL6-60] Length = 166 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ GWV AAI +A +L + V +ATFY+Q PVG R V+ Sbjct: 33 RAASIEALKIVQKEHGWVPDAAIGAIAEVLGIPAADVEGVATFYSQIFRQPVG-RHIVRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ +P DG + C G C P +MI D ++ Sbjct: 92 CDSVVCHINGYQGIKAALEQKLNIQPGETTFDGRFTLLPTCCLGNCDKGPNMMIDDDLHD 151 Query: 159 DLTPERLEEIIDAF 172 LTPER E+++ + Sbjct: 152 HLTPERALELLERY 165 >gi|227112324|ref|ZP_03825980.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 181 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 12 QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 QP++ S ++++A +++ ++ ++A I L Q++ GWV AI +A Sbjct: 15 QPAADSLTKDNAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKERGWVPDGAIHAIA 74 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 75 ELLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI +DT+ +TPE +E +++ + Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQY 180 >gi|301060420|ref|ZP_07201279.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300445474|gb|EFK09380.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 155 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +IP+L AQ GW+ ++++A+ L + V +A+FY QF+L P+G R V V Sbjct: 21 RSELIPILQEAQGIHGWLPGKTMQLIADFLHINEGEVHSVASFYNQFRLMPLG-RKMVTV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +++E + K + D + E V C G C AP+V + + Sbjct: 80 CRGTACHIRGAPQILEDIGQSLRLKEGETSPDLEYTLESVACIGCCALAPVVKVNHKIHG 139 Query: 159 DLTPER 164 ++T ER Sbjct: 140 EMTRER 145 >gi|217077620|ref|YP_002335338.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217037475|gb|ACJ75997.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 163 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 3/140 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I +L +AQE GW+ + + VA L++ V + TFY F P G + +++ Sbjct: 26 KGILINVLHKAQELFGWLPQEVQDHVAKKLNIPSSVVYGVVTFYNFFSTKPKG-KNQIKI 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTY 157 C T C ++G ++++E N++ + DG S V C GAC AP+V++G KD Y Sbjct: 85 CLGTACYVKGADRVMERFLNELGVEESEVTKDGKFSVHGVRCLGACSMAPVVLVGEKDFY 144 Query: 158 EDLTPERLEEIIDAFSTGQG 177 +TP+ + II + G+G Sbjct: 145 GKVTPDMVPGIIKKYK-GEG 163 >gi|239616588|ref|YP_002939910.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505419|gb|ACR78906.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 164 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I +L +AQE G++S + VA+ L + +V + TFY F P G + V++C Sbjct: 28 GVLINVLHKAQELFGYLSEELQQHVADKLGVPLSQVHGVVTFYNFFTTKPKG-KHQVKIC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYE 158 T C +RG ++++E + ++ SDG S V C GAC AP+V++G +D Y Sbjct: 87 LGTACYVRGADRILERFKEELGVDLDEPTSDGLFSLHGVRCLGACSMAPVVLVGERDFYG 146 Query: 159 DLTPERLEEIIDAF 172 +TP+ + II + Sbjct: 147 KVTPDEVSAIIKKY 160 >gi|296134043|ref|YP_003641290.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR] gi|296032621|gb|ADG83389.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens JR] Length = 163 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++VI Y + A+IP+L +AQE G++ ++ L + V + TFY++F Sbjct: 17 LDKVIEEYRGT--PGALIPVLHKAQEIFGYLPEEVQYRISQGLGLPLADVYGVVTFYSRF 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + + VC T C ++G +L+ ++ KP DG S E C GAC Sbjct: 75 TLVPKG-KHDIGVCLGTACYVKGAGELVGWLDKELGLKPGGITRDGLFSLETTRCVGACG 133 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V IG++ LT E+ EII + Sbjct: 134 MAPVVTIGEEVKGRLTVEQFSEIIREY 160 >gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter carbinolicus DSM 2380] gi|77544605|gb|ABA88167.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 159 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E V+ +I RY S +IPLL + QE G++ + E ++ ++ R+ Sbjct: 7 FTKEQIDEVDGLIDRYGAH--PSGLIPLLEKVQELLGYLPLSIQEYISEKTHISPNRIYG 64 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+ F + R VQ+C T C ++G + ++E N DG ++E+ Sbjct: 65 VVTFYSFFTMEA-RARHRVQLCLGTACYVKGADAMVEKIENDYQINFGESTEDGRFTFEK 123 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP+V+I + + +T + L+ I++ F+ Sbjct: 124 ARCVGACGLAPVVIIDGEVFGKVTVDSLDGILEQFA 159 >gi|238798407|ref|ZP_04641888.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC 43969] gi|238717721|gb|EEQ09556.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC 43969] Length = 187 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AESATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|302391062|ref|YP_003826882.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501] gi|302203139|gb|ADL11817.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L Q++ ++ ++ VA + ++ +V +ATFY+QF L P G ++VC Sbjct: 33 LIPILQDVQDEYDYLPEPVLKEVATEIGLSASQVYGVATFYSQFHLEPRGDNI-IRVCMG 91 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E ++ ++ + + + E V C GAC AP++MI DT+ LT Sbjct: 92 TACHVRGAENILNKIEEELEIEEGETTENLEFTLESVACIGACGLAPVIMINDDTHGRLT 151 Query: 162 PERLEEIIDAF 172 P+R+ E++ + Sbjct: 152 PDRVPEVLAQY 162 >gi|77459828|ref|YP_349335.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1] gi|77383831|gb|ABA75344.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +N + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNNLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164 >gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehydrogenase I chain E [Candidatus Kuenenia stuttgartiensis] Length = 154 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWVS ++ +A L++ V +ATFY VG + V Sbjct: 21 KAATIEALKIVQKHRGWVSDDGVKDIAEFLEITPDEVDSVATFYNLIFRRKVGKHV-ILV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G ++++ K+ K SDG + + C G C +AP +MI D Y Sbjct: 80 CDSVSCWILGYNQILDYLNKKLGIKFGETTSDGKFTLLPISCLGTCDHAPALMIDNDLYR 139 Query: 159 DLTPERLEEIIDAFS 173 DLT + L+ I++ +S Sbjct: 140 DLTTDLLDPILEKYS 154 >gi|52549206|gb|AAU83055.1| NADH-ubiquinone oxidoreductase 24 kD subunit [uncultured archaeon GZfos26D6] Length = 153 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E+I Y + +I LL+ Q + W+S+ AI ++ + + ++ IA+FY Sbjct: 9 VDEIIEHYKGE--EGVLIQLLLDIQSEFNWISKEAIAQISERMQIPKSQIYRIASFYEAM 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L PVG R +QVC T C +RG K+++ + K SD S + V C G C Sbjct: 67 SLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCLGCCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P++++ + +TP +E I++ + Sbjct: 126 MGPVIVVDGIYHGKITPAMVEGILETY 152 >gi|160881919|ref|YP_001560887.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] gi|160430585|gb|ABX44148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] Length = 164 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L +AQE G++ +++N LD+ ++ + TFY+QF L P G + + V Sbjct: 31 KGALMPILQKAQEIYGYLPIEVQTIISNTLDIPLEKIYGVVTFYSQFSLLPKG-KFKISV 89 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + K+ DG S E C GAC AP++ + D Y Sbjct: 90 CLGTACYVKGSGDIYNKLMEKLGIASGECTPDGKFSLEACRCIGACGLAPVLTVNDDVYG 149 Query: 159 DLTPERLEEIIDAFS 173 L+ + L+ I+ ++ Sbjct: 150 RLSVDDLDGILAKYA 164 >gi|301062487|ref|ZP_07203133.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300443417|gb|EFK07536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 155 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +IP+L AQ GW+ R ++++A+ L + V +A+FY QF+L P+G R V V Sbjct: 21 RSELIPILQEAQGINGWLPREVMQLIADFLHINEGEVHSVASFYNQFRLMPLG-RKMVTV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +++ + K + D + E V C G C AP+V + + Sbjct: 80 CRGTACHIRGAPQILVDIGQSLRLKEGETSPDLEYTLESVACIGCCALAPVVKVNHKIHG 139 Query: 159 DLTPER 164 ++T ER Sbjct: 140 EMTRER 145 >gi|167037868|ref|YP_001665446.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040765|ref|YP_001663750.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter sp. X514] gi|256750975|ref|ZP_05491858.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300914803|ref|ZP_07132119.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561] gi|307723963|ref|YP_003903714.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter sp. X513] gi|320116285|ref|YP_004186444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855005|gb|ABY93414.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter sp. X514] gi|166856702|gb|ABY95110.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750085|gb|EEU63106.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300889738|gb|EFK84884.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561] gi|307581024|gb|ADN54423.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter sp. X513] gi|319929376|gb|ADV80061.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 160 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I ++ AQE G++ ++ +++ + IATFY++F L P G + + +C Sbjct: 28 GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG ++E + K+ + DG S E C GAC AP++MI + + Sbjct: 87 MGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146 Query: 160 LTPERLEEIIDAF 172 LTP+ ++EI+ F Sbjct: 147 LTPDDVDEILSKF 159 >gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, subunit E [Pseudomonas syringae pv. tomato str. DC3000] gi|213970032|ref|ZP_03398164.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato T1] gi|301381387|ref|ZP_07229805.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato Max13] gi|302062158|ref|ZP_07253699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato K40] gi|302130468|ref|ZP_07256458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925136|gb|EEB58699.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato T1] gi|330875770|gb|EGH09919.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965588|gb|EGH65848.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017274|gb|EGH97330.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFVLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ + + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPATVAKMLEGY 164 >gi|310659597|ref|YP_003937318.1| NADH:ubiquinone oxidoreductase, chain e [Clostridium sticklandii DSM 519] gi|308826375|emb|CBH22413.1| NADH:ubiquinone oxidoreductase, chain E [Clostridium sticklandii] Length = 175 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ +I +Y + + A I +L QE+ G++ ++ +A M ++ +ATFYTQ Sbjct: 20 LIDPIIEKY--GKIKGATITILQGVQEEYGYIPSESLTYIAQKTGMKEAKLYGVATFYTQ 77 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+++PVG + + +C T C + G + + ++ D ++ V C G C Sbjct: 78 FRMNPVG-KNLILLCQGTACHVNGASTIEKAICEELGITEGETTLDKIFTFTNVACLGCC 136 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP++MI +TY LTPE+ E++ Sbjct: 137 SLAPVMMINGETYAKLTPEKTVEVL 161 >gi|300717648|ref|YP_003742451.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661] gi|299063484|emb|CAX60604.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661] Length = 171 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E + + +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIEDNNAFVLSTLERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEDN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIVNLLEQY 170 >gi|253689145|ref|YP_003018335.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755723|gb|ACT13799.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 171 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 38 RAASIEALKIVQKERGWVPDGAINAIADVLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 96 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K+ KP DG + C G C P +MI DT+ Sbjct: 97 CDSVVCHINGYQGVQAALERKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHS 156 Query: 159 DLTPERLEEIIDAF 172 +TPE +E +++ + Sbjct: 157 HVTPEGIESLLEQY 170 >gi|257452668|ref|ZP_05617967.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|257466529|ref|ZP_05630840.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917684|ref|ZP_07913924.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|317059208|ref|ZP_07923693.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313684884|gb|EFS21719.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313691559|gb|EFS28394.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 160 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP+L +AQE G++ + ++ ++ R+ I TFY F +P G + + V Sbjct: 23 EMAIIPILHKAQEIFGYLPEEVQQFISQKTNIPIGRIYGIVTFYNFFSTNPKG-KHQISV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K+++ + ++ DG S + + C GAC AP++MI D + Sbjct: 82 CTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGACGLAPVMMIDSDVHG 141 Query: 159 DLTPERLEEIIDAF 172 L E+++EI+ + Sbjct: 142 KLEKEQVKEILSFY 155 >gi|308272724|emb|CBX29328.1| hypothetical protein N47_J03090 [uncultured Desulfobacterium sp.] Length = 168 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 3/160 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 F EES + E + Y R + +IP+L AQ G++ AI+++A+ + + Sbjct: 4 FSSGGIFMGEESGGALKETLEFYSGKR--NELIPILQEAQGIYGYLPEDAIKIIADFIKI 61 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +A+FY QF+L P+G R V +C T C +RG ++++ ++ K + D Sbjct: 62 TIGEVYSVASFYNQFRLIPLG-RNTVTICRGTACHIRGAPQIVDEIGKVLNLKEGETSED 120 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + E V C G C AP V I + L P + + + + Sbjct: 121 MEYTLETVACIGCCALAPCVKINHKIHGCLEPGQAKGLFN 160 >gi|323141627|ref|ZP_08076509.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067] gi|322413892|gb|EFY04729.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067] Length = 169 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++ +Y + + +IP+L Q ++ + +E +A+ + + TFY+ F Sbjct: 25 IDAILEKY--ADVKGPLIPILQEVQNLYNYLPKDVLEYIADKTGTPISEIYGVVTFYSLF 82 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G R ++VC T C +RG + +++ N++ K H D + E V C GAC Sbjct: 83 HLNPRG-RNVIRVCQGTACHVRGGKTILQALENQLGIKAGHTTDDLRFTLETVACIGACG 141 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++ I DT+ LT ++L I+ + Sbjct: 142 LAPVMQINDDTHGRLTTDKLAGILARY 168 >gi|297544310|ref|YP_003676612.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842085|gb|ADH60601.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 160 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I ++ AQE G++ ++ +++ + IATFY++F L P G + + +C Sbjct: 28 GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG ++E + K+ + DG S E C GAC AP++MI + + Sbjct: 87 MGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146 Query: 160 LTPERLEEIIDAF 172 LTP+ ++EI+ F Sbjct: 147 LTPDDVDEILSKF 159 >gi|238920564|ref|YP_002934079.1| hypothetical protein NT01EI_2676 [Edwardsiella ictaluri 93-146] gi|238870133|gb|ACR69844.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 166 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S F S+ + + I Y R +A I L Q++ GWV AI+ +A +L + Sbjct: 10 SVFVLSDSARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDPAIDAIAGVLGIPAA 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R V+ C + C + G + + + +P DG Sbjct: 68 DVEGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLDIQPGETTFDGRF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI D ++ LTPER E+++ + Sbjct: 127 TLLPTCCLGNCDKGPNMMIDDDLHDHLTPERAIELLERY 165 >gi|320540449|ref|ZP_08040099.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia symbiotica str. Tucson] gi|320029380|gb|EFW11409.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia symbiotica str. Tucson] Length = 183 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +F S E + Y R +A I L Q++ GWV AI +A +L + Sbjct: 27 GAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIAQVLGIPAS 84 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEQKLNIKPGQTTVDGRF 143 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ L PE +E +++ + Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182 >gi|16761250|ref|NP_456867.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765652|ref|NP_461267.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141054|ref|NP_804396.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412778|ref|YP_149853.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180895|ref|YP_217312.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502530|ref|YP_001569642.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612947|ref|YP_001586912.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549676|ref|ZP_02343435.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994673|ref|ZP_02575764.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229694|ref|ZP_02654752.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237342|ref|ZP_02662400.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242443|ref|ZP_02667375.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261659|ref|ZP_02683632.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465972|ref|ZP_02699842.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817945|ref|ZP_02829945.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444429|ref|YP_002041585.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449482|ref|YP_002046378.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470009|ref|ZP_03075993.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736216|ref|YP_002115394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251007|ref|YP_002147283.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265747|ref|ZP_03165821.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361712|ref|YP_002141348.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246025|ref|YP_002216395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387224|ref|ZP_03213836.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929141|ref|ZP_03220284.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353440|ref|YP_002227241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857743|ref|YP_002244394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052941|ref|ZP_03345819.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417787|ref|ZP_03350899.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427013|ref|ZP_03359763.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581186|ref|ZP_03363012.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612346|ref|ZP_03370172.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647301|ref|ZP_03377354.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853109|ref|ZP_03382641.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583189|ref|YP_002636987.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912396|ref|ZP_04656233.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829697|ref|ZP_06547238.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392848|sp|P0A1Y8|NUOE_SALTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|60392849|sp|P0A1Y9|NUOE_SALTI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhi] gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127035|gb|AAV76541.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128528|gb|AAX66231.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863877|gb|ABX20500.1| hypothetical protein SARI_00574 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362311|gb|ABX66079.1| hypothetical protein SPAB_00653 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403092|gb|ACF63314.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407786|gb|ACF68005.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456373|gb|EDX45212.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711718|gb|ACF90939.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631138|gb|EDX49698.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093188|emb|CAR58632.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214710|gb|ACH52107.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244002|gb|EDY26622.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289635|gb|EDY28998.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940541|gb|ACH77874.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604322|gb|EDZ02867.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321685|gb|EDZ06884.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273221|emb|CAR38184.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325189|gb|EDZ13028.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327492|gb|EDZ14256.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335581|gb|EDZ22345.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338362|gb|EDZ25126.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345101|gb|EDZ31865.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349325|gb|EDZ35956.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709546|emb|CAR33891.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467716|gb|ACN45546.1| ATP synthase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247531|emb|CBG25358.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994420|gb|ACY89305.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158883|emb|CBW18396.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913316|dbj|BAJ37290.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086759|emb|CBY96531.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222974|gb|EFX48045.1| NADH-ubiquinone oxidoreductase chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617071|gb|EFY13977.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617623|gb|EFY14522.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624747|gb|EFY21576.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630296|gb|EFY27066.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634477|gb|EFY31210.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639187|gb|EFY35879.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640050|gb|EFY36717.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645729|gb|EFY42253.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651505|gb|EFY47880.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656064|gb|EFY52363.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659417|gb|EFY55664.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665877|gb|EFY62060.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669883|gb|EFY66024.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673869|gb|EFY69966.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678627|gb|EFY74683.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683577|gb|EFY79591.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687653|gb|EFY83623.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715374|gb|EFZ06945.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130656|gb|ADX18086.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193513|gb|EFZ78718.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198418|gb|EFZ83520.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201932|gb|EFZ86994.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208530|gb|EFZ93469.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209761|gb|EFZ94685.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218297|gb|EGA03007.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222946|gb|EGA07295.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227381|gb|EGA11546.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232292|gb|EGA16395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235674|gb|EGA19758.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241165|gb|EGA25201.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244907|gb|EGA28909.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250026|gb|EGA33920.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251638|gb|EGA35506.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254949|gb|EGA38740.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260329|gb|EGA43948.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268095|gb|EGA51572.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270812|gb|EGA54250.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624146|gb|EGE30491.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628532|gb|EGE34875.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989258|gb|AEF08241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 166 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + ++ KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 HLTPEAIPELLERY 165 >gi|325660924|ref|ZP_08149551.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085361|ref|ZP_08334447.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472431|gb|EGC75642.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408144|gb|EGG87634.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 163 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++E + EVI + Q A++ +L +AQE G+V ++++ +D+ ++ Sbjct: 9 FQGTKEQETVLREVIEKRKSE--QGALMAVLQQAQEIYGYVPTEVQTIISDEMDIPLHKI 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ FY QF LSP G + V +C T C ++G + + +DG S Sbjct: 67 EEVVDFYPQFTLSPKG-KYQVSICLGTACFVKGAGDVYNKLTEVLGIGGGECTADGKFSL 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++M+ D Y + E +EEI+ + Sbjct: 126 DASRCIGACGMAPILMVNDDVYNHVKAEDVEEILAKY 162 >gi|125972949|ref|YP_001036859.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium thermocellum ATCC 27405] gi|256005705|ref|ZP_05430661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 2360] gi|281417160|ref|ZP_06248180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum JW20] gi|125713174|gb|ABN51666.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium thermocellum ATCC 27405] gi|255990336|gb|EEU00462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 2360] gi|281408562|gb|EFB38820.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum JW20] gi|316940815|gb|ADU74849.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 1313] Length = 165 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ ++S + S ++A+I +L QE+ ++ + ++ L ++ R+ +ATFY Sbjct: 13 MIDNILSEHGTS--ETAIIAILQSIQEEYHYIPKEVFPYLSKKLKVSEARIFSVATFYEN 70 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH---QKPLHRNSDGTLSWEEVECQ 141 F L P G + ++VC T C +R +IE R ++ KP D + E V C Sbjct: 71 FSLEPKG-KYIIKVCDGTACHVRKSIPIIERLRKELGLSGTKP--TTDDLMFTVETVSCL 127 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP++ + Y ++TP++ E+I G D Sbjct: 128 GACGLAPVITVNDKVYAEMTPDKASELIKQLREGDAD 164 >gi|299146442|ref|ZP_07039510.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23] gi|298516933|gb|EFI40814.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23] Length = 162 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ +G++ ++A+ L + +V + TFYT F + P G + VC Sbjct: 32 LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMIPKGKHP-ISVCMG 90 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 91 TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 150 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 151 PVDVKKIIE 159 >gi|269792084|ref|YP_003316988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099719|gb|ACZ18706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 156 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E++ RYP R ++ L Q + V R A+E + + RV +ATFY Sbjct: 10 LKEILHRYP--RHPRFLLAFLQDVQREFKHVPREAMEASSERFMVPMSRVYSVATFYRAL 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R ++VC T C LRG +++E + + DG S E V C GAC Sbjct: 68 SLVPRG-RKTIKVCMGTACHLRGAPRVLETIEEALQVRCGGTTQDGEFSVEAVNCLGACA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP+VM+ Y +T ++ E+++ Sbjct: 127 LAPVVMVEDRCYGSMTAAKVREMLE 151 >gi|289578039|ref|YP_003476666.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter italicus Ab9] gi|289527752|gb|ADD02104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter italicus Ab9] Length = 160 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I ++ AQE G++ ++ +++ + IATFY++F L P G + + +C Sbjct: 28 GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIFGIATFYSRFTLKPSG-KYKINLC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG ++E + K+ + DG S E C GAC AP++MI + + Sbjct: 87 MGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146 Query: 160 LTPERLEEIIDAF 172 LTP+ ++EI+ F Sbjct: 147 LTPDDVDEILSKF 159 >gi|15597836|ref|NP_251330.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAO1] gi|107102160|ref|ZP_01366078.1| hypothetical protein PaerPA_01003210 [Pseudomonas aeruginosa PACS2] gi|116050627|ref|YP_790554.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa UCBPP-PA14] gi|218891199|ref|YP_002440065.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa LESB58] gi|254235624|ref|ZP_04928947.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719] gi|254241072|ref|ZP_04934394.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192] gi|296388899|ref|ZP_06878374.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAb1] gi|313107678|ref|ZP_07793860.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016] gi|81540767|sp|Q9I0J8|NUOE_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|9948708|gb|AAG06028.1|AE004692_7 NADH dehydrogenase I chain E [Pseudomonas aeruginosa PAO1] gi|115585848|gb|ABJ11863.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa UCBPP-PA14] gi|126167555|gb|EAZ53066.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719] gi|126194450|gb|EAZ58513.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192] gi|218771424|emb|CAW27191.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa LESB58] gi|310880362|gb|EFQ38956.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016] Length = 166 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q+Q GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|270262811|ref|ZP_06191082.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13] gi|270043495|gb|EFA16588.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13] Length = 183 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S E + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 28 AFVLSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPASD 85 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG + Sbjct: 86 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRFT 144 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ L PE +E +++ + Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182 >gi|304316575|ref|YP_003851720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778077|gb|ADL68636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 160 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F EE +VI ++I ++ AQE G++ + ++ +++ + Sbjct: 8 FDEEKVNKFKKVIDEL--KNVDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 IATFY++F L P G + + +C T C ++G +++ + K+ SDG S E Sbjct: 66 IATFYSRFTLKPSG-KYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLEA 124 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +++I+ F Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKF 159 >gi|82777693|ref|YP_404042.1| NADH dehydrogenase subunit E [Shigella dysenteriae Sd197] gi|309785011|ref|ZP_07679644.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617] gi|81241841|gb|ABB62551.1| NADH dehydrogenase I chain E [Shigella dysenteriae Sd197] gi|308927381|gb|EFP72855.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617] Length = 166 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q +F S + + Y R +A I L Q+Q GWV AI +A++L + Sbjct: 8 QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 66 ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C +MI +DT+ LTPE + E+++ + Sbjct: 125 RFTLLPTCCLGNCDKGLNMMIDEDTHAHLTPEAIPELLERY 165 >gi|308187601|ref|YP_003931732.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1] gi|308058111|gb|ADO10283.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1] Length = 171 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 4/173 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPGLLEQY 170 >gi|114567217|ref|YP_754371.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338152|gb|ABI69000.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 166 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE+ ++IS +P + +I ++ ++ R+A+E+ A + + + +V +A Sbjct: 7 EENIEGFRKIISGFPGEK--RYIIAIMHELSRCYRYLPRSALELTAEYVGVPFSQVYSMA 64 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L P G R +++VC T C ++G L++ + P +D S E V Sbjct: 65 TFYRAFSLQPRG-RFNIKVCDGTTCHIKGSNILLDEIHKNLGIGPGETTADREFSLETVN 123 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP +++ + Y + L+EII + G GD Sbjct: 124 CIGACAIAPALLVNERVYPRVNAAALKEIIKEYRGG-GDN 162 >gi|332800414|ref|YP_004461913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter sp. Re1] gi|332698149|gb|AEE92606.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter sp. Re1] Length = 167 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 4/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 VNE++ +Y S +I + QE ++ + ++ + +A R+ +ATFY F Sbjct: 13 VNEILEKYDYK--PSNLISIFQEVQEIYRYLPEEILVYISTAMRIAPSRIFGVATFYESF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144 L P G + ++VC T C +R +K++ + ++ K + +D L + E V C GAC Sbjct: 71 SLEPKG-KNLIKVCDGTACHVRNSDKILSTTKEILNLKGDAKTTDDMLFTLETVSCLGAC 129 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170 AP+++I Y ++TPE++ ++I+ Sbjct: 130 GLAPVIVINDKVYGNMTPEKVRQLIN 155 >gi|257467681|ref|ZP_05631777.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061975|ref|ZP_07926460.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313687651|gb|EFS24486.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 164 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S++I +L +AQE G++ E +A L++ +V + +FY F + P G + + V Sbjct: 23 KSSLIIVLHKAQEIFGYIPAEVQEFIAEELEVPVAKVYGVVSFYNFFSMEPKG-KYQISV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG K++E +++ + DG S + + C GAC AP+V++GK+ + Sbjct: 82 CTGTACYVRGAGKVLESLEKELNIEVGGVTKDGLFSLDCLRCVGACGLAPVVIVGKEVHG 141 Query: 159 DLTPERLEEIIDAF 172 + P ++++I+ + Sbjct: 142 KVKPTDVKKLIEEY 155 >gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter tengcongensis MB4] gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter tengcongensis MB4] Length = 169 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I ++ AQE G++ ++ + + + I+TFY++F L P G + + +C Sbjct: 37 GSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSG-KYKINLC 95 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG L+E + K+ + DG S E C GAC AP++MI + + Sbjct: 96 MGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGR 155 Query: 160 LTPERLEEIIDAF 172 LTP ++EI+ F Sbjct: 156 LTPNDVDEILKKF 168 >gi|332162386|ref|YP_004298963.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606465|emb|CBY27963.1| NADH-ubiquinone oxidoreductase chain E [Yersinia enterocolitica subsp. palearctica Y11] gi|325666616|gb|ADZ43260.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860333|emb|CBX70646.1| NADH-quinone oxidoreductase subunit E [Yersinia enterocolitica W22703] Length = 187 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 2 SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 +V LA +P++ F S E + Y +R +A I L Q+Q GWV Sbjct: 15 NVANLAVNAAEPATTAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 73 DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|269122187|ref|YP_003310364.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268616065|gb|ACZ10433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 158 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+I +L +AQE G++ + E +A+ L+ RV + +FY+ F + P G A + V Sbjct: 25 EEALITVLHKAQEIFGYLPKEVQEFIADKLNEPLARVYGVVSFYSFFTMIPKGDIA-ISV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG EK+++ ++++ K + DG S + + C GAC AP+V++ Y+ Sbjct: 84 CLGTACFVRGAEKVLDEFQSRLGIKAGETSPDGKFSLDVLRCIGACGIAPVVLVNGKVYK 143 Query: 159 DLTPERLEEIIDAF 172 + ++ I+ + Sbjct: 144 KVEAGEVKNIVSEY 157 >gi|148546981|ref|YP_001267083.1| NADH dehydrogenase subunit E [Pseudomonas putida F1] gi|148511039|gb|ABQ77899.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida F1] Length = 165 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVNQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|114566200|ref|YP_753354.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337135|gb|ABI67983.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 182 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L +AQ+ G++ + ++ +A L + +V IATFYTQF+L P G + + Sbjct: 36 KGSLIAILQQAQDIYGYLPLSVLKCIARELGIKPAKVYGIATFYTQFRLQPAG-KYQIMF 94 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G E++ ++ K DG S E C G C AP++MI Y Sbjct: 95 CQGTACHVNGSERIESTLCQELKIKRGETTPDGLFSLESAACLGCCSLAPVMMINGQAYG 154 Query: 159 DLTPERLEEIIDAFSTGQGDTIRPG 183 L+ E+ II + ++ G Sbjct: 155 PLSAEKAIAIIRKIKAAESSSLVGG 179 >gi|210616164|ref|ZP_03290967.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787] gi|210149926|gb|EEA80935.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787] Length = 184 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L +AQE G++ +++N + ++ +ATFY+QF L+P G R + V Sbjct: 51 KGALMPILQKAQEIYGYLPIEVQTMISNETKIPLEKIYGVATFYSQFTLNPKG-RYRISV 109 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + K+ DG S + C GAC AP++M+ D Y Sbjct: 110 CLGTACYVKGSGDIYNYLMEKLGIVGGECTPDGKFSLDACRCVGACGLAPVMMVNDDVYG 169 Query: 159 DLTPERLEEIIDAF 172 LT + +++I+ + Sbjct: 170 RLTVDDIDDILAKY 183 >gi|171059433|ref|YP_001791782.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix cholodnii SP-6] gi|170776878|gb|ACB35017.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix cholodnii SP-6] Length = 173 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ G + A+ +A L+++ V + T+Y F+ P G R +QVC Sbjct: 27 ALLPILHGVQDAIGHIPSEAVPEIARALNLSRAEVHGVITYYHHFRAEPAG-RHVLQVCR 85 Query: 101 TTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C RG E L+ R ++ +HR++DG S E V C G C ++P + I + + Sbjct: 86 AESCQARGGEALLAQARERLGCSADVHRSADGAWSVEPVYCLGLCASSPAIQIDERQHAR 145 Query: 160 LTPERLEEIIDA 171 +T RL+ ++DA Sbjct: 146 VTATRLDALLDA 157 >gi|26990816|ref|NP_746241.1| NADH dehydrogenase subunit E [Pseudomonas putida KT2440] gi|325277475|ref|ZP_08143080.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51] gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subunit [Pseudomonas putida KT2440] gi|324097391|gb|EGB95632.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51] Length = 165 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the NADH:ubiquinone oxidoreductase [Candidatus Kuenenia stuttgartiensis] Length = 162 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ G++ A+E V+ D+ R+ + TFY+QF P G V++C Sbjct: 33 LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRGKHT-VRLCAG 91 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G + E + + K D + + V C G C AP++MI Y LT Sbjct: 92 TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 151 Query: 162 PERLEEIIDAF 172 E+ EEI+ ++ Sbjct: 152 EEKTEEILKSY 162 >gi|304313909|ref|YP_003849056.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] gi|302587368|gb|ADL57743.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] Length = 149 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S +IP+L Q+ G++ A+E VA ++ V +ATFY QF+ P G R H+ VC Sbjct: 17 SEIIPILQDIQDVYGYLPEHALEEVAGFTGVSKTHVYGVATFYAQFRFKPKG-RKHIMVC 75 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C + G E++++ + D S E V C G C AP M+ + Sbjct: 76 TGTACHVSGAEQVLDALERHLGIGEGDVTEDMEYSLESVGCIGCCSLAPCAMVNDEVVSR 135 Query: 160 LTPERLEEII 169 + P R+ +I Sbjct: 136 IKPSRVSKIF 145 >gi|222053328|ref|YP_002535690.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221562617|gb|ACM18589.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 150 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++I ++ +S++I +L+ Q + W+ + A+ VA L + R+ IATFY F Sbjct: 6 IDQIIDKHNGE--ESSLIQILLDIQSEHHWLPKEALNRVAEKLQVPMSRIQHIATFYKAF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R V VC T C +RG +++++ ++ KP +++ S E V C G C Sbjct: 64 SLVPKG-RHEVHVCMGTACHVRGAQRVLDTVQDATGIKPGETDAELKFSLETVNCLGCCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 P++ + + ++ P ++ +++ Sbjct: 123 LGPVMEVDGKHHGNIAPSQIASVLN 147 >gi|294102541|ref|YP_003554399.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium colombiense DSM 12261] gi|293617521|gb|ADE57675.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium colombiense DSM 12261] Length = 156 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +IP+L AQ + G++ +E ++ L + + +ATFY QF L P G R ++V Sbjct: 23 KGGLIPILQEAQHEFGYLPPEVMETISKELKIPKAEIYGVATFYAQFHLKPRG-RHVIRV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG K++E + D + E V C GAC AP++M+ T+ Sbjct: 82 CRGTACHVRGSLKILEKVKELTGVSENETTDDLRFTIEPVACLGACGLAPVMMVDSQTFG 141 Query: 159 DLTPERLEEIIDAF 172 L P+ + ++ F Sbjct: 142 RLAPDMVAGVLAKF 155 >gi|239616591|ref|YP_002939913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505422|gb|ACR78909.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 167 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 42 VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +I L Q+ G ++ A E + +I+ + ++ E+ TFYT F G + ++VC Sbjct: 28 LINTLHAIQDYYGNYIPLEATEALRDIMGIPLSKIYEVLTFYTMFSTEKRG-KYIIRVCK 86 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 + PC + G EK++E ++ + + DG + EE C G C +P++MI + Y +L Sbjct: 87 SLPCHVTGGEKVVEALKDTLGIDFGNTTEDGLFTLEESSCLGLCGVSPVMMINDEAYGNL 146 Query: 161 TPERLEEIID 170 TP+++E+II+ Sbjct: 147 TPDKVEKIIN 156 >gi|320354166|ref|YP_004195505.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Desulfobulbus propionicus DSM 2032] gi|320122668|gb|ADW18214.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Desulfobulbus propionicus DSM 2032] Length = 166 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A+I L AQE G++ R + +A L + RV +ATFY F+L P G + VC Sbjct: 30 DALIETLHTAQETLGYLDRDTLAYIAEKLKIPPARVFGVATFYNHFRLKPKGNHT-LAVC 88 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154 T C ++G ++++ + H +P D LS EV C GAC AP++ +IGK Sbjct: 89 TGTACHVKGNDQILAWLGEQYHLRPGETTPDNHLSLVEVRCVGACALAPVIVSDGELIGK 148 Query: 155 DTYED 159 +++ Sbjct: 149 KNFDE 153 >gi|238763929|ref|ZP_04624886.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC 33638] gi|238697897|gb|EEP90657.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC 33638] Length = 187 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 2 SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 +V LA +P++ F S E + Y +R +A I L Q+Q GWV Sbjct: 15 NVANLAVNAAEPAATIEAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 73 DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|302875424|ref|YP_003844057.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|307689022|ref|ZP_07631468.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|302578281|gb|ADL52293.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 157 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 2/137 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S+++ LL Q G++ + ++ LD++ R+ +ATFY F L P G + ++V Sbjct: 21 ESSIVHLLQSIQNHYGFLPKEVFSYLSQKLDISEARIYSVATFYKNFSLDPKG-KYIIKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C ++ +++ R +++ + +D L + E V C GAC AP++M+ Y Sbjct: 80 CDGTACHVKKSIPVLDRLRKELNLSEVKLTTDDLLFTVETVHCLGACGRAPVLMVNNKVY 139 Query: 158 EDLTPERLEEIIDAFST 174 +TP++ E++ S Sbjct: 140 PSMTPDKAIELVKNLSV 156 >gi|254167374|ref|ZP_04874226.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|197623637|gb|EDY36200.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] Length = 149 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY+ F Sbjct: 5 VLQIINKHKNK--DSKLLAILHDVQDEFGYIPEDAIKTIAKELGMKKGEVYDAASFYSFF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G + V +C C ++G K+IE + K DG +++ VE G C Sbjct: 63 RFKPEG-KHEVMICDCIVCHIKGSGKIIERIEKEFGVKMGETTKDGKYTFKVVEGLGHCE 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 ++P++M+ Y DLTP+++ EI+ Sbjct: 122 SSPVMMLDGKIYGDLTPDKVVEIL 145 >gi|260598702|ref|YP_003211273.1| NADH dehydrogenase subunit E [Cronobacter turicensis z3032] gi|260217879|emb|CBA32428.1| NADH-quinone oxidoreductase subunit E [Cronobacter turicensis z3032] Length = 166 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + + KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQSAIEKHLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 YLTPEGIPELLEQY 165 >gi|261820795|ref|YP_003258901.1| NADH dehydrogenase subunit E [Pectobacterium wasabiae WPP163] gi|261604808|gb|ACX87294.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium wasabiae WPP163] Length = 181 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 3/167 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 +A+ + ++F S+ + Y +R +A I L Q+ GWV AI +A Sbjct: 17 VADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIHAIA 74 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 75 DLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ +TPE +E +++ + Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIETLLEQY 180 >gi|322831987|ref|YP_004212014.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602] gi|321167188|gb|ADW72887.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602] Length = 178 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E P F S+ + Y +R +A I L Q+ GWV AI ++++L Sbjct: 17 EPVVPPVFVLSDAEREAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIYAISDVL 74 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + + ++H KP Sbjct: 75 GIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQQLHIKPGETT 133 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + +++ ++ Sbjct: 134 EDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIGSLLERYA 178 >gi|257453970|ref|ZP_05619246.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus SK60] gi|257448635|gb|EEV23602.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus SK60] Length = 169 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E + YP SR +A + L Q + GWV A + +ANIL + V +ATFY + Sbjct: 25 IHEFMHHYPQSR--AASLDALKIVQRRNGWVDDAQVNAIANILKIPVTDVEGVATFYNRI 82 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 SPVG R + VC + C L G E L + + D + + C G C Sbjct: 83 YRSPVG-RHVILVCDSIGCYLVGAENLGQAFERTLGISFGQTTPDNRFTLLPICCLGNCD 141 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P V+I +DTY + E + E+++ ++ Sbjct: 142 KGPAVLIDEDTYGPVQIEEIAELLEQYA 169 >gi|167034690|ref|YP_001669921.1| NADH dehydrogenase subunit E [Pseudomonas putida GB-1] gi|166861178|gb|ABY99585.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida GB-1] Length = 165 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164 >gi|206896425|ref|YP_002246547.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM 5265] gi|206739042|gb|ACI18120.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM 5265] Length = 172 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I +L AQE G++ E+++ + + I TFY++F + P G + + +C Sbjct: 28 GSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIVTFYSRFSIVPAG-KYKISLC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG +++E + + SDG S E C GAC AP++MI + Y Sbjct: 87 LGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAARCLGACALAPVMMINGEVYGR 146 Query: 160 LTPERLEEII 169 LTP+ ++I Sbjct: 147 LTPDEAVKVI 156 >gi|225175950|ref|ZP_03729942.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168538|gb|EEG77340.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 182 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 2/144 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + IP+L Q G+V+ ++ V+ + + + I TFY+QF++ P+G +QVC Sbjct: 33 GSAIPILQDIQNTFGYVAPEVLQRVSELSGILESELYSIVTFYSQFRMEPIGENL-IQVC 91 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C L G E++ E ++ K + DG + E+V C G C AP++ + ++TY Sbjct: 92 HGTACHLAGAERVSEAIMHETGAKDGGTSPDGKFTLEKVACLGCCSLAPVITVNEETYGR 151 Query: 160 LTPERLEEIIDAFSTGQGDTIRPG 183 + P + +++ + GQ + + G Sbjct: 152 VAPNEVGKVLKEIN-GQTEDKKAG 174 >gi|154248926|ref|YP_001409751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] gi|154152862|gb|ABS60094.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 157 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++ +Y + +I +L+ Q++ + R + + L + ++ +ATFY QF Sbjct: 8 VEKILEKY--GYKKEMLIKILLEVQKEYRHIPREVVNYIGVALGIPPAKIYGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + +C T C + G L++ ++ KP D S ++V C GAC Sbjct: 66 SLKPKGEYT-ILICDGTACHMEGSMSLVKAIEEEVGIKPGEVTPDLKFSLDKVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP ++I + Y +L PE+++EI+ Sbjct: 125 LAPAMVINGEVYGNLKPEKVKEIL 148 >gi|254977027|ref|ZP_05273499.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-66c26] gi|255094354|ref|ZP_05323832.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile CIP 107932] gi|255316107|ref|ZP_05357690.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-76w55] gi|255518768|ref|ZP_05386444.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-97b34] gi|255651946|ref|ZP_05398848.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-37x79] gi|260684910|ref|YP_003216195.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260688568|ref|YP_003219702.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|306521695|ref|ZP_07408042.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile QCD-32g58] gi|260211073|emb|CBA66443.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260214585|emb|CBE07150.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] Length = 165 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E I+++ + ++ + A+I +L AQ G++ + VA L +A +V + Sbjct: 13 DELDIFIDSLTTK------EGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVV 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F PVG + + VC T C ++G +K++ ++ K SD S E + Sbjct: 67 TFYSYFTTEPVG-KYKISVCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLR 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V + Y + P+++ EI+D + Sbjct: 126 CLGACGLAPVVTVNGKVYGKVKPDQVSEILDTY 158 >gi|163782977|ref|ZP_02177972.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] gi|159881657|gb|EDP75166.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] Length = 154 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F +E +N+ I+ +P R + A++ L Q+ G+V ++ +A++LD+ V + Sbjct: 2 FEQELLEKLNQHINYFP--RKEQAILVCLHEIQDHYGYVPPESLRPLADMLDLPLNHVEQ 59 Query: 78 IATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + FY F + +P R ++VC + C G ++L++ + KP DG Sbjct: 60 VVAFYDMFDRQTPAKYR--IRVCVSVVCHFLGKQELLKALEKALKIKPGEVTPDGKFKIV 117 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V+C GAC AP+ M+ +DTY+ E+L E++ ++ Sbjct: 118 PVQCLGACSEAPVFMVNEDTYKFEGEEKLNEVLSKYT 154 >gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571680|ref|ZP_04849086.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838888|gb|EES66973.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 158 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A+ L + +V + TFYT F ++P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++II+ Sbjct: 147 PVDVKKIIE 155 >gi|332981957|ref|YP_004463398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella australiensis 50-1 BON] gi|332699635|gb|AEE96576.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella australiensis 50-1 BON] Length = 150 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V E+++R+ + + ++P+L+ Q + ++S ++ V+ +L + RV +ATFY Sbjct: 1 MVEEIVNRHGIA--EDKLMPILLDIQNSNDKHYLSEDDLKQVSKLLGIPESRVYSVATFY 58 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F L P G + VQ+C PC++ G +I+ R+ + SDG + E C G Sbjct: 59 SFFSLQPRG-KYIVQICDNAPCIVNGAYNVIDDFRHILGIDMGQTTSDGLFTLEYSSCLG 117 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169 C +AP I + Y DL E+++ I+ Sbjct: 118 CCSHAPAARIAGELYGDLDSEKIKSIL 144 >gi|148657646|ref|YP_001277851.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus sp. RS-1] gi|148569756|gb|ABQ91901.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Roseiflexus sp. RS-1] Length = 178 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L RAQE G++S + +AN L + RV +ATFY F L+P G + V VC Sbjct: 39 ALIEVLHRAQELFGYLSTDLLLFIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCL 97 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +RG ++ + K H DG LS E C GAC AP V+ Sbjct: 98 GTACYVRGAAAILAAAEQMLGIKAGHTTPDGRLSLETARCLGACGIAPTVVFDGTVTGHQ 157 Query: 161 TPERLEEIIDAFSTGQG 177 TPE+++ ++ TG+G Sbjct: 158 TPEQVQVWLERL-TGEG 173 >gi|15679544|ref|NP_276661.1| NADH dehydrogenase subunit E [Methanothermobacter thermautotrophicus str. Delta H] gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, subunit A [Methanothermobacter thermautotrophicus str. Delta H] Length = 149 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +IP+L Q+ G++ A+E VA+ ++ + +ATFY QF+ P G R H+ V Sbjct: 16 KSEIIPILQDIQDAYGYLPEDALEEVASFTGVSRAHLYGVATFYAQFRFKPRG-RKHIMV 74 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G E++++ + + D S E V C G C AP M+ + Sbjct: 75 CTGTACHVSGAEQVLDALERHLGIEEGDVTDDMEYSLESVGCIGCCSLAPCAMVNDEVVS 134 Query: 159 DLTPERLEEII 169 + P R+ +I Sbjct: 135 RIKPSRVGKIF 145 >gi|148270499|ref|YP_001244959.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170289106|ref|YP_001739344.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|147736043|gb|ABQ47383.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170176609|gb|ACB09661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] Length = 161 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ +Y R +I +L+ QE ++ I V+ + + ++ +ATFY QF Sbjct: 8 VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G A + VC T C + G ++++ + P + D S ++V C GAC Sbjct: 66 SLKPKGKYA-IMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP+++I + Y +LT ++++EI+ Sbjct: 125 LAPVMVINGEVYGNLTADKVKEIL 148 >gi|326202422|ref|ZP_08192291.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987540|gb|EGD48367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 178 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+I +L +AQ G++ R VA L + V + +FY+ F P G V V Sbjct: 36 KGALIEILHKAQNIFGYLPRDVQLFVARKLGIPGAEVYGVVSFYSYFTTKPGGLHT-VSV 94 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K+IE + K+ + DG + ++V C GAC AP+VM+ + Sbjct: 95 CMGTACFVRGADKVIEKFKEKLGIESNETTKDGLFTLKDVRCIGACGLAPVVMVDDKVFG 154 Query: 159 DLTPERLEEIIDAFSTGQ 176 + E +++II+ + + + Sbjct: 155 RVKVEDVDDIIEMYRSNK 172 >gi|323702071|ref|ZP_08113739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532953|gb|EGB22824.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 162 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L Q + G++ + + +A L ++ VL +ATFY QF L P G ++VC Sbjct: 25 LIAILQETQAEYGYLPKEILTYIATALGVSPATVLGVATFYAQFSLIPKGKYV-IRVCDG 83 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +RG E ++ R ++ P + +D + + E V C GAC AP+V+ ++ + + Sbjct: 84 TACHVRGSEPIMMAIRKELGISPDNPTTDDLMFTVETVSCLGACGLAPVVVAHEEVHGQM 143 Query: 161 TPERLEEIIDAFS 173 TP+ + EII+ + Sbjct: 144 TPQGIVEIINKLA 156 >gi|302392633|ref|YP_003828453.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302204710|gb|ADL13388.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 164 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 5/148 (3%) Query: 26 VNEVISRYPPSRCQSAV-IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++E+I + +R Q + I +L +AQ+ G +SR +A LD+ + +V + +FY+ Sbjct: 20 LDEIIEQ---NRGQEGILINVLHQAQQIFGHLSRKIQVHIAEGLDIPFSKVYAVISFYSL 76 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F G + ++VC T C ++G E ++E + ++ +P DG + E C GAC Sbjct: 77 FSTEMRG-KYTIEVCTGTACYVKGAEDILEQFKTELEIEPGETTEDGLFTLETTRCIGAC 135 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++ +G DT+ L +++ +++D + Sbjct: 136 GMAPVIKVGDDTHGRLKEDQVSDLLDKY 163 >gi|123441679|ref|YP_001005663.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088640|emb|CAL11435.1| NADH dehydrogenase I chain E [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 172 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+Q GWV AI +A Sbjct: 9 AEPAITAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 66 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 67 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 125 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 171 >gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630] gi|255102608|ref|ZP_05331585.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-63q42] gi|255308434|ref|ZP_05352605.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile ATCC 43255] gi|255657358|ref|ZP_05402767.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-23m63] gi|296451828|ref|ZP_06893547.1| Fe-hydrogenase [Clostridium difficile NAP08] gi|296879776|ref|ZP_06903750.1| Fe-hydrogenase [Clostridium difficile NAP07] gi|115252465|emb|CAJ70308.1| putative iron-only hydrogenase,electron-transferring subunit HymA-like [Clostridium difficile] gi|296259307|gb|EFH06183.1| Fe-hydrogenase [Clostridium difficile NAP08] gi|296429247|gb|EFH15120.1| Fe-hydrogenase [Clostridium difficile NAP07] Length = 165 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E I+++ + ++ + A+I +L AQ G++ + VA L +A +V + Sbjct: 13 DELDIFIDSLATK------EGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVV 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F PVG + + VC T C ++G +K++ ++ K SD S E + Sbjct: 67 TFYSYFTTEPVG-KYKISVCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLR 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V + Y + P+++ EI+D + Sbjct: 126 CLGACGLAPVVTVNGKVYGKVKPDQVSEILDTY 158 >gi|66219966|gb|AAY42999.1| Nqo2 [Rhodothermus marinus] Length = 224 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+EE + +Y AV+ L AQE+ G++ +++VA+ L + Y +V Sbjct: 28 FTEEEKAKIARFKEQY--LEPAGAVMKTLWLAQEKFGFLPPEVLQLVADELGIPYAQVYG 85 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYTQ+ G + VC C + G ++ K+ DG + +E Sbjct: 86 VATFYTQYYKEKKGKYV-LDVCTCFTCQVCGGYDILHYLEEKLGIHKGETTPDGLFTLQE 144 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 VEC GAC +AP++ + Y +LTPE+++++++ G+ Sbjct: 145 VECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGK 184 >gi|150021057|ref|YP_001306411.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149793578|gb|ABR31026.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 163 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I +L +AQE GW+ + VA L + V + TFY F P G + +++ Sbjct: 25 KGILINVLHKAQELFGWLPKEVQTHVAEKLKIPPSVVYGVITFYNFFSTKPKG-KHQIKI 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTY 157 C T C ++G ++++E N+++ K DG S V C GAC AP+V++G K+ + Sbjct: 84 CLGTACYVKGADRVMERFLNELNVKEGEVTKDGNFSVHGVRCLGACSMAPVVLVGEKEFF 143 Query: 158 EDLTPERLEEIIDAFSTGQG 177 +TP+ + II F G+G Sbjct: 144 GKVTPDMVPGIIKKFQ-GEG 162 >gi|238759965|ref|ZP_04621118.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236] gi|238701792|gb|EEP94356.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236] Length = 187 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + Y +R +A I L Q+Q GWV AI +A +L + V Sbjct: 33 FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPASDV 90 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K+ +P DG + Sbjct: 91 EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L PE +E++++ + Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|291544583|emb|CBL17692.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp. 18P13] Length = 166 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI---RVLEIATFYTQFQLSPVGTRAH 95 + A++P++ +AQ+ G++ IEV I DM I ++ +ATFY+QF L P G + Sbjct: 32 KGALMPIMQKAQDIYGYLP---IEVQTIISDMTGIPLEKIYGVATFYSQFSLYPKG-QYT 87 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G + E + + + +DG S E C GAC AP++ I D Sbjct: 88 ISVCLGTACYVKGSGDVFEKLKQILGIEDGQCTADGKFSLEACRCIGACGLAPVMTINDD 147 Query: 156 TYEDLTPERLEEIIDAFS 173 Y LT E L I++ ++ Sbjct: 148 VYGRLTVEELPAILEKYN 165 >gi|156933125|ref|YP_001437041.1| NADH dehydrogenase subunit E [Cronobacter sakazakii ATCC BAA-894] gi|156531379|gb|ABU76205.1| hypothetical protein ESA_00935 [Cronobacter sakazakii ATCC BAA-894] Length = 166 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A +L + V +ATFY+Q PVG R ++ Sbjct: 33 RAASIEALKIVQKQRGWVPDGAIYAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + + KP DG + C G C P +MI +DT+ Sbjct: 92 CDSVVCHITGYQGIQSAIEKHLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMINEDTHS 151 Query: 159 DLTPERLEEIIDAF 172 LTPE + E+++ + Sbjct: 152 YLTPEGIPELLEQY 165 >gi|225569034|ref|ZP_03778059.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM 15053] gi|225161833|gb|EEG74452.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM 15053] Length = 164 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ +EE + VI+ + A++P+L RAQ+ G++ ++++N + ++ Sbjct: 10 FTGTEEQEKELLGVINELKDEK--GALMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+QF LSP G R + VC T C ++G + K+ DG S Sbjct: 68 YGVTTFYSQFNLSPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++MI + Y LT + +++I+ + Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163 >gi|253701407|ref|YP_003022596.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] gi|251776257|gb|ACT18838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 152 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ +I ++ QS++I +L+ Q + W+ + A++ V LD+ R+ I TFY F Sbjct: 8 IDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKAF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G R + VC T C +RG +++++ + I K +++ S E V C G C Sbjct: 66 SQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDAELKFSLETVNCLGCCA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P+++I + + ++ P + E++ + Sbjct: 125 LGPVMVIDGEYHGNVAPAQSAEVLKNY 151 >gi|238788651|ref|ZP_04632443.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC 33641] gi|238723246|gb|EEQ14894.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Query: 3 VRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58 V LA +P++ F S E + Y +R +A I L Q++ GWV Sbjct: 16 VANLAVNAAEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPD 73 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 74 GAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISK 132 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 133 KLSIEPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSHLKPEDIEKLLEQY 186 >gi|238794604|ref|ZP_04638211.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC 29909] gi|238726090|gb|EEQ17637.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC 29909] Length = 187 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + Y +R +A I L Q+Q GWV AI +A +L + V Sbjct: 33 FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPASDV 90 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K+ +P DG + Sbjct: 91 EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQTTFDGRFTL 149 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L PE +E++++ + Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|255527513|ref|ZP_05394381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|255508783|gb|EET85155.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] Length = 160 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 +VI +YP Q + +L Q + ++ R ++E +A L+ R+ +ATFY L Sbjct: 15 DVIQKYPKE--QRYTLAILQDIQRKYRYIPRESLEALAEYLETPVSRLYGMATFYKALSL 72 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 +P G + VC T C + G +++ + +P D S V C G C A Sbjct: 73 TPKGENI-ITVCDGTACHVSGSMVVMDELEKILGIRPGGTTEDRKFSINTVNCIGCCAIA 131 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++MI + Y +LTP+ ++EI+D + Sbjct: 132 PVMMINEKFYGNLTPKMIKEILDEY 156 >gi|116749389|ref|YP_846076.1| NADH dehydrogenase subunit E [Syntrophobacter fumaroxidans MPOB] gi|116698453|gb|ABK17641.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 163 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 I ++ Q+ G+++ A+E A IL M + + E+ATFY SPVG R + VC + Sbjct: 25 IDVMFELQDHYGYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVG-RYVIHVCDSA 83 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162 C + G +++I+ ++ + DG + V C G C AP +MI ++ Y LT Sbjct: 84 VCWMEGYQRIIDYLCQRLKLTVGGTSPDGLFTLLPVCCIGYCDRAPAMMINRNVYGRLTR 143 Query: 163 ERLEEIID 170 E+++ I+D Sbjct: 144 EKIDRILD 151 >gi|300723693|ref|YP_003713000.1| NADH dehydrogenase I subunit E [Xenorhabdus nematophila ATCC 19061] gi|297630217|emb|CBJ90868.1| NADH dehydrogenase I chain E [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F S E + + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 24 PDEFVLSAEERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPA 81 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFY+Q PVG R ++ C + C + G + + + ++ +P +DG Sbjct: 82 SDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQGVQAAIESHLNIRPGQTTADGR 140 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ + PE +E++++ + Sbjct: 141 FTLLPTCCLGNCDKGPAMMIDEDTHCYVRPEEIEKLLEQY 180 >gi|170721054|ref|YP_001748742.1| NADH dehydrogenase subunit E [Pseudomonas putida W619] gi|169759057|gb|ACA72373.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida W619] gi|313498028|gb|ADR59394.1| NADH dehydrogenase subunit E [Pseudomonas putida BIRD-1] Length = 165 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|288817440|ref|YP_003431787.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6] gi|288786839|dbj|BAI68586.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6] gi|308751047|gb|ADO44530.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobacter thermophilus TK-6] Length = 154 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EES + + + Y P R + A++ L Q G + A+E VA ILD+ V + Sbjct: 3 EESLLEKLKQHAEYFPKR-EQAILLCLHEVQNHYGHIPEFALEEVAKILDLPLNHVENVV 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F R ++VC + C L G +KLI+ R ++ DG V+ Sbjct: 62 SFYDMFDRGE-PARHRIRVCVSVVCHLMGKDKLIKALRELLNIDFGQVTKDGRFKLLAVQ 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP M+ +D Y+ E+L E++ ++ Sbjct: 121 CLGACSEAPFFMVDEDAYKFENKEKLNEVLSRYA 154 >gi|71892263|ref|YP_277997.1| NADH dehydrogenase subunit E [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796369|gb|AAZ41120.1| NADH dehydrogenase I chain E [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 173 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S+E + E + Y R S I L Q+ GWV AI ++A IL ++ + Sbjct: 19 FQLSQEECNAIQEECTHYEDMRAVS--IEALKIIQKNHGWVPDEAIILIAKILCISAADL 76 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY Q PVG R ++ C + C L GCEK+ ++ SD + Sbjct: 77 EGVATFYNQIFRQPVG-RHIIRYCDSAVCYLVGCEKIKNTLTYLLNITVGSTTSDNRFTL 135 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C AP++MI KD Y + PE + +++ + Sbjct: 136 LPTCCLGICDKAPVIMIDKDIYPYIVPETITKLLGQY 172 >gi|15616777|ref|NP_239989.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681532|ref|YP_002467917.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682088|ref|YP_002468472.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471213|ref|ZP_05635212.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133961|sp|P57255|NUOE_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain E [imported] - Buchnera sp. (strain APS) gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621821|gb|ACL29977.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624375|gb|ACL30530.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085899|gb|ADP65981.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086472|gb|ADP66553.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087053|gb|ADP67133.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 162 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 I L Q++ GWVS AI +A IL + V +ATFY+Q PVG R ++ C + Sbjct: 33 IEALKIVQKKRGWVSDQAIYAIAEILHINPSDVEGVATFYSQIFRKPVG-RNIIRYCDSV 91 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162 C L G +++ N + K D + V C G C P +MI +DTY LTP Sbjct: 92 VCFLTGYKRIQIALENYLKIKIGETTKDDRFTLLPVCCLGNCDKGPTIMINEDTYSVLTP 151 Query: 163 ERLEEIIDAF 172 E + +++++ Sbjct: 152 ESIPSLLESY 161 >gi|311697063|gb|ADP99936.1| ATP synthase subunit E [marine bacterium HP15] Length = 158 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 1/142 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q+ G++ +++ ++A L ++ V + +FY F+ PVG R V VC Sbjct: 14 GALLPILHSVQDHFGYIPESSVPIIAEKLQLSRAEVHGVISFYHHFRSHPVGCRV-VHVC 72 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G L E + ++ +SD + E V C G C AP + + D + Sbjct: 73 RAEACQAMGGRTLEEHIKARLGVDYHGTSSDNEFTLEPVYCLGNCACAPSIRVNDDIHGR 132 Query: 160 LTPERLEEIIDAFSTGQGDTIR 181 +TP++ + ++D +T D ++ Sbjct: 133 VTPQKFDRLVDELTTTALDFVQ 154 >gi|152985085|ref|YP_001347931.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PA7] gi|150960243|gb|ABR82268.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa PA7] Length = 166 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct] Length = 167 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKRRGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|330503268|ref|YP_004380137.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01] gi|328917554|gb|AEB58385.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01] Length = 164 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q+Q GWV A + + IL + Sbjct: 5 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAADAIGEILGI 62 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ SD Sbjct: 63 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVVSEMQKQLGIGLGQTTSD 121 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 122 ERFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEDY 163 >gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] gi|85723788|gb|ABC78731.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] Length = 150 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++I ++ + SA+I +L+ QE+ W+ + A+E V+ L + V ATFY F Sbjct: 6 IDQIIEKHQGA--SSALIQILLDIQEENHWLPKEALERVSEKLQIPITTVRHAATFYKVF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G R V VC T C +RG ++++ + KP + D S E V C G C Sbjct: 64 STVPKG-RHQVHVCLGTACHVRGATRVLDTVQESTGIKPGETDLDLKFSLETVNCLGCCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P++ I Y TP + +++ + Sbjct: 123 LGPVMEIDGKVYGKATPSKTIDVLKKY 149 >gi|330508799|ref|YP_004385227.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta concilii GP-6] gi|328929607|gb|AEB69409.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta concilii GP-6] Length = 153 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I LL+ Q + W+S+ A++ ++ L + R+ IA+FY L P+G + + V Sbjct: 20 EGSLIQLLLDLQSEFNWISKDALQEISERLKIPPSRIYRIASFYEAISLKPIG-KHKISV 78 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +++ +K+ K D + + V C G C P++++ D + Sbjct: 79 CMGTACQVRGSGMILDRTESKLKIKQGGTTPDMRFTLKRVNCLGCCAIGPVMVVDDDYHG 138 Query: 159 DLTPERLEEIIDAF 172 LT +R+E II + Sbjct: 139 RLTSDRVERIIKKY 152 >gi|104782524|ref|YP_609022.1| NADH dehydrogenase subunit E [Pseudomonas entomophila L48] gi|95111511|emb|CAK16231.1| NADH dehydrogenase I chain E [Pseudomonas entomophila L48] Length = 165 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164 >gi|70731259|ref|YP_261000.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf-5] gi|68345558|gb|AAY93164.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas fluorescens Pf-5] Length = 165 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAVYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164 >gi|268317704|ref|YP_003291423.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM 4252] gi|262335238|gb|ACY49035.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM 4252] Length = 224 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+EE + +Y AV+ L AQE+ G++ +++VA+ L + Y +V Sbjct: 28 FTEEEKAKIARFKEQY--LEPAGAVMKTLWLAQEKFGFLPPEVLQLVADELGIPYAQVYG 85 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYTQ+ G + VC C + G ++ K+ DG + +E Sbjct: 86 VATFYTQYYKERKGKYV-LDVCTCFTCQVCGGYDILHYLEEKLGIHKGETTPDGLFTLQE 144 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 VEC GAC +AP++ + Y +LTPE+++++++ G+ Sbjct: 145 VECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGK 184 >gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51] gi|89336165|dbj|BAE85760.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51] Length = 160 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + A+IP+L AQ G++ I+ ++ L + +V + TFY QF+L+P+G R + Sbjct: 25 REKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFYAQFRLTPMG-RNVI 83 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 VC T C +RG K++E K DG + E V C GAC AP++ I + Sbjct: 84 SVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIGACGLAPVMSINGNV 143 Query: 157 YEDLTPERLEEIIDAF 172 + L +++ I+ + Sbjct: 144 HGRLNADQIPGILAEY 159 >gi|116748291|ref|YP_844978.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116697355|gb|ABK16543.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 162 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 35 PSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93 P R Q +++I +L +AQE G++ + VA L ++ + + TFY F L P G R Sbjct: 23 PYRGQPNSLIQVLAKAQEYIGYLPKWVQVQVAEGLGLSLQEIYGVTTFYAFFSLIPRG-R 81 Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + VC T C ++G + +++ R+ I KP D + E V C GAC AP V++ Sbjct: 82 HKLSVCAGTACYVKGTKNVLKGVRDAIGIKPGQTTPDSRFTMEIVRCIGACGLAPAVIVN 141 Query: 153 GKDTYEDLTPERLEEIIDAF 172 GKD + L E++ EI+ + Sbjct: 142 GKDVHGRLEAEQIPEILSLY 161 >gi|270297047|ref|ZP_06203246.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273034|gb|EFA18897.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 158 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A L + RV + TFYT F + P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRIIAAQLGIPVSRVYGVVTFYTFFTMLPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 P +++I++ Sbjct: 147 PIDVKKILE 155 >gi|238897508|ref|YP_002923187.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465265|gb|ACQ67039.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 174 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + E Y +R +A I L Q++ GWV AI +A +L + V Sbjct: 20 FVLSSEERDAIEEEKHHYEDAR--AASIEALKIVQKKRGWVPDEAIHAIAEVLGIPASDV 77 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G +K+ V K+ +P DG + Sbjct: 78 EGVATFYSQIFRKPVG-RHVIRYCDSVVCYITGYQKIQAVLEEKLGIQPGQTTKDGRFTL 136 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L E ++ +++ + Sbjct: 137 LPTCCLGNCDKGPTMMIDDDTHSHLQIENIDTLLEQY 173 >gi|169824853|ref|YP_001692464.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|302379620|ref|ZP_07268105.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna ACS-171-V-Col3] gi|303234495|ref|ZP_07321132.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna BVS033A4] gi|167831658|dbj|BAG08574.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|302312527|gb|EFK94523.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna ACS-171-V-Col3] gi|302494329|gb|EFL54098.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna BVS033A4] Length = 161 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L AQ++ G++ + I ++ ILD+ + + TFY QF L P G + +QVC Sbjct: 31 LMPVLQHAQDEFGYLPKEIITTISKILDIPLSEIYGVITFYAQFSLIPKG-KYDIQVCEG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +++ E + + D S C G C AP+++I D Y + Sbjct: 90 TACYVKGAQRVSEKLQEILKIPAGSTTEDQKFSITPCRCVGLCALAPVIVINGDVYGKVA 149 Query: 162 PERLEEIIDAFS 173 LE I+ ++ Sbjct: 150 VNELESIVSKYN 161 >gi|307266698|ref|ZP_07548226.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|326391449|ref|ZP_08212985.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus JW 200] gi|306918300|gb|EFN48546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|325992528|gb|EGD50984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I ++ AQE G++ ++ +++ + IATFY++F L P G + + +C Sbjct: 28 GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG ++ + K+ + DG S E C GAC AP++MI + + Sbjct: 87 MGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146 Query: 160 LTPERLEEIIDAF 172 LTP+ ++EI+ F Sbjct: 147 LTPDDVDEILSKF 159 >gi|239905423|ref|YP_002952162.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795287|dbj|BAH74276.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 168 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 4/145 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ RY R + ++P+L QE+ ++ + + VA L + V +ATFY F L Sbjct: 21 ILDRY--DRHPARLVPILQALQEEYRYLPQEVLSYVATSLRIPEANVFGVATFYAHFALE 78 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNA 147 P G + V++C T C ++ ++E R ++ + D + E V C GAC A Sbjct: 79 PKG-KYVVRLCDGTACHVKQSIPILEALRARLDLTEAKATTPDMLFTVETVACLGACGLA 137 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P+++I +D Y +TPER ++IDA Sbjct: 138 PVLVINEDVYGQMTPERAVDLIDAI 162 >gi|219667453|ref|YP_002457888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium hafniense DCB-2] gi|219537713|gb|ACL19452.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium hafniense DCB-2] Length = 160 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + A+IP+L AQ G++ I+ ++ L + +V + TFY QF+L+P+G R + Sbjct: 25 REKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFYAQFRLTPMG-RNVI 83 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 VC T C +RG K++E K DG + E V C GAC AP++ I + Sbjct: 84 SVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIGACGLAPVMSINGNV 143 Query: 157 YEDLTPERLEEIIDAF 172 + L +++ I+ + Sbjct: 144 HGRLNADQIPGILAEY 159 >gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus] Length = 124 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 52/89 (58%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 35 VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVG 91 VA ILD++ +RV E+ATFYT F PVG Sbjct: 95 KVAEILDVSPMRVHEVATFYTMFNRQPVG 123 >gi|320160661|ref|YP_004173885.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1] gi|319994514|dbj|BAJ63285.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1] Length = 168 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +A+I L QE G+VSR A+ VA L++ +V +ATFY F L+PVG +C Sbjct: 32 TALIETLHSIQETFGFVSREALNYVAESLNIPPAKVFGVATFYNLFNLNPVGEHV-FSLC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++++ + + +P DG L++ C GAC AP++++ + Sbjct: 91 TGTACYVKGAGEIVDFMKEEFGLEPGQTTPDGKLTFMVARCVGACGLAPVMILDGEVVGK 150 Query: 160 LTPERLEEII 169 L E ++ I Sbjct: 151 LGVEEMKAKI 160 >gi|330830048|ref|YP_004393000.1| NADH dehydrogenase I subunit E [Aeromonas veronii B565] gi|328805184|gb|AEB50383.1| NADH dehydrogenase I, E subunit [Aeromonas veronii B565] Length = 180 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A L + V +ATFY+Q PVG R ++V Sbjct: 47 RAASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 105 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G E+L+ + ++ P DG + V C G C P +MI DTY Sbjct: 106 CDSMVCYINGHEELMAGLKEVMNLGPGQTTPDGRFTLLPVCCLGNCDKGPAIMIDDDTYG 165 Query: 159 DLTPERLEEIIDAF 172 L P L + ++A+ Sbjct: 166 GLDPVTLLKTLEAY 179 >gi|189485527|ref|YP_001956468.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287486|dbj|BAG14007.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 157 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +IP+L QE+ ++ + + +A L+ + V +ATF++ F L G R +++ Sbjct: 22 KSKLIPILQAVQEEYKYLPKEILVFIALSLNTSPAGVYGVATFFSHFTLKHKG-RHIIKI 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C C ++ LI +NK+ K + D + E V C GAC AP+ +I +D Y Sbjct: 81 CDGIACHVKKSNSLINALKNKLGLKEAEYSTKDVFFTIETVSCLGACGLAPVFLIDEDIY 140 Query: 158 EDLTPERLEEIID 170 +TP++ E+ID Sbjct: 141 GQMTPDKAVELID 153 >gi|313673508|ref|YP_004051619.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component subunit hoxe [Calditerrivibrio nitroreducens DSM 19672] gi|312940264|gb|ADR19456.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Calditerrivibrio nitroreducens DSM 19672] Length = 164 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 ++I +L QE G++ A++ V+ L++ Y R +ATFY F L P G V VC Sbjct: 30 SLIEVLHAVQEYFGYIDEDALKFVSESLNIPYSRAYSVATFYHYFTLKPQGEHICV-VCT 88 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G +L+ +N DG +S C GAC AP+V++ ++ Sbjct: 89 GTACYIKGANQLLAHLKNHHDLSDGDTTKDGKVSLLTARCVGACSLAPVVVVDNKILGEI 148 Query: 161 TPERLEEII 169 E+L+++I Sbjct: 149 NSEKLDDVI 157 >gi|302389111|ref|YP_003824932.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermosediminibacter oceani DSM 16646] gi|302199739|gb|ADL07309.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermosediminibacter oceani DSM 16646] Length = 170 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E+I + R +I +L Q + ++ + + +A ++++ +V +ATFY F Sbjct: 14 VDEIIEAH--GRNPVNIISILQEVQNEYRYLPQDVLNYIATAMNISPSKVYGVATFYENF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144 L P G +++C T C ++ L+ K+ K R ++ L + E V C GAC Sbjct: 72 SLEPKGKYV-IRICDGTACHVKNSTALLNALTKKLGLKEGQRTTEDLLFTLETVSCLGAC 130 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF---STGQGDTIR 181 AP++++ ++ + +TPE+ EEIID GQ D R Sbjct: 131 GLAPVMVVNEEVHGKVTPEKAEEIIDEIINKERGQNDKER 170 >gi|148262415|ref|YP_001229121.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] gi|146395915|gb|ABQ24548.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] Length = 157 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+E A +L ++ ++V E+ATFY PVG R + Sbjct: 21 REAAVDVMKELQRHYGWLTDEAVEEAAALLGLSTLQVEELATFYEMIYRRPVGRRV-IHA 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E ++ + +P DG + C G C + P +MIG Y Sbjct: 80 CDSISCWAVGGEHMMAQLARHLGIEPGETTKDGMFTLLPCCCLGNCGDGPAMMIGDTLYG 139 Query: 159 DLTPERLEEII 169 LT E+LEEI+ Sbjct: 140 RLTAEKLEEIL 150 >gi|220931475|ref|YP_002508383.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix orenii H 168] gi|219992785|gb|ACL69388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix orenii H 168] Length = 162 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+I +Y +IP+L AQE G++ +A L + +V + +FY+ F Sbjct: 17 LDEIILKYKDK--PGPLIPVLHEAQELYGYLPEEVQSYIAEGLGVPVSKVSGVVSFYSFF 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + VC T C ++G E+++ + ++ + + DG + + C GAC Sbjct: 75 TTKPKGEHT-INVCMGTACYVKGAEEILNRLKEELGIEEGETSEDGKFTMVGMRCLGACS 133 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V I Y +TPE++ EII+++ Sbjct: 134 LAPVVTIDDKVYGKVTPEKMMEIIESY 160 >gi|222100043|ref|YP_002534611.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359] gi|221572433|gb|ACM23245.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359] Length = 164 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ ++ R +I +L+ QE ++ I V+ + + ++ +ATFY QF Sbjct: 11 VEEILRKHGYKR--ENLIKILLEIQELYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G A + VC T C + G ++++ + P + D S ++V C GAC Sbjct: 69 SLKPKGKYA-IMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP+++I + Y +LT E+++EI+ Sbjct: 128 LAPVMVINDEVYGNLTAEKVKEIL 151 >gi|281412805|ref|YP_003346884.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [Thermotoga maritima MSB8] gi|281373908|gb|ADA67470.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] Length = 161 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ +Y R +I +L+ QE ++ I V+ + + ++ +ATFY QF Sbjct: 8 VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + + VC T C + G ++++ + P + D S ++V C GAC Sbjct: 66 SLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP+++I + Y +LT ++++EI+ Sbjct: 125 LAPVMVINGEVYGNLTADKVKEIL 148 >gi|71065154|ref|YP_263881.1| NADH dehydrogenase subunit E [Psychrobacter arcticus 273-4] gi|71038139|gb|AAZ18447.1| NADH dehydrogenase I, E subunit [Psychrobacter arcticus 273-4] Length = 169 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E ++E + YP R +A + L Q++ GWV A + +ANIL++ + Sbjct: 17 LTAEEIAAIHEFMHHYPHPR--AASLDALKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + +C + C L G E L + ++ +D + Sbjct: 75 VATFFNRIYRQPVG-RHVILICDSVACYLTGYEALAAELKAQLGIDYGQTTADKRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P V+I +DTY + PE + ++++ ++ Sbjct: 134 ICCLGNCDKGPAVLINEDTYGPVQPEEVAQLLELYA 169 >gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8] gi|4981988|gb|AAD36494.1|AE001794_10 Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8] Length = 164 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ +Y R +I +L+ QE ++ I V+ + + ++ +ATFY QF Sbjct: 11 VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + + VC T C + G ++++ + P + D S ++V C GAC Sbjct: 69 SLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP+++I + Y +LT ++++EI+ Sbjct: 128 LAPVMVINGEVYGNLTADKVKEIL 151 >gi|322417696|ref|YP_004196919.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320124083|gb|ADW11643.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 160 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A++ A +L ++ ++V E+ATFY PVG R + V Sbjct: 21 REAAVDVMKELQAHYGWLTDEAVQEAAALLGLSPLQVEELATFYEMIYRRPVG-RKVIHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C C+ LI ++++ P +DG + C G C ++P + +G Y Sbjct: 80 CDSISCWCADCDGLIRHLKDRLGVGPGETTADGMFTLIPCCCMGMCGDSPAMSVGGTPYG 139 Query: 159 DLTPERLEEIID 170 LTPE +E+++ Sbjct: 140 RLTPELADEVLE 151 >gi|224824819|ref|ZP_03697926.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002] gi|224603312|gb|EEG09488.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002] Length = 166 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68 S +S ++ +++YP + +SAV+ L A E+ +++ IE VAN L Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALEERRSTGETPEARCLNQEVIEFVANYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++ + E+ATFY + + PVG + + VC PC L G E K+ + Sbjct: 62 EIPPVAAYEVATFYNMYDMKPVG-KYKITVCTNLPCALSGGVNAAEYISGKLGIAIGETS 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEE 167 +DG + E EC GAC +AP++++ + +TPE +++ Sbjct: 121 TDGMYTLLEGECMGACGDAPVLLVNNHSMCSFMTPEAIDK 160 >gi|296132536|ref|YP_003639783.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR] gi|296031114|gb|ADG81882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens JR] Length = 179 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q G+V + A++ ++ LD+ + + + TFY QF+L+P G + ++VC Sbjct: 31 LLPILQEVQHNLGYVPKQAMQQISEALDIPEVEIYGVTTFYNQFRLNPPG-KHQIKVCMG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G +++ +++ K D S E V C G C AP+V+I + + Sbjct: 90 TACHMTGGHIIMDSFARRLNIKEGETTPDREFSLERVACVGCCALAPVVVIDEKIEGKVR 149 Query: 162 PERLEEIIDAF 172 P R++ I+ F Sbjct: 150 PTRVDGILLGF 160 >gi|254282424|ref|ZP_04957392.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B] gi|219678627|gb|EED34976.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B] Length = 167 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 + P R A+ L + Q GWVS ++ +A L+M+ + +ATFY PVG Sbjct: 26 HVPYRSAVAIDALKI-VQAHRGWVSDESLRAIARHLEMSAEELDGVATFYNLIFRQPVGD 84 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + +C + C ++GC+K+ + +D + V C GAC AP++M+ Sbjct: 85 RV-ILLCNSVTCWIKGCDKVQAAITENLGIGLGETTADNAFTLLPVTCLGACDRAPVMMV 143 Query: 153 GKDTYEDLTPERLEEII 169 G D ++DL P +E+ + Sbjct: 144 GDDLHQDLDPAEIEKAL 160 >gi|310828876|ref|YP_003961233.1| NADH dehydrogenase I [Eubacterium limosum KIST612] gi|308740610|gb|ADO38270.1| NADH dehydrogenase I [Eubacterium limosum KIST612] Length = 172 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I +L +AQE G++S + ++ D+ ++ +ATFY QF+++PVG + + +C Sbjct: 36 GSLITILQKAQETYGYLSPDLMLYISRETDIPVAKIYGVATFYAQFRMNPVG-KHLIMLC 94 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C + G + E + K DG + E V C G C +P++MI +TY Sbjct: 95 QGTACHVNGSSMIEEAVVEHLGIKEGETTEDGLFTLENVACLGCCSLSPVMMIDGETYGQ 154 Query: 160 LTPERLEEII 169 LT +++ I+ Sbjct: 155 LTKDKVVNIL 164 >gi|188585873|ref|YP_001917418.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350560|gb|ACB84830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 158 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A IP+L Q++ G++ + + V ++ + + I TFY+QF+L PVG + V Sbjct: 26 KGAAIPILQDIQKELGYIPKEVLPKVTSLTKIPESDLYSIVTFYSQFRLQPVGDNL-IHV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C L G E++ ++ + DG + E+V C G C AP++ I +T+ Sbjct: 85 CHGTACHLAGAEEITNALVRELEIGDEGTSPDGKFTVEKVACLGCCSLAPVMTINGETHG 144 Query: 159 DLTPERLEEI 168 LTP++ +I Sbjct: 145 RLTPDKAVKI 154 >gi|238751245|ref|ZP_04612739.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380] gi|238710519|gb|EEQ02743.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380] Length = 187 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + Y +R +A I L Q++ GWV AI +A++L + V Sbjct: 33 FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASDV 90 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K+ +P DG + Sbjct: 91 EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L PE +E++++ + Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|134301121|ref|YP_001114617.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134053821|gb|ABO51792.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] Length = 177 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+I +L +AQ G++ R +A L + V + +FY+ F P G + V Sbjct: 36 KGALIEILHKAQHIFGYLPRDVQLFIARKLGIPGAEVYGVVSFYSYFTTKPSGKHT-ISV 94 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K++E + ++ + DG + ++V C GAC AP+VM+ Y Sbjct: 95 CMGTACFVRGADKIVEKFKERLGIESNETTEDGLFTIKDVRCIGACGLAPVVMVDDKVYG 154 Query: 159 DLTPERLEEIIDAF 172 + E +++II+ + Sbjct: 155 RVKVEDVDDIINIY 168 >gi|157364375|ref|YP_001471142.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] gi|157314979|gb|ABV34078.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] Length = 164 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQE G++S +A +L + +V + TFY F P G + V+VC Sbjct: 29 LISVLQKAQELFGYLSPEVQNHIAEMLKIPVSQVYGVVTFYNFFSTRPKG-KVQVKVCLG 87 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDL 160 T C ++G +++ E ++ DG S V C GAC AP+V++G KD Y + Sbjct: 88 TACYVKGADRIFERFLEELATSAEEPTKDGQFSVHAVRCLGACSMAPVVLVGEKDFYGRV 147 Query: 161 TPERLEEIIDAF 172 P+ + II+ + Sbjct: 148 KPDMVPRIIEKY 159 >gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus aciditrophicus SB] gi|85721023|gb|ABC75966.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus aciditrophicus SB] Length = 173 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E+IS+Y + SA + +L QE+ ++ + A+ +V++ L + R+ EIATFY F Sbjct: 23 IREIISKYDGEK--SAAVAVLQDLQEEFRYLPKEALTIVSDELQVPLSRIYEIATFYNVF 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + ++VC T C ++G L+ ++ D + EEV C G C Sbjct: 81 SLKPRG-KYLIEVCAGTACHVQGGFNLMNRLERNLNISCGETTEDAMFTLEEVRCLGCCS 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V I + + LT + + I+ + Sbjct: 140 LAPVVRIDGNIHPYLTQDEIPGILKNY 166 >gi|24372604|ref|NP_716646.1| NADH dehydrogenase subunit E [Shewanella oneidensis MR-1] gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subunit [Shewanella oneidensis MR-1] Length = 180 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S F S+ + Y R +A I L Q+ GWV AI +A L + Sbjct: 24 SDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIAAELGIPAS 81 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++VC + C + G E+L+ + ++ P DG Sbjct: 82 DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLMAGLKEVMNLAPGQTTPDGRF 140 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C P +MI DTY L P L + ++A+ Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPITLLKTLEAY 179 >gi|332296986|ref|YP_004438908.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema brennaborense DSM 12168] gi|332180089|gb|AEE15777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema brennaborense DSM 12168] Length = 160 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L + QE++G++S+ A + VA + RV + TFY F+ G + V VC Sbjct: 27 LIMILHKVQEEQGFISKEAAQAVAERTNSPLARVYGVMTFYHFFKTQKPG-KNKVSVCLG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C L+G + LI+ R+ + K ++ DG S E V C G C AP++ + D Y L Sbjct: 86 TACYLKGGQDLIDEARSILGLKAEDISTEDGLFSVEPVRCIGCCGLAPVLSVNGDVYGKL 145 Query: 161 TPERLEEIIDAF 172 T ++ I+D + Sbjct: 146 TKNQIAGILDKY 157 >gi|148379809|ref|YP_001254350.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153934211|ref|YP_001384107.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936196|ref|YP_001387647.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289293|emb|CAL83389.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152930255|gb|ABS35755.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A str. ATCC 19397] gi|152932110|gb|ABS37609.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A str. Hall] gi|322806086|emb|CBZ03653.1| NAD-reducing hydrogenase subunit HoxE [Clostridium botulinum H04402 065] Length = 159 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD++ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDISVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ NK++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDVLSEFENKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T ++++++ + Sbjct: 141 VYGHFTKNEVDKVLEEYG 158 >gi|113866667|ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] gi|113525443|emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ +G++ AA+ V+A L+++ V + TFY F+ P G R VQVC Sbjct: 30 ALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVCR 88 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L E + + +DG ++ E V C G C P VM+G+ + + Sbjct: 89 AEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQCACGPAVMVGEQLHGYV 148 Query: 161 TPERLEEII 169 R + ++ Sbjct: 149 DARRFDALV 157 >gi|266619024|ref|ZP_06111959.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479] gi|288869445|gb|EFD01744.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479] Length = 164 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI-- 73 FS ++E + EVIS ++ A++P++ +AQ+ G++ IEV I D I Sbjct: 10 FSGTKEQEAALKEVISELKGTK--GALMPIMQKAQDIYGYLP---IEVQTMISDETGIPL 64 Query: 74 -RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 ++ +ATFY QF L P G + V VC T C ++G + + + DG Sbjct: 65 EKIYGVATFYAQFALQPKG-KYQVSVCLGTACYVKGSGDIYDKLVELLGITNGECTPDGK 123 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + C GAC AP++MI + Y LTP+ + I+ + Sbjct: 124 FSLDSCRCVGACGLAPVMMINGEVYGRLTPDDVPGILAKY 163 >gi|312878992|ref|ZP_07738792.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Aminomonas paucivorans DSM 12260] gi|310782283|gb|EFQ22681.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Aminomonas paucivorans DSM 12260] Length = 172 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQ G++ VA LD+ +V + TFY+ F + P G + V VC Sbjct: 27 LITVLHKAQGIFGYLPEEVQAFVAKKLDIPLAKVYGVVTFYSFFTMVPKG-KVVVSVCMG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E+++ + K ++DG S + + C GAC AP+V+I Y LT Sbjct: 86 TACYVRGAEEVLAELEKVLGIKAGQVSADGHFSLDTLRCVGACGLAPVVIINGKVYGRLT 145 Query: 162 PERLEEIIDAF 172 P ++ II + Sbjct: 146 PAQIPGIIAPY 156 >gi|170720891|ref|YP_001748579.1| formate dehydrogenase subunit gamma [Pseudomonas putida W619] gi|169758894|gb|ACA72210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida W619] Length = 160 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++SR+ + A++P+L QE G++ AA+ +A+ L+++ V + +FY F Sbjct: 11 IQSILSRHQDT--PGALLPILHAVQESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG +S V C GAC Sbjct: 69 RTAP-PARHTLRLCRAESCQSRGSEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 +P + + + LTPERL +++ Sbjct: 128 CSPALELDGQVHARLTPERLRSLVN 152 >gi|92115244|ref|YP_575172.1| NADH-quinone oxidoreductase, E subunit [Chromohalobacter salexigens DSM 3043] gi|91798334|gb|ABE60473.1| NADH dehydrogenase subunit E [Chromohalobacter salexigens DSM 3043] Length = 171 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F +E + YP Q+A I L Q + GWV AAI+ +A L ++ Sbjct: 16 AFVLHDEDRAAIAHERDHYP--HPQAASIEALKIVQRRHGWVPDAAIDAIARELGVSPAS 73 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+ PVG R + +C ++ C L E L + + DG + Sbjct: 74 VEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTDYEALRDAFFEHLGIGFGQTTPDGRFT 132 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC P +MIG DT+ + PE + +++A++ Sbjct: 133 LLPVCCLGACDRGPALMIGDDTHGPVAPEEIPTLLEAYA 171 >gi|303238582|ref|ZP_07325116.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302593980|gb|EFL63694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 181 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P F +E + I +R A+I +L +AQE G++ R VA L + Sbjct: 11 KPVEREFPKEKYDELGAFIDNMETTR--GALIEILHKAQEIFGYLPRDVQLYVARKLGIP 68 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V + +FY+ F P G + + VC T C +RG +K++E ++++ + D Sbjct: 69 GAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGSDKILEKFKDRLGIESNETTEDS 127 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + ++V C GAC AP+VM+ Y + E ++ II+ + Sbjct: 128 LFTIKDVRCIGACGLAPVVMVDGKVYGRVKEEDVDNIINEY 168 >gi|168700383|ref|ZP_02732660.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246] Length = 160 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + SE+ + I +YP R Q+ +P L ++ VS AI +A IL++ V Sbjct: 3 ALSEDMKNRIRAFIPKYP--RKQAVTLPALHLVHDELRTVSNEAIVEIAEILELHPSEVH 60 Query: 77 EIATFYTQF--QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + TFY F + +GT + VC CMLRG +LIE C +K+ +DG ++ Sbjct: 61 DTMTFYAFFKGEGEKLGT-TRLWVCRGLACMLRGAYELIEHCEHKLGVHCGQTTADGKVT 119 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 E EC GAC AP +I ++TPE+ +++I Sbjct: 120 LEFAECIGACDGAPACLIEDVHAMNVTPEKADQLI 154 >gi|167772593|ref|ZP_02444646.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM 17241] gi|167665071|gb|EDS09201.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM 17241] Length = 164 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ + E + EVI+ + + A++P+L AQE G++ +++++ LD+ + Sbjct: 10 FTGTAEQEAKLREVIAAHKGQK--GALMPVLQGAQEIYGYLPIEVQKMISDGLDIPLEEI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L+P G + + VC T C ++G + + K+ + DG S Sbjct: 68 YGVATFYSQFTLNPKG-QYKISVCLGTACYVKGAGDIFNRLQEKLGIESGMCTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++ I + Y LT + ++ I+ + Sbjct: 127 DACRCIGACGLAPVMTINDEVYGRLTVDDVDTILAKY 163 >gi|167750761|ref|ZP_02422888.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702] gi|167656196|gb|EDS00326.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702] gi|291557754|emb|CBL34871.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum V10Sc8a] Length = 166 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A++P+L +AQE G++ ++A + + +V ++TFY+QF L P G + + V Sbjct: 32 QGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKISV 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + K+ DG S + C GAC AP++ + D Y Sbjct: 91 CLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVYG 150 Query: 159 DLTPERLEEIIDAFS 173 LT + ++ I+ ++ Sbjct: 151 KLTVDEIDGILAKYT 165 >gi|239904884|ref|YP_002951622.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein [Desulfovibrio magneticus RS-1] gi|239794747|dbj|BAH73736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein [Desulfovibrio magneticus RS-1] Length = 171 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + Sbjct: 39 EGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKGKHP-ISI 97 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Y Sbjct: 98 CMGTACFVKGADKVVNAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKVYG 157 Query: 159 DLTPERLEEIIDAF 172 ++TP ++++I+ F Sbjct: 158 NVTPGQVKKILADF 171 >gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ +G++ AA+ V+A L+++ V + TFY F+ P G R VQVC Sbjct: 30 ALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVITFYHHFRQQPAG-RHVVQVCR 88 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L E + + +DG ++ E V C G C P VM+G+ + + Sbjct: 89 AEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQCACGPAVMVGEQLHGYV 148 Query: 161 TPERLEEII 169 R + ++ Sbjct: 149 DARRFDALV 157 >gi|222053344|ref|YP_002535706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221562633|gb|ACM18605.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 150 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S++I +L+ Q + W+ + +E V+ L++ ++ I TFY F L P G R V VC Sbjct: 18 SSLIQILIAIQSENHWLPKEVLERVSERLNVPMNQIQHITTFYKSFSLVPKG-RHEVHVC 76 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C +RG + +++ + KP + D S E V C G C P++++ D + + Sbjct: 77 MGTACHVRGAQGVLDTVEDVTGIKPGETDVDLKFSLETVNCIGCCALGPVMVVDGDYHGN 136 Query: 160 LTPERLEEIIDAF 172 L ++E+++ + Sbjct: 137 LAATQVEDVLKTY 149 >gi|309791452|ref|ZP_07685957.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris trichoides DG6] gi|308226488|gb|EFO80211.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris trichoides DG6] Length = 174 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L +AQE G++S + +A L + RV +ATFY F L+P GT +C Sbjct: 35 ALIEVLHKAQEIYGFLSPDLLVRIARSLHLPPSRVYGVATFYHFFSLAPQGTHT-CTICL 93 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +RG +L+ + H DG LS V C GAC AP V+I + + Sbjct: 94 GTACYVRGAAELMARAEHAAGIAAGHTTPDGHLSLASVRCIGACGIAPAVVIDGNVTGHM 153 Query: 161 TPERLEEIIDAF 172 TP+ + + A Sbjct: 154 TPDDIAAQVTAL 165 >gi|16330690|ref|NP_441418.1| bidirectional hydrogenase complex protein HoxE [Synechocystis sp. PCC 6803] gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 173 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA L + RV +ATFY F L P G V V Sbjct: 37 QDALIEILHKAQEIFGYLEEDVLLYVARGLKLPLSRVFGVATFYHLFSLKPSGKHTCV-V 95 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C T C ++G L++ ++H KP DG +S C GAC AP V+ Sbjct: 96 CLGTACYVKGAGDLLKTLDQEVHLKPGETTEDGQMSLVTARCIGACGIAPAVV 148 >gi|255524300|ref|ZP_05391258.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296185257|ref|ZP_06853667.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255511983|gb|EET88265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296050091|gb|EFG89515.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 160 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L AQ+ G++ +AN LD++ +V + TFY+ F + P G + + Sbjct: 25 EGSLINVLHEAQDMFGYLPEELQIFIANKLDISAAKVFGVVTFYSYFTIEPRGKHV-ISI 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G E ++E R +++ K DG + + + C GAC AP+V+I Y Sbjct: 84 CMGTACFVKGAENVLEEFRKELNIKDGFSTEDGLFTIDILRCVGACGLAPVVVIDGMVYG 143 Query: 159 DLTPERLEEIIDAFS 173 + E ++ I+ ++ Sbjct: 144 KVKVEDVKGILSQYT 158 >gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG [Herminiimonas arsenicoxydans] gi|133740484|emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas arsenicoxydans] Length = 159 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q G++ + +A+ L+++ V + T+Y F+ P G +Q+C Sbjct: 25 ALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVHGVITYYHFFRQHPAGKHV-IQICR 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RGCE L++ + + DG S E V C G C + P + I D Y + Sbjct: 84 AEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEVVYCLGQCASGPAIQIDDDLYARV 143 Query: 161 TPERLEEIIDA 171 + E+ +I A Sbjct: 144 SKEKFNNLIQA 154 >gi|153814129|ref|ZP_01966797.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756] gi|317499934|ref|ZP_07958170.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|331087843|ref|ZP_08336768.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848525|gb|EDK25443.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756] gi|316898651|gb|EFV20686.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|330409538|gb|EGG88979.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FS ++E + +VI + A++P+L +AQ+ G++ +++++ + ++ Sbjct: 10 FSGTKEQEEALMKVIHELKDEK--GALMPILQKAQDIYGYLPIEVQKMISDETGIPMEKI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF LSP G + + VC T C ++G + K+ DG S Sbjct: 68 YGVATFYSQFTLSPKG-KYRISVCLGTACYVKGSGDIYNALMEKLGIVGGECTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++MI + Y LT + L++I+ + Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDLDDILAKY 163 >gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5] gi|6647652|sp|O66842|NUOE_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5] Length = 160 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F EE + E I+ +P R A++ L Q G++ +++ +A++L++ Sbjct: 4 TEFEFPEELKTKLQEHINYFPKKR--QAILLCLHEIQNYYGYIPPESLKPLADMLELPLN 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + FY F + ++VC + C L G KL++ N + KP DG Sbjct: 62 HVEGVVAFYDMFDRED-KAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKF 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V+C GAC AP+ M+ D Y+ + +L EI+ ++ Sbjct: 121 KIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT 160 >gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candidatus Kuenenia stuttgartiensis] Length = 152 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A IP+L QE+ G++ ++ V ++ + +ATFY QF+L+P G R ++V Sbjct: 17 KEASIPILQSIQEEYGYLPLDVLDQVCEESEITKSHLYGVATFYAQFKLTPKG-RNAIKV 75 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + I ++++ DG S E V C G C AP++MI +D + Sbjct: 76 CKGTACHVKGADITIVAMKDQLGIDIDQTTEDGAFSMETVACLGCCSLAPVIMINEDVFG 135 Query: 159 DLTPERL 165 + ++ Sbjct: 136 GFSSAKV 142 >gi|296124093|ref|YP_003631871.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces limnophilus DSM 3776] gi|296016433|gb|ADG69672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces limnophilus DSM 3776] Length = 159 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL--SP 89 +YP R + +P L ++ VS AIE +A +L++ V + TFY F+ +P Sbjct: 18 KYPNKR--AVTLPALHLVHDELRHVSTGAIEEIAELLELHPSEVHDTMTFYQFFRTEENP 75 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + V VC + C LRG E+L+ K+H P DG ++ E EC G C AP Sbjct: 76 LG-KHRVWVCRSISCGLRGGEELLAHMCEKLHVTPGGTTEDGKITLEFAECLGVCDGAPC 134 Query: 150 VMIGKDTYEDLTPERLEEII 169 V++ +D ++T E +++I Sbjct: 135 VLVDEDCVHNVTHEMADKLI 154 >gi|238784997|ref|ZP_04628995.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC 43970] gi|238714113|gb|EEQ06127.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC 43970] Length = 187 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + Y +R +A I L Q+ GWV AI +A +L + V Sbjct: 33 FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKGRGWVPDGAIHAIAEVLGIPASDV 90 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K+ +P DG + Sbjct: 91 EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L PE +E++++ + Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|156741349|ref|YP_001431478.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus castenholzii DSM 13941] gi|156232677|gb|ABU57460.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 173 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L RAQE G++S + +AN L + RV +ATFY F L+P G + V VC Sbjct: 39 ALIEVLHRAQELFGYLSNDLLLYIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCL 97 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +RG ++ + + H DG LS E C GAC AP V+ Sbjct: 98 GTACYVRGAAAILAAAEQTLGIRAGHTTPDGRLSLETARCLGACGIAPTVVFDGAITGHQ 157 Query: 161 TPERLE 166 TPE+++ Sbjct: 158 TPEQVQ 163 >gi|313499697|gb|ADR61063.1| Formate dehydrogenase subunit gamma [Pseudomonas putida BIRD-1] Length = 160 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q + G++ A++ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPILHAVQHEMGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG E L R ++ ++DG++S V C GAC +P + + + L Sbjct: 83 AESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACACSPALELDGQVHARL 142 Query: 161 TPERLEEIID 170 TPERL ++++ Sbjct: 143 TPERLRDLVN 152 >gi|307297601|ref|ZP_07577407.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916861|gb|EFN47243.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 165 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 41 AVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I L Q+ G ++ A EV+ + R+ E+ TFYT F G + V+VC Sbjct: 27 VLINTLHAIQDHYGNFIPIEAAEVLKELTGTPLSRIYEVLTFYTMFSTHKRG-KYVVRVC 85 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + PC + G + +I+ +N + DG + EE C G C +P++MI + Y + Sbjct: 86 KSLPCHVTGGQAVIDSLKNTLEIGFGETTEDGLFTLEETSCLGLCGVSPVMMINDEAYGN 145 Query: 160 LTPERLEEII 169 LTP+R+ EII Sbjct: 146 LTPKRVSEII 155 >gi|290475914|ref|YP_003468809.1| NADH dehydrogenase I subunit E [Xenorhabdus bovienii SS-2004] gi|289175242|emb|CBJ82045.1| NADH dehydrogenase I chain E [Xenorhabdus bovienii SS-2004] Length = 181 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI VA +L + V +ATFY+Q PVG R ++ Sbjct: 48 RAASIEALKIVQKQRGWVPDGAIYAVAEVLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 106 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + ++ +P DG + C G C P +MI +DT+ Sbjct: 107 CDSVVCHITGYQDVQAAIEMHLNIRPGQTTEDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 166 Query: 159 DLTPERLEEIIDAF 172 + PE +E++++ + Sbjct: 167 YVKPEEIEKLLEQY 180 >gi|307131811|ref|YP_003883827.1| NADH:ubiquinone oxidoreductase subunit E [Dickeya dadantii 3937] gi|306529340|gb|ADM99270.1| NADH:ubiquinone oxidoreductase, chain E [Dickeya dadantii 3937] Length = 176 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI+ ++ +L + V +ATFY+Q PVG R ++ Sbjct: 43 RAASIEALKIVQKHRGWVPDGAIDAISEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 101 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ KP DG + C G C P +MI +DT+ Sbjct: 102 CDSVVCHITGYQGIQAALERKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 161 Query: 159 DLTPERLEEIIDAF 172 L P+ ++ +++ + Sbjct: 162 QLKPDDIDSLLEQY 175 >gi|291530734|emb|CBK96319.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum 70/3] Length = 143 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A++P+L +AQE G++ ++A + + +V ++TFY+QF L P G + + V Sbjct: 9 QGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKISV 67 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + K+ DG S + C GAC AP++ + D Y Sbjct: 68 CLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVYG 127 Query: 159 DLTPERLEEIIDAFS 173 LT + ++ I+ ++ Sbjct: 128 KLTVDEIDGILAKYT 142 >gi|225572063|ref|ZP_03780927.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM 10507] gi|225040498|gb|EEG50744.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM 10507] Length = 172 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 7/148 (4%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+ +Y ++ ++I +L + Q+ G++S AI ++ + ++ +ATFY QF+L Sbjct: 23 VLEKY--AKVPGSLITILQKTQDIYGYLSMDAINYISERTGIMPAKIYGVATFYAQFRLQ 80 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P+G + + +C T C + G + + E + + DG + V C G C AP Sbjct: 81 PIG-KYLIMLCKGTACHVNGADMIQEAVSEHLGIQDGETTEDGLFTLNAVACLGCCSLAP 139 Query: 149 MVMI----GKDTYEDLTPERLEEIIDAF 172 ++M+ G++T+ +LT + +I+D + Sbjct: 140 VMMVKTVDGEETFGNLTKSSVTKILDDY 167 >gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] gi|85723969|gb|ABC78912.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] Length = 150 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++I ++ + SA+I +L+ QE+ W+ + A++ V+ L + V ATFY F Sbjct: 6 IDQIIEKHHGA--SSALIQILLDIQEENHWLPKEALDRVSEKLQVPLTTVRHAATFYKVF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G R V VC T C +RG ++++ KP + D S E V C G C Sbjct: 64 STVPKG-RHQVHVCLGTACHVRGANRVLDTVEEMTGIKPGETDLDLKFSLETVNCLGCCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P++ I Y TP + +++ + Sbjct: 123 LGPVMEIDGKVYGKATPSKTIDVLKKY 149 >gi|27904649|ref|NP_777775.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372476|sp|Q89AU3|NUOE_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|27904046|gb|AAO26880.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 171 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F + + I + +I Y R S++I +L Q+ GW+S I +A IL ++ + Sbjct: 17 FKLTIQEKIEIFNIIKNYRTVR--SSLIEILKFVQKSYGWISNELITELACILKISKCDI 74 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 EIATFY+Q P+G R ++ C + C + GCEK+ ++ D + Sbjct: 75 EEIATFYSQIFRQPIG-RNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFKFTL 133 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C +P +MI D Y ++T + +++++ Sbjct: 134 LPICCLGNCDKSPTIMINDDLYSNVTEYSVIVLLESY 170 >gi|34496400|ref|NP_900615.1| NADH dehydrogenase subunit E [Chromobacterium violaceum ATCC 12472] gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase, chain E [Chromobacterium violaceum ATCC 12472] Length = 166 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 19/164 (11%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA-------------IEVV 64 S +S ++ +++YP + +SAV+ L A ++ RAA IE V Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALDER----RAAGETPEARCLNPELIEFV 57 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 AN L +A + E+ATFY + + PVG + + VC PC L G E K+ Sbjct: 58 ANYLGIAPVAAYEVATFYNMYDMKPVG-KFKITVCTNLPCALSGGVNAAEYISKKLGIAI 116 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEE 167 ++DG + E EC GAC +AP++++ +TPE +++ Sbjct: 117 GETSADGMYTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDK 160 >gi|256422832|ref|YP_003123485.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] gi|256037740|gb|ACU61284.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] Length = 154 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S +E+ AI + I P R + VI L Q+ GW+S ++E +A+ L ++ V Sbjct: 2 LSTTEKEAI--DHEIGLVPHKR--ATVIEALKIVQQHRGWISDDSVEEIAHYLGISPAEV 57 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY PVG R + +C + C + G + L + K+ D + Sbjct: 58 DSVATFYNLIFRKPVG-RHVILLCDSISCYVMGYKSLYAALQRKLQISFGQTCPDNRFTL 116 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +AP +MI KD Y D+T E+L++I+ ++ Sbjct: 117 LPNACLGCCDHAPAMMIDKDLYRDITIEQLDDILKKYA 154 >gi|325278930|ref|YP_004251472.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter splanchnicus DSM 20712] gi|324310739|gb|ADY31292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter splanchnicus DSM 20712] Length = 158 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQ G++ +VA+ L++ +V + TFY+ F ++P G + VC Sbjct: 28 LINVLHKAQHLFGYLPAEVQRIVADKLNIPVSKVYGVVTFYSFFTMTPKGEHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EK+++ + ++ DG S + C GAC AP+V+IG+ + + Sbjct: 87 TACYVRGAEKVLDEFKRILNINVGETTPDGKYSLSSLRCVGACGLAPVVLIGEKVFGRVV 146 Query: 162 PERLEEII 169 P +E+I+ Sbjct: 147 PGDVEKIL 154 >gi|189467140|ref|ZP_03015925.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM 17393] gi|189435404|gb|EDV04389.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM 17393] Length = 158 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A L++ RV + TFYT F ++P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYTFFTMTPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 ++++++ Sbjct: 147 AVDVKKVLE 155 >gi|226939460|ref|YP_002794533.1| NADH dehydrogenase subunit E [Laribacter hongkongensis HLHK9] gi|226714386|gb|ACO73524.1| NuoE [Laribacter hongkongensis HLHK9] Length = 166 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAV-----IPLLMRAQE----QEGWVSRAAIEVVANIL 68 S E+ ++ +++YP + +SAV I L R ++ +E ++ +E VA+ L Sbjct: 2 LSPEALQLIDREVAKYPADQARSAVMGALRIALTERREQGRTPEERCLTTELVEFVADYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + + E+ATFY + + PVG + + VC PC LRG + + K+ Sbjct: 62 GIPPVAAYEVATFYNMYDMKPVG-KYKLTVCTNLPCALRGGVDTADYLQKKLGIALGETT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 +DG + E EC GAC +AP++++ +TPE +++ + F Sbjct: 121 ADGKFTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDQKLAEF 165 >gi|159027691|emb|CAO89556.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 169 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 QSA+I +L +AQE G++ + VA L + RV +ATFY F L P G + V Sbjct: 35 QSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-V 93 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C T C ++G K++E N K +DG +S C GAC AP V+ Sbjct: 94 CMGTACYVKGSGKILEDIENSFDVKVGETTADGEISLVSARCIGACGIAPAVVF 147 >gi|160936106|ref|ZP_02083479.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC BAA-613] gi|158440916|gb|EDP18640.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC BAA-613] Length = 171 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 19 SEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SEE+ + + E+ + Y + ++I +L AQ G++ +V+A+ LD++ V Sbjct: 13 SEEALLKRIGELAAEYRGK--EGSLIQVLHMAQGIYGYLPLEVQKVIADALDISLAEVSG 70 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+ F P G ++VC T C +RG +K++E + + + +D ++E Sbjct: 71 VVTFYSFFSTQPRGEHT-IRVCLGTACYVRGGKKIVERLKELLDVEIGETTADRRFTFEV 129 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 C GAC AP + I Y+ + P++LE+I++ + +G Sbjct: 130 ARCIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEG 169 >gi|78223288|ref|YP_385035.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter metallireducens GS-15] gi|78194543|gb|ABB32310.1| tungsten-dependent benzoyl-CoA reductase-related protein bamG [Geobacter metallireducens GS-15] Length = 150 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++I ++ S++I +L+ Q + W+ + A++ V L + R+ IATFY F Sbjct: 6 IDQIIDKHDGE--ASSLIQILLDIQSEHNWLPKEALKRVCERLQVPMSRITHIATFYKAF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R V VC T C +RG +++++ + K +SD S E V C G C Sbjct: 64 SLVPKG-RHQVHVCMGTACHVRGAQRVLDTVQEVTGVKSGETDSDLKFSVETVNCLGCCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 P++ + + ++ P ++ +++ Sbjct: 123 LGPVMEVDGKHHGNIAPSQIASVLN 147 >gi|85059576|ref|YP_455278.1| NADH dehydrogenase subunit E [Sodalis glossinidius str. 'morsitans'] gi|84780096|dbj|BAE74873.1| NADH dehydrogenase I subunit E [Sodalis glossinidius str. 'morsitans'] Length = 177 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S E + Y +R +A I L Q+ GWV AI +A +L + Sbjct: 22 TFELSREEREAIKHEKHHYEDAR--AASIEALKIVQKNRGWVPDGAIAAIAQVLGIPGSD 79 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + ++ KP DG + Sbjct: 80 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQSLNIKPGQTTPDGRFT 138 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +M+ DT+ LTPE + +++ + Sbjct: 139 LLPTCCLGNCDKGPTMMVDDDTHLHLTPEGIGPLLEQY 176 >gi|301058585|ref|ZP_07199590.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] gi|300447317|gb|EFK11077.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] Length = 161 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E + R P+R ++ + L QE + WV+ + VA +L+MA + +ATFY+Q Sbjct: 12 EALLRIYPTR-RAVALEALKIVQEPKKWVTDEDLRDVAALLEMAPAELDSLATFYSQIFR 70 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 PVG +++C C + G L E + P D +W V C G C A Sbjct: 71 RPVGEHV-IRLCDGVSCWIMGETGLEERLSRLLSIGPGETTPDRRFTWLPVSCLGVCEQA 129 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFS 173 P +MI D Y + PE L+ I++ ++ Sbjct: 130 PAIMIDDDLYTRIQPEDLDAILERYA 155 >gi|224535654|ref|ZP_03676193.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus DSM 14838] gi|224522727|gb|EEF91832.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus DSM 14838] Length = 158 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A L++ RV + TFYT F ++P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYTFFTMTPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Y L Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146 Query: 162 PERLEEIID 170 ++++++ Sbjct: 147 AVDVKKVLE 155 >gi|26988907|ref|NP_744332.1| formate dehydrogenase subunit gamma [Pseudomonas putida KT2440] gi|24983718|gb|AAN67796.1|AE016411_1 formate dehydrogenase, gamma subunit, putative [Pseudomonas putida KT2440] Length = 160 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q + G++ A++ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG E L R ++ ++DG++S V C GAC +P + + + L Sbjct: 83 AESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACACSPALELDGQVHARL 142 Query: 161 TPERLEEIID 170 TPERL ++++ Sbjct: 143 TPERLRDLVN 152 >gi|33519941|ref|NP_878773.1| NADH dehydrogenase subunit E [Candidatus Blochmannia floridanus] gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [Candidatus Blochmannia floridanus] Length = 154 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E + + Y R +A I L Q+++GWVS AI++V+ +L ++ V Sbjct: 3 FNKEELDIIRLECTHYENDR--AASIEALKIIQKRQGWVSDDAIKLVSQVLHISESDVEG 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 IATFY Q PVG + V+ C + C + GCE++ + + + K + D + Sbjct: 61 IATFYNQIFRQPVG-KYIVRYCDSNVCYINGCEQIQQTLESSLGIKIGNTTQDNKFTLLP 119 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C +P++MI K Y + P + +I+ ++ Sbjct: 120 TCCMGLCDKSPVLMIDKKIYSCIVPSDIMQILRSY 154 >gi|146307438|ref|YP_001187903.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp] gi|145575639|gb|ABP85171.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp] Length = 170 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q+ GWV A E + +L + Sbjct: 11 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKARGWVPDGASEAIGEVLGI 68 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++ +D Sbjct: 69 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVLAEMHKQLGIGLGQTTAD 127 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C AP +MI DT+ D+ P+ + +++A+ Sbjct: 128 NRFTLLPVCCLGNCDKAPALMIDDDTFGDVRPDGVAALLEAY 169 >gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum ferrodiazotrophum] Length = 624 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 AVIP+ E+E +VS A+E++ I + +L + TFY F G R ++VC Sbjct: 25 AVIPMFHYFMERENYVSPEALELIGQITGFSQSDLLGVGTFYQYFSFHKEG-RHIIRVCL 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 TPC+ G + L+ + ++ DG S + +C G C AP ++I + + ++ Sbjct: 84 ATPCVYCGGKGLLSALQKELGIGLDETTPDGVFSLKPAQCVGQCHEAPTLVIDTNIHNNV 143 Query: 161 TPERLEEIIDAFSTGQGDTIRPGPQI 186 TP + ++ + G+ + P P + Sbjct: 144 TPGEIPALLKQYREGK---VSPQPAV 166 >gi|269837268|ref|YP_003319496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter thermophilus DSM 20745] gi|269786531|gb|ACZ38674.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter thermophilus DSM 20745] Length = 180 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 49 AQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG 108 AQ GWV + A +V+A+ L ++ RV + TFY F+ P G + + +C T C + G Sbjct: 43 AQNLYGWVPQPAAQVIADHLGVSVNRVYSLLTFYADFRTEPPG-KHFLLLCHGTACYVMG 101 Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-CQGACVNAPMVMIGKDTY-EDLTPERLE 166 ++LI R++ DG L+ + V C G C AP++ + TY LTP+RL Sbjct: 102 SQRLIATLRDEYGITNGEVTRDGELTLQVVNGCLGVCDLAPVIQVDHHTYCGRLTPDRLR 161 Query: 167 EIIDAFSTGQ 176 E ++A G+ Sbjct: 162 ETLEALKRGE 171 >gi|167761073|ref|ZP_02433200.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704] gi|167661307|gb|EDS05437.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704] Length = 161 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I Y S Q + ++ Q +V R +E +A L + +ATFY Sbjct: 12 IERIIHSYECS--QRYALAIMQDMQRTYQYVPREGLEALAEYLGCPVSALYAMATFYKAL 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G ++ C T C +RG LI+ ++ +P DG S+E V C G+C Sbjct: 70 SLVPKGEHT-IKCCDGTACHIRGASTLIDGIERELGIRPGETTKDGLFSFETVNCLGSCA 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 AP++++ Y +T E+L EII+ G Sbjct: 129 LAPVLVVDDVYYGKVTLEKLREIIEDVRKG 158 >gi|56387325|gb|AAV86074.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 158 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 4/145 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++++Y C +I +L QE+ ++ + A ++ L M+ ++ +ATFY F L Sbjct: 13 ILTKYNHDACN--IIAILQDTQEKYRYLPKEAFVYLSEKLGMSRAKIYSVATFYENFSLE 70 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNA 147 P G + +++C T C +R +++ R +++ +D + + E V C GAC A Sbjct: 71 PKG-KFVIKICDGTACHVRKSIPILDKLRKELNLSEAKTTTDDLIFTLETVSCLGACGLA 129 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P + + Y +TPE+ E+++ F Sbjct: 130 PAMTVNDKVYGSMTPEKAMELLNTF 154 >gi|256544553|ref|ZP_05471926.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) [Anaerococcus vaginalis ATCC 51170] gi|256399878|gb|EEU13482.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) [Anaerococcus vaginalis ATCC 51170] Length = 177 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L AQ G++ +E+++N L++ V +ATFY+QF P G + + + Sbjct: 44 KGPLMPILQEAQSIFGYLPDEMMELISNKLNIPLAEVYGVATFYSQFTFVPKG-KTDIHI 102 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G ++ ++ K DG S E C G C AP+V I + E Sbjct: 103 CLGTACYVKGAADILNEFEQRLGIKKGETTPDGKFSISETRCLGNCGAAPVVEINGEQVE 162 Query: 159 DLTPERLEEIID 170 T + + ++++ Sbjct: 163 HFTKDDVSKVLE 174 >gi|269791765|ref|YP_003316669.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099400|gb|ACZ18387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 174 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E I + P + +I +L +AQE G++ VA L++ +V + TFY+ F Sbjct: 17 LEEFIDKLPNKK--GELITVLHKAQEIFGYLPEEVQAFVARKLEIPLAKVYGVVTFYSFF 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G A V VC T C +RG E ++ + K + DG S + + C GAC Sbjct: 75 TMEPKGKVA-VSVCMGTACYVRGAEDVLHELEKAMGVKAGKVSEDGYFSLDTLRCVGACG 133 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V++ + +TP + I+D + Sbjct: 134 LAPVVIVNGRVFGRVTPADVPGIVDQY 160 >gi|303245640|ref|ZP_07331923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|466363|gb|AAA87054.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] gi|302492903|gb|EFL52768.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 171 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + V Sbjct: 39 EGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KYPISV 97 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Y Sbjct: 98 CMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKVYG 157 Query: 159 DLTPERLEEIIDAF 172 ++TP ++++I+ + Sbjct: 158 NVTPGQVKKILAEY 171 >gi|325262529|ref|ZP_08129266.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] gi|324032361|gb|EGB93639.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] Length = 164 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 5/167 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 LA+++ P FS ++E + +VI+ + A++P+L +AQ+ G++ +++ Sbjct: 2 LAKKQTVP--FSGTKEQEESLLKVITELKDEK--GALMPILQKAQDIYGYLPIEVQTIIS 57 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 N + ++ + TFY+QF LSP G + + VC T C ++G + K+ Sbjct: 58 NETGIPLEKIYGVVTFYSQFTLSPKG-KYQISVCLGTACYVKGSGDIYNALMEKLGIVGG 116 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++M+ + Y LT + +++I+ + Sbjct: 117 ECTPDGKYSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163 >gi|288818980|ref|YP_003433328.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] gi|288788380|dbj|BAI70127.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] gi|308752565|gb|ADO46048.1| formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] Length = 153 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A+IP+L QE++G++ ++++++ L+++ V + TFY+ F+L P G ++V Sbjct: 17 KNALIPILHIIQERQGYIPEYTVDLLSSELNLSKAEVWGVITFYSDFRLKPPGKHI-IKV 75 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C+ G K+ E + + DG + E V C G C AP VM+ Y Sbjct: 76 CRSEACLAMGGRKVQEHIKCILGIDFGQTTHDGIFTLEGVYCFGNCACAPSVMVDGKLYG 135 Query: 159 DLTPERLEEIID 170 PER++ I++ Sbjct: 136 RAFPERIDMIME 147 >gi|255526811|ref|ZP_05393710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296186423|ref|ZP_06854826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255509490|gb|EET85831.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296048870|gb|EFG88301.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 159 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L +AQ G++S+ + VA LD+ +V + TFY+ F P G + + + Sbjct: 25 KGSLISVLHKAQNLFGYLSKDVQKFVAKKLDIPVSKVNGVVTFYSYFTEEPTG-KYVINI 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G ++E K+ + SDG + + + C GAC AP+V + Y Sbjct: 84 CMGTACFVKGSGDVLEEFERKLDIEVGETTSDGKFTIQVLRCVGACGLAPVVTVNDKVYG 143 Query: 159 DLTPERLEEIIDAF 172 T + +++I+D + Sbjct: 144 HFTKQMVDKILDEY 157 >gi|328543745|ref|YP_004303854.1| ATP synthase subunit E [polymorphum gilvum SL003B-26A1] gi|326413489|gb|ADZ70552.1| ATP synthase subunit E [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+ R+ + + ++P+L QE+ GW+ AA+ +A L++ V +ATFY F+ Sbjct: 15 VVERHATT--EGPLLPILHEVQEEFGWLPPAALRTIAEGLNLGRAEVHGVATFYHDFRTE 72 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G R +++C C G E++ E R ++ +DG+++ E V C G C AP Sbjct: 73 PAG-RHRLKICRAEACQAMGGERIAERARAELGLDWHETAADGSVTLEPVYCLGLCACAP 131 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174 M+ L +R I+ T Sbjct: 132 AAMVDDRLEGRLDADRFARILAEVRT 157 >gi|256827980|ref|YP_003156708.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium baculatum DSM 4028] gi|256577156|gb|ACU88292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium baculatum DSM 4028] Length = 175 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++I +L Q+ G+ I +A+ ++ V + +FY+ F L P G R +++V Sbjct: 42 QGSLITVLRLCQDIVGYFPLELIRYIASGMNQPLSTVYGVISFYSLFSLKPKG-RHNIRV 100 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG ++++ + K G S E V C GAC AP++++ +DT+ Sbjct: 101 CTGTACYVRGVREVLDRVERRFGVKAGGTCESGRFSLEPVRCLGACGLAPVMVVDRDTHG 160 Query: 159 DLTPERLEEIIDAF 172 +TP+ EI++ + Sbjct: 161 GVTPDSACEILEGY 174 >gi|167761223|ref|ZP_02433350.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704] gi|167660889|gb|EDS05019.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704] Length = 164 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ ++E + EVI + +++P+L RAQ+ G++ ++++N + ++ Sbjct: 10 FNGTKEQEKELLEVIHELKDEK--GSLMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+QF L+P G R + VC T C ++G + K+ DG S Sbjct: 68 YGVVTFYSQFNLNPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++M+ + Y LT + +++I+ + Sbjct: 127 DACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163 >gi|94309498|ref|YP_582708.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cupriavidus metallidurans CH34] gi|93353350|gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus metallidurans CH34] Length = 169 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q+ +G++ A+ VVA L+++ V + TFY F+ P G R VQVC Sbjct: 30 GALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHFRERPAG-RTVVQVC 88 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G + L R + +DG + E V C G C P + IG + Sbjct: 89 RAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMTIGDRLHGR 148 Query: 160 LTPERLEEIIDA 171 + +R +++IDA Sbjct: 149 VDMQRFDKLIDA 160 >gi|158320024|ref|YP_001512531.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158140223|gb|ABW18535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 158 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 4/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++++ +Y + S++I +L Q ++ A++ VA +DM+ R+ IATFY F Sbjct: 10 IDQILMKYGNN--PSSIITMLQEIQGVYRYLPEEALDYVAASMDMSASRIFGIATFYENF 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGAC 144 L P G + +++C T C +R ++ ++ +H D + E V C GAC Sbjct: 68 SLKPKG-KFIIKICDGTACHVRKSIPILNTLYKELSLNSEMHTTEDLMFTVETVSCLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP++ + Y +TPE E+++ Sbjct: 127 GLAPVITVNDKVYGKMTPESTVELLNTL 154 >gi|187477323|ref|YP_785347.1| formate dehydrogenase subunit gamma [Bordetella avium 197N] gi|115421909|emb|CAJ48429.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella avium 197N] Length = 155 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++PLL QE+ G + + V+A L ++ V + TFY F+ P G R +Q+C Sbjct: 21 GALLPLLHALQEELGCIPPETVGVLAEALSLSRAEVHGVITFYPHFRTEPAG-RHVLQIC 79 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G + L + ++ R++DG + E C G C +P +M+ + Sbjct: 80 RAEACQAMGGDALAAHAQARLGCDFHARSADGAFTLEPAYCLGLCAQSPALMLDGRPHAR 139 Query: 160 LTPERLEEIID 170 +TP RL+ +ID Sbjct: 140 MTPARLDRLID 150 >gi|145298720|ref|YP_001141561.1| NADH dehydrogenase subunit E [Aeromonas salmonicida subsp. salmonicida A449] gi|142851492|gb|ABO89813.1| NADH dehydrogenase I, E subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 188 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A L + V +ATFY+Q PVG R ++V Sbjct: 55 RAASIEALKIVQQARGWVPDGAIYAIATELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 113 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G E L+ + + P ++DG + V C G C P +MI DTY Sbjct: 114 CDSMVCYINGHEGLLAGLKEVMDLAPGQTSADGRFTLLPVCCLGNCDKGPALMIDDDTYG 173 Query: 159 DLTPERLEEIIDAF 172 L L + ++A+ Sbjct: 174 GLDAATLIKTLEAY 187 >gi|148548761|ref|YP_001268863.1| formate dehydrogenase subunit gamma [Pseudomonas putida F1] gi|148512819|gb|ABQ79679.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas putida F1] Length = 160 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q + G++ A++ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG E L R ++ ++DG +S V C GAC +P + + + L Sbjct: 83 AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142 Query: 161 TPERLEEIID 170 TPERL ++++ Sbjct: 143 TPERLRDLVN 152 >gi|163857996|ref|YP_001632294.1| formate dehydrogenase subunit gamma [Bordetella petrii DSM 12804] gi|163261724|emb|CAP44026.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella petrii] Length = 188 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G + A+ +A L+++ V + TFY F+ P G R ++VC Sbjct: 50 ALLPILHAVQDELGCIPADAVPAIAEALNLSRAEVHGVLTFYPHFRTEPAG-RHVLEVCR 108 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E+L E R + ++DG ++ E V C G C +P VM+ + + Sbjct: 109 AESCQAMGGERLAEHARETLGCDFHGTSADGAVTLEPVYCLGLCAQSPAVMLDGQPHARV 168 Query: 161 TPERLEEIIDAFSTGQGDTIRP 182 TP++L ++ + Q D +P Sbjct: 169 TPDKLGRLLSRAT--QSDEAQP 188 >gi|167752243|ref|ZP_02424370.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216] gi|167660484|gb|EDS04614.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216] Length = 164 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L Q+ G++ + E++A L ++ RV + +FY+ F + P G + + VC Sbjct: 28 LINILHGVQDTLGYLPKEVQELIALELGISAARVYGVVSFYSFFTMKPKG-KYPISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EK+++ R ++ + DG S + + C GAC AP+VMIG Y L Sbjct: 87 TACYVRGGEKVLDEFRRQLGIEVGGTTPDGLFSLDSLRCVGACGLAPVVMIGPRVYGRLK 146 Query: 162 PERLEEIID 170 ++ I+D Sbjct: 147 VTDVKGILD 155 >gi|134299513|ref|YP_001113009.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052213|gb|ABO50184.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] Length = 163 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S +I +L Q G++ + + +A + ++ VL +ATFY QF L P G ++VC Sbjct: 24 SHLIGILQEVQSDYGYLPKEVLTYIATSMGISPATVLGVATFYAQFSLIPKGKYV-IRVC 82 Query: 100 GTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 T C +RG E ++ R ++ +KP D + E V C GAC AP+V+ ++ Sbjct: 83 DGTACHVRGSEPIMMALRKELGINTEKP--TTDDLMFTLETVSCLGACGLAPVVVADEEV 140 Query: 157 YEDLTPERLEEII 169 + +TP+ + EI+ Sbjct: 141 HGQMTPDGILEIV 153 >gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM 6192] gi|306532784|gb|ADN02318.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM 6192] Length = 160 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L + QE G++ R +A ++D+ ++ + TFY F+L G + + VC Sbjct: 27 LIMVLHKTQEIYGYIPREIAMELAKVIDVPLAKIYGVITFYHFFKLRKPG-KHRISVCMG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C L+G E +++ + + P DG S+E V C G C AP+VM+ + Y +T Sbjct: 86 TACFLKGGEDILKELEDLLGVGPNTATEDGLFSFEAVRCLGCCGLAPVVMVDGEVYGKVT 145 Query: 162 PERLEEIIDAF 172 + L I+ + Sbjct: 146 KDDLPGILAKY 156 >gi|253989003|ref|YP_003040359.1| NADH dehydrogenase subunit E [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780453|emb|CAQ83615.1| nadh dehydrogenase i chain e (nadh-ubiquinone oxidoreductase chain 5 (nuo5) [Photorhabdus asymbiotica] Length = 182 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F S E + + Y R +A I L Q+ GWV AI +A++L + Sbjct: 26 ANFVLSVEEHDAIEQEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVLGIPAS 83 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ P DG Sbjct: 84 DVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTTQDGRF 142 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DT+ + PE +E++++ + Sbjct: 143 TLLPTCCLGNCDKGPTMMIDDDTHSSVKPEEIEKLLEQY 181 >gi|254520091|ref|ZP_05132147.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA] gi|226913840|gb|EEH99041.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA] Length = 173 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S++I +L AQ G++ R E +A L++ +V + TFY+ F P G + + Sbjct: 37 ESSLISVLHHAQGLYGYLGREVQEYIAYRLNIPVSKVYGVITFYSYFSTEPKGKYV-ISI 95 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG ++E + + K +DG + + + C G+C AP+V++ Y Sbjct: 96 CTGTACFVRGACDILEDFKKILGIKEGETTNDGLFTLDTLRCVGSCAIAPVVLVNDKVYG 155 Query: 159 DLTPERLEEIID 170 T ++ E+I+ Sbjct: 156 YFTKPQVNELIN 167 >gi|166362849|ref|YP_001655122.1| bidirectional hydrogenase complex protein HoxE [Microcystis aeruginosa NIES-843] gi|166085222|dbj|BAF99929.1| putative bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] Length = 169 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 QSA+I +L +AQE G++ + VA L + RV +ATFY F L P G + + Sbjct: 35 QSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-I 93 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C T C ++G K++E N K +DG +S C GAC AP V+ Sbjct: 94 CMGTACYVKGSGKILEDIENAFDVKVGETTADGEISLVSARCIGACGIAPAVVF 147 >gi|212712279|ref|ZP_03320407.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM 30120] gi|212685025|gb|EEB44553.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM 30120] Length = 179 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%) Query: 11 FQP---SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 F+P F +E + Y +R +A I L Q+ GWV AI +A++ Sbjct: 17 FEPQVNHGFVLTEHERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADV 74 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+Q PVG R ++ C + C + G + L +++ +P Sbjct: 75 LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQT 133 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +DG + C G C P +MI +DT+ + PE ++++++ + Sbjct: 134 TADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPENIQKLLEQY 178 >gi|73540323|ref|YP_294843.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] gi|72117736|gb|AAZ59999.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] Length = 179 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q+ G++ A+ V+A L+++ V + TFY F+ P G R VQVC Sbjct: 32 GALLPILHEIQDTHGYIPDTAVPVIAKALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G E L E + + +DG ++ E V C G C P VM+G+ + Sbjct: 91 RAEACQSVGAEALAEHAKRALGCDFHETTADGAVTLEPVYCLGQCACGPAVMMGEQLHGY 150 Query: 160 LTPERLEEII 169 + +R + ++ Sbjct: 151 VDAKRFDVLV 160 >gi|217968067|ref|YP_002353573.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM 6724] gi|217337166|gb|ACK42959.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E++ +P R +I +L Q +++ I+ A L++ V +A+FY+ F Sbjct: 6 EILESFP--RDPDYIIEILHELQNNNPYNYLTPEDIKACAEYLELPVSYVEGVASFYSMF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R +++C + PC L G E L+E K++ K D + E C G C Sbjct: 64 SLKPRG-RYVIRLCDSPPCHLVGSESLLEYLERKLNIKVGETTEDRVFTLEVTSCLGVCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP +MI + Y +LT E++++I++ Sbjct: 123 VAPAMMINDEVYGNLTFEKIDKILE 147 >gi|70733836|ref|YP_257476.1| formate dehydrogenase subunit gamma [Pseudomonas fluorescens Pf-5] gi|68348135|gb|AAY95741.1| formate dehydrogenase, gamma subunit [Pseudomonas fluorescens Pf-5] Length = 158 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 3/147 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ ++ R+ S A++P+L + QE+ G++ AI +A+ L+++ V + +FY Sbjct: 10 LIHRLLERHKDS--PGALLPILHQIQEELGYIPDPAIPEIAHSLNLSQAEVRGVISFYHD 67 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+ +P R +++C C RG E+L R ++ ++DG +S V C GAC Sbjct: 68 FRSAP-PARHILRLCRAESCQSRGAEQLAAQLRERLQLDDHGSSADGNISLRPVYCLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171 +P + + + L+ ERL+ ++D+ Sbjct: 127 ACSPALELDGQLHARLSAERLDALLDS 153 >gi|315186944|gb|EFU20702.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Spirochaeta thermophila DSM 6578] Length = 160 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L + QE G++ R +A +LD+ ++ + TFY F+L G + + VC Sbjct: 27 LIMVLHKTQEIYGYIPREIAMELAKVLDVPLAKIYGVITFYHFFKLRKPG-KHRISVCLG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C L+G E +++ + + P DG S+E V C G C AP++M+ + Y +T Sbjct: 86 TACFLKGGEDILKELEDLLGVGPNTATEDGLFSFEAVRCLGCCGLAPVLMVDGEVYGKVT 145 Query: 162 PERLEEIIDAF 172 + L I+ + Sbjct: 146 KDDLPGILAKY 156 >gi|283853100|ref|ZP_06370355.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] gi|283571498|gb|EFC19503.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] Length = 171 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + V Sbjct: 39 QGHLVTVLHKAQSVFGYLPIEVQQFVADYMEVPLAQVYGVVSFYTFFTMVPKG-KHPISV 97 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Y Sbjct: 98 CMGTACFVKGADKVVRAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKVYG 157 Query: 159 DLTPERLEEII 169 ++T ++++I+ Sbjct: 158 NVTAGQVKKIL 168 >gi|117620389|ref|YP_856315.1| NADH dehydrogenase subunit E [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561796|gb|ABK38744.1| NADH-quinone oxidoreductase chain e [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A L + V +ATFY+Q PVG R ++V Sbjct: 47 RAASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 105 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G E+L+ + + P ++DG + V C G C P +MI DTY Sbjct: 106 CDSMVCYINGHEQLLAGLKEVMDLAPGQTSADGRFTLLPVCCLGNCDKGPALMIDDDTYG 165 Query: 159 DLTPERLEEIIDAF 172 L L + ++A+ Sbjct: 166 GLDAVSLLKTLEAY 179 >gi|293376705|ref|ZP_06622928.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sanguinis PC909] gi|325845177|ref|ZP_08168485.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sp. HGF1] gi|292644662|gb|EFF62749.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sanguinis PC909] gi|325488773|gb|EGC91174.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sp. HGF1] Length = 158 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 ++P+L AQ+ G++ + ++N ++ R+ + TFY+QF P G + VC Sbjct: 27 GLMPILHEAQDIFGYIPLEVQKFISNRTGISVSRIHGVVTFYSQFSTEPKGENV-IGVCL 85 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G + +++ + ++ +P SDG S C GAC AP++ I D Y + Sbjct: 86 GTACYVKGAQAILQKFKEELGIEPEQTTSDGKFSLVATRCIGACGLAPVITINDDVYGKM 145 Query: 161 TPERLEEIIDAFS 173 ++ I+ ++ Sbjct: 146 DASQVSSILKKYN 158 >gi|126656035|ref|ZP_01727419.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. CCY0110] gi|126622315|gb|EAZ93021.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. CCY0110] Length = 171 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ +E VA+ L + RV +ATFY F L P G V V Sbjct: 35 QDALIEILHKAQEAFGYLEPDILEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHTCV-V 93 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ K +D +S C GAC AP ++ + Sbjct: 94 CLGTACYVKGSDKVLTALQQELGIKSGETTTDKQISLLSARCLGACGIAPAIVFDGEVAG 153 Query: 159 DLTPERLEEIIDAFST 174 PE E I + T Sbjct: 154 KQMPENALEKIKTWQT 169 >gi|326402926|ref|YP_004283007.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] gi|325049787|dbj|BAJ80125.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] Length = 165 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ G VS + VA +L M + +ATFY PVG R + + Sbjct: 32 RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + R ++ +P DG + + C G C AP +MIG D + Sbjct: 91 CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150 Query: 159 DLTPERLEEIIDAF 172 +LTPER++ I++ + Sbjct: 151 NLTPERIDAILEQY 164 >gi|317052149|ref|YP_004113265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum indicum S5] gi|316947233|gb|ADU66709.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum indicum S5] Length = 173 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P S + + V + RY +R A+I +L AQE G++ + VA LD+ Sbjct: 8 PGSATTDDPRIRLVERTLKRY--ARQPDALIEVLHTAQEAYGYLPEGILTHVARELDLPE 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V+ +ATFY F L P G + + VC T C ++G +++ + DG Sbjct: 66 SQVMGVATFYHFFSLRPRGEHSCI-VCTGTACYVKGAGEIVSAVEKEYGITAGQTTPDGK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIIDAFSTGQGD 178 LS C G C APM+ + + TPE LE++ + G+G+ Sbjct: 125 LSLGAARCLGNCSLAPMLTLDDEVLGRETPEGTLEKLRQHIAAGRGE 171 >gi|37526974|ref|NP_930318.1| NADH dehydrogenase subunit E [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain 5) (NUO5) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 182 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F S E + Y R +A I L Q+ GWV AI +A++L + Sbjct: 26 ADFVLSTEEHDAIEHEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVLGIPAS 83 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ P DG Sbjct: 84 DVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTTKDGRF 142 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DT+ + PE +E++++ + Sbjct: 143 TLLPTCCLGNCDKGPTMMIDDDTHSSVRPEEIEKLLEQY 181 >gi|300023971|ref|YP_003756582.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525792|gb|ADJ24261.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 176 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ + Q G+V + ++A L+ + + + TFY +F PVG V++C Sbjct: 41 LLEIFHEMQHDLGYVPEETLPIIAKALNRSRAEIYGVLTFYHEFHRHPVGKHV-VKICRA 99 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G ++L + +K++ +DG ++ E+V C G C +P VM+G+ Y + Sbjct: 100 EACQSMGTDELCQHAESKLNVPLGGTTADGAVTIEQVFCLGNCALSPAVMVGEKLYGRVD 159 Query: 162 PERLEEII 169 P+R +EII Sbjct: 160 PKRFDEII 167 >gi|197116577|ref|YP_002137004.1| NADH dehydrogenase subunit E [Geobacter bemidjiensis Bem] gi|197085937|gb|ACH37208.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem] Length = 156 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++E + + R A+ P ++ Q GW++ A+ A++L ++ ++V E+A Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAASLLGLSPLQVEELA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY PVG + + VC + C C+ +IE + ++ + +DG + Sbjct: 62 TFYEMIYRRPVGKKV-IHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C ++P + +G Y LTP ++EI++ Sbjct: 121 CMGRCGDSPAMSVGGTPYGHLTPHLVDEILE 151 >gi|301061250|ref|ZP_07202032.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2] gi|300444569|gb|EFK08552.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2] Length = 165 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 I ++ Q+ G++S A+ A++L M + + E+ATFY PVGT + VC ++ Sbjct: 26 INVMFALQKCYGYLSDEAVAEAAHMLGMTTLEIEELATFYDFLYREPVGTYV-IHVCDSS 84 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162 C + G E +++ K+ P +DG + V C G C +AP+++I Y LTP Sbjct: 85 ICWMYGEETVMDYLVKKLAITPGETTADGLFTILPVCCVGYCDHAPVMLINGKPYGPLTP 144 Query: 163 ERLEEIID 170 E ++ I++ Sbjct: 145 EYIDRILE 152 >gi|183599633|ref|ZP_02961126.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827] gi|188021885|gb|EDU59925.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827] Length = 180 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A +L + V +ATFY+Q PVG R ++ Sbjct: 47 RAASIEALKIVQKNRGWVEDGAIYAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHIIRY 105 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + L N+++ +P +DG + C G C P +MI +DT+ Sbjct: 106 CDSVVCHITGYQGLEAEIINQLNIRPGQTTADGRFTLLPTCCLGNCDKGPTMMIDEDTHS 165 Query: 159 DLTPERLEEIIDAF 172 + PE ++++++ + Sbjct: 166 YVQPEDIKKLLEQY 179 >gi|188997421|ref|YP_001931672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932488|gb|ACD67118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 160 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 ++N L++ ++ I +FY F++ R H++VC PC + GC+KLIE+ ++ Sbjct: 50 LSNYLEVPLNQIERIVSFYDMFRVKR-NARHHIRVCKNLPCHIMGCKKLIELFEKLTCEE 108 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAFS 173 + +G E VEC GAC AP MI D Y+ +T E+L EI+ ++ Sbjct: 109 RNQESKNGRFYIETVECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKYT 160 >gi|172037234|ref|YP_001803735.1| NADH dehydrogenase I subunit E [Cyanothece sp. ATCC 51142] gi|171698688|gb|ACB51669.1| probable NADH dehydrogenase I chain E [Cyanothece sp. ATCC 51142] Length = 173 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ +E VA+ L + RV +ATFY F L P G V V Sbjct: 35 QDALIEILHKAQEAFGYLEPDVLEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHTCV-V 93 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----G 153 C T C ++G +K++ + ++ K +D +S C GAC AP V+ G Sbjct: 94 CLGTACYVKGSDKILAALQQELGIKSGETTADKQISLLSARCLGACGIAPAVVFDGEVTG 153 Query: 154 KDTYEDL 160 K T E++ Sbjct: 154 KQTAENV 160 >gi|301063637|ref|ZP_07204151.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300442285|gb|EFK06536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 175 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L Q ++ + + +A + + R+ +ATFY+ F L P G + +C Sbjct: 37 LIMILQAIQAAYNYLPQPVLAYLAEKIGIPLSRIYGVATFYSTFSLEPRGKNI-INICLG 95 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG K+++ + +H DG + E V C G C P+V I +D Y + Sbjct: 96 TACHVRGAGKVLQRIEDTLHVDNGKTTEDGQFTLESVRCIGCCSLGPVVKINEDVYGRIG 155 Query: 162 PERLEEIIDAFS 173 E L++I+D + Sbjct: 156 SEDLDKILDHYG 167 >gi|148269833|ref|YP_001244293.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila RKU-1] gi|170288519|ref|YP_001738757.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2] gi|281412284|ref|YP_003346363.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila RKU-10] gi|147735377|gb|ABQ46717.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila RKU-1] gi|170176022|gb|ACB09074.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2] gi|281373387|gb|ADA66949.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila RKU-10] Length = 157 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 53 EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL 112 + ++ A E+VA L + RV E+ TFYT F P G + ++VC + PC + ++ Sbjct: 34 DNFIPPEAAEIVAEELGVPLSRVYEVLTFYTMFSTKPKG-KYVIRVCESLPCHVENGREV 92 Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 ++ + + SDG + E C G C AP++M+ + Y ++TP R++++ID Sbjct: 93 VKALKEILKIDFGQTTSDGLFTLEMTSCLGLCGVAPVIMVNDEYYGNMTPGRVKDLID 150 >gi|148260121|ref|YP_001234248.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5] gi|146401802|gb|ABQ30329.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5] Length = 165 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ G VS + VA +L M + +ATFY PVG R + + Sbjct: 32 RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + R ++ +P DG + + C G C AP +MIG D + Sbjct: 91 CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150 Query: 159 DLTPERLEEIIDAF 172 +LTPER++ I++ + Sbjct: 151 NLTPERIDAILEQY 164 >gi|167032815|ref|YP_001668046.1| formate dehydrogenase subunit gamma [Pseudomonas putida GB-1] gi|166859303|gb|ABY97710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida GB-1] Length = 160 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q G++ AA+ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPILHAIQHDIGYIPDAAVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG E L R ++ ++DG +S V C GAC +P + + + L Sbjct: 83 AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142 Query: 161 TPERLEEIID 170 TPERL +++ Sbjct: 143 TPERLRALVN 152 >gi|237755576|ref|ZP_04584193.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium yellowstonense SS-5] gi|237692275|gb|EEP61266.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium yellowstonense SS-5] Length = 160 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 ++N L++ ++ I +FY F++ R H++VC PC + GC+KLIE+ ++ Sbjct: 50 LSNYLEVPLSQIEGIVSFYDMFRVKR-NARHHIRVCKNLPCHIMGCKKLIELFEKLTGEE 108 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAFS 173 + +G E VEC GAC AP MI D Y+ +T E+L EI+ ++ Sbjct: 109 RNQESKNGRFYIETVECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKYT 160 >gi|303242579|ref|ZP_07329056.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302589883|gb|EFL59654.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 161 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F+F +++++S++ S ++ +I +L QE+ ++ + ++ L+++ R Sbjct: 4 TFNFK-----MIDDILSKHGLS--ETYIIAILQSIQEKYRYIPKEVFPYLSKKLNVSEAR 56 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGT 132 + +ATFY F L P G + +++C T C +R ++E R K+ K + D Sbjct: 57 IFSVATFYENFSLEPKG-KYVIKICDGTACHVRKSIPILERLRKELKLSDKKI-TTDDLM 114 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + E V C GAC AP++ + + +TP++ E++ G D Sbjct: 115 FTVETVSCLGACGLAPVITVNDKVHPAMTPDKASELLKELREGNAD 160 >gi|254480843|ref|ZP_05094089.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] gi|41582333|gb|AAS07947.1| NADH-quinone oxidoreductase, E subunit [uncultured marine bacterium 463] gi|214038638|gb|EEB79299.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] Length = 167 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 + P R + I L Q GWVS ++ +A L M+ + IATFY PVG Sbjct: 27 HVPYR-DAVAIDALKIVQAHRGWVSDESLSAIAAHLHMSADELDGIATFYNLIYRRPVGD 85 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C ++GC+ L + ++ + SD + V C GAC AP++M+ Sbjct: 86 KV-ILLCNSISCWIKGCDNLQQRITEELGVELGETTSDNRYTLLPVTCLGACDKAPVMMV 144 Query: 153 GKDTYEDLTPERLEEIIDAFST 174 G + +EDL E + I+ +T Sbjct: 145 GDELHEDLCEESIIRILGGSTT 166 >gi|261346154|ref|ZP_05973798.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541] gi|282565807|gb|EFB71342.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541] Length = 179 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%) Query: 11 FQP---SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 F+P F ++E + Y +R +A I L Q+ GWV AI +A + Sbjct: 17 FEPQLNHGFILTDEERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIAEV 74 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+Q PVG R ++ C + C + G + L +++ +P Sbjct: 75 LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQT 133 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI +DT+ + PE ++++++ + Sbjct: 134 TEDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVQPENIQKLLEQY 178 >gi|222054363|ref|YP_002536725.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221563652|gb|ACM19624.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 169 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L ++ ++V E+ATFY PVG + + V Sbjct: 21 REAAVDVMKELQLHYGWLTDEAVVEAAGLLGLSPLQVEELATFYEMIYRQPVGKQV-IHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E ++ + KP +DG + C G C + P +MIG+ Y Sbjct: 80 CDSISCWAMGGETMMAHLAGLLGIKPGETTADGQFTLLPCACLGNCGDGPTMMIGEKIYG 139 Query: 159 DLTPERLEEIIDAF 172 LT L E+I F Sbjct: 140 KLTVPLLTEMIGWF 153 >gi|224368768|ref|YP_002602929.1| NuoE [Desulfobacterium autotrophicum HRM2] gi|223691484|gb|ACN14767.1| NuoE [Desulfobacterium autotrophicum HRM2] Length = 164 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I +L +QE G++ I +++ L + +V +ATFY+ F L+P G R ++VC Sbjct: 32 GSLISVLRESQEVVGYLPSELINHISHGLVLPTSQVFGVATFYSFFSLTPKG-RHTIRVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ I K D S E V C GAC AP++++ KD Y Sbjct: 91 TGTACYVKGIKEAIGRIHGTYGIKEGETTEDRKFSLEGVRCLGACGLAPVMIVDKDIYGQ 150 Query: 160 LTPERLEEIIDAF 172 +T +++ I++ + Sbjct: 151 VTSDKVINILEKY 163 >gi|326561570|gb|EGE11911.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 46P47B1] Length = 169 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ I YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + Sbjct: 25 IHHHIHYYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEGVATFFNRI 82 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG R + VC + C L G E L+ + ++ + +DG + + C G C Sbjct: 83 YRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCD 141 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 V+I +DTY + P + +++ + Sbjct: 142 KGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|310826463|ref|YP_003958820.1| HydC [Eubacterium limosum KIST612] gi|308738197|gb|ADO35857.1| HydC [Eubacterium limosum KIST612] Length = 156 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L QE+ G++ + +A+ LD+ V +ATFY+QF L P G + + VC Sbjct: 27 LMQILQETQEKYGYLPIELQQTIADELDIPLTEVYGVATFYSQFTLKPKG-KYKIGVCLG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G + +++ + + DG S + C GAC AP++ I +D Y L+ Sbjct: 86 TACYVKGSQAILDKVTDTLGLAVGDTTEDGKFSVDATRCVGACGLAPVMSINEDVYGRLS 145 Query: 162 PERLEEIIDAF 172 +++I++ + Sbjct: 146 VNEVKDILEKY 156 >gi|118594390|ref|ZP_01551737.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181] gi|118440168|gb|EAV46795.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181] Length = 157 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++PL+ Q+ G++ + ++++ +++ + TFY F+ SP G +QVC Sbjct: 24 ALLPLMHAIQDSLGYIPEDSYPIISSAYNLSIAEIHGFVTFYHHFRTSPSGKNI-LQVCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E + C+ + + DG ++ E V C G C +P VM+ + Sbjct: 83 AESCQSMGSESIENYCKKVLGVDYHETSKDGVITLEPVYCLGNCACSPSVMMNDKVIGRV 142 Query: 161 TPERLEEIIDA 171 TPE+++ II A Sbjct: 143 TPEKIDNIIKA 153 >gi|37787351|gb|AAP50519.1| Hox1E [Thiocapsa roseopersicina] Length = 164 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA+ LD+ +V +ATFY F L P G A V VC Sbjct: 33 ALIETLHSVQDAFGFLDEGSLRFVASSLDLPLSKVYGVATFYHLFALKPKGRHACV-VCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G L+E + + P D LS C GAC AP ++I D L Sbjct: 92 GTACYIKGAGGLVERLQERYDINPGETTEDDRLSLLTARCVGACGLAPAIVIDGDVLGKL 151 Query: 161 TPE----RLEEI 168 E +LEE+ Sbjct: 152 DSESLIAKLEEL 163 >gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] Length = 780 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 4/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ +I R SR +IPLL Q++ ++ A+ V ++ +++ ++TFY+QF Sbjct: 5 VDAIIDRIGTSR--RDIIPLLQALQDEFSYLPSDALLRVYERTEIDRAQLISVSTFYSQF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGAC 144 + P G ++VC T C ++G + + R ++ ++ +D S E++ C G C Sbjct: 63 RHVPYGKHI-IKVCTGTACHVKGANNVYDAFRRELKMEEDRITTADQEYSIEKIACLGCC 121 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V I + Y + P R+ E++D F Sbjct: 122 ALAPVVQIDEKIYGHVQPGRVNEVLDEF 149 >gi|225405664|ref|ZP_03760853.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme DSM 15981] gi|225042809|gb|EEG53055.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme DSM 15981] Length = 170 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L AQ G++ +V+A+ LD+ V + TFY+ F P G R ++V Sbjct: 34 EGSLIQVLHMAQGIYGYLPIEVQKVIADTLDIPLAEVAGVVTFYSFFSTQPRG-RHTIRV 92 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K++E + + + D ++E C GAC AP + I Y+ Sbjct: 93 CLGTACYVRGGKKIVERIKELLDVEIGETTKDRLFTFEVARCIGACGLAPAMSIDDQVYK 152 Query: 159 DLTPERLEEIIDAF 172 + P++LE+I+ + Sbjct: 153 QVNPDKLEQILKRY 166 >gi|302342959|ref|YP_003807488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] gi|301639572|gb|ADK84894.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] Length = 168 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 11/138 (7%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A+IP+L Q G++ A + +A+ L MA V +ATFY+ F + P G R V+VC Sbjct: 36 GALIPVLQACQGVVGYLPEAVQQRIADGLGMAGHEVFGVATFYSFFTMKPRG-RNVVRVC 94 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-----LSWEEVECQGACVNAPMVMIGK 154 T C +RG ++ + +++ Q L N+DGT + E V C GAC AP+V+I + Sbjct: 95 LGTACYVRGGKETM----DRLTQH-LTLNADGTTEDRRFTVEGVRCLGACGVAPVVVINE 149 Query: 155 DTYEDLTPERLEEIIDAF 172 DT+ + + + +++ + Sbjct: 150 DTHRKIMADSVINLVERY 167 >gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acidaminophilum] Length = 157 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 5/156 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+EE+ +++VI+ Y A++P+L AQ+ G V+ + ++ L++ + Sbjct: 6 FTEENFKKLDQVIAEYKGK--PGALMPVLHEAQKIFGCVALEVQKKISEGLNIPLAEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGTLSWE 136 +ATFY+QF L P G V VC T C ++G + +I+ VC++ + + ++DG + Sbjct: 64 VATFYSQFSLEPKGDYV-VGVCLGTACYVKGSQSIIDRVCKD-LDLEVGKTSADGKFTVV 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ I +D Y + + + I+ + Sbjct: 122 ATRCVGACGLAPVMTINEDVYGKIVADDVPGILAKY 157 >gi|310658967|ref|YP_003936688.1| hyma protein [Clostridium sticklandii DSM 519] gi|308825745|emb|CBH21783.1| HymA protein [Clostridium sticklandii] Length = 157 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E+ ++ VI+++ Q A++P+L A++ G++S E ++ LD+ + Sbjct: 6 FTQENFARLDLVIAQHKGE--QGALMPVLYEAKKIFGFISIDIQERISKGLDIPLSEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ F G + VC T C ++G +K+I+ K++ + SDG S Sbjct: 64 VASFYSTFSDKQKGENI-IAVCLGTACYVKGSQKIIDKISKKLNIEVGDTTSDGKFSLVP 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V I D Y + ++ I+ + Sbjct: 123 ARCVGACSLAPVVTINADVYGKAKLDDIDSILSNY 157 >gi|254483036|ref|ZP_05096271.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] gi|214036721|gb|EEB77393.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] Length = 152 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++PLL QE G+V +I +A +++++ V + +FY + SPVG R +QVC Sbjct: 14 GGLLPLLHAVQEDLGYVPPESIPAIAEVMNLSAAEVHGVISFYHDLKTSPVG-RHTLQVC 72 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G L + ++ DG+++ E+V C G C +P V I +TY Sbjct: 73 AAESCQAAGGRALEHAAQEQLGIGFGETTDDGSVTLEKVYCLGNCACSPSVRIDNETYAR 132 Query: 160 LTPERLEEIIDAFSTGQG 177 L L +I G+G Sbjct: 133 LDATGLTALIANIGQGEG 150 >gi|303246232|ref|ZP_07332512.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302492295|gb|EFL52167.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 168 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + ++P+L QE+ ++ + VA L + V +ATFY F L+P G + V Sbjct: 27 RHPARLVPILQALQEEYRYLPEEVLSYVATSLRIPEANVFGVATFYAHFALTPKG-KYIV 85 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKD 155 ++C T C ++ ++E R ++ + D + E V C GAC AP+++I +D Sbjct: 86 RLCDGTACHVKHSIPILEALRGRLSLSEEKTTTPDMLFTVETVACLGACGLAPVMVINED 145 Query: 156 TYEDLTPERLEEIIDAF 172 Y +TP+R +ID+ Sbjct: 146 VYGQMTPQRAVSLIDSI 162 >gi|268591138|ref|ZP_06125359.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131] gi|291313364|gb|EFE53817.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131] Length = 183 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 50 RAASIEALKIVQKNRGWVEDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHIIRY 108 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + L +++ +P +DG + C G C P +MI DT+ Sbjct: 109 CDSVVCHITGYQGLEAEIIKQLNIRPGQTTADGRFTLLPTCCLGNCDKGPTMMIDDDTHS 168 Query: 159 DLTPERLEEIIDAF 172 + PE ++++++ + Sbjct: 169 YVQPENIQKLLEQY 182 >gi|188995983|ref|YP_001930234.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931050|gb|ACD65680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 156 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ IPLL Q G++ +E++A L+++ + + TFY+ F+ G ++V Sbjct: 15 KNGFIPLLHSIQNHYGYIPIEFVEILAKRLNLSKAEIWGVITFYSDFKTKKPGKNI-IKV 73 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C+ G ++ + ++K++ DG + EEV C G C P VMI Y Sbjct: 74 CRSESCIANGGLEIQKYLKSKLNINFKETTEDGKFTLEEVFCFGNCGCGPSVMINNKLYG 133 Query: 159 DLTPERLEEIIDAFS 173 ++ ++LEE++ S Sbjct: 134 RVSLKKLEELLKNLS 148 >gi|168184521|ref|ZP_02619185.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795253|ref|YP_002862805.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672342|gb|EDT84303.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229261562|gb|ACQ52595.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum Ba4 str. 657] Length = 159 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNDVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ K++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDILSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T ++++++ + Sbjct: 141 VYGHFTKNEVDKVLEEYG 158 >gi|158321274|ref|YP_001513781.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158141473|gb|ABW19785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 157 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+E+ + EVI + ++ ++P+L AQ+ G +S + ++ + + + Sbjct: 6 LSKENFEKLYEVIKEHKDTK--GPLMPVLHEAQKIFGCISLEVQKEISGKMSVPLSEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+QF L P G + H+ VC T C +RG + +I+ + +SDG S E Sbjct: 64 VVTFYSQFTLEPKG-KYHIGVCLGTACYVRGSQAIIDKVTELTGVEIGKTSSDGRFSLEA 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ + + Y LT + I++ + Sbjct: 123 TRCIGACGLAPVLSVNDEVYGRLTANDIAGILEKY 157 >gi|53804526|ref|YP_113817.1| NADH dehydrogenase subunit E [Methylococcus capsulatus str. Bath] gi|53758287|gb|AAU92578.1| NADH dehydrogenase I, E subunit [Methylococcus capsulatus str. Bath] Length = 157 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +A I L Q GW+S ++ +A +L M+ + IATFY PVG R + C Sbjct: 23 AAAIEALNIVQRSHGWISDELLQEIAELLGMSPAELDSIATFYNLIYRRPVGRRV-IHYC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + C + G E K+ +G + + C GAC AP++MIG +T+ + Sbjct: 82 NSVSCWMLGAEDNRRHLSEKLGIAVGETTGNGEYTLLPIVCLGACDKAPVLMIGDETHFN 141 Query: 160 LTPERLEEII 169 + P RL++I+ Sbjct: 142 VDPARLDDIL 151 >gi|325261422|ref|ZP_08128160.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] gi|324032876|gb|EGB94153.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] Length = 170 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L AQ G++ EV+A+ LD+ V + TFY+ F P G ++V Sbjct: 33 EGSLIQVLHMAQGLYGYLPLEVQEVIADSLDLPLAEVSGVVTFYSFFATQPRGKHT-IRV 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K++E + + + D ++E C G+C AP + I Y+ Sbjct: 92 CLGTACYVRGGKKIVERLKKILDVEIGETTKDRKFTFEVARCIGSCGLAPAMSIDDQVYK 151 Query: 159 DLTPERLEEIIDAF 172 + P++LE+I+ + Sbjct: 152 QVNPDKLEQILQRY 165 >gi|197285617|ref|YP_002151489.1| NADH dehydrogenase subunit E [Proteus mirabilis HI4320] gi|227356120|ref|ZP_03840510.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906] gi|194683104|emb|CAR43661.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis HI4320] gi|227163765|gb|EEI48677.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906] Length = 181 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F ++E + + Y R +A I L Q+ GWV AI +A++L + Sbjct: 25 NTFVLTQEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ P DG Sbjct: 83 DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNILPGQTTPDGRF 141 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +M+ DT+ + PE +E +++ + Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180 >gi|332652332|ref|ZP_08418077.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16] gi|332517478|gb|EGJ47081.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16] Length = 164 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E+I+ Y R Q +I ++ Q + ++S +E++A L++ +V +ATFY F Sbjct: 10 VEEIINSYGCQRHQ--LIAIMQDVQAEFKYLSPQVLELIAQKLNIGVAKVYSVATFYENF 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144 L G + ++VC T C +R + + R + + + S DG + E V C GAC Sbjct: 68 SLEAKG-KYIIKVCDGTACHVRKSQPIYNAIREYLELEDKQKTSADGLFTLETVACLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V + + ++PE +++++ Sbjct: 127 GLAPVVTVNDQVHSKMSPELAIDLLESL 154 >gi|268607921|ref|ZP_06141652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ruminococcus flavefaciens FD-1] Length = 164 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI---RVLEIATFYTQFQLSPVGTRAH 95 + A++P+L +AQE G++ IEV A I D I ++ + TFY QF L P G Sbjct: 31 KGALMPILQKAQEIYGYLP---IEVQAIISDNTGIPLEKIYGVVTFYAQFSLYPKG-EYT 86 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G + + K+ DG S + C GAC AP++ + +D Sbjct: 87 ISVCLGTACYVKGSGDIYNKLQEKLGIGGGECTPDGKFSLDACRCIGACGLAPVLTVNED 146 Query: 156 TYEDLTPERLEEIIDAFS 173 Y LT + +++II ++ Sbjct: 147 VYGRLTVDDVDKIIAKYA 164 >gi|39937321|ref|NP_949597.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009] gi|192293101|ref|YP_001993706.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1] gi|39651179|emb|CAE29702.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris CGA009] gi|192286850|gb|ACF03231.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris TIE-1] Length = 162 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 3/139 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L QE EGWVS A ++ A++L + + +ATFY+Q SPVG + + Sbjct: 22 KAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTPAEIDALATFYSQIFRSPVGDTV-ILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156 C C L G + + + +K+ DG + + C G C AP+ ++G + Sbjct: 81 CDGLSCYLCGGDAVRDAVMSKLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140 Query: 157 YEDLTPERLEEIIDAFSTG 175 LTP+ L+ +I S G Sbjct: 141 VGPLTPDDLDALIGGVSVG 159 >gi|150388473|ref|YP_001318522.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149948335|gb|ABR46863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 169 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I +L +AQ+ G++ R VA L ++ +V + TFY+ F P G + V Sbjct: 36 EGRLIQILHKAQQIFGYLPRDIQLFVARRLGISGAKVNGVITFYSYFTQEPRGEHT-INV 94 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G K+IE ++++ K D + ++V C GAC AP++++ + Y Sbjct: 95 CTGTACFVKGIGKIIEELESQLNIKLGKTTEDMKFTLKDVRCVGACGLAPLIVVDEKVYG 154 Query: 159 DLTPERLEEIIDAF 172 + PE +E+I+ + Sbjct: 155 RVKPEDVEKIMSEY 168 >gi|311108351|ref|YP_003981204.1| NAD-dependent formate dehydrogenase subunit delta [Achromobacter xylosoxidans A8] gi|310763040|gb|ADP18489.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter xylosoxidans A8] Length = 185 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q + G + A++ +A L+++ V + TFY F+ P R ++VC Sbjct: 51 LLPVLHAVQHELGCIPAPAVQTIAEALNLSRAEVHGVITFYPHFRSEPAA-RHTLEVCRA 109 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L R + H NS +G + E V C G C +P VMI Y + Sbjct: 110 EACQAMGGEHLAAHARTALGCD-FHANSRNGDFTLEPVYCLGLCAQSPAVMIDGRPYARV 168 Query: 161 TPERLEEII 169 TPE+L+ ++ Sbjct: 169 TPEKLDRLL 177 >gi|168180427|ref|ZP_02615091.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|170756016|ref|YP_001781397.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|170758313|ref|YP_001787174.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169121228|gb|ACA45064.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B1 str. Okra] gi|169405302|gb|ACA53713.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A3 str. Loch Maree] gi|182668883|gb|EDT80861.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] Length = 159 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ K++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T ++++++ + Sbjct: 141 VYGHFTKNEVDKVLEEYG 158 >gi|187779550|ref|ZP_02996023.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC 15579] gi|187773175|gb|EDU36977.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC 15579] Length = 159 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ K++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T ++++++ + Sbjct: 141 VYGHFTKNEVDKVLEEYG 158 >gi|206901474|ref|YP_002251394.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum H-6-12] gi|206740577|gb|ACI19635.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++ +P R +I +L Q + +++ I+ A L + V +A+FY+ F Sbjct: 6 KILESFP--RDPDYIIEILHELQNRNPYNYLTPEDIKACAEYLGLPVSYVEGVASFYSMF 63 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R +++C + PC L G E L+E K++ K D + E C G C Sbjct: 64 SLKPRG-RYVIRLCDSPPCHLVGSESLLEYLEKKLNIKVGETTEDKLFTLELTSCLGVCA 122 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP +MI + Y +LT E++++I++ Sbjct: 123 VAPAMMINDEVYGNLTFEKIDKILE 147 >gi|326201301|ref|ZP_08191173.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988869|gb|EGD49693.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 157 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 VN +++++ ++ S +I +L Q + ++ + VA L++ ++ +ATFY Sbjct: 8 LVNGILNKHDNNK--SHLIAVLQEIQNEYKYLPEDVLNYVAEKLEINLSKIFSVATFYEN 65 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGA 143 F L P G + ++VC T C +R ++ R ++ + H D + E V C GA Sbjct: 66 FSLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSESKHTTDDKLFTVETVSCLGA 124 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP++ I Y +TP+ EII Sbjct: 125 CGLAPVITINDKVYAKMTPDSTIEIIKTL 153 >gi|194288742|ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus taiwanensis LMG 19424] gi|193222577|emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus taiwanensis LMG 19424] Length = 181 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q+ +G++ A+ V+A L+++ V + TFY F+ P G R VQVC Sbjct: 35 GALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVC 93 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G L E + + ++DG ++ E V C G C P VM+G+ + Sbjct: 94 RAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQLHGY 153 Query: 160 LTPERLEEII 169 + R + ++ Sbjct: 154 VDAARFDALV 163 >gi|326791481|ref|YP_004309302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542245|gb|ADZ84104.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 165 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 82/149 (55%), Gaps = 8/149 (5%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++NE+ P + + A+I +L +AQ G++ + V L++ +V + +FY+ Sbjct: 21 FINEL-----PEK-KGALIAVLHKAQGLFGYLPKEVQMFVGEKLNIPVSQVYGVVSFYSF 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F ++P G + + VC T C +RG +K+++ + ++ + +DG S + + C GAC Sbjct: 75 FTMTPKG-KYPISVCLGTACYVRGADKVLDAFKKELGIEVGQTTADGRFSLDALRCVGAC 133 Query: 145 VNAPMVMIGKDTYEDL-TPERLEEIIDAF 172 AP+V+IG+ Y + + E +++I+ + Sbjct: 134 GLAPVVLIGEKVYGRIGSAEEVKKILSEY 162 >gi|83590555|ref|YP_430564.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Moorella thermoacetica ATCC 39073] gi|83573469|gb|ABC20021.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073] Length = 157 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 SA+I +L ++QE G++ R +A+ L ++ +V + +FY F P G + V VC Sbjct: 25 SALIEVLHQSQELVGYLPRNVQVAIADGLGLSLSQVYSVVSFYNHFTTKPKG-KYQVSVC 83 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++E ++ K +DG + +V C G C P++ + + + Sbjct: 84 MGTACFVKGAPAILERLEQELGTKVGDTTADGRFTINQVRCLGCCALGPVMTVNQKAHGR 143 Query: 160 LTPERLEEIIDAF 172 LTP+ EI+ + Sbjct: 144 LTPDTALEILKEY 156 >gi|283778530|ref|YP_003369285.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi DSM 6068] gi|283436983|gb|ADB15425.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi DSM 6068] Length = 166 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +EE + I RYP Q+ +P L E+ +V A+ +A +L++ Sbjct: 6 PEKPVLTEEMIAEIKAFIPRYPSK--QAVTLPALHIVYEKLRYVPLTAVVEIARLLELHP 63 Query: 73 IRVLEIATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +V + +FY F Q P G + + VC + C LRG ++L+E +K+ P +DG Sbjct: 64 SQVQDTLSFYGYFPQKKPCG-KTRMWVCRSISCALRGADELLEHLSHKLDVHPGETTADG 122 Query: 132 TLSWEEVECQGACVNAPMVM 151 ++ E EC GAC +AP ++ Sbjct: 123 KITLEYAECLGACEHAPCIL 142 >gi|270307814|ref|YP_003329872.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp. VS] gi|270153706|gb|ACZ61544.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp. VS] Length = 154 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+S Y R +IP+L+ Q + ++SR ++ VA + + V IATFY+QF+L Sbjct: 12 VLSLYEAKR--ENLIPILLAFQRKFSYLSRDMMQSVAVYIGVPESSVYNIATFYSQFRLE 69 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G E+L+ ++ K D +S + + C G C AP Sbjct: 70 PPGIH-KVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + Y L L I+ Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149 >gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch sediment'] Length = 710 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+++P R ++ ++P L AQ EGW+S ++ VA L + V +A Y +F Sbjct: 9 LRTLIAQFP--RERTWLLPALQTAQRAEGWLSPESLATVALHLRVPQSEVYGVAGHYPEF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L+ G+R V+VC C ++G L+ +N++ + D +++ EE +C C Sbjct: 67 RLTKPGSRL-VRVCTGVSCRIQGGLTLLHALQNRLGLTVGETSQDHSVTLEEADCLFRCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP+V + Y L +RL+ I + Sbjct: 126 MAPVVEVDHRCYGRLDTDRLDSIFN 150 >gi|326567653|gb|EGE17761.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 12P80B1] Length = 169 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG Sbjct: 32 YPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEGVATFFNRIYRLPVG- 88 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C L G E L+ + ++ + +DG + + C G C V+I Sbjct: 89 RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DTY + P + +++ + Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168 >gi|170076826|ref|YP_001733464.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus sp. PCC 7002] gi|169884495|gb|ACA98208.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus sp. PCC 7002] Length = 163 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G V V Sbjct: 27 QDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHTCV-V 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C T C ++G ++L++ +H KP D +S C GAC AP V+ Sbjct: 86 CLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVV 138 >gi|33600309|ref|NP_887869.1| formate dehydrogenase subunit gamma [Bordetella bronchiseptica RB50] gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella bronchiseptica RB50] Length = 185 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P G R +++C Sbjct: 50 ALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLEICR 108 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G + L R ++ + +DG+ + E V C G C +P VMI + + Sbjct: 109 AESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPHARV 168 Query: 161 TPERLEEII 169 TP +L+ ++ Sbjct: 169 TPAKLDRLL 177 >gi|114567344|ref|YP_754498.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338279|gb|ABI69127.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+IS Y +I Q++ ++ A+ A + D+ + +ATFY+ ++ Sbjct: 6 EIISAY--KEVPGGIIEAYHAVQKEYSYIPEDAVVYAAQVFDIPEAKAYGVATFYSYLKV 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G +++C + PC + G +K++ ++ K DG + E EC G C Sbjct: 64 GPRGKNV-IRICESAPCHIAGADKVVAALEKELGIKMGETTPDGKFTLEFAECVGQCQAT 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++ I Y D+T +++ I+ + Sbjct: 123 PVITINSQPYGDVTADKIAAILTEY 147 >gi|195952595|ref|YP_002120885.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932207|gb|ACG56907.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp. Y04AAS1] Length = 154 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 +Y S+ + A++ L QE G + A+E ++ ILD+ + + FY F Sbjct: 15 KYFGSK-EEAMLLSLHSIQEHLGHIPEEALEELSEILDIPLHHIKGVVAFYEMFDTGE-K 72 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VC + C L K+ + + +P DG EV+C GAC AP+ M Sbjct: 73 AKHRIYVCNSIVCYLLKSHKVFNAVKELLGIEPGQVTRDGMFKLVEVQCLGACSEAPVFM 132 Query: 152 IGKDTYEDLTPERLEEIIDAFS 173 + DTY + E+L EI+ +S Sbjct: 133 VDNDTYRYESKEKLHEILAKYS 154 >gi|257066579|ref|YP_003152835.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus prevotii DSM 20548] gi|256798459|gb|ACV29114.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus prevotii DSM 20548] Length = 164 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 V+P L + Q ++ ++++A L++ + +ATFY+ F L P G + VC Sbjct: 29 VMPALQKCQNVFSYIPEPVVDLMALKLNVPSSEIYGVATFYSHFSLKPKGEH-DICVCLG 87 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDL 160 T C + G +K+++ ++ + DG +S E C G C +AP+VMI G+D E + Sbjct: 88 TACYVNGSDKILKSLAEELGVEVGDTTEDGKISLSEARCVGECGSAPVVMIDGEDFVEKV 147 Query: 161 TPERLEEII 169 P ++ II Sbjct: 148 DPSQVHNII 156 >gi|296112935|ref|YP_003626873.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4] gi|295920629|gb|ADG60980.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4] gi|326569468|gb|EGE19528.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC8] gi|326577452|gb|EGE27336.1| NADH dehydrogenase subunit E [Moraxella catarrhalis O35E] Length = 169 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG Sbjct: 32 YPQAR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C L G E L+ + ++ + +DG + + C G C V+I Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DTY + P + +++ + Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168 >gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synechococcus sp. PCC 7002] Length = 170 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G V V Sbjct: 34 QDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHTCV-V 92 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C T C ++G ++L++ +H KP D +S C GAC AP V+ Sbjct: 93 CLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVV 145 >gi|220929713|ref|YP_002506622.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulolyticum H10] gi|220000041|gb|ACL76642.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulolyticum H10] Length = 157 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V+ V+S+Y + S +I +L Q + ++ ++ VA LD+ ++ +ATFY Sbjct: 8 LVDGVLSKYDNHK--SHLIAVLQEIQNEYKYLPEDVLKYVAEKLDINLSKIFSVATFYEN 65 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGA 143 F L P G + ++VC T C +R ++ R ++ H D + E V C GA Sbjct: 66 FSLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSDNKHTTDDMLFTVETVSCLGA 124 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEII 169 C AP++ I + +TP+ E+I Sbjct: 125 CGLAPVITINDKVHAKMTPDSTIELI 150 >gi|166032052|ref|ZP_02234881.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC 27755] gi|166027775|gb|EDR46532.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC 27755] Length = 162 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R + ++IP++ QE+ ++ + VA + ++ + +A+FY F G Sbjct: 23 TREERSLIPIIQDIQEEYRYLPPELLSYVAGKIGISEAKAFSVASFYENFSFEAKGKYV- 81 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC T C +R ++E ++ K H D + E V C GAC AP VMI Sbjct: 82 IKVCDGTACHVRKSIPILEGLYKELGLNKDKHTTDDQLFTVETVSCLGACGLAPAVMIND 141 Query: 155 DTYEDLTPERLEEII 169 + Y +TPE++ E+I Sbjct: 142 EVYGKMTPEKMSELI 156 >gi|169832067|ref|YP_001718049.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638911|gb|ACA60417.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 184 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E + + ++++I RY +I +L +AQE G++SR VA + + V Sbjct: 1 MNVEERNYLVLDKIIERYGDR--PGGLIRVLYKAQELFGYLSRDVQTHVAEKMCLPVGHV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF +P G V+VC T C ++ + ++ R + +P +DG + Sbjct: 59 HGVATFYSQFVTAPQGKNV-VRVCMGTACYVKNAQDILNRFRELLGVEPDETTADGLFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ + + + L+ + ++D + Sbjct: 118 RTTRCIGACSLAPLLTVNESVHGHLSVYDVARLVDRY 154 >gi|73748524|ref|YP_307763.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147669305|ref|YP_001214123.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|289432571|ref|YP_003462444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146270253|gb|ABQ17245.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|288946291|gb|ADC73988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 157 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++++Y + ++ +L Q + ++ R A+E V+ L + +V +ATF+ F Sbjct: 13 VKDILNKYAKDK--GMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKAF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + V VC T C +RG K+++ K+ D S + V C GAC Sbjct: 71 SLKPKGKHS-VHVCMGTACHVRGASKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGACA 129 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 P+V++ ++T E+++ +I+ Sbjct: 130 LGPVVVVDGQYVGNMTTEKVKPLIEG 155 >gi|239627949|ref|ZP_04670980.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47_FAA] gi|239518095|gb|EEQ57961.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47FAA] Length = 171 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 1/139 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L AQ G++ +V+A+ L++ V + TFY+ F P G ++V Sbjct: 32 EGSLIQVLHMAQGIYGYLPLEVQKVIADALEVPLAEVSGVVTFYSFFSTQPRGEHT-IRV 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +K++E + + + +D ++E C GAC AP + I Y+ Sbjct: 91 CLGTACYVRGGKKIVERIKELLDVEIGETTADRKFTFEVARCIGACGLAPAMSIDDQVYK 150 Query: 159 DLTPERLEEIIDAFSTGQG 177 + P++LE+I++ + +G Sbjct: 151 QVNPDKLEQILERYYEEEG 169 >gi|153939211|ref|YP_001391109.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152935107|gb|ABS40605.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319155|gb|ADF99532.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 159 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ K++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T + ++++ + Sbjct: 141 VYGHFTKNEVNKVLEEYG 158 >gi|306821644|ref|ZP_07455242.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550389|gb|EFM38382.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 179 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P+L AQ G++ + +E++++ L + +ATFY+QF P G A + V Sbjct: 42 RGAVMPILQEAQRIFGYIPKEIVEIMSHRLGKHSSEIYGVATFYSQFTFIPKGKYA-ISV 100 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G +++E ++ K D S E C G C AP+V + Y Sbjct: 101 CLGTACYVNGANEILEEFEKQLKIKKGETTKDLLFSIVETRCVGECAQAPVVTVNDKVYP 160 Query: 159 DLTPERLEEIIDAF 172 + +++++ + Sbjct: 161 KFSVSDVDDLLTEY 174 >gi|289432337|ref|YP_003462210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|288946057|gb|ADC73754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 154 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L P G V VC Sbjct: 23 LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIH-RVHVCRG 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G E+L+ ++ K D +S + + C G C AP + + Y L Sbjct: 82 TACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLN 141 Query: 162 PERLEEII 169 L I+ Sbjct: 142 GSSLNRIL 149 >gi|33595782|ref|NP_883425.1| formate dehydrogenase subunit gamma [Bordetella parapertussis 12822] gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella parapertussis] Length = 163 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P G R +++C Sbjct: 28 ALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLEICR 86 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G + L R ++ + +DG+ + E V C G C +P VMI + + Sbjct: 87 AESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPHARV 146 Query: 161 TPERLEEII 169 TP +L+ ++ Sbjct: 147 TPAKLDRLL 155 >gi|46446197|ref|YP_007562.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus Protochlamydia amoebophila UWE25] gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus Protochlamydia amoebophila UWE25] Length = 159 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R SA+IP L AQ ++G++ +A + D+ V I TFY F PVG Sbjct: 5 YPNKR--SALIPALHLAQAEKGYLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVGK 62 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + VC CMLRG + + K+H P DG + EC AC AP++++ Sbjct: 63 HV-IHVCKNISCMLRGADGFLARLCQKMHISPGETTQDGEFTVIASECLAACDKAPVMIV 121 >gi|226949093|ref|YP_002804184.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|226840738|gb|ACO83404.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 159 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F P G Sbjct: 22 SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G ++ K++ K DG + + + C GAC AP+V I Sbjct: 81 INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140 Query: 156 TYEDLTPERLEEIIDAFS 173 Y T + ++++ + Sbjct: 141 VYGHFTKNEVAKVLEEYG 158 >gi|326572770|gb|EGE22756.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC7] Length = 169 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG Sbjct: 32 YPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C L G E L+ + ++ + +DG + + C G C V+I Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DTY + P + +++ + Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168 >gi|75910849|ref|YP_325145.1| bidirectional hydrogenase complex protein HoxE [Anabaena variabilis ATCC 29413] gi|75704574|gb|ABA24250.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Anabaena variabilis ATCC 29413] Length = 164 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + +A+ L + RV +ATFY F L+P G + V V Sbjct: 31 QDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCV-V 89 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + ++ +DG LS C GAC AP V+ Sbjct: 90 CTGTACYVKGAQAILTDLEKSTRIHAGETTADGQLSLLTARCLGACGIAPAVVFDGKVLG 149 Query: 159 DLTPERLEE 167 + TPE + E Sbjct: 150 NQTPESVSE 158 >gi|73748288|ref|YP_307527.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147669068|ref|YP_001213886.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146270016|gb|ABQ17008.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1] Length = 154 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L P G V VC Sbjct: 23 LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIH-RVHVCRG 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G E+L+ ++ K D +S + + C G C AP + + Y L Sbjct: 82 TACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAPTLEVDGKLYTRLN 141 Query: 162 PERLEEII 169 L I+ Sbjct: 142 GSSLNRIL 149 >gi|325294616|ref|YP_004281130.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065064|gb|ADY73071.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 167 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 VI +L QE+ ++S+ A+E V+ L++ ++ IATFY+ F L PVG + VC Sbjct: 24 VISILEDIQEKNKYLSKEALEYVSEKLNIPLSQLYSIATFYSFFNLKPVGKHI-ISVCTG 82 Query: 102 TPCMLRGCEKLIEVCRN--KIHQKPLHRNS-------DGTLSWEEVECQGACVNAPMVMI 152 TPC ++G +LI+ I Q + +S D + S C G C AP++ I Sbjct: 83 TPCHVKGAPQLIKTLERLLGIKQDEVSEDSKFFLTTHDRSFSLTAARCFGCCSMAPVIRI 142 Query: 153 GKDTYEDLTPERLEEIIDAF 172 Y +T L +I+ + Sbjct: 143 DDKIYGYVTVNDLPKILKEY 162 >gi|270308047|ref|YP_003330105.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] gi|270153939|gb|ACZ61777.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] Length = 157 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++++Y + ++ +L Q + ++ R A+E V+ L + +V +ATF+ F Sbjct: 13 VKDILNKYAKDK--GMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKAF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + + VC T C +RG K+++ K+ D S + V C GAC Sbjct: 71 SLKPKGKHS-IHVCMGTACHVRGANKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGACA 129 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 P+V++ ++T E+++ +I+ Sbjct: 130 LGPVVVVDGQYMGNMTTEKVKPLIEG 155 >gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P++ + S+ V+ +++RY + ++P+L QE G++ + ++ L++ Sbjct: 10 PAASALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCKLNIPG 67 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V + +FY+ + P G ++ C + PC ++G + L+E + ++ H DG Sbjct: 68 SDVFGVMSFYSMYTWRPKGKYV-IRFCESPPCHIQGADNLLEFTQAELGVPLKHTTKDGL 126 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + E C G C AP + I + + +LT +++ +I+ + G+ Sbjct: 127 FTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGK 170 >gi|298384457|ref|ZP_06994017.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14] gi|298262736|gb|EFI05600.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14] Length = 303 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L AQ G++ ++A+ L + +V + TFYT F ++P G + VC Sbjct: 28 LINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 T C +RG EKL+E + + + DG S + + C GAC AP+VMIG+ Sbjct: 87 TACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGACGLAPVVMIGE 139 >gi|326565197|gb|EGE15384.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 103P14B1] gi|326574010|gb|EGE23959.1| NADH dehydrogenase subunit E [Moraxella catarrhalis CO72] Length = 169 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG Sbjct: 32 YPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C L G E L+ + ++ + +DG + + C G C V+I Sbjct: 89 RHVILVCDSIACYLTGYEMLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DTY + P + +++ + Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168 >gi|91775075|ref|YP_544831.1| formate dehydrogenase subunit gamma [Methylobacillus flagellatus KT] gi|91709062|gb|ABE48990.1| formate dehydrogenase gamma subunit [Methylobacillus flagellatus KT] Length = 156 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++PLL Q+ ++ ++A L+++ V + TFY F+ P G R +QVC Sbjct: 21 ALMPLLHAIQDDLSYIPEECYGLIAKALNLSVAEVHGVVTFYHHFRTRPPG-RHVLQVCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C GC L ++ + SDG+++ E V C G C +P +M+ + Y + Sbjct: 80 AESCQAMGCGALESHVKSSLGIDYHETTSDGSITLEPVYCLGNCACSPAIMLDDEIYGRV 139 Query: 161 TPERLEEII 169 +P+++E ++ Sbjct: 140 SPQQVESLL 148 >gi|57234507|ref|YP_181466.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 159 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++ +Y + ++ +L Q + ++ R A+E V+ L + +V +ATF+ F Sbjct: 13 VKNILDKYAKDK--GMLVAILQDIQTEFNYLPRPALETVSEGLGVPMSQVYSVATFFKAF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + + VC T C +RG K+++ K+ +D S + V C GAC Sbjct: 71 SLKPKGKHS-IHVCMGTACHVRGANKILDKLVEKLGCCAGENTADMKFSLDAVNCVGACA 129 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 P+V++ ++T E+++ +I+ Sbjct: 130 LGPVVVVDGQYVGNMTTEKVKPLIEG 155 >gi|302387718|ref|YP_003823540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium saccharolyticum WM1] gi|302198346|gb|ADL05917.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium saccharolyticum WM1] Length = 164 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q F+ ++E I + EVI+ ++ +++P++ +AQE G++ IEV I D Sbjct: 6 QGVQFNGTKEQEIALKEVIALLRDTK--GSLMPIMQKAQEIYGYLP---IEVQTMISDET 60 Query: 72 YI---RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 I ++ +ATFY QF L P G + + VC T C ++G + + Sbjct: 61 GIPLEKIYGVATFYAQFALQPKG-KYQISVCLGTACYVKGSGDIFHKLEEILGITNGECT 119 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++M+ + Y L+ + + +I+ + Sbjct: 120 PDGKFSLDSCRCVGACGLAPVMMVNGEVYGRLSADDVPDILAKY 163 >gi|325274758|ref|ZP_08140794.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51] gi|324100102|gb|EGB97912.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51] Length = 160 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q ++ AA+ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPMLHAIQHDLCYIPDAAVPELAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG E L R ++ ++DG +S V C GAC +P + + + L Sbjct: 83 AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142 Query: 161 TPERLEEIIDA 171 TPERL +++A Sbjct: 143 TPERLRALVNA 153 >gi|118473363|ref|YP_884575.1| formate dehydrogenase, subunit gamma [Mycobacterium smegmatis str. MC2 155] gi|118174650|gb|ABK75546.1| formate dehydrogenase, gamma subunit [Mycobacterium smegmatis str. MC2 155] Length = 161 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A V E+ + + R ++P+L QE+ G V A+ V+A L+++ V + TFY Sbjct: 12 ATLVREIAADHRDHR--GPLLPILHAVQERLGCVPAEAVPVLAEELNLSRADVHGVITFY 69 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F+ P G R V+VC C G +L+ +++ + DGTL+ E+V C G Sbjct: 70 HDFRSEPAG-RTTVRVCRAEACQALGASRLVAHLQDRHGVQLGDATDDGTLTAEQVFCLG 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C P + Y L RL +ID+ T Sbjct: 129 NCALGPSAQVDGRLYGRLDEARLSALIDSAVT 160 >gi|326561159|gb|EGE11524.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 7169] Length = 169 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R +AV+ L Q++ GWV+ A + +AN+L ++ V +ATF+ + PVG Sbjct: 32 YPQPR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C L G E L+ + ++ + +DG + + C G C V+I Sbjct: 89 RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DTY + P + +++ + Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168 >gi|293607183|ref|ZP_06689525.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter piechaudii ATCC 43553] gi|292814517|gb|EFF73656.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter piechaudii ATCC 43553] Length = 185 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q + G + A++ +A L+++ V + TFY F+ P R V+VC Sbjct: 51 LLPVLHEVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRSEPAA-RHTVEVCRA 109 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G ++L R ++ +DG + E V C G C +P VMI + +T Sbjct: 110 ESCQAMGADQLAAHARAQLGCDFHASTADGNFTLEPVYCLGLCAQSPAVMIDGQPHARVT 169 Query: 162 PERLEEII 169 P +L+ ++ Sbjct: 170 PAKLDRLL 177 >gi|225849103|ref|YP_002729267.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644487|gb|ACN99537.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense Az-Fu1] Length = 160 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++ + R+P + AVI L + ++ ++ +++ L + + I +FY F Sbjct: 14 IDKYLERFPVK--EQAVIQSLHLIYSKYRDITLEHMQELSDYLQVPLAHIEGIVSFYDMF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 ++ R H++VC PC + GC+KL+E+ +K + +G E VEC G+C Sbjct: 72 RVKR-NARHHIRVCKNLPCHIMGCKKLLELFEKLTGEKANEESKNGRFYIETVECIGSCS 130 Query: 146 NAPMVMIGKDTYE--DLTPERLEEIIDAFS 173 AP MI D Y+ + +L EI+ ++ Sbjct: 131 VAPAFMIDDDLYDGTKINEGKLNEILSKYT 160 >gi|218961479|ref|YP_001741254.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma [Candidatus Cloacamonas acidaminovorans] gi|167730136|emb|CAO81048.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma [Candidatus Cloacamonas acidaminovorans] Length = 160 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 74/135 (54%), Gaps = 2/135 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ +I +L AQE G++ E +A L++ ++ + TFY F ++P G + ++ V Sbjct: 26 RNPLIEILRSAQEIFGYLPVEVQEFIAQELNIPVNQIYGVVTFYNFFTMTPRG-KYNLNV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +L+++ ++ + DG + V C GAC AP+ +IG++TY Sbjct: 85 CLGTACFVKGAPRLVQMLSEELGIQMGETTKDGIFTMSAVRCVGACSLAPVFVIGEETYG 144 Query: 159 DL-TPERLEEIIDAF 172 + + +++ EI+ + Sbjct: 145 RIDSKDKIAEILKRY 159 >gi|316935782|ref|YP_004110764.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] gi|315603496|gb|ADU46031.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] Length = 162 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L QE EGWVS A ++ A++L + + +ATFY+Q SPVG + + Sbjct: 22 KAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTAAEIDALATFYSQIFRSPVGDTV-ILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156 C C L G + + + K+ DG + + C G C AP+ ++G + Sbjct: 81 CDGLSCYLCGGDAVRDAVMEKLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140 Query: 157 YEDLTPERLEEIIDAFSTG 175 LTP+ L+ +I + G Sbjct: 141 VGPLTPDDLDALIGGAAVG 159 >gi|300245947|gb|ADJ94031.1| putative benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 129 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + I TFY QF+L P+G +QVC T C L EK+ E + + K H + DG + Sbjct: 9 LYSIVTFYAQFRLEPIGDNL-IQVCHGTACHLADAEKISEAIQLESGAKSGHTSPDGKFT 67 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 E+V C G C P++ + ++TY ++PE ++I Sbjct: 68 VEKVACLGCCSLGPVITVNEETYARMSPEAARKLI 102 >gi|110589188|gb|ABG77103.1| NADH dehydrogenase I E subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 123 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 FS E ++ +++YP QSAV+ L Q+ G W++ A ++ VA LDMA I V Sbjct: 13 FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVY 72 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 E+ATFY+ ++L PVG + + +C CM+ ++++E Sbjct: 73 EVATFYSMYELKPVG-KHKICICTNVSCMINNSDRIVE 109 >gi|254426024|ref|ZP_05039741.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Synechococcus sp. PCC 7335] gi|196188447|gb|EDX83412.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Synechococcus sp. PCC 7335] Length = 192 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L +AQE ++S + VA L + +V +ATFY F L+P G + VC Sbjct: 48 ALIEVLHKAQELFDYLSPTLLAEVAKSLQLPLSQVYGVATFYHFFSLAPSGHHS-CTVCL 106 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G +L+ ++ +P +DG +S C GAC AP+V++ Sbjct: 107 GTACYVKGAAQLLAKLEQRLGIQPGQTTADGEMSLSTARCLGACGIAPVVVVDDAIAGHQ 166 Query: 161 TPERLEEIIDA 171 T E + + IDA Sbjct: 167 TTETIIQRIDA 177 >gi|226327880|ref|ZP_03803398.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198] gi|225203584|gb|EEG85938.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198] Length = 181 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+ GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 48 RAASIEALKIVQKNRGWVEDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHIIRF 106 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + ++ P DG + C G C P +M+ DT+ Sbjct: 107 CDSVVCHITGYQGIQAAIEKHLNIIPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDDDTHS 166 Query: 159 DLTPERLEEIIDAF 172 + PE +E +++ + Sbjct: 167 FVKPEEIETLLEQY 180 >gi|253579945|ref|ZP_04857213.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA] gi|251848944|gb|EES76906.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA] Length = 160 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY F Sbjct: 11 DEIIAFY--GKKPASLIPIMQDIQGVYRYLPEELLTYVAEQIGVTEAKAFSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACV 145 G + ++VC T C +R ++E K+ + +D + + E V C GAC Sbjct: 69 FDAKG-KYVIKVCDGTACHVRKSIPVLEELYKKLGLSKTKKTTDDMMFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP +M+ ++ Y +TPE+ +E+ID G+ Sbjct: 128 LAPTMMVNEEVYPRMTPEKADELIDKLRGGE 158 >gi|158340817|ref|YP_001521985.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa subunit, chain E [Acaryochloris marina MBIC11017] gi|158311058|gb|ABW32671.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa subunit, chain E [Acaryochloris marina MBIC11017] Length = 177 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +++I +L +AQE G++ R + +A+ L + +V +ATFY F L+P G V VC Sbjct: 36 NSLIEVLHKAQELFGYLERDILLHIAHSLKLPPSQVYGVATFYHFFSLTPSGRHTCV-VC 94 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154 T C ++G L+ H + DG LS C GAC +AP V ++G Sbjct: 95 MGTACFVKGAASLLSTVEQIAHIQAGETTQDGGLSLSTARCLGACGSAPAVVLDGQVVGY 154 Query: 155 DTYEDLTPERLEEIID 170 T E+L +++ +++D Sbjct: 155 QTSENLG-QQVTQMMD 169 >gi|255505333|ref|ZP_05345528.3| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM 14469] gi|255268421|gb|EET61626.1| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM 14469] Length = 172 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY F Sbjct: 23 DEIIAFY--GKKPASLIPIMQDIQGVYRYLPGELLTYVAGQIGITEAKAFSVATFYENFS 80 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G + ++VC T C +R ++E + ++ H D + E V C GAC Sbjct: 81 FEPKG-KYIIKVCDGTACHVRKSAPILEAFQKELGLSAKKHTTDDMLFTVETVSCLGACG 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AP VM+ +D + +TPE+ ++I Q D Sbjct: 140 LAPTVMVNEDVHPKMTPEKAIDLIRELRGDQHD 172 >gi|124268892|ref|YP_001022896.1| NAD-dependent formate dehydrogenase subunit gamma [Methylibium petroleiphilum PM1] gi|124261667|gb|ABM96661.1| NAD-dependent formate dehydrogenase gamma subunit [Methylibium petroleiphilum PM1] Length = 161 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+Q G + A+ +A L+++ V + T+Y F+ P G R +QVC Sbjct: 21 ALLPILHEVQDQLGCIPADAVPEIAGALNLSRAEVHGVITYYHHFRGEPAG-RHVIQVCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ ++ + +SDG + E V C G C ++P ++I + + + Sbjct: 80 AEACQALGAEALLTHAERRLVCRSHASSSDGRYTLEPVFCLGLCASSPAIVIDERLHARI 139 Query: 161 TPERLEEIIDAF 172 +P + +I A Sbjct: 140 SPAAFDRLIGAL 151 >gi|218244990|ref|YP_002370361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8801] gi|218165468|gb|ACK64205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8801] Length = 179 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 1/125 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ +E +A L + RV +ATFY F L P G + + V Sbjct: 40 QDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPSGEHSCI-V 98 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ K D + C GAC AP V+ + Sbjct: 99 CMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDGEVAG 158 Query: 159 DLTPE 163 + PE Sbjct: 159 KVEPE 163 >gi|218780115|ref|YP_002431433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761499|gb|ACL03965.1| Putative NADH:ubiquinone oxidoreductase 24 kD subunit, NuoE [Desulfatibacillum alkenivorans AK-01] Length = 154 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + + +I YP Q +++ +L QE G++S ++ + + + +AT Sbjct: 2 QQTVDIESIIDHYPG--VQESMVFILQDIQEAFGYISLENMQAACDHVGVPLTHAYSMAT 59 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F+L PVG + VC T C L+G ++++ +++ D + E V C Sbjct: 60 FYKSFRLEPVGEHE-IHVCLGTACHLKGGPRIVDELERRLNVHAGATTEDMRYTLETVNC 118 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+V++ K+ +T +++++ + + Sbjct: 119 LGACALAPVVVVDKEYVPKVTAKKIQKTLKTIT 151 >gi|302337011|ref|YP_003802217.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634196|gb|ADK79623.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 162 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 N +I + +R A+IP+L AQ G++ + ++ ++ L + Y V + FY+ F Sbjct: 14 NAIIDSFLDTR--GALIPVLQNAQNLFGYLDQEVLKQISRRLQIPYSEVAGVVGFYSYFS 71 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G V+VC T C +RG ++++ ++ + D S E C GAC Sbjct: 72 TVPRGEHI-VRVCLGTACYVRGGKEVLSALQDVLGIDVGETTEDRVFSLEIGRCFGACGL 130 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174 +P+VMI +D ++ + P + +I+ + T Sbjct: 131 SPVVMIDEDVHQRVKPATVRDILFPYRT 158 >gi|17228246|ref|NP_484794.1| bidirectional hydrogenase complex protein HoxE [Nostoc sp. PCC 7120] gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [Nostoc sp. PCC 7120] Length = 164 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + +A+ L + RV +ATFY F L+P G + V V Sbjct: 31 QDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCV-V 89 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G ++ +DG LS C GAC AP V+ Sbjct: 90 CTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTARCLGACGIAPAVVFDGKVLG 149 Query: 159 DLTPERLEE 167 + TPE + E Sbjct: 150 NQTPESVNE 158 >gi|319760613|ref|YP_004124551.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer str. BVAF] gi|318039327|gb|ADV33877.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer str. BVAF] Length = 155 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 Y +R +A I L Q+ GWVS AI ++A IL ++ V +ATFY Q PVG Sbjct: 18 YESTR--AASIEALKIVQKNYGWVSDDAIVLIAQILHISVSDVEGVATFYNQIFRQPVGQ 75 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++ C + C + GC + + ++ K + D + C G C +P++MI Sbjct: 76 NI-IRYCDSIVCYVTGCNAIKKTLECILNIKIGNTTKDNKFTLLPTCCLGMCDKSPVIMI 134 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +D Y + ++ +I++ + Sbjct: 135 NEDVYSHIVLSKINKILNLY 154 >gi|330809408|ref|YP_004353870.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377516|gb|AEA68866.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 160 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q G+V +A+ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 24 ALLPILHAIQAGCGYVPDSAVPEIAHALNLSQAEVRGVISFYHDFRTTPPA-RHTLRLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L R ++ ++DG++S V C GACV +P + + + + + Sbjct: 83 AESCKSMGAETLAAQLREQLALDDHGTSADGSISLRPVYCLGACVCSPALELDGELHARI 142 Query: 161 TPERLEEIID 170 TPERL ++++ Sbjct: 143 TPERLRQLVN 152 >gi|51246060|ref|YP_065944.1| bidirectional hydrogenase complex protein HoxE [Desulfotalea psychrophila LSv54] gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (ubiquinone) I, chain E [Desulfotalea psychrophila LSv54] Length = 194 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 1/127 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q G++ R A+E VA+ L + +V +ATFY F L P G V VC Sbjct: 57 ALIETLHTVQNTFGFIDRDAMEYVASGLHVPLSQVYSVATFYHYFTLKPPGEHTCV-VCT 115 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C + G L+E N + P + DG +S C G+C AP + L Sbjct: 116 GTACYVSGSSALLETIHNTVGIDPGETSQDGKVSLLTTRCLGSCGLAPAAVFDGQVAGKL 175 Query: 161 TPERLEE 167 +EE Sbjct: 176 QSATIEE 182 >gi|269119250|ref|YP_003307427.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268613128|gb|ACZ07496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 158 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++I +L +AQ G++ R E VA L+ + V + +FY+ F + P G A V V Sbjct: 25 KGSLISVLHKAQGIFGYLPREIQEYVAEKLNESLANVYGVVSFYSFFTMVPKGEHA-VSV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C T C +RG +K++ + ++ K + DG S + + C GAC AP+V++G Sbjct: 84 CMGTACYVRGADKVLGEFQKELGIKSGETSLDGKFSIDALRCVGACGIAPVVLVG 138 >gi|57234744|ref|YP_181190.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 154 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L+ Q + ++SR ++ V+ + + V IATFY+QF+L P G V VC Sbjct: 23 LIPILLAFQRKFSYLSRDMMQSVSVYVGVPESSVYNIATFYSQFRLEPPGIHK-VHVCRG 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G E+L+ ++ K D +S + + C G C AP + + Y L Sbjct: 82 TACHVMGAERLLRNIEKRLGIKAGETTPDNEISLDTINCAGICGLAPTLEVDGKLYTRLD 141 Query: 162 PERLEEII 169 L I+ Sbjct: 142 GSSLNRIL 149 >gi|332295876|ref|YP_004437799.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332178979|gb|AEE14668.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 156 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 ++I +L QE G++ + +A L+++ ++ + TFY F+L+ + C Sbjct: 22 SLIQILHGTQESIGYLPEEILSYIAEKLNISLSKIYGVVTFYNFFKLTKDAEHV-ITTCL 80 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYED 159 T C ++G EK++ NK++ KP D + + V C G C AP+++I GKD Y Sbjct: 81 GTACYVKGGEKILNALCNKLNIKPNEITKDNKFTVKTVRCVGCCGFAPVMIIDGKDIYGK 140 Query: 160 LTPERLEEIIDAF 172 L+ EI++ + Sbjct: 141 LSENEAIEILERY 153 >gi|317404655|gb|EFV85051.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter xylosoxidans C54] Length = 185 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q + G + A++ +A L+++ V + TFY F+ P G R ++VC Sbjct: 51 LLPVLHAVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRSEPAG-RHTLEVCRA 109 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G E+L R + DG + E V C G C +P VM+ + +T Sbjct: 110 ESCQAMGGEQLAAHARQALGCDFHASTRDGDFTLEPVYCLGLCAQSPAVMLDGQPHARVT 169 Query: 162 PERLEEII 169 P +L+ ++ Sbjct: 170 PAKLDRLL 177 >gi|257058014|ref|YP_003135902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8802] gi|256588180|gb|ACU99066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8802] Length = 179 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 1/125 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ +E +A L + RV +ATFY F L P G + + V Sbjct: 40 QDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPNGEHSCI-V 98 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ + ++ K D + C GAC AP V+ + Sbjct: 99 CMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDGEVAG 158 Query: 159 DLTPE 163 + PE Sbjct: 159 KVEPE 163 >gi|255318319|ref|ZP_05359554.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter radioresistens SK82] gi|262379063|ref|ZP_06072219.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter radioresistens SH164] gi|255304631|gb|EET83813.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter radioresistens SK82] gi|262298520|gb|EEY86433.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter radioresistens SH164] Length = 169 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + I YP +R +A + L Q + GWV A + +A +L ++ + +ATFY + Sbjct: 25 IQHHIGHYPYAR--AASLDALKCVQRRNGWVDDAQLNAIAQLLSISTADLEGVATFYNRI 82 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 PVG R + +C + C L G E L E + ++ + +DG + + C G C Sbjct: 83 YRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCD 141 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P +MI DT+ + ++++++ + Sbjct: 142 KGPTLMIDGDTHGLVEVTSIQQLLEKY 168 >gi|159186285|ref|NP_355959.2| formate dehydrogenase subunit gamma [Agrobacterium tumefaciens str. C58] gi|159141419|gb|AAK88744.2| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens str. C58] Length = 159 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L QE+ G++ +A +++A+ L+++ V + TFY F+ P G R +++C Sbjct: 28 LLPILHAVQEEFGYIPESAKQIIASALNISRAEVHGVVTFYPDFRDHPQG-RHVLKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G E L E +N++ + +DG+++ E V C G C AP +M+ + + L Sbjct: 87 EACQSMGGEPLAETIKNRLGLEWHETAADGSVTLEPVFCLGLCAQAPALMLDGEVHARLD 146 Query: 162 PERLEEII 169 + L I+ Sbjct: 147 DDCLGNIL 154 >gi|90416714|ref|ZP_01224644.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma proteobacterium HTCC2207] gi|90331467|gb|EAS46703.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma proteobacterium HTCC2207] Length = 162 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++ +Y ++ A++PLL Q G+V +A+ ++A L+++ V + +FY F Sbjct: 11 ISALVGQY--TQLPGALLPLLHAIQSDLGYVPDSAVPIIAKGLNLSRAEVHGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +PVG R VQVC C G +L + + +DG ++ E V C G C Sbjct: 69 KTTPVG-RHTVQVCRAEACQSMGSRQLEAHAKQALGIDYGETTADGAVTLEPVYCLGNCA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 +P V I Y + + ++++ T +G Sbjct: 128 CSPSVRIDDAIYARVDTDLFDDLMSGLLTEEG 159 >gi|227499380|ref|ZP_03929491.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius ATCC 35098] gi|227218584|gb|EEI83824.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius ATCC 35098] Length = 163 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P L + Q ++ ++++A L ++ + +ATFY+QF L G + V Sbjct: 26 KGAVMPALQKCQNLFSYIPEPVVDLMALKLGVSSSEIYGVATFYSQFSLKAKGEH-EICV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY- 157 C T C + G +++++ +K+ + + DG ++ E C G C +P+VMI D + Sbjct: 85 CLGTACYVNGADRILKSLSDKLGVEVGDTSQDGKITLSEARCVGECGKSPVVMIDGDEFR 144 Query: 158 EDLTPERLEEIID 170 E++ +++II+ Sbjct: 145 ENVELSDIDDIIN 157 >gi|288959750|ref|YP_003450090.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] gi|288912058|dbj|BAI73546.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] Length = 182 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 1/130 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L QE+ G++ AI ++A L+++ V + +FY +F+ G R ++V Sbjct: 23 RGALLPILHALQEEFGYIDEEAIPLLATELNLSRADVHGVVSFYHEFRREKPG-RHIIKV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G L++ + ++ +DG + E V C G C +P VMI ++ + Sbjct: 82 CRAEACQSMGANALVDHIKTRLQVDFHGTTADGAFTLEPVFCLGNCALSPAVMIDENLHG 141 Query: 159 DLTPERLEEI 168 ++P+R + + Sbjct: 142 RVSPDRFDAL 151 >gi|308271654|emb|CBX28262.1| hypothetical protein N47_G35860 [uncultured Desulfobacterium sp.] Length = 162 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L Q+ ++ AAI +A + + + +ATFY+ F L P G R + +C Sbjct: 32 LIMILQGIQKVYNYLPGAAISYLAVKIGIPLSHIYGVATFYSTFSLKPRG-RNIISICLG 90 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E++ E N ++ D + E V C G C P++ I +D + +T Sbjct: 91 TACHVRGGERIRESLTNTLNITDGQTTEDKRFTLESVRCIGCCSLGPVIKINEDMHGRIT 150 Query: 162 PERLEEIIDAF 172 P+++ I+ + Sbjct: 151 PDKVNPILSHY 161 >gi|302875115|ref|YP_003843748.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|307690259|ref|ZP_07632705.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium cellulovorans 743B] gi|302577972|gb|ADL51984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 160 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ +I +L +AQE G++ R ++ L + Y +V + TFY+ F + G + V Sbjct: 26 EAHLIVILHKAQELFGYLPREVQVFISKKLGIPYSKVYGVVTFYSFFSTTAKGKYV-INV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG +++E K+ DG + + + C GAC AP+V + Y Sbjct: 85 CKGTACFVRGAGEILEEFEKKLEINQGETTQDGKYTIDTLRCVGACGLAPVVSVNGKVYG 144 Query: 159 DLTPERLEEIIDAFS 173 + ++++I +S Sbjct: 145 HFNKKDVDKLIQEYS 159 >gi|218514552|ref|ZP_03511392.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli 8C-3] Length = 115 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFYT F Sbjct: 7 IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 PVG H+Q+C CML E L+ Sbjct: 65 HTEPVGM-FHLQLCDNVSCMLCRSEDLL 91 >gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 607 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 + + +A +D+ + +FYT F P + ++VC + PC + G + +V N Sbjct: 40 SVLNTLAMKMDLPQSAISGFTSFYTMFSTEPR-AKFIIRVCKSGPCHVMGARTIFDVIEN 98 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + + +DG EE EC G C AP +M+ D + +L+ ++EI+D++S Sbjct: 99 HLGIRAGETTADGLFHLEECECLGLCSAAPAMMVNYDMHGNLSESNIKEILDSYSA 154 >gi|262280143|ref|ZP_06057928.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus RUH2202] gi|262260494|gb|EEY79227.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus RUH2202] Length = 169 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I YP R +A + L Q + GWV A + +A +L M+ + +ATFY + P Sbjct: 29 IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG R + +C + C L G E L E + ++ + DG + + C G C P Sbjct: 87 VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPT 145 Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172 +MI +DT+ + ++++++ + Sbjct: 146 LMIDEDTHGLVEVTSIKQLLEKY 168 >gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E subunit [Nostoc sp. PCC 7422] Length = 170 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + +A L + RV +ATFY F L+P GT V V Sbjct: 36 QDALIEVLHKAQELFGYLENDLLHYIAQSLKLPPSRVYGVATFYHLFSLAPKGTHTCV-V 94 Query: 99 CGTTPCMLRGCEKL---IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C T C ++G E L +E C K+H +S+ LS C GAC AP V+ Sbjct: 95 CTGTACYVKGAENLLTTVEKCA-KVHVGETTPSSE--LSLLTARCLGACGIAPAVVFDGT 151 Query: 156 TYEDLTPERLEEIID 170 TPE + E I+ Sbjct: 152 VCGHQTPELVTEQIE 166 >gi|182413364|ref|YP_001818430.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae PB90-1] gi|177840578|gb|ACB74830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae PB90-1] Length = 228 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L Q Q G++ R ++ L + R+ E+ TFY F+L P G +V VC Sbjct: 90 LIMILHAIQNQHGYIPREVAMELSRELGVKLARIYEVTTFYHYFKLQPPGAH-NVVVCNG 148 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C L+G ++ CRN++ ++D + V C G C +P +++ T+ + Sbjct: 149 TACYLKGAGDILGECRNQLGIAEGQTSADRQFHLDTVRCIGCCGMSPAIVVDGKTHGRVK 208 Query: 162 PERLEEIIDA 171 + II+A Sbjct: 209 TSDVAGIINA 218 >gi|332715499|ref|YP_004442965.1| NAD-dependent formate dehydrogenase subunit gamma [Agrobacterium sp. H13-3] gi|325062184|gb|ADY65874.1| NAD-dependent formate dehydrogenase gamma subunit [Agrobacterium sp. H13-3] Length = 178 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L R QE+ G+V + +V+A L+++ V + +FY F+ P G R +++C Sbjct: 47 MLPILHRVQEEFGYVPDSVKQVIALALNVSRAEVHGVVSFYPDFRDHP-GGRHVLKLCRA 105 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C GCE L + + K+ DG+++ E V C G C AP +M+ + + + Sbjct: 106 EACQSMGCESLADTIKGKLGLDWHQTAKDGSVTLEPVFCLGLCAQAPALMLDGEVHARVD 165 Query: 162 PERLEEII 169 L +I+ Sbjct: 166 EHCLGDIL 173 >gi|170751377|ref|YP_001757637.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium radiotolerans JCM 2831] gi|170657899|gb|ACB26954.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 157 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + + A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P G R Sbjct: 20 THLEGATLPILHALQETFGYVDSGAVPLIADALNLSRAEVHGCITFYHDFRAHPAG-RHE 78 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V++C C G +KL ++ +DG+ + E V C G C N P ++ + Sbjct: 79 VKLCRAEACQAMGSDKLHREILGRLGCGWHETTADGSATVEPVYCLGLCANGPAALVDGE 138 Query: 156 TYEDLTPERLEEII 169 LT + LE + Sbjct: 139 PVAHLTADALEAAL 152 >gi|299771416|ref|YP_003733442.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1] gi|298701504|gb|ADI92069.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1] Length = 169 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I YP R +A + L Q + GWV A + +A +L M+ + +ATFY + P Sbjct: 29 IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG R + +C + C L G E L E + ++ + DG + + C G C P Sbjct: 87 VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPT 145 Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172 +MI +DT+ + ++++++ + Sbjct: 146 LMIDEDTHGLVEVTSVKQLLEKY 168 >gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] gi|151281625|gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] Length = 159 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q G++ + + +A L+++ V + T+Y F+ PVG VQ+C Sbjct: 24 GALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVHGVITYYHFFRQHPVGEHV-VQIC 82 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C RGCE L + + + D + + V C G C + P + I D Y Sbjct: 83 RAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQTVYCLGQCASGPAIQIDDDLYAR 142 Query: 160 LTPERLEEIIDA 171 ++ E+ +I A Sbjct: 143 VSKEKFNSLIQA 154 >gi|300087733|ref|YP_003758255.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527466|gb|ADJ25934.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 156 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+EV+ ++ S ++ +L Q Q ++ R +I +A LD+ RV +ATF+ F Sbjct: 12 VDEVVVKHNGD--PSMLVAMLQDVQAQLYFLPRESIVRIAEKLDIPLTRVYSVATFFRAF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + +++VC T C +RG EK+++ ++ D + E C GAC Sbjct: 70 SLKPRG-KHNLKVCMGTACHVRGAEKVLDKIETELCVCAGETTKDMKYTIETANCVGACA 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 P+V++ + +T ++++ I++ Sbjct: 129 LGPVVVVDNEFVGQMTTDKVKTILE 153 >gi|219849355|ref|YP_002463788.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aggregans DSM 9485] gi|219543614|gb|ACL25352.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aggregans DSM 9485] Length = 173 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +A+I +L +AQE G++S + +A L + RV +ATFY F L+P G R VC Sbjct: 37 NALIEVLHKAQELYGFLSPELLSEIAQRLHLPPSRVYGVATFYHFFSLAPQG-RHSCTVC 95 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154 T C +RG L+ K H + DG LS C GAC AP V +IG Sbjct: 96 LGTACYVRGAAILLRELETLSGIKAGHTSPDGQLSLLTARCLGACGIAPAVVLDGEVIGH 155 Query: 155 DTYEDLT 161 DLT Sbjct: 156 ADRSDLT 162 >gi|307823548|ref|ZP_07653777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] gi|307735533|gb|EFO06381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] Length = 158 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ G++ ++ +A L ++ V + +FY F+ +P G + + +C Sbjct: 24 ALLPILHGIQDAMGYIPAESVPYIATALSLSRAEVHGVISFYHYFRDTPPGVQT-IHLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G KL E ++K+ +DG S E V C G C +P + IGK+ Y + Sbjct: 83 AESCQSMGGRKLEEHVKSKLGIDFHETTADGKFSLEPVYCLGNCACSPAMQIGKEIYGRV 142 Query: 161 TPERLEEIID 170 + + + +I+ Sbjct: 143 SADSFDAVIN 152 >gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] Length = 721 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I LL Q G++ RAA+ V+A L+++ V + ++Y + P G R +Q+C Sbjct: 43 GSLIELLHSLQNALGFIPRAAVPVIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 101 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158 C RG + L + + + ++DG+++ E V C G C +P VM+ + + + Sbjct: 102 RAEACKSRGGDALFAHAQATLGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 161 Query: 159 DLTPERLEEIID 170 +T +RL+ +++ Sbjct: 162 RMTADRLDALLE 173 >gi|164686659|ref|ZP_02210687.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM 16795] gi|164604049|gb|EDQ97514.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM 16795] Length = 166 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +SA+I +L AQ G++ + +A+ L ++ +V + +FY+ F +P+G + V Sbjct: 27 ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIG-EYKISV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ ++ K D + E + C GAC AP+V++ Y Sbjct: 86 CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145 Query: 159 DLTPERLEEIIDAF 172 TP+ + +I+D + Sbjct: 146 QATPDDVSKILDNY 159 >gi|291549369|emb|CBL25631.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus torques L2-14] Length = 159 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I++Y + ++IP++ QE+ ++ + VA L ++ + +A+FY F Sbjct: 11 DEIIAQYTCE--EKSLIPIIQGIQEEYRYLPPELLTYVAEKLGISEAKAYSVASFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 G ++VC T C +R ++E ++ K H D + E V C GAC Sbjct: 69 FEAKGKYV-IKVCDGTACHVRKSIPILEGLYKELGLGKKKHTTDDQLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP VM+ + + +TPE++ E+I Sbjct: 128 LAPAVMVNDEVHPKMTPEKMSELI 151 >gi|262376774|ref|ZP_06070002.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145] gi|262308484|gb|EEY89619.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145] Length = 169 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 + YP R +A + L Q + GWV A + +A +L M+ + +ATFY + P Sbjct: 29 MGHYPYPR--AACLDALKCVQRRNGWVDDAQMNAIAQMLSMSVADLEGVATFYNRIYRQP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG R + +C + C L G E L E + ++ + +DG + + C G C P Sbjct: 87 VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCDKGPT 145 Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172 +MI +DT+ + ++++++ + Sbjct: 146 LMIDEDTHGLVEVTSVKQLLEKY 168 >gi|260892246|ref|YP_003238343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] gi|260864387|gb|ACX51493.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] Length = 158 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E+ E++++Y + + +L Q + G++ A+EVVA + ++ + +A+ Sbjct: 3 EAVTVTREIVAKYKGR--EGVLTHILQDIQGRFGYLPPEAMEVVAEEMGVSLAELYGMAS 60 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY +F +P G + ++VC T C +RG E+++ ++ K + D + E V C Sbjct: 61 FYARFYFTPRG-KTVIKVCRGTACHVRGSERVLAKFSEELGLKEGETSPDLKFTLEAVNC 119 Query: 141 QGACVNAPMVMIGKDTYEDLTPERL 165 G C AP+VMI + + P +L Sbjct: 120 VGCCALAPVVMINEKVFTANDPGKL 144 >gi|298507476|gb|ADI86199.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400] Length = 162 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R + V Sbjct: 21 REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRV-IHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E L+ ++ +P +DG + C G C AP +M+G + Sbjct: 80 CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139 Query: 159 DLTPERLEEII 169 +T ER EI+ Sbjct: 140 RVTLERAGEIL 150 >gi|222099433|ref|YP_002534001.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM 4359] gi|221571823|gb|ACM22635.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM 4359] Length = 170 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 53 EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL 112 E ++ A E+V+ L++ +V E+ TFYT F P G + ++VC + PC + ++ Sbjct: 47 ENFIPPEAAEIVSEELNVPLSKVYEVLTFYTMFSTKPKG-KYVIRVCESLPCHVENGREV 105 Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 ++ + + D + E C G C AP++M+ + Y ++TPE+++ +I+ Sbjct: 106 VKALKETLKIDFGQTTPDNMFTLEMTSCLGLCGVAPVIMVNDEYYGNMTPEKVKNLIN 163 >gi|297203643|ref|ZP_06921040.1| formate dehydrogenase [Streptomyces sviceus ATCC 29083] gi|297148464|gb|EDY61257.2| formate dehydrogenase [Streptomyces sviceus ATCC 29083] Length = 225 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L Q + G V + A+ V+A L+++ V + TFY F+ P G R V++ Sbjct: 91 RGALLPVLHAVQAELGHVPQEAVPVLAEELNLSRADVHGVVTFYHDFRREPAG-RTTVRI 149 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C C G ++L+ R PL +DG+++ E+V C G C P V Y Sbjct: 150 CRAEACQALGADQLVSYARES--GLPLGETAADGSVTVEQVFCLGNCALGPSVEANGRLY 207 Query: 158 EDLTPERLEEIIDA 171 + P RL I++ Sbjct: 208 GRVGPARLGSILNG 221 >gi|39998532|ref|NP_954483.1| NADH dehydrogenase subunit E [Geobacter sulfurreducens PCA] gi|39985479|gb|AAR36833.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA] Length = 162 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R + V Sbjct: 21 REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRV-IHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E L+ ++ +P +DG + C G C AP +M+G + Sbjct: 80 CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139 Query: 159 DLTPERLEEII 169 +T ER EI+ Sbjct: 140 RVTLERAGEIL 150 >gi|73748665|ref|YP_307904.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1] gi|289432691|ref|YP_003462564.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1] gi|288946411|gb|ADC74108.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 161 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L++ Q++ W+ + A+ V+ L++ RV +ATFY F + P G + +V VC Sbjct: 31 LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G K+++ + K SD S E V C G C P+V++ + L Sbjct: 90 TACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149 Query: 162 PERLEEII 169 E+I+ Sbjct: 150 TADAEKIL 157 >gi|150391801|ref|YP_001321850.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149951663|gb|ABR50191.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 160 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L AQ+ G++ + ++ +++ + + TFY+QF L P G + V Sbjct: 25 KGPLMPVLHEAQKIFGYIPLEVQKRISEEIEIPLSEIYGVITFYSQFSLEPKGDYV-IGV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + +I+ KP + DG S C GAC AP++ + +D Y Sbjct: 84 CMGTACYVKGSQPIIDKISELTGTKPGGNSEDGRFSLVATRCIGACGLAPVLTVNEDVYG 143 Query: 159 DLTPERLEEIIDAF 172 L E + I++ + Sbjct: 144 RLKLEDIPGIVEKY 157 >gi|160936131|ref|ZP_02083504.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC BAA-613] gi|158440941|gb|EDP18665.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC BAA-613] Length = 164 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P++ +AQE G++ ++++ + + +V ++TFY QF L P G + + VC Sbjct: 32 GALMPVMQKAQEIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ + +DG S + C GAC AP++MI + Y Sbjct: 91 LGTACYVKGSGEIFRKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150 Query: 160 LTPERLEEIIDAFS 173 LT + + I+ ++ Sbjct: 151 LTVDDIPGILAKYN 164 >gi|51894342|ref|YP_077033.1| putative iron hydrogenase small subunit gamma [Symbiobacterium thermophilum IAM 14863] gi|51858031|dbj|BAD42189.1| putative iron hydrogenase small subunit gamma [Symbiobacterium thermophilum IAM 14863] Length = 186 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQE G++ VA L + V + TFY F L+PVG + + VC Sbjct: 34 LIAVLHKAQEIFGFLPEEVQRHVAAALHVPPSEVYGVVTFYNYFTLTPVG-KYPINVCMG 92 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G +L+ + ++ +P DG S E C GAC AP+V + + + LT Sbjct: 93 TACYVQGAGRLLSLFERELGIQPGQVTPDGLFSLEVCRCLGACGLAPVVTVAGEVHGKLT 152 >gi|147669424|ref|YP_001214242.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|146270372|gb|ABQ17364.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1] Length = 161 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L++ Q++ W+ + A+ V+ L++ RV +ATFY F + P G + +V VC Sbjct: 31 LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G K+++ + K SD S E V C G C P+V++ + L Sbjct: 90 TACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149 Query: 162 PERLEEII 169 E+I+ Sbjct: 150 TADAEKIL 157 >gi|226953549|ref|ZP_03824013.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244] gi|262373372|ref|ZP_06066651.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205] gi|294649463|ref|ZP_06726887.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus ATCC 19194] gi|226835727|gb|EEH68110.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244] gi|262313397|gb|EEY94482.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205] gi|292824633|gb|EFF83412.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus ATCC 19194] Length = 169 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I YP R +A + L Q + GWV A + +A +L ++ + +ATFY + P Sbjct: 29 IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG R + +C + C L G E L E + ++ + +DG + + C G C P Sbjct: 87 VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPT 145 Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172 +MI +DT+ + ++++++ + Sbjct: 146 LMIDEDTHGLVDVSSVKQLLEKY 168 >gi|104780975|ref|YP_607473.1| formate dehydrogenase subunit gamma [Pseudomonas entomophila L48] gi|95109962|emb|CAK14667.1| putative formate dehydrogenase, gamma subunit [Pseudomonas entomophila L48] Length = 161 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L Q G + AA+ +A+ L+++ V + +FY F+ +P R +++C Sbjct: 23 GALLPVLHAIQAGIGHIPDAAVGEIAHALNLSLAEVRGVISFYHDFRTTPP-ARHTLRLC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C RG E L R ++ + DG LS V C GAC +P + + + Sbjct: 82 RAESCQSRGAEALAAQLREQLGLDDHGTSEDGALSLRPVYCLGACACSPALELDGQLHAR 141 Query: 160 LTPERLEEIIDAFSTG 175 +TPERL ++ G Sbjct: 142 VTPERLRALVAGCREG 157 >gi|57235005|ref|YP_180895.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 155 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 23 AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +IW V+ VI++ SR +++P L QE+ G++ A+ + L + I + + Sbjct: 3 SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMI 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ + G + +++C + PC L G E +++ + + +P D + E V Sbjct: 61 TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVP 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P ++I Y LT + + E++D T Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L QE+ G + A + +A L++ V + +FY+ + P G + ++ C + Sbjct: 37 LMPVLQAVQEEIGCLPPAVQDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCES 95 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 PC ++G + L+E + ++ H DG + E C G C AP + I + + +LT Sbjct: 96 PPCHIQGADNLLEFTQAELGVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLT 155 Query: 162 PERLEEIIDAFSTGQ 176 +++ +I+ + G+ Sbjct: 156 KDKIRQILADYRAGK 170 >gi|270307596|ref|YP_003329654.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] gi|270153488|gb|ACZ61326.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] Length = 155 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 23 AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +IW V+ VI++ SR +++P L QE+ G++ A+ + L + I + + Sbjct: 3 SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLGIPSIDIYGMI 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ + G + +++C + PC L G E +++ + + +P D + E V Sbjct: 61 TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVP 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P ++I Y LT + + E++D T Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|301059362|ref|ZP_07200289.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300446591|gb|EFK10429.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 162 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 + SR+ S+ +IP+L QE G++ +A ++ ++ + +ATFY+ F L Sbjct: 21 ITSRHKDSK--GGLIPILHEVQELYGYLPDSAFVRISKTCNIPLSEIYGVATFYSFFSLK 78 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + + VC T C ++G ++++ R ++ DG S C GAC AP Sbjct: 79 PKG-KYEISVCMGTACYVKGAGRILDRIREELDIDVGDCTEDGKFSLSACRCLGACGLAP 137 Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172 ++ + + + L + E+++ + Sbjct: 138 VIKVNEQVHGRLALADVSEVLNQY 161 >gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis] Length = 846 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +N++IS+Y S Q +I +L +AQE G++ + +A+ + + V + TFY+ F Sbjct: 13 LNKIISQYKDSPGQ--LIRILQKAQELYGYLPEDILGYIADKVGLPLSEVAGVVTFYSLF 70 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + VC T C ++G ++E + ++ +DG + C GAC Sbjct: 71 TTKPKGKHT-ISVCLGTACYVKGAPNVLEAIKKELAVDMDQTTADGLFTLTNTRCVGACG 129 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP V+I + + + + E+I + Sbjct: 130 LAPAVLIDGEVHGRVKASDVPELIRQY 156 >gi|262369336|ref|ZP_06062664.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046] gi|262315404|gb|EEY96443.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046] Length = 169 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I YP R +A + L Q + GWV A + +A +L ++ + +ATFY + P Sbjct: 29 IGHYPYPR--AASLDALKCVQRRNGWVDDAQLNAIAQLLTISVADLEGVATFYNRIYRQP 86 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 VG R + +C + C L G E L E + ++ + +DG + + C G C P Sbjct: 87 VG-RNVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCDKGPT 145 Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172 +M+ +DT+ + ++++++ + Sbjct: 146 LMVNEDTHGLVEVSSVKQLLEKY 168 >gi|73748097|ref|YP_307336.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147668875|ref|YP_001213693.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|289432123|ref|YP_003461996.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146269823|gb|ABQ16815.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|288945843|gb|ADC73540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 155 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 23 AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +IW V+ VI++ SR +++P L QE+ G++ A+ + L + I + + Sbjct: 3 SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMI 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ + G + +++C + PC L G E +++ + + +P D + E V Sbjct: 61 TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLELVP 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P ++I Y LT + + E++D T Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|257065151|ref|YP_003144823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia heliotrinireducens DSM 20476] gi|256792804|gb|ACV23474.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia heliotrinireducens DSM 20476] Length = 162 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E+I YP Q + + Q ++ + +A L ++ +ATFY Sbjct: 10 VKEIIEAYPAD--QRFALAAMQDMQHAFNYIPEEGLAALAEYLGCPQAQLYSMATFYKAL 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G V++C T C LRG L + + +P DG S E V C G+C Sbjct: 68 SLTPKGDHI-VKICNGTACHLRGSMNLATELKRDLGVEPGETTEDGKFSVELVNCLGSCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP++++ + L E++ II+ ++ Sbjct: 127 LAPVMVVDGTYHNKLRVEQIPGIIERYA 154 >gi|56751244|ref|YP_171945.1| bidirectional hydrogenase complex protein HoxE [Synechococcus elongatus PCC 6301] gi|81299089|ref|YP_399297.1| bidirectional hydrogenase complex protein HoxE [Synechococcus elongatus PCC 7942] gi|3947770|emb|CAA73872.1| hoxE [Synechococcus elongatus PCC 6301] gi|56686203|dbj|BAD79425.1| NADH dehydrogenase I chain E [Synechococcus elongatus PCC 6301] gi|81167970|gb|ABB56310.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like [Synechococcus elongatus PCC 7942] Length = 165 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L AQ G++ R ++ VA L + +V +A+FY FQL+P G R VC Sbjct: 30 ALIEILHEAQSLYGYLDRELLQWVAEQLALPRSKVYGVASFYHLFQLNPSG-RHRCHVCL 88 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 T C ++G + +++ ++ + +DG++S V C GAC AP+V+ D Sbjct: 89 GTACYVKGSQAILDCLIAELGIREGETTNDGSVSLGTVRCVGACGIAPVVVYDGD 143 >gi|260588481|ref|ZP_05854394.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583] gi|260540956|gb|EEX21525.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583] Length = 159 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R S++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 11 DEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G + ++VC T C +R ++E + ++ K H D + E V C GAC Sbjct: 69 FEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKKHTTDDMLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP + + + Y +TPE+ +I Sbjct: 128 LAPTMTVNNEVYPSMTPEKALNLI 151 >gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] Length = 906 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 3/148 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++EVI RY S Q +I LL +AQE G++ A +A +D+ V + +FY+ Sbjct: 19 LLDEVIDRYKDSPGQ--LIRLLHKAQEIFGYLPEAVQCHIAERMDLPVSEVAGVVSFYSL 76 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P G V VC T C ++G +++ + ++ +DG + + C GAC Sbjct: 77 FSRQPKGKHT-VSVCMGTACYVKGAPEVLTAIKKELSIDLGQTTADGMFTLTDTRCVGAC 135 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP ++I + + + + ++D + Sbjct: 136 GLAPAIVIDGEVHGRMKAADVPALLDGY 163 >gi|331696854|ref|YP_004333093.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951543|gb|AEA25240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 158 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q + G V + + ++A L+++ V + TFY F+ +P G R V+VC Sbjct: 28 LLPILHAVQAELGHVPPSVVPLLAERLNLSRAEVHGVVTFYRDFRAAPPG-RVTVRVCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G + L+E + + DG ++ +EV C G C P V +G + +T Sbjct: 87 EACQAVGGQALLEHAVASLGVERGETTPDGAVTLDEVFCLGNCALGPAVQVGDRLHGRVT 146 Query: 162 PERLEEII 169 P RL+ +I Sbjct: 147 PARLDALI 154 >gi|293609136|ref|ZP_06691439.1| predicted protein [Acinetobacter sp. SH024] gi|292829709|gb|EFF88071.1| predicted protein [Acinetobacter sp. SH024] gi|325121084|gb|ADY80607.1| NADH dehydrogenase I chain E [Acinetobacter calcoaceticus PHEA-2] Length = 169 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L M+ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|331082242|ref|ZP_08331369.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403036|gb|EGG82601.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium 6_1_63FAA] Length = 159 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R S++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 11 DEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G + ++VC T C +R ++E + ++ K H D + E V C GAC Sbjct: 69 FEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKQHTTDDMLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP + + + Y +TPE+ +I Sbjct: 128 LAPTMTVNNEVYPSMTPEKALNLI 151 >gi|298293799|ref|YP_003695738.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella DSM 506] gi|296930310|gb|ADH91119.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella DSM 506] Length = 157 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +SEE A V E S + ++P+L QE G+V A + ++A +L+++ Sbjct: 2 PHYEPWSEERARAVIEEFSHL-----EGPLMPMLHAVQETFGYVPEAVVPMLAEMLNISR 56 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V + TFY F+ P G R +++C C G + L + +++ K +DG Sbjct: 57 AEVHGVVTFYHDFRHEPAG-RHVLKLCRAEACQAAGGDALADHAEHRLGCKLGETTADGR 115 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ E + C G C AP M+ L RL+ +I Sbjct: 116 VTVEPIYCLGLCATAPSAMLDGRIVARLNERRLDALI 152 >gi|169634178|ref|YP_001707914.1| NADH dehydrogenase subunit E [Acinetobacter baumannii SDF] gi|169152970|emb|CAP02016.1| NADH dehydrogenase I chain E [Acinetobacter baumannii] Length = 169 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L EV + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEVFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|239627942|ref|ZP_04670973.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47_FAA] gi|239518088|gb|EEQ57954.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47FAA] Length = 164 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P++ +AQ+ G++ ++++ + + +V ++TFY QF L P G + V VC Sbjct: 32 GALMPVMQKAQDIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKVSVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ + +DG S + C GAC AP++MI + Y Sbjct: 91 LGTACYVKGSGEIFSKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150 Query: 160 LTPERLEEIIDAFS 173 LT + + I+ ++ Sbjct: 151 LTVDDIPGILAKYN 164 >gi|108744328|gb|ABG02413.1| FdsG [Xanthobacter flavus] Length = 164 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+ QE G+V A+ ++A+ L+++ V + TFY F+ P G R V++ Sbjct: 23 EGATMPIFHALQETFGFVPDPAVPMIADSLNLSRAEVYGVLTFYHDFRREPPG-RHVVKL 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L + K+ + ++DG ++ E + C G C AP ++ Sbjct: 82 CAAEACQSVGGKALAAYAQEKLDVEMGETSADGRVTLEPIYCLGLCACAPAALVDGQLMG 141 Query: 159 DLTPERLEEIIDAFSTGQ 176 L + ++EI D ++G+ Sbjct: 142 RLDRDAIDEIADCIASGK 159 >gi|126665579|ref|ZP_01736561.1| ATP synthase subunit E [Marinobacter sp. ELB17] gi|126630207|gb|EBA00823.1| ATP synthase subunit E [Marinobacter sp. ELB17] Length = 178 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G+V A+ ++A +L + + +FY F+ P G+ ++VC Sbjct: 40 ALLPILHAIQDRVGYVPEDAVPIIAEMLQQTRADIHGVISFYHHFRTHPSGSNL-LEVCR 98 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG L + ++ +D + V C G C P + + D + Sbjct: 99 AEACQARGGRALERHVQERLSVGYHDTTADNEFTLVPVYCLGNCACGPSIRVNNDIIGRV 158 Query: 161 TPERLEEIIDAFST 174 TP++ ++++DA +T Sbjct: 159 TPQKFDQLVDALTT 172 >gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 638 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 +S + VA +++ V FYT F P + ++VC + PC + G + + Sbjct: 67 LSPETLNAVAEAMNLPQSTVAGFVGFYTMFSTRPR-AKFLIRVCKSGPCHVMGARTIFDY 125 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + P +DG E EC G C AP +MI D + +LT ER+ I+D + + Sbjct: 126 VEKHLGISPGQTTADGLFHLEACECLGICSVAPAMMINYDLHGNLTEERIATILDGYRS 184 >gi|284009323|emb|CBA76484.1| NADH-quinone oxidoreductase chain E [Arsenophonus nasoniae] Length = 153 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 20 RAASIEALKIVQKKRGWVEDGAIYAIASLLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 78 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + + P +DG + C G C P +MI +DT+ Sbjct: 79 CDSVVCHITGYQGIETEIIKLLQIAPGQTTADGRFTLLPTCCLGNCDKGPTMMIDEDTHS 138 Query: 159 DLTPERLEEIIDAF 172 + P ++ +++ + Sbjct: 139 HVKPSDIQRLLEQY 152 >gi|283850903|ref|ZP_06368189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] gi|283573826|gb|EFC21800.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] Length = 166 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + A I ++ Q G++ A+E A +L M + + +ATFY PVG R + Sbjct: 20 RTREAAIDVMYALQRHYGYLCDEAMEYAARLLGMTTLELESLATFYDFLYRRPVG-RYVI 78 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 VC + C + + + + + P DG + C G C NAP ++I Sbjct: 79 HVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAACIGNCHNAPTMLINGRF 138 Query: 157 YEDLTPERLEEIID 170 Y+ L PE++ I+D Sbjct: 139 YDRLHPEKINAILD 152 >gi|87120637|ref|ZP_01076531.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp. MED121] gi|86164280|gb|EAQ65551.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp. MED121] Length = 189 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q Q G+V +++ ++ L+++ V + TFY F P G R ++VC Sbjct: 45 LLPILHEVQHQLGYVPDSSLPIIGKALNISRAEVHGVVTFYHHFSSKPRG-RHIIEVCRA 103 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G L ++ + D ++ E V C G C +P + +G + Y + Sbjct: 104 ESCQSMGGRDLEAHAKSALGLDWYQTTMDKEITLEPVFCLGNCACSPAIRVGDEVYGRMD 163 Query: 162 PERLEEIIDAFST 174 E+ +EI+D T Sbjct: 164 AEQFDEIVDELRT 176 >gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum seropedicae SmR1] gi|300073591|gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L QE+ G++ A+ ++A L+++ V + +FY F+ P G R VQVC Sbjct: 24 GAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAG-RHVVQVC 82 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C RG E L E +N + ++DG + E V C G C P + + + + Sbjct: 83 RAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLTLDDELHAR 142 Query: 160 LTPERLEEIIDA 171 + ++ + +I A Sbjct: 143 VDADKFKRLIQA 154 >gi|254282625|ref|ZP_04957593.1| formate dehydrogenase, gamma subunit [gamma proteobacterium NOR51-B] gi|219678828|gb|EED35177.1| formate dehydrogenase, gamma subunit [gamma proteobacterium NOR51-B] Length = 154 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 C+ A++PLL Q Q G + AAI+ +A L+++ V + +FY F+ SP G VQ Sbjct: 15 CEGALLPLLHAVQAQWGHIPDAAIDPIARELNLSAAEVHGVISFYHDFKTSPQGEHL-VQ 73 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC C RG L ++ G ++ E V C G C P + I D Y Sbjct: 74 VCCAEACQARGSRSLESYATQRLGIDYGETTVSGRVTLERVYCLGNCACGPSLRIDDDVY 133 >gi|220909417|ref|YP_002484728.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7425] gi|219866028|gb|ACL46367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7425] Length = 176 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L +AQE G++ + +A L + RV +ATFY F L P G V VC Sbjct: 43 ALIEVLHKAQESFGYLEEEVLVYIARGLKLPLSRVYGVATFYHLFSLKPSGAHTCV-VCL 101 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G K+ E ++ K DG +S C GAC AP+V+ Sbjct: 102 GTACYVKGSNKVAEGLEQELGIKVGETTPDGKISLMAARCVGACGIAPVVVF 153 >gi|160947615|ref|ZP_02094782.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270] gi|158446749|gb|EDP23744.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270] Length = 161 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A++P+L AQ G++ ++++A + + +V +ATFY+QF P G + V VC Sbjct: 29 GALMPVLQEAQSIFGYLPEEIMDLIAKRMKIFPAKVFGVATFYSQFSFIPKG-KYQVSVC 87 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++++ ++I + + D S + C G C AP+V I +D Y Sbjct: 88 MGTACYVKGAQEILNEFCDRIGVEVGGTSEDLKFSVAQTRCIGECNLAPVVTINEDVYAH 147 Query: 160 LTPERLEEII 169 + + I+ Sbjct: 148 IKKADIRRIM 157 >gi|119489275|ref|ZP_01622082.1| ATP synthase subunit E [Lyngbya sp. PCC 8106] gi|119454749|gb|EAW35894.1| ATP synthase subunit E [Lyngbya sp. PCC 8106] Length = 176 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G R + + Sbjct: 41 QDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RHNCVI 99 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C T C +RG +K++ + DG +S C GAC AP+V+ Sbjct: 100 CMGTACYVRGGDKVLAAIEEQTGVHSGETTPDGLVSLVTARCVGACGIAPVVV 152 >gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] Length = 714 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++ LL Q+ G++ RAA+ +A L+++ V + ++Y + P G R +Q+C Sbjct: 36 GGLLELLHSLQDALGFIPRAAVPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 94 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158 C RG + L + + + ++DG+++ E V C G C +P VM+ + + + Sbjct: 95 RAEACKSRGGDALFAHAQETLGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 154 Query: 159 DLTPERLEEIID 170 +T +RL+ +++ Sbjct: 155 RMTADRLDALLE 166 >gi|298528248|ref|ZP_07015652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511900|gb|EFI35802.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 161 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + +IP L Q + G++ ++ ++ L+++ + +A+FY F P G + V Sbjct: 24 RKRGILIPALHEIQNKMGYLDPEELKELSKSLNISLTEIYSVASFYKMFHFKPRGKKI-V 82 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC T C +RG + +++ + K D T++ E V C G C AP+V ++ Sbjct: 83 KVCFGTACYVRGAKVVLDSLSEEFDVKDGETTEDLTMTLETVGCVGCCGLAPVVTCNEEV 142 Query: 157 YEDLTPERLEEIIDA 171 ++ ++L+ ID+ Sbjct: 143 VGEIDGKKLDAFIDS 157 >gi|218441076|ref|YP_002379405.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. PCC 7424] gi|218173804|gb|ACK72537.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7424] Length = 166 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + +A L + RV +ATFY F L P G V V Sbjct: 34 QDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSRVYGVATFYHLFSLKPSGEHTCV-V 92 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C T C ++G +K++ ++ K + DG +S C GAC AP V+ Sbjct: 93 CLGTACYVKGGDKILSDLEKQLGIKVGETSPDGKVSLVSARCIGACGIAPAVVF 146 >gi|330815878|ref|YP_004359583.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3] gi|327368271|gb|AEA59627.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3] Length = 156 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S + + ++SR+ +R +++ +L Q++ G+V + ++A L+++ V + T+ Sbjct: 4 SPVSADALVSRH--ARADQSLVAILHAIQDEAGYVPEGCVPLLAKTLNLSRAEVHGVLTY 61 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +P R +Q+C C G E L+E + + + + + + G + E V C Sbjct: 62 YHHFRTTPPA-RVTIQLCRAEACRSLGGEALVEHAQARTGCR-IDQGAQGDVELESVYCL 119 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C +P MI + + +T R + ++ A Sbjct: 120 GFCAQSPSAMINGEPHARMTAARFDALLTA 149 >gi|323484498|ref|ZP_08089864.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum WAL-14163] gi|323692559|ref|ZP_08106792.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673] gi|323402276|gb|EGA94608.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum WAL-14163] gi|323503425|gb|EGB19254.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673] Length = 164 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI-- 73 F+ + E + VIS + A++P+L AQE G++ IEV I D I Sbjct: 10 FTCTAEQEADLKRVISELKDT--AGALMPILQHAQEIFGYLP---IEVQTMISDETGIPL 64 Query: 74 -RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 ++ +ATFY+QF L P G + + VC T C ++G + + + DG Sbjct: 65 EKIYGVATFYSQFSLQPKG-QYRISVCLGTACYVKGSGDIFKKLEELLGITNGECTPDGK 123 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + C GAC AP++MI + Y LT + + I+ + Sbjct: 124 FSLDSCRCVGACGLAPVMMINDEVYGRLTVDDVPTILAKY 163 >gi|298528320|ref|ZP_07015724.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511972|gb|EFI35874.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 173 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 AV +L R Q+ G++ ++ +A +++ V +A+FY+ F L P G R ++VC Sbjct: 42 AVTQVLRRCQDLVGYLPVELLDYIARGMNIPASEVFGVASFYSLFSLKPRG-RNIIRVCT 100 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G + ++ + H D + E V C GAC AP + I + + + Sbjct: 101 GTACHVKGADLVMRRLKQTYHLDDGSTTPDRRFTLESVRCMGACGLAPAMTINQTAHGHI 160 Query: 161 TPERLEEIIDAF 172 TP++ +++ + Sbjct: 161 TPDQALKLLQEY 172 >gi|50083952|ref|YP_045462.1| NADH dehydrogenase subunit E [Acinetobacter sp. ADP1] gi|49529928|emb|CAG67640.1| NADH dehydrogenase I chain E [Acinetobacter sp. ADP1] Length = 170 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PVG Sbjct: 33 YPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQMLSISVADLEGVATFYNRIYRQPVG- 89 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + +C + C L G E L E + ++ + +DG + + C G C P +MI Sbjct: 90 RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPTLMI 149 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DT+ + ++++++ + Sbjct: 150 DEDTHGLVDVSSVKQLLEKY 169 >gi|189219242|ref|YP_001939883.1| NAD-dependent formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] gi|189186100|gb|ACD83285.1| NAD-dependent formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] Length = 159 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + +++C Sbjct: 27 NGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILKIC 85 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C GC K+I + + +DG L+ C G C N P V + Y Sbjct: 86 RAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLYGR 145 Query: 160 LTPERLEEII 169 + +++E+++ Sbjct: 146 VNTQKMEKLL 155 >gi|322420256|ref|YP_004199479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320126643|gb|ADW14203.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 180 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 5/144 (3%) Query: 30 ISRYPP----SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 I +PP + + +I L +AQ+ G++ VAN + V + TFY+ F Sbjct: 25 IDSFPPVTEWRKKRGDLIASLHKAQQLFGYLPEEVQLFVANKFRLQLSDVAGVVTFYSFF 84 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G R V VC T C ++G ++++ +++ D S + C GAC Sbjct: 85 VVRPPG-RYTVNVCTGTACFVKGADRVLREFEHELGIASGETRGDLEFSLGGLRCVGACS 143 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 AP+VM+ Y ++TP+ ++ I+ Sbjct: 144 LAPVVMVNDRVYGNVTPDMVKAIV 167 >gi|114566556|ref|YP_753710.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337491|gb|ABI68339.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++IS+Y +I Q + ++ AI V A + + + +ATFY+ ++ Sbjct: 6 DIISKY--QDLPGGIIEAYHALQREYSYIPEDAIRVAAEVFGIPTAKAWGVATFYSYLKV 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G +++C + PC + G ++I ++ K DG + E EC G C Sbjct: 64 GKRGKNV-IRICESAPCHVAGAAEVIAALEKELGIKMGETTPDGKFTLELCECVGQCQAT 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++ + Y D+TPE++ ++ + Sbjct: 123 PVITVNSKPYGDMTPEKVSGVLAEY 147 >gi|307153310|ref|YP_003888694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7822] gi|306983538|gb|ADN15419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7822] Length = 179 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + +A L + +V +ATFY F L P G V V Sbjct: 43 QDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSQVYGVATFYHLFSLKPSGEHTCV-V 101 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C T C ++G +K++ ++ K ++DG +S C GAC AP V+ Sbjct: 102 CLGTACYVKGGDKILSELEKQLGVKVGETSADGKVSLVSARCIGACGIAPAVVF 155 >gi|297569385|ref|YP_003690729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925300|gb|ADH86110.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio alkaliphilus AHT2] Length = 206 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I L Q G++ AA+ + L + ++ + TFY F L P G V VC Sbjct: 63 GGLIEALHAVQRAYGYIDEAAMRAIGAALQLPLSKIYGVVTFYHFFHLKPKGRHTCV-VC 121 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G ++L++ + P +DG LS C GAC AP V+I Sbjct: 122 LGTACYIKGADRLLQTISREQQVSPGETTADGRLSLLTARCVGACGQAPAVVI 174 >gi|161075749|gb|ABX56622.1| formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] Length = 153 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + +++C Sbjct: 21 NGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILKIC 79 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C GC K+I + + +DG L+ C G C N P V + Y Sbjct: 80 RAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLYGR 139 Query: 160 LTPERLEEII 169 + +++E+++ Sbjct: 140 VNTQKMEKLL 149 >gi|239905978|ref|YP_002952717.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1] gi|239795842|dbj|BAH74831.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1] Length = 166 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 1/143 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q G++ A+ A +L M + + +ATFY PVG R + V Sbjct: 23 REAAVDVMYALQHHYGYLCDEAMHRAAEVLGMTTLELESLATFYDYLYRRPVG-RYVIHV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + + + + + P DG + C G C NAP ++I Y+ Sbjct: 82 CDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAACVGNCHNAPTMLINGRFYD 141 Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181 LTPE ++ +I G + +R Sbjct: 142 RLTPEAVDAVIAELRAGTEEPVR 164 >gi|320353703|ref|YP_004195042.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320122205|gb|ADW17751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 171 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ ++ + VA LD+ RV +ATFY+ F L P G + +++C Sbjct: 34 LIPILQAVQEEYRYLPEDVLTFVAAGLDVPPARVYGVATFYSHFALEPKG-KYCIRLCDG 92 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++ ++E ++ ++ L + E V C GAC AP+V+I ++ + + Sbjct: 93 TACHVKRSIPILEAIYKRLGLSSKRTTTEDMLFTVETVACLGACGLAPVVVINEEVHGQM 152 Query: 161 TPERLEEIID 170 TPE ++I+ Sbjct: 153 TPEAAIQLIN 162 >gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L QE+ G + + +A L++ V + +FY+ + P G + ++ C + Sbjct: 37 LMPVLQAVQEEIGCLPPTVQDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCES 95 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 PC ++G + L+E + ++ H DG + E C G C AP + I + + +LT Sbjct: 96 PPCHIQGADNLLEFTQAELGVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLT 155 Query: 162 PERLEEIIDAFSTGQ 176 +++ +I+ + G+ Sbjct: 156 KDKIRQILADYRAGK 170 >gi|288941581|ref|YP_003443821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium vinosum DSM 180] gi|288896953|gb|ADC62789.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium vinosum DSM 180] Length = 164 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R VC Sbjct: 33 ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G LIE + P D LS C GAC AP V++ Sbjct: 92 GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVV 143 >gi|160942427|ref|ZP_02089734.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC BAA-613] gi|158434679|gb|EDP12446.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC BAA-613] Length = 162 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I + +R + ++IP++ QE+ ++ + VA + + + +A+FY F Sbjct: 11 DEIIEMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKEIGITEAKAYSVASFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWEEVECQGAC 144 G + +++C T C +R +++ K++ K H D + E V C GAC Sbjct: 69 FEEKG-KYIIKICDGTACHVRKSMPILDYLYKTLKLNAKK-HTTEDALFTVETVSCLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AP + + + Y ++PE+++++++ G+ D Sbjct: 127 GLAPAITVNEKVYPKMSPEKMKKLLEEIKRGEPD 160 >gi|13474500|ref|NP_106069.1| formate dehydrogenase subunit gamma [Mesorhizobium loti MAFF303099] gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrogenase gamma subunit [Mesorhizobium loti MAFF303099] Length = 159 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 7/159 (4%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 QP+S + +A + E+ P ++P+L Q++ G V +AA+ V+A+ L++ Sbjct: 3 MQPASTEIASRTAAIIQELKGLEGP------LLPILHEIQDEFGHVPQAALPVIADGLNL 56 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 + V + TFY F+ P G R +++C C G + + + + D Sbjct: 57 SRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKIKQLLGIGFHETTRD 115 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 G+++ E V C G C +P M+ + L ++++EI+ Sbjct: 116 GSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIL 154 >gi|186470174|gb|ACC85637.1| HoxE [Lyngbya majuscula CCAP 1446/4] Length = 174 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G R + + Sbjct: 39 QDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RHNCVI 97 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C T C +RG +K++ + DG +S C GAC AP+V+ Sbjct: 98 CLGTACYVRGGDKVLAALEEQTGIHSGETTPDGLVSLVTARCVGACGIAPVVV 150 >gi|212696953|ref|ZP_03305081.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM 7454] gi|212676041|gb|EEB35648.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM 7454] Length = 167 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P+L + Q ++ ++++A L ++ + +ATFY+QF L P G + V Sbjct: 26 KGAVMPVLQKCQNLFSYIPEPIVDLMALKLGVSSSEIYGVATFYSQFSLKPKGEH-EICV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTY 157 C T C ++G +K+++ +++ + DG +S E C G C AP+V I G Sbjct: 85 CLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLDI 144 Query: 158 EDLTPERLEEII 169 +L+ + +II Sbjct: 145 GNLSSADVHKII 156 >gi|215484516|ref|YP_002326751.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter baumannii AB307-0294] gi|213985764|gb|ACJ56063.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter baumannii AB307-0294] Length = 168 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 29 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 86 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 87 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 145 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 146 MIDEDTHGLVEVTSIKQLLEKY 167 >gi|298528243|ref|ZP_07015647.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511895|gb|EFI35797.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 153 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++VI Y + + + LL +E G+V + +++ L++ R IATF++Q Sbjct: 5 LDKVIENYHEN--EGNALTLLQDLEENFGYVPEETVYELSDRLNIPPSRFFGIATFFSQL 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144 L P G + VC TPC ++G EK++ R ++ S D + EEV C GAC Sbjct: 63 HLKPRGKNI-ITVCRGTPCHVKGSEKILSRMRMELDIPSGEETSEDRMFTVEEVNCVGAC 121 Query: 145 VNAPMVMIGK 154 AP+V+I + Sbjct: 122 GMAPVVVINQ 131 >gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum] Length = 160 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R VC Sbjct: 29 ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 87 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G LIE + P D LS C GAC AP V++ Sbjct: 88 GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVV 139 >gi|116515041|ref|YP_802670.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256895|gb|ABJ90577.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+A I L QE W+ + +I ++ IL + V IATFY PVG R ++ Sbjct: 23 QAACIEALKIVQEHRKWICKDSIIAISKILSIPACEVESIATFYCHIFRKPVG-RNIIRY 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + + + + + ++ P SD + C GAC P++++ K Y Sbjct: 82 CDSVVCFINNFKSIKKKLKYILNISPGETTSDCRYTLLPTCCLGACDKGPVMLVNKTLYT 141 Query: 159 DLTPERLEEIIDAF 172 LT + L I+D + Sbjct: 142 RLTSKMLINILDKY 155 >gi|323703082|ref|ZP_08114737.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323531976|gb|EGB21860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 187 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE +++V++ Y R +I +L AQ G++ +++ +D+ V + Sbjct: 9 EEKFNRLDQVLAVY--GRDPEQLIRVLQEAQHIFGYLPEEVQAYISHKMDIPVSAVNGVV 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + +V VC T C ++G +K+ + R+++ K D + Sbjct: 67 TFYALFSTEPKG-KYNVNVCLGTACYVQGAQKIYDTFRDQLGLKDSDTTEDMLFTVRSSR 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----STGQGD----TIRPG 183 C GAC AP++ + +D + LT + E+I + + G+ D RPG Sbjct: 126 CLGACGLAPVITVNEDVHGKLTARDVAELIGRYKKKEAAGEKDEGQELTRPG 177 >gi|310778493|ref|YP_003966826.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309747816|gb|ADO82478.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 159 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQ+ G++ E + + + + + TFY+ F +P G + VC Sbjct: 29 LISVLHKAQDMFGYLPVEVQEFIGEKMGIPISEIYGVITFYSFFTTTPKGEHP-ISVCMG 87 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G E ++ ++ K +DG S + + C GAC AP++ IG TY + Sbjct: 88 TACYVNGSETILNELTRELGVKVGETTNDGKFSIDVLRCIGACGMAPIIKIGNKTYGRVE 147 Query: 162 PERLEEIIDAF 172 E+++ I+ + Sbjct: 148 AEQVKHILKEY 158 >gi|169797055|ref|YP_001714848.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AYE] gi|184157032|ref|YP_001845371.1| NADH dehydrogenase subunit E [Acinetobacter baumannii ACICU] gi|213156539|ref|YP_002318200.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057] gi|239501291|ref|ZP_04660601.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB900] gi|260555653|ref|ZP_05827873.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|301347791|ref|ZP_07228532.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB056] gi|301510626|ref|ZP_07235863.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB058] gi|301595911|ref|ZP_07240919.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB059] gi|332852144|ref|ZP_08433971.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150] gi|332867543|ref|ZP_08437696.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113] gi|332872607|ref|ZP_08440575.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059] gi|169149982|emb|CAM87876.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AYE] gi|183208626|gb|ACC56024.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Acinetobacter baumannii ACICU] gi|193076537|gb|ABO11195.2| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978] gi|213055699|gb|ACJ40601.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057] gi|260410564|gb|EEX03862.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|322506931|gb|ADX02385.1| nuoE [Acinetobacter baumannii 1656-2] gi|323516798|gb|ADX91179.1| NADH dehydrogenase subunit E [Acinetobacter baumannii TCDC-AB0715] gi|332729516|gb|EGJ60855.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150] gi|332733960|gb|EGJ65105.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113] gi|332739136|gb|EGJ69995.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059] Length = 169 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|325845920|ref|ZP_08169118.1| putative bidirectional hydrogenase complex protein HoxE [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481826|gb|EGC84858.1| putative bidirectional hydrogenase complex protein HoxE [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P+L + Q ++ ++++A L ++ + +ATFY+QF L P G + V Sbjct: 26 KGAVMPVLQKCQNLFSYIPEPIVDLMALNLGVSSSEIYGVATFYSQFSLKPKGEH-EICV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTY 157 C T C ++G +K+++ +++ + DG +S E C G C AP+V I G Sbjct: 85 CLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLDI 144 Query: 158 EDLTPERLEEII 169 +L+ + +II Sbjct: 145 GNLSSADVHKII 156 >gi|163853800|ref|YP_001641843.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium extorquens PA1] gi|218532744|ref|YP_002423560.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium chloromethanicum CM4] gi|240141252|ref|YP_002965732.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens AM1] gi|254563761|ref|YP_003070856.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit gamma [Methylobacterium extorquens DM4] gi|28207553|gb|AAO32144.1| NAD-linked formate dehydrogenase gamma subunit [Methylobacterium extorquens AM1] gi|163665405|gb|ABY32772.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium extorquens PA1] gi|218525047|gb|ACK85632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium chloromethanicum CM4] gi|240011229|gb|ACS42455.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens AM1] gi|254271039|emb|CAX27046.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens DM4] Length = 157 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P R HV++ Sbjct: 23 EGATLPILHALQEAFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L +++ ++DG ++ E V C G C NAP ++ + Sbjct: 83 CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANAPAALVDDEPLA 141 Query: 159 DLTPERLEEII 169 L+ E L+ + Sbjct: 142 RLSAESLDAAL 152 >gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] Length = 717 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++I LL Q G++ RAA+ +A L+++ V + ++Y + P G R +Q+C Sbjct: 43 GSLIELLHSLQNALGFIPRAAVPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 101 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158 C RG + L + + + ++DG+++ E V C G C +P VM+ + + + Sbjct: 102 RAEACKSRGGDALFAHAQAAMGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 161 Query: 159 DLTPERLEEII 169 +T +RL+ ++ Sbjct: 162 RMTEDRLDALL 172 >gi|295112091|emb|CBL28841.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Synergistetes bacterium SGP1] Length = 163 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ + +++ R+ Q+ +IP++ Q ++ R A+E++A+ L ++ +V Sbjct: 3 YTDVDVSRIRDILLRHTAD--QTNLIPIMQGVQALYNYLPRPALEMIADYLHVSISKVYG 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWE 136 +ATFY F L+ G ++ C T C +R ++ R ++ +D L + E Sbjct: 61 VATFYENFSLNAKGKHI-IRCCDGTACHVRKGATILGAIRKELGLTAAQSTTDDMLFTVE 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C GAC P+V++ + + +T ++ E++++ Sbjct: 120 IVSCLGACGLGPVVVVDDEVHPTMTVDKARELLESI 155 >gi|209525023|ref|ZP_03273567.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima CS-328] gi|209494432|gb|EDZ94743.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima CS-328] Length = 178 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G V V Sbjct: 41 QDALIEVLHKAQEAFGYLEEDVLIYVARQLKLPLSQVYGVATFYHLFSLKPSGAHTCV-V 99 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +++ K K DG +S C GAC AP + Sbjct: 100 CLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDGKVAG 159 Query: 159 DLTPE----RLEE 167 TPE RLE+ Sbjct: 160 QQTPEMAVARLEQ 172 >gi|57234358|ref|YP_181589.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes 195] gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes 195] Length = 161 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L++ Q++ W+ + A+ V+ L++ RV +ATFY F + P G + +V VC Sbjct: 31 LIQVLLKIQKEYNWLPKEALYKVSQALNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G K+++ + K D S E V C G C P+V++ + L Sbjct: 90 TACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149 Query: 162 PERLEEII 169 E+I+ Sbjct: 150 TADAEKIL 157 >gi|320161183|ref|YP_004174407.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] gi|319995036|dbj|BAJ63807.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] Length = 159 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + + +IP+L Q G++ +E VA +L + +V +ATFY + +G R Sbjct: 23 GKTREELIPILQEINRQYGFIPSQGLEEVARLLQIPKSQVFSVATFYHMLNVKEMG-RHI 81 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + C + PC + G ++ + ++ D S V C G C P+++I +D Sbjct: 82 ILFCESAPCHVVGGREVWRRLKQELKIDAGETTPDKKWSLVTVSCLGVCGVGPVIVIDED 141 Query: 156 TYEDLTPERLEEIIDAFS 173 Y ++TPE + +I+ ++ Sbjct: 142 MYGNVTPEMIPDILARYN 159 >gi|116624104|ref|YP_826260.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227266|gb|ABJ85975.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Solibacter usitatus Ellin6076] Length = 170 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L QE G++ A + VA++L + RV ATFY F L P G R VC Sbjct: 33 ALIETLHTVQECFGYLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKG-RHTCVVCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G L+ + KP +DG LS C G+C AP ++ + + Sbjct: 92 GTACYIKGAPALLGAIEKQYGIKPGETTADGELSVLTARCLGSCGLAPAAVMDQAVLGKI 151 Query: 161 TPERL 165 P + Sbjct: 152 GPAEM 156 >gi|260551030|ref|ZP_05825235.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp. RUH2624] gi|260405978|gb|EEW99465.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp. RUH2624] Length = 169 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSVKQLLEKY 168 >gi|189425851|ref|YP_001953028.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] gi|189422110|gb|ACD96508.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] Length = 171 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L AQE G++SR + VA L + +V +ATFY F L P G + + VC Sbjct: 33 ALIEVLHTAQEAFGYLSRELLAHVAARLKLPESQVFGVATFYHFFTLRPKGEHSCI-VCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G +++ K +DG LS C G C APM+M+ + Sbjct: 92 GTACYVKGAGEILGRLEQAAGIKAGQTTADGRLSLGTARCLGNCSLAPMMMLDDTVHGPE 151 Query: 161 TPE 163 +P+ Sbjct: 152 SPD 154 >gi|118475092|ref|YP_891365.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter fetus subsp. fetus 82-40] gi|118414318|gb|ABK82738.1| hydrogenosomal NADH dehydrogenase 24 kda subunit [Campylobacter fetus subsp. fetus 82-40] Length = 163 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 3/155 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F F+ E +NE+ + R + V+P L Q +G++ + + L + + Sbjct: 3 FEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGFIDAKDVLYLEKTLGIRSMFY 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E FY+ F G + ++ C T C LRG ++LI+ ++ + K +SDG S Sbjct: 61 AEAIGFYSMFNQKSKG-KFELKFCKTITCKLRGSDELIKFTQDILGIKMGETSSDGLFSL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 E EC G C AP ++ + + L + +I+ Sbjct: 120 GETECLGYCEKAPCMLCNLEQIDSLDENSITNLIE 154 >gi|154247409|ref|YP_001418367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter autotrophicus Py2] gi|154161494|gb|ABS68710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter autotrophicus Py2] Length = 176 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+L QE G+V A+ ++A L+++ V + TFY F+ G R V++ Sbjct: 35 EGATMPILHALQETFGFVPDPAVPMIAESLNLSRAEVYGVLTFYHDFRREAPG-RHVVKL 93 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L + K+ + DG ++ E + C G C AP ++ Sbjct: 94 CAAEACQSVGGKALAQYVEEKLGVDMGSTSPDGRVTLEPIYCLGLCACAPSALVDGQLVG 153 Query: 159 DLTPERLEEIIDAFSTGQ 176 L + ++EI D F+ G+ Sbjct: 154 RLDRDAIDEIADCFANGK 171 >gi|160902192|ref|YP_001567773.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] gi|160359836|gb|ABX31450.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] Length = 169 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 1/141 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +I +L + QE G++ ++VA L + +V + TFY F P G + + V Sbjct: 30 RSLLIEVLHKVQENLGYIPNEVQKLVAKKLKIPSSQVYGVVTFYNFFSTKPKG-KYPISV 88 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G ++++ + ++ + DG S V C GAC AP+V IG+ Y Sbjct: 89 CLGTACYVGGANEILDEFKKILNVEEEEVTEDGLFSIHPVRCLGACGLAPVVKIGEKVYG 148 Query: 159 DLTPERLEEIIDAFSTGQGDT 179 L + II + + ++ Sbjct: 149 RLKINDVRRIIRDYRAKEKNS 169 >gi|320102224|ref|YP_004177815.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644] gi|319749506|gb|ADV61266.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644] Length = 183 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ YP Q+ +P L E V R A+ +A +LD+ +V + +FY F Sbjct: 30 ITALLPNYPSK--QAVTLPALHLVHETFRCVPRQAMVEIAELLDLTPAQVHDTMSFYGFF 87 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +P+G V +C + C RG ++L+ K+ P SDG L+ E EC G C Sbjct: 88 HQAPIGD-VRVWICRSISCAARGGDELLTKTCAKLGIHPGETTSDGKLTVEYAECLGICD 146 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +AP + D P E ++A D +R GP Sbjct: 147 HAPAAL--ADDGRIFGPLEDESSLEAML----DAVRQGP 179 >gi|152996298|ref|YP_001341133.1| formate dehydrogenase subunit gamma [Marinomonas sp. MWYL1] gi|150837222|gb|ABR71198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Marinomonas sp. MWYL1] Length = 165 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++PLL Q++ ++ A+ ++A L ++ V + +FY F+ G R V+VC Sbjct: 27 ALLPLLHAIQDRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFRTKQPG-RHVVEVCR 85 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G L ++ + + +D ++ E V C G C P V +G + Y ++ Sbjct: 86 AEACQAVGARHLEAYAKSILDVQYHQTTADNNITLEPVYCLGNCSCGPSVRVGDEIYAEV 145 Query: 161 TPERLEEIIDAFST 174 +R +E+I++ T Sbjct: 146 DTQRFDELIESLKT 159 >gi|220931144|ref|YP_002508052.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] gi|219992454|gb|ACL69057.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] Length = 136 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L QE G++S I ++ M R+ + FY+ F PVG + V+VC + C Sbjct: 10 LHNIQETYGFISEGEIRKLSQEYKMPRARIYGVIRFYSMFYTEPVG-KYIVRVCDSLSCH 68 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 + E ++EV ++ + K D + E VEC G C P++M+ Y ++P Sbjct: 69 INDSEGIVEVVKDYLGIKNGETTEDKKFTLEVVECLGHCGEGPVMMVNDRIYTRVSPNMA 128 Query: 166 EEII 169 EI+ Sbjct: 129 LEIL 132 >gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 570 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +++ V+ +Y R +SA++P+L QE+ G+VS A++ VA++L + +V +ATFY Sbjct: 12 FISTVVGKY--DRQRSALLPILRVIQEEYGYVSELAMQYVADLLGIHAAKVYGVATFYHF 69 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 P G + +++ +++G + + + DG + + C G Sbjct: 70 INTEPKG-KFIIRLSRDISSIMKGANDIARQLETVLGIRFGETTPDGLFTLQWTSCIGMD 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP +MI + + +LTP + +II Sbjct: 129 DQAPAMMINSEVFSNLTPLLIPQII 153 >gi|253698813|ref|YP_003020002.1| NADH dehydrogenase subunit E [Geobacter sp. M21] gi|251773663|gb|ACT16244.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 155 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++E + + R A+ P ++ Q GW++ A+ A +L ++ ++V E+A Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAAALLGLSPLQVEELA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY PVG + + VC + C C+ +IE + ++ + +DG + Sbjct: 62 TFYEMIYRRPVGKKV-IHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C ++P + +G Y LTP ++EI++ Sbjct: 121 CMGRCGDSPAMSVGDTPYGHLTPHLVDEILE 151 >gi|307822804|ref|ZP_07653035.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] gi|307736408|gb|EFO07254.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] Length = 159 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 5/145 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +N +S Y S I L Q+ WVS + VA +LD++ ++ +ATFY Sbjct: 17 INAEMSHYENKTAVS--IEALKIVQKHRRWVSDQCLIAVAELLDISPAQLEGVATFYNLI 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 PVG + + C + C + G +++ E +CR+ ++ + ++DG + + C GAC Sbjct: 75 YRQPVG-KTVIHYCNSVTCWMLGSDQVGESLCRH-LNVELGEMSADGEYTVLPIVCLGAC 132 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 +AP+VM+G + D+T + + EI+ Sbjct: 133 DHAPVVMVGNELKFDITEDAVNEIL 157 >gi|284050503|ref|ZP_06380713.1| bidirectional hydrogenase complex protein HoxE [Arthrospira platensis str. Paraca] gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FACHB341] gi|291570292|dbj|BAI92564.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 179 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G V V Sbjct: 41 QDALIEVLHKAQEAFGYLEEDVLIYVARQLQLPLSQVYGVATFYHLFSLKPSGAHTCV-V 99 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +++ K K DG +S C GAC AP + Sbjct: 100 CLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDGKVAG 159 Query: 159 DLTPE 163 TPE Sbjct: 160 QQTPE 164 >gi|225405645|ref|ZP_03760834.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme DSM 15981] gi|225042839|gb|EEG53085.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme DSM 15981] Length = 164 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +++P++ +AQ+ G++ ++++ + + +V ++TFY QF L P G + + VC Sbjct: 32 GSLMPVMQKAQDIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVC 90 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ + +DG S + C GAC AP++MI + Y Sbjct: 91 LGTACYVKGSGEIFSKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150 Query: 160 LTPERLEEIIDAFS 173 LT + + I+ ++ Sbjct: 151 LTVDDVPGILAKYN 164 >gi|302037259|ref|YP_003797581.1| formate dehydrogenase subunit gamma [Candidatus Nitrospira defluvii] gi|300605323|emb|CBK41656.1| Formate dehydrogenase, gamma subunit [Candidatus Nitrospira defluvii] Length = 149 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S ++ L+ QEQ G V A+ +A+ L + +V + ++Y +L+ G R ++VC Sbjct: 17 SNILKALLALQEQLGHVPTEAVPDIAHALGVTTAQVAGVLSYYPDLRLTAPG-RHLIRVC 75 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C GC +L+ ++++ + G + + + C G C +P VMI +D + Sbjct: 76 MGESCYANGCGRLLRELQDRLRVDVGETAAGGKFTLDTMSCAGNCAVSPTVMIDRDLHGR 135 Query: 160 LTPERLEEIIDAF 172 L P +L+ +++ + Sbjct: 136 LLPSQLDTLLERY 148 >gi|332285352|ref|YP_004417263.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7] gi|330429305|gb|AEC20639.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7] Length = 168 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q G + A+ V+A L + + + +FY F+ P G ++VC Sbjct: 35 LLPILHAIQHALGCIPALAVPVLAKALQRSRAEIQGVISFYPHFREKPAGA-VMLEVCRA 93 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G L E R ++ ++G ++ + V C G C +P VMI + +T Sbjct: 94 ESCQAMGGNALAEHARQQLGCNFDDTTANGAVTLQAVYCLGLCAQSPAVMINGQPHARMT 153 Query: 162 PERLEEIIDA 171 PE+L+ ++ A Sbjct: 154 PEKLDRLLQA 163 >gi|164688082|ref|ZP_02212110.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM 16795] gi|164602495|gb|EDQ95960.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM 16795] Length = 166 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +SA+I +L AQ G++ + +A+ L ++ +V + +FY+ F +P+G + V Sbjct: 27 ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIG-EYKISV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ ++ K D + E + C GAC AP+V++ Y Sbjct: 86 CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145 Query: 159 DLTPERLEEIIDAF 172 T + + +I+D + Sbjct: 146 QATTDDVSKILDNY 159 >gi|223984600|ref|ZP_03634727.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM 12042] gi|223963447|gb|EEF67832.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM 12042] Length = 164 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMR-AQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E+S ++ ++ R+ R + + L++ Q++ G++ A+E +A ++ V Sbjct: 4 LNEQSVQVIDRIVDRH---RGRPGPVKLMLHDVQKELGYIPFEAMEKIAAASGVSAAEVY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFYTQF P G + VC T C ++G L++ + K ++DG S + Sbjct: 61 GVVTFYTQFTTEPKGKHV-INVCMGTACYVKGSADLLQRICDLTGTKVNQTSADGLFSLD 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTP-----ERLEEII 169 C GAC AP+ ++ Y + T +R++ II Sbjct: 120 ATRCLGACGLAPVAILDDQVYGNATSSTALEDRIKAII 157 >gi|270308167|ref|YP_003330225.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily [Dehalococcoides sp. VS] gi|270154059|gb|ACZ61897.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily [Dehalococcoides sp. VS] Length = 161 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L++ Q++ W+ + A+ V+ L++ RV +ATFY F + P G V VC Sbjct: 31 LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKGKHT-VSVCVG 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C + G K+++ + K D S E V C G C P+V++ + L Sbjct: 90 TACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149 Query: 162 PERLEEIIDAF 172 E+I+ + Sbjct: 150 TADAEKILADY 160 >gi|300114496|ref|YP_003761071.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii C-113] gi|299540433|gb|ADJ28750.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii C-113] Length = 154 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 S YP + Q+ I + Q GW+S ++ +A+ L ++ + ATFY PV Sbjct: 15 SHYPTA--QAVGIEAMKIVQHHRGWISDESLREIADHLGLSVESLDGAATFYNLIFRRPV 72 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + +C + C + G E+L E + ++ DG + C GAC AP++ Sbjct: 73 GKHV-ILICDSVSCWIMGYEQLREQLQKELKIGLGETTQDGRFTLLPSCCLGACERAPVM 131 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 ++ +D + DL E++ EI+ + Sbjct: 132 IVDEDLHGDLDSEKIGEILADY 153 >gi|153812807|ref|ZP_01965475.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174] gi|149831167|gb|EDM86256.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174] Length = 159 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 7/155 (4%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y P +++IP++ Q + ++ + VA+ + + + +ATFY F Sbjct: 11 DEIIEHYGPK--PASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G ++VC T C +R + E ++ H D + E V C GAC Sbjct: 69 FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 AP + + + + +TPE+ ID + +G+T+ Sbjct: 128 LAPTLTVNDEVHPKMTPEK---AIDLLNELRGETV 159 >gi|78222327|ref|YP_384074.1| bidirectional hydrogenase complex protein HoxE [Geobacter metallireducens GS-15] gi|78193582|gb|ABB31349.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Geobacter metallireducens GS-15] Length = 205 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L AQE G++S + VA L + + +V +ATFY F L P G V VC Sbjct: 51 ALIEVLHVAQEAFGYLSDELMAHVARQLKIPFSQVYGVATFYHFFSLEPRGAHTCV-VCT 109 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++ +++ + K DG L+ + C G+C AP++++ +T Sbjct: 110 GTACYVKRSAEILVRLEQEFRVKAGKTTEDGGLTLSTIRCLGSCGQAPVMVLDGETVGQC 169 Query: 161 TPE 163 TP+ Sbjct: 170 TPD 172 >gi|134299510|ref|YP_001113006.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052210|gb|ABO50181.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1] Length = 158 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +I ++ QE +G++ + + A L + V +ATFY F L P G R V +C Sbjct: 26 NGLIVVMAAIQESQGYLPKDLLVRTAEELGVPLSDVYGVATFYAAFSLRPRG-RHSVNLC 84 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ + ++ K + D S + V C GAC AP++ + + Y Sbjct: 85 LGTACYVKGAPEVQSMLEKEMGIKAGNTTEDRRFSLDLVRCLGACGIAPVLTVNGEVYPR 144 Query: 160 LTPERLEEIIDAF 172 +T E++ E++ + Sbjct: 145 MTAEKVTEVLSKY 157 >gi|218782890|ref|YP_002434208.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218764274|gb|ACL06740.1| 2Fe-2S family protein similar to NADH:ubiquinone oxidoreductase (NuoE) [Desulfatibacillum alkenivorans AK-01] Length = 156 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 45 LLMRAQEQE---GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 LLM Q+ +V I V+ L ++ + +ATFY L P G + + VC Sbjct: 25 LLMIMQDISDIYNYVPPEVIPVLVEKLGVSESLIYSVATFYKTISLEPRG-KYIINVCTG 83 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG EK+ ++ + +DG + + V C GAC + P+ M+ DT+ L Sbjct: 84 TACHVRGAEKITNALAEELGIEEGQTTADGMFTLDAVRCVGACASGPVAMVNHDTHGALN 143 Query: 162 PERLEEIIDAF 172 E++D + Sbjct: 144 RSSALEMLDQY 154 >gi|291546306|emb|CBL19414.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp. SR1/5] Length = 159 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 8/147 (5%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R +++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 11 DEIIEHY--GRKAASLIPIMQDIQAEYRYLPGELLTYVAEQIGVKEAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143 P G + ++VC T C +R + E ++ H+K H D + E V C GA Sbjct: 69 FEPKG-KYIIKVCDGTACHVRKSMPVKEAMLKELGLSHKK--HTTDDMMFTVETVSCLGA 125 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170 C AP + + + + +TPE+ E+++ Sbjct: 126 CGLAPTLTVNDEVHPKMTPEKAVELLN 152 >gi|77164633|ref|YP_343158.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus oceani ATCC 19707] gi|254433276|ref|ZP_05046784.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] gi|76882947|gb|ABA57628.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707] gi|207089609|gb|EDZ66880.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] Length = 154 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 + YP + Q+ I + Q GWVS ++ +A L ++ + ATFY PV Sbjct: 15 AHYPTA--QAVGIEAMKIVQHHRGWVSDESLREIAEYLGLSVESLDGAATFYNLIFRRPV 72 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + +C + C + G E+L E + ++ DG + C GAC AP++ Sbjct: 73 GKHV-ILICDSVSCWIMGYEQLREQLQTELKIGLGETTQDGRFTLLPSCCLGACERAPVM 131 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 ++ +D + DL E++ EI+ + Sbjct: 132 VVDQDLHGDLDSEKIGEILAGY 153 >gi|170727207|ref|YP_001761233.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi ATCC 51908] gi|169812554|gb|ACA87138.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi ATCC 51908] Length = 179 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 3/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + S S + ++E+IS P + I L Q + GWVS A++ ++ + Sbjct: 17 AEISLSSKEQQGIDELISHSP--QLAGITIDALKLIQAERGWVSDASLHALSLYTQIPVA 74 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + +ATFY PVG + + C C L G E + + + +++ +D Sbjct: 75 DLDSVATFYNLIFRQPVG-KVVLHPCDGISCDLMGGEHIRQCLKQQLNITAGETTTDNRF 133 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + + C GAC AP+++ K +E++T + L +++ ST Sbjct: 134 TLIPLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTLST 174 >gi|53804299|ref|YP_113851.1| formate dehydrogenase subunit gamma [Methylococcus capsulatus str. Bath] gi|53758060|gb|AAU92351.1| formate dehydrogenase, gamma subunit [Methylococcus capsulatus str. Bath] Length = 159 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G++ A+ +A L+++ V + +FY F+ + G + +C Sbjct: 24 ALLPILHGIQDRIGFIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPGKHT-IHLCR 82 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C E L + ++ +DG S E V C G C +P +MI + Y + Sbjct: 83 AESCQAMNSESLETHVKARLGIDYHETTADGAFSLEPVYCLGNCACSPSMMIDHEVYGHV 142 Query: 161 TPERLEEIID 170 +P+ + IID Sbjct: 143 SPQSFDAIID 152 >gi|251779355|ref|ZP_04822275.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083670|gb|EES49560.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 163 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +ATFY F L P G +++ Sbjct: 22 KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +RG ++E R + +D + + E V C GAC AP+ + Y Sbjct: 81 CNGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140 Query: 158 EDLTPERLEEII 169 +T ++ +II Sbjct: 141 PSMTQQKARDII 152 >gi|262275221|ref|ZP_06053031.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia hollisae CIP 101886] gi|262220466|gb|EEY71781.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia hollisae CIP 101886] Length = 171 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q +V AA+ ++A L+++ V + +FY +F+ P G+ +Q+C Sbjct: 31 ALLPILHEIQHHLSYVPPAAVPMIARGLNLSNADVHGVISFYHEFRNQPPGSHV-IQICR 89 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G + L +++ D + E V C G C+ +P V +G D + D+ Sbjct: 90 AESCQSMGSQTLERHAFSRLGIGFHETTKDKNFTLEPVYCLGNCMYSPCVRVGDDIHGDM 149 Query: 161 TPERLEEIIDAFST 174 + + ++++ T Sbjct: 150 NDDAFDSLVNSLIT 163 >gi|188584098|ref|YP_001927543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium populi BJ001] gi|179347596|gb|ACB83008.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium populi BJ001] Length = 157 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P R HV++ Sbjct: 23 EGATLPILHALQETFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L +++ ++DG ++ E V C G C N P ++ + Sbjct: 83 CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANGPAALVDDEPLA 141 Query: 159 DLTPERLEEII 169 L+ E L+ + Sbjct: 142 RLSAESLDAAL 152 >gi|330720273|gb|EGG98632.1| NAD-dependent formate dehydrogenase gamma subunit [gamma proteobacterium IMCC2047] Length = 164 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 21 ESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E A W V+E+I + A++P+L Q+ +G++ + A+ ++A L+ V Sbjct: 3 EQAQWDRQRVSEII--HSTKSMAGALLPMLHAIQDSQGYIPKDAVPMIAESLNQTRAEVH 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY F+ +P R +++C C RG +L + K+ + S + Sbjct: 61 GVISFYHHFRQTP-PARKRIEICRAEACQARGSRELEAYAKEKLGISYHGMTASRDFSLD 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 V C G C P V IG + + R +E++D Sbjct: 120 PVYCLGNCACGPSVRIGDEVVGRVDKTRFDELVD 153 >gi|84686200|ref|ZP_01014095.1| ATP synthase subunit E [Maritimibacter alkaliphilus HTCC2654] gi|84665727|gb|EAQ12202.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2654] Length = 160 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + EVI Y + + ++P+L E V A++ +A+ L++ V + +FY F Sbjct: 15 IQEVIEAY--THLEGPLLPILHAMMEAFDHVPEDAVQPIADALNIGRAEVHGVISFYHDF 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G R V++C C G L + ++ +G ++ E V C G C Sbjct: 73 RTLPAG-RHIVKICRAEACQALGANGLADAVLTRLGTSWHGTTPNGAVTIEPVYCLGLCA 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 N P MIG L +LE +I Sbjct: 132 NGPAAMIGDKVVGALDEAKLERVI 155 >gi|317133526|ref|YP_004092840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens harbinense YUAN-3] gi|315471505|gb|ADU28109.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens harbinense YUAN-3] Length = 160 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 8/156 (5%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E++ V+ ++ R+ S SA+I +L QE+ ++ A+ V+ ++ + +A Sbjct: 4 EQTIAAVDAIVDRHDAS--PSALIAILEEIQEECHYLPGDALARVSERTGVSESEIFSVA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWE 136 TFY F L+ G ++VC T C +R ++ R+K+ KP D + E Sbjct: 62 TFYKNFSLTAKGKYV-IKVCDGTACHVRKSIPILNALRDKLGVSEAKP--TTDDQLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C GAC AP++ + + +TPE ++D Sbjct: 119 TVSCLGACGLAPVMTVNDHVHPKMTPETALAVVDGL 154 >gi|289548716|ref|YP_003473704.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM 14484] gi|289182333|gb|ADC89577.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM 14484] Length = 154 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS-PV 90 +Y P R + A++ L Q+ G + A+E VA IL + V + FY F P Sbjct: 15 QYFPRR-EQAILLCLHEVQDYYGHIPNFALEEVAKILHVPLNHVESVVAFYDMFDRGEPA 73 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 R ++VC + C ++L+ + + DG V+C GAC AP+ Sbjct: 74 KHR--IRVCVSVVCHFMKKDQLLNALKKHLGIDFWQVTKDGRFKLIPVQCLGACSCAPVF 131 Query: 151 MIGKDTYEDLTPERLEEIIDAFS 173 MI +DTY+ E+L EI+ ++ Sbjct: 132 MIDEDTYQFEGEEKLHEILSRYT 154 >gi|187934365|ref|YP_001886498.1| Fe-hydrogenase gamma subunit [Clostridium botulinum B str. Eklund 17B] gi|187722518|gb|ACD23739.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B str. Eklund 17B] Length = 163 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +ATFY F L P G +++ Sbjct: 22 KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +RG ++E R + +D + + E V C GAC AP+ + Y Sbjct: 81 CDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140 Query: 158 EDLTPERLEEII 169 +T ++ +II Sbjct: 141 PSMTQQKARDII 152 >gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp. WH 5701] gi|87282303|gb|EAQ74263.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp. WH 5701] Length = 168 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L AQ+ ++S + VA L + RV A+FY F+ P R VC Sbjct: 36 ALIEVLHGAQKLYSYLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQPP-ARHRCVVCT 94 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G LI + K R DG S EV C G C +AP+V+I Sbjct: 95 GTACQIQGAPALIAAMEEGLGLKLGARRGDGWASLSEVRCLGTCSDAPLVLIDGTVGRQQ 154 Query: 161 TPERL 165 TP L Sbjct: 155 TPAGL 159 >gi|167746891|ref|ZP_02419018.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662] gi|167653851|gb|EDR97980.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662] Length = 157 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+A+IP++ Q + ++ + VA+ L + + +ATFY F P G + ++V Sbjct: 21 QAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYSVATFYENFSFEPKG-KYIIKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +R ++E +++ +D + + E V C GAC AP++ + Y Sbjct: 80 CNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLETVSCLGACGLAPVITVNDKVY 139 Query: 158 EDLTPERLEEII 169 +TP+ E+I Sbjct: 140 PAMTPDAAAELI 151 >gi|188588389|ref|YP_001921433.1| Fe-hydrogenase gamma subunit [Clostridium botulinum E3 str. Alaska E43] gi|188498670|gb|ACD51806.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E3 str. Alaska E43] Length = 163 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S+VI ++ Q+Q ++ + A+ +A L ++ ++ +ATFY F L P G +++ Sbjct: 22 KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +RG ++E R + +D + + E V C GAC AP+ + Y Sbjct: 81 CDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140 Query: 158 EDLTPERLEEII 169 +T ++ +II Sbjct: 141 PSMTQQKARDII 152 >gi|319779886|ref|YP_004139362.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165774|gb|ADV09312.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 159 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 7/159 (4%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 QP+S + +A + E+ P ++P+L QE+ G V + A+ V+A L++ Sbjct: 3 MQPASTEITSRTAAIIQEMKGLEGP------LLPILHGIQEEFGHVPKDALPVIAEALNI 56 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 + V + +FY ++ P G R +++C C G + + + + D Sbjct: 57 SRAEVHGVVSFYHDYRSHPAG-RHVLKLCQAESCQSMGSDAIAAKLKQLLGIGFHETTRD 115 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 G+++ E V C G C +P M+ + L E+L+EI+ Sbjct: 116 GSVTLEPVYCLGLCACSPAAMLDGEVIGRLDDEKLDEIV 154 >gi|164686660|ref|ZP_02210688.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM 16795] gi|164604050|gb|EDQ97515.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM 16795] Length = 191 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S++IP++ Q + ++ + +A+ L + + +ATFY F P G ++VC Sbjct: 53 SSLIPVMQDVQAEYRYLPGELLSYIADKLGIPLAKAYSVATFYENFSFDPKGKYV-IKVC 111 Query: 100 GTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 T C +R + E + K D + E V C GAC AP++ + + Sbjct: 112 DGTACHVRKSVPVREALEKHLGLGKGKQTTDDMMFTIEIVSCLGACGLAPVMTVNDKVHP 171 Query: 159 DLTPERLEEIIDAFSTGQ 176 +TP++ EIID G+ Sbjct: 172 KMTPDKAVEIIDELKEGE 189 >gi|323702076|ref|ZP_08113744.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532958|gb|EGB22829.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 159 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + +I +L QE G++ + + A L + V +ATFY F L P G R V +C Sbjct: 27 NGLIVVLAAIQEVHGYLPKDYLIKTAEELGVPLSDVYGVATFYAAFSLRPRG-RHSVNLC 85 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G ++ + ++ K + D S + V C GAC AP++ + + Y Sbjct: 86 LGTACYVKGAPEVQAMLEKEMGIKAGNTTEDRRFSLDLVRCLGACGIAPVMTVNGEVYPR 145 Query: 160 LTPERLEEIIDAF 172 +T E++ EI+ + Sbjct: 146 MTAEKVSEILAKY 158 >gi|169831498|ref|YP_001717480.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638342|gb|ACA59848.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 155 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S++I +L Q+ G++ + + VA+ L ++ V A+FY F P G R + +C Sbjct: 23 SSLIQVLSHVQQTVGYLPKPVLVEVADKLGLSLTEVYGTASFYAFFTFRPRG-RHGIALC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C ++G + ++ K D S + V C G C AP++ + +D + Sbjct: 82 NGTACYVKGSAAVKVRLEQELGIKAGDTTPDRRFSLDVVRCIGCCALAPVMTVDEDVHAG 141 Query: 160 LTPERLEEIIDAF 172 + PE++ EI++ + Sbjct: 142 VEPEKVPEILEQY 154 >gi|158425076|ref|YP_001526368.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571] gi|158331965|dbj|BAF89450.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571] Length = 159 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 SA E+I+ + A +P+L QE G+V + ++A L+++ V + TF Sbjct: 10 SASRAAEIIAEH--RHMDGATMPILHAVQETFGFVPDPVVPMIAESLNLSRAEVYGVVTF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R +++C C G EKL ++ + + DG ++ E + C Sbjct: 68 YHDFRREPPG-RHVIKLCAAEACQSMGSEKLARYAEERLGIEMGETSPDGKVTLEPIYCL 126 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169 G C AP MI L ++E++ Sbjct: 127 GLCACAPSAMIDGRLVGRLDEATIDELV 154 >gi|332527762|ref|ZP_08403801.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus JA2] gi|332112158|gb|EGJ12134.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus JA2] Length = 136 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 20/132 (15%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97 ++P+L Q G++ R A+ +A L+++ V + ++Y F+ +PV +Q Sbjct: 20 LLPILHELQHTLGYIPREALPRIAQALNLSRAEVHGVVSYYHHFRTEKPTAPV-----LQ 74 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC C G ++L + H + G E V C G C ++P M+G++ Sbjct: 75 VCRAESCQAMGADRLWD-----------HAQAHGGCQVEAVYCLGLCASSPAAMLGEEPL 123 Query: 158 EDLTPERLEEII 169 LTPE+L+E++ Sbjct: 124 GRLTPEKLDEVL 135 >gi|295110159|emb|CBL24112.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus obeum A2-162] Length = 159 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 7/155 (4%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R +++IP++ Q + ++ + VA+ + + + +ATFY F Sbjct: 11 DEIIEHY--GRKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G ++VC T C +R + E ++ H D + E V C GAC Sbjct: 69 FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 AP + + + + +TPE+ E+++ +G+T+ Sbjct: 128 LAPTLTVNDEVHPKMTPEKAIELLNEL---RGETV 159 >gi|300245745|gb|ADJ93930.1| putative benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 178 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E +N VI + A+IP+L +AQ+ G++ V+ L + V + Sbjct: 19 DEKLAKLNAVIEEFKDQ--PGALIPVLHKAQQIYGYLPEEVQYHVSQGLRVPLADVYGVV 76 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F ++P G ++ VC T C ++G +L+ +++ K + D S E Sbjct: 77 TFYALFTMTPRGEN-NIAVCLGTACYVKGAGELVSKISDELGIKIGEISQDRKFSMEATR 135 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C GAC AP++ + ++ + L +L E++ + + RP Sbjct: 136 CIGACGLAPVLTVNEEVHGRLDAGQLGELLQKYKEQYAVSSRP 178 >gi|317471700|ref|ZP_07931041.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900804|gb|EFV22777.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 157 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+A+IP++ Q + ++ + VA+ L + + +ATFY F P G + ++V Sbjct: 21 QAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYSVATFYENFSFEPKG-KYIIKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +R ++E +++ +D + + E V C GAC AP++ + Y Sbjct: 80 CNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLETVSCLGACGLAPVLTVNDKVY 139 Query: 158 EDLTPERLEEII 169 +TP+ E+I Sbjct: 140 PAMTPDAAAELI 151 >gi|298506754|gb|ADI85477.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 191 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++ +L AQE G +S + VA L + RV +ATFY F L G + V VC Sbjct: 38 ALLEVLHVAQETFGCLSDELMNHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCT 96 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++ +++ N+ K +DG L+ V C G+C AP+V++ +T Sbjct: 97 GTACYVKRSAEIVTRLENEFDVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRC 156 Query: 161 TPERLEEIIDAF----STGQGDTIRP 182 TP+ + S + +T+RP Sbjct: 157 TPDSAAAAVRVMLAEKSPARAETVRP 182 >gi|282899669|ref|ZP_06307633.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195548|gb|EFA70481.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 170 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 37 RCQ---SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93 RCQ A+I +L RA E G++ + +A L + RV +ATFY F L+P G + Sbjct: 28 RCQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVATFYHLFSLAPKG-K 86 Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + VC T C ++G ++++ I K DG +S C GAC AP V+ Sbjct: 87 HNCVVCTGTACYVKGAQEILTTLETFIQIKAGDTTPDGEVSLMTARCLGACGIAPAVVFD 146 Query: 154 KDTYEDLTPE 163 + + T + Sbjct: 147 SEVLGNQTAQ 156 >gi|222087422|ref|YP_002545959.1| formate dehydrogenase [Agrobacterium radiobacter K84] gi|221724870|gb|ACM28026.1| formate dehydrogenase [Agrobacterium radiobacter K84] Length = 159 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE+ G+V + + ++A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHGIQEEFGYVPQDTLPLIAKALNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 C C G ++L E + + HQ L DG+++ E V C G C AP M+ Sbjct: 84 CRAEACQSMGGDQLAERVKRLLGIDFHQTTL----DGSVTLEPVYCLGLCACAPAAMLDG 139 Query: 155 DTYEDLTPERLEEII 169 + Y L E E+++ Sbjct: 140 ELYGRLDDEGAEDLV 154 >gi|238026516|ref|YP_002910747.1| formate dehydrogenase subunit gamma [Burkholderia glumae BGR1] gi|237875710|gb|ACR28043.1| Formate dehydrogenase, gamma subunit [Burkholderia glumae BGR1] Length = 162 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S + + ++SR+ R +++ +L Q++ G+V + +A L+++ V + T+ Sbjct: 4 SPVSADALVSRH--VRAGRSLVAILHAIQDEAGYVPEGCVPPLAKALNLSRAEVHGVLTY 61 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +P R +Q+C C G E L+E + + + + +G ++ E V C Sbjct: 62 YHHFRTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCR-IDAGHNGDVALESVYCL 119 Query: 142 GACVNAPMVMIGKDTYEDLTPERL 165 G C +P MI + + L+P R Sbjct: 120 GFCAQSPSAMINGEPHARLSPARF 143 >gi|83721159|ref|YP_442162.1| formate dehydrogenase subunit gamma [Burkholderia thailandensis E264] gi|257138351|ref|ZP_05586613.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis E264] gi|83654984|gb|ABC39047.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis E264] Length = 157 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 139 SPERFDALFDA 149 >gi|225572044|ref|ZP_03780908.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM 10507] gi|225040479|gb|EEG50725.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM 10507] Length = 168 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 8/147 (5%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R +S++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 20 DEIIEEY--GRKESSLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYSVATFYENFS 77 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143 P G ++VC T C +R + E ++ H+K H D + E V C GA Sbjct: 78 FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSHKK--HTTDDMMFTVETVSCLGA 134 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170 C AP + + + ++PE+ E+++ Sbjct: 135 CGLAPALNVNDVVHPKMSPEKALEMLE 161 >gi|310658218|ref|YP_003935939.1| fe hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824996|emb|CBH21034.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 159 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A+I +L +AQ G++ + + L + +V + +FY+ F P G + + V Sbjct: 25 ETALIEVLHKAQNLFGFIPKEVQLFIGEKLGVPASKVFGVVSFYSYFTTEPKG-KYVINV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +R + L+ + KP + S E + C GAC AP++M+ + Y Sbjct: 84 CMGTACFVRKADSLLRELEKVLCIKPGETTENKMYSIEALRCVGACGLAPVIMVNDEVYG 143 Query: 159 DLTPERLEEIIDAFS 173 +T + + +I+ ++ Sbjct: 144 KVTVDDIPKILAKYA 158 >gi|167581038|ref|ZP_02373912.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis TXDOH] Length = 157 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 139 SPERFDALFDA 149 >gi|303248402|ref|ZP_07334662.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302490200|gb|EFL50118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 165 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q G++ A+ + +L M + + +ATFY PVG + V Sbjct: 22 REAAVDVMYALQHHYGYLCDEAVHYASKLLGMTTLELESLATFYDYLYRRPVGHYV-IHV 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + + + + + P DG + C G C NAP ++I Y Sbjct: 81 CDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGMFTVLPSACIGNCHNAPTMLINGRFYN 140 Query: 159 DLTPERLEEII 169 LTPER++ ++ Sbjct: 141 KLTPERIDAVL 151 >gi|253577814|ref|ZP_04855086.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA] gi|251850132|gb|EES78090.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA] Length = 159 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R +++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 11 DEIIEHY--GRTAASLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145 P G ++VC T C +R + E ++ H D + E V C GAC Sbjct: 69 FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP + + + + +TPE+ E+++ Sbjct: 128 LAPTLTVNDEVHPKMTPEKAVELLN 152 >gi|260466531|ref|ZP_05812720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium opportunistum WSM2075] gi|259029680|gb|EEW30967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium opportunistum WSM2075] Length = 159 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 QP+S + +A V E+ P ++P+L QE+ G V + V+A+ L++ Sbjct: 3 MQPASTEIASRTAAIVQELKDVEGP------LLPILHGIQEEFGHVPHDVLPVIADGLNL 56 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 + V + TFY F+ P G R +++C C G + + + + D Sbjct: 57 SRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKVKQLLGIDFHETTRD 115 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 G+++ E V C G C +P M+ + L ++++EI+ Sbjct: 116 GSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIV 154 >gi|39997816|ref|NP_953767.1| bidirectional hydrogenase complex protein HoxE [Geobacter sulfurreducens PCA] gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, putative [Geobacter sulfurreducens PCA] Length = 191 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++ +L AQE G +S + VA L + RV +ATFY F L G + V VC Sbjct: 38 ALLEVLHVAQETFGCLSDELMTHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCT 96 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++ +++ N+ K +DG L+ V C G+C AP+V++ +T Sbjct: 97 GTACYVKRSAEIVTRLENEFDVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRC 156 Query: 161 TPERLEEIIDAF----STGQGDTIRP 182 TP+ + S + +T+RP Sbjct: 157 TPDSAAAAVRVMLAEKSPARAETVRP 182 >gi|160902611|ref|YP_001568192.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] gi|160360255|gb|ABX31869.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] Length = 154 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 1/127 (0%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L QE G++S I +A D+ R+ + +FY+ F L P G + V+VC + C Sbjct: 28 LHDIQETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTG-KYIVRVCDSVSCR 86 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 L L+ ++ + + D + E EC G C P++M+ Y LT + Sbjct: 87 LNESADLVRALKDYLKVEENETTKDKKFTLEVAECLGHCDEGPVMMVNDTYYTHLTVTKA 146 Query: 166 EEIIDAF 172 +I+D+ Sbjct: 147 IQILDSL 153 >gi|253997400|ref|YP_003049464.1| formate dehydrogenase subunit gamma [Methylotenera mobilis JLW8] gi|253984079|gb|ACT48937.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera mobilis JLW8] Length = 160 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++PLL Q+ G+V AA ++ L ++ V + TFY F+ G R +Q+C Sbjct: 28 ALMPLLHAIQDNIGYVPEAAYPQISKALALSVAEVHGVVTFYHHFRTHKPG-RNVMQICR 86 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L + ++ +D ++ E V C G C +P VM+ + Y + Sbjct: 87 AESCQAMGSEALEAHAKKCLNIDYHQTTADDAVTLEAVYCLGNCALSPSVMMNDEIYGRV 146 Query: 161 TPERLEEII 169 +P L+ +I Sbjct: 147 SPSDLDALI 155 >gi|167619116|ref|ZP_02387747.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis Bt4] Length = 151 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 15 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 73 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 74 AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 132 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 133 SPERFDALFDA 143 >gi|118116827|ref|XP_001236209.1| PREDICTED: hypothetical protein, partial [Gallus gallus] Length = 61 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 2/48 (4%) Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +PGP Sbjct: 16 EVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPGP 61 >gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein [Delftia acidovorans SPH-1] gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia acidovorans SPH-1] Length = 727 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +I LL Q+ G + AA+ +A+ L+++ V + ++Y F+ +P G R Sbjct: 39 ARRPGPLIELLHAVQDMLGHIPEAAVPRIADALNLSRAEVHGVISYYPHFRSTPAG-RHV 97 Query: 96 VQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +QVC C RG + L+ C + H ++DG ++ E V C G C ++P Sbjct: 98 LQVCRAEACQSRGADALLAHAGQALGCGSSGHGHEHGTSADGAVTLEPVYCLGLCASSPA 157 Query: 150 VMIGKDTYEDLTPERLEEII 169 VM+ + ++ L+ +I Sbjct: 158 VMLDGQPHAHVSANGLDALI 177 >gi|320161179|ref|YP_004174403.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] gi|319995032|dbj|BAJ63803.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] Length = 205 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 1/125 (0%) Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 +L Q Q G++S + +AN L + V + +FY+ F +P G ++ C T C Sbjct: 72 ILNEVQSQIGFISEPMQQYIANKLHVPVSTVHGVVSFYSFFTTTPRGKHT-IKFCMGTAC 130 Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164 + G +LIE + + P DG ++ E C GAC AP++++ ++ + P + Sbjct: 131 YVGGTPQLIEKAKQVLGIDPGETTPDGQITLELCRCVGACSQAPVIVVDEEIQGRVRPNK 190 Query: 165 LEEII 169 +++ Sbjct: 191 FPQLL 195 >gi|29375955|ref|NP_815109.1| NAD-dependent formate dehydrogenase, gamma subunit, putative [Enterococcus faecalis V583] gi|227518654|ref|ZP_03948703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX0104] gi|227553184|ref|ZP_03983233.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis HH22] gi|229545927|ref|ZP_04434652.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX1322] gi|229550121|ref|ZP_04438846.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis ATCC 29200] gi|255972898|ref|ZP_05423484.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T1] gi|255975953|ref|ZP_05426539.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T2] gi|256618968|ref|ZP_05475814.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200] gi|256762395|ref|ZP_05502975.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T3] gi|256853025|ref|ZP_05558395.1| predicted protein [Enterococcus faecalis T8] gi|256958879|ref|ZP_05563050.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256962027|ref|ZP_05566198.1| NADH dehydrogenase [Enterococcus faecalis Merz96] gi|256965225|ref|ZP_05569396.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704] gi|257082643|ref|ZP_05577004.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol] gi|257085352|ref|ZP_05579713.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1] gi|257086847|ref|ZP_05581208.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6] gi|257089782|ref|ZP_05584143.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis CH188] gi|257415998|ref|ZP_05592992.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis AR01/DG] gi|257419200|ref|ZP_05596194.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis T11] gi|257422722|ref|ZP_05599712.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis X98] gi|293383049|ref|ZP_06628967.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis R712] gi|293388210|ref|ZP_06632731.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis S613] gi|294779581|ref|ZP_06744975.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis PC1.1] gi|307271122|ref|ZP_07552405.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4248] gi|307273328|ref|ZP_07554573.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0855] gi|307277474|ref|ZP_07558566.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2134] gi|307279195|ref|ZP_07560253.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0860] gi|307288116|ref|ZP_07568126.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0109] gi|307291375|ref|ZP_07571259.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0411] gi|312900654|ref|ZP_07759951.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0470] gi|312904132|ref|ZP_07763300.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0635] gi|312907362|ref|ZP_07766353.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis DAPTO 512] gi|312909978|ref|ZP_07768826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis DAPTO 516] gi|312952392|ref|ZP_07771267.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0102] gi|29343417|gb|AAO81179.1| NAD-dependent formate dehydrogenase, gamma subunit, putative [Enterococcus faecalis V583] gi|227073911|gb|EEI11874.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX0104] gi|227177710|gb|EEI58682.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis HH22] gi|229304707|gb|EEN70703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis ATCC 29200] gi|229308995|gb|EEN74982.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX1322] gi|255963916|gb|EET96392.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T1] gi|255968825|gb|EET99447.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T2] gi|256598495|gb|EEU17671.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200] gi|256683646|gb|EEU23341.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T3] gi|256711484|gb|EEU26522.1| predicted protein [Enterococcus faecalis T8] gi|256949375|gb|EEU66007.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256952523|gb|EEU69155.1| NADH dehydrogenase [Enterococcus faecalis Merz96] gi|256955721|gb|EEU72353.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704] gi|256990673|gb|EEU77975.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol] gi|256993382|gb|EEU80684.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1] gi|256994877|gb|EEU82179.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6] gi|256998594|gb|EEU85114.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis CH188] gi|257157826|gb|EEU87786.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ARO1/DG] gi|257161028|gb|EEU90988.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis T11] gi|257164546|gb|EEU94506.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis X98] gi|291079714|gb|EFE17078.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis R712] gi|291082394|gb|EFE19357.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis S613] gi|294453371|gb|EFG21779.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis PC1.1] gi|306497606|gb|EFM67139.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0411] gi|306500852|gb|EFM70170.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0109] gi|306504320|gb|EFM73532.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0860] gi|306505739|gb|EFM74917.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2134] gi|306509855|gb|EFM78880.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0855] gi|306512620|gb|EFM81269.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4248] gi|310626390|gb|EFQ09673.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis DAPTO 512] gi|310629776|gb|EFQ13059.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0102] gi|310632608|gb|EFQ15891.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0635] gi|311289936|gb|EFQ68492.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis DAPTO 516] gi|311292135|gb|EFQ70691.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0470] gi|315027370|gb|EFT39302.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2137] gi|315029990|gb|EFT41922.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4000] gi|315033791|gb|EFT45723.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0017] gi|315036876|gb|EFT48808.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0027] gi|315147885|gb|EFT91901.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4244] gi|315150638|gb|EFT94654.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0012] gi|315153355|gb|EFT97371.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0031] gi|315155868|gb|EFT99884.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0043] gi|315157965|gb|EFU01982.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0312] gi|315164268|gb|EFU08285.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1302] gi|315166638|gb|EFU10655.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1341] gi|315170078|gb|EFU14095.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1342] gi|315174469|gb|EFU18486.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1346] gi|315575556|gb|EFU87747.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0309B] gi|315578477|gb|EFU90668.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0630] gi|315580002|gb|EFU92193.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0309A] gi|327535029|gb|AEA93863.1| putative NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis OG1RF] gi|329571420|gb|EGG53107.1| Respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1467] Length = 162 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 P R + +I L + +EG++ + ++VA L + RV EI +FY + P Sbjct: 20 PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQAKYV 77 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C +TPC G + EV + DG + + C GAC P++ I Sbjct: 78 -LKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKD 136 Query: 155 DTYEDLTPERLEEII 169 + LT E++ ++I Sbjct: 137 TVFSQLTEEKIYQLI 151 >gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM 6192] gi|306532049|gb|ADN01583.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM 6192] Length = 164 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YPP R +I ++ ++ +E VA LD+ + I +FY+ F P G Sbjct: 11 YPPRRDNLLLILHDIQDHNPRNYLPDDEVEEVARYLDIPVSELDGIISFYSMFSRRPRG- 69 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R +++C + C L G L + + K DG + E V C G C P +M+ Sbjct: 70 RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNCLGCCDKGPSLMV 129 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + + +T E+L+ +I+ + +G P Sbjct: 130 NDELHTRMTREKLDLLIEELARREGVAYEP 159 >gi|312144097|ref|YP_003995543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp. 'sapolanicus'] gi|311904748|gb|ADQ15189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp. 'sapolanicus'] Length = 147 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +++ L Q+ G++ IE +A +++ + +FY+ P G + +++ Sbjct: 14 EGSLLEELHNVQDTYGYIPENEIENLAEKFNLSRANAYGVISFYSMLYTEPTG-KYIIRI 72 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C L E L++ ++ + + + D + E VEC G C P++MI YE Sbjct: 73 CDSISCHLNESESLLKAVKSYLGIENNETSKDKKFTLEVVECLGHCAEGPVMMINDQIYE 132 Query: 159 DLTPERLEEIID 170 LT + EI++ Sbjct: 133 KLTKTKAIEILN 144 >gi|326790678|ref|YP_004308499.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] gi|326541442|gb|ADZ83301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] Length = 158 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S++I +L QE ++ ++ L M+ ++ +ATFY F L P G + +++C Sbjct: 22 SSIISILQDIQEIYRYIPEEIFPYLSEKLGMSTAKIYGVATFYENFSLEPKG-KYVIKIC 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYE 158 T C +R ++ R + +D L + E V C GAC AP++ I Y Sbjct: 81 DGTACHVRKSIPILNALRETLSLSEEKVTTDDLLFTVETVSCLGACGLAPVMTINDKVYG 140 Query: 159 DLTPERLEEII 169 +TPE+ + ++ Sbjct: 141 SMTPEKAKALL 151 >gi|227823605|ref|YP_002827578.1| formate dehydrogenase subunit gamma [Sinorhizobium fredii NGR234] gi|227342607|gb|ACP26825.1| NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium fredii NGR234] Length = 159 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V A + V+A L+++ V + TFY F+ P G R +++ Sbjct: 25 EGPLLPILHEIQDEFGYVPEACLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + + DG ++ E V C G C +P M+ + + Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143 Query: 159 DLTPERLEEII 169 L LE ++ Sbjct: 144 RLDDAELEALV 154 >gi|94272887|ref|ZP_01292198.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] Length = 171 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I L Q+ G++ A+ +A L + +V + TFY F L P G + V VC Sbjct: 6 GGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKGRHSCV-VC 64 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G +++ H K +DG LS C GAC AP V++ Sbjct: 65 LGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVL 117 >gi|94265733|ref|ZP_01289470.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] Length = 200 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I L Q+ G++ A+ +A L + +V + TFY F L P G + V VC Sbjct: 35 GGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKGRHSCV-VC 93 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G +++ H K +DG LS C GAC AP V++ Sbjct: 94 LGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVL 146 >gi|258516936|ref|YP_003193158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780641|gb|ACV64535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R + +I +L AQ+ G++ +A +D+ V + TFYT F P G R Sbjct: 54 GRERGELIRVLYGAQKIFGYLPPEVQAYIAAKMDIPISEVNGVVTFYTLFVTEPRG-RHT 112 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+VC T C ++G +++ + ++ DG + C GAC AP++ + ++ Sbjct: 113 VRVCTGTACYVKGAADIMDKFKQELKLDGRETGEDGLFTLTSTRCIGACGMAPVLTVDEE 172 Query: 156 TYEDLTPERLEEIIDAF 172 Y +LT + + I++ + Sbjct: 173 VYGNLTAKDVITILEKY 189 >gi|239815992|ref|YP_002944902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus S110] gi|239802569|gb|ACS19636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus S110] Length = 154 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L Q+ G V A+ ++A +++ V + ++Y F+ +P G R VQVC Sbjct: 21 LLPALHGIQDALGHVPPDAVPLIAEQFNLSRAEVHGVVSYYHHFRSAPAG-RLLVQVCRA 79 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G + L+ ++ ++DG S E V C G C ++P + + + + +T Sbjct: 80 EACKAMGADALLAHAEQRLGCGVHGTSADGQCSLEPVFCLGLCASSPAIAVNGEVHARIT 139 Query: 162 PERLEEI 168 P ++I Sbjct: 140 PALFDDI 146 >gi|144897649|emb|CAM74513.1| NADH dehydrogenase I chain E [Magnetospirillum gryphiswaldense MSR-1] Length = 152 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L QE+ G+V +AA+ ++A L+++ + + +FY +F+ S G R V+V Sbjct: 22 RGALLPMLHALQEEFGYVDQAAVPLLAAALNLSQAEIHGVISFYHEFRQSRSG-RHVVKV 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C RG + L+E + K+ SDG + E V C G C P ++ Sbjct: 81 CVAEACQARGSDTLVEHLKAKLGLDLGQTGSDGAFTLEAVYCLGNCALGPSALVDDRLLG 140 Query: 159 DLTPERLE 166 L+P RL+ Sbjct: 141 RLSPARLD 148 >gi|313200987|ref|YP_004039645.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Methylovorus sp. MP688] gi|312440303|gb|ADQ84409.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp. MP688] Length = 156 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q+ G+V + ++ L+++ + + TFY F+ P G R +Q+C C G Sbjct: 31 QDDVGYVPEESYGSISKALNLSVAEIHGVVTFYHHFRTHPPG-RHVIQICRAESCQSMGS 89 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 +L + + SDG+++ E V C G C +P + + ++ Y ++P+RL+ II Sbjct: 90 TELEAHAKASLGIDYHQTTSDGSITLEPVYCLGNCACSPAITVDEEVYGRVSPKRLDAII 149 >gi|86359440|ref|YP_471332.1| formate dehydrogenase subunit gamma [Rhizobium etli CFN 42] gi|86283542|gb|ABC92605.1| formate dehydrogenase, gamma subunit protein [Rhizobium etli CFN 42] Length = 159 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L + Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++C Sbjct: 28 LLPILHQVQQEFGYVPQQALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G + L E + + HQ L DG+++ E V C G C AP M+ + Y Sbjct: 87 EACQSMGGDALAERIKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 142 Query: 158 EDLTPERLEEII 169 L + E++ Sbjct: 143 GRLDDQLATELV 154 >gi|253998888|ref|YP_003050951.1| formate dehydrogenase subunit gamma [Methylovorus sp. SIP3-4] gi|253985567|gb|ACT50424.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp. SIP3-4] Length = 156 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q+ G+V + ++ L+++ + + TFY F+ P G R +Q+C C G Sbjct: 31 QDDVGYVPEESYGSISKALNLSVAEIHGVVTFYHHFRTHPPG-RHVIQICRAESCQSMGS 89 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 +L + + SDG+++ E V C G C +P + + ++ Y ++P+RL+ II Sbjct: 90 TELEAHAKASLGIDYHQTTSDGSITLEPVYCLGNCACSPAITVDEEVYGRVSPKRLDAII 149 >gi|296127183|ref|YP_003634435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira murdochii DSM 12563] gi|296018999|gb|ADG72236.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira murdochii DSM 12563] Length = 163 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I + Q+ G+V R + V+ +++ R+ EI TFY F + P ++ V Sbjct: 28 EGNLIMICHGIQKHYGYVPRNVAKYVSEQINIPLARIYEILTFYNYFTMEP-PAENNIAV 86 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDT 156 C T C L+G +L+E + K++ K + S D EEV C G C AP++ D Sbjct: 87 CMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKLEEVRCIGCCGLAPVITFNGDV 145 >gi|254413281|ref|ZP_05027052.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Microcoleus chthonoplastes PCC 7420] gi|196179901|gb|EDX74894.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Microcoleus chthonoplastes PCC 7420] Length = 197 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L +AQE G++ + VA L + RV +ATFY F L P GT V VC Sbjct: 66 LIEVLHKAQEAFGYLEEDVLLYVARGLKLPLSRVYGVATFYHLFSLKPGGTHTCV-VCTG 124 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G +++ + DG +S C GAC AP V+ Sbjct: 125 TACYVKGGGQVLSALEEHFGIQVGDTTPDGEMSLLSARCLGACGIAPAVVF 175 >gi|282895631|ref|ZP_06303756.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis brookii D9] gi|281199325|gb|EFA74190.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis brookii D9] Length = 170 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%) Query: 37 RCQ---SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93 RCQ A+I +L RA E G++ + +A L + RV +ATFY F L+P G + Sbjct: 28 RCQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVATFYHLFSLAPKG-K 86 Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + VC T C ++G + ++ I K DG +S C GAC AP V+ Sbjct: 87 HNCVVCTGTACYVKGSQAILTALETFIQIKAGDTTPDGEVSVMTARCLGACGIAPAVVFD 146 Query: 154 KDTYEDLTPE 163 + + T + Sbjct: 147 GEVLGNQTAQ 156 >gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 96/195 (49%), Gaps = 10/195 (5%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + A ++ +++RYP + ++P+++ +++G++S ++ +AN + M V Sbjct: 74 TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMHAPHVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134 + + Y F + HV +C CM++G +K+++ + K + H + +G + Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQIDRI 189 + + G CVN P ++I G D E LT + I ++ ++ +G T + I Sbjct: 191 FHGMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDNIEESLNSLKGKTYKWAKNNIVEQ 250 Query: 190 SSAPAGGLTSLLDNN 204 S G SLL+N+ Sbjct: 251 SLKSKGKEYSLLENH 265 >gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/171 (21%), Positives = 88/171 (51%), Gaps = 9/171 (5%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + A ++ +++RYP + ++P+++ +++G++S ++ +AN + M +V Sbjct: 74 TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMYAPQVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134 + + Y F + HV +C CM++G +K+++ + K + H + +G + Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + + G CVN P ++I G D E LT + I ++ ++ +G T + Sbjct: 191 FHAMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDSIEESLNSLKGKTYK 241 >gi|297539619|ref|YP_003675388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp. 301] gi|297258966|gb|ADI30811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp. 301] Length = 159 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++PLL Q+ G+V ++ + L ++ V + TFY F+ G R +Q+C Sbjct: 27 ALMPLLHAIQDNIGYVPESSYSQIGKALSLSVAEVHGVVTFYHHFRTHKPG-RHVMQICR 85 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L + ++ SD ++ E V C G C +P VM+ ++ Y + Sbjct: 86 AESCQSMGSEALEAHAKKCLNVDYHQTTSDDAITLEAVYCLGNCALSPAVMMDEEVYGRV 145 Query: 161 TPERLEEII 169 + E L+ +I Sbjct: 146 SAEDLDALI 154 >gi|167570806|ref|ZP_02363680.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis C6786] Length = 154 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 18 SLVAILHAIQDEAGYVPSACVEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 76 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 77 AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDELHAKM 135 Query: 161 TPERLEEIIDA 171 T ER + ++DA Sbjct: 136 TAERFDALLDA 146 >gi|319937312|ref|ZP_08011719.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807678|gb|EFW04271.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 163 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++S ++++VI R+ + + +L Q + G++ A+E ++ LD ++ Sbjct: 4 LNQKSLDFIDDVIYRHKDEK--GPIKLMLHEIQNELGYIPFEAMEKMSEALDEPIAKIYG 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWE 136 + TFY+QF P G + VC T C + G + ++++ ++ P++ S DG S + Sbjct: 62 VVTFYSQFTTEPKGKHV-ISVCLGTACYVNGSQTILDLLV-EMTGAPVNGTSQDGVFSID 119 Query: 137 EVECQGACVNAPMVMI 152 C GAC AP+V + Sbjct: 120 ATRCVGACGLAPVVSV 135 >gi|114765414|ref|ZP_01444529.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601] gi|114542257|gb|EAU45287.1| ATP synthase subunit E [Roseovarius sp. HTCC2601] Length = 155 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L QE G V AA+ ++A L++ V + +FY F+ +P G R V++C Sbjct: 25 LLPILHAIQEAYGHVPEAALPLIAETLNLTQAEVHGVMSFYHDFRKAPAG-RHVVKICRA 83 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C G L + K+ +DG ++ E V C G C AP MIG Sbjct: 84 EACQSMGAGALSDAVLEKLGIGWGGTTADGRVTVEAVYCLGLCACAPAAMIG 135 >gi|150398097|ref|YP_001328564.1| formate dehydrogenase subunit gamma [Sinorhizobium medicae WSM419] gi|150029612|gb|ABR61729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium medicae WSM419] Length = 159 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + +IP+L Q++ G+V ++ V+A L+++ V + TFY F+ P G R + Sbjct: 23 RLEGPLIPILHEIQDEFGYVPEESLPVIAQELNLSRAEVYGVVTFYHDFREHPAG-RHVL 81 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 ++C C G ++L E + + DG ++ E V C G C +P M+ + Sbjct: 82 KLCRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEL 141 Query: 157 YEDLTPERLEEIIDAF 172 + L E ++DA Sbjct: 142 HARLD----EAVLDAL 153 >gi|86748475|ref|YP_484971.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2] gi|86571503|gb|ABD06060.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 157 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L QE EGWVS A ++ A L + + +ATFY+Q SPVG + + Sbjct: 22 KAAMLEALKLVQEAEGWVSDAHLKEAAEALGVTTAEIDSLATFYSQIFRSPVGDTV-ILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156 C C L G + + + +++ DG + + C G C AP+ ++G + Sbjct: 81 CDGLSCFLCGGDAVRDAVMSRLGIGFGETTPDGKFTLINICCVGGCDLAPVALVGPERKL 140 Query: 157 YEDLTPERLEEII 169 LT + L+ +I Sbjct: 141 VGPLTADDLDALI 153 >gi|209551212|ref|YP_002283129.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536968|gb|ACI56903.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 159 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 9/123 (7%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +++P+L Q++ G++ + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGSLLPILHEVQDEFGYIPQEAVPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 C C G + L E + + HQ L DG+++ E V C G C AP M+ Sbjct: 84 CRAEACQSMGGDALAERVKTLLGIDFHQTTL----DGSVTLEPVYCLGLCACAPSAMLDG 139 Query: 155 DTY 157 + Y Sbjct: 140 EVY 142 >gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ +++RY + ++P+L QE G++ + ++ L + V + +FY+ + Sbjct: 23 VDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCQLKVPGSDVFGVMSFYSMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G ++ C + PC + G E ++ + ++ K +D + E C G C Sbjct: 81 TWQPKGKYV-IRFCESPPCHIAGAENMLHFMQEELGIKVGETTADSLFTLETTACLGICE 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP + I + + +LT +++ +I+ + G+ Sbjct: 140 VAPAMQINEVVHGNLTKDKIRQILADYRAGK 170 >gi|167563644|ref|ZP_02356560.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis EO147] Length = 157 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDEAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDELHAKM 138 Query: 161 TPERLEEIIDA 171 T ER + ++DA Sbjct: 139 TAERFDALLDA 149 >gi|186475494|ref|YP_001856964.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia phymatum STM815] gi|184191953|gb|ACC69918.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia phymatum STM815] Length = 170 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +A+ +E++ R+ + +++ LL Q+ G+V + +A ++++ V + T+ Sbjct: 5 NALAPDELVRRH--VQPGMSLVALLHAIQDDVGFVPPDTVAPLARTMNLSRAEVHGVITY 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSD----G 131 Y F+ SP VQ+C C G E L IE CR H+ H D G Sbjct: 63 YHHFRQSPAAPVT-VQLCRAEACRSMGTEALAQHIEARTGCRFDAHKHGAHDGHDHACDG 121 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + E V C G C +P +MI + + +TP++ + ++ A Sbjct: 122 AVGLESVYCLGQCALSPAMMINGELHARVTPQKFDALLAA 161 >gi|225621402|ref|YP_002722661.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira hyodysenteriae WA1] gi|225216223|gb|ACN84957.1| DH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira hyodysenteriae WA1] Length = 168 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 4/143 (2%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S E+ A + ++S++ + + +I + Q+ G+V R + V+ ++ R Sbjct: 6 SLLTQEDIADEIKSLVSKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEETNIPLAR 63 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTL 133 + EI TFY F L P ++ VC T C L+G +L+E + K++ K + S D Sbjct: 64 IYEILTFYNYFTLEPPAEN-NIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKY 122 Query: 134 SWEEVECQGACVNAPMVMIGKDT 156 EEV C G C AP++ ++ Sbjct: 123 KLEEVRCIGCCGLAPVITFNEEV 145 >gi|115523731|ref|YP_780642.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53] gi|115517678|gb|ABJ05662.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 157 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L Q EGWVS A + A +L + + +ATFY+ SPVG + + Sbjct: 22 KAAMLEALKLVQAAEGWVSDAHLAEAAGVLGVTTAEIDSLATFYSHIFRSPVGETV-LLL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C C L G + + + K+ DG + V C G C AP ++G D Sbjct: 81 CDGLSCYLNGADDVRDAVMQKLGIGFGETTPDGKFTLINVCCVGGCDRAPAALVGPD 137 >gi|323480623|gb|ADX80062.1| NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis 62] Length = 148 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 P R + +I L + +EG++ + ++VA L + RV EI +FY + P + Sbjct: 20 PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEP-QAKY 76 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C +TPC G + EV + DG + + C GAC P++ I Sbjct: 77 VLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKD 136 Query: 155 DTYEDLTPERL 165 + LT E++ Sbjct: 137 TVFSQLTEEKI 147 >gi|91975809|ref|YP_568468.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5] gi|91682265|gb|ABE38567.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 157 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L QE EGWVS A ++ A L + + +ATFY+Q PVG + + Sbjct: 22 KAAMVEALKLVQEAEGWVSDAHLKEAAQALGVTTAEIESLATFYSQIFRRPVGDTV-ILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156 C C L G + + + +++ DG + + C G C AP+ ++G + Sbjct: 81 CDGLSCYLCGGDAVRDAIMSRLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140 Query: 157 YEDLTPERLEEIIDA 171 LT + L+ +I A Sbjct: 141 VGPLTADDLDALIGA 155 >gi|217979754|ref|YP_002363901.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella silvestris BL2] gi|217505130|gb|ACK52539.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella silvestris BL2] Length = 161 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S+ +E +A ++E + P ++P+L QE+ G+V+ A+ ++A L+++ Sbjct: 8 ASYWNAERAAEIIHEHLGLEGP------MLPILHALQEEFGYVNGDAVPMIAKALNLSRA 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY F+ P G R +++C C G E+L + + +DG L Sbjct: 62 EVHGVTSFYHDFRHEPAG-RHVLKLCRGESCQSMGSEELARKFLTGLGIEWGGTTADGDL 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E + C G C +P M+ + L E L E ++ S Sbjct: 121 TVEAIYCLGLCACSPAAMLDDELIGALDEETLAEAVNTVSA 161 >gi|154505521|ref|ZP_02042259.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149] gi|153794179|gb|EDN76599.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149] Length = 164 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++IP++ Q + ++ + VA + ++ + +ATFY F P G ++V Sbjct: 28 QESLIPIIQDIQSEYRYLPPELLSYVAEKIGISEAKAYSVATFYENFSFEPKGKYV-IKV 86 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +R ++E +++ +D L + E V C GAC AP++ + Y Sbjct: 87 CNGTACHVRKSIPILERLYSELGISGEKNTTDDMLFTVETVSCLGACGLAPVLTVNDTVY 146 Query: 158 EDLTPERLEEII 169 +TP+ E+I Sbjct: 147 PKMTPDAAAELI 158 >gi|294140412|ref|YP_003556390.1| NADH dehydrogenase I subunit E [Shewanella violacea DSS12] gi|293326881|dbj|BAJ01612.1| NADH dehydrogenase I, E subunit [Shewanella violacea DSS12] Length = 228 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q+Q GWVS ++ +++ + ++ + +ATFY VG + C C L G Sbjct: 102 QQQRGWVSDTSLSLLSAYIQVSVAELDSVATFYNLIFRQAVG-EVVLHPCDGISCDLMGG 160 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ K+H P D + + C GAC AP+++ K Y LT ++ ++I Sbjct: 161 VEVRAAISQKLHINPGETTPDNRFTLIPLPCLGACDKAPVMIASKHVYPHLTLNKIAQLI 220 Query: 170 D 170 D Sbjct: 221 D 221 >gi|167837457|ref|ZP_02464340.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia thailandensis MSMB43] Length = 157 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCR-IDGGHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 139 SPARFDALFDA 149 >gi|296448074|ref|ZP_06889977.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus trichosporium OB3b] gi|296254431|gb|EFH01555.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus trichosporium OB3b] Length = 184 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +P+L QE+ G+V AA+ +A L+++ + + +FY F+ +P G R +++ Sbjct: 49 EGPALPILHAIQEEFGYVPEAAVPQIAQSLNISRAEMHGVVSFYHDFRRAPAG-RHVLKL 107 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G EK+ + ++ + +DG+L+ E V C G C ++P + + Sbjct: 108 CRAESCQSMGSEKIAKDFLERVKLEWGGTANDGSLTVEAVYCLGLCAHSPGALYDNEPIG 167 Query: 159 DLTPERLEEI 168 + E L+E+ Sbjct: 168 RVDAEMLDEL 177 >gi|150391793|ref|YP_001321842.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149951655|gb|ABR50183.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 159 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M L EE FQ EE + ++P+L AQ+ G + Sbjct: 1 MKKTSLTEENFQKLQIVMEEEKGE--------------KGPLMPVLHEAQKIFGCIPLEV 46 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + + + + + + TFY+QF L P G + VC T C ++G + +++ I Sbjct: 47 QKKICEEMKIPLSEIYGVITFYSQFSLEPKGDYV-IGVCMGTACYVKGAQPILDKVSELI 105 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K + DG S C GAC AP++ + +D Y L + I++ + Sbjct: 106 GAKAGCNSGDGRFSLVATRCIGACGLAPILTVNEDVYGRLKLTDIPGIVEKY 157 >gi|241206611|ref|YP_002977707.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860501|gb|ACS58168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 159 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++C Sbjct: 28 LLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G + L E + + HQ L DG ++ E V C G C AP VM+ + Y Sbjct: 87 EACQSMGGDALAERVKALLGIDFHQTTL----DGGVTLEPVYCLGLCACAPAVMLDGEVY 142 Query: 158 EDLTPERLEEII 169 + + E++ Sbjct: 143 GRVDDQTAAELV 154 >gi|15966764|ref|NP_387117.1| formate dehydrogenase subunit gamma [Sinorhizobium meliloti 1021] gi|307301592|ref|ZP_07581351.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti BL225C] gi|307316384|ref|ZP_07595828.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti AK83] gi|15076036|emb|CAC47590.1| Putative NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium meliloti 1021] gi|306898224|gb|EFN28966.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti AK83] gi|306903290|gb|EFN33879.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti BL225C] Length = 159 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +IP+L Q++ G+V ++ V+A L+++ V + TFY F+ P G R +++ Sbjct: 25 EGPLIPILHEIQDEFGYVPEESLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + + DG ++ E V C G C +P M+ + + Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143 Query: 159 DLTPERLEEII 169 L LE ++ Sbjct: 144 RLDETVLEALV 154 >gi|297616329|ref|YP_003701488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] gi|297144166|gb|ADI00923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] Length = 148 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+ F + G +++C + PC + G +++ ++ K DG + E Sbjct: 54 VATFYSMFSVKTRGKNV-IRICESAPCHIAGAAQVVAALEKELGIKMGETTPDGKFTLEF 112 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC G C P++ I Y D+TPE++ I+ + Sbjct: 113 TECVGQCQATPVITINGKPYGDITPEKIPAILAEY 147 >gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Shewanella woodyi ATCC 51908] Length = 562 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P SE + V ++I P R +I L R Q+ G +S I+ +A+ L++ Sbjct: 21 PKGRQLSEGAFNEVQQLIKDMPLRR--DLLIEYLHRVQDTFGHLSAPHIKALADHLNIGE 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F L G ++VC + C + G ++L + NK Sbjct: 79 AEVYEVASFYAHFDLIKEGQTPPPATTLRVCNSLSCTMAGADELADEL-NK--------- 128 Query: 129 SDGTLSWEEVE-----CQGACVNAPMVMIGKDTYEDLTPERLEEII--DAFST 174 TL +EV C G C AP V +G++ + TP +L++ I +AF+ Sbjct: 129 ---TLDNQEVRVLRAPCMGRCNTAPTVALGRNHIDHATPAKLQQAISSNAFTA 178 >gi|116254126|ref|YP_769964.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. viciae 3841] gi|115258774|emb|CAK09880.1| putative NAD-dependent formate dehydrogenase gamma subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 159 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHLLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG ++ E V C G C AP M+ + + Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTPDGGVTLEPVYCLGLCACAPAAMLDGEVHG 143 Query: 159 DLTPERLEEII 169 + +R E++ Sbjct: 144 RVDEQRAAELV 154 >gi|221632799|ref|YP_002522021.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159] gi|221155661|gb|ACM04788.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159] Length = 182 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 6/144 (4%) Query: 32 RYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 RY P Q A V+ AQ GWV A +++A L + RV + TFY F+ Sbjct: 24 RYRPRDHQEAQELVVGACQEAQHLYGWVPPQAAQLIAEHLGVTINRVYGLLTFYADFRTE 83 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-CQGACVNA 147 P G + +C C + G +K+++ R + SDG L+ + C GAC A Sbjct: 84 PPGEH-FLWLCHGAACYIAGSQKVVDALRTEYRLGEDGTTSDGLLTVHVFDGCLGACDLA 142 Query: 148 PMVMIGKDTY-EDLTPERLEEIID 170 P+ + Y L RL E+++ Sbjct: 143 PVAQLDHHEYIGQLDANRLRELVE 166 >gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 745 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 20/184 (10%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVG 91 SR + +I L Q++ G +S A + +A+ + +A+ V E+ATFY F + +P Sbjct: 222 SRRRDMLIEYLHLIQDKWGQISAAHLAALADEMKLAFAEVFEVATFYAHFDVVKEGAPDI 281 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 ++VC + C + G E L++ +NK + + C G C AP Sbjct: 282 APVTIRVCDSLTCAMLGAETLMKELKNK---------AGPGVRVVRAPCVGRCDTAPAAE 332 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 +G + + T ++ ++ A Q DT P S A G +LL NS + GK Sbjct: 333 VGHNFVDHAT---VDNVLAALK--QHDTHVHVPDYVEYESYIAQGGYTLL--NSLRSGKT 385 Query: 212 KKDD 215 K+D Sbjct: 386 SKED 389 >gi|225570604|ref|ZP_03779629.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM 15053] gi|225160617|gb|EEG73236.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM 15053] Length = 157 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +++IP++ Q + ++ + VA L + + +ATFY F P G ++V Sbjct: 21 HASLIPIIQDIQSEYRYLPPELLSYVAGKLGITEAKAYSVATFYENFSFEPKGKYV-IKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +R ++E +++ +D L + E V C GAC AP++ + Y Sbjct: 80 CDGTACHVRKSIPILERLYSELGLSKEKVTTDDMLFTLETVSCLGACGLAPVLTVNDKVY 139 Query: 158 EDLTPERLEEII 169 +TP+ E+I Sbjct: 140 PAMTPDAAAELI 151 >gi|197301315|ref|ZP_03166400.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC 29176] gi|197299633|gb|EDY34148.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC 29176] Length = 158 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +++IP++ Q + ++ + VA L + + +ATFY F P G + ++VC Sbjct: 22 ASLIPIIQDIQSEYRYLPPELLRYVAKKLGINEAKAYSVATFYENFSFEPKG-KYIIKVC 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYE 158 T C +R ++E +++ +D L + E V C GAC AP++ + Y Sbjct: 81 NGTACHVRKSIPILERLYSELGLSEEKATTDDMLFTLETVSCLGACGLAPVLTVNDKVYP 140 Query: 159 DLTPERLEEII 169 +TP+ E+I Sbjct: 141 GMTPDAAAELI 151 >gi|213401477|ref|XP_002171511.1| predicted protein [Schizosaccharomyces japonicus yFS275] gi|211999558|gb|EEB05218.1| predicted protein [Schizosaccharomyces japonicus yFS275] Length = 163 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 F S +++ RYP Q A +PLL AQ Q+G +V +AA+ +A++ RV Sbjct: 4 FDRRSLEIARQLLRRYPKEWAQGATLPLLDLAQRQQGNFVPQAALREIADMTKSTIARVR 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 A+ Y +LS G+ +VC + C +G + L + H + + D ++ E Sbjct: 64 ATASQYEYIRLSDSGS--PFRVCTSWMCEEKGAQAL------RKHAQREAKRLDVHINIE 115 Query: 137 EVECQGACVNAPMVMIGKDTYEDLT 161 C G C +AP++ YE+++ Sbjct: 116 SASCLGGCHHAPVLWFQDRLYENMS 140 >gi|134295065|ref|YP_001118800.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia vietnamiensis G4] gi|134138222|gb|ABO53965.1| formate dehydrogenase gamma subunit [Burkholderia vietnamiensis G4] Length = 166 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 10/150 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L E CR + H ++ ++ E V Sbjct: 67 TAPPA-RVTIQMCRAEACRSMGCEALAEHAQARTGCRFDAAHGDAADPHAPPDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G C +P + I + +TPE+ + ++ Sbjct: 126 CLGLCAQSPSMTINGVLHAKVTPEKFDALL 155 >gi|218509481|ref|ZP_03507359.1| formate dehydrogenase subunit gamma [Rhizobium etli Brasil 5] Length = 159 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++C Sbjct: 28 LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G + L E + + HQ L DG+++ E V C G C AP M+ + Y Sbjct: 87 EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 142 >gi|146341845|ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS278] gi|146194651|emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp. ORS278] Length = 158 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+ + S+ + A +P+L QE G+V AI ++A+ L+++ V + TFY F+ Sbjct: 15 EIIAEH--SQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEVYGVFTFYHDFRG 72 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G R +++C C G + L K+ + +D ++ E + C G C A Sbjct: 73 KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLEPIYCLGLCATA 131 Query: 148 PMVMIGKDTYEDLTPERLEEII 169 P MI L R++ ++ Sbjct: 132 PSAMIDGRLVGRLDEARIDALV 153 >gi|327188942|gb|EGE56134.1| formate dehydrogenase subunit gamma [Rhizobium etli CNPAF512] Length = 182 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 9/132 (6%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++C Sbjct: 51 LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 109 Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G + L E + + HQ L DG+++ E V C G C AP M+ + Y Sbjct: 110 EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 165 Query: 158 EDLTPERLEEII 169 + + E++ Sbjct: 166 GRVDDQLATELV 177 >gi|163751849|ref|ZP_02159064.1| ATP synthase subunit E [Shewanella benthica KT99] gi|161328265|gb|EDP99427.1| ATP synthase subunit E [Shewanella benthica KT99] Length = 178 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q+Q GWVS A + +++ + ++ + +ATFY VG + C C L G Sbjct: 52 QQQRGWVSDACLSILSAYIHVSIADLDSVATFYNLIFRQAVGEIV-LHPCDGISCDLMGG 110 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ K+H +P D + + C GAC AP+++ K Y LT + ++I Sbjct: 111 VEVRAAISQKLHIEPGETTPDKRFTLIPLPCLGACDKAPVMIASKQVYPHLTVRNIAQLI 170 Query: 170 D 170 D Sbjct: 171 D 171 >gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 641 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP + Q ++P+++ +++G++S +I ++ L M ++ Sbjct: 75 YNSNEAAGLDEILAKYP--KEQEYLLPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIDS 132 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSW 135 I + Y F + AHV +C CM++G +L++ + H DG+ + Sbjct: 133 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 191 Query: 136 EEVECQGACVN-APMVMIGKD--TYEDLTPERLEEIID 170 + G CVN AP +MI + Y + LE+ ID Sbjct: 192 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNID 229 >gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] Length = 620 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 V+ L ++ GW+S A+ + L ++ V +ATFY F +P R V VC Sbjct: 56 VMEALHAVNDRVGWISPGALNYIGKRLSVSAADVYSVATFYGLFSTNPRPKRV-VHVCTD 114 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM---IGKDTYE 158 CM RG ++L K+ + W+ C G C AP + G +E Sbjct: 115 IACMARGSKELCASLEKKLGP------ASAMTGWKHSPCLGVCERAPAALAVEAGDPPHE 168 Query: 159 DLT-PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 L P ++E++ A + G P I + A GL L Sbjct: 169 HLIGPATMDEVVLALNDGPEALAAEAPPIMAVPQAGQDGLMLL 211 >gi|325262542|ref|ZP_08129279.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5] gi|324032374|gb|EGB93652.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5] Length = 157 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+++IP++ Q + ++ + VA L + + +ATFY F P G + ++V Sbjct: 21 QASLIPIIQDIQTEYRYLPPELLSYVAGKLGINEAKAYSVATFYENFSFEPKG-KYIIKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157 C T C +R +++ +++ +D L + E V C GAC AP++ + Y Sbjct: 80 CDGTACHVRKSIPILDRLYSELGLSKEKATTDDMLFTLETVSCLGACGLAPVLTVNDKVY 139 Query: 158 EDLTPERLEEII 169 +TP+ ++I Sbjct: 140 PAMTPDTAADLI 151 >gi|107022111|ref|YP_620438.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia cenocepacia AU 1054] gi|116689056|ref|YP_834679.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia HI2424] gi|105892300|gb|ABF75465.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia AU 1054] gi|116647145|gb|ABK07786.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia HI2424] Length = 166 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A +L+++ V + T+Y F+ +P RA Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKVLNLSRAEVHGVLTYYHHFRTAPPA-RAT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H + ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155 >gi|150018924|ref|YP_001311178.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium beijerinckii NCIMB 8052] gi|149905389|gb|ABR36222.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium beijerinckii NCIMB 8052] Length = 164 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 4/133 (3%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ +I ++ Q++ ++ A+ +A L ++ +V +ATFY F L P G + +++ Sbjct: 23 KTQIITIMQEIQKEYRYLPEEALCYIAKELKISEAKVYGVATFYENFSLEPKG-KYVIRI 81 Query: 99 CGTTPCMLRGCEKLIEVCRNK--IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 C T C +R + ++ +++ + +K L + D + E V C GAC AP+ + Sbjct: 82 CDGTACHVRKSDPILSEFKSELGLSEKKLTTD-DMHFTVETVSCLGACGLAPVCTVNDVV 140 Query: 157 YEDLTPERLEEII 169 Y +TPE+ +++ Sbjct: 141 YPSMTPEKARKLV 153 >gi|269926645|ref|YP_003323268.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790305|gb|ACZ42446.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum terrenum ATCC BAA-798] Length = 174 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 2/156 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +++ SEE VN ++ + ++IP L + Q ++ A +++ + Sbjct: 7 TWTGSEEDRARVNSILDEFEGQDPMESLIPALHKIQAAYRYIPEEAGHIISERWHIPETD 66 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + + +FY+ F P G R + +C C G +L EV ++ + DG + Sbjct: 67 IFNVVSFYSDFSTEPRGKRV-LWICEGAACYFMGGPQLGEVAQSVLGIPYNETTPDGEWT 125 Query: 135 WEEVE-CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + C G C AP+V + Y L+PE L +I Sbjct: 126 LRRADFCFGVCHRAPLVELDHHIYGPLSPEELRALI 161 >gi|116750138|ref|YP_846825.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699202|gb|ABK18390.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 190 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+I +L AQE G+++ + A L + + V +ATFY F L P G + + V Sbjct: 36 QDALIEVLTSAQEAFGYLTEDVLIYTARQLKLPFSWVYGVATFYHFFSLKPQGEHSCI-V 94 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + +++E + + K DG L+ C G C AP+ ++ Sbjct: 95 CLGTACYVGKSNEIVEALEKEFNVKAGQTTEDGKLTVTTTRCLGCCGLAPVAVLDNQVLG 154 Query: 159 DLTPE 163 PE Sbjct: 155 KELPE 159 >gi|254252941|ref|ZP_04946259.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia dolosa AUO158] gi|124895550|gb|EAY69430.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia dolosa AUO158] Length = 166 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q++ G+V + + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDEAGYVPQGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H ++ ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCEALAAHAEARTGCRFDAGHGDAASAHARADVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGALHAKVTPEKFDALL 155 >gi|307544489|ref|YP_003896968.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581] gi|307216513|emb|CBV41783.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581] Length = 163 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q++ G+V AA+ ++A L++ V + +FY F+ S G+ V++C Sbjct: 25 ALLPILHAIQDRVGFVPDAAVPIIAESLNLTRAEVHGVISFYHHFRTSRPGSHV-VRICR 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G L ++ + D ++ E V C G C P + + + + Sbjct: 84 AEACQAMGARALEAHAKSSLEVDYHQTTRDQEITLEAVYCLGNCACGPSICVDDRVHGRV 143 Query: 161 TPERLEEIIDAFST 174 T E + ++D T Sbjct: 144 TTETFDRLVDDLRT 157 >gi|163846759|ref|YP_001634803.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222524573|ref|YP_002569044.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp. Y-400-fl] gi|163668048|gb|ABY34414.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222448452|gb|ACM52718.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp. Y-400-fl] Length = 173 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I +L +AQE G++S + VA L + RV +ATFY F L+P G + VC Sbjct: 38 ALIEVLHKAQELYGFLSPELLGEVARRLKLPPSRVYGVATFYHFFSLAPQGEHS-CTVCL 96 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C +RG L+ + ++DG S C GAC AP V++ Sbjct: 97 GTACYVRGAAILLRELEALSGVQAGRTSADGRFSLLTARCLGACGIAPAVVL 148 >gi|225026579|ref|ZP_03715771.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353] gi|224956071|gb|EEG37280.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353] Length = 158 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 2/132 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++++IP++ Q + ++ + VA+ + + + +ATFY F P G + ++V Sbjct: 21 EASLIPIIQDIQSEYRYLPPELLSYVADQIGITEAKAFSVATFYENFSFEPKG-KYVIKV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C T C +R ++E +++ K D + E V C GAC AP++ + Y Sbjct: 80 CDGTACHVRKSTTILERIYSELGLSKDKVTTEDMLFTVETVSCLGACGLAPVLTVNDKVY 139 Query: 158 EDLTPERLEEII 169 +TP+ +++ Sbjct: 140 PSMTPDDAAQLL 151 >gi|148254530|ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1] gi|146406703|gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1] Length = 158 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+ + S+ + A +P+L QE G+V AI ++A L+++ V + TFY F+ Sbjct: 15 EIIAEH--SKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEVYGVFTFYHDFRA 72 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G R +++C C G + L K+ + +D ++ E + C G C A Sbjct: 73 KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLEPIYCLGLCATA 131 Query: 148 PMVMIGKDTYEDLTPERLEEII 169 P M+ L R++ ++ Sbjct: 132 PSAMLDGRLVGRLDEARIDALV 153 >gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 1198 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP R ++P+++ +++G++S +I ++ L M ++ Sbjct: 632 YNPNEAAGLDEILAKYPKER--EYLLPIIIEEHDKKGYISDPSIVKISEYLGMYPAQIDS 689 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSW 135 I + Y F + AHV +C CM++G +L++ + H DG+ + Sbjct: 690 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 748 Query: 136 EEVECQGACVN-APMVMIGKD--TYEDLTPERLEEIID 170 + G CVN AP +MI + Y + LE+ ID Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNID 786 >gi|226227789|ref|YP_002761895.1| putative formate dehydrogenase gamma subunit [Gemmatimonas aurantiaca T-27] gi|226090980|dbj|BAH39425.1| putative formate dehydrogenase gamma subunit [Gemmatimonas aurantiaca T-27] Length = 166 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L + Q G+VS+ A+ +A +++ V + TFYT + +PVG +Q+C Sbjct: 26 LLPVLQQVQATVGFVSQDAMRQIAQAFNISRADVYGVVTFYTDLREAPVGQYV-MQLCMA 84 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C GC +L + + +D + E C G C P + I +T Sbjct: 85 EACQSVGCRELAAHATHVLGVPLGQTTADHRIHLEAAYCFGNCALGPTMRIDDRIVGGVT 144 Query: 162 PERLEEII 169 P R +E++ Sbjct: 145 PARFDELL 152 >gi|114328596|ref|YP_745753.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Granulibacter bethesdensis CGDNIH1] gi|114316770|gb|ABI62830.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Granulibacter bethesdensis CGDNIH1] Length = 159 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L Q + G+V + ++A+ L+++ V + +FY F+ P G R +++ Sbjct: 26 EGAMLPILHDLQAEFGYVPEEVVPMLADALNVSRAEVHGVISFYHDFKNHPPG-RHVLKL 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L + R K+ +G+++ E V C G C AP M+ + + Sbjct: 85 CRAEACQAMGADTLADHVREKLRVDWHGTTVNGSVTLEPVFCLGLCACAPAAMLDNELHG 144 Query: 159 DLTPERLEEIIDAFS 173 L + ++ ++++ + Sbjct: 145 RLDQDHVDTLLESVA 159 >gi|114566321|ref|YP_753475.1| NADH dehydrogenase I subunit E [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337256|gb|ABI68104.1| NADH dehydrogenase I chain E [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/145 (20%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++I+ Y + +I Q + ++ + A+ A + ++ + +ATFY+ + Sbjct: 6 DIIANYKDKK--GGIIEAYHALQREFNYIPQKAVAEAARVFGVSEAQAYGVATFYSYLSV 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G + +++C + PC + G +K+++ + + K +DG + E EC G C Sbjct: 64 EKRG-KYIIRMCESAPCHVAGADKVLKAMEDYLGIKVGETTADGKFTLELCECVGQCQAT 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++ + +++ E++ EI+ A+ Sbjct: 123 PVITVNSQPVFNVSSEKIPEILSAY 147 >gi|71280406|ref|YP_268784.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H] gi|71146146|gb|AAZ26619.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea 34H] Length = 168 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q ++ + AI +VA L + + TFY FQL+ G R +++C Sbjct: 27 ALLPILHDIQHHFDYIPKKAIAIVAQGLQQTEAEIYGVITFYAHFQLNKPG-RHIIEICR 85 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G + L + ++++ D + E V C G C +P + + + Y + Sbjct: 86 GEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLEPVYCLGNCACSPSIKVADNVYGRM 145 Query: 161 TPERLEEIIDAFS 173 E+ ++ + S Sbjct: 146 NSEKFAKLSEQLS 158 >gi|160893747|ref|ZP_02074531.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50] gi|156864732|gb|EDO58163.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50] Length = 160 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP++ Q + ++ + VA+ L++ + +ATFY F G + ++VC Sbjct: 24 LIPIIQDIQSEYKYLPPELLRYVADKLNITEAKAYSVATFYENFSFDAKG-KFILKVCDG 82 Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +R ++ ++ K H D + E V C GAC AP++ + + + Sbjct: 83 TACHVRKSMDILNQLYKELGLSKEKHTTDDMMFTLETVSCLGACGLAPVMTVNDVVHPAM 142 Query: 161 TPERLEEIIDAFSTG 175 TPE++ +I G Sbjct: 143 TPEKVTALIAELKEG 157 >gi|119475814|ref|ZP_01616166.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143] gi|119450441|gb|EAW31675.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143] Length = 200 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L Q + G + + +A++ +++ V + +FY F+ +P G R +Q+ Sbjct: 60 EGALLPVLHSIQTEFGHIPPDCVGQIADLFNVSAAEVHGVLSFYPFFRSTPPG-RHTIQI 118 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTY 157 C C G +L+E H+ S DG + E V C G C +P + +G + Sbjct: 119 CRAEACQSMG-SRLLERHAKLTLGIDFHQTSADGEFTLEPVYCLGNCACSPSIRVGTQIF 177 Query: 158 EDLTPERLEEIIDAFST 174 + R + +ID T Sbjct: 178 SHVDSARFDALIDDLQT 194 >gi|160936611|ref|ZP_02083978.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC BAA-613] gi|158440402|gb|EDP18147.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC BAA-613] Length = 164 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 42 VIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++ +L Q G+ + +VA + M RV +I TFY + P R ++VC Sbjct: 26 LLAILYELQNASGYNYIDEETAALVAEEVGMNPTRVYDIITFYAMLKTEP-KARYVLKVC 84 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 +TPC E++ ++ + ++ DG ++ + C GAC P++ + Y + Sbjct: 85 NSTPCHFSRSEEIAQILKEELGVGIGETTEDGVFAYHYIPCVGACDIGPVIKVKDTVYGN 144 Query: 160 LTPERLEEIIDAFSTGQ 176 L ++ +++ +G+ Sbjct: 145 LDRRKIRQLLADLRSGK 161 >gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] Length = 570 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG---- 91 S + +I L Q++ G +S A + +A+ + +++ V E+ATFY F + G Sbjct: 47 SHRRDMLIEHLHLIQDKWGQISAAHLAALADEMKLSFPEVFEVATFYAHFDVVKEGEPDI 106 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 ++VC + C + G + L++ +NK + + C G C +AP+ Sbjct: 107 PPLTIRVCDSLTCAMLGADTLMKELQNK---------AGPEVRVVRAPCVGRCDHAPVAE 157 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 +G + ++ TP ++ D +GDT P S A G +LL NS + G+ Sbjct: 158 VGHNFIDEATPAKVLAAAD-----EGDTHAHVPDYIEYDSYVAQGGYALL--NSLRSGQT 210 Query: 212 KKDD 215 K+D Sbjct: 211 SKED 214 >gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 572 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G A Sbjct: 48 RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAVP 107 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V+VC + C + G E L+ + +I G + C G C +AP + Sbjct: 108 ALTVRVCDSLTCAMHGAEALLATLQAEI---------GGPVRVVRAPCVGLCDHAPAAEV 158 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200 G + TPER++ + A GDT P +D + AGG +L Sbjct: 159 GHNFLPRATPERVKAAVAA-----GDTHPHIPDYVDYDAYRAAGGYRTL 202 >gi|114705204|ref|ZP_01438112.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi HTCC2506] gi|114539989|gb|EAU43109.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi HTCC2506] Length = 157 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F E+ AI + E + ++P+L + G++ A+ ++A L++ V Sbjct: 7 FDEDDAIALVE-----EYKHLEGPLLPILHAFSHRYGYIGDEAVRLIAGELNLTRAEVYG 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY F+ P G R ++VC C G + + + + K ++DG ++ E Sbjct: 62 VVSFYHDFKREPHG-RHVLKVCRAEACQAAGGDAIADSLEKALGIKFGETSADGAVTLEA 120 Query: 138 VECQGACVNAPMVMI 152 V C G C AP M+ Sbjct: 121 VYCLGLCATAPSAML 135 >gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 567 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G A Sbjct: 43 RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAVP 102 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V+VC + C + G E L+ + +I G + C G C +AP + Sbjct: 103 ALTVRVCDSLTCAMHGAEALLATLQAEI---------GGPVRVVRAPCVGLCDHAPAAEV 153 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200 G + TPER++ + A GDT P +D + AGG +L Sbjct: 154 GHNFLPRATPERVKAAVAA-----GDTHPHIPDYVDYDAYRAAGGYRTL 197 >gi|147677714|ref|YP_001211929.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273811|dbj|BAF59560.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 192 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +I +L +AQ+ G++ +A L + V + TFY+ F P G + + V Sbjct: 49 KGQLIRILQKAQDIFGYLPDDVQAFIAERLRVPVAEVNGVVTFYSLFSTRPKG-KYIINV 107 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +++++ + ++ DG + + C GAC AP++ + Sbjct: 108 CMGTACYVKGAQQVMDALKKRLKIDEGETTPDGLFTLKSTRCVGACGLAPILAVNGKVQG 167 Query: 159 DLTPERLEEIIDAFSTGQ 176 + P +++E+I G+ Sbjct: 168 MVDPGKIQELIKNCRKGE 185 >gi|187250941|ref|YP_001875423.1| putative FeFe hydrogenase subunit HydC [Elusimicrobium minutum Pei191] gi|186971101|gb|ACC98086.1| Putative FeFe hydrogenase subunit HydC (NuoE) [Elusimicrobium minutum Pei191] Length = 163 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++I +L Q+ G+V R ++ ++++ ++ E+ +FY F+L+P + + V Sbjct: 25 QGSLIMILHEIQDTLGYVPREISLELSQLINVPLAQIYEVLSFYHFFKLTP-PAKYRISV 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C L+G ++I+ + K + D S V C G C AP+V + + Sbjct: 84 CTGTACYLKGAPEIIKEFTRLLGIKEGEQTKDSNFSLTGVRCVGCCGLAPVVSVNGKIFG 143 Query: 159 DLTPERLEEIIDAFSTGQGD 178 + ++ I+ + GQ + Sbjct: 144 AVKATEVKNIVQEYK-GQNN 162 >gi|302344256|ref|YP_003808785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] gi|301640869|gb|ADK86191.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] Length = 170 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I +L ++ ++ A+ ++ L ++ + EI TFY+ F L P G R + VC Sbjct: 39 LIMILQAISKRYNYLPLPALRYLSAKLGVSMSGIYEIVTFYSMFCLEPRG-RNIISVCLG 97 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG E++ + + + K +D + E V C G C P+V+I + + +T Sbjct: 98 TACHVRGAERIKQSVEDYLGIKAGETTADFKFTLETVRCIGCCSLGPVVVIDEKYHGGMT 157 Query: 162 PERL 165 +++ Sbjct: 158 SDKM 161 >gi|170740590|ref|YP_001769245.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium sp. 4-46] gi|168194864|gb|ACA16811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium sp. 4-46] Length = 157 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 ++ + A +P+L QE+ G+V + A+ ++A+ L+++ V TFY F+ P G R Sbjct: 20 AQLEGATLPILHALQERFGYVDQGAVALIADALNLSKAEVHGCITFYHDFRAEPAGRRV- 78 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V++C C G + L + +DG ++ E V C G C P ++ Sbjct: 79 VKLCRAEACQAVGADALHAEILGRYGVGWHGTTADGAVTIEPVFCLGLCACGPAALV 135 >gi|71280180|ref|YP_270680.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H] gi|71145920|gb|AAZ26393.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea 34H] Length = 163 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q ++ A+ ++A L+++ V + +FY F+ G +++C Sbjct: 25 AMLPILHAIQNDLSFIPSNALPLIAKALNVSKAEVHGVISFYHHFRTEEPGAHV-IEICR 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G L E + + + D + E V C G C +P + IG D + +L Sbjct: 84 GESCQAMGSRALEENIKQNLSIDYHQTSKDRQYTLEPVYCLGNCACSPAMRIGDDIHGEL 143 Query: 161 TPERLEEIIDAFST 174 ++ E+II + +T Sbjct: 144 DLQKFEQIIASLNT 157 >gi|260427116|ref|ZP_05781095.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp. SE45] gi|260421608|gb|EEX14859.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp. SE45] Length = 155 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L QE V AA+ ++A L++ V + +FY F+ +P G R V++C Sbjct: 25 LLPILHALQEAYDHVPEAALGMIAETLNLTKAEVHGVMSFYHDFRKAPAG-RHVVKICRA 83 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G L + K+ SDG ++ E V C G C AP M+ Sbjct: 84 EACQSMGANALSDAVLEKLGIGWGGTTSDGLVTVEAVYCLGLCACAPAAMVDDRLIARAD 143 Query: 162 PERLEEIID 170 RLE+ ++ Sbjct: 144 AARLEKALE 152 >gi|225850512|ref|YP_002730746.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Persephonella marina EX-H1] gi|225645271|gb|ACO03457.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Persephonella marina EX-H1] Length = 162 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A+IP L ++ + A+ +A+ L + + I +FY F+ R H+++ Sbjct: 26 QQAIIPSLHDILDKYRDIPDQAVFELADYLKVPPSDIEGIVSFYDMFR-HKKNARNHIRI 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C PC L + L+E +N + DG E VEC G+C AP +I D Y+ Sbjct: 85 CRNLPCHLGKYQLLLEKIKNLTGADIGKNSPDGKWYIELVECIGSCAIAPAFLINDDLYD 144 >gi|91975105|ref|YP_567764.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisB5] gi|91681561|gb|ABE37863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 156 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 +L QE G+V AA +VA L+++ + + TFY F+ P G R +++C C Sbjct: 28 ILHALQEAFGYVPEAAEPMVAQALNLSRAEIHGVVTFYPDFRREPPG-RHVLKLCRAEAC 86 Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164 G + L ++ ++DG +S E V C G C AP M+ L R Sbjct: 87 QAAGGDALAAQAETRLGVTFGATSADGAVSLEPVYCLGLCATAPSAMLDDRVIGRLDTHR 146 Query: 165 LEEII 169 L+ ++ Sbjct: 147 LDALM 151 >gi|170698429|ref|ZP_02889502.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria IOP40-10] gi|170136682|gb|EDT04937.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria IOP40-10] Length = 166 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H ++ G ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGADAHAPGDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERL 165 + + + +TPE+ Sbjct: 135 SMTVNGVLHAKVTPEKF 151 >gi|307292623|ref|ZP_07572469.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium chlorophenolicum L-1] gi|306880689|gb|EFN11905.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium chlorophenolicum L-1] Length = 155 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 1/133 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R + ++PLL QE+ G++ AAI +A L+++ V + TFY F+ +P G R Sbjct: 18 GRTRDRLLPLLHMLQEEIGFIDDAAIPAIAENLNLSRADVHGVVTFYHDFRRAPAG-RHV 76 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+ C C RG + + ++ DG ++ E + C G C P ++ Sbjct: 77 VKFCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIYCLGLCAIGPNALVDGK 136 Query: 156 TYEDLTPERLEEI 168 + LE I Sbjct: 137 PVARIDQAALERI 149 >gi|254431436|ref|ZP_05045139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium sp. PCC 7001] gi|197625889|gb|EDY38448.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium sp. PCC 7001] Length = 178 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-SPVGTRAHVQVC 99 A+I +L + QE G++ A+E VA L + RV +A+FY F+L +P R VC Sbjct: 31 ALIEVLHQVQELYGYLPPGALEQVARELKLPLARVHGVASFYHLFRLEAPTAHR--CAVC 88 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T C ++G +L ++ + +G + E V C GAC AP++++ Sbjct: 89 LGTACFVKGGGELAARLEQRLGLQLDDPAGNGNWALEHVSCLGACGQAPVLVV 141 >gi|115526638|ref|YP_783549.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisA53] gi|115520585|gb|ABJ08569.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 160 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + +L QE G+V + AI ++A L+++ V + TFY F+ +P G R +++ Sbjct: 26 EGATLVILHAMQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYHDFRKAPAG-RHVLKL 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L + +DG +S E + C G C AP M+ Sbjct: 85 CHAEACQAAGGDALAARAEKTLGISVGDTRADGVVSLEPIYCLGLCATAPSAMLDGRLIG 144 Query: 159 DLTPERLEEII 169 LT L+ ++ Sbjct: 145 RLTEAGLDALL 155 >gi|190893705|ref|YP_001980247.1| formate dehydrogenase, gamma subunit [Rhizobium etli CIAT 652] gi|190698984|gb|ACE93069.1| formate dehydrogenase protein, gamma subunit [Rhizobium etli CIAT 652] Length = 159 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++C Sbjct: 28 LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G + L E + + HQ L DG+++ E V C G C AP M+ + + Sbjct: 87 EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVH 142 >gi|330501360|ref|YP_004378229.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina NK-01] gi|328915646|gb|AEB56477.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina NK-01] Length = 164 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P F+ E+ A EV++ + R Q A++P+L Q++ G V + ++A L ++ Sbjct: 5 PQRFA-PEQCAAVAREVLAAH---RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLS 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V + +FY F+ +P G R +++C C G + L +K+ DG Sbjct: 61 RAEVHGVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTY 157 +LS+E V C G C AP VM+ + + Sbjct: 120 SLSFEPVYCLGNCACAPSVMLNGELH 145 >gi|170693703|ref|ZP_02884861.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia graminis C4D1M] gi|170141485|gb|EDT09655.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia graminis C4D1M] Length = 161 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 23 AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 AI E+++R+ P R +++ +L Q++ G+V AA+ +A ++++ V + T+ Sbjct: 6 AIAPEELVARHAQPGR---SLLAVLHAIQDELGYVPPAAVPPLARTMNLSRAEVHGVITY 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSW 135 Y F+ P VQ+C C G E L + CR K + + Sbjct: 63 YHHFRTQPAAPVT-VQLCRAEACRSMGTEALAQHIESHTGCRFDAEHK-----AGAAVEL 116 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P +M+ + +TP++ + I A S Sbjct: 117 ESVYCLGQCALSPAMMVNGTLHAKITPQKFDAIFAAAS 154 >gi|323526973|ref|YP_004229126.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1001] gi|323383975|gb|ADX56066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1001] Length = 161 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 23 AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 AI E+++R+ P R +++ +L Q++ G+V AA+ +A +++++ V + T+ Sbjct: 6 AIAPEELVARHAQPGR---SLVAVLHAIQDELGYVPPAAVAPLARVMNLSRAEVHGVITY 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLS 134 Y F+ P VQ+C C G E L + CR + H+ + + Sbjct: 63 YHHFRTQPAAAVT-VQLCRAEACRSMGTEALAQHIESHTGCRFDAAHE------AGAAVE 115 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P +M+ + +TP++ + I A S Sbjct: 116 LESVYCLGQCALSPAMMVNGTLHARVTPQKFDAIFAAAS 154 >gi|87198756|ref|YP_496013.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium aromaticivorans DSM 12444] gi|87134437|gb|ABD25179.1| formate dehydrogenase gamma subunit [Novosphingobium aromaticivorans DSM 12444] Length = 137 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q A++P+L Q G VS AI VA+ L+++ V + +FY F+ SP RA +++ Sbjct: 15 QGALLPILHDVQAAFGHVSEDAIRAVASALNLSRADVFGVVSFYHDFRQSP-EPRAVLKL 73 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C RG E L + H K E V C G C P M + Sbjct: 74 CRAEACQARGVEALAAQLPDNPHVK-----------IEAVYCLGLCSVGPNAMAEGKVHA 122 Query: 159 DLTPERLEEIIDAFS 173 L +L ++++ + Sbjct: 123 RLDASKLGALVESLA 137 >gi|294146590|ref|YP_003559256.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium japonicum UT26S] gi|292677007|dbj|BAI98524.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium japonicum UT26S] Length = 155 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R + ++PLL QE+ G++ AI+++A L++ V + TFY F+ +P G R Sbjct: 18 GRTRDRLLPLLHMLQEEIGFIDGNAIKIIAEKLNLTRADVHGVVTFYHDFRRAPAG-RHV 76 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V++C C RG + + ++ DG ++ E + C G C P ++ Sbjct: 77 VKLCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIYCLGLCAVGPNALV 133 >gi|90426118|ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisB18] gi|90108132|gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 158 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + +L QE G+V + AI ++A L+++ V + TFY F+ P G R +++ Sbjct: 24 EGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYHDFRKVPAG-RHVLKL 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L + DG +S E V C G C AP M+ Sbjct: 83 CLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLEPVYCLGLCATAPSAMLDGRLIG 142 Query: 159 DLTPERLEEII 169 L RL+ ++ Sbjct: 143 RLDATRLDALL 153 >gi|171316164|ref|ZP_02905388.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MEX-5] gi|171098673|gb|EDT43468.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MEX-5] Length = 166 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R +Q+C Sbjct: 21 SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIQMCR 79 Query: 101 TTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C GCE L CR + H + ++ G ++ E V C G C +P + + Sbjct: 80 AEACRSMGCETLAAHAEARTGCRFDAAHGEGADAHAPGDVALESVYCLGLCAQSPSMTVN 139 Query: 154 KDTYEDLTPERL 165 + +TPE+ Sbjct: 140 GVLHAKVTPEKF 151 >gi|121609342|ref|YP_997149.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter eiseniae EF01-2] gi|121553982|gb|ABM58131.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter eiseniae EF01-2] Length = 156 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++P+L Q+ G + A+ ++A L+++ V + TFY F+ P G + VQ+C Sbjct: 22 GGLLPMLHDIQDALGHIPAPALGLIAQELNLSRAEVHGVVTFYHFFRHEPAGKQV-VQIC 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G +KL E ++++ + +DG ++ E V C G C ++P +++ + + Sbjct: 81 RAEACQSMGADKLWEHACSRLNTQG-GTTADGAVTLEPVYCLGLCSSSPAMVVDEQLHAR 139 Query: 160 LTPERLEEIIDA 171 + + + ++ A Sbjct: 140 VDTVKFDRLVAA 151 >gi|254469432|ref|ZP_05082837.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp. JE062] gi|211961267|gb|EEA96462.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp. JE062] Length = 158 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q + G+V A+ +A+ L+++ V +FY F+ P G R ++VC Sbjct: 28 LLPILHDVQAKFGYVPEDALLQIADRLNLSRAEVHGTMSFYHDFRTEPAG-RHVLKVCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C G EKL E + + K DG ++ E V C G C AP M+ + + Sbjct: 87 EACQSLGGEKLAEDIQRDLGIKWHETTPDGKVTLEPVYCLGLCSCAPAAMMDGNLH 142 >gi|146305427|ref|YP_001185892.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina ymp] gi|145573628|gb|ABP83160.1| formate dehydrogenase gamma subunit [Pseudomonas mendocina ymp] Length = 164 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 15/140 (10%) Query: 32 RYPPSRCQS--------------AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 R+ P +C++ A++P+L Q++ G V + ++A L ++ V Sbjct: 7 RFAPEQCEAVTREVLAAHRGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVHG 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY F+ +P G R +++C C G + L +K+ DG+LS+E Sbjct: 67 VVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFEP 125 Query: 138 VECQGACVNAPMVMIGKDTY 157 V C G C AP VM+ + + Sbjct: 126 VYCLGNCACAPSVMLNGELH 145 >gi|220920303|ref|YP_002495604.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219944909|gb|ACL55301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 157 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + + A +P+L QE G+V AI ++A+ L+++ V TFY F+ P G R Sbjct: 20 THLEGATLPILHALQETFGYVDNEAIPLIADALNLSKAEVHGCITFYHDFRAKPAG-RHV 78 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V++C C G + L ++ DG ++ E V C G C P +I + Sbjct: 79 VKLCRAEACQAVGADALHAEVLRRLEVDWHGTTRDGAVTVEPVFCLGLCACGPAALIDGE 138 Query: 156 TYEDLTPERLEEII 169 L + L+ + Sbjct: 139 PVARLDADGLQAAL 152 >gi|206561320|ref|YP_002232085.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia cenocepacia J2315] gi|198037362|emb|CAR53295.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia J2315] Length = 166 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVGRH--ARAGRSLVAILHAIQNDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L CR + H ++ ++ E V Sbjct: 67 TAPPA-RVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPHAPDDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQ 176 C G C +P + + + +TPE+ + ++ DA + Q Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAVAHTQ 163 >gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] Length = 574 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 22/181 (12%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E++ P R + +I L Q++ G +S A + +A L +A V E+ATFY F Sbjct: 47 VQELLGAAP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEELRIAQAEVYEVATFYAHF 104 Query: 86 QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVEC 140 + G ++VC + C L G ++L +K L D + C Sbjct: 105 DVVKEGETPPPALTIRVCDSLSCELAGAQQL---------KKALEDGLDPAKVRVLRAPC 155 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APAGGLTS 199 G C AP++ IG + + TPE++E I A DT PQ + + A AGG Sbjct: 156 MGRCDTAPVLEIGHNHIDHATPEKVEAAIAA-----DDTHAHVPQYETYDAYAKAGGYQV 210 Query: 200 L 200 L Sbjct: 211 L 211 >gi|77463675|ref|YP_353179.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1] gi|126462507|ref|YP_001043621.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029] gi|221639518|ref|YP_002525780.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131] gi|77388093|gb|ABA79278.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|126104171|gb|ABN76849.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17029] gi|221160299|gb|ACM01279.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides KD131] Length = 157 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L Q + GWVS + A L + + +A+FY+ PVG R + + Sbjct: 22 RAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEMEALASFYSLIFRHPVG-RTVILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C C L G E++ E + ++ +DG + V C G C AP ++G+D Sbjct: 81 CDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTLLNVACLGGCDRAPAAVVGRD 137 >gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 608 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 1/127 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L AQE G++ AA+ ++A + + RV +A FY+ L+PVG + Sbjct: 24 LVQILREAQEALGYLPAAALTLIARAVGVPRARVEGVAGFYSFLHLAPVGRYRVLFSDNI 83 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T ML + L +C NK+ + + DG +S + C G C P +++ ++ Sbjct: 84 TDRMLGSGDLLDRLC-NKLWIERGKLSEDGLVSVDTTSCTGMCDQGPALLVNGRAMTRMS 142 Query: 162 PERLEEI 168 ER++ + Sbjct: 143 AERIDRL 149 >gi|53720138|ref|YP_109124.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia pseudomallei K96243] gi|254295607|ref|ZP_04963065.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 406e] gi|52210552|emb|CAH36535.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei K96243] gi|157805546|gb|EDO82716.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 406e] Length = 171 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV--QV 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV ++ Sbjct: 35 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP---AHVTIRL 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 92 CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 150 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 151 KMSPARFDALFDA 163 >gi|295677292|ref|YP_003605816.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1002] gi|295437135|gb|ADG16305.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1002] Length = 161 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 6/149 (4%) Query: 27 NEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++ R+ P R ++ +L Q++ G+V AA+ +A +L+++ V + T+Y F Sbjct: 10 DQLVQRHAQPGR---TLMTVLHAIQDEIGFVPPAAVGPLARVLNLSRAEVHGVITYYHHF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGAC 144 + +P VQ+C C G E L + + + DG T+ E V C G C Sbjct: 67 RTTPAAPVT-VQLCRAEACRSMGTEALAQHIEAHTGCRFDAGHHDGATVELESVYCLGQC 125 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +P +M+ + +TP++ + ++ A S Sbjct: 126 ALSPAMMLNGTLHARVTPQKFDALLAAAS 154 >gi|167586516|ref|ZP_02378904.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ubonensis Bu] Length = 158 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L Q++ G+V + +A L+++ V + T+Y F+ P R +Q+C Sbjct: 22 LVAVLHAIQDEAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTEP-PARVTIQMCRA 80 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C GCE L + + + G ++ E V C G C +P + + + +T Sbjct: 81 EACRSMGCEALAAHAQART-GCTFDASHAGAVALESVYCLGLCAQSPSMTVNGVLHARVT 139 Query: 162 PERLEEII-DAFSTGQ 176 PE+ + ++ DA + Q Sbjct: 140 PEKFDALLADAVAHAQ 155 >gi|91784826|ref|YP_560032.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia xenovorans LB400] gi|91688780|gb|ABE31980.1| formate dehydrogenase gamma subunit [Burkholderia xenovorans LB400] Length = 161 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 16/158 (10%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 AI ++++ R+ ++ +++ +L Q++ G+V AA+ +A L+++ V + T+Y Sbjct: 6 AIAPDQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CR-NKIHQKPLHRNSDGTLSW 135 F+ P + VQ+C C G E L IE CR + HQ T+ Sbjct: 64 HHFRTQP-AAQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHQH------GATVEL 116 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P +M+ + +TP++ + I A S Sbjct: 117 ESVYCLGQCALSPALMLNGTLHARITPQKFDAIFAAAS 154 >gi|319795812|ref|YP_004157452.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Variovorax paradoxus EPS] gi|315598275|gb|ADU39341.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus EPS] Length = 166 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ G++ + +A ++++ V + T+Y F+ +P R +Q+C Sbjct: 32 ALLPILHDVQDALGYIPPHTVTTIAEGVNLSRAEVHGVITYYHHFRSAPAA-RHVIQICR 90 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G + L+ ++ + DG + E C G C ++P + I ++ + + Sbjct: 91 AEACQSMGADALLAHAELRLGCSAHGHSKDGNFTLEPAFCLGLCASSPAMTINEEPHARM 150 Query: 161 TPERLEEIIDAFST 174 T + ++ + + Sbjct: 151 TTRSFDALVAQYGS 164 >gi|126454394|ref|YP_001067206.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1106a] gi|167720686|ref|ZP_02403922.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei DM98] gi|167846782|ref|ZP_02472290.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei B7210] gi|237813330|ref|YP_002897781.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei MSHR346] gi|242316557|ref|ZP_04815573.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106b] gi|254195622|ref|ZP_04902049.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei S13] gi|126228036|gb|ABN91576.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106a] gi|169652368|gb|EDS85061.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei S13] gi|237504647|gb|ACQ96965.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei MSHR346] gi|242139796|gb|EES26198.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106b] Length = 157 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV + Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 78 CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 137 KMSPARFDALFDA 149 >gi|260576445|ref|ZP_05844435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp. SW2] gi|259021328|gb|EEW24634.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp. SW2] Length = 157 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q G V + A+ ++A L+++ V + +FY F+ +P G R +++C Sbjct: 26 LLPILHALQAAFGHVPQEALPLIAKNLNLSRAEVHGVMSFYHDFRAAPAG-RHVLKLCRA 84 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G EKL R + + DG ++ E V C G C AP ++ + Sbjct: 85 EACQAMGAEKLAAHARTSLGIEWHETTRDGAVTLEPVFCLGLCACAPAALMDGKVVGRVD 144 Query: 162 PERLEEII 169 R + ++ Sbjct: 145 EARFDALV 152 >gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magnetotacticum MS-1] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 3/158 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P+ S ++ V V++R+ + ++ +L QE+ W+S + VA + Sbjct: 2 PNGNSNGSDTGAVVAAVLARHGSDGTR--LMQILREIQEETEWLSPDILTRVAEGAKLPR 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +A FY F P+G+ + T M + + +C+ K+ KP + DG Sbjct: 60 GQVEGVAGFYHFFHTEPLGSYRVLWSDNITDRMAGNADLMARMCK-KLWLKPGKVSEDGL 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 +S + C G C P +++ +T ER+++I+D Sbjct: 119 VSVDTTSCTGLCDQGPALLVNYRPVTRMTAERVDQIVD 156 >gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein [Rhodoferax ferrireducens T118] gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Rhodoferax ferrireducens T118] Length = 603 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S +A + +++RYPP A++ +L Q +GW++ A+ VA+ L + +V + Sbjct: 8 SLAAAPELQRLLARYPPD--PHALLQILRELQALQGWLAPDALGQVASELGLTLAQVQGV 65 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 A FY PVG V L G E L+ ++ P + DG +S E Sbjct: 66 AGFYRFLHTRPVGAY-RVLFSDNVTDRLLGSEALLADLCQRLGVVPGQLSFDGLVSVERT 124 Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIID 170 C G C P ++I L P R+ + + Sbjct: 125 SCTGLCDQGPALLINHHQVLTRLDPARVAHMAE 157 >gi|170732344|ref|YP_001764291.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia MC0-3] gi|254246010|ref|ZP_04939331.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia PC184] gi|124870786|gb|EAY62502.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia PC184] gi|169815586|gb|ACA90169.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia MC0-3] Length = 166 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H + ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155 >gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 567 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F++E+ + ++ P R + +I L Q++ G +S I +A + + Sbjct: 27 PKGRQFTDEAQAEILRLLGDRP--RRRDLLIEFLHLIQDEHGHISADHIAALATEMRIGQ 84 Query: 73 IRVLEIATFYTQFQL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + E ATFY F + P T ++VC + C + G ++L QK L Sbjct: 85 AEIYETATFYAHFDVVKEDETPPPALT---IRVCDSLSCEMAGAQQL---------QKAL 132 Query: 126 HRNSD-GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 D + C G C AP++ IG + + TPE+++ I A DT P Sbjct: 133 EDGLDPAAVRVVRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHLP 187 Query: 185 QIDRISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218 + ++ A GG T L + +K +DD +S Sbjct: 188 DYETYAAFTANGGYTKLKELRDGGDWEKVQDDILS 222 >gi|218260382|ref|ZP_03475731.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii DSM 18315] gi|218224553|gb|EEC97203.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii DSM 18315] Length = 92 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 ++P G + + VC T C +RG EK+++ + ++ K DG S + + C GAC Sbjct: 2 MTPKG-KYPISVCLGTACYVRGAEKVLDEFQRQLEIKVGETTPDGLFSLDCLRCVGACGL 60 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V I Y LTPE++ +I+ + Sbjct: 61 APVVTIAGKVYGRLTPEKVRDILSEY 86 >gi|160878250|ref|YP_001557218.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] gi|160426916|gb|ABX40479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] Length = 161 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S VI ++ Q+ ++ + +A L ++ ++ +ATFY F L P G +++ Sbjct: 21 KSHVIAIMQEVQKVYRYLPEEVLCYIAEKLKLSEAKIYGVATFYENFSLEPKGKYV-IKI 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C T C +R ++E R + + P D + E V C GAC AP+ + Sbjct: 80 CDGTACHVRKSIPILEEFRKVLGVTEKNP--TTDDMIFTVETVSCLGACGLAPVCTVNDV 137 Query: 156 TYEDLTPERLEEIID 170 + +TPE+ + +I+ Sbjct: 138 VHAAMTPEKAKALIE 152 >gi|146277731|ref|YP_001167890.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025] gi|145555972|gb|ABP70585.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L Q + GWVS + A+ L + + +A+FY+ PVG + + + Sbjct: 22 RAAMLEALKLIQHEHGWVSDGHLAEAASALGVHRAEMEALASFYSLIFRHPVG-KTVILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C C L G E++ E + ++ DG + V C G C AP ++G+D Sbjct: 81 CDGASCWLNGAEEVREELKRRLGIGFGETTRDGRYTLLNVACLGGCDRAPAAVVGRD 137 >gi|167903756|ref|ZP_02490961.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei NCTC 13177] Length = 146 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV--QV 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV ++ Sbjct: 10 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP---AHVTIRL 66 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 67 CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 125 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 126 KMSPARFDALFDA 138 >gi|254181074|ref|ZP_04887672.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1655] gi|184211613|gb|EDU08656.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1655] Length = 157 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV + Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 78 CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 137 KMSPARFDALFDA 149 >gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 565 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 2/147 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++S+Y R ++++P+L + G + A++ +A ++D+ V +ATFY + Sbjct: 16 LVSKYGNDR--ASILPVLEDISREYGEIDLYAMQTLAFLVDIHPSEVFGVATFYNFLKSG 73 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 + +++C T C ++ +++ + N++ + SDG S E C G C P Sbjct: 74 KKHGKYVIRLCRTISCHMKEKDRIAKQLNNELEIEFGEITSDGLFSLEYCNCLGMCDQGP 133 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175 ++I + P + II + G Sbjct: 134 AMLINDILISKVKPSDIPLIIQSCRRG 160 >gi|222150020|ref|YP_002550977.1| formate dehydrogenase subunit gamma [Agrobacterium vitis S4] gi|221737002|gb|ACM37965.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4] Length = 159 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q G V +A V+A L+++ V + +FY F+ P G R +++ Sbjct: 25 EGPLLPILHEIQRTFGCVPDSAKPVIARALNLSRAEVHGVVSFYHDFRDHPSG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L E + ++ +DG ++ E V C G C AP M+ + + Sbjct: 84 CRAEACQSLGGEPLGETIKARLGIDWHETTADGAVTLEPVFCLGLCACAPAAMLDGELHG 143 Query: 159 DLTPERLEEII 169 L L++++ Sbjct: 144 RLDEHCLDDLL 154 >gi|53724802|ref|YP_102257.1| formate dehydrogenase subunit gamma [Burkholderia mallei ATCC 23344] gi|67642931|ref|ZP_00441682.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei GB8 horse 4] gi|76809699|ref|YP_334388.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 1710b] gi|121599593|ref|YP_993893.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1] gi|124386153|ref|YP_001026954.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC 10229] gi|126441142|ref|YP_001059918.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 668] gi|126449103|ref|YP_001079758.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC 10247] gi|134277771|ref|ZP_01764486.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 305] gi|166999709|ref|ZP_02265543.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei PRL-20] gi|167739671|ref|ZP_02412445.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 14] gi|167830054|ref|ZP_02461525.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 9] gi|167912019|ref|ZP_02499110.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 112] gi|217420553|ref|ZP_03452058.1| formate dehydrogenase family protein [Burkholderia pseudomallei 576] gi|226197898|ref|ZP_03793472.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei Pakistan 9] gi|254177027|ref|ZP_04883684.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 10399] gi|254192273|ref|ZP_04898762.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei Pasteur 52237] gi|254203942|ref|ZP_04910302.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH] gi|254208922|ref|ZP_04915270.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU] gi|254262013|ref|ZP_04953067.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1710a] gi|254360023|ref|ZP_04976293.1| formate dehydrogenase, gamma subunit [Burkholderia mallei 2002721280] gi|52428225|gb|AAU48818.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 23344] gi|76579152|gb|ABA48627.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 1710b] gi|121228403|gb|ABM50921.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1] gi|124294173|gb|ABN03442.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei NCTC 10229] gi|126220635|gb|ABN84141.1| formate dehydrogenase family protein [Burkholderia pseudomallei 668] gi|126241973|gb|ABO05066.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei NCTC 10247] gi|134251421|gb|EBA51500.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 305] gi|147745454|gb|EDK52534.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH] gi|147750798|gb|EDK57867.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU] gi|148029263|gb|EDK87168.1| formate dehydrogenase, gamma subunit [Burkholderia mallei 2002721280] gi|157987468|gb|EDO95244.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei Pasteur 52237] gi|160698068|gb|EDP88038.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 10399] gi|217395965|gb|EEC35982.1| formate dehydrogenase family protein [Burkholderia pseudomallei 576] gi|225930086|gb|EEH26099.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei Pakistan 9] gi|238524151|gb|EEP87586.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei GB8 horse 4] gi|243064207|gb|EES46393.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei PRL-20] gi|254220702|gb|EET10086.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1710a] Length = 157 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV + Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 78 CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 137 KMSPARFDALFDA 149 >gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 603 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 W+++++ R+ R + ++ +L QE G + + A+ V+A L + R+ +A+FY+ Sbjct: 16 WLDKLVMRH--GRDATRLLQILREIQESFGHIPQQAVSVLAAKLSIPRSRIESVASFYSF 73 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 L P G + T ML G + L++ + +P + DG +S C G C Sbjct: 74 LHLKPHGEYRVLFSDNITDRML-GSQDLMDQMCQLLWLQPGKVSEDGLVSIGTTSCTGMC 132 Query: 145 VNAPMVMIGKDTYEDLTPERLEEI 168 P +++ +T +R++EI Sbjct: 133 DQGPALLVNGRAITRMTHQRVQEI 156 >gi|167895369|ref|ZP_02482771.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 7894] gi|167919994|ref|ZP_02507085.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei BCC215] Length = 157 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV + Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L+ + + + + D ++ E V C G C +P + I + + Sbjct: 78 CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 137 KMSPARFDALFDA 149 >gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] Length = 565 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 14/166 (8%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P ++++ + EV+ P R + +I L Q++ G +S A + +A + ++ Sbjct: 25 PKGRQVTDQAWAELREVLGDRP--RRRDLLIEFLHLIQDRYGHLSAAHLRALAEEMRLSQ 82 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F + G ++VC + C L G + L + + Sbjct: 83 AEVYEVASFYAHFDVVKEGESPPPALTIRVCDSLSCELAGAQALKSALEDGL-------- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G + C G C AP++ +G + + TPE++++ I A T Sbjct: 135 DPGQVRVLRAPCMGRCATAPVLELGHNHIDHATPEKVQQAIAANHT 180 >gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 626 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 7/170 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L Q++ ++ A ++ +A + I V +A+FY+ L P G R +++C Sbjct: 40 MLDILREVQDRFQCIAPATMDQIAEETGLTRIEVEGVASFYSFLSLQPKG-RITIRLCDD 98 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 G E + + + K ++DG +S E C G C AP M+ +LT Sbjct: 99 IVDRYAGLEAVTAAFEDALGIKIGETSADGAVSLEYTPCIGMCDQAPAAMVNDIVLTNLT 158 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQI-DRISS-APAGGLTSLLDNNSKKRG 209 + E+ +A G+ RP + DR ++ +P ++DNN + G Sbjct: 159 AQSAREVAEAIIAGK----RPEDLVSDRFATLSPHDRAVRMVDNNIRHAG 204 >gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] Length = 609 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ +++RY R ++ +L+ QE EG++S +++ V+A+ L+++ + V E +FY Sbjct: 5 VDAIMARYLHRR--ERLLDMLIALQETEGYISDSSVNVLASGLNLSPLDVRETISFYHFL 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + + T ++G E++ I +G + +C G Sbjct: 63 HDQPAGKHT-IYLADTVIARMKGYEEVKAALEEAIGCAFGEVTENGEFGLYDTQCIGLSD 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P +++ + LTP++++ ++ A G Sbjct: 122 QEPAMLVDGIPFTHLTPDKVQTLVVALKAG 151 >gi|332529345|ref|ZP_08405306.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella gracilis ATCC 19624] gi|332041143|gb|EGI77508.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella gracilis ATCC 19624] Length = 160 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+Q G++ + +A L+++ V + T+Y F+ P A VQVC Sbjct: 34 ALLPILHDIQDQLGYIPADVVVDIAEALNVSRAEVHGVITYYHHFRSEP-ARGAVVQVCR 92 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L E K + ++ E V C G C AP V I + + Sbjct: 93 AEACQSCGSEALWEHASKKA--------AGQNVTLEPVYCLGLCATAPAVQIQDKFHARV 144 Query: 161 TPERLEEII 169 TP + + ++ Sbjct: 145 TPTKFDRLL 153 >gi|325523855|gb|EGD02082.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia sp. TJI49] Length = 162 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V + +A L+++ V + T+Y F+ P R +Q+C Sbjct: 21 SLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTVP-PARVTIQMCR 79 Query: 101 TTPCMLRGCEKLIEV--CRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTY 157 C GCE L E R H SD ++ E V C G C +P + + + Sbjct: 80 AEACRSMGCEALAEHAEARTGCRFDAAHDASDPQAVALESVYCLGLCAQSPSMTVNGVLH 139 Query: 158 EDLTPERLEEII 169 +TP++ + ++ Sbjct: 140 AKVTPQKFDALL 151 >gi|163760123|ref|ZP_02167206.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43] gi|162282522|gb|EDQ32810.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43] Length = 159 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 1/127 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L QE G V ++A+ V+A L+++ V + +FY ++ +P G R +++C Sbjct: 28 LLTILHDVQEAFGHVPQSALPVIAEGLNLSRAEVHGVVSFYHDYREAPAG-RHVIKLCRA 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G ++L E + ++DG ++ E V C G C AP M+ + L Sbjct: 87 EACQSMGGDELAERLMGLLGLDWHETSADGAVTLEPVYCLGLCACAPAAMVDGEVLGRLD 146 Query: 162 PERLEEI 168 + + E+ Sbjct: 147 ADAVSEL 153 >gi|332558531|ref|ZP_08412853.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] gi|332276243|gb|EGJ21558.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] Length = 157 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L Q + GWVS + A L + + +A+FY+ PVG + + + Sbjct: 22 RAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEMEALASFYSLIFRHPVG-KTVILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 C C L G E++ E + ++ +DG + V C G C AP ++G+D Sbjct: 81 CDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTLLNVACLGGCDRAPAAVVGRD 137 >gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 561 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 26/173 (15%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R +I L Q+ G +S A + +A L ++ V E+ATFY F + G Sbjct: 43 RRSDLLIEFLHLIQDAYGHLSAAHLRALAEELRLSMAEVYEVATFYAHFDVVKEGETPPP 102 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----CQGACVNA 147 ++VC + C L G + L +G+L EV C G C A Sbjct: 103 ALTIRVCDSLSCELAGAQALKSAL-------------EGSLDASEVRVLRAPCMGRCDTA 149 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 P++ +G + TPE++E I A T D P + D + AGG TSL Sbjct: 150 PVLELGHHHIDHATPEKVEAAIAANHT-HADI--PAYE-DFAAYEAAGGYTSL 198 >gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] Length = 568 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 22/189 (11%) Query: 21 ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 E W V ++ P R + +I L R Q+Q G +S A + +A + ++ V E+ Sbjct: 30 EDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDQFGHLSAAHLRALAEEMRLSQAEVYEV 87 Query: 79 ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 A+FY F + G ++VC + C L G + L + + G + Sbjct: 88 ASFYAHFDVIREGETPPPALTIRVCDSLSCELAGAQALKSALEDGV--------DPGQVR 139 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-P 193 C G C AP+V +G + TPE + + A GDT P+ + + Sbjct: 140 ILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPEYEGFEAYRA 194 Query: 194 AGGLTSLLD 202 AGG +L D Sbjct: 195 AGGYATLAD 203 >gi|316932166|ref|YP_004107148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] gi|315599880|gb|ADU42415.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] Length = 156 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 A + +L QE G+V + A ++A L+++ V + TFY F+ P G R +++C Sbjct: 23 GATLLMLQALQEAFGYVPQDAEPMIAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKLC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C G + L+ ++ +DG ++ E C G C AP MI + Sbjct: 82 RAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMINERVVGR 141 Query: 160 LTPERLEEII 169 L +L+ ++ Sbjct: 142 LDAGKLDALL 151 >gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] Length = 566 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P R + +I L Q+ G +S A I +A L Sbjct: 26 PKGRQLDDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDAYGHLSAAHIRALAEELRTGQ 83 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G A ++VC + C L G E+L QK L Sbjct: 84 AEIYEVASFYAHFDVVREGETAPPALTIRVCDSLSCELAGAEQL---------QKALEDG 134 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 D + + C G C AP++ IG + + T E++E I A T Sbjct: 135 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAADDT 181 >gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB] gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Dechloromonas aromatica RCB] Length = 632 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E A V+ V++RY R + ++ +L QE W+S AI+ + L + ++ + Sbjct: 8 AEAVAGVVDRVVARY--HRDPTCMVQILREVQEVCDWISPEAIDRMQVTLGVPRTKIEGV 65 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 A FY F P G + T ML G + +++ N + + + DG +S + Sbjct: 66 AGFYAFFYTEPRGKYRVLFSDNITDRML-GSKAMMDRLCNSLWVERGKVSEDGLVSVAQT 124 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 C G C P ++I LT ER++EI Sbjct: 125 ACTGMCDQGPALLINNYAIAGLTAERIDEI 154 >gi|298492585|ref|YP_003722762.1| NADH dehydrogenase 24 kDa subunit ['Nostoc azollae' 0708] gi|298234503|gb|ADI65639.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit ['Nostoc azollae' 0708] Length = 150 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 1/129 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q VI +L RA E G++ + +A+ L + V +ATFY F L+P G + + V Sbjct: 12 QDTVIEILHRASELFGYLELDLLLYIAHKLKLPPSWVYGVATFYHLFFLAPKG-KHNCVV 70 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + ++ N + S G + C GAC A V+ Sbjct: 71 CTGTACYVKGSQAILSSLENVTKIRAGETTSYGEIYLMTARCLGACGIASAVVFDGAVLG 130 Query: 159 DLTPERLEE 167 + TPE + E Sbjct: 131 NQTPESVCE 139 >gi|296159982|ref|ZP_06842802.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. Ch1-1] gi|295889728|gb|EFG69526.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. Ch1-1] Length = 161 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 AI ++++ R+ ++ +++ +L Q++ G+V AA+ +A L+++ V + T+Y Sbjct: 6 AIAPDQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSDGTLSWE 136 F+ P + VQ+C C G E L IE CR + T+ E Sbjct: 64 HHFRTQP-AAQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHE-----HGATVELE 117 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C G C +P +M+ + +TP++ + I A S Sbjct: 118 SVYCLGQCALSPALMLNGTLHARVTPQKFDAIFAAAS 154 >gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] Length = 576 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++I P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E L QK L Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEAL---------QKALEDG 144 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 D + + C G C AP++ IG + + TPE+++ I A T Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAADDT 191 >gi|146278887|ref|YP_001169046.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC 17025] gi|145557128|gb|ABP71741.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+E++ + + ++P+L QE G V ++ +A L+++ V + +FY F Sbjct: 12 VDEILDEH--EGLEGPLLPILHAVQEAFGHVPLESLPRIAERLNLSRAEVHGVMSFYHDF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G R +++C C G ++L E + ++ +DG ++ E V C G C Sbjct: 70 RTRPHG-RHVLKLCRAEACQAMGADRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCA 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 AP ++ + RL+ I++ Sbjct: 129 CAPAALVDGRVVGRVDDARLDRILE 153 >gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] Length = 576 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++I P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E L QK L Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEAL---------QKALEDG 144 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 D + + C G C AP++ IG + + TPE+++ I A T Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAADDT 191 >gi|169351258|ref|ZP_02868196.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552] gi|169292320|gb|EDS74453.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552] Length = 163 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+++++ + + +L Q+ G++ A+E ++ +++ +V + TFY+QF Sbjct: 12 IDEIVAKHKDEK--GPMKLMLHEIQDSLGYIPFEAMEKISKAINVPVSKVYGVVTFYSQF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + VC T C + G + ++++ + + DG S + C GAC Sbjct: 70 TTEPKGKHV-ISVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACG 128 Query: 146 NAPMVMI 152 AP+V + Sbjct: 129 LAPVVSV 135 >gi|90425543|ref|YP_533913.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18] gi|90107557|gb|ABD89594.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 157 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A++ L Q EG+VS A + A++L ++ + +ATFY+ SPVG + + Sbjct: 22 KAAMLEALKLVQAVEGYVSDAHLAEAASVLGVSTAEIDSLATFYSHIFRSPVGETV-ILL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156 C C L G + + + ++ DG + V C G C AP ++G D Sbjct: 81 CDGLSCYLCGGDAVRDAVMQRLGIGFGETTPDGKFTLINVCCIGGCDVAPAALVGPDRRL 140 Query: 157 YEDLTPERLEEII 169 L+ + L ++I Sbjct: 141 VGPLSADDLNQLI 153 >gi|323139482|ref|ZP_08074530.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395284|gb|EFX97837.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp. ATCC 49242] Length = 157 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +P+L + G V AA+ +A L++ + + TFY F P G R +++ Sbjct: 23 EGPALPILHALMAEFGHVPEAAVREMAEALNITRAEMHGVVTFYHDFHREPHG-RHTLKI 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G EK + K+ + DG+L+ E V C G C ++P + + Sbjct: 82 CRAESCQSMGAEKQAKDFLAKLKLEWGQTTPDGSLTVEPVYCLGLCAHSPSALFDGEPIG 141 Query: 159 DLTPERLEEII 169 + +L+EI+ Sbjct: 142 CVDAAKLDEIV 152 >gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s] Ferredoxin Involved In The Nadp-Reducing Hydrogenase Complex Length = 85 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 42/74 (56%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Sbjct: 9 ISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEK 68 Query: 156 TYEDLTPERLEEII 169 Y ++TP ++++I+ Sbjct: 69 VYGNVTPGQVKKIL 82 >gi|327243023|gb|AEA41130.1| putative bifurcating [FeFe] hydrogenase subunit 1 [Clostridium butyricum] Length = 122 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I ++ Q++ ++ + +A L ++ ++ +ATFY F L P G + +++C Sbjct: 1 LIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENFSLKPKG-KYVIKICNG 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +R ++E RN + +D + + E V C GAC AP+ + + Y ++ Sbjct: 60 TACHVRKSIPILEEFRNILGLCEEKSTTDDMMFTVETVSCLGACGLAPVCTVNDEVYPNM 119 Query: 161 T 161 T Sbjct: 120 T 120 >gi|27378249|ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA 110] gi|27351396|dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+ + +R + A + +L Q G+V AAI +VA L+++ V + TFY F+ Sbjct: 19 EIIAEH--ARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRH 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R +++C C G + L ++ + +D ++ E + C G C A Sbjct: 77 KPAG-RHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYCLGLCATA 135 Query: 148 PMVMIGKDTYEDLTPERLEEII 169 P M+ L +RL+ ++ Sbjct: 136 PSAMLDGRLVGRLDEKRLDALV 157 >gi|119385583|ref|YP_916638.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Paracoccus denitrificans PD1222] gi|119376178|gb|ABL70942.1| formate dehydrogenase gamma subunit [Paracoccus denitrificans PD1222] Length = 159 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+I+ + + ++P+L Q + G+V A V+A L M V + +FY F Sbjct: 14 LDEIIAAHKGR--EGPLLPILHDLQAEWGYVPEEAQPVLAEALGMTRAEVHGVVSFYHDF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G R +++C C G E L + R + DG L+ E V C G C Sbjct: 72 RDHPHG-RHVLRLCRAEACQSMGAEALADEVRAALGIDWHETTPDGRLTLEPVFCLGLCA 130 Query: 146 NAPMVMIGK 154 AP +G+ Sbjct: 131 CAPSAQMGE 139 >gi|172059964|ref|YP_001807616.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MC40-6] gi|171992481|gb|ACB63400.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MC40-6] Length = 166 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H ++ G ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCESLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155 >gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] Length = 568 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L + Q+ G +S A + +A + M+ + E+ATFY F + G ++ Sbjct: 55 LIEHLHKIQDTHGCLSAAHLRALAEEMRMSMAEIYEVATFYAHFDVVKEGETPPPALTIR 114 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C L G ++L N ++ G + C G C AP++ +G Sbjct: 115 VCDSLSCELAGAQELKAALENGLNP--------GEVRVLRAPCMGRCDTAPVLELGHAHI 166 Query: 158 EDLTPERLEEIIDAFST 174 + TPE++ I A T Sbjct: 167 DHATPEKVTAAIAAGDT 183 >gi|162148251|ref|YP_001602712.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|209542891|ref|YP_002275120.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161786828|emb|CAP56411.1| putative NADH-quinone oxidoreductase chain E [Gluconacetobacter diazotrophicus PAl 5] gi|209530568|gb|ACI50505.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 164 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L Q + GWV A + ++++ ++ + +ATF+ PVG R + +C + C Sbjct: 34 LAAVQARFGWVCDAHLAELSDLTGLSVADLDGVATFFNLIFRRPVG-RHVIMMCDSVSCW 92 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 + G + L +++ +P DG ++ + C G C +AP +++ + + D+ + Sbjct: 93 IMGRDALCARLCDRLGIRPGQTTPDGAVTLLPIVCLGHCDHAPALLVDRTLHGDVDEAGI 152 Query: 166 EEIID 170 + I D Sbjct: 153 DRIAD 157 >gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 616 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 13/139 (9%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 V+ L ++ GW+S A+ + L +A V +ATFY F + R V VC Sbjct: 54 VMEALHAVNDRVGWISPGALNYIGKRLGIAAADVYSVATFYAMFSTNMRPKRI-VHVCTD 112 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS-WEEVECQGACVNAPMVM---IGKDTY 157 CM RG + EVC + +K L G +S W+ C G C AP + G + Sbjct: 113 IACMARGSK---EVCADL--EKRL--GPAGAMSGWKHSPCLGVCERAPAALAVEAGDPPH 165 Query: 158 EDLT-PERLEEIIDAFSTG 175 E L P +E++ A + G Sbjct: 166 EHLIGPATADEVVLALNNG 184 >gi|115350951|ref|YP_772790.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria AMMD] gi|115280939|gb|ABI86456.1| formate dehydrogenase gamma subunit [Burkholderia ambifaria AMMD] Length = 166 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H ++ G ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155 >gi|77464659|ref|YP_354163.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides 2.4.1] gi|332559553|ref|ZP_08413875.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N] gi|77389077|gb|ABA80262.1| NAD-dependent formate dehydrogenase, gamma subunit (24 kDa) [Rhodobacter sphaeroides 2.4.1] gi|332277265|gb|EGJ22580.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N] Length = 157 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE G V ++ +A L+++ V + +FY F+ P G R +++ Sbjct: 23 EGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + ++ +DG ++ E V C G C P ++ Sbjct: 82 CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 141 Query: 159 DLTPERLEEIID 170 + RLE I++ Sbjct: 142 RVDEARLERILE 153 >gi|118579912|ref|YP_901162.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] gi|118502622|gb|ABK99104.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] Length = 169 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%) Query: 39 QSAVIPLLMRA-QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 Q A + L+++A Q++ ++ + V LD+ +V + +FY F L P G ++ Sbjct: 28 QPARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAHFTLEPRGKYV-IR 86 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDT 156 +C T C + ++E K+ + D + E V C GAC AP+++I ++ Sbjct: 87 LCDGTACHAKRSIPILEALYAKLGLSSKKVTTPDMLFTVETVTCLGACGLAPVMLINEEV 146 Query: 157 YEDLTPERLEEIID 170 Y +TP +ID Sbjct: 147 YGRVTPASAVALID 160 >gi|221640573|ref|YP_002526835.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides KD131] gi|221161354|gb|ACM02334.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides KD131] Length = 155 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE G V ++ +A L+++ V + +FY F+ P G R +++ Sbjct: 21 EGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + ++ +DG ++ E V C G C P ++ Sbjct: 80 CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 139 Query: 159 DLTPERLEEIID 170 + RLE I++ Sbjct: 140 RVDEARLERILE 151 >gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] Length = 562 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 20/172 (11%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT---- 92 R + +I L Q++ G +S A I +A + + E+A+FY F + G Sbjct: 44 RNRDLLIEFLHLIQDKYGHLSAAHIRALAEEMRTGQAEIYEVASFYAHFDVVKEGEAPPP 103 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACVNAPMVM 151 ++VC + C L G ++L QK L D + + C G C AP++ Sbjct: 104 ELTIRVCDSLSCELAGAQQL---------QKALEDGLDASQVRVLRAPCMGRCDTAPVLE 154 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLD 202 IG + + T E++E I A GDT P + + A GG +L D Sbjct: 155 IGHNHIDHATVEKVEAAIAA-----GDTHAHIPAYETFADYEAEGGYAALKD 201 >gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 319 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/194 (20%), Positives = 90/194 (46%), Gaps = 9/194 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + + ++ ++++YP ++P+++ +Q+G++S ++ +A + +V Sbjct: 74 TYNADESAGLDSILAKYPDH--PQYLLPIVIEETDQKGYISDPSLVKIAKHVHPYPPQVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134 I + Y F + HV +C CM++G K+++ + + LH + DG + Sbjct: 132 SILSHY-HFFPRKYTSDTHVYLCRCHNCMMKGQSKVMQALKERYGVDNLHSSVSRDGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + + G CVN P +M+ G D E LT + + + +G+ + Sbjct: 191 FHTMNWLGYCVNDGPAMMVKRRGGDYVEVLTGLTGDGVEQSLKGLKGNVFKWAKNKIVEQ 250 Query: 191 SAPAGGLTSLLDNN 204 + A G SL++NN Sbjct: 251 TLKAEGRYSLIENN 264 >gi|192289231|ref|YP_001989836.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris TIE-1] gi|192282980|gb|ACE99360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris TIE-1] Length = 156 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + +L Q+ G+V A ++A L+++ V + TFY F+ P G R +++ Sbjct: 22 EGATLLMLQALQQAFGYVPPDAEPMIAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L+ ++ +DG ++ E C G C AP MI + Sbjct: 81 CRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMINERVVG 140 Query: 159 DLTPERLEEII 169 L +L+ ++ Sbjct: 141 RLDAGKLDALL 151 >gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 561 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 27/211 (12%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RRL + + +P EE + ++ P R +I L + Q+ G VS I Sbjct: 14 RRLGKPKGRPVDAHVLEE----IQRLLGAEP--RRADLLIEHLHKIQDHYGHVSARHIAA 67 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNK 119 +A + ++ V E+ATFY F + G V+VC + C + G L+ ++ Sbjct: 68 LAFEMKLSQAEVYEVATFYHHFDVVAEGESPPPPLTVRVCESLSCAMAGAHALMPALKDA 127 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + + V C G C +AP+ ++G++ + TP + ++ QG T Sbjct: 128 LGE---------GVRIQPVPCVGRCQHAPVAVVGQNPVDRATPAAVSAAVE-----QGQT 173 Query: 180 IRPGPQIDRISSA--PAGGLTSLLDNNSKKR 208 + P P R +A GG D S R Sbjct: 174 L-PAPAAYRSYAAYQADGGYQLYQDCRSGHR 203 >gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.] Length = 561 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++ + P R + +I L Q+ G +S A + +A + ++ V E+ATFY F Sbjct: 34 VQDLLGQRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEEMRLSQAEVYEVATFYAHF 91 Query: 86 QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 + G V+VC + C L G +L E + + K ++ C Sbjct: 92 DVVKEGETPPPALTVRVCDSLSCELAGAAQLQEALQQGLDPK--------SVRVVRAPCM 143 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C AP++ +G + TPE++ I A T Sbjct: 144 GRCDTAPVLELGHHHIDHATPEKVLAAISAGHT 176 >gi|126463499|ref|YP_001044613.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC 17029] gi|126105163|gb|ABN77841.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17029] Length = 157 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE G V ++ +A L+++ V + +FY F+ P G R +++ Sbjct: 23 EGPLLPILNAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + ++ +DG ++ E V C G C P ++ Sbjct: 82 CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 141 Query: 159 DLTPERLEEIID 170 + RLE I++ Sbjct: 142 RVDEARLERILE 153 >gi|325971422|ref|YP_004247613.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] gi|324026660|gb|ADY13419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] Length = 164 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Query: 52 QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK 111 + ++S+ + +VA +++ V +ATFY F L P G + VC T C RG + Sbjct: 34 EHNYLSKEELILVAKAMEVPLSTVYSVATFYAFFNLKPQGEHV-ITVCRGTACHTRGSKP 92 Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVE-------CQGACVNAPMVMIGKDTYEDLTPER 164 L++ + Q L + +GT + ++V C G C AP++ I + +T ++ Sbjct: 93 LLQ---QVLKQLNLELDEEGTATTDDVRFTVHTVACFGQCALAPVIAIDSVIHSRVTEQK 149 Query: 165 LEEIIDAF 172 L +++ Sbjct: 150 LTQLLQTL 157 >gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] Length = 580 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q++ G++S A I +A + + E+A+FY F + G Sbjct: 62 RDRDLLIEFLHLVQDKFGYISAAHIRALAEEMRTGQAEIFEVASFYAHFDVVKEGENPPP 121 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L G E+L + + + + C G C AP++ I Sbjct: 122 ALTIRVCDSLSCELAGAEQLKKALEEGM--------NPAKVRVLRAPCMGRCDTAPVLEI 173 Query: 153 GKDTYEDLTPERLEEIIDAFST 174 G + ++ T E++E I A T Sbjct: 174 GHNHIDNATVEKVEAAIAADDT 195 >gi|224825581|ref|ZP_03698686.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella nitroferrum 2002] gi|224602502|gb|EEG08680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella nitroferrum 2002] Length = 159 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 1/129 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++P+L Q+ G++ A+ +A L + V + TFY F+ +P +Q+C Sbjct: 25 ALLPILHDVQDTLGFIPDWAVADIAKALSQSRAEVHGVITFYHHFRTTPPAQHT-LQICQ 83 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C RG +L + R++D ++ E V C G C + P + + + Sbjct: 84 AEACQARGSRELTAHAEQVLGCSLHGRSADQSIGLEPVYCLGLCSSGPNIQLNDKMVSRV 143 Query: 161 TPERLEEII 169 +L+ ++ Sbjct: 144 DAAKLDRLL 152 >gi|86747852|ref|YP_484348.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris HaA2] gi|86570880|gb|ABD05437.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 156 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 +L QE G V AA +VA L+++ V + TFY F+ +P G R +++C C Sbjct: 28 ILHALQEAFGHVPAAAEPMVAQALNLSRAEVHGVLTFYPDFRRTPPG-RHVLKLCRAEAC 86 Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164 G + L ++ +DG ++ E C G C AP M+ + L + Sbjct: 87 QAAGGDALAARAETRLGVTFGATTADGAVTLEPTYCLGLCATAPAAMLNERVIGRLDAGK 146 Query: 165 LEEII 169 L+ ++ Sbjct: 147 LDALL 151 >gi|237734767|ref|ZP_04565248.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|229382095|gb|EEO32186.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 160 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 3/127 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++E+++++ + + +L Q + G++ A+E ++ + + +V + TFY+QF Sbjct: 9 IDEIVAKHKDEK--GPMKLMLHEIQNELGYIPFEAMEKISETIGVPVSKVYGVVTFYSQF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + VC T C + G + ++++ + + DG S + C GAC Sbjct: 67 TTEPKGKHV-IAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACG 125 Query: 146 NAPMVMI 152 AP+V + Sbjct: 126 LAPVVSV 132 >gi|187924995|ref|YP_001896637.1| NAD-dependent formate dehydrogenase, subunit gamma [Burkholderia phytofirmans PsJN] gi|187716189|gb|ACD17413.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia phytofirmans PsJN] Length = 161 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 AI ++++ R+ ++ +++ +L Q++ G+V AA+ +A ++++ V + T+Y Sbjct: 6 AIAPDQLVERH--AQPGVSLLAVLHAIQDEVGYVPPAAVAPLARAMNLSRAEVHGVITYY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CR-NKIHQKPLHRNSDGTLSW 135 F+ P VQ+C C G E L IE CR + HQ T+ Sbjct: 64 HHFRTQPPAPVT-VQLCRAEACRSMGTEALAQHIEAHTGCRFDGEHQH------GATVEL 116 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P +M+ + +TP++ + I A S Sbjct: 117 ESVYCLGQCALSPALMLNGTLHARVTPQKFDAIFAAAS 154 >gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] Length = 561 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%) Query: 21 ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 E W V +++ P R + +I L Q++ +S A + +A + ++ V E+ Sbjct: 27 EDKAWAEVRDLLGDRP--RRRDLLIEFLHLIQDEYRCLSAAHLRALAEEMRLSMAEVYEV 84 Query: 79 ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 ATFY F + G ++VC + C L G E+L E N + + Sbjct: 85 ATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLREALENGM--------DPAQVR 136 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP++ +G + TPE++E I A T Sbjct: 137 VMRAPCMGRCDTAPVLELGHNHIGHATPEKVEAAIAAGET 176 >gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] Length = 581 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 13/95 (13%) Query: 75 VLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V E ATFY FQ+S RA ++VC CM++G E L+ R N+ Sbjct: 101 VYETATFYAHFQMSRSDDLAPPRATIRVCDGVVCMIQGAEALLRETRA---------NAP 151 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 + C G C AP M+G+ TPERL Sbjct: 152 ADVRVVPAPCMGWCDRAPAAMVGQRHISAATPERL 186 >gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] Length = 585 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 18/165 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L R Q++ G + + +A + +A V E+ATFY F P G +A V+ Sbjct: 57 LIEYLHRLQDEHGALHADHLAALAEAMKLARAEVFEVATFYHHFDFVPAGGKAPPALTVR 116 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C + G +L +++ + + + V C G C +AP+ ++G+ Sbjct: 117 VCESLGCAMAGGAELAASLASQLGAE---------VRVQRVPCVGRCDSAPVAVVGQRPV 167 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 +R+ ++ G+ P P+ R + A L D Sbjct: 168 LHADADRVAAVVAG-----GERDEPLPEAIRFDAYRAAAGYRLWD 207 >gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 567 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 14/166 (8%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +S+E+ V V+ P R + +I L Q+ G +S + +A + + Sbjct: 27 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDVYGHLSADHLAALAFEMKLGQ 84 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G ++VC + C L G E+L + Sbjct: 85 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCALAGAEQLRAALEEGL-------- 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G + C G C AP++ +G + + TPE++ I A T Sbjct: 137 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAAGDT 182 >gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] Length = 626 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 7/171 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L Q++ ++ A ++ +A + I V +A+FY+ L+P G R +++C Sbjct: 40 MLDILREVQDRYRCIAPATMDHIAAATGLTRIEVEGVASFYSFLSLTPKG-RVTIRLCDD 98 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 G ++ +++ K ++DG S E C G C AP M+ LT Sbjct: 99 IVDRFSGLSEVACAFEDELGLKVGETSNDGAFSLEYTPCIGMCDQAPAAMVNDIVLTKLT 158 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQI-DRISS-APAGGLTSLLDNNSKKRGK 210 PE A G+ P I DR + P+ ++DNN + G+ Sbjct: 159 PETARSAAQALKAGR----SPEQLISDRFEALTPSERALHMVDNNIRHAGE 205 >gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 572 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 18/170 (10%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92 SR + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G Sbjct: 46 SRQRDLLIEHLHLIQDTFGQISAEHLAALADEMALAFAEVFETATFYAHFDVVKEGDAAI 105 Query: 93 -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V+VC + C + G ++L+E + ++ + + C G C +AP V Sbjct: 106 PRLTVRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200 +G + + ++A GDT P +D + AGG +L Sbjct: 158 VGHNFLHKADLASVRAAVEA-----GDTHAHVPDYVDYDAYRAAGGYATL 202 >gi|148259852|ref|YP_001233979.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Acidiphilium cryptum JF-5] gi|326403220|ref|YP_004283301.1| putative formate dehydrogenase gamma subunit [Acidiphilium multivorum AIU301] gi|146401533|gb|ABQ30060.1| formate dehydrogenase gamma subunit [Acidiphilium cryptum JF-5] gi|325050081|dbj|BAJ80419.1| putative formate dehydrogenase gamma subunit [Acidiphilium multivorum AIU301] Length = 157 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE G++ R A ++A++L++ V + +FY F+ +P G R +++ Sbjct: 24 EGPLLPILHALQENFGFIPREAEPLIADMLNITRAEVHGVISFYHDFRRAPAG-RHVLKL 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C C G E + + + DG ++ E V C G C AP + Sbjct: 83 CRAEACQSMGSEANARRLLDALGLEWGGTTPDGRITVEAVYCLGLCATAPSALF 136 >gi|78065618|ref|YP_368387.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia sp. 383] gi|77966363|gb|ABB07743.1| formate dehydrogenase gamma subunit [Burkholderia sp. 383] Length = 166 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDDAGYVPPGCVAPLARALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L CR + H ++ G ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCEALAAHAEARTGCRFDAAHGDAADAHAPGDVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SLTVNGVLHARVTPEKFDALL 155 >gi|114566550|ref|YP_753704.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337485|gb|ABI68333.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 ++ AI A + ++ IATFY+ F + G V++C + PC + G ++ Sbjct: 31 YLPEEAIAEAARVFKLSTAEAYGIATFYSMFSVEARGKNV-VRICESAPCHVAGAADVVA 89 Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++ K +DG + E EC G C P++ + Y D++P ++ II + Sbjct: 90 ALERELGIKMGESTADGKFALEFTECVGQCQATPVITVNGKPYLDVSPAQIPAIIAEY 147 >gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 567 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F++E+ + ++ P R + +I L Q+ G +S I +A + + Sbjct: 27 PKGRQFTDEAQAEIQRLLGDRP--RRRDLLIEFLHLIQDTHGHISADHIAALAVEMRIGQ 84 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E ATFY F + G ++VC + C + G ++L +K L Sbjct: 85 AEIYETATFYAHFDVVKEGETPPPALTIRVCDSLSCEMAGAQQL---------KKALEDG 135 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 D + + C G C AP++ IG + + TPE+++ I A GDT P + Sbjct: 136 LDPSEVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----GDTHAHLPDYE 190 Query: 188 RISS-APAGGLTSL 200 ++ GG T L Sbjct: 191 TFATYVENGGYTKL 204 >gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein [Leptothrix cholodnii SP-6] gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Leptothrix cholodnii SP-6] Length = 627 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R A++ +L Q + W+ R + ++A+ L + V +A+FY F + PVG Sbjct: 43 GRNPHALVQILREVQAHQTWLPRDTLSLLAHELGLTLAHVEGVASFYRFFHMQPVGEYRL 102 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + T ML G E L+ ++ +P +DG +S C G C P +++ Sbjct: 103 LLSDNITDRML-GSEALLADLCQQLRVEPGRMRADGRVSVARSSCTGLCDQGPALLV 158 >gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400] gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Burkholderia xenovorans LB400] Length = 610 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++ +L AQ + W+SR + +A L + V +ATFY F SP G + Sbjct: 34 ALVQILREAQARHTWLSRELLGYIAGALGLTLAHVEGVATFYRFFHTSPAGEYRVLFSDN 93 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T M L ++CR Q+ R DG +S + C G C P ++I Sbjct: 94 ITDRMQGNAALLDDLCRRLGVQRGQMRE-DGRVSVDFCSCTGLCDQGPSLLI 144 >gi|161525534|ref|YP_001580546.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia multivorans ATCC 17616] gi|189349738|ref|YP_001945366.1| formate dehydrogenase subunit gamma [Burkholderia multivorans ATCC 17616] gi|221213581|ref|ZP_03586555.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD1] gi|160342963|gb|ABX16049.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia multivorans ATCC 17616] gi|189333760|dbj|BAG42830.1| formate dehydrogenase gamma subunit [Burkholderia multivorans ATCC 17616] gi|221166370|gb|EED98842.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD1] Length = 166 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 8/141 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 +R +++ +L Q++ G+V + +A L+++ V + T+Y F+ +P R Sbjct: 16 ARAGRSLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVT 74 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAP 148 +Q+C C GCE L E + + H H ++ ++ E V C G C +P Sbjct: 75 IQMCRAEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSP 134 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + + +TPE+ + ++ Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155 >gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] Length = 572 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92 SR + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G Sbjct: 46 SRQRDLLIEHLHLVQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEANI 105 Query: 93 -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V+VC + C + G + L+E + ++ + + C G C +AP V Sbjct: 106 PRLTVRVCDSITCAMFGADALVETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157 Query: 152 IGKD 155 +G + Sbjct: 158 VGHN 161 >gi|209519329|ref|ZP_03268128.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. H160] gi|209500213|gb|EEA00270.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. H160] Length = 161 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 27 NEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++++ R+ P R +++ +L Q++ G+V AA+ +A L+++ V + T+Y F Sbjct: 10 DQLVQRHAQPGR---SLMTILHAIQDELGYVPPAAVGPLAGALNLSRAEVHGVITYYHHF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144 + +P VQ+C C G E L + + + DG + E V C G C Sbjct: 67 RTTPAAPVT-VQLCRAEACRSMGTEALAQHIETHTGCRFDAGHEDGAKVELESVYCLGQC 125 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + ++P++ + + A Sbjct: 126 ALSPAMMLNGTLHARVSPQKFDALFAA 152 >gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] Length = 576 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 22/196 (11%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDKFGHLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G ++L QK L Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQQL---------QKALEDG 144 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 D + + C G C AP++ IG + + T E++E I A DT P + Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPDYE 199 Query: 188 RISSAPA-GGLTSLLD 202 ++ A GG +L D Sbjct: 200 TFAAYEADGGYATLKD 215 >gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] Length = 561 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 12/137 (8%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q+ G +S A + +A L +A + E+ATFY F + G Sbjct: 43 RRRDLLIEFLHLIQDAYGHLSAAHLRALAEELRVAQAEIYEVATFYAHFDVVKEGETPPP 102 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L G E+L + + + C G C AP++ + Sbjct: 103 ALTIRVCDSLACELAGAEQLKSALESGL--------DPAEVRVLRAPCMGRCDTAPVLEL 154 Query: 153 GKDTYEDLTPERLEEII 169 G + + TPE++E I Sbjct: 155 GHNHIDHATPEKVEAAI 171 >gi|39933809|ref|NP_946085.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris CGA009] gi|39647656|emb|CAE26176.1| putative NAD-dependent formate dehydrogenase gamma subunit [Rhodopseudomonas palustris CGA009] Length = 156 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + +L Q+ G+V + A +VA L+++ V + TFY F+ P G R +++ Sbjct: 22 EGATLLMLQALQQAFGYVPQDAEPMVAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKL 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L ++ +DG ++ E C G C AP M+ + Sbjct: 81 CRAEACQAAGGDALAAHAETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMMNERVVG 140 Query: 159 DLTPERLEEII 169 L +L+ ++ Sbjct: 141 RLDAVKLDALL 151 >gi|167755801|ref|ZP_02427928.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402] gi|167704740|gb|EDS19319.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402] Length = 242 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 +L Q + G++ A+E ++ + + +V + TFY+QF P G + VC T C Sbjct: 108 MLHEIQNELGYIPFEAMEKISETIGVPVSKVYGVVTFYSQFTTEPKGKHV-IAVCLGTAC 166 Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + G + ++++ + + DG S + C GAC AP+V + Sbjct: 167 YVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACGLAPVVSV 214 >gi|182677975|ref|YP_001832121.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633858|gb|ACB94632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 157 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+ Q+ G+V A+ ++A L+++ V + TFY F+ P G +++ Sbjct: 23 EGATLPIFHALQKAFGYVPAEAVPMIAEALNLSRAEVHGVLTFYHDFRSEPPGCHI-LKL 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L ++ K D ++ E V C G C AP M+ Sbjct: 82 CRAEACQAAGGDHLATGVERQLGIKLGETTPDQQVTLEPVFCLGLCAVAPSAMLDDQPIG 141 Query: 159 DLTPERLEEIID 170 + RL+ +++ Sbjct: 142 RVDAARLDALLN 153 >gi|317125323|ref|YP_004099435.1| formate dehydrogenase, subunit gamma [Intrasporangium calvum DSM 43043] gi|315589411|gb|ADU48708.1| formate dehydrogenase, gamma subunit [Intrasporangium calvum DSM 43043] Length = 157 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++ +L A + G + R +E +A++L+++ V + +FY F+ P V + Sbjct: 30 RGALMVVLHAAVAELGHLERTDVETIADVLNLSVADVHGVVSFYKDFRTDPAPAHT-VHL 88 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E + R ++ HR+ + +EV C G C P M+ + Sbjct: 89 CRGEACQAVGAESVFAQARAQL----AHRDD---VEVDEVFCLGNCALGPSAMVDGRLHG 141 Query: 159 DLTPERL 165 L+ ERL Sbjct: 142 RLSGERL 148 >gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium sp. 4-46] gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium sp. 4-46] Length = 572 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G A Sbjct: 48 RRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAIP 107 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V+VC + C + G E+L+ + +I + + C G C +AP + Sbjct: 108 ALTVRVCDSLTCAMHGAEELLAALQAEIGAQ---------VRVVRAPCVGLCDHAPAAEV 158 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200 G + T E + + A GDT P ID + AGG +L Sbjct: 159 GHNFLHRATVETVRAAVAA-----GDTHAHLPDTIDFDAYRDAGGYRTL 202 >gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] Length = 572 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92 SR + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G Sbjct: 46 SRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEADI 105 Query: 93 -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++VC + C + G ++L+E + ++ + + C G C +AP V Sbjct: 106 PRLTIRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157 Query: 152 IGKD 155 +G + Sbjct: 158 VGHN 161 >gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium extorquens PA1] gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta [Methylobacterium extorquens DM4] gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium extorquens PA1] gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens DM4] Length = 572 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92 SR + +I L Q+ G +S + +A+ + +A+ V E ATFY F + G Sbjct: 46 SRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEADI 105 Query: 93 -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++VC + C + G ++L+E + ++ + + C G C +AP V Sbjct: 106 PRLTIRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157 Query: 152 IGKD 155 +G + Sbjct: 158 VGHN 161 >gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 560 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 14/166 (8%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +S+E+ V V+ P R + +I L Q+ G +S + +A + + Sbjct: 20 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDACGHLSADHLAALAFEMKLGQ 77 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G ++VC + C L G E+L + Sbjct: 78 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLRAALEEGL-------- 129 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G + C G C AP++ +G + + TPE++ I A T Sbjct: 130 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAAGDT 175 >gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] Length = 537 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L + Q+ +S A + +A+ + ++ V E+A+FY F + G A Sbjct: 15 RRRDLLIEHLHKIQDAYDHLSAAHLRALADEMRLSQAEVYEVASFYHHFDIVKEGQAAPA 74 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L+G + L +V + + ++V C G C +AP V + Sbjct: 75 PLTIRVCDSVACSLKGADSLAKVLGETL--------DPAKIRIQKVPCIGRCASAPTVQV 126 Query: 153 GK 154 GK Sbjct: 127 GK 128 >gi|221201246|ref|ZP_03574286.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2M] gi|221206300|ref|ZP_03579313.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2] gi|221173609|gb|EEE06043.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2] gi|221179096|gb|EEE11503.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2M] Length = 166 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 8/136 (5%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V + +A L+++ V + T+Y F+ +P R +Q+C Sbjct: 21 SLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C GCE L E + + H H ++ ++ E V C G C +P + + Sbjct: 80 AEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSPSMTVN 139 Query: 154 KDTYEDLTPERLEEII 169 + +TPE+ + ++ Sbjct: 140 GVLHAKVTPEKFDALL 155 >gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] Length = 568 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 24/195 (12%) Query: 21 ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 E W V ++ P R + +I L R Q++ G +S A + +A L ++ V E+ Sbjct: 30 EDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDKFGHLSAAHLRALAEELRLSQAEVYEV 87 Query: 79 ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-L 133 A+FY F + G ++VC + C L G + L + L + +D + Sbjct: 88 ASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQAL---------KSALEQGTDPMQV 138 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA- 192 C G C AP+V +G + TPE + + A GDT P + + + Sbjct: 139 RILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPAYEALDAYR 193 Query: 193 PAGGLTSLLDNNSKK 207 AGG +L D + + Sbjct: 194 TAGGYATLADLRATR 208 >gi|149203816|ref|ZP_01880785.1| ATP synthase subunit E [Roseovarius sp. TM1035] gi|149142933|gb|EDM30975.1| ATP synthase subunit E [Roseovarius sp. TM1035] Length = 154 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q G++ AA +A L+++ + + +FY F+ +P G R +++C Sbjct: 23 LLPILHAMQAAFGYIPEAAHRPIAEALNISRAELHGVISFYHDFRANPAG-RHVLKICRA 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G L E K+ ++G ++ E V C G C AP M+ + Sbjct: 82 EACQAVGGAVLAEATLAKLGLAWHGTTANGAVTVEPVYCLGLCACAPAAMLDDRVVGRVD 141 Query: 162 PERLEEII 169 R++ ++ Sbjct: 142 AARIDALL 149 >gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens] gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 572 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + E++ P R + +I L Q+ G +S + +A+ + +A+ Sbjct: 25 PKGRQVDPHAKVEIEELLGTRP--RQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G R ++VC + C + G ++L+E + ++ Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQREL-------- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD 155 + + C G C +AP V +G + Sbjct: 135 ASDAVRVVRAPCVGLCDHAPAVEVGHN 161 >gi|254416932|ref|ZP_05030680.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC 7420] gi|196176296|gb|EDX71312.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 Q SP T+A V VC + C RG K+ +V N + RN D ++ ++ C C Sbjct: 101 LQPSPQKTKASVMVCKKSSCRKRGAAKVHQVMNNTLR----DRNLDDQVAIKDTGCMKQC 156 Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 P +VM K Y + PE + ++D G ++P + + S+ GG Sbjct: 157 KKGPCMVVMPDKARYNKVAPEDVPTLVDKHF---GSKLKPEANVSQRSTVRCGG 207 >gi|281357445|ref|ZP_06243933.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281316048|gb|EFB00074.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 150 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E I R P S +I L Q EG+VS +I ++ + + V + +FY QF+ Sbjct: 9 EKIGREP-----SNLIKGLQAVQGVEGYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKR 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G + + +C T C ++G + E + + + G S E V C G C A Sbjct: 64 VKPG-KYKIAICDGTACHIKGSPLVQEWVSRALGIEDGQTDERGHFSLETVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++ + Y L + +I+ + Sbjct: 123 PVMSVNGRVYGKLDRKSTIKILKEY 147 >gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196] gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Nitrosospira multiformis ATCC 25196] Length = 598 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 1/129 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L+ QE ++ AI +A L++ + V A FY+ L P G R V Sbjct: 28 LLQILIDVQEMYCFIPPEAITFIARHLNLPRVNVEGAAGFYSFLSLEPAG-RYRVLFSDN 86 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 + G E+L+ N++ +P + DG +S C G C P +I L+ Sbjct: 87 VTDRMLGNEELMRHFCNRLWLEPGKVSEDGLISTNFTSCTGMCDQGPTALINGWPVTRLS 146 Query: 162 PERLEEIID 170 ER++ I D Sbjct: 147 KERIDLIAD 155 >gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mesorhizobium sp. BNC1] gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chelativorans sp. BNC1] Length = 557 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 14/144 (9%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q++ G +S + +A + ++ V E+ATFY F + G A Sbjct: 35 RRRDLLIEFLHLIQDRYGCLSARHLRALAEEMRLSQAEVYEVATFYDHFDVVKEGEAAPP 94 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVM 151 ++VC + CML G E LI L +D + C G C AP Sbjct: 95 ALTIRVCDSVSCMLAGAETLI---------AELQAGADPAAIRIMRAPCMGRCAGAPAAR 145 Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175 +G + T E L + A TG Sbjct: 146 VGDREVDGATAEGLLGMAAAGETG 169 >gi|317970223|ref|ZP_07971613.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp. CB0205] Length = 145 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A++ +L AQ+ G +S + + VA +L + RV A+FY F+LSP R VC Sbjct: 21 ALLEVLAAAQQIYGHLSPSLLRHVAGLLRLPLSRVQGTASFYHLFRLSPP-PRHQCLVCT 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE---VECQGACVNAPMVMIGKDTY 157 T C ++G L + + + Q W E V C G+C P++++ D + Sbjct: 80 GTACHVQGAGLLFKALQTTLKQP-----------WCELGSVRCIGSCSGGPLLVVDGDIW 128 Query: 158 EDLT 161 T Sbjct: 129 THQT 132 >gi|126640813|ref|YP_001083797.1| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978] Length = 112 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A +L ++ + +ATFY + PVG R + +C + C L G E L E + ++ Sbjct: 1 MNAIAQLLTISVADLEGVATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQREL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + DG + + C G C P +MI +DT+ + ++++++ + Sbjct: 60 GIQFGQTTQDGRFTLLPICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 111 >gi|307730639|ref|YP_003907863.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia sp. CCGE1003] gi|307585174|gb|ADN58572.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. CCGE1003] Length = 161 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 23 AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 A+ E+++R+ P R +++ +L Q++ G+V + +A +++++ V + T+ Sbjct: 6 AVAPEELVARHAQPGR---SLLAVLHAIQDELGYVPPDTVAPLARVMNLSRAEVHGVITY 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSDGTLSW 135 Y F+ P VQ+C C G E L IE CR + + + Sbjct: 63 YHHFRTQPAAPVT-VQLCRAEACRSMGTEALARHIESHTGCRFDAEHE-----AGAAVEL 116 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P +M+ + +TP++ + I A S Sbjct: 117 ESVYCLGQCALSPAMMVNGTLHARVTPQKFDAIFAAAS 154 >gi|312795434|ref|YP_004028356.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Burkholderia rhizoxinica HKI 454] gi|312167209|emb|CBW74212.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) (EC 1.2.1.2) [Burkholderia rhizoxinica HKI 454] Length = 192 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G++ + I +A ++++ V + T+Y F+ SP VQ+C Sbjct: 38 SLLSVLHAIQDDAGYIPDSVIAPLAQAMNLSRAEVHGVITYYHHFRTSPPAAVT-VQLCR 96 Query: 101 TTPCMLRGCEKLIEVCRNKI-HQKPLHRNSD--------------GTLSWEEVECQGACV 145 C G E L + H+ R+ D + + C G C Sbjct: 97 AESCRAMGSEALARHAETRTGHRFDACRHGDDHRAAPPAAPLAGHPAVELQSAYCLGLCS 156 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ Y +TPE+L+ ++ A Sbjct: 157 TSPAMMVNGKPYARVTPEKLDTVLAA 182 >gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] Length = 562 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + + + V ++ P R + +I L Q++ G +S A + +A + ++ Sbjct: 20 QPKGRQYEDGAMAEVRALLGDKP--RDRDLLIEHLHLIQDEYGHLSAAHMRALAEEMRLS 77 Query: 72 YIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 V E+A FY+ F + A ++VC + C L G + L+ ++ + Sbjct: 78 QAEVYEVAKFYSHFDVVKEDEIAPPDLTIRVCDSLSCELAGAQALMAALKDGL------- 130 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C G C AP++ IG + + TP+ +E+ I A T Sbjct: 131 -DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPQLVEKAIAAQDT 176 >gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 581 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 4/110 (3%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S+ A+ ++ L + +A+FY+ F L R V VC Sbjct: 29 LLPALHAVNDRVGWISQGALNLICETLHVPPADAYGVASFYSLFALDERPERV-VHVCTD 87 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C + G E + +V + R G ++W C G C AP + Sbjct: 88 LACRITGAETVCDVLTEHVGAAGKAR---GGVTWLRSPCLGVCERAPAAL 134 >gi|315185456|gb|EFU19227.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta thermophila DSM 6578] Length = 164 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YPP R +I ++ ++ +E VA L + + I +FY+ F P G Sbjct: 11 YPPRRDNLLLILHDIQDHNPRNYLPDEEVEEVARYLGIPVSELDGIISFYSMFSRRPRG- 69 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R +++C + C L G L + + K DG + E V C G C P +M+ Sbjct: 70 RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNCLGCCDKGPSLMV 129 Query: 153 GKDTYEDLT 161 + + +T Sbjct: 130 NDELHTRMT 138 >gi|254441245|ref|ZP_05054738.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Octadecabacter antarcticus 307] gi|198251323|gb|EDY75638.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Octadecabacter antarcticus 307] Length = 182 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/144 (18%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++++R+ S + ++P+L Q + G++ ++++A+ ++ V + +FY F Sbjct: 37 MQDILARH--SVQEGPLLPILHSVQAEFGFIPSDVVQIIADHQNITRAEVHGVISFYHDF 94 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P G +++C C G L + K+ ++G ++ E V C G C Sbjct: 95 RDAPAGKHT-IKICRAEACQAVGSNALSKRVLEKLGVDWGGTTANGAVTIEAVYCLGLCA 153 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 P M+ + +L++++ Sbjct: 154 CGPAAMVDNKVVGRVDAAKLDKLL 177 >gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] Length = 571 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 13/153 (8%) Query: 27 NEVISRYPPSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++V S S CQ +I L Q++ G +S A I + + ++ + E+ATFY F Sbjct: 32 DDVRSLLGSSPCQRDLLIEYLHLIQDKFGHLSAAHIRALGEEMRISMAEIYEVATFYAHF 91 Query: 86 QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 + G ++VC + C L G ++L + K + C Sbjct: 92 DVVKEGETPPPALTIRVCDSLSCELAGAQQLKVALEGGLDAK--------NVRVLRAPCM 143 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C AP++ IG + + TPE++ I A T Sbjct: 144 GRCDTAPVLEIGHNHIDHATPEKVLAAIAAQDT 176 >gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] Length = 573 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 14/141 (9%) Query: 20 EESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + +A+ ++EV++ P + + +I L + Q+ G + + + +A L ++ V E+ Sbjct: 26 QAAALDMSEVLAILGPGAHRRDLLIEYLHQLQDHLGCLPKTHLSALAECLKLSQTEVFEV 85 Query: 79 ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 ATFY F + + V V+VC C + G E+LIE + T+ Sbjct: 86 ATFYHHFDVVESKNAVNHTLTVRVCNGPSCCMAGAEELIEKLPTLL---------GSTVR 136 Query: 135 WEEVECQGACVNAPMVMIGKD 155 + V C G C AP V +G+ Sbjct: 137 VQAVPCIGRCEQAPAVAVGQH 157 >gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 627 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 51 EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE 110 ++GW+ A + +A L + RV A+FY+ P G + T ML G + Sbjct: 28 ARDGWLPPATLSALAGALGIPRARVESTASFYSFLHTRPAGEYRILFSDNITDRML-GNQ 86 Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 L++ +K+ +P + DG C G C P ++ T LT ER++E+ Sbjct: 87 ALMQTLCDKLWLQPGKVSEDGLARVSTTSCTGMCDQGPALLANGRTITRLTLERIDEM 144 >gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] Length = 570 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 17/159 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L Q++ G +S A + +A + M+ V E+ATFY F + G ++ Sbjct: 57 LIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVATFYAHFNVVKEGETPPPALTIR 116 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C + C L G + L + + + C G C AP + IG + Sbjct: 117 ICDSLSCELAGAQALKTALEDGLDAS--------EVRVVRAPCMGRCDTAPALEIGHNFV 168 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 + T E+++++I A GDT P + + AGG Sbjct: 169 DHATLEQVKQVIAA-----GDTHVHMPDYEAFDAYVAGG 202 >gi|89055051|ref|YP_510502.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Jannaschia sp. CCS1] gi|88864600|gb|ABD55477.1| formate dehydrogenase gamma subunit [Jannaschia sp. CCS1] Length = 167 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q G+V A ++A L++ + + +FY F+ P G R +++C Sbjct: 31 LLPILHDVQAAFGYVPDDARALIATALNITEAELHGVISFYHDFRRKPAGKRV-LKICRA 89 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156 C G + + ++ +DG L+ E + C G C P MI G+ T Sbjct: 90 EACQAMGANAMSDAVLAQLGLGWGETAADGGLTVEPIYCLGLCACGPAAMIDGKLKGRVT 149 Query: 157 YEDLTPE 163 + L E Sbjct: 150 ADSLIAE 156 >gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] Length = 566 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 16/167 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P SR +I L Q+ G +S I +A + Sbjct: 26 PKGRQLEDQAHSEVLELLGEQPRSR--DMLIEFLHLIQDAYGHLSAPHIRALAEEMRTGQ 83 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E+L QK L Sbjct: 84 AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQL---------QKALEDG 134 Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 D + + C G C AP++ IG + + T E++E I + T Sbjct: 135 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATLEKVEAAIASDDT 181 >gi|85707198|ref|ZP_01038284.1| ATP synthase subunit E [Roseovarius sp. 217] gi|85668252|gb|EAQ23127.1| ATP synthase subunit E [Roseovarius sp. 217] Length = 154 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 1/128 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P+L Q+ G + AA +A L+++ + + +FY F+ +P G R +++C Sbjct: 23 LLPILHAMQDAFGHIPEAAHRPIAEALNISRAELHGVISFYHDFRANPAG-RHVLKICRA 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G L + K+ ++G ++ E V C G C AP M+ + Sbjct: 82 EACQAVGGTALADATLTKLGLDWHGTTANGAVTVEPVYCLGLCACAPAAMLDDRVVGRVD 141 Query: 162 PERLEEII 169 R++ ++ Sbjct: 142 AARMDTLL 149 >gi|148554395|ref|YP_001261977.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas wittichii RW1] gi|148499585|gb|ABQ67839.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas wittichii RW1] Length = 159 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++PLL QE+ G+V + VA ++++ V + +FY F+ +P G R V+ Sbjct: 24 RGALLPLLHDLQEELGFVGEETVAAVAAAMNLSRAEVHGVVSFYHDFRKAPAG-RHVVKY 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C C RG + +++ +DG ++ E V C G C P ++ Sbjct: 83 CRAESCRSRGGVAIEAALADRLRVTMGETRADGQVTLEPVYCLGLCAIGPNALV 136 >gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] Length = 627 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ V+ V++R+ + ++ +L QE+ W+S + VA + +V +A Sbjct: 18 DAGTVVSAVLARHGAD--GTRLMQILREIQEETEWLSPDILTRVAEGTRLPRGQVEGVAG 75 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F P+G + T M + + +C+ K+ KP + DG +S + C Sbjct: 76 FYHFFHTEPLGRYRVLWSDNITDRMAGNADLMARMCK-KLWLKPGRVSEDGLVSVDTTSC 134 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170 G C P +++ +T +R+++I++ Sbjct: 135 TGLCDQGPALLVNYRPITRMTAQRVDQIVE 164 >gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien [Candidatus Puniceispirillum marinum IMCC1322] gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 21/150 (14%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++ P+R +I L Q+ E +S + +A+I+ + V E+A+FY F Sbjct: 43 VRALLGNISPTR--DMLIEYLHMIQDSEKHLSARHLAALAHIMRIPMAEVWEVASFYDHF 100 Query: 86 QL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 L P+ T V+VC + CM+ G E ++E + K + + Sbjct: 101 DLVKEDETAPPLCT---VRVCTSLSCMMAGGETMLEKLQPYASDK---------VRFVPA 148 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 C GAC AP +G E + E L+ + Sbjct: 149 PCIGACDKAPAAAVGHKLVEHASFEALKAV 178 >gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] Length = 626 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++++ +L+ AQE G++ AI+ +++ L + + +A+FY+ LSP G V Sbjct: 24 NSLLQILIGAQEIHGFIHADAIDYLSSALKLPRAMIEGVASFYSFLYLSPHG-EYRVLFS 82 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + G + L++ +++ +P + DG L C G C P +++ Sbjct: 83 DNITDRMAGNQNLMQRLCSQLWVEPGKASEDGLLWVNTTSCTGMCDQGPAMLVNNIAINR 142 Query: 160 LTPERLEEI 168 LT ++++ I Sbjct: 143 LTQDKVDRI 151 >gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] Length = 582 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q++ G +S + +A+ + +A V E+ATFY F + A Sbjct: 63 RRRDLLIEHLHAVQDKFGHLSARHLAALAHDMRLAMAEVWEVATFYAHFDVVKEDAAAPP 122 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V+VC + C L G EK+++ L S + C GAC AP+ + Sbjct: 123 AVTVRVCDSLSCALAGAEKVLDT---------LQSGSGSDVRVIRAPCMGACDKAPVAAV 173 Query: 153 GKDTYE 158 G E Sbjct: 174 GHHLVE 179 >gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 656 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+SR A++ + L + +A+FY F L R V +C Sbjct: 55 LLPALHAVNDRVGWISRPALDHICRRLTVPPAEAYAVASFYAMFALRRRPRRV-VHLCTD 113 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C G +++ ++ H DG +W E C G C AP + Sbjct: 114 IACAAAGSDRMRARLTERLGPPGGH---DGEAAWHESPCLGMCERAPAAL 160 >gi|169334686|ref|ZP_02861879.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM 17244] gi|169257424|gb|EDS71390.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM 17244] Length = 160 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 40 SAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 S ++ ++++ Q Q +++ + +A+ + + +V E+ T++ G + + Sbjct: 23 SDLLQIVLKIQRQIPGKFINFDIAKYIADEMQIPLSKVSEVVTYFDALSTKKRG-KYILG 81 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C T C L G +K+ E+ ++ K DG + E V C GAC AP V + + Sbjct: 82 LCNATACSLNGKDKIKEIFERELGIKEGETTEDGLFTLELVPCFGACDVAPAVRVNDNVV 141 Query: 158 EDLTPERLEEII 169 L E+++ +I Sbjct: 142 GRLNEEKIKALI 153 >gi|255659121|ref|ZP_05404530.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544] gi|260848566|gb|EEX68573.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544] Length = 168 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-VQVCGT 101 I L ++A + +V +A+ L M + + FY++ LSPV + +QVC + Sbjct: 36 ILLEVQALNERHYVPEPTAYYIADRLKMRVTNIFDCLKFYSE--LSPVPRAKYPIQVCCS 93 Query: 102 TPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 C + + +LI + K DG + E+V C GAC AP V I Y+ Sbjct: 94 PACRVNRVDSHRLISTLERLLDIKLGETTYDGRFTLEKVTCIGACDRAPAVRINGHVYDH 153 Query: 160 L-TPERLEEIIDAF 172 L T E++E ++ + Sbjct: 154 LDTQEKIETLLRSL 167 >gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72] gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72] Length = 602 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 S+++ +L+ Q++ G+++ +A+ VA LD+ V +A FY+ SP G R + Sbjct: 22 SSLLQVLIAVQDRLGYLAPSALTEVAAALDLPRAHVEGVAGFYSFLHTSPAG-RYRILFA 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 ++G +L+ K+ +P + DG + C G P ++ Sbjct: 81 DNVIERMQGSAELMHALCGKLWVEPGRVSEDGLVGVAPTSCIGMGDQGPAALVNGRPITR 140 Query: 160 LTPERLEEIID 170 LT R+ EI + Sbjct: 141 LTHARINEIAE 151 >gi|84499615|ref|ZP_00997903.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] gi|84392759|gb|EAQ04970.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] Length = 162 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 1/127 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L QE G + A ++ L + + + +FY F+ P G R V+V Sbjct: 23 EGALLPILHALQEAYGHIPEGAYPLLTATLGITRAELHGVVSFYHDFRDVPAG-RHVVKV 81 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + ++ DG ++ E V C G C P M+ Sbjct: 82 CRAEACQSVGANAMAATLLDRFGLDWHGTTPDGRVTIEPVYCLGLCACGPAAMVDGKLIG 141 Query: 159 DLTPERL 165 P +L Sbjct: 142 RADPAKL 148 >gi|318041124|ref|ZP_07973080.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp. CB0101] Length = 152 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +N V+ R+ +I +L AQ+ G +S + +A L + + RV A+FY F Sbjct: 14 LNSVLQRHGHQ--AHGLIEVLNHAQQLYGHLSEPLLRHIARQLQLPFSRVQGTASFYHLF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + R VC T C + G +L+ RN ++ + V C G C Sbjct: 72 RFK-APARHSCLVCTGTACHVLGAAQLLADLRNAAMEEL-------GVELGSVRCIGTCS 123 Query: 146 NAPMVMIGKDTYEDLTP----ERLEEI 168 AP+V++ + + L+ +RL E+ Sbjct: 124 GAPLVVVDGEVWNHLSSAAVLKRLREL 150 >gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] Length = 588 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 12/137 (8%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR-- 93 +R ++ L Q+Q + + +I +A L + ++ + FY+ F SP G Sbjct: 15 TRQNDHLLHRLYDLQQQFHHIPQQSIINLATELKLPISQIEGVVDFYSFFHRSPRGRYDI 74 Query: 94 --AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 ++ CG M + CEKL + P + +DG++S + C G C P ++ Sbjct: 75 LFSNCTSCGDLAMMQQLCEKL--------NVSPGNTRADGSVSIDATSCIGMCDQGPALL 126 Query: 152 IGKDTYEDLTPERLEEI 168 + T L+ +RLE I Sbjct: 127 VNGRTITQLSAQRLEMI 143 >gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 596 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 17/122 (13%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G K++E N+I ++ L ++ E C G C P++++ Sbjct: 3 RSHVLVCGGTGCTSSGSPKIMEALHNEIKKQGLEEE----VAVVETGCHGLCALGPIMIV 58 Query: 153 GKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI----SSAPAGGLTSLLDNNSK 206 D Y + P + EI+ + + G + R+ + +P GG+ +L D + Sbjct: 59 YPDATFYSMVQPNDIPEIVS-------EHLLKGRVVTRLLYQETVSPTGGIKALRDTDFY 111 Query: 207 KR 208 K+ Sbjct: 112 KK 113 >gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] Length = 561 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 23/188 (12%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89 R + +I L Q+ G +S A + +A + ++ V E+ATFY F + P Sbjct: 43 RRRDLLIEFLHLVQDANGHLSAAHLRALAEEMRLSQAEVYEVATFYAHFDVVKESETPPP 102 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 T ++VC + C L G + L + + + C G C AP+ Sbjct: 103 ALT---IRVCDSLSCELAGAQALKAALEDGL--------DPAQVRVLRAPCMGRCDTAPV 151 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 + IG + + TP +++ I A DT P ++S A G ++L++ + Sbjct: 152 LEIGHNHIDHATPAKVQAAIVA-----DDTHAHLPDYQTLASYCADGGYAVLEHLRAQGD 206 Query: 210 KKKKDDKI 217 + DK+ Sbjct: 207 WQAVQDKV 214 >gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] Length = 570 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 21 ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + A W V ++ P R + +I L Q++ G +S A + +A + ++ V E+ Sbjct: 36 QDAAWEEVRALLGERP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEEMRLSMAEVYEV 93 Query: 79 ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-L 133 A+FY F + G ++VC + C L G + L + L D T + Sbjct: 94 ASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQAL---------KSALEEGLDPTQV 144 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP++ +G + + TPE+++ I A T Sbjct: 145 RVLRAPCMGRCDTAPVLELGHNHIDHATPEKVQAAIVAQDT 185 >gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] Length = 570 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R +I L Q++ G +S A + +A + M+ V E+ATFY F + G Sbjct: 52 RRADVLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVATFYAHFDVVKEGEAPPP 111 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 +++C + C L G + L + + + C G C AP + I Sbjct: 112 ALTIRICDSLSCELAGAQALKTALEDGLDAS--------EVRVVRAPCMGRCDTAPALEI 163 Query: 153 GKDTYEDLTPERLEEIIDAFST 174 G + + T E+++++I A T Sbjct: 164 GHNFVDHATLEKVKQVIAAGYT 185 >gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] Length = 561 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SPVGTRA 94 +I L Q G +S A + +A + M+ V EIATFY F + P T Sbjct: 48 LIEFLHLIQGAYGHLSAAHLRALAEEMRMSMAEVYEIATFYAHFDVVKEDEAPPPALT-- 105 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC + C L G ++L + + + C G C AP++ +G Sbjct: 106 -IRVCDSLSCELAGAQQLKAALEDGLDASEVRVL--------RAPCMGRCDTAPVLELGH 156 Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLD 202 ++ T E++E I A GDT P + + A GG +L D Sbjct: 157 AHIDNATVEKVEAAIAA-----GDTHAHIPDYETFDAYVAEGGYAALKD 200 >gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxidans DMS010] gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxydans DMS010] Length = 565 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 19/142 (13%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------S 88 SR + +I L + Q+ ++S + +A+ + ++ V E+ATFY F + Sbjct: 43 SRQKDLLIEHLHKIQDFYHYISAPHLVALAHEMKLSRAEVYEVATFYHHFDVIKEDQTPP 102 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P T V+VC + C + G E+LI + Q + + V C G C AP Sbjct: 103 PPLT---VRVCDSMTCEMLGAEELIHSLEQGLGQD---------VRVQRVPCIGRCDKAP 150 Query: 149 MVMIGKDTYEDLTPERLEEIID 170 + ++G + E ++ E +D Sbjct: 151 VAVVGMNPVEHADAAQVIEFVD 172 >gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] Length = 560 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 28/186 (15%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +I P R +I L Q+ G +S + +A ++ ++ V E+ATFY F Sbjct: 33 VQALIGSRPLDR--DLLIEFLHLIQDAYGHLSARHLRALAEVMRLSMAEVYEVATFYAHF 90 Query: 86 QL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEE 137 + P T ++VC + C L G ++L + L D T + Sbjct: 91 DVVKENETPPPALT---IRVCDSLSCELAGAQQL---------KAALEDGLDPTEVRVLR 138 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GG 196 C G C AP++ +G + TPE++ I A T D P + + A GG Sbjct: 139 APCMGRCDTAPVLELGHHHIDHATPEKVRAAIAANHT-HADI----PDYETFAKYQAEGG 193 Query: 197 LTSLLD 202 T+L D Sbjct: 194 YTALQD 199 >gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] Length = 563 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%) Query: 21 ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + A W V ++ P R + +I L Q+ G +S A + +A + ++ V E+ Sbjct: 27 DDAAWAEVQALLGDRP--RHRDLLIEFLHLIQDAHGCLSAAHLRALAEEMRLSQAEVYEV 84 Query: 79 ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 ATFY F + PV +++C + C L G ++L + + + Sbjct: 85 ATFYAHFDVVKEGEPVPPALTIRICDSLSCELAGAQQLKTALEDGLDAS--------EVR 136 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 C G C AP + +G + + T +++ I A GDT P + S+ A Sbjct: 137 VLRAPCMGRCDTAPALELGHNHIDHATFDKVAAAIAA-----GDTHAHVPDYEGYSAYVA 191 Query: 195 GG 196 G Sbjct: 192 NG 193 >gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72] gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp. BH72] Length = 571 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L R Q+ G + + +A + +A V E+ATFY F + P G V+ Sbjct: 41 LIEYLHRLQDAHGALYADHLAALAEAMKLAQAEVYEVATFYHHFDVVPAGETPPPLLTVR 100 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 VC + C L G +L + ++ + + + V C G C AP+ ++G++ Sbjct: 101 VCDSLTCALYGGPELAAELQGRLGAE---------VRVQRVPCVGRCDCAPVAVVGQN 149 >gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] Length = 609 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L + Q + ++ AAIE ++ +L++ +++ + FY+ F L+P G + Sbjct: 19 LLQILRQIQSRYHYIPEAAIEQLSGLLNIPRTQIIGVVEFYSFFHLAPRGQYELLISDSI 78 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 T ML G + L + K+ DG +S + C G C P ++ Sbjct: 79 TDHML-GKKDLFDYLAKKLDVAVGEVREDGVVSLDNTSCTGMCDQGPAGLV 128 >gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] Length = 569 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQ 97 +I L Q++ G +S A + +A + ++ V E+ATFY F + G ++ Sbjct: 56 LIEHLHLIQDEYGHLSAAHLRALAEEMRLSMAEVYEVATFYAHFDVVKEGEVPPPALTIR 115 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACVNAPMVMIGKDT 156 +C + C + G ++L + L D T + C G C AP + IG + Sbjct: 116 ICDSLACEMAGAQEL---------KAALEEGLDATQVRVVRAPCIGRCDTAPALEIGHNF 166 Query: 157 YEDLTPERLEEIIDA 171 + T E++E +I A Sbjct: 167 VDHATVEKVEAVIAA 181 >gi|260886838|ref|ZP_05898101.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC 35185] gi|330839359|ref|YP_004413939.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas sputigena ATCC 35185] gi|260863437|gb|EEX77937.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC 35185] gi|329747123|gb|AEC00480.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas sputigena ATCC 35185] Length = 163 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 40 SAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-V 96 + ++ +L+ Q+ + +V A VA L + + + TFY LSPV + + Sbjct: 28 TQIVGILLDVQDLFERHYVPEPAAYYVAEKLPLKISLIYDCLTFYAS--LSPVPRAKYPI 85 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 QVC + C + E L ++ + DG + E+ C GAC AP V + + Sbjct: 86 QVCDSVVCRINENETLFSALKSLLGIDVGEVTYDGRFTLEKTPCFGACDIAPAVRVNGEV 145 Query: 157 YEDL-TPERLEEII 169 Y L + E++EE++ Sbjct: 146 YGHLDSREKIEELL 159 >gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 219 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q+Q GWV AI +A++L + V +ATFY+Q PVG R ++ Sbjct: 139 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 197 Query: 99 CGTTPCMLRGCEKL 112 C + C + G + + Sbjct: 198 CDSVVCHITGYQGI 211 >gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] Length = 598 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+H+ VCG T C+ GCE++ E + ++ ++ L + E C G C P++++ Sbjct: 7 RSHILVCGGTGCVSSGCEEVQEALKEELDKQGLTNE----IKIVETGCHGFCEKGPILIV 62 Query: 153 GKDT--YEDLTPERLEEIID 170 + Y ++ PE LEE+++ Sbjct: 63 YPEGVFYCEVQPEDLEELVE 82 >gi|226323627|ref|ZP_03799145.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758] gi|225207811|gb|EEG90165.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758] Length = 103 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVE 139 FY F P G ++VC T C +R ++E ++ + H + D + E V Sbjct: 5 FYENFSFEPKGKYV-IKVCDGTACHVRKSIPILEALYKELGLNEHKHTSDDMLFTVETVS 63 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C GAC AP + + + + ++PE++ ++++ Sbjct: 64 CLGACGLAPAITVNDEVHPKMSPEKVIKLLE 94 >gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] Length = 603 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V +++ + R + I L + Q++ G++S A++ +A L + + + ++A+FY+ Sbjct: 9 VKDIVKEFGADRTRLTDIALAV--QQRFGFISDDAVQAIATGLGVHAVEIEDMASFYSFL 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +P G R +++ T ++G + + ++DG + E G Sbjct: 67 DRAPRG-RFRIRLSKTPISFMKGATDVARAFEEALGLSLGDTSADGQFTLEWTSDIGMAD 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P +I LTPE + +I+ A Sbjct: 126 QEPSALINSTVLTALTPEDVPQIVAAL 152 >gi|295704727|ref|YP_003597802.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319] gi|294802386|gb|ADF39452.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319] Length = 126 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RNK+ + L D T+ C G C +AP+ Sbjct: 8 GTKHHVLICNGSSCMRKGGEEATQAIRNKVTELDL----DETVHTTRTRCNGRCKDAPVA 63 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T I++ G Sbjct: 64 IVYPSGDWYKQVTETVAHRIVEEHLAG 90 >gi|224696914|emb|CAX51536.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 455] gi|224696917|emb|CAX51538.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 402] gi|224696926|emb|CAX51544.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 403] gi|224696929|emb|CAX51546.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 404] gi|307697997|gb|ADN86369.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum] Length = 91 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ +PVG + + +C PC L G E+ E + K+ DG + +E EC GAC Sbjct: 2 YETAPVG-QHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60 Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +AP+V++ ++ E+++++++ S Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90 >gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 626 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L + G++S A+ VA L + V +ATFY F + P R V VC Sbjct: 50 LLPALHAVSDAVGYLSEGALNHVATRLSVPPADVYGVATFYAMFTVEPRARRV-VHVCDD 108 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C G E L + + + + W C G C AP VM Sbjct: 109 VACGPVGGEDLAARLTADLGPEGVGEEA----CWVRSPCLGLCERAPAVMF 155 >gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] Length = 565 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 11/132 (8%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97 +I L Q++ +S + +A L ++ V E+A+FY F + + ++ Sbjct: 49 LIEYLHLIQDKFKHLSTQHLAALAEELRLSQTEVYEVASFYAHFDIVKEDEEIPPSLTIR 108 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C L G + L+ K+ +K N G + C G C AP + IG + Sbjct: 109 VCDSLSCELAGAQDLL----FKLGEK---YNGGGKVRVVRAPCMGRCDTAPTLEIGHNHI 161 Query: 158 EDLTPERLEEII 169 ++ E++E+ I Sbjct: 162 DNANEEKVEKAI 173 >gi|224696908|emb|CAX51532.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica HKI 454] gi|224696911|emb|CAX51534.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 512] gi|224696923|emb|CAX51542.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 513] gi|307697982|gb|ADN86359.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697985|gb|ADN86361.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697988|gb|ADN86363.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697994|gb|ADN86367.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ +PVG + + +C PC L G ++ E + K+ DG + +E EC GAC Sbjct: 2 YETAPVG-QHKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60 Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +AP+V++ ++ E+++++++ S Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90 >gi|60687924|gb|AAX30295.1| SJCHGC02806 protein [Schistosoma japonicum] Length = 82 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 28/58 (48%) Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 G E ++ + + +P D + EVEC GACVNAPM+ I D Y RL Sbjct: 6 GSEAILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYILFNINRL 63 >gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 562 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94 R + +I L Q++ G +S A I ++ + + + E+A+FY F + G Sbjct: 44 RDRDLLIEFLHLVQDKFGHISAAHIRALSEEMRVGQAEIYEVASFYAHFDVVKEGETPPP 103 Query: 95 --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L G E+L + + + + + C G C AP++ I Sbjct: 104 ALTIRVCDSLSCELAGAEQLKKALEDGM--------NPAQVRVLRAPCMGRCDTAPVLEI 155 Query: 153 GKDTYEDLTPERLEEIIDAFST 174 G + + T ++E I + T Sbjct: 156 GHNHIDHATLAKVETAIASDDT 177 >gi|19115849|ref|NP_594937.1| conserved eukaryotic protein [Schizosaccharomyces pombe 972h-] gi|3183091|sp|O13691|NDUV2_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit homolog C11E3.12, mitochondrial; Flags: Precursor gi|2330670|emb|CAB11191.1| conserved eukaryotic protein [Schizosaccharomyces pombe] Length = 162 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 18/163 (11%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI--LDMAYIR 74 F E+ +++RYP +A++PLL AQ Q G W+ A+ +A++ + + Y+ Sbjct: 7 FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCML----RGCEKLIEVCRNKIHQKPLHRNSD 130 L I + F P R V++C + C +G CR+ + + Sbjct: 67 SL-ILAYPNDFFWRPKKPR--VRICNSWMCQQAAEEQGNSNWDSQCRSVATKYGFDVENT 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C G C P + I Y T E+L +I++A + Sbjct: 124 G--------CLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALT 158 >gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] Length = 1206 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 70/144 (48%), Gaps = 17/144 (11%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP + ++P+++ +++G++S +I ++ L M ++ Sbjct: 631 YNANEAAGLDEILAKYPKEK--EYLMPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIES 688 Query: 78 IATFYTQFQLSPVGTRAH-----VQVC-GTTPCMLRGCEKLIEVCRN--KIHQKPLHRNS 129 I + Y F R H + +C CM++G +L++ + IH+ Sbjct: 689 ILSSYHYF------PREHTIAILMSICVHCHNCMMKGQGRLLKTIQETYDIHETHGGVAK 742 Query: 130 DGTLSWEEVECQGACVN-APMVMI 152 DG+ + + G CVN AP +MI Sbjct: 743 DGSFTLHTLNWLGYCVNDAPAMMI 766 >gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Alicycliphilus denitrificans BC] gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans BC] Length = 633 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 12/162 (7%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + ++ A+ + R P + +I L ++ G + + +A ++++ Sbjct: 32 QPEPQALADVQAL----IGPRPPEGHARDLLIEHLHLINDRHGALHERHLVALARLMNLP 87 Query: 72 YIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F++ G R ++VC + C L G +L+ + L Sbjct: 88 MAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR-----LRAL 142 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 G + + V C G C AP+ ++ + T ER+ +D Sbjct: 143 GHGDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184 >gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16] gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] Length = 602 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ RY R + +I +L Q + G + A + + L ++ + + E A+FY F Sbjct: 5 ITTILERYRSDRTR--LIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYHFF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + + +C + + G + + E + + + +G + C G Sbjct: 63 LDKPSG-KYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGLSD 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P ++I K + L P ++ +II G+ Sbjct: 122 QEPAMLIDKVVFTRLRPGKITDIIAQLKQGR 152 >gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] Length = 633 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 12/162 (7%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + ++ A+ + R P + +I L ++ G + + +A ++++ Sbjct: 32 QPEPQALADVQAL----IGPRPPEGHARDLLIEHLHLINDRHGALHERHLVALARLMNLP 87 Query: 72 YIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F++ G R ++VC + C L G +L+ + L Sbjct: 88 MAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR-----LRAL 142 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 G + + V C G C AP+ ++ + T ER+ +D Sbjct: 143 GHGDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184 >gi|307697976|gb|ADN86355.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697979|gb|ADN86357.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ +PVG + + +C PC L G ++ E + K+ DG + +E EC GAC Sbjct: 2 YETAPVG-QHKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60 Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +AP+V++ ++ E+++++++ S Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90 >gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] Length = 611 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 3/168 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ +L + Q++ + A+ ++A + + V + +FY F G +++C Sbjct: 23 MMDILWQVQDKLRCIDGDAMSLIAALTGTYRVEVEGVVSFYAFFSDKRKGD-ITIRLCDD 81 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 G + + E + + +P ++DG S E C G C AP V+I LT Sbjct: 82 IVDRHAGAQAVAEAFSDALGIQPGETSADGAFSLEFTPCIGMCDQAPAVLINDVVVTRLT 141 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 P +++ I+ + G D +S P + +++ NN ++ G Sbjct: 142 PAKVKNILRTLRKTKDPQTLIGKTGDGANSHPL--VQAMVRNNIRQPG 187 >gi|266619596|ref|ZP_06112531.1| putative NADP-reducing hydrogenase, subunit A [Clostridium hathewayi DSM 13479] gi|288868846|gb|EFD01145.1| putative NADP-reducing hydrogenase, subunit A [Clostridium hathewayi DSM 13479] Length = 149 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 12/149 (8%) Query: 28 EVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 E++ Y R Q ++ +L QE G++ +A + +L++ Y Sbjct: 9 EIVDYYSSQRDAGSQENIVEMLREVQELYGYIPSEKTRAMAEATGVKQTLLLQLIKLYPS 68 Query: 85 FQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ +P G H + VC C +G ++ E K + G EC Sbjct: 69 FKKAPYG---HCITVCTGARCGDKGSAEVFEAVL-----KAVEARESGAFKIVMKECLKQ 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP +M+ D+Y + P+ + I+ + Sbjct: 121 CKTAPNLMVDSDSYGCVKPDEVASILSNY 149 >gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15] Length = 571 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 20/135 (14%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89 R + +I L Q+ +G++S A + +A+ +++ V E ATFY F + P Sbjct: 42 RHRDRLIEHLHLIQDADGYLSMARLRALASFMNLPMADVYETATFYAHFDVVHDEQTPPP 101 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAP 148 T ++VC + C L G L K L +D + C G C AP Sbjct: 102 AIT---LRVCDSLSCQLAGASAL---------HKTLADGTDPAQVRVVHAPCMGRCDTAP 149 Query: 149 MVMIGKDTYEDLTPE 163 +V +G + T E Sbjct: 150 VVAVGHHHVGNATAE 164 >gi|294499376|ref|YP_003563076.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551] gi|294349313|gb|ADE69642.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551] Length = 126 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RNK+ + L D T+ C G C +AP+ Sbjct: 8 GTKHHVLICNGSSCMRKGGEEATQAIRNKVTELDL----DETVHTTRTRCNGRCKDAPVA 63 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T I+ G Sbjct: 64 IVYPSGDWYKQVTETVAHRIVKEHLAG 90 >gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Cupriavidus metallidurans CH34] Length = 602 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 3/151 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ RY R + ++ +L Q G + + +A L+++ + + E A+FY F Sbjct: 5 IRTILERYRSDRAR--LMDILWDVQHLYGHIPDEVLPQLAAELNLSPLDIRETASFYHLF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + + +C + + G + + + + + + +G E C G Sbjct: 63 HDKPSG-KHRIYLCNSVIAKMNGYQAVHDALERETGVRFGETDPNGMFGLFETPCIGLSD 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P ++I K + L P ++ +II G+ Sbjct: 122 QEPAMLIDKVVFTRLRPGKIADIIAQLKQGR 152 >gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] Length = 570 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 12/138 (8%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97 +I L Q++ +S A I +A + ++ + V E+A+FY F + P ++ Sbjct: 45 LIEYLHLIQDEYKCLSAAHIRALAEEMRLSQVEVYEVASFYDHFDVVKEGEPEPAPLTIR 104 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + CM+ G E L I RN+ + C GAC AP IG Sbjct: 105 VCDSITCMMMGAEALHAGLETGI-----DRNA---VRVVHAPCMGACDVAPAARIGDREV 156 Query: 158 EDLTPERLEEIIDAFSTG 175 + T + L ++++ G Sbjct: 157 GNATVDGLLAMVESGEIG 174 >gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] Length = 566 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 SR VA L + V A+F+ F +P G R HV+VC C + Sbjct: 46 SRTPPAGVARTLGLPAAAVEGPASFFADFS-APRGAR-HVRVCSAAACFAATGGAHVPEV 103 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 + ++ DGT+S + V C G C P ++G + Sbjct: 104 EAALGVPSGSKSPDGTVSLQAVRCLGYCFAGPAALVGDEA 143 >gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] Length = 646 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ V L + +ATFY F + P + VC Sbjct: 38 LLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 96 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C G +L +++ + + E C G C AP ++ Sbjct: 97 LACTAAGASRLCAAVESRL-------GPESGVKLERSPCLGLCERAPATLV 140 >gi|256783975|ref|ZP_05522406.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 261 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ V L + +ATFY F + P + VC Sbjct: 55 LLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 113 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 C G +L +++ + + E C G C AP ++ Sbjct: 114 LACTAAGASRLCAAVESRL-------GPESGVKVERSPCLGLCERAPATLV 157 >gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] Length = 571 Score = 42.7 bits (99), Expect = 0.034, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 14/151 (9%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q++ G++ + + + R+ E+A+F+ ++L P T V +C C L G Sbjct: 10 QQKFGYLPEEELRAFSKRSQIPMYRLHEVASFFPHYRLKPPAT-GTVLICRDLACHLAGA 68 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI- 168 +L++ K R +D + V C G C AP ++I T +L + Sbjct: 69 SRLLQTL------KATARETDERIEVGGVSCLGQCDRAPALLINDQVIWGQTESQLRALT 122 Query: 169 ---IDAFSTGQGDTIRPGP---QIDRISSAP 193 + + G D + GP QID P Sbjct: 123 RDSVHQRTRGVHDELDKGPTGWQIDPYEGQP 153 >gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 42.7 bits (99), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+H+ +CG T C+ GCE++ + +++ ++ L ++ E C G C P+++I Sbjct: 7 RSHIIICGGTGCVSSGCEEVQKALEDELDKQDLTDE----INIVETGCHGLCEKGPVMVI 62 Query: 153 GKDT--YEDLTPERLEEII 169 + Y +L PE +EE++ Sbjct: 63 YPEGIFYCELQPEDMEELV 81 >gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1] gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 563 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 23/136 (16%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V V PP+R +I L Q+ G + + +A+ L++A V E+ATFY F Sbjct: 31 VRAVSGGLPPTR--DLLIEHLHCLQDHYGHLKAEHLVALAHELNLAPAEVYEVATFYHHF 88 Query: 86 QL--------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + P+ R VC C L G + L++ + DG + + Sbjct: 89 DVVHDNAAPPPPITVR----VCDAIGCALSGADDLVQALEAGL--------GDG-VRVQR 135 Query: 138 VECQGACVNAPMVMIG 153 V C G C AP+ ++G Sbjct: 136 VPCVGRCDQAPVAVVG 151 >gi|224696920|emb|CAX51540.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum] Length = 91 Score = 42.4 bits (98), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ +P+G + + +C PC L G E+ E + K+ DG + +E EC GAC Sbjct: 2 YETAPIG-QHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60 Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +AP+ ++ ++ E+++++++ S Sbjct: 61 GDAPVALLNNHRMCSFMSREKIDQLLEELS 90 >gi|307697991|gb|ADN86365.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ PVG + + +C PC L G ++ E + K+ DG + +E EC GAC Sbjct: 2 YETVPVG-QHKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60 Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173 +AP+V++ ++ E+++++++ S Sbjct: 61 GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90 >gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 559 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+VR L + P E + + E++ R + +I L Q++ G +S A Sbjct: 1 MAVRELRPRDRGPKGRELDETAWSDIRELLGE--GERRRDLLIEYLHLIQDRFGCLSAAH 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVC 116 + +A + ++ V E+A+FY F + G +++C + C L G E LI Sbjct: 59 LRALAEEMRLSQAEVYEVASFYDHFDVVREGEEKPAPLTIRICDSISCALAGAEALIGEV 118 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + + C G C AP IG Sbjct: 119 SAGV--------DPAAIRVVRAPCMGRCATAPAARIG 147 >gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa] Length = 107 Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDM 70 + VA +L + Sbjct: 98 MNKVAEVLQV 107 >gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Coprococcus catus GD/7] Length = 594 Score = 42.0 bits (97), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G E LI + + ++ + L ++ + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSETLISLLQEELKKNGLENE----VAIVKTGCHGLCAQGPVMVI 58 Query: 153 GKDT--YEDLTPERLEEII 169 D Y + PE + EI+ Sbjct: 59 YPDATFYSMVKPEDIPEIV 77 >gi|12644506|sp|O87688|CBIW_BACME RecName: Full=Putative 2Fe-2S ferredoxin gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus megaterium] Length = 127 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RNK+ + L T + C G C +AP+ Sbjct: 10 GTKHHVLICNGSSCMRKGGEEATQAIRNKVAELNLDEAVHTTRT-----CNGRCKDAPVA 64 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T + I++ G Sbjct: 65 IVYPSGDWYKQVTEKVAHRIVEEHLAG 91 >gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 571 Score = 41.6 bits (96), Expect = 0.073, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89 R + +I L Q+ G++S + +A+ +++ + E ATFY F + P Sbjct: 42 RHRDRLIEHLHVVQDACGYLSMPHLRALASFMNLPMAAIYETATFYAHFDVIHDEQAPPP 101 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 T ++VC + C L G E L HQ T+ C G C AP+ Sbjct: 102 AIT---LRVCDSLSCQLAGAEAL--------HQALSDGADPATVRVRRAPCMGRCDTAPV 150 Query: 150 VMIGK 154 V +G Sbjct: 151 VEVGH 155 >gi|255019942|ref|ZP_05292016.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] gi|254970601|gb|EET28089.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] Length = 129 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 QE G++ A+ A+ + ++V E+ +FY P G R +++C + C L G Sbjct: 5 QEALGYIDDEALHYAADCTGLTPVQVEELCSFYPLVLRRPAG-RHLLRICDSVACHLAGA 63 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 +L+ + G S C G C AP V++ +P LE+++ Sbjct: 64 PELVRRAEAISGVRLGQVAGAGHYSILPHVCLGLCDRAPAVLVDGRAVGGFSPTALEQLL 123 Query: 170 DAFSTG 175 + G Sbjct: 124 AEWEQG 129 >gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] Length = 564 Score = 41.2 bits (95), Expect = 0.097, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L + Q+ +S A I +A L ++ V E+ATFY F + G V+ Sbjct: 49 LIEFLHQIQDTYHHISAAHIAALARELKLSQTEVYEVATFYHHFDVIKEGESPPPPLTVR 108 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 VC + C + G + LI + + + + ++V C G C AP+ ++G Sbjct: 109 VCDSVTCEIGGAKTLIAELKAVLGE---------GVRVQKVPCVGRCEQAPVAVVG 155 >gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 558 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 14/153 (9%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ + QP + + V ++ P R + +I L + Q+ G + + +A Sbjct: 7 LSRKPSQPKGRQLEDAALTEVQALLGEEP--RRRDLLIEHLHKIQDAYGCLEARRLRALA 64 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 + ++ V E+A+FY F + G V+VC + C L+G + L + + Sbjct: 65 EEMRLSQAEVYEVASFYHHFDIVREGEVKPAPVTVRVCDSITCSLKGADALAASLESGVD 124 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + ++V C G C AP +GK Sbjct: 125 PS--------KVRIQKVPCIGRCAAAPAAQVGK 149 >gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42] gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Acidovorax sp. JS42] Length = 640 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 17/119 (14%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH------ 95 +I L R + G + + +A +++ +V E+A+FY F++ R H Sbjct: 62 LIEYLHRLNDHFGVLHDRHLVALARQMNLPMAQVYEVASFYHHFEI----VRGHDAQAPR 117 Query: 96 --VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V+VC + C + G +L+E + L G + V C G C AP+ ++ Sbjct: 118 LVVRVCDSLSCTMAGARELLEALPAR-----LQAAGQGDVQVVAVPCVGRCEQAPVAVV 171 >gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 569 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + HV VCG T C GC+ ++ + I + L T+ C G C P++ + Sbjct: 30 KYHVLVCGGTGCHSVGCQNTLQALQKAIDSQGLQD----TVKLVVTGCMGTCEMGPVITV 85 Query: 153 GKDTYE--DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 D Y + PE EE++ + ++ G +DR+ A G Sbjct: 86 FPDGYYYCRVQPEDAEELVTSH-------LKEGKYVDRLCYHTADG 124 >gi|295400339|ref|ZP_06810318.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111135|ref|YP_003989451.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp. Y4.1MC1] gi|294977614|gb|EFG53213.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216236|gb|ADP74840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp. Y4.1MC1] Length = 122 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 25/122 (20%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + HV +C CM +G E++ R +I L DG + C G C +A + Sbjct: 7 IGMKHHVLICNGGSCMRKGGEEVTLAIREEIASLEL----DGIVHTTRTRCNGRCQDACV 62 Query: 150 VMIGKDT--YEDLTPER--------------LEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 V++ + Y +TPE+ LEE+I G+ + P P S+AP Sbjct: 63 VIVYPEGVWYNGMTPEKGREVVRRHLRDGEWLEEMITYRYEGRQGLVMPNP-----SAAP 117 Query: 194 AG 195 G Sbjct: 118 LG 119 >gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 616 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 HV VC T C E++I R +I + L T+ + C G C P+V++ Sbjct: 34 HVMVCAGTGCTSSNSEEIISRLRVQIEKHGLGE----TVKVVQTGCLGLCAKGPIVIVHP 89 Query: 155 D--TYEDLTPERLEEIIDAFSTG 175 D Y +TPE + EI+++ G Sbjct: 90 DDCMYTMVTPEDVSEIVESHLVG 112 >gi|325001506|ref|ZP_08122618.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1] Length = 118 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 + EGW+S A+ VA L + V +ATFY F + P R V VC C Sbjct: 63 HDAEGWLSEGALNHVARTLQVPPAEVYGVATFYAMFSVEPRAPRV-VHVCDDVAC 116 >gi|308068791|ref|YP_003870396.1| ferredoxin, 2Fe-2S [Paenibacillus polymyxa E681] gi|305858070|gb|ADM69858.1| Ferredoxin, 2Fe-2S (AaFd4) [Paenibacillus polymyxa E681] Length = 108 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+L P+ + HV VC CM E++ + R++I ++ N++ + C G C Sbjct: 4 FELEPM--KHHVLVCNGGTCMRHEGEEVTQAIRDEIRKQ----NAEAYIHTTRTRCNGRC 57 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176 +A +V++ D Y +TP+ +++ TG+ Sbjct: 58 HDAAVVIVYPQGDWYGQMTPDSGTQLVQKLVTGE 91 >gi|294678553|ref|YP_003579168.1| NAD-dependent formate dehydrogenase subunit gamma [Rhodobacter capsulatus SB 1003] gi|294477373|gb|ADE86761.1| NAD-dependent formate dehydrogenase, gamma subunit [Rhodobacter capsulatus SB 1003] Length = 150 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A++P+L Q G++ A +A L + V + FY F+ +P G R +++ Sbjct: 18 EGALLPILHDVQAAFGFIPEDAYAPIAADLGLTRAEVAGVVGFYHDFRKAPAG-RHVIKL 76 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVNAPMVMI 152 C C G ++ + ++ R D + ++ E V C G C AP M+ Sbjct: 77 CRAEACQAMG----MDAVQARLESALGLRLGDSSEAVTLEAVYCLGLCACAPAAMV 128 >gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 562 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSW 135 E+A TQ + R + VC + C+ G +KL+ R+++ Q+P + +DG Sbjct: 6 ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLEQQPQISARADG---- 61 Query: 136 EEVECQGACVNAPMVMI 152 V C G C P+VM+ Sbjct: 62 --VGCMGLCSKGPLVMV 76 >gi|326386801|ref|ZP_08208421.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208720|gb|EGD59517.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 142 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q + G VS A +A L+++ V + +FY F+ +P R V++ Sbjct: 18 EGPLLPILHDVQTEFGHVSPEAEGQIALALNLSRAEVHGVVSFYHDFREAP-DPRPCVEL 76 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C RG E L+ + + + V C G C P +G+ + Sbjct: 77 CRAEACQARGVEALVAAAEDAAGSR---------VRLATVYCLGLCSVGPSARVGERLHA 127 Query: 159 DLTPERLEEIIDA 171 L ++L ++I+A Sbjct: 128 RLDADKLVKVIEA 140 >gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 530 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSW 135 E+A TQ + R + VC + C+ G +KL+ R+++ Q+P + +DG Sbjct: 6 ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLAQQPQISARADG---- 61 Query: 136 EEVECQGACVNAPMVMI 152 V C G C P+VM+ Sbjct: 62 --VGCMGLCSKGPLVMV 76 >gi|237667145|ref|ZP_04527129.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655493|gb|EEP53049.1| putative iron hydrogenase, gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 94 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++ +Y +R +I ++ Q++ ++ + +A L ++ ++ +ATFY F Sbjct: 4 IDSILEKYDYNR--QLLIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENF 61 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 L P G +++C T C +R ++E Sbjct: 62 SLKPKGKYV-IKICNGTACHVRKSIPILE 89 >gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 585 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 29/153 (18%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGT 92 R + +I L Q++ G +S + +A+ + M V E ATFY F + PV Sbjct: 46 RERDELIEHLHALQDRFGHLSLRHLRALADWMRMPMAEVYETATFYAHFDVVREDEPVPP 105 Query: 93 RAHVQVCGTTPCMLRG-------CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 V+VC + PC L G + ++ R ++ + P C G C Sbjct: 106 ALTVRVCDSLPCQLAGAQALRAALDAALDPARIRVLRAP---------------CMGRCD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AP+ +G+ TP ++ A + G D Sbjct: 151 QAPVAQLGRRHLSRATP---AAVLAALARGALD 180 >gi|294775627|ref|ZP_06741136.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450569|gb|EFG19060.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 80 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT F + P G + + VC T C LRG EKL E + + + DG + Sbjct: 4 MVTFYTFFAMIPKG-KHPISVCMGTVCRLRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 62 Query: 138 VECQGACVNAPMVMI 152 + C GA P++MI Sbjct: 63 LWCVGAYGLLPVIMI 77 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 39.3 bits (90), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA- 94 SR +I L + Q++ G ++ + + +A + +A V E+A+FY F + G A Sbjct: 45 SRQADLLIEHLHKIQDKFGHLASSHLAALAQEMRLAQTEVYEVASFYHHFDIVKEGDAAP 104 Query: 95 ---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V+VC C + G + L+ KI K + + C G C AP+ + Sbjct: 105 QALTVRVCDGLSCEMAGAKDLLAKL-PKILGKEVRVIA--------APCVGRCEQAPVAV 155 Query: 152 IGKDTYEDLTPERLEEIID 170 +G++ + T E ++ ++ Sbjct: 156 VGQNPVINATCEAVQTAVE 174 >gi|300860741|ref|ZP_07106828.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11] gi|295112906|emb|CBL31543.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Enterococcus sp. 7L76] gi|300849780|gb|EFK77530.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11] gi|315145700|gb|EFT89716.1| NAD-dependent formate dehydrogenase, gamma subunit family protein [Enterococcus faecalis TX2141] gi|315160213|gb|EFU04230.1| NAD-dependent formate dehydrogenase, gamma subunit family protein [Enterococcus faecalis TX0645] Length = 107 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 P R + +I L + +EG++ + ++VA L + RV EI +FY + P + Sbjct: 20 PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEP-QAKY 76 Query: 95 HVQVCGTTPCMLRGCEKLIEV 115 +++C +TPC G + EV Sbjct: 77 VLKICNSTPCHYTGGAMVAEV 97 >gi|307331427|ref|ZP_07610545.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces violaceusniger Tu 4113] gi|306882926|gb|EFN13994.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces violaceusniger Tu 4113] Length = 319 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTP 103 P L ++ GW+S ++ + L + +ATFY F + P V VC Sbjct: 58 PGLHALNDRVGWISEGGLDYLCRRLTVPPAEGYGVATFYAMFAVKPRPATV-VHVCTDLA 116 Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C RG ++ + P G + W+ C G C AP + Sbjct: 117 CAARGSARVCAELERDL--GPAGSAGSGAV-WQPSPCLGLCERAPAAL 161 >gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 569 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 13/106 (12%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + HV VCG T C+ GC+ ++ + I L T+ C G C P++ + Sbjct: 30 KYHVLVCGGTGCISIGCQNTLQAMQKAIEDHGLQE----TVKLVVTGCMGTCEMGPVITV 85 Query: 153 GKDTYE--DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 + Y + PE +EEI+ + ++ G ++R+ A G Sbjct: 86 FPEGYYYCRVKPEDVEEIVTSH-------LKEGKFVERLCYHAADG 124 >gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [Nostoc sp. PCC 7120] gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120] Length = 188 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P A + VC + C+ RG + L+ +++ + R ++ E CQ C +AP Sbjct: 96 PAPPPAKIMVCQKSGCVKRGGDGLL----SELEKTLCDRGLLDKVTIEHTGCQKRCSSAP 151 Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTG 175 ++M+GK Y+ + PE + +++ + TG Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTG 180 >gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 626 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ + L + +ATFY F + P V VC Sbjct: 56 LLPGLHAINDRVGWISEGALDYLCRRLTVPPAEGYGVATFYAMFSVRPRPATV-VHVCTD 114 Query: 102 TPCMLRGCEKLIEVCRN-KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C RG EVC + G + W+ C G C AP + Sbjct: 115 LACAARGSA---EVCAGLERDLGAAGSARAGGVVWQPSPCLGLCERAPAAL 162 >gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina] Length = 610 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L+R Q++ +V AA+E ++ LD+ +V FY P G ++ Sbjct: 31 LIRVQQRFSYVPDAAVEALSVALDVTRTQVRAAIAFYAFLHDRPRGA-FEIRFSDNITDR 89 Query: 106 LRGCEKLIEVCRNKIHQKPLHR------NSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + G +LI + ++ L DG S C G C P +++ + Sbjct: 90 MLGSRRLIRLLIERLGLTGLPAWGRDLVRPDGRASVGLASCTGMCDQGPALLVNGQAVTN 149 Query: 160 LTPERLEEIIDAFSTG 175 L +R++ I D G Sbjct: 150 LDAQRVDRIADLVQEG 165 >gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium enrichment culture clone BF] Length = 597 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C+ G +K+ E +++ + +N D + E C G C P++++ Sbjct: 5 RAHVLVCGGTGCVSSGSKKIQEALSDELAK----QNLDKEIKVVETGCHGFCEMGPILIV 60 Query: 153 GKDT--YEDLTPERLEEII 169 + Y +T E ++EI+ Sbjct: 61 YPEGTFYCRVTVEDVQEIV 79 >gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 621 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + V+VC T C+ G ++ E + ++ L D E C G C P+V+ Sbjct: 24 SRVRVCAGTGCLAGGSARVKEAFEVEAARRGLALGVD--FRAETTGCHGFCEEGPLVVAE 81 Query: 153 -GKDTYEDLTPERLEEIIDAFSTG 175 G Y +TP + EI+DA ++G Sbjct: 82 PGGILYRRVTPSDVPEILDALASG 105 >gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 614 Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%) Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG------KDTYEDLTPERLEEIIDAFS 173 IHQ+ RN + + EV C G C P++M+ K Y D+TPE++ I+ A + Sbjct: 46 IHQEIAERNLENAIEVSEVGCMGLCHAEPVIMLADEATGEKLIYGDVTPEQVPAILAAGT 105 Query: 174 TGQGDTIRPG 183 + +I PG Sbjct: 106 S----SIAPG 111 >gi|239826984|ref|YP_002949608.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70] gi|239807277|gb|ACS24342.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70] Length = 132 Score = 38.5 bits (88), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + HV +C CM +G E++ R +I L DG + C G C +A + Sbjct: 7 IGMKHHVLICNGGSCMRKGGEEVTLAIREEIAMLEL----DGIVHTTRTRCNGRCQDACV 62 Query: 150 VMIGKDT--YEDLTPERLEEII 169 V++ + Y +TPE+ E++ Sbjct: 63 VIVYPEGVWYNGVTPEKARELV 84 >gi|331092182|ref|ZP_08341012.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401954|gb|EGG81528.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium 2_1_46FAA] Length = 157 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++ L Q+ G + A + I+ M + +I + Y L+ + + V Sbjct: 28 QETLVQFLRETQDIFGCIPADAKMQIGEIMGMKPSLIDKIISMYPS--LTAEKFQTEIIV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C + +K++ + + +P DG C C P +MIG Y Sbjct: 86 CSGASCSSKNAQKVLSEIQTLLQIRPGQVTKDGRYKLTAKPCMKQCKKGPNLMIGSTIYH 145 Query: 159 DLTPERLEEII 169 ++ E+L+ ++ Sbjct: 146 NIDSEKLKTLL 156 >gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Mycobacterium vanbaalenii PYR-1] Length = 603 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 7/153 (4%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RY +R ++ +L Q G + + VA L+ + ++E A+FY F +P G Sbjct: 13 RYDGTR----LLDILWDIQHLFGHIPDEHLPQVATALNRTVLDIVETASFYHFFHTTPSG 68 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + + T + G + + + + + + G E C G P ++ Sbjct: 69 -RHRIYLSNTVIAKMNGYQAVHDALELETGARFGGTDEAGMFGLFETACIGLSDQEPAML 127 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ--GDTIRP 182 + + LTP + +I+ G+ D + P Sbjct: 128 LDGVVFTRLTPGTVADIVAQLKAGRVAADIVNP 160 >gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 596 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + + H+ VCG T C+ ++L E + + ++ L LS C G C P+ Sbjct: 1 MAVKMHILVCGGTGCISSQSDRLAEALKEALAKRGLAEEVKVVLSG----CFGFCEQGPI 56 Query: 150 VMIGKDT--YEDLTPERLEEII 169 V + D Y +TPE +EI+ Sbjct: 57 VKVAPDNTFYVKVTPEDADEIV 78 >gi|167761209|ref|ZP_02433336.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704] gi|167660875|gb|EDS05005.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704] Length = 155 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANI--LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 +I +L R QE G+VS+ E VA + ++ Y+ A L R ++VC Sbjct: 25 IIAMLTRIQETVGYVSKDVQEEVARLTGVNRGYV----AAIIKNLPHLHAQAFRHEIRVC 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + C RG L++ + + KP DG C C++ P + I YE+ Sbjct: 81 ISDRCKARGGSDLLKKLQKLLKIKPGQVTKDGVFLLNTEYCMHNCMHGPNIKIDGRIYEN 140 Query: 160 LTPERLEEIIDAF 172 + +L ++++ Sbjct: 141 VQISQLPQLLEKL 153 >gi|220931056|ref|YP_002507964.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168] gi|219992366|gb|ACL68969.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168] Length = 80 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+VC T C L G +I+ +N L N + + V C +C P VM+ Sbjct: 7 VEVCVGTSCHLMGSPAIIDYLKN------LPDNIKDKIEIKHVSCMNSCDRGPRVMVNDT 60 Query: 156 TYEDLTPERLEEII 169 + TPER++E I Sbjct: 61 VIYNATPERVKEAI 74 >gi|297190827|ref|ZP_06908225.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] gi|297150630|gb|EFH30697.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] Length = 176 Score = 38.1 bits (87), Expect = 0.78, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ + L + +ATFY+ F + P + + VC Sbjct: 57 LLPALHAVNDRVGWLSEGALDYICRRLTVPPAEAYGVATFYSMFSVRPRPAKV-LHVCTD 115 Query: 102 TPCMLRG 108 C RG Sbjct: 116 LACAARG 122 >gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] Length = 597 Score = 38.1 bits (87), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G ++LIE N+I + LH +++ + + C G C P V+I Sbjct: 5 RSHVLVCGGTGCTSSGAQQLIEALNNEIER--LHLSNE--VKVVQTGCLGLCERGPNVVI 60 >gi|22212574|dbj|BAC07503.1| NADH-ubiquinone oxidoreductase 24kDa subunit [Phanerochaete chrysosporium] Length = 56 Score = 38.1 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%) Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 DLTPE ++++DAF +G+ +PGPQ R +S + GLT+L Sbjct: 1 DLTPETTKKVLDAFK--KGEKPKPGPQSGRHTSENSAGLTAL 40 >gi|150002992|ref|YP_001297736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC 8482] gi|149931416|gb|ABR38114.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC 8482] Length = 77 Score = 38.1 bits (87), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT F + P G + + VC T C +RG EKL E + + + DG + Sbjct: 1 MVTFYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 59 Query: 138 VECQGACVNAPMVMI 152 + C GA P++MI Sbjct: 60 LWCVGAYGLPPVIMI 74 >gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens PCA] gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens PCA] gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 570 Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC TPC+ G +++ R + + L D + C G C P+V + Sbjct: 21 RCRIMVCAGTPCLSAGALAVLDALRQAVEESRL----DAEIEAVSTGCMGPCSRGPLVKV 76 Query: 153 ---GKD--TYEDLTPERLEEIIDAFSTGQ 176 GK YE +TPE +I+ + G+ Sbjct: 77 AVQGKPEIVYERVTPELARQILYSVVKGR 105 >gi|219848576|ref|YP_002463009.1| hypothetical protein Cagg_1672 [Chloroflexus aggregans DSM 9485] gi|219542835|gb|ACL24573.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 80 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 113 IEVCRNKIHQKP--------LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164 + VCR +P L N G L E++C AC + P VMI D + +TP++ Sbjct: 6 LTVCRLCARSRPDLWQTLARLRANHPGELRVVELDCMAACDDVPAVMIDFDYFPRVTPQQ 65 Query: 165 LEEII 169 L E++ Sbjct: 66 LIELV 70 >gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 613 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 +FQ + + + VCG T C+ GC+++++ K+ ++ L D E C G Sbjct: 13 EFQENLENLKTRILVCGGTGCISCGCKQILD----KLKEELLINFLDDKFRLIETGCHGL 68 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIID 170 C P+V+I K Y ++ E ++E+++ Sbjct: 69 CEKGPIVIIYPEKTFYCNVQVEDIKELVE 97 >gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 572 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 66 NILDMAYIRVLEIATFYTQFQLSPV-GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 NI +A +R + PV G H VCG T C+ GC+ + ++I ++ Sbjct: 2 NITGLAELRAKAHEALRLRANERPVDGYEYHALVCGGTGCVSSGCKSVKSALVDEIRKQG 61 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169 L + + E C G C PM+ + D YE +T +E ++ Sbjct: 62 L----EAKVRVIETGCLGPCNLGPMITVYPDGIFYEKVTAGDVESVV 104 >gi|226939219|ref|YP_002794290.1| hypothetical protein LHK_00286 [Laribacter hongkongensis HLHK9] gi|226714143|gb|ACO73281.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Laribacter hongkongensis HLHK9] Length = 288 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-VQ 97 + A++PLL Q Q G++ AA+ +A L + + + +FY F+ +P RAH ++ Sbjct: 21 RGALLPLLHAIQAQFGYIPDAAVPRLAQALRQSRADIDGVISFYRDFRRTP--PRAHTLR 78 Query: 98 VCGTTPCMLRGCEKLIEV 115 +C C G + L + Sbjct: 79 LCRAESCQAMGADTLAHL 96 >gi|31747591|gb|AAO38265.1| probable Fe-hydrogenase gamma subunit [Leptospirillum ferrooxidans] Length = 73 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 L++ + ++ +P D + E V C G+C APM M+ Y L+P+++ +I Sbjct: 2 LVDKVKEELKIEPGENTEDMLFTLEPVSCLGSCALAPMAMVTDTAYGKLSPDKMLGLI 59 >gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 597 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C+ G KL E + ++ ++ L D + + C G C P++++ Sbjct: 5 RSHVLVCGGTGCVSSGSAKLQEALQKELGKQGL----DKEILLVQTGCHGMCEAGPIMVV 60 Query: 153 GKDT--YEDLTPERLEEIID 170 + Y + PE EI++ Sbjct: 61 YPEGTFYTHVKPEDAAEIVE 80 >gi|212640009|ref|YP_002316529.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1] gi|212561489|gb|ACJ34544.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1] Length = 123 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C CM +G E++ + R++I + LH + T + C G C +A +V Sbjct: 11 GTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHTHVHTTRT----RCNGRCEDACVV 66 Query: 151 MI 152 ++ Sbjct: 67 IV 68 >gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 607 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ + L + +ATFY F + P + VC Sbjct: 55 LLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVKPRPATV-LHVCTD 113 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C G +L ++ +S E C G C AP + Sbjct: 114 LACAASGAPELCAGIEARL-------GPGSGVSVERSPCLGLCERAPAAL 156 >gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus] Length = 604 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ +I +L Q G + + +A+ L+++ + +LE A+FY F P G + + + Sbjct: 16 RTRLIDILWDVQHLYGHIPDEVLPQLADELNLSPLDILETASFYHFFHRKPSG-KYRIYL 74 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 T + G + + + + + + G E C G P ++I + Sbjct: 75 SDTVIAKMNGYQAVHDSLERETGARFGGTDKTGMFGLFETPCIGLSDQEPAMLIDNVVFT 134 Query: 159 DLTPERLEEIIDAFSTGQ 176 L P + +II G+ Sbjct: 135 RLRPGTIVDIITQLRQGR 152 >gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Geobacter metallireducens GS-15] Length = 569 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC TPC+ G + +++ R + + L + S C G C P+V + Sbjct: 21 RCRIMVCAGTPCLSAGAQTVLDSLRKALAESRLDAEIEAVASG----CMGPCSRGPLVKV 76 Query: 153 ---GKD--TYEDLTPERLEEIIDAFSTGQ 176 GK +E +TPE +I+ + + G+ Sbjct: 77 RQQGKKEIIFERVTPELARQILLSLAKGR 105 >gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] Length = 538 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC +T C+ ++++ ++ Q+ L + ++V C G C P+V Sbjct: 20 VRYRIMVCSSTGCLSSRSDEILAALEAEVKQRGLENE----VLVKKVGCLGLCAAGPIVS 75 Query: 152 IGKD--TYEDLTPERLEEIID 170 I D Y+++TPE + I+D Sbjct: 76 IQPDGILYKEMTPEDVPAILD 96 >gi|75910163|ref|YP_324459.1| hypothetical protein Ava_3959 [Anabaena variabilis ATCC 29413] gi|75703888|gb|ABA23564.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 188 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 Q P A + VC + C+ RG E L+ +++ + R ++ E CQ C Sbjct: 93 QCLPSPPPAKIMVCQKSGCVKRGGEGLL----SELEKTLCDRGLLDKVTIEHTGCQKRCS 148 Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDAFST 174 +AP ++M+GK Y+ + PE + +++ + T Sbjct: 149 SAPNCVLMLGKKKYKKIHPEAIASLLENYLT 179 >gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 176 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 +FQ + + + VCG T C+ GC++++ +K+ ++ L D E C G Sbjct: 13 EFQENLENLKTRILVCGGTGCISCGCKQIL----DKLKEELLINFLDDKFRLIETGCHGL 68 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIID 170 C P+V+I K Y ++ E ++E+++ Sbjct: 69 CEKGPIVIIYPEKTFYCNVQVEDIKELVE 97 >gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] Length = 565 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 14/128 (10%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 ++IPLL Q + GW+ R +E +A + + +FY F +P V+VC Sbjct: 22 SLIPLLNAIQARCGWLPREELEALARQQKRPLYEIEGLVSFYPHFLTAPP-KDVTVRVCR 80 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C L+G E + + + E+ C G C AP + + Sbjct: 81 DLACWLKGAEGPAAALTAQYAEAE-------DVEVLEISCPGRCDMAPAATVNEK----- 128 Query: 161 TPERLEEI 168 P RLE++ Sbjct: 129 -PVRLEDV 135 >gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 641 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 27/172 (15%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ + L + +ATFY F + P + VC Sbjct: 55 LLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 113 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C G +L +++ + E C G C AP + + Sbjct: 114 LACTAAGAAELCADVESRL-------TPGSGVQVERSACLGLCERAPAALAIRAG----- 161 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 E AF D RPGP+ + P G N +RG+ + Sbjct: 162 ----ETARPAFE----DEARPGPEGGPGAQPPGEG------NGKGRRGRTTQ 199 >gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] Length = 657 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97 +I L R + G + + +A +++ V E+A+FY F++ R ++ Sbjct: 41 LIEYLHRINDHFGVLHDRHLVALAKQMNLPMAEVYEVASFYHHFEIVRGEGAQAPRLVLR 100 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 VC + C + G +L+ ++ PL + + V C G C AP+ ++ Sbjct: 101 VCDSLSCSMAGARELLAALPERLRAMPLG-GGQCDVQVQAVPCVGRCEQAPVAVV 154 >gi|297831032|ref|XP_002883398.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329238|gb|EFH59657.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 103 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEV 63 V E++S YP + Q AVIPLL AQ+Q GW+ +A+ V Sbjct: 1 VKEILSYYPSNYKQFAVIPLLDLAQQQHGGWLPVSAMNV 39 >gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] Length = 626 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 18/149 (12%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++I P R +I L R +Q + + +A ++++ V E+ATFY F Sbjct: 44 VQQLIGAGPHRR--DLLIEHLHRINDQWHGLHERHLVALARLMNLPMAEVYEVATFYHHF 101 Query: 86 QL-----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 ++ P V+VC + C L G L++ + + + C Sbjct: 102 EVLRDDAQPAAIT--VRVCDSLSCSLAGASDLLQRLPQLLGAE---------VRVMPTPC 150 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEII 169 G C AP+ ++G+ TP+ + E + Sbjct: 151 VGRCEQAPVAVVGQWPVAHATPDAVRESV 179 >gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 580 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 17/130 (13%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH--------VQVCGT 101 Q++ G ++ + +A L +A V E+ATFY F + H V+VC Sbjct: 57 QDRYGQLAMPHLVALAQELGLAMTEVYEVATFYHHFDVVREDADGHIAPPPALTVRVCEG 116 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C + G + LI+ + P +D + C G C AP V+ G+ + T Sbjct: 117 IACEMAGAQVLID-------KLPAVLGTD--VRVVAAPCIGRCEKAPAVLAGQKPVDGAT 167 Query: 162 PERLEEIIDA 171 E + + A Sbjct: 168 VEAVASCVAA 177 >gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 569 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 23/160 (14%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF---------QLSPVGTRAHVQVCG 100 ++ G ++ + +A+ L ++ V E+ATFY F Q++P V+VC Sbjct: 57 NDRYGQLAMPHLVALASELRLSMTEVYEVATFYHHFDVVREDADGQIAPPPALT-VRVCE 115 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C L G + LI+ + P ++ + C G C AP ++G++ ++ Sbjct: 116 GIACELAGAQALID-------KLPALLGTE--VRVIAAPCIGRCEKAPAALVGQNPVDNA 166 Query: 161 TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 T E + ++A + P P ID + GG L Sbjct: 167 TAETIGTAVEAKAVRHA----PEPHIDYDAYRRDGGYALL 202 >gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] Length = 595 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G ++++ R+++ + L D +S + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSQQIMVKLRDELKGQGL----DQEVSVVQTGCHGLCALGPIMII 58 Query: 153 GKDT--YEDLTPERLEEII 169 D Y + E + EI+ Sbjct: 59 YPDATFYAMVKEEDISEIV 77 >gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] Length = 597 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ VCG T C+ + L + ++ + ++ L LS C G C P+V + Sbjct: 5 KMHILVCGGTGCISSQSDVLAQALKDALKEQGLENEVKVVLSG----CFGFCEQGPIVKV 60 Query: 153 GKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 D Y +TPE EI+ + I G ++DR+ Sbjct: 61 APDNTFYVKVTPEDAGEIV-------AEHIVKGRKVDRL 92 >gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 306 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A+ + L + +ATFY F L P + VC Sbjct: 52 LLPGLHAVNDRVGWISEGALNYLCRRLTVPPAEAYGVATFYAMFSLRPRPATV-LHVCTD 110 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C G L ++ ++ E C G C AP + Sbjct: 111 LACAAAGAGDLCAGVEARL-------GPGSGVAVERSPCLGLCERAPAAL 153 >gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 602 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T + +C C+ G E + +V KI + N T++ E C GAC P+++ Sbjct: 4 TTNTILICAGGACISAGEESVKDVLERKIKE----YNLQDTINIVETGCMGACSLGPIMV 59 Query: 152 IGKDT--YEDLTPERLEEIID 170 I + Y+ LTPE E+I++ Sbjct: 60 IHPEGVYYQKLTPEAAEKIVE 80 >gi|254883634|ref|ZP_05256344.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA] gi|319642295|ref|ZP_07996954.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A] gi|254836427|gb|EET16736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA] gi|317386151|gb|EFV67071.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A] Length = 80 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + T+YT F + P G + + VC T C +RG EKL E + + + DG + Sbjct: 4 MVTYYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 62 Query: 138 VECQGACVNAPMVMI 152 + C GA P++MI Sbjct: 63 LWCVGAYGLPPVIMI 77 >gi|312881026|ref|ZP_07740826.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260] gi|310784317|gb|EFQ24715.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260] Length = 94 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C RG +K +EV R + HR D +S C+GAC P + Sbjct: 15 GERVVLTLCMGSSCFARGNQKNLEVIRQFLKD---HRMED-RVSLVGSRCEGACTQGPNL 70 Query: 151 MIGKDTYEDLTPERLEEIID 170 IG + + E L +++ Sbjct: 71 RIGDRLFPRINQEDLPALLE 90 >gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chromohalobacter salexigens DSM 3043] Length = 595 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 14/134 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-----SPVGTRAHV 96 +I L Q+ +G +S + +A +++ V E ATFY F + SP V Sbjct: 71 LIEHLHTIQDAQGHLSLVMLRALATYMNLPMAAVYETATFYAHFDVVHDDQSPP-PEVTV 129 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC + C L G E L + + + C G C AP+V +G Sbjct: 130 RVCDSLSCRLAGAEALKAKLAAGVDPE--------AVRVVRAPCMGRCDTAPVVEVGHHH 181 Query: 157 YEDLTPERLEEIID 170 T E + +ID Sbjct: 182 VRFATHEGVASVID 195 >gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus str. Bath] gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 610 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +N ++ + R ++ +L Q + VS A + VA L + +V + FY+ Sbjct: 11 INRIVENH--GRDTRQLLSILREVQHEFRQVSPEAQQKVAESLGVCITQVRAVVDFYSFL 68 Query: 86 QLSPVGTRAHVQVCGT-TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 P+G + +++ + T ML E +CR K+ +P DG + C G C Sbjct: 69 STVPLG-KFDIRISDSITDHMLGSREVAAGLCR-KLGIQPGEPRQDGRVGLSFTSCTGLC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEI 168 P +I LT +R ++I Sbjct: 127 DQGPAGLINGYAIPRLTEDRTDQI 150 >gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] Length = 596 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G + + N+I + L D ++ C G C P+V+I Sbjct: 4 RSHVMVCGGTGCTSSGSDNVAAAFVNEIKKAGL----DKEVAVIRTGCFGLCELGPVVVI 59 Query: 153 GKDT--YEDLTPERLEEIID 170 + Y + PE + EI++ Sbjct: 60 YPEGVFYSKMKPEYVPEIVE 79 >gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 602 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P+ T + +C C+ G E + +V KI + L T++ E C GAC P Sbjct: 2 PLATNT-ILICAGGACISAGEESVKDVLERKIKEYNLQE----TVNIVETGCMGACSLGP 56 Query: 149 MVMIGKDT--YEDLTPERLEEIID 170 +++I + Y+ LTPE E+I++ Sbjct: 57 IMVIHPEGVYYQKLTPEAAEKIVE 80 >gi|163846740|ref|YP_001634784.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl] gi|222524552|ref|YP_002569023.1| hypothetical protein Chy400_1276 [Chloroflexus sp. Y-400-fl] gi|163668029|gb|ABY34395.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl] gi|222448431|gb|ACM52697.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 82 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 L G L E++C AC + P VM+ D + +TP++L EI+++ Sbjct: 26 LRTAYSGALCIVELDCMAACDDVPAVMLEYDYFPRVTPQQLIEIVES 72 >gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 541 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++ VC T C+ G E ++ ++++ + N + T+ ++ C G C P+V+I Sbjct: 4 KHNIIVCQGTGCISGGSEAILSALQDEVK----NNNLEDTVLVKQTGCHGFCQRGPLVVI 59 Query: 153 GKDT--YEDLTPERLEEIIDAFSTG 175 + Y +TPE + EI + G Sbjct: 60 EPEELFYSHVTPEDIPEIAQSLKDG 84 >gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] Length = 641 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + +C T C G KL++ RN++ ++ L D + +E C G C +V+ Sbjct: 25 NRLCITICCGTGCRALGSVKLVDAFRNELAKQEL----DNQVDIKETGCHGFCEKGSVVV 80 Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 I Y + PE +I+D TI+ G ++R + + PA G Sbjct: 81 IYPQNICYFHVKPEDAADIVDK-------TIKNGALVERLLYTDPATG 121 >gi|163784146|ref|ZP_02179087.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] gi|159880590|gb|EDP74153.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] Length = 112 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP L QE + AI ++ L + + I +FY F+ + H+++ Sbjct: 25 EQAIIPSLHTIQETYRDIPDEAIRELSEYLQVPEADIEGIVSFYDMFRFEK-KAKNHIRL 83 Query: 99 CGTTPCMLRGCEKLIEV 115 C PC L G K +++ Sbjct: 84 CRNLPCHLAGSRKFLKM 100 >gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 624 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C T C+ G K+ + +++I + L +GT+S + CQG C P+V+I + Sbjct: 34 ITICCGTGCLAYGASKIGQSFKDEIKNQGL----EGTVSVKFTGCQGFCERGPLVVIRPE 89 Query: 156 T--YEDLTPERLEEII 169 Y+ + PE + I+ Sbjct: 90 NILYQRVKPEDVSRIV 105 >gi|295704477|ref|YP_003597552.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319] gi|294802136|gb|ADF39202.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319] Length = 130 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ HV +C + C G E++ + R++I + L D + C G C + +V+ Sbjct: 9 TKHHVLICNGSSCNRFGAEEVTQAIRSEIANQEL----DPYIHTTRTRCNGRCHDKCVVI 64 Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 D Y+D+ P+ +E+I++ Q P +++IS Sbjct: 65 SYPDGIWYKDVKPQDAQELINSLKKDQ-------PFVEKIS 98 >gi|226312181|ref|YP_002772075.1| 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599] gi|226095129|dbj|BAH43571.1| putative 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599] Length = 125 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ HV +C CM +G E++ R I + L D + C G C +A +++ Sbjct: 9 TKHHVLICNGGSCMRKGGEEVTVAIREAITESGL----DDYVHTTRTRCNGRCEDACVMI 64 Query: 152 IGKDT--YEDLTPERLEEII-DAFSTGQ 176 + + YE++TPE ++++ + F G+ Sbjct: 65 VYPEGIWYENVTPEDAQKLVEEHFQNGR 92 >gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas sp. 3As] Length = 597 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP S + +E V ++I P R +I L +Q + + +A ++++ Sbjct: 35 QPESQALAE-----VQQLIGAGPHRR--DLLIEHLHLINDQWHGLHERHLVALARLMNLP 87 Query: 72 YIRVLEIATFYTQFQL-----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 V E+ATFY F++ P V+VC + C L G L++ + + Sbjct: 88 MAEVYEVATFYHHFEVLRDDAQPAAIT--VRVCDSLSCSLAGANDLLQRLPQLLGAE--- 142 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + C G C AP+ ++G+ TP+ + E + Sbjct: 143 ------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDTVRESV 179 >gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 595 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +++E + +I + L +S + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSLQIMETLKAEIDKNGLSEE----VSVVQTGCHGLCALGPIMII 58 Query: 153 GKDT--YEDLTPERLEEII 169 D Y + E + EI+ Sbjct: 59 YPDATFYAMVKNEDIPEIV 77 >gi|317127563|ref|YP_004093845.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM 2522] gi|315472511|gb|ADU29114.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM 2522] Length = 133 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T H+ +C CM G E+L++ RN+I + +H+ + C G C + +++ Sbjct: 9 TEHHLLICNGGSCMKAGAEELVQAVRNEIGKMDVHKR----VHTSRTLCNGRCHDKCVLI 64 Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQ 176 D Y+ +T +I++ TG+ Sbjct: 65 SYPDGYWYKGMTSADASNLIESLLTGK 91 >gi|52080317|ref|YP_079108.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580] gi|52785692|ref|YP_091521.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus licheniformis ATCC 14580] gi|52003528|gb|AAU23470.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580] gi|52348194|gb|AAU40828.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus licheniformis ATCC 14580] Length = 128 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VM 151 + H+ +C + C G E+L +V R +I + L D + C G C + + + Sbjct: 10 KHHIFICNGSSCNRAGAEELTQVIRQEISDREL----DDFIHTTRTRCNGRCQDKCVAIH 65 Query: 152 IGKDT-YEDLTPERLEEIIDAFSTGQ-----GDTIRPGPQIDRISSAPAG 195 + T Y DL PE + +ID+ T + + G + +R S +G Sbjct: 66 YPRGTWYRDLKPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVISG 115 >gi|328951489|ref|YP_004368824.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884] gi|328451813|gb|AEB12714.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884] Length = 105 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMV 150 TRAH+ +C C RG + + + + ++ L + + GTL E C GAC P++ Sbjct: 8 TRAHLLLCTGPRCRARGADTVFRYLWDALEREGLAYYKTGGTLRLTESSCLGACCCGPIL 67 Query: 151 M 151 + Sbjct: 68 L 68 >gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 607 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++P L ++ GW+S A++ + L + +ATFY+ F + P + VC Sbjct: 55 LLPGLHAVNDRIGWISEGALDYLCRRLTVPPAEAYGVATFYSMFAVKPRPATV-LHVCTD 113 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C G +L ++ + E C G C AP + Sbjct: 114 LACASAGAAELCAGVEARL-------GPGSGVGVERGPCLGLCERAPAAL 156 >gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] Length = 631 Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C G +K++E + +I++ L +++ C G C P+V I D Sbjct: 43 ILVCGGTGCKSAGSDKIVENLKEEINKLGLQEEVKVSITG----CFGFCEKGPIVKINPD 98 Query: 156 T--YEDLTPERLEEI 168 Y +TPE +EI Sbjct: 99 NVFYVKVTPEDAKEI 113 >gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] Length = 688 Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R VQVC T C LRG + ++ I ++ L D S+ C C + P V I Sbjct: 591 RLRVQVCLGTSCHLRGAQDILTGLLGHIAEQGLTNAVDVRASF----CHEKCADGPTVQI 646 Query: 153 GKDTYEDLTPERLEEIIDA 171 D T E + +DA Sbjct: 647 NGDVMTHCTLESVIAALDA 665 >gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] Length = 626 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R HV VCG T C G +K+IE K+H++ + + + + C G C P++++ Sbjct: 34 RKHVLVCGGTGCTSSGSKKIIE----KLHEEIRKNSLENEIGVVKTGCFGLCALGPIMIV 89 >gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] Length = 561 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 18/148 (12%) Query: 34 PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL------ 87 P R + +I L Q++ G++S A + +A L + V E+A+FY F L Sbjct: 40 PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQAEVWEVASFYAHFDLVKEDEL 99 Query: 88 -SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P T ++VC + C + + C G C Sbjct: 100 PPPALT---IRVCESLSCE--------LAGAEALLAALEEGLDPAEVRVLRAPCMGRCDT 148 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++ +G + TPE ++A T Sbjct: 149 APVLELGHRHIDHATPETARAAVEAGET 176 >gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 626 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + VC T C +G K+ RN + Q L + D ++ C G C + P+ Sbjct: 28 IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 V I + Y ++ PE + EI+D T+ G I+R+ Sbjct: 88 VKIMPYRFFYSNVAPEDVPEIVD-------RTVLKGEPIERL 122 >gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 626 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + VC T C +G K+ RN + Q L + D ++ C G C + P+ Sbjct: 28 IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 V I + Y ++ PE + EI+D T+ G I+R+ Sbjct: 88 VKIMPYRFFYSNVVPEDVPEIVD-------RTVLKGEPIERL 122 >gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191] gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191] Length = 620 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH---RNSDGTLS--WEEVECQGACVNAPMV 150 + VCG T C+ G +++E + ++ K L+ + +DG + CQG C P+V Sbjct: 24 IIVCGGTGCIAGGSLEVLEAFKKELSAKGLNVCTQITDGCRGTYLSKSGCQGFCAAGPLV 83 Query: 151 MIGKDTYEDLTPERLEEIID 170 +G Y + + EI++ Sbjct: 84 SVGDIFYTKVKESDVSEIVE 103 >gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 626 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + VC T C +G K+ RN + Q L + D ++ C G C + P+ Sbjct: 28 IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 V I + Y ++ PE + EI+D T+ G I+R+ Sbjct: 88 VKIMPYRFFYSNVVPEDVPEIVD-------RTVLKGEPIERL 122 >gi|319645903|ref|ZP_08000133.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2] gi|317391653|gb|EFV72450.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2] Length = 128 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VM 151 + H+ +C T C G E+L +V +I ++ L D + C G C + + + Sbjct: 10 KHHIFICNGTSCNRAGAEELTQVILQEISEREL----DDVIHTTRTRCNGRCQDKCVAIH 65 Query: 152 IGKDT-YEDLTPERLEEIIDAFSTGQ-----GDTIRPGPQIDRISSAPAG 195 + T Y DL PE + +ID+ T + + G + +R S +G Sbjct: 66 YPRGTWYRDLIPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVISG 115 >gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +CG T C GC+++ ++K +++ N + C G C P+V++ Sbjct: 5 RSHVLICGGTGCSSSGCQQV----QDKFNEELDKHNLSNEVKLIITGCHGLCELGPIVIV 60 Query: 153 GKD--TYEDLTPERLEEIID 170 + +Y ++ E + EI++ Sbjct: 61 YPEGTSYFTVSAEDVSEIVE 80 >gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8] Length = 626 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + VC T C +G K+ RN + Q L + D ++ C G C + P+ Sbjct: 28 IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 V I + Y ++ PE + EI+D T+ G I+R+ Sbjct: 88 VKIMPYRFFYSNVAPEDVPEIVD-------RTVLKGEPIERL 122 >gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 569 Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 19/131 (14%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF---------QLSPVGTRAHVQVCG 100 ++ G ++ + +A+ L ++ V E+ATFY F Q++P V+VC Sbjct: 57 NDRYGQLAMPHLVALASELRLSMTEVYEVATFYHHFDVVREDADGQIAPPPALT-VRVCE 115 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C L G + LI+ + P ++ + C G C AP ++G++ + Sbjct: 116 GIACELAGAQALID-------KLPALLGTE--VRVVAAPCIGRCEKAPAALVGQNPVDTA 166 Query: 161 TPERLEEIIDA 171 T E ++ + A Sbjct: 167 TAEAIDAAVQA 177 >gi|89899956|ref|YP_522427.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118] gi|89344693|gb|ABD68896.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118] Length = 103 Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 36 SRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 SRC+S ++ +L QE GW+ RA + V A L + V FY F PVG Sbjct: 15 SRCESDPHTLVQILRETQELAGWLFRAVLGVGARELTLNLAHVEVAVGFYRFFHTRPVG 73 >gi|225407903|ref|ZP_03761092.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme DSM 15981] gi|225042582|gb|EEG52828.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme DSM 15981] Length = 158 Score = 35.0 bits (79), Expect = 6.6, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 S + ++ + + E++ Y Q V+ +L Q+ +G++S + A + Sbjct: 3 HSETRDTEVQIREILDYYGGREDRASQETVVEMLRELQDAQGFLSPGILAAAAETAGVKE 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V I + +P R + VC C R E L E+ R ++ P ++DG Sbjct: 63 STVRAILKRCPSLKTAPY--RHEIVVCLGKNCGGRNIEVLQEL-RRRLKTGPDGISADGR 119 Query: 133 LSWEEVECQGACVNAPMVMI 152 + C +C AP VM+ Sbjct: 120 VKVSTRSCLKSCRTAPNVMV 139 >gi|167816878|ref|ZP_02448558.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 91] Length = 92 Score = 35.0 bits (79), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P AHV + Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77 Query: 99 CGTTPCMLRGCEKLI 113 C C G E L+ Sbjct: 78 CRAEACRSMGGEALV 92 >gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 572 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++A I+ T ++ V +AH+ VCG C+ C ++++ R + + + Sbjct: 6 ELAIIKESAQETLQIRYGKPGVLHKAHIMVCGGQGCISSKCAEVVDAIREALKKHNFSDH 65 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169 L+ C G C P+ ++ D Y L P+ E I+ Sbjct: 66 VKVVLTG----CMGPCDMGPVAVVFPDAVFYRRLKPKDAEAIV 104 >gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246] Length = 686 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT-RAHVQVCG 100 ++ L Q + G++ + +A+ +++ R+ E+++F+ F+L ++VC Sbjct: 2 IVQRLRDIQNRFGFLPDKELRALAHEINVPLYRIEEVSSFFPAFKLERTNPPEIEMRVCR 61 Query: 101 TTPCMLRGCEKLI-EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 C RG L+ E + L + ++ E V C G C AP V + K Sbjct: 62 DLTCHHRGAAALLDERTGLPVLAAELSEATGKSVCVEGVSCLGRCDRAPAVWVEK 116 >gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 633 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 10/98 (10%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQ 141 +G + V +C T C+ G K+ + ++ +K L ++ G ++ CQ Sbjct: 15 MGAQRRVVICAGTGCVANGAMKVHAAFQQRMAEKNLPFVLELREENDNSGKTAFTRSGCQ 74 Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQG 177 G C P+V + + Y + P ++EII+ G G Sbjct: 75 GFCQMGPLVTVLPENILYTQVKPADIDEIIETSLIGGG 112 >gi|56420345|ref|YP_147663.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426] gi|56380187|dbj|BAD76095.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426] Length = 132 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + HV +C C+ G + + R +I + L D + C G C +A ++ Sbjct: 8 GMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGL----DDAVHTTRTRCNGRCQDACVM 63 Query: 151 MIGKDT--YEDLTPERLEEIIDAFSTGQGDTIR 181 ++ Y +TPER +E++ A G+G +R Sbjct: 64 IVYPQGIWYRQMTPERAKEVVRAH-LGEGVPMR 95 >gi|170087016|ref|XP_001874731.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649931|gb|EDR14172.1| predicted protein [Laccaria bicolor S238N-H82] Length = 2813 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA---------- 59 E PSS S EE A+ +E + + PP + + + A+E G +RA Sbjct: 915 EMLPSSRSHGEEQALESHEFLDKMPPIEVFAGLDAVQSSAEEVPGLATRAELQQWLAEHD 974 Query: 60 AIEVVANILDMAYIRVL-EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 IE I D ++ L ++ TQ LSP T V T + +KL+ + R+ Sbjct: 975 TIEKETEIFDTGELKKLRQLTKAATQRNLSPQDT----DVIELTLTTIYELDKLLHLLRD 1030 Query: 119 KIHQKPLHRNSDGTLSWEE 137 + L L+WEE Sbjct: 1031 RSEHLEL---LSVRLTWEE 1046 >gi|309389843|gb|ADO77723.1| NADH-quinone oxidoreductase chain E [Halanaerobium praevalens DSM 2228] Length = 79 Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC-QGACVNAPMVMIGK 154 +++C TPC L G L+E + L + + + C C AP++ Sbjct: 6 LKICIGTPCHLMGAADLLEA------VEELDLDLKNQIEIKTTHCIDNCCDKAPVIKFNG 59 Query: 155 DTYEDLTPERLEEII 169 Y+DL PE+L +II Sbjct: 60 KIYQDLNPEKLYKII 74 >gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 594 Score = 34.7 bits (78), Expect = 9.0, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 17/103 (16%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C G +++ ++++ + +N D + + C G C P+V++ Sbjct: 3 RAHVLVCGGTGCTSSGSHGVMDGLKSELKK----QNLDDEVLVVQTGCHGMCEMGPIVVV 58 Query: 153 GKD------TYEDLTPERLEE-------IIDAFSTGQGDTIRP 182 + +D PE +EE + TG+GD P Sbjct: 59 YPEGTFYCRVSKDDVPELVEEHLLKGRTVDRLLYTGEGDVHVP 101 >gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822] gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822] Length = 546 Score = 34.7 bits (78), Expect = 9.0, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 16/91 (17%) Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----CQGACVNAPMVMIGKDT-- 156 C GCE + K QK + +G L E+VE C G C P+V I + Sbjct: 25 CTSTGCEAANSLTVKKNLQKAV---KEGHLE-EQVEIIGVGCMGFCGKGPLVQIDPENTL 80 Query: 157 YEDLTPERLEEIIDAFSTG-----QGDTIRP 182 YE++TPE+ II+ + G QGD P Sbjct: 81 YEEVTPEQAASIIEGINGGTCNVTQGDINHP 111 >gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 552 Score = 34.7 bits (78), Expect = 9.0, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150 R + C +TPC+ G + E + I + L + + C G C P++ Sbjct: 21 RCRLLCCASTPCISSGGTAVYEAVKQAIEAEGLQAEVEAVATG----CVGPCSRGPLITV 76 Query: 151 -MIGKD--TYEDLTPERLEEIID 170 M G++ YE +TPE I+D Sbjct: 77 KMEGREDVVYEQVTPEMAARILD 99 >gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Acidovorax ebreus TPSY] gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax ebreus TPSY] Length = 661 Score = 34.7 bits (78), Expect = 9.6, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 12/144 (8%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + + +E + + +R P + +I L ++ G + + +A ++++ Sbjct: 32 QPEASALAEVQTL----IGARPPEGYARDRLIEHLHLINDRHGALYERHLVALARLMNLP 87 Query: 72 YIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F++ + R ++VC C + G + L+ + L Sbjct: 88 MAEVYEVASFYHHFEVLRDADGPPRLVLRVCNGLSCCMAGADALLAELPGR-----LSAA 142 Query: 129 SDGTLSWEEVECQGACVNAPMVMI 152 G + + C G C AP+ ++ Sbjct: 143 GHGDVRVQAAPCVGRCEQAPVAVV 166 Searching..................................................done Results from round 2 >gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 218 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 218/218 (100%), Positives = 218/218 (100%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA Sbjct: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI Sbjct: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 >gi|224046085|ref|XP_002190748.1| PREDICTED: putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata] gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata] Length = 244 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +I+ YP +AV+ +L AQ Q GW+ +A Sbjct: 33 LFVHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQRQHGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 93 MNKVAEVLEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 152 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G +DD Sbjct: 210 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRDD 243 >gi|118086790|ref|XP_001232141.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) isoform 1 [Gallus gallus] gi|118086792|ref|XP_424129.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) isoform 2 [Gallus gallus] Length = 245 Score = 324 bits (831), Expect = 6e-87, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +IS YP +AV+ +L AQ Q GW+ +A Sbjct: 34 LFVHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSAAVMAVLDLAQRQHGWLPISA 93 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 94 MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 152 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 153 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 210 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + D Sbjct: 211 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 244 >gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Canis familiaris] Length = 249 Score = 323 bits (830), Expect = 7e-87, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 122/213 (57%), Gaps = 4/213 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + +I YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQ 246 >gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Nomascus leucogenys] Length = 249 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2 [Oryctolagus cuniculus] Length = 249 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Ailuropoda melanoleuca] Length = 249 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|109121568|ref|XP_001099724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Macaca mulatta] Length = 249 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Bos taurus] gi|128865|sp|P04394|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH dehydrogenase subunit II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus] gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus] gi|296473660|gb|DAA15775.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Bos taurus] Length = 249 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase-like [Bos taurus] Length = 254 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 43 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 102 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 103 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 161 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 162 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 219 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 220 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 253 >gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Callithrix jacchus] Length = 249 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis] Length = 451 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 204 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 263 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 264 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 322 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 323 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 380 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 +PGP+ R S PAGGLTSL + Sbjct: 381 KPGPRSGRFSCEPAGGLTSLTEPPKG 406 >gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Macaca mulatta] Length = 249 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCML + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLGNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|115502496|sp|Q0MQI8|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|115502498|sp|Q0MQI7|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla] gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus] Length = 249 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Pan troglodytes] gi|115502497|sp|Q0MQI9|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes] Length = 249 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Homo sapiens] gi|20455499|sp|P19404|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic construct] Length = 249 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Meleagris gallopavo] Length = 243 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 124/215 (57%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F+ E+ + +I YP +AV+ +L AQ Q GW+ +A Sbjct: 32 LFVHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 92 MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ Sbjct: 151 GIEVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 208 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + D Sbjct: 209 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 242 >gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens] gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo sapiens] gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens] Length = 249 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus] Length = 212 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 1 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 61 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 119 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 120 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 177 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 178 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 211 >gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Pongo abelii] Length = 249 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKIGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Xenopus (Silurana) tropicalis] gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana) tropicalis] gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus (Silurana) tropicalis] Length = 243 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 117/214 (54%), Gaps = 4/214 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 V R E + F F+ E+ + +I YP AVIP+L AQ Q GW+ +A+ Sbjct: 33 FVHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHKAGAVIPVLDLAQRQHGWLPISAM 92 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA +L+M +RV E+ATFYT F PVG + HVQ+C TTPCML + ++E K+ Sbjct: 93 NKVAEVLEMPAMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCMLCNSDSILEAIEKKLG 151 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 SD + EVEC GACVNAPMV I + YEDLTP+ +E IID G+ Sbjct: 152 IHVGETTSDKLFTLTEVECLGACVNAPMVQINDNYYEDLTPKDIENIIDELKAGK--VPT 209 Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL K G + D Sbjct: 210 PGPRNGRFSCEPAGGLTSLT-GPPKGPGFGVRAD 242 >gi|194214480|ref|XP_001489155.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Equus caballus] Length = 246 Score = 319 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 35 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 94 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 95 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 153 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIIDA G Sbjct: 154 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDALKAG--TIP 211 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 212 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGLQAG 245 >gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2 [Ictalurus punctatus] gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2 [Ictalurus punctatus] Length = 244 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 4/214 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 34 FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA ILD++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+ Sbjct: 94 NKVAEILDVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLG 152 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 K +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ Sbjct: 153 IKVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPP 210 Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 211 PGPRNGRFSCEPAGGLTSLTE-PPPGPGFGVRAD 243 >gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens] Length = 249 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTEPPKG 240 >gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus] Length = 259 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 48 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 224 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G + Sbjct: 225 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 258 >gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Rattus norvegicus] gi|83305118|sp|P19234|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus] gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a [Rattus norvegicus] Length = 248 Score = 318 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247 >gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Mus musculus] gi|146345463|sp|Q9D6J6|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit; Flags: Precursor gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus] gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus] gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus] gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus] gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus] gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus] Length = 248 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247 >gi|126321913|ref|XP_001370300.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV2 [Monodelphis domestica] Length = 239 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 28 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKSYPEGHKAAAVLPVLDLAQRQNGWLPISA 87 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 88 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 146 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SD + EVEC GACVNAPMV I + YEDLTP+ +EEIID G + Sbjct: 147 GIKVGETTSDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAG--NVP 204 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 205 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQSG 238 >gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii] Length = 213 Score = 317 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 +PGP+ R S PAGGLTSL + Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213 >gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] Length = 241 Score = 317 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 30 LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC+ K+ Sbjct: 90 MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P DG + EVEC GACVNAPMV + D YEDLT + EEI+D G+ Sbjct: 149 GISPGETTKDGKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDTEEILDDLKQGK--VP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 RPGP+ R +S PAGGLTSL ++ Sbjct: 207 RPGPRNGRFASEPAGGLTSLTEDPKG 232 >gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus] Length = 248 Score = 317 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 97 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G + Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247 >gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens] Length = 231 Score = 317 bits (814), Expect = 6e-85, Method: Composition-based stats. Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 20 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 79 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG +QVC TTPCMLR + ++E + K+ Sbjct: 80 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYY-IQVCTTTPCMLRNSDSILEAIQKKL 138 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 139 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 196 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 197 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 230 >gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens] Length = 249 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGESTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3) [Rattus norvegicus] Length = 241 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 30 LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 90 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I D YEDLTP+ +EEIID G+ Sbjct: 149 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G Sbjct: 207 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVPAG 240 >gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii] Length = 213 Score = 317 bits (813), Expect = 8e-85, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--MP 189 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 +PGP+ R S PAGGLTSL + Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213 >gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx] Length = 213 Score = 317 bits (812), Expect = 9e-85, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 13 LFVHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 73 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEXIQKKL 131 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 +PGP+ R S PAGGLTSL + Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213 >gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca] Length = 209 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+ Sbjct: 1 HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 60 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ K Sbjct: 61 VAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIK 119 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ +PG Sbjct: 120 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKPG 177 Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 P+ R S PAGGLTSL + K G + Sbjct: 178 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 208 >gi|149641744|ref|XP_001507932.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Ornithorhynchus anatinus] Length = 266 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A+ Sbjct: 58 HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 117 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA +L + +RV E+ATFYT + PVG + HVQVC TTPCMLR + ++E + K+ K Sbjct: 118 VAEVLGVPPMRVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRDSDSILEAIQKKLGIK 176 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ +PG Sbjct: 177 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPG 234 Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 P+ R S PAGGLTSL + K G + Sbjct: 235 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 265 >gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis] Length = 244 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 124/215 (57%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+EE+ + +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTAENNPETPFEFTEENKKRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPLSA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L++ +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+ Sbjct: 93 MNKVAEVLEIPPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEALQNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 152 GIKVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGR--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + K G + D Sbjct: 210 PPGPRGGRFSCEPAGGLTSLTE-PPKGPGFGVRSD 243 >gi|227297|prf||1701345A NADH dehydrogenase FeS protein Length = 249 Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats. Identities = 86/215 (40%), Positives = 120/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QV TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVGTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGGLTSL + K G + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248 >gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Sus scrofa] gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa] Length = 249 Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F E+ + YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 98 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 +PGP+ R S PAGGLTSL + Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTEPPKG 240 >gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Anolis carolinensis] Length = 289 Score = 313 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 123/215 (57%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + +++ YP +AVIP+L AQ Q GW+ +A Sbjct: 78 LFVHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKSAAVIPVLDLAQRQHGWLPISA 137 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL M +RV E+ATFYT + PVG + H+Q+C TTPCMLR + ++E + K+ Sbjct: 138 MNKVAEILKMPPMRVYEVATFYTMYNRKPVG-KHHIQICTTTPCMLRDSDSILEAIQQKL 196 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SD + EVEC GACVNAPMV I + YEDLT + +E+I+D G+ Sbjct: 197 GIKVGETTSDQLFTLTEVECLGACVNAPMVQINDNYYEDLTTKDIEDILDELKAGK--VP 254 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S P GGLTSL + K G + D Sbjct: 255 KPGPRNGRFSCEPVGGLTSLTE-PPKPPGFGVRSD 288 >gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus mordax] Length = 244 Score = 313 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F++E+ + +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTPDNNPDTPFEFTDENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L++ +RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 93 MNKVAEVLEVPPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCNSDSILEAIKNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D S EVEC GACVNAPMV I + YEDL+P+ +EEIID G Sbjct: 152 GIKVGETTPDKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIEEIIDELKAG--TIP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLT L + G + D Sbjct: 210 APGPRNGRFSCEPAGGLTCLTE-PPPGPGFGVRAD 243 >gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus furcatus] Length = 244 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 3/213 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 34 FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA IL+++ +RV E+ATFYT F PVG + H+Q+C TTPCML + +++ +NK+ Sbjct: 94 NKVAEILEVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLG 152 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + +DG + EVEC GACVNAPMV I + YEDL P +E IID G+ Sbjct: 153 IEVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPP 210 Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 PGP+ R S PAGGLTSL + D Sbjct: 211 PGPRNGRFSCEPAGGLTSLTGPPPGPGLGVRPD 243 >gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor [Danio rerio] gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio] Length = 244 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ V +I+ YP +A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTPENNPDTPFEFTPENMKRVEAIINNYPEGHKAAATIPVLDLAQRQNGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L +A +RV E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 93 MNKVAEVLGIAPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K +D + EVEC GACVNAPMV I + YEDL P +E+IID G+ Sbjct: 152 GIKVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGR--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 210 PPGPRSGRFSCEPAGGLTSLTE-PPPGPGVGVRAD 243 >gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo salar] Length = 244 Score = 310 bits (795), Expect = 9e-83, Method: Composition-based stats. Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 93 MNKVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K +D S EVEC GACVNAPMV I + YEDL+P+ +++I+D G+ Sbjct: 152 GIKAGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQILDELKAGK--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 210 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 243 >gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Oncorhynchus mykiss] Length = 265 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ ++ ++ +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 54 IFVHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 113 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 114 MNKVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKL 172 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ Sbjct: 173 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VP 230 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 231 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 264 >gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes aegypti] gi|108878788|gb|EAT43013.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] Length = 240 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ VN +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 29 LFVHRDTAEDNPSIPFEFTEENKKRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT HVQVC TTPC LRG ++++ C+ K+ Sbjct: 89 MHRVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ + D YEDLT + EI+ G+ Sbjct: 148 GIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VP 205 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 RPGP+ R +S P GGLTSL + Sbjct: 206 RPGPRNGRFASEPTGGLTSLTEEPKG 231 >gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42] gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] Length = 385 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 156/218 (71%), Positives = 182/218 (83%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 +PG QIDRI SAP GG TSL K R + KK D S Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218 >gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512] Length = 385 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 156/218 (71%), Positives = 182/218 (83%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 +PG QIDRI SAP GG TSL K R + KK D S Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218 >gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 388 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 155/218 (71%), Positives = 181/218 (83%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 +PG QIDRI SAP GG TSL K R + KK D S Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218 >gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens] Length = 220 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 9 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 68 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + IRV E+ATFYT + PVG + H+Q C TTPCML + ++E + K+ Sbjct: 69 MNKVAEVLQVPPIRVYEVATFYTMYNRKPVG-KYHIQACTTTPCMLPNSDSILEAIQKKL 127 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLT + +EEIID G+ Sbjct: 128 GIKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 185 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R S PAGG T L + K G + Sbjct: 186 KPGPRSGRFSCEPAGGPTPLTE-PPKGPGFGIQAG 219 >gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii] Length = 201 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ E+ + +++ YP +AV+P+L AQ Q GW+ +A Sbjct: 8 LFVHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPISA 67 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 68 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 126 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I YEDLTP+ +EEIID G+ Sbjct: 127 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDELKAGK--IP 184 Query: 181 RPGPQIDRISSAPAGGL 197 +PGP+ R S PAGGL Sbjct: 185 KPGPRSGRFSCEPAGGL 201 >gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae 3841] gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium leguminosarum bv. viciae 3841] Length = 388 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 153/215 (71%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+++A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDR+ SAP GG TSL K R + KK D Sbjct: 181 KPGTQIDRVFSAPEGGPTSLTTEEPKVRARAKKAD 215 >gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Anoplopoma fimbria] gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Anoplopoma fimbria] Length = 244 Score = 307 bits (788), Expect = 6e-82, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+EE+ + + +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTPDNNADTPFDFTEENKMRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L++A +RV E+ATFYT F PVG + +Q+C TTPCML + ++E +NK+ Sbjct: 93 MNKVAEVLEVAPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEAIQNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDL+P+ +E+IID G+ Sbjct: 152 GIKVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGR--VP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL++ K G + D Sbjct: 210 LPGPRNGRFSCEPAGGLTSLIE-PPKGPGFGVRPD 243 >gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 388 Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 154/215 (71%), Positives = 181/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDR+ SAP GGLTSL K R + KK D Sbjct: 181 KPGTQIDRVFSAPEGGLTSLTTEEPKARTRAKKAD 215 >gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] Length = 244 Score = 307 bits (787), Expect = 8e-82, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 123/215 (57%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 33 LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+ Sbjct: 93 MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P + DG + VEC GACVNAPMV + D YEDL + +EEI+D+ G+ Sbjct: 152 GIGPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDLEAKDVEEILDSLKQGK--RP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R+S P GGLTSL + K G K + D Sbjct: 210 KPGPRNGRLSCEPKGGLTSLT-SPPKGPGFKLRPD 243 >gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox lucius] Length = 244 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ + ++ +IS YP Q+A IP+L AQ Q GW+ +A Sbjct: 33 IFVHRDTPENNPDTPFEFTADDLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 VA +L++ +RV E+ATFYT PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 93 TNKVAEVLEVPPMRVYEVATFYTMLLRQPVG-KYHIQICTTTPCMLCNSDSILEAIQNKL 151 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K +D S EVEC GACVNAPMV I + YEDLTP+ +++IID G+ Sbjct: 152 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLTPKDMDKIIDELKAGK--IP 209 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 210 PPGPRNGRFSCEPAGGLTSLTE-PPPGPGFGVRAD 243 >gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M] gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330] gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus 2308] gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840] gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365] gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445] gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19] gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo] gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308 A] gi|254689062|ref|ZP_05152316.1| NADH dehydrogenase subunit E [Brucella abortus bv. 6 str. 870] gi|254693544|ref|ZP_05155372.1| NADH dehydrogenase subunit E [Brucella abortus bv. 3 str. Tulya] gi|254697196|ref|ZP_05159024.1| NADH dehydrogenase subunit E [Brucella abortus bv. 2 str. 86/8/59] gi|254701574|ref|ZP_05163402.1| NADH dehydrogenase subunit E [Brucella suis bv. 5 str. 513] gi|254704121|ref|ZP_05165949.1| NADH dehydrogenase subunit E [Brucella suis bv. 3 str. 686] gi|254706979|ref|ZP_05168807.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M163/99/10] gi|254709914|ref|ZP_05171725.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94] gi|254713915|ref|ZP_05175726.1| NADH dehydrogenase subunit E [Brucella ceti M644/93/1] gi|254717027|ref|ZP_05178838.1| NADH dehydrogenase subunit E [Brucella ceti M13/05/1] gi|254718915|ref|ZP_05180726.1| NADH dehydrogenase subunit E [Brucella sp. 83/13] gi|254730092|ref|ZP_05188670.1| NADH dehydrogenase subunit E [Brucella abortus bv. 4 str. 292] gi|256031407|ref|ZP_05445021.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M292/94/1] gi|256044485|ref|ZP_05447389.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. Rev.1] gi|256060918|ref|ZP_05451076.1| NADH dehydrogenase subunit E [Brucella neotomae 5K33] gi|256159528|ref|ZP_05457296.1| NADH dehydrogenase subunit E [Brucella ceti M490/95/1] gi|256254815|ref|ZP_05460351.1| NADH dehydrogenase subunit E [Brucella ceti B1/94] gi|256257311|ref|ZP_05462847.1| NADH dehydrogenase subunit E [Brucella abortus bv. 9 str. C68] gi|256369238|ref|YP_003106746.1| ATP synthase subunit E [Brucella microti CCM 4915] gi|260168541|ref|ZP_05755352.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026] gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196] gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653] gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2] gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1] gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str. 16M] gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330] gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella melitensis biovar Abortus 2308] gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840] gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365] gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445] gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus S19] gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo] gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308 A] gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915] gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038] gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40] gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292] gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870] gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68] gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94] gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1] gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1] gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94] gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33] gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10] gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99] gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513] gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686] gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1] gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1] gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1] gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13] gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026] gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196] gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1] gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2] gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653] Length = 237 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 141/208 (67%), Positives = 172/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S PA GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] gi|115950058|ref|XP_001178801.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] Length = 242 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ + F F+EE+ VN++I+ YP +A +P+L AQ Q GW +A Sbjct: 31 LFVHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+ Sbjct: 91 MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T Sbjct: 150 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R +S P GGLTSL+D G +DD Sbjct: 208 KPGPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 241 >gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941] gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str. 9-941] Length = 237 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 141/208 (67%), Positives = 172/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S PA GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit precursor [Glossina morsitans morsitans] Length = 242 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 112/206 (54%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V+ ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPDVPFEFTAENQKRVDAILSIYPEGHKRGALIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++ C+ + Sbjct: 91 MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILATCKKTL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPM+ I D YEDLT + +EEI+ + Sbjct: 150 GIGVGETTKDMKFTISEVECLGACVNAPMIAINDDYYEDLTSKDMEEILADCKAER--VP 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 R GP+ R +S P G TSL + Sbjct: 208 RAGPRNGRFASEPKGNPTSLTEEPKG 233 >gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238663550|emb|CAZ34426.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Schistosoma mansoni] Length = 248 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 123/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F FS E+ ++ +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPQMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEVILNALKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E I++ G+ Sbjct: 151 NLGIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEEIKAGK-- 208 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTSL + K G K + D Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKSPGFKVRSD 247 >gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894] Length = 322 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 155/215 (72%), Positives = 182/215 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PG QIDRI SAP GGLTSL K + + KK D Sbjct: 181 KPGTQIDRIFSAPEGGLTSLTTEEPKAKTRAKKTD 215 >gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457] gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC 23457] gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28] gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90] Length = 237 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 141/208 (67%), Positives = 171/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S PA GLT+L + K+ Sbjct: 181 KPGPQDGRVTSEPASGLTALTKDLDYKK 208 >gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 203 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 175/203 (86%), Positives = 188/203 (92%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA Sbjct: 1 MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI Sbjct: 61 IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 RPGPQIDRISSAPAGGLTSL++ Sbjct: 181 RPGPQIDRISSAPAGGLTSLVEE 203 >gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Acyrthosiphon pisum] Length = 240 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 29 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+ Sbjct: 89 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T Sbjct: 148 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 205 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R +S P GLTSL + G K + D Sbjct: 206 TPGPRSSRYASEPMDGLTSLKEE-PYGPGFKVRPD 239 >gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTSL + K G K + D Sbjct: 209 KPKPGPQNGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247 >gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTSL + K G K + D Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247 >gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 248 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS E+ +N +IS YPP+ +A+IP L AQ Q GW+ +A Sbjct: 32 LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 92 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTSL + K G K + D Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247 >gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum] Length = 212 Score = 304 bits (779), Expect = 6e-81, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M R +E+ F FS+E+ ++ +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 1 MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ +RV E+ATFYT F P G + H+QVC TTPC LRG + +I + K+ Sbjct: 61 MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 119 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + DG + EVEC GACVNAPM+ + D +EDLT + +E IID G+ T Sbjct: 120 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 177 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R +S P GLTSL + G K + D Sbjct: 178 TPGPRSSRYASEPMDGLTSLKEE-PYGPGFKVRPD 211 >gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis] gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis] Length = 242 Score = 303 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 117/206 (56%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFSAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + ++EI++ + Sbjct: 150 GIGVGETTKDKKFTISEVECLGACVNAPMVSINDDYYEDLTGKDMQEILNDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL+++ Sbjct: 208 PPGPRNGRFASEPKGEPTSLIEDPKG 233 >gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188] gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 303 bits (778), Expect = 9e-81, Method: Composition-based stats. Identities = 138/208 (66%), Positives = 171/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I+++P R QSAVIPLLMRAQEQ+GWV++AA Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEHVAGMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+ Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQ R++S P GLT+L ++ K+ Sbjct: 181 KPGPQDGRVTSEPINGLTALTEDLDYKK 208 >gi|256113341|ref|ZP_05454199.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 3 str. Ether] gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 303 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 140/208 (67%), Positives = 171/208 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W ++ I++YP R QSAVIPLLMRAQEQEGWV++A+ Sbjct: 1 MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDTI Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 + GPQ R++S PA GLT+L ++ K+ Sbjct: 181 KSGPQDGRVTSEPASGLTALTEDLDYKK 208 >gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae] gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae] Length = 246 Score = 302 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + E + F F++E+ V +I+ YP +AVIP+L AQ Q GW+ +A Sbjct: 33 LFVHRDSPENNPDTPFEFTQENLNRVKLIINNYPVGHEAAAVIPVLDLAQRQHGWLPLSA 92 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA IL M +RV E+ATFYT F PVG + HVQ+C TTPC L G + ++E + Sbjct: 93 MNKVAEILKMPRMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCNLGGVGSDVILEAIKK 151 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K+ D + EVEC GACVNAPMV I + YEDLT +EEI+D G+ Sbjct: 152 KLGINVGETTKDNMFTLIEVECLGACVNAPMVQINDNYYEDLTAADMEEILDDLMAGK-- 209 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 T + GP+ R +S P GLTSL G +DD Sbjct: 210 TPKAGPRNGRFASEPLSGLTSLT-TPPTGPGFGVRDD 245 >gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818] Length = 251 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 4/218 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R +EE + F F++ + V +I ++PP+ +A IP+L AQ Q GW+ Sbjct: 37 LFVHRDSEENNDETPFKFTDSNMKRVEAIIGQFPPNHRSAACIPVLDLAQRQNNGWLPLN 96 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA IL M +RV E+ATFYT F PVG + H+QVC TTPCM+RG K+ + + K Sbjct: 97 AMNEVAKILRMPKMRVYEVATFYTMFNREPVG-KYHIQVCTTTPCMVRGAYKVFDHLKAK 155 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + D + EVEC GAC NAPM+ I + YEDLT E ++ I+D G+ T Sbjct: 156 LGLENGETSDDKLFTLLEVECLGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGK--T 213 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PGPQ R ++ P G T+LL+ +KD ++ Sbjct: 214 PKPGPQSGRNAAEPLSGQTTLLETPPPPDHLFRKDGQL 251 >gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium LMG 3301] gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium LMG 3301] Length = 377 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 141/208 (67%), Positives = 170/208 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP++F+F+ E+ W + I+++P R QSAVIPLLMRAQEQ+GWV++AA Sbjct: 1 MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IEHVAAMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF G+GDT+ Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 +PGPQIDR +S P GLTSL + K+ Sbjct: 181 KPGPQIDRETSNPLNGLTSLTEELDYKK 208 >gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni] gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni] Length = 242 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ILD+ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILDLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV + D YEDLT + +++I+ + Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILSDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S PAG TSL + Sbjct: 208 PPGPRNGRFASEPAGNATSLTEEPKG 233 >gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130] gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130] Length = 422 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 141/216 (65%), Positives = 167/216 (77%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP +F FS+ + W + I YP R SAVIPLLMRAQEQEGWV++AA Sbjct: 1 MSVRRLADETVQPDAFKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L M IRVLE+ATFYTQFQL+PVG RAHVQVCGTTPCMLRG ++++VC+ +I Sbjct: 61 IEHIAEMLGMPLIRVLEVATFYTQFQLAPVGKRAHVQVCGTTPCMLRGAGEIMDVCKKRI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP + DG LSWEEVECQGACVNAPMVM+ KD+YEDLT ER+EEIIDAF G GD+I Sbjct: 121 APKPFELSEDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 PGPQIDRI SAP GGLTSL ++ + K +K K Sbjct: 181 PPGPQIDRIYSAPIGGLTSLTEDPTLKGARKTGKGK 216 >gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1] gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1] Length = 203 Score = 300 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 127/204 (62%), Positives = 154/204 (75%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA ++ QP+SF+F+EE+ + I++YP R SAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA++L M YIRVLE+ATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++ Sbjct: 61 AIRVVADMLGMPYIRVLEVATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG + Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATG--NL 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203 PGPQ R SAPAGG T+L + Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202 >gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor (NADH-ubiquinone oxidoreductase 24 kDa subunit) (NADH dehydrogenase subunit II) [Ciona intestinalis] Length = 242 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + E + F F++++ + + + YP +AV+P+L AQ Q GW+ +A Sbjct: 31 IFNHVDTPENNANTPFDFTKKNYERIEAIKANYPEGHKVAAVMPILDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LD+ +RV E+ATFYT + +P+G + H+Q+C TTPCML G + ++EV + K+ Sbjct: 91 MNKVAELLDVPPMRVYEVATFYTMYNRNPIG-KYHLQLCTTTPCMLCGSDGILEVIQKKL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K DG + E EC GACVNAPM+ I YEDL P +EEI+D + G+ Sbjct: 150 GIKVGETTKDGLFTLMEAECLGACVNAPMIQINDMYYEDLKPSDMEEILDDLTNGR--EP 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ +R + P GGLTSL + G + D Sbjct: 208 KPGPRSERFACEPLGGLTSLTE-PPTGPGFGIRTD 241 >gi|119113027|ref|XP_308018.3| AGAP002170-PA [Anopheles gambiae str. PEST] gi|116132852|gb|EAA03768.3| AGAP002170-PA [Anopheles gambiae str. PEST] Length = 231 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ ++ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 20 LFVHRDTPEDNASIPFEFTADNQKRAEAILNIYPEGHKRGAMIPLLDLAQRQHGWLPLSA 79 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + ++RV E+ATFYT F P G + H+QVC TTPC LRG +++++VC+ + Sbjct: 80 MHKVADILGLPHMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEVLDVCKKNL 138 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ + D YEDL+ EEI+++ GQ Sbjct: 139 GIGVGETTKDGKFTISEVECLGACVNAPMLAVNDDYYEDLSVADTEEILNSLKQGQ--QP 196 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 RPGP+ R +S P G LTSL + Sbjct: 197 RPGPRNGRYASEPVGQLTSLTEEPKG 222 >gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi] gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi] Length = 242 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS E+ V+ ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVADILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILEQCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I+ + Sbjct: 150 AIGVGETTKDNKFTISEVECLGACVNAPMVSINDDYYEDLTAKDMQDILSDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGNPTSLSEEPKG 233 >gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba] gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba] Length = 242 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233 >gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta] gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta] Length = 242 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233 >gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae] gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae] Length = 242 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTPENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV + D YEDLT + ++ I+ + Sbjct: 150 SIGVGETTKDKKFTISEVECLGACVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSP- 208 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL++ Sbjct: 209 -PGPRNGRFASEPKGEPTSLIEEPKG 233 >gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2] gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2] Length = 212 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 133/214 (62%), Positives = 167/214 (78%), Gaps = 5/214 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP+SF F++E+ W + I++YP R QSAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKELQPASFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L MA+IRV+EIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++ Sbjct: 61 AIRAVADLLGMAHIRVMEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G + Sbjct: 121 IHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLD--NNSKKRGKK 211 +PGPQIDR +AP GG L + +++ K+GKK Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLQEVGDDATKKGKK 212 >gi|209885056|ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha carboxidovorans OM5] Length = 250 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 131/212 (61%), Positives = 160/212 (75%), Gaps = 3/212 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA +E QP SF F++E+ W + I ++PP R QSAVIP+L R QEQ EGWVS A Sbjct: 1 MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L MA+IRVLEIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++ Sbjct: 61 AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G + Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 +PGPQIDR +AP GG L D + G+ Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLKDITASGDGRG 210 >gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476] gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476] Length = 223 Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 145/204 (71%), Positives = 167/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG ++LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSDELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFGAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ R SS P GLTSLL++ Sbjct: 181 AVGPQNSRQSSEPISGLTSLLEDE 204 >gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae] Length = 243 Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F FS ++ V +++ YP ++A+IPLL AQ Q GW+ +A Sbjct: 32 LFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPLLDLAQRQYGWLPISA 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P G + H+QVC TTPC LRG ++++ + + Sbjct: 92 MHHVADILKLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSNEILDTIKKNL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + +SD + EVEC GACVNAPMV I D YEDLT + EEI+ G+ Sbjct: 151 GLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYEDLTVQDTEEILADLKAGR--KP 208 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R ++ P G TSL G + D Sbjct: 209 KPGPRSGRYAAEPIGEPTSLKGEPP-AAGFGVRAD 242 >gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1] Length = 262 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 4/218 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R E+ +F F+ E+ V + +++PP +A IP+L AQ Q G W+ + Sbjct: 48 LFVHRDTEKNNSSIAFEFTPENMKKVEAITAQFPPGHRAAACIPVLDLAQRQYGGWLPIS 107 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA +L M IRV E+A+FYT F PVG + HVQVC TTPCM+RG + E + K Sbjct: 108 AMDEVARVLQMPKIRVYEVASFYTMFNRDPVG-KYHVQVCTTTPCMVRGAYNIFEHLQKK 166 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + DG + EVEC GAC NAPM+ I + YEDL ++ II+A +G+T Sbjct: 167 LGLHNGETSEDGMFTLLEVECLGACSNAPMIQINDEYYEDLELADVDRIIEALR--KGET 224 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PGPQ R ++ P GGLT+L K + D K+ Sbjct: 225 PKPGPQNGRKAAEPLGGLTALTSEPVDGAHKFRTDGKL 262 >gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogaster] Length = 269 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 58 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 117 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 118 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 176 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + Sbjct: 177 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADK--IS 234 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL + Sbjct: 235 PPGPRNGRFASEPKGEPTSLSEEPKG 260 >gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster] gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia] gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans] gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster] gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia] gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans] gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct] gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct] Length = 242 Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + EVEC GACVNAPMV I D YEDLT + +++I++ + Sbjct: 150 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233 >gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3] gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3] Length = 369 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 148/213 (69%), Positives = 172/213 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI Sbjct: 61 IEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+ Sbjct: 121 HHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 + GPQIDR S P GGLT+L + R K Sbjct: 181 KTGPQIDRHQSVPVGGLTTLTEEIKPDRSNLDK 213 >gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup] gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup] Length = 217 Score = 297 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 146/208 (70%), Positives = 169/208 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R SS P GLTSL+D+ +K+ Sbjct: 181 AVGPQSSRKSSEPISGLTSLIDDEKEKK 208 >gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans SI85-9A1] Length = 488 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 141/214 (65%), Positives = 165/214 (77%), Gaps = 1/214 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ FQP F+F++E+A W I +YP R QSAVIPLLMRAQ+QEGWV++AA Sbjct: 1 MSVRRLADDAFQPHGFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQDQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L+M IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L VCR+KI Sbjct: 61 IEHVADMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGAEDLKAVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P HRN GTLSWEEVEC GACVNAPMVMI D YEDLTPERLEEIID F G+G + Sbjct: 121 HAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPERLEEIIDEFEAGRGGDV 180 Query: 181 RPGPQIDRISSAPAGGLTSLL-DNNSKKRGKKKK 213 + GPQ R S P GGLT+L D + +K + Sbjct: 181 KTGPQNGRHESVPIGGLTTLKGDYDDLVADQKSQ 214 >gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum] gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium castaneum] Length = 243 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 4/214 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 R E+ F F+ E+ + +++ YP ++A+IPLL AQ Q GW+ +A+ Sbjct: 33 FNHRDTPEDNPDIPFDFTPENKKRADAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISAM 92 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG +++++ + + Sbjct: 93 HKVAEILNLPRMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTIKCNLK 151 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + +SDG + EVEC GACVNAPM+ + D YEDLT + EEI++ + + Sbjct: 152 LEVGETSSDGMFTLSEVECLGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNK--KPK 209 Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R ++ P G T L G + D Sbjct: 210 PGPRNGRFAAEPIGEPTCLAGEPPG-PGFGVRSD 242 >gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58] gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens str. C58] Length = 369 Score = 297 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 150/213 (70%), Positives = 172/213 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP +F+F+ ++ W + I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI Sbjct: 61 IEKVADMLDMAYIRVLEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H PLH N GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F G+GDT+ Sbjct: 121 HHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 + GPQIDR S P GGLT+L + R K Sbjct: 181 KTGPQIDRHESVPVGGLTTLTEEIKPDRSNLDK 213 >gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS278] gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) (NDH-1, chain E) [Bradyrhizobium sp. ORS278] Length = 203 Score = 297 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 127/204 (62%), Positives = 154/204 (75%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA +E QP+SF+F++++ + I++YP R SAVI +L RAQEQ EGWVS A Sbjct: 1 MSVRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA++L M YIRVLEIATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++ Sbjct: 61 AIRVVADMLGMPYIRVLEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H + DG SWEEVEC GACVNAPMV + KDTYEDLTPE +++D F+TG + Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATG--NL 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203 PGPQ R SAPAGG T+L + Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202 >gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506] gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506] Length = 500 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 141/215 (65%), Positives = 164/215 (76%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP SF+F++E+A W + + +YP R QSAVIPLLMRAQ+QEGWV++AA Sbjct: 1 MSVRRLADDSIQPQSFAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +E VA+ L M IRVLE+ATFYTQF L P+GTRAHVQVCGTTPCMLRG E L VC+ KI Sbjct: 61 VEHVADRLKMPLIRVLEVATFYTQFMLQPIGTRAHVQVCGTTPCMLRGAEDLKAVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P HRNS GTLSWEEVECQGACVNAPMVMI KD YEDLTPERLEEIID F G G + Sbjct: 121 HPVPFHRNSSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAGNGANV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GPQ R S P GGLTSL ++ K+K++ Sbjct: 181 TTGPQNGRHQSVPIGGLTSLTEDYGDLIAKQKREG 215 >gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Brugia malayi] gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Brugia malayi] Length = 234 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M V R +E + F F+ E+ + +IS+YPP A+IP+L AQ Q GW+ +A Sbjct: 23 MVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLAQRQHGWLPISA 82 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+ Sbjct: 83 MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 141 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K DG S EVEC GACVNAPMV I D YEDLTPE + +I+D F G+ Sbjct: 142 GIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTPEDISDILDEFKAGK--RP 199 Query: 181 RPGPQIDRISSAPAGG 196 +PGP+ R ++ P G Sbjct: 200 KPGPRSGRTAAEPING 215 >gi|221127644|ref|XP_002160547.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Hydra magnipapillata] Length = 243 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+EE+ + +IS YP +A IPLL Q Q GWV + Sbjct: 32 LFVHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPLSG 91 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L M +RV E+ATFYT F PVG + H+Q+C TTPCML + ++ V + K+ Sbjct: 92 MNYVAKMLQMPEMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLCNSDSIMSVIKEKL 150 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P D + EVEC GACVNAPMV I + YEDL P + EII++ + +G Sbjct: 151 QINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESLA--KGIIP 208 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R +S PAGGLTSL + + G K + Sbjct: 209 KPGPRSGRFASEPAGGLTSLT-SPPRGPGFKLQSG 242 >gi|17561328|ref|NP_506376.1| hypothetical protein F53F4.10 [Caenorhabditis elegans] gi|6647669|sp|Q20719|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; Flags: Precursor gi|3877525|emb|CAB01203.1| C. elegans protein F53F4.10, confirmed by transcript evidence [Caenorhabditis elegans] Length = 239 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 113/206 (54%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVAKILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+ Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGR--KP 203 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 GP+ R+++ P G LTSL + Sbjct: 204 AAGPRSGRLAAEPFGELTSLKETPPG 229 >gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4] gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4] Length = 266 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 148/216 (68%), Positives = 179/216 (82%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP+SF+FSEE+A+W I +YP R QSAVIPLLMRAQEQ+GWV++A Sbjct: 1 MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA+ LDM YIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+L+++C+ KI Sbjct: 61 IEFVADKLDMPYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELMKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +PL RNS GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIIDAF G+G + Sbjct: 121 HPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFEAGKGVEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 + GPQI+R+ SAP GGLTSL + + R + + + Sbjct: 181 KTGPQIERVFSAPEGGLTSLTEEITPVRWGEGQSGQ 216 >gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1] gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1] Length = 345 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 150/204 (73%), Positives = 172/204 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+VRRLA+E QP F+F+ E+ W + I +YPP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MAVRRLADEAVQPQGFAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +LDM IRVLE+ATFYTQFQL+PVGTRAHVQVCGTTPCMLRG LIEVC+++I Sbjct: 61 IEHVAKMLDMPLIRVLEVATFYTQFQLAPVGTRAHVQVCGTTPCMLRGAGDLIEVCKSRI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P H N GTLSWEEVECQGACVNAPM+MI KD+YEDLTPERLEEIIDAF G+GDTI Sbjct: 121 HPEPFHTNEGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGKGDTI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 +PG QIDR++SAPA GLTSL D + Sbjct: 181 KPGTQIDRLTSAPASGLTSLTDES 204 >gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium radiobacter K84] gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium radiobacter K84] Length = 381 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 147/213 (69%), Positives = 180/213 (84%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+F++E+A+W + I +YP R QSA+IPL+MRAQEQEGWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMA+IR LE+ATFYTQFQL+PVGT+AH+QVCGTTPCMLRG E L++VC++KI Sbjct: 61 IETIADMLDMAHIRALEVATFYTQFQLNPVGTKAHIQVCGTTPCMLRGAEGLVKVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + RN+DGTLSWEEVECQGACVNAPMV+IGKDTYEDLTPERLEEIIDAFS G+G + Sbjct: 121 NGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFSAGEGSKV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 GPQIDR+ SAP GGLTSL K + K Sbjct: 181 PTGPQIDRVFSAPEGGLTSLTTEAPKAKSASGK 213 >gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110] gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum USDA 110] Length = 203 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 124/203 (61%), Positives = 154/203 (75%), Gaps = 3/203 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MSVRRLA +E QP+SF+F+EE+ + + I++YP R SAVI +L RAQEQ GWVS A Sbjct: 1 MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V+A++LDM YIRVLE+ATFYT FQL+PVG +AHVQVCGTTPC LRG E LI VC ++ Sbjct: 61 AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC GACVNAPMV+IGKDTYEDLT E +++D F++G + Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PGPQ R SAP G T+L + Sbjct: 179 PKPGPQNGRQFSAPITGPTTLKE 201 >gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1] Length = 217 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 145/206 (70%), Positives = 163/206 (79%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEYVAQMLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+ I Sbjct: 121 HSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKNSDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 GPQ R SS P GLTSL+D N Sbjct: 181 AVGPQNGRKSSEPINGLTSLIDENEG 206 >gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae] gi|187030243|emb|CAP30450.1| hypothetical protein CBG_11518 [Caenorhabditis briggsae AF16] Length = 239 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 113/206 (54%), Gaps = 3/206 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + + + YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTPENEDRIKAICAIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 DG + EVEC GACVNAPM+ I D +EDLTP+ + EI+D G+ Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVHEILDDLKAGR--KP 203 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 GP+ R+++ P G LTSL + Sbjct: 204 AAGPRSGRLAAEPFGELTSLKETPPG 229 >gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521] gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521] Length = 269 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 121/215 (56%), Gaps = 7/215 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R + F F+EE+A E+IS YP ++AVIPLL Q Q GWVS + Sbjct: 54 LFVHRNTDYNNPDIPFEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLGQRQNSGWVSIS 113 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +L+M +RV E+ATFYT F PVG + +Q+C TTPCML G K++E Sbjct: 114 VMNYVAKLLEMPPMRVYEVATFYTMFNREPVG-KYFLQLCTTTPCMLGGCGSTKILEALE 172 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 +K+ K D + EVEC GAC NAPM+ I D +EDLTPE + IID S G+ Sbjct: 173 SKLGIKAGQTTKDNKFTLVEVECLGACANAPMIQINDDFFEDLTPESMNNIIDKLSNGE- 231 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 ++PGPQ R SS PA G T+L + GK Sbjct: 232 -KVKPGPQSGRHSSEPANGRTALT-SEPYGPGKFC 264 >gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3] Length = 225 Score = 293 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 147/204 (72%), Positives = 166/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGRGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204 >gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4] gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4] gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4] Length = 270 Score = 293 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E F FSE++ + E+I+RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LHVHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++E++ A Sbjct: 158 HLGITPGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKELLTALKESATA 217 Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +GQ PGP RIS + GLT+L + +KD + Sbjct: 218 TSGQVKIPAPGPLSGRISCENSAGLTNLHNPVWDPETMMRKDGAL 262 >gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium marneffei ATCC 18224] gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium marneffei ATCC 18224] Length = 260 Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FS E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LFVHRNKPDNNPSIPFKFSAENEKVIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G +K+++ Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINK 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE + +++ A + Sbjct: 158 HLGITPGHTTEDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESITQLLTALKESATN 217 Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLT+L + +KD ++ Sbjct: 218 PAVKVPAPGPLSGRDTCENSAGLTNLKEVTWNPEQMMRKDGEL 260 >gi|254568298|ref|XP_002491259.1| hypothetical protein [Pichia pastoris GS115] gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Pichia pastoris GS115] gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Pichia pastoris CBS 7435] Length = 241 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R ++ F F++E+ E+I++YPP + AV+PLL Q Q G+ S + Sbjct: 30 ISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA LDM +RV E+ATFYT + P+G + +VQVC TTPC L G + +++ + Sbjct: 90 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNVQVCTTTPCQLCGSDGIMKAITEHL 148 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P D + +EVEC GACVNAPM+ + D YEDLTPER EI+ F +G D Sbjct: 149 QIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQSG--DIP 206 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP DR S P G L + +DD Sbjct: 207 KPGP-ADRHSCEPHSGPKVLTNETPYHVKDFIRDD 240 >gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73] gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73] Length = 225 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 147/204 (72%), Positives = 166/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAELLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204 >gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse] gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse] Length = 216 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 144/203 (70%), Positives = 166/203 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+Q+CGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEVATFYTQFQLQPVGTKAHIQICGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203 GPQ R SS P GLTSL+D+ Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDD 203 >gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis Pb03] gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 259 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ + Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + SD + EVEC GACVNAPMV I D YEDLTPE + ++ A + D Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217 Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 T PGP R S + GLT+L N S + +KD ++ Sbjct: 218 TTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259 >gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419] gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae WSM419] Length = 273 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 150/219 (68%), Positives = 173/219 (78%), Gaps = 3/219 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI Sbjct: 61 IEKIADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 AGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFEAGKGTDV 180 Query: 181 RPGPQIDRISSAPAGGLTSLL---DNNSKKRGKKKKDDK 216 PGPQIDRI SAP GGLT+L + R K K+++ Sbjct: 181 VPGPQIDRIYSAPIGGLTTLQAPAEEKKPARASKAKEEQ 219 >gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4] gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4] Length = 468 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 116/211 (54%), Positives = 147/211 (69%), Gaps = 5/211 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 M+VRRLA E QP F F+ ++ W ++I RYP R SAVIPLL RAQEQ GWV Sbjct: 1 MAVRRLAAE--QPECFEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++LD+ +IRVLE+ATFYT FQL PVG++AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIADMLDIPHIRVLEVATFYTMFQLQPVGSKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + G+ Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAEGK--E 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 + PGPQ R S P GG TSL + N +G+ Sbjct: 177 VMPGPQNGRRFSMPEGGQTSLTEVNDNSKGE 207 >gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1] gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str. Houston-1] Length = 222 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 146/204 (71%), Positives = 166/204 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ +QP+ FSF++E+ IWV I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI Sbjct: 61 IEHIAQILSMAYIRVLEIATFYTQFQLQPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N DG+LSWEEVEC GACVNAPMVMI KDTYEDLT +RLEEIIDAF G+G I Sbjct: 121 HHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFEAGKGAEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ R SS P GLTSL+D Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDEK 204 >gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C] Length = 223 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 146/204 (71%), Positives = 164/204 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204 >gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC BAA-1498] Length = 225 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 146/204 (71%), Positives = 164/204 (80%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+ QP+ FSF++E+ +WV I +YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG +LI+VC+ KI Sbjct: 61 IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H KP N GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF G+G I Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 GPQ +R SS P GLTSL+D N Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204 >gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum C19] gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum C19] Length = 218 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA QP+SF+FS E+ N I++YP +R QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLA--AVQPASFAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A +L M IRV E+ATFYT F L PVG+ A +QVCGTTPCMLRG + L+ VC+ KI Sbjct: 59 ISAIARLLGMPQIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSDALMAVCKAKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K ++DG +W+EVEC GAC NAPM I YEDLT E + +IID F+ G+ T Sbjct: 119 GPKD-KLSADGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R +S P GG T+L D+ G K KI Sbjct: 176 APGPYNGRKTSEPLGGATTLSDSK-LYDGSAAKAIKI 211 >gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 259 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217 Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + PGP R S + GLT+L N S + D ++ Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259 >gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021] gi|307301094|ref|ZP_07580863.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] gi|8473988|sp|P56909|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName: Full=NADH dehydrogenase I subunit E 1; AltName: Full=NDH-1 subunit E 1 gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021] gi|306904049|gb|EFN34635.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] Length = 275 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 150/221 (67%), Positives = 175/221 (79%), Gaps = 5/221 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180 Query: 181 RPGPQIDRISSAPAGGLTSL-----LDNNSKKRGKKKKDDK 216 PGPQIDR+ SAP GGLT+L ++ R K KD++ Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKSVRASKAKDEQ 221 >gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis] gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis] Length = 264 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV + D YEDLT + +++I+ + Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGKPTSLTEEP 231 >gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb01] gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides brasiliensis Pb01] Length = 259 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ + Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + SD + EVEC GACVNAPMV I D YEDLTPE + ++ A + D Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217 Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R S + GLT+L N S + +KD ++ Sbjct: 218 VTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259 >gi|260462234|ref|ZP_05810478.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum WSM2075] gi|259032094|gb|EEW33361.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum WSM2075] Length = 426 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 130/205 (63%), Positives = 159/205 (77%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVM+ KDT+EDLTPERL EIID + G+G ++ Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205 PGPQ R S PA GLT+L + + Sbjct: 181 APGPQNGRTGSEPATGLTTLKNEKA 205 >gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A] Length = 251 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 124/217 (57%), Positives = 158/217 (72%), Gaps = 3/217 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++ Sbjct: 61 AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++G + Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 +PGPQIDR SAP GG T+L +K G ++ + Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGRRASAQ 215 >gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia pulex] Length = 243 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 5/214 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 + V R + F+F++E+ N +I+ YP ++AVIPLL AQ Q GW+ + Sbjct: 31 LFVHRDTPKNNPDVPFAFTKENVERANAIINIYPDGHKRAAVIPLLDLAQRQAGGWLPIS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA++L M +RV E+ATFYT F +P+G + VQVC TTPC L G EK++ + K Sbjct: 91 AMHAVADMLSMPKMRVYEVATFYTMFNRNPIG-KHFVQVCTTTPCWLNGSEKIMNCLKKK 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 ++ +G S EVEC GACVNAPM+ I + +EDLT + EEIID G+ Sbjct: 150 LNLNNGETTPNGEFSLLEVECLGACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGR--E 207 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 + GP+ R ++ P GLTSL + G K + Sbjct: 208 PKAGPRNGRFAAEPRDGLTSLTE-PPPGPGFKIQ 240 >gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura] gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura] Length = 264 Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 3/204 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P G + H+QVC TTPC LRG ++++E C+ ++ Sbjct: 91 MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV + D YEDLT + +++I+ + Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADK--IS 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204 PGP+ R +S P G TSL + Sbjct: 208 PPGPRNGRFASEPKGKPTSLTEEP 231 >gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 260 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LHVHRNKPDNNPSIPFKFSKENEKIIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQVC TTPC L G +K+++ N Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINN 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG--- 175 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE + +++ A Sbjct: 158 HLGITPGHTTDDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESIVQLLTALKESATN 217 Query: 176 -QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLT+L + +KD ++ Sbjct: 218 PAAKVPAPGPLSGRETCENSAGLTNLKEVVWNPEQMMRKDGEL 260 >gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614] gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614] Length = 437 Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 147/210 (70%), Gaps = 5/210 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 M+VRRLA E QP SF+F+E++ W ++I RYP R SAVIPLL RAQEQ EGWVS Sbjct: 1 MAVRRLAAE--QPESFAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIAELLDMPKIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLTP+ ++ID + G+ Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGK--E 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 + PGPQ R + GG TSL + + +G Sbjct: 177 VTPGPQNGRRFAMAEGGQTSLTELDDDTKG 206 >gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens] gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens] Length = 209 Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 4/212 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R +++ F F+E+S ++I+ YP +A+IPLL AQ Q GW+ A+ Sbjct: 1 HRDSKDNNLDIPFEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNY 60 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA+ L ++ +R+ E+ATFYT F P+G + H+Q+C TTPCMLR + ++ V ++K+ + Sbjct: 61 VADYLSVSRMRIYEVATFYTMFNRYPMG-KYHIQICTTTPCMLRDSDSILNVIKSKLGIE 119 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 DG + EVEC GACVNAPMV I D YEDLT +EEI+D+ G G Sbjct: 120 IGQTTKDGLFTLSEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAG--SKPTAG 177 Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 P+ R + P GLTSL + G +DD Sbjct: 178 PRSGRKCAEPITGLTSL-SSPPTGPGFGVRDD 208 >gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 259 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + D Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKGAETD 217 Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R S + GLT+L N S + D ++ Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRSDGEL 259 >gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis ER-3] gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces dermatitidis ATCC 18188] Length = 259 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +V R E F FSEE+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 FAVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAVMPLLDLGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + HV+VC TTPC L G +K+++ + Sbjct: 99 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYHVKVCTTTPCQLGGCGSDKIMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + D + EVEC GACVNAP+V I D YEDLTPE + ++DAF + + Sbjct: 158 HLGVSNGQTTPDKLYTVLEVECLGACVNAPVVQINDDYYEDLTPESVVSLLDAFKESETN 217 Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP +R + + GLT+L N S + D ++ Sbjct: 218 KSVKIPPPGPLSERNTCENSAGLTNLT-NPSWSPELMRTDGEL 259 >gi|307317828|ref|ZP_07597266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti] gi|306896590|gb|EFN27338.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] Length = 276 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 150/222 (67%), Positives = 174/222 (78%), Gaps = 6/222 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI Sbjct: 61 IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +P N GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F G+G + Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLL------DNNSKKRGKKKKDDK 216 PGPQIDR+ SAP GGLT+L + R K KD++ Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKKPVRASKAKDEQ 222 >gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium dendrobatidis JAM81] Length = 257 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F F+ E+I++YP + A +PLL AQ Q GWVS ++ Sbjct: 46 LFVHRNTKVNNPDIPFEFTPAEMKRAQEIIAKYPAQYKKGATMPLLDLAQRQLGWVSISS 105 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A +L+M +RV E+ATFYT + PVG + +QVC TTPC L G + +++ + Sbjct: 106 MNYIAKLLEMPPMRVYEVATFYTMYNRDPVG-KYFLQVCTTTPCQLCGSDAIVKAAEETL 164 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SD + EVEC GACVNAP++ + D YEDLT + + ++++ +G Sbjct: 165 GIKLGETTSDNMFTLVEVECAGACVNAPVMAVNDDYYEDLTVDATKSLLESIK--KGTVP 222 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP R++ P GLTSL + G + D Sbjct: 223 KPGPVSGRMNCEPRAGLTSLTTKPTG-PGFGVRAD 256 >gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 382 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 118/206 (57%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPE--QPESFAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VCR KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E IID ++G+ P Sbjct: 120 KPHQLSADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GGLTSL + K Sbjct: 178 GPQNGRYAAEPKGGLTSLKEYEPGKA 203 >gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14] Length = 228 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 127/213 (59%), Positives = 156/213 (73%), Gaps = 3/213 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I +YP R SA I +L RAQEQ GWVS A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+N+ Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQIDR SAP GG T+L +K G ++ Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGQR 211 >gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces capsulatus H143] gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 259 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQVC TTPC L G K+++ + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177 + D + EVEC GACVNAPM+ I D YEDLTPE + ++DA + Sbjct: 158 HLGVSNGQTTLDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217 Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + PGP R S + GLT+L N S + D ++ Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259 >gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Sporisorium reilianum] Length = 268 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 93/218 (42%), Positives = 120/218 (55%), Gaps = 7/218 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R + F F+ E+A E+IS YP ++AVIPLL Q Q GWVS + Sbjct: 53 LFVHRNTDYNNPDIPFEFNAENAKMAQEIISHYPSQYKKAAVIPLLDLGQRQNSGWVSIS 112 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +LDM +RV E+ATFYT F PVG +Q+C TTPCML G K++E Sbjct: 113 VMNYVAKLLDMPPMRVYEVATFYTMFNREPVGQ-FFLQLCTTTPCMLGGCGSTKILEALE 171 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 +K+ K D + EVEC GAC NAPM+ I D YEDLTPE + IID ++GQ Sbjct: 172 DKLGIKAGQTTKDKKFTLVEVECLGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQ- 230 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 ++PGPQ R SS A G T+L + GK D Sbjct: 231 -KVKPGPQSGRHSSEAATGRTALT-SEPYGPGKHCVPD 266 >gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Brevundimonas sp. BAL3] gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Brevundimonas sp. BAL3] Length = 225 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 112/217 (51%), Positives = 142/217 (65%), Gaps = 5/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS ++ I +YP SR QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAKE--QPASFAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I + +L M +IRVLE+ATFYT F L PVG A +QVCGTTPCMLRG +L++VC+ KI Sbjct: 59 IRAIGELLGMPFIRVLEVATFYTMFMLEPVGKTALIQVCGTTPCMLRGANELMKVCKEKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K H ++DG +W+EVEC GAC NAPM I +EDLTPE L +IID F+ G+ T Sbjct: 119 GPKD-HLSADGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PG R +S PAGG +LLD + K+ Sbjct: 176 KPGSYQGRATSEPAGGAKTLLDPKLYDGSAAQPIAKL 212 >gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa] gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa] Length = 236 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+ E+ + ++S+YPP A+IP+L AQ Q GW+ +A Sbjct: 25 LVVHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLAQRQHGWLPISA 84 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL +A +RV E+ATFY+ F P+G + VQVCGTTPCMLRG E ++E K+ Sbjct: 85 MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 143 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K SDG + EVEC GACVNAPMV I D YEDLTP+ + +I+D F G+ Sbjct: 144 GIKVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTPKDISDILDEFKAGK--RP 201 Query: 181 RPGPQIDRISSAPAGG 196 +PGP+ R ++ P G Sbjct: 202 KPGPRSGRTAAEPISG 217 >gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234] gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234] Length = 276 Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats. Identities = 148/211 (70%), Positives = 171/211 (81%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE+ QP++F+FS+E+A W I++YP R QSA+IPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L MAYIR LE+ATFYTQFQL PVG+RAHVQVCGTTPCMLRG E LI+VC+ KI Sbjct: 61 IESIADMLGMAYIRALEVATFYTQFQLKPVGSRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 P N GTLSWEEVECQGACVNAPMVMI KD+YEDLTPERLEEIID F G+G I Sbjct: 121 AADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFDAGKGAEI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 PGPQIDRI SAPAGGLT+L + +R K Sbjct: 181 EPGPQIDRIYSAPAGGLTTLQLVEAPQRTKA 211 >gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta] Length = 243 Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats. Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+E + + +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEHDNPNIPFEFNEANKKRIEALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P+G + H+Q+C TPC LR + ++ Sbjct: 91 MHKVAEILGVPNMRVYEVATFYTMFNRKPMG-KYHIQICTCTPCWLRDSDSIVNAVTKAT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + ++D + EVEC GAC NAPM + D YEDLTPE II+A +G+ Sbjct: 150 NCELGGTSADKMFTVSEVECLGACANAPMFQVNDDYYEDLTPETTTAIINALK--KGERP 207 Query: 181 RPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGPQ R ++ PAGGLTSL G + D Sbjct: 208 PPGPQNVSRFAADPAGGLTSLT-TPPPGPGFGVRSD 242 >gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus CB 48] gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus CB 48] Length = 221 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 117/217 (53%), Positives = 141/217 (64%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA QP SF+F E+ N I++YP +R QSAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLA--AVQPDSFAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I VVA +L MA IRV E+ATFYT F L PVG+ A +QVCGTTPC LRG E L++VC++KI Sbjct: 59 IAVVAEMLGMARIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCQLRGSEALMKVCKDKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K ++DG W+EVEC GAC NAPM I YEDLTP+ L +IID FS G+ T Sbjct: 119 GPKD-KLSADGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + GP R +S P GG T+L D S G K KI Sbjct: 176 KTGPYNGRFTSEPLGGATTLKD-PSLYDGSAAKPLKI 211 >gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces stipitis CBS 6054] gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces stipitis CBS 6054] Length = 239 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 81/215 (37%), Positives = 121/215 (56%), Gaps = 3/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R ++ + Q +F F+ E+ +E+I++YPP + AV+PLL Q Q G+ S + Sbjct: 27 ISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ ++ + Sbjct: 87 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDGVMKAIQDHL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ + D YEDLTPE +I+ F G+ Sbjct: 146 KVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPEATVDILKQFQAGK--EP 203 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GP R S P G LL K + D Sbjct: 204 KIGPISGRESCEPHSGAKVLLGAEPTDLRKFTRAD 238 >gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus clavatus NRRL 1] gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus clavatus NRRL 1] Length = 268 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + Sbjct: 39 LAVHRNSPSNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KYFVQLCTTTPCQLGGCGSTKILEAIEE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + H DG + EVEC GACVNAPMV I D YEDLTPE ++ ++ A Sbjct: 158 HLGITSGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217 Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +G+ PGP R + + GLT+L D +KD + Sbjct: 218 AESGKSVKVPAPGPLSGRQTCENSAGLTNLQDPVWDPETMMRKDGAL 264 >gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3] Length = 195 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 146/195 (74%), Positives = 171/195 (87%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP R QSAVIPLLMRAQEQ+GWV+RAA Sbjct: 1 MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI Sbjct: 61 IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180 Query: 181 RPGPQIDRISSAPAG 195 +PG QIDRI SAP G Sbjct: 181 KPGTQIDRIFSAPEG 195 >gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei] gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei] Length = 254 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 113/221 (51%), Gaps = 18/221 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + ++ YP A+IPLL AQ Q GW+ +A Sbjct: 27 LMVHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +R E+ATFYT F PVG + +QVC TTPCMLRG E + E K+ Sbjct: 87 MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP---------------ERL 165 DG + EVEC GACVNAPM+ I D +EDLTP + + Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKVFFLFELCFFISIIQDV 205 Query: 166 EEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 EI+D G+ GP+ R+++ P G LTSL + Sbjct: 206 HEILDDLKAGR--KPAAGPRSGRLAAEPFGELTSLKETPPG 244 >gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger] Length = 269 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQYKKAAVMPVLDVGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A Sbjct: 158 HLGITPGHTTEDGLFTFVEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217 Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 GQ PGP R + + GLT+L++ +KD + Sbjct: 218 TEAGQTVKVPAPGPLSGRDTCENSAGLTNLIEPVWDPATMMRKDGAL 264 >gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori] gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori] Length = 245 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R E+ F FS+ + V +++ YP + A+IPLL AQ Q G W+ + Sbjct: 31 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA IL++ +RV E+ATFYT F P+G + HVQVC TTPC LRG + ++ + + Sbjct: 91 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + G S EVEC GACVNAPM+ + D YEDL+ E +EII + + Sbjct: 150 TNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEK 207 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R +S P GGLTSL + + G +D Sbjct: 208 PKPGPRSGRFASEPLGGLTSLTEEPTG-PGFGVQDA 242 >gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus Af293] gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus fumigatus Af293] gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus fumigatus A1163] Length = 268 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + Sbjct: 39 LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESATA 217 Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + PGP R S + GLT+L + +KD + Sbjct: 218 AESGKEVKVPAPGPLSGRHSCENSAGLTNLQNPVWDPETMMRKDGAL 264 >gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255] Length = 250 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 124/213 (58%), Positives = 155/213 (72%), Gaps = 3/213 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+FSEE+ W + I++YP R SA I +L RAQEQ G W+S A Sbjct: 1 MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++ Sbjct: 61 AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H + DG SWEEVEC G+CVNAPMV+I KDTYEDLT E +++D F++GQ Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQIDR SAP GG T+L G++ Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAKGDGGRRS 211 >gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Acromyrmex echinatior] Length = 243 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E++ F F+E + ++ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEQDNPNIPFEFNEANKKRIDALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ILD+ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++ Sbjct: 91 MHKVAEILDVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDSIVNAVTKAT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + ++D + EVEC GAC NAPM + D YEDLTPE II+AF +G+ Sbjct: 150 NCELGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATTIINAFK--KGERP 207 Query: 181 RPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGPQ R ++ PAGGLTSL G + D Sbjct: 208 PPGPQNCSRFAADPAGGLTSLT-TPPPGPGFGIRSD 242 >gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus clemensi] Length = 238 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ + Sbjct: 26 IFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPIS 85 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+++ M +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ Sbjct: 86 AMNHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILQACKDN 144 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + D + EVEC GACVNAPMV I D YEDLT + + EI+D G+ Sbjct: 145 LGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--K 202 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP+ R ++ P GG TSL + G + D Sbjct: 203 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 237 >gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Apis mellifera] Length = 243 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E + F F+E + + ++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDSEVDNPSIPFEFNEANKKRIEALLKIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++E Sbjct: 91 MHKVAEILNIPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKVT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + K ++D + EVEC GAC NAPM + D YEDLTPE II+AF +G+ Sbjct: 150 NCKVGEMSADKLFTVSEVECLGACANAPMFQVNDDYYEDLTPESAISIINAFK--KGERP 207 Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGPQ R ++ PAGGLTSL + G + D Sbjct: 208 PPGPQNSPRFAADPAGGLTSLT-SPPPGPGFGVRSD 242 >gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43] gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43] Length = 395 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 144/220 (65%), Positives = 163/220 (74%), Gaps = 2/220 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAEE QP+ F+F+ E A I +YP R QSAVIPLLM AQEQ+GWV++ A Sbjct: 1 MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A++L M YIR LE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E+L+EVCR+KI Sbjct: 61 IETIADMLGMPYIRALEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEELMEVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P H N GTLSWEEVECQGACVNAPMVMI KD YEDLTPERL IID F G+ + I Sbjct: 121 HPEPFHLNESGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLAYIIDRFDAGRPEDI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDN--NSKKRGKKKKDDKIS 218 GPQI R SAPA GLTSL + KR K K S Sbjct: 181 NTGPQIKRTFSAPASGLTSLTEEIKPGSKRAAKSTKAKAS 220 >gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya fischeri NRRL 181] gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya fischeri NRRL 181] Length = 268 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R F FSE++ V+E++ RYPP + AV+PLL Q Q G+ S + Sbjct: 39 LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ ++ A Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKTLLTALKESATA 217 Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + PGP R + + GLT+L + +KD + Sbjct: 218 AESGKEVKVPAPGPLSGRHTCENSAGLTNLQNPVWDPETMMRKDGAL 264 >gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus] Length = 192 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+AT Sbjct: 1 KNYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVAT 60 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC Sbjct: 61 FYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVEC 119 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 GACVNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL Sbjct: 120 LGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSL 177 Query: 201 LDNNSKKRGKKKKDD 215 + K G + Sbjct: 178 TE-PPKGPGFGVQAG 191 >gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 418 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 143/210 (68%), Gaps = 5/210 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 M+VRRLA E QP SF F+EE+ W ++I RYP R SAVIPLL RAQEQ GWVS Sbjct: 1 MAVRRLAAE--QPDSFEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++ Sbjct: 59 AIRYIADLLDMPNIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + + DG SWEEVEC GACVNAPMV I KDTYEDLT E +++D G + Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDAG--ND 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 + PGPQ R S GG TSL + +G Sbjct: 177 VTPGPQNGRRFSMAEGGQTSLTEIEDDTKG 206 >gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45] gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45] Length = 389 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F+ + W I+++P R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPD--QPDSFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E L+ VC+ +I Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCKERIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT RL EI+D S G+ P Sbjct: 120 KPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDGR--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GGLTSL D+ S + Sbjct: 178 GPQNGRYASEPLGGLTSLTDHESGR 202 >gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8] gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8] Length = 257 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 5/214 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R F F+ E+ E+I+RYPP ++AVIPLL Q Q GW S + Sbjct: 44 LFVHRDTPYNNPKIPFEFNAENLKRAEEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSIS 103 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 + VA +L M +RV E+ATFYT F P+G VQVC TTPCMLRG ++ N+ Sbjct: 104 VMNYVARLLGMPPMRVYEVATFYTMFNREPIGEHF-VQVCTTTPCMLRGSTDILNTVCNE 162 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 ++ KP + DG + EVECQGAC NAPM+++G D YEDLTPE + I+ AFS +G+ Sbjct: 163 LNVKPGGTSKDGKFTVVEVECQGACSNAPMMVVGDDFYEDLTPESTKRILAAFS--KGEK 220 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 + GPQ +R +S + GLT+L + G+ Sbjct: 221 PKAGPQSNRQTSENSAGLTALT-SKPYGPGEFCT 253 >gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009] gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1] gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris CGA009] gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris TIE-1] Length = 249 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 120/202 (59%), Positives = 149/202 (73%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ G W+ A Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+ Sbjct: 61 AIRTVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F++G + Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 PGPQ R +AP G T+L Sbjct: 179 PTPGPQNGRQHAAPMTGPTTLK 200 >gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b [Rattus norvegicus] Length = 227 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT Sbjct: 40 RIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 99 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GAC Sbjct: 100 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 158 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204 VNAPMV I D YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL + Sbjct: 159 VNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 215 Query: 205 SKKRGKKKKDD 215 K G + Sbjct: 216 PKGPGFGVQAG 226 >gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea okayama7#130] gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea okayama7#130] Length = 245 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 6/214 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R F F + E+I+RYPP ++AVIPLL Q Q GW S + Sbjct: 31 LFVHRDTPYNNPKIPFEFDAANMKRAQEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSIS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 + VA +L+M +RV E+ATFYT F P+G +Q+C TTPCML G ++ Sbjct: 91 VMNYVAKLLEMPAMRVYEVATFYTMFNREPIGQNF-IQLCTTTPCMLCGSTNILNTISEH 149 Query: 120 IH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + KP DG + EVECQGAC NAPM+++ D YEDLTPE ++I+DAF+ G+ Sbjct: 150 LGGIKPGQTTKDGKFTLVEVECQGACSNAPMMVVNDDYYEDLTPESTKKILDAFARGE-- 207 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQ R +S + GLT+L G+ Sbjct: 208 KPKPGPQSSRHTSENSAGLTNLT-GKPYGPGEFC 240 >gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2] gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris HaA2] Length = 249 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 119/202 (58%), Positives = 152/202 (75%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+F+EE+ W I++YPP+R SAVI ++ RAQEQ G W+ A Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V++++L+M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++ Sbjct: 61 AIRVISDMLEMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F+ G + Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAAG--NP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 +PGPQ R +AP G T+L Sbjct: 179 PKPGPQNGRQYAAPITGPTTLK 200 >gi|289619209|emb|CBI54477.1| unnamed protein product [Sordaria macrospora] Length = 271 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 6/208 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R + F FS E+ + E+I RYPP ++AV+PLL Q Q G+ S + + Sbjct: 57 HRNTPDNNPDIPFKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNE 116 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121 VA +L+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + + Sbjct: 117 VARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLG 175 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGD 178 K DG ++ EVEC GAC NAPMV I D +EDLTPE + +++ A T Sbjct: 176 IKQGETTPDGLFTFLEVECLGACANAPMVQINDDYFEDLTPETITQVLVALKESVTDASK 235 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSK 206 +PGPQ R + A GLTSL Sbjct: 236 APKPGPQSGRQTCENAAGLTSLTSEPYG 263 >gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus flavus NRRL3357] gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae] gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus flavus NRRL3357] Length = 270 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 122/227 (53%), Gaps = 11/227 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R F+F+E++ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G K++E + Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + P H DG + EVEC GACVNAPMV I D YEDLTPE ++ ++ A Sbjct: 158 HLGITPGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATA 217 Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 G+ PGP R + + GLT+L + +KD + Sbjct: 218 TDAGKTVQIPAPGPMSGRNTCENSAGLTNLKNPVWDPETMMRKDGAL 264 >gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum centenum SW] gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum centenum SW] Length = 210 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 95/189 (50%), Positives = 128/189 (67%), Gaps = 4/189 (2%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 SFSF++E+ +I++YPP R QSAV+PLL AQ Q G W+SR AIE VA++L+M I Sbjct: 12 SFSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRPAIEYVADMLEMPRI 71 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R +E+A+FYT + L PVG + VQVC TTPC LRG + ++ C K+ K +DG Sbjct: 72 RAMEVASFYTMYNLKPVG-KHFVQVCTTTPCWLRGSDDILHTCEKKLGIKAGETTADGQF 130 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + E EC GACVNAPMV IG +EDLTPE +E I+DA + + +T +PGPQ RI+S P Sbjct: 131 TVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALA--RDETPKPGPQNGRIASCP 188 Query: 194 AGGLTSLLD 202 +GG T+L + Sbjct: 189 SGGPTTLTE 197 >gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa OR74A] gi|730212|sp|P40915|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial; Flags: Precursor gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa] gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24) [Neurospora crassa] gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa OR74A] gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD Length = 263 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 6/211 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FS ++ + E+I RYPP ++AV+PLL Q Q G+ S + Sbjct: 46 LMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISV 105 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + Sbjct: 106 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKE 164 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + K DG ++ EVEC GAC NAPMV I D +EDLTPE +++++ A D Sbjct: 165 HLGIKQGETTPDGLFTFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTD 224 Query: 179 T---IRPGPQIDRISSAPAGGLTSLLDNNSK 206 +PGPQ R + A GLTSL Sbjct: 225 VSKAPQPGPQSGRQTCENAAGLTSLTSEPYG 255 >gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus clemensi] Length = 238 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R + E + F F+ E+ ++S YP ++A +PLL AQ Q G W+ + Sbjct: 26 IFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPIS 85 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+++ M +RV E+ATFYT F +PVG + HVQVC T PC LRG +++++ C++ Sbjct: 86 AMNHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTAPCWLRGSDEILQACKDN 144 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + D + EVEC GACVNAPMV I D YEDLT + + EI+D G+ Sbjct: 145 LGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--K 202 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP+ R ++ P GG TSL + G + D Sbjct: 203 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 237 >gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola granulosus HTCC2516] gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola granulosus HTCC2516] Length = 425 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 117/207 (56%), Positives = 143/207 (69%), Gaps = 4/207 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHHE--QPESFAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L MAYIR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E+L+E+C+ KI Sbjct: 60 AVAEMLGMAYIRALEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEELMELCKTKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLTP +LE ++D + G+ P Sbjct: 120 RPHELSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGR--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209 GPQ R +S PA GLTSL + G Sbjct: 178 GPQNGRYASEPASGLTSLKAYEEGRDG 204 >gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus salmonis] Length = 240 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ + Sbjct: 28 IFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPIS 87 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ Sbjct: 88 AMNYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDN 146 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + D + EVEC GACVNAPMV I D YEDLT + ++EI++ G Sbjct: 147 LGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKVG--TK 204 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP+ R ++ P GG TSL + G + D Sbjct: 205 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 239 >gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus] Length = 238 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + ++ YP +AV+P+L AQ Q GW+ +A+ VA +L + +RV E+ATFYT Sbjct: 51 RIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 110 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + PVG + H+QVC TTPCMLR + ++E + K+ K D + EVEC GAC Sbjct: 111 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 169 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204 VNAPMV I + YEDLTP+ +EEIID G+ +PGP+ R PAGGLTSL + Sbjct: 170 VNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 226 Query: 205 SKKRGKKKKDD 215 K G + Sbjct: 227 PKGPGFGVQAG 237 >gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255] Length = 268 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 118/223 (52%), Gaps = 9/223 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R F FSE++ +E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 38 LSVHRNKVNNNPSLPFKFSEQNLKLADEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +++ Sbjct: 98 MNEVARMLEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSTAIVKAITE 156 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + P H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ I+ A Sbjct: 157 HLGITPGHTTEDGLFTFTEVECLGACVNAPMVQINDDYYEDLTPESIKTILTALKDSATA 216 Query: 174 TGQGDT-IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 TG G PGP R + + GLT+L D + D Sbjct: 217 TGAGAKIPAPGPLSGRDTCENSAGLTNLTDVPEWNPETMMRKD 259 >gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720] gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720] Length = 237 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 2/215 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ Q F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 24 ISVHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISV 83 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + + Sbjct: 84 MNYVAKMLDMPPMRVYEVATFYTMYMRHPMG-KYNIQVCTTTPCQLCGSDEIMKAVTDFL 142 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ +G D +EDLTPE+ E++ G+ Sbjct: 143 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVGDDYHEDLTPEKTVELLQKLKDGK-PVE 201 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GP R S P G L K + D Sbjct: 202 KAGPVSGRHSCEPLSGRKVLKAAEPTDIRKFTRAD 236 >gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus humanus corporis] gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus humanus corporis] Length = 242 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 4/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ +F F+ E+ +++ YP ++A++PLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPDVNFDFTPENMKRAEAIMAIYPEGHKRAALLPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++ +RV E+ATFYT + P+G + H+QVC TTPC LR + ++ V + K+ Sbjct: 91 MHKVAEILNLPKMRVYEVATFYTMYMRKPMG-KYHIQVCTTTPCWLRDSDSIMNVIKKKL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + D + EVEC GACVNAPMV I D YEDLT E + +I++ + G+ Sbjct: 150 NINVGETTKDKLFTLSEVECLGACVNAPMVQINDDYYEDLTEESMNQILEDLANGR--KP 207 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GPQ R S P GGLTSL G + D Sbjct: 208 KAGPQSGRCSCEPHGGLTSLTTEPPG-PGVGVRSD 241 >gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 224 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 7/209 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA E QP+SF+FS E+ W + I++YP R SAVIPLL +AQEQ G W+ Sbjct: 1 MSVRRLAAE--QPASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VVA+ L MAYIRVLEIATFYT F L PVG R VQ+CGTTPC LRG +KL EVC K Sbjct: 59 AIRVVADKLGMAYIRVLEIATFYTMFNLEPVG-RHFVQLCGTTPCALRGADKLKEVCHRK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + H DG LSW EVEC GAC NAPMV + D +EDLTPE LE+++D G+ Sbjct: 118 IGPER-HVTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 ++ G Q R +SAP GG TSL D + R Sbjct: 175 VKTGSQTGRQASAPEGGRTSLTDPSLYNR 203 >gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583] gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis KC583] Length = 225 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 163/206 (79%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP FSF++E+ +W I++YP R QSAVIPLLMRAQEQEGWV+RAA Sbjct: 1 MSVRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE +A +L MAYIRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG +LI++C+ KI Sbjct: 61 IEHIAQMLSMAYIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSTELIKICQKKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H +P N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF +G + Sbjct: 121 HPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEANKGFEV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206 GPQ R SS P GLTSL++ + Sbjct: 181 AVGPQNSRKSSEPINGLTSLINEDED 206 >gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767] gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii] Length = 238 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 3/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +S+ R +E+ + SF F+ E+ NE+I++YPP ++AV+PLL Q Q G+ S A Sbjct: 26 ISIHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAV 85 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA LDM +RV E+ATFYT + P+G + ++QVC TTPC L G +++++ + + Sbjct: 86 MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDEVMDAITSHL 144 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ + D +EDLT E+ +++ G+ Sbjct: 145 KIKPGQTTPDKLFTLQEVECLGACVNAPMLALNDDFHEDLTAEKTIDLLKTLQAGK--EP 202 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GP R + P G LL + D Sbjct: 203 KAGPVSGRDTCEPFSGAKVLLGEKPFDVSTVTRSD 237 >gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica] gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica] gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica] Length = 243 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 118/216 (54%), Gaps = 4/216 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 SV R E F FS E+ EVI++YPP ++AV+PLL Q Q G+ S + + Sbjct: 31 SVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVM 90 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA +L+M +RV E+ATFYT + +P+G R H+Q+C TTPC L G + ++E +N ++ Sbjct: 91 NYVAKLLEMPPMRVYEVATFYTMYNRTPMG-RYHLQICTTTPCQLCGSDGIMEAVQNTLN 149 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 KP D + EVEC GACVNAPM+ I D YEDLTPE ++++ G+ T Sbjct: 150 IKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPT-- 207 Query: 182 PGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 PGP+ R PA G LL ++ Sbjct: 208 PGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI 243 >gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601] gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Roseovarius sp. HTCC2601] Length = 382 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 116/206 (56%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F++ + W IS+YP R SAVIPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPESFAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDMAYIRVLE+ATFY FQL PVG+ AHVQ+CGTT CM+ G E L+ VC++KI Sbjct: 60 AVAEMLDMAYIRVLEVATFYFMFQLQPVGSVAHVQICGTTTCMICGAEDLMAVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P Sbjct: 120 KAHEVSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R SS P GG L ++ + Sbjct: 178 GPQNGRYSSEPKGGPVVLTEHVEGRA 203 >gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5] gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisB5] Length = 249 Score = 283 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 120/202 (59%), Positives = 150/202 (74%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RAQEQ G W+ A Sbjct: 1 MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V+ ++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+++ Sbjct: 61 AIRVIGDMLGMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH PLH ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F +G + Sbjct: 121 IHHDPLHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVSG--NK 178 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 +PGPQ R +AP G T+L Sbjct: 179 PKPGPQNGRQYAAPISGPTTLK 200 >gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris DX-1] gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris DX-1] Length = 249 Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 122/222 (54%), Positives = 152/222 (68%), Gaps = 8/222 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLA +E QP SF+F+ E+ W + I++YPP R SAVI ++ RAQEQ G W+ A Sbjct: 1 MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG +LIEVC+N+ Sbjct: 61 AIRAVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMV I KD YEDLTPE L +++D F++G Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGH--P 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLD-----NNSKKRGKKKKDDK 216 +PGPQ R +AP G T+L G DD+ Sbjct: 179 PQPGPQNGRQHAAPITGPTTLKTGGINVAPIDANGPALTDDE 220 >gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magnetotacticum MS-1] Length = 202 Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 98/202 (48%), Positives = 128/202 (63%), Gaps = 8/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS ++P SF+F+ E I++YP R QSAV+PLL AQ QEGWVSRAA Sbjct: 1 MSNHS-----YEPESFAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAA 55 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +EV+A +LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG ++++ + + Sbjct: 56 MEVIAEMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDEVVAAAKAAL 114 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + +DG + EVEC GACVNAPM+ I D YEDL+ E + +++AF G+ T Sbjct: 115 GVEFGEMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFKRGE--TP 172 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGPQ R S PAGG TSL + Sbjct: 173 KPGPQNGRQFSCPAGGPTSLTE 194 >gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12] gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL 12] Length = 402 Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP+ F+F+ E+ W ++++P R SA+IP+L RAQEQEGW+S+ AIE Sbjct: 2 LRRLHAE--QPADFAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++LDM YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E L+ VC+ KI Sbjct: 60 YVADMLDMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCMICGAEDLVAVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++D + G+ P Sbjct: 120 RAHQLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGE--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R +S PAGGLTSL + + K Sbjct: 178 GPQNGRYTSEPAGGLTSLTEYEAGKD 203 >gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101] gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101] Length = 421 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L +AYIR LE+ATFY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI Sbjct: 60 HVSEMLGLAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + DG SWEEVEC GAC NAPM IGKD YEDLT E +ID + G+ P Sbjct: 120 KAHQISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL D +S K Sbjct: 178 GPQNGRYASEPLSGLTSLTDYDSGK 202 >gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37] gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37] Length = 242 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 112/201 (55%), Positives = 139/201 (69%), Gaps = 4/201 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF F+E + W E I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL P G+ AH+Q+CGTT CM+ G E L+ VCR+KI Sbjct: 60 YVSEMLGMAYIRGLEVATFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLMAVCRDKISA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP + DG SWEEVEC GAC NAPM IGKD YEDLT E+L ++DA +G+ +P Sbjct: 120 KPHTLSEDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDALD--KGEVPQP 177 Query: 183 GPQIDRISSAPAGGLTSLLDN 203 GPQ R +S P GG T+L + Sbjct: 178 GPQNGRFASEPLGGATTLTEY 198 >gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magneticum AMB-1] gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magneticum AMB-1] Length = 202 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 99/202 (49%), Positives = 128/202 (63%), Gaps = 8/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS ++P SF+F+ E +++YP R QSAV+PLL AQ QEGWVSRAA Sbjct: 1 MSNHS-----YEPESFAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAA 55 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +EV+A +LDMA IRV E+ATFYT + PVGT HVQVC PCMLRG + ++ + + Sbjct: 56 MEVIAEMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDDVVAAAKAAL 114 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + +DG + EVEC GACVNAPM+ I D YEDLTPE + +++AF G+ T Sbjct: 115 GVEFGDMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFKRGE--TP 172 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 +PGPQ R S PAGG TSL + Sbjct: 173 KPGPQNGRQFSCPAGGPTSLTE 194 >gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase, E subunit subfamily [polymorphum gilvum SL003B-26A1] gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Polymorphum gilvum SL003B-26A1] Length = 378 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 120/211 (56%), Positives = 144/211 (68%), Gaps = 5/211 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 M+VRRLA E QP F+F+ ++ W +VI RYP R SAVIPLL RAQEQ GWV Sbjct: 1 MAVRRLAAE--QPDHFAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L M +IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI VC++K Sbjct: 59 AIRYIADMLGMPHIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGAEDLIRVCKSK 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I ++DG SWEEVEC GACVNAPMV I KDTYEDLTPE LE++I+ + G+ Sbjct: 119 IAAHAHDLSADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGR--E 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 + PGPQ R S P GG TSL + G Sbjct: 177 VTPGPQNGRRFSMPEGGATSLTEIEDDTAGA 207 >gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114] gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh 114] Length = 359 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHPD--QPDSFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E L+ VC+ KI + Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLVAVCQEKIAR 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202 >gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton tonsurans CBS 112818] gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum CBS 127.97] Length = 267 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 40 LHVHRNTPSNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176 + DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218 Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267 >gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6] gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6] Length = 384 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W +++YP R SAVIPLL RAQEQEGWVS+ A+E Sbjct: 2 LRRLHSE--QPESFAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQ+ P G+ AHVQ+CGTT CM+ G E L+ +C+ KI + Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLVAICKEKIAE 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E ++D + G+ + P Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGK--KVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202 >gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371] gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371] Length = 267 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 40 LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176 + DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218 Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267 >gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+] gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+] Length = 260 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F F++++ + E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 43 LMVHRNTPDNNPSIPFKFTDQNEKIITEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 102 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + Sbjct: 103 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKE 161 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG--- 175 + K DG ++ EVEC GACVNAPMV I + YEDLTPE ++++ A Sbjct: 162 HLGIKQGETTPDGLFTFIEVECLGACVNAPMVQINDEYYEDLTPETTKQLLTALKESLND 221 Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGP R + + GLT+L + Sbjct: 222 ASKAPKPGPVSGRDTCENSAGLTNLTSEPWGVETTRS 258 >gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS 118892] gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum CBS 118892] Length = 267 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 40 LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176 + DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALRASAV 218 Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267 >gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC 6260] gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC 6260] Length = 251 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 3/215 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R + + F F+ ++ E+I++YPP ++AV+PLL Q Q G+ + + Sbjct: 39 ISVHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + H+QVC TTPC L G +++++ +N + Sbjct: 99 MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYHLQVCTTTPCQLCGSDEVMDAIKNHL 157 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + EEVEC GACVN PM+ + D EDLT E+ E++ G+ + Sbjct: 158 KIKPGQTTPDNLFTLEEVECLGACVNGPMMGVNDDYAEDLTGEKTVELLKNLQEGK--PM 215 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP R S P G LL K + D Sbjct: 216 HVGPVSGRDSCEPFSGPKVLLSKEPHDIRKVTRSD 250 >gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040] gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040] Length = 398 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGW+S+ AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL P G+ AH+Q+CGTT CM+ G E L+ +C++KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP + DG SWEEVEC G+C NAPM IGKD YEDLT +++D + G+ + P Sbjct: 120 KPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGK--PVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GLTSL + + K Sbjct: 178 GPQNGRYAAEPKAGLTSLTEYEAGKP 203 >gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides posadasii str. Silveira] Length = 264 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173 + D + EVEC GACVNAPMV I D YEDLTPE ++++A Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217 Query: 174 TGQGDT----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 G+ PGP R S + GLTSL + +KD ++ Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLT-SPLWSTETLRKDGEL 264 >gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS] Length = 264 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F FSE++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173 + D + EVEC GACVNAPMV I D YEDLTPE ++++A Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217 Query: 174 TGQGDT----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 G+ PGP R S + GLTSL + +KD ++ Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLT-SPLWSTETLRKDGEL 264 >gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407] Length = 272 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 9/220 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FS ++ + E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 52 LQVHRNTADNNPDIPFQFSADNKNVIQEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 111 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + Sbjct: 112 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDVIVKAIKE 170 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + K +DG ++ EVEC GACVNAPM+ I YEDLTPE ++ ++ Sbjct: 171 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDHYYEDLTPETVKSLLSGLKAAALD 230 Query: 175 --GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 G+ + GP R S + GLTSL D + Sbjct: 231 PSGKTPEPKVGPTTGRHSCENSAGLTSLTDKPWGVETTRS 270 >gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53] gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisA53] Length = 249 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 122/203 (60%), Positives = 151/203 (74%), Gaps = 3/203 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRRLA +E QP SF+F++E+ W ++ +++YPP R SAVI ++ RAQEQ G W+S A Sbjct: 1 MAVRRLAPKELQPESFAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++LDM +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+ Sbjct: 61 AIRAVADLLDMPHIRALEIATFYTMFQLHPVGRKAHVQVCGTTPCRLRGAEDIIKVCQNR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH P H ++DG SWEEVEC GACVNAPMVMIGKDTYEDLTPE +++D G G Sbjct: 121 IHHDPSHLSADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGI--GSGHP 178 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PGPQ R +AP GG L D Sbjct: 179 PKPGPQGGRQFAAPEGGPRVLKD 201 >gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062] gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062] Length = 266 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 5/211 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRL E QP SF FS E+ W +VI RYP R SAV+P+L RAQEQ GWV+ A Sbjct: 1 MSVRRLHHE--QPESFEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I V++ +LDM IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E+LI+VC++KI Sbjct: 59 IRVISEMLDMPRIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEELIKVCKSKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + P + DG SWEEVEC GACVNAPMV I KD YEDL E+ E+++D + G+ + Sbjct: 119 SETPHTLSEDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGK--PV 176 Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRGK 210 PGPQ +DRI +AP GG T+LL+ +G Sbjct: 177 LPGPQGVDRIFAAPEGGPTTLLNIEDTTKGA 207 >gi|163732061|ref|ZP_02139507.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149] gi|161394359|gb|EDQ18682.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149] Length = 359 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP +F+F+ E+ W I++YP R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHPD--QPETFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L ++YIR LE+ATFY FQL PVG AH+QVCGTT CM+ G E LI VC+ KI + Sbjct: 60 HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLISVCQEKIAR 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P + DG SWEEVEC G+C NAPM IGKD YEDLT R+ EIID + G+ P Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL++ +S K Sbjct: 178 GPQNGRYAAEPLKGLTSLIEYDSGK 202 >gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Lepeophtheirus salmonis] Length = 240 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 81/216 (37%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 + V R + E + F F+ ++ ++S YP ++A +PLL AQ Q G W+ + Sbjct: 28 IFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPIS 87 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+ +DM +RV E+ATFYT F +PVG + HVQVC TTPC LRG +++++ C++ Sbjct: 88 AMNYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDN 146 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + D + EVEC GACVNAPMV I D YEDLT + ++EI++ Sbjct: 147 LGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKV--DTK 204 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP+ R ++ P GG TSL + G + D Sbjct: 205 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 239 >gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides ATCC 15264] gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 115/218 (52%), Positives = 151/218 (69%), Gaps = 7/218 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA++ QP+SF+FS+E+ V+ I++YP R +SAVIP+L Q+QEGWVS A Sbjct: 1 MSVRRLAKD--QPASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A+ LDMAYIRVLE+ATFYT F L PVG+ A +QVCGTTPCMLRG +L++VC+++I Sbjct: 59 IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSGELMKVCKSRI 118 Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +K ++DG WEEVEC GACVNAPM MI +EDLT L +IID F+ G+ Sbjct: 119 GEK--QTLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDDFAAGK--A 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PG +IDR++SAP GG +L D K K+ Sbjct: 175 PKPGTRIDRVNSAPEGGPLTLTDPGLYDGTAAKPISKL 212 >gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51] Length = 262 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 9/214 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F F++++ + EV+ RYPP ++AV+PLL Q Q G+ S + Sbjct: 42 LMVHRNTPDNNPDIPFKFTKQNEAIITEVLKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 101 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+A+FYT + +PVG + HVQ C TTPC L G + +++ + Sbjct: 102 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKE 160 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + K +DG ++ EVEC GACVNAPM+ I D YEDLTPE ++ ++ A Sbjct: 161 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETIKSLLTALKESVTD 220 Query: 175 -GQ-GDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 G+ +PGP R + + GLT+L Sbjct: 221 VGKAAKVPKPGPLSGRDTCENSAGLTNLTSEPWG 254 >gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 267 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 40 LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158 Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176 + DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218 Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 219 AAENGTQSSVKIPAPGPLSGRQTCENSAGLTSLTE-PLWGNETLRKDGEL 267 >gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] Length = 215 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 124/191 (64%), Gaps = 4/191 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70 +P+SF+F+ ++ +I++YP + SA +PLL AQ Q G W+ R A++ VA++L M Sbjct: 12 EPTSFTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGM 71 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 IRV E+ATFYT + +PVG R H+QVC TTPC LRG + ++ C+ K+ +D Sbjct: 72 PRIRVYEVATFYTMYNKNPVG-RHHIQVCTTTPCWLRGSDDVVHACKRKLGIGMGETTAD 130 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 G + EVEC GACVNAP+V IG D YED+ PE +E I+DA + G+ T +PG QI R S Sbjct: 131 GQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALARGE--TPKPGSQIGRQS 188 Query: 191 SAPAGGLTSLL 201 S P GG T+L Sbjct: 189 SEPVGGPTTLK 199 >gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var. neoformans B-3501A] gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 249 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 7/215 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R + F F+ E+ +E+I+RYPP ++A +P+L Q Q GW S + Sbjct: 34 LFVHRDTDYNNPSIPFEFTPENLKRAHEIIARYPPQYKKAAALPILDLGQRQNKGWTSIS 93 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +LDM +RV E+ATFYT + PV VQ+C TTPC L G K++E Sbjct: 94 VMNAVAKLLDMPKMRVYEVATFYTMYNREPVAPNF-VQLCTTTPCQLGGCGSTKILETIE 152 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + + P DG ++ EVEC GAC NAPM+ IG D YEDLTPE +I+DA + G+ Sbjct: 153 SHLGVHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDDYYEDLTPETTVKILDALARGE- 211 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 +PGPQ R +S + GLT+L G+ Sbjct: 212 -KPKPGPQSGRQTSENSAGLTTLT-TKPYGPGEFC 244 >gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii ATCC 17100] gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii ATCC 17100] Length = 341 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 110/209 (52%), Positives = 135/209 (64%), Gaps = 7/209 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MSVRRL + QPS F F+ E+ W E I +YP R Q+AV+PLL RAQEQ W+ Sbjct: 1 MSVRRL--DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V ++L M YIRV E+ATFY+ F LSPVG R HVQVCGTTPCMLRG E + +VC+ + Sbjct: 59 AIRYVGDLLGMPYIRVYEVATFYSMFNLSPVG-RYHVQVCGTTPCMLRGAEDIKKVCKRE 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I +G SW EVEC GACVNAPMV I D YEDLTPE E ++ G+ Sbjct: 118 IG-DEREVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGR--E 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 ++PG QI R SAP GG T+LL + +K+ Sbjct: 175 VKPGSQIGRQCSAPEGGPTTLLFEDEEKQ 203 >gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC 21756] gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC 21756] Length = 229 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS+ES + ++YP +R QSAVIP+L AQ+QEGW+S A Sbjct: 1 MSVRRLAKE--QPASFTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V ++KI Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKDKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ + Sbjct: 119 G-EANHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PG R++S P G + +L D G K KI Sbjct: 176 KPGSYDGRVASEPKGKIQTLTD-PKLYDGSAAKKIKI 211 >gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium Y4I] gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium Y4I] Length = 389 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGWV++ AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A++L MAYIRVLE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VCR KI Sbjct: 60 AIADMLGMAYIRVLEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ + P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--LVAP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGK 202 >gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193] gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193] Length = 383 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W ++++P R SAVIPLL RAQEQEGWVS+ AIE Sbjct: 2 LRRLHSE--QPESFAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A++L MAYIRVLE+ +FY FQ+ P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YIADMLGMAYIRVLEVCSFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + G+ + P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGK--KVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202 >gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1] Length = 260 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 10/221 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ + E++ RYPP ++AV+PLL Q Q G+ S + Sbjct: 39 LMVHRNTEDNNPDIPFKFNAENQKVMAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + VQ+C TTPC L G + +++ + Sbjct: 99 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQICTTTPCQLGGCGSDVIVKAIKE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 ++ + +DG + EVEC GACVNAPM+ I D YEDLTP +++++ + + Sbjct: 158 ELGIEQGQTTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPASVKDLLKSLRSKATA 217 Query: 179 T-------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 T +PGP R + GLTSL +K Sbjct: 218 TDPSTVNVPKPGPLSGRKDCENSAGLTSLTSEPWGTETTRK 258 >gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Camponotus floridanus] Length = 323 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 5/213 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R +E + F F E + + +++ YP + A+IPLL AQ Q GW+ +A+ Sbjct: 114 HRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 173 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA IL++ +RV E+ATFYT F P+G + HVQ+C TPC LR + +++ + + Sbjct: 174 VAEILEVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDAIVKAVTAATNCE 232 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++D + EVEC GAC NAPM + D YEDLTPE +I+AF +G+ PG Sbjct: 233 IGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVINAFK--KGERPPPG 290 Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PQ R ++ PAGGLTSL + G + D Sbjct: 291 PQNAPRFAADPAGGLTSLT-SPPPGPGFGVRSD 322 >gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Cryptococcus gattii WM276] gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Cryptococcus gattii WM276] Length = 249 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 7/216 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R + F F+ E+ +E+ISRYPP ++A +P+L Q Q GW S + Sbjct: 34 LFVHRDTDYNNPSIPFEFTPENLKRAHEIISRYPPQYKKAAALPILDLGQRQNKGWTSIS 93 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +LDM +RV E+ATFYT + PV VQ+C TTPC L G K++E Sbjct: 94 VMNAVAKLLDMPRMRVYEVATFYTMYNREPVAPNF-VQLCTTTPCQLGGCGSTKILETIE 152 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + + P DG ++ EVEC GAC NAPM+ IG + YEDLTPE +I+D + G+ Sbjct: 153 SHLGIHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDEYYEDLTPETTIKILDTLARGE- 211 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 +PGPQ R +S + GLT+L G+ Sbjct: 212 -KPKPGPQSGRQTSENSAGLTTLT-TKPYGPGEFCT 245 >gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Nasonia vitripennis] Length = 243 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 118/216 (54%), Gaps = 5/216 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E++ F F + + ++ YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTEQDNPNIPFEFDAANKKRIEAILKIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL ++ +RV E+ATFYT F P+G + HVQVC TPC LR + +++ + Sbjct: 91 MHKVAEILGVSNMRVYEVATFYTMFNRRPMG-KYHVQVCTCTPCWLRDSDSIMKAVKELT 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + + + D S EVEC GAC NAPM+ + D YEDLTPE II+A G+ Sbjct: 150 NCEVGGNSPDNMFSISEVECLGACANAPMLQVNDDYYEDLTPETTATIINALKRGE--RP 207 Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGPQ +R ++ P GGLTSL + K+ + D Sbjct: 208 APGPQCKNRYAAEPNGGLTSLT-SPPKEPSFGVRSD 242 >gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter sp. TrichCH4B] gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Silicibacter sp. TrichCH4B] Length = 410 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W +++YP R SAVIP+L RAQEQEGWV++ A+E Sbjct: 2 LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMICGAEDLIAVCKDKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ID + G+ + P Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGK--AVVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GLTSL D + K Sbjct: 178 GPQNGRYAAEPKSGLTSLKDYEADKP 203 >gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3] gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria pomeroyi DSS-3] Length = 414 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W ++++P R SAVIPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVGT AH+Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 AVADMLGMAYIRVLEVASFYFMFQLQPVGTVAHIQICGTTSCMICGAEDLIAVCKEKIAD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT +R E++D + G+ P Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL + +S K Sbjct: 178 GPQNGRYASEPLKGLTSLTEYDSGK 202 >gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36] gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1] gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1] gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36] Length = 436 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 138/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ + W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +L MAYIR LE+ATFY FQL PVG AH Q+CGTT CM+ G E LIEVC+ +I Sbjct: 60 HVSEMLGMAYIRGLEVATFYFMFQLQPVGEVAHFQICGTTSCMICGAEDLIEVCKERIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT + +ID + GQ P Sbjct: 120 KAHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQ--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSL D++S K Sbjct: 178 GPQNGRYASEPLSGLTSLTDHDSGK 202 >gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255] gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255] Length = 245 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 111/207 (53%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS+RRL QP SF+FS+E+ W + +YP R SAVIP+L RAQEQEGW+S+ A Sbjct: 1 MSIRRLH--TTQPDSFTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE V +L+M +IRVLE+A+FY FQL+PVG+ AH+QVCGT CM+ G E LI +C+ I Sbjct: 59 IEAVGELLEMPFIRVLEVASFYFMFQLAPVGSVAHIQVCGTLSCMICGAEDLIGICKEII 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +KP + DG LSWEEVEC GAC NAPM IGKD YEDLT I++ +G+ Sbjct: 119 SEKPHELSEDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQL--LKGEVP 176 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKK 207 PGPQ R +S P GLT+L D NS K Sbjct: 177 TPGPQNGRYASEPLSGLTTLSDFNSGK 203 >gi|312222072|emb|CBY02012.1| hypothetical protein [Leptosphaeria maculans] Length = 297 Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 117/254 (46%), Gaps = 43/254 (16%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ ++E++SRYP ++AV+PLL Q Q G+ S + Sbjct: 41 LNVHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + PVG + HVQVC TTPCMLR + +++ C +++ Sbjct: 101 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLRDSDAVMKACEDEL 159 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173 DG + EVEC GAC NAPMV I D YEDLT + +I A Sbjct: 160 GIHHGETTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYDSTVALIKALRHAAQATG 219 Query: 174 -----------TGQG------------------------DTIRPGPQIDRISSAPAGGLT 198 G G PGP R S PAGGLT Sbjct: 220 AQPGGKGLVSGAGNGNASNEGAGDKLVNQQGRGYDFGGVKVPTPGPLSGRKSCEPAGGLT 279 Query: 199 SLLDNNSKKRGKKK 212 L +K Sbjct: 280 CLTSEPWGNETLRK 293 >gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans DS-1] gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum lavamentivorans DS-1] Length = 208 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 136/203 (66%), Gaps = 7/203 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MSVRRL + QP+SF+F+ E+ W + I++YP + SA+IPLL RAQEQ GW+ Sbjct: 1 MSVRRL--DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M YIR +E+ATFYT F LSPVG VQ+CGTTPC LRG ++L EVCR Sbjct: 59 AIRHVADMLGMEYIRAIEVATFYTMFNLSPVGEHY-VQLCGTTPCWLRGADELKEVCRKH 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++DG SW EVEC GACVNAPMV I D +EDL E ++ +G+ Sbjct: 118 IGPE-GTVSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGK--D 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++PGPQ +R +S PAGGLTSL + Sbjct: 175 VKPGPQNERHASEPAGGLTSLTN 197 >gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC 49242] gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC 49242] Length = 202 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 130/202 (64%), Gaps = 7/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MSVRRLAE QP SF F+ E+ W+ + I++YP R SAV+P L +AQ+Q W+ + Sbjct: 1 MSVRRLAE--NQPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQK 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M IRVLE+ATFYT F L PVG +Q+CGTTPCML G + LI+V + Sbjct: 59 AIEKVAETLGMPKIRVLEVATFYTMFNLEPVGKYY-IQLCGTTPCMLCGSDDLIKVLERR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + +DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+ Sbjct: 118 VGPQR-KVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 ++ G Q R+SS P GGLTSL Sbjct: 175 VKTGSQKGRVSSEPEGGLTSLT 196 >gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150] gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150] Length = 379 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL +E QP+SF+F+ + W ++++P R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKE--QPASFAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LIEVC+ +I Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEALIEVCQQEIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + + DG SWEEVEC GAC NAPMV IGKD YEDLTPE+L EI+ + G+ P Sbjct: 120 KAHNLSDDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGR--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209 GPQ R ++ P GLTSL + S K+ Sbjct: 178 GPQNGRYAAEPLSGLTSLKEFESGKKA 204 >gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] Length = 460 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+F+ E+ W +++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKD--QPESFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A +LDMAYIR LE+ATFY FQL+PVG+ AHVQ+CGTT CM+ G E LI VC+ I Sbjct: 60 HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEDLIAVCQEMIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT ERL EI+ + G+ P Sbjct: 120 KAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELAEGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202 >gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii 1704] gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii 1704] Length = 264 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + E F F+E++ ++E++ RYPP ++AV+PLL Q Q GW S + Sbjct: 39 LAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K++E Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157 Query: 119 KIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173 + D + EVEC GACVNAPMV I + YEDLTP+ ++++A Sbjct: 158 HLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQINDEYYEDLTPDTAVQLLEALKESAL 217 Query: 174 TGQG----DTIRPGPQIDRISSAPAGGLTSLL 201 G+ PGP R S + GLT+L Sbjct: 218 AGESGKKVKVPAPGPLSGRHSCENSAGLTNLT 249 >gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina 98AG31] Length = 257 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 112/209 (53%), Gaps = 6/209 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R F F+ E I +PP ++AVIP+L AQ Q GW S + Sbjct: 42 LFVHRNTSYNNPDLPFEFTPEYMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSIS 101 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +LDM +RV E+ATFYT F PVG VQVC TTPCML G +++ + Sbjct: 102 VMNYVAKLLDMTPMRVYEVATFYTMFNREPVGEHF-VQVCTTTPCMLGGCGSSIIVDTIK 160 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + + + +D + EVEC GAC NAPMV I D YEDLTP+ +++I+D G+ Sbjct: 161 DHLGIQLGQTTADKKFTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGR- 219 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 PGPQ R SS P GGLTSL + Sbjct: 220 -KPSPGPQSSRKSSEPVGGLTSLSEKPYG 247 >gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 241 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 3/216 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 27 ISVHRDTKEDNPNIPFEFTSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + ++E N + Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMEAITNHL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ I D +EDLTPE +++ G+ + Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATVKLLQQLQEGK-ELS 204 Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP R S P G LL K + D Sbjct: 205 EVGPVDGKRESCEPFSGQKVLLGKEPNDIRKFTRAD 240 >gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Octadecabacter antarcticus 307] gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative [Octadecabacter antarcticus 307] Length = 277 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 145/205 (70%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI + Sbjct: 60 GVADMLGLAFMRALEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT R+ E+IDA + G+ P Sbjct: 120 NPHEVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALARGE--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLT+L D + K Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYEAGK 202 >gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b] gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b] Length = 396 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 117/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL +E QP SF+F+ E+ W I++YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHKE--QPESFAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDM +IR LE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VCR KI Sbjct: 60 HVAQMLDMDFIRGLEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEDLIGVCREKISP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG LSWEEVEC GAC NAPM IGKD YEDLT ER +++D G+ P Sbjct: 120 NPHELSADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGK--VPAP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S P GLTSLL ++ + Sbjct: 178 GPQNGRYASEPVSGLTSLLAHDKGR 202 >gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius nubinhibens ISM] gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius nubinhibens ISM] Length = 437 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 112/205 (54%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+FS + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLYKD--QPESFAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQ+ PVG+ AH Q+CGTT CM+ G E L+ VCR K+ Sbjct: 60 HVADMLGMAYIRALEVASFYFMFQMQPVGSVAHFQICGTTSCMICGAEDLVAVCREKVAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P + DG SWEEVEC GAC NAPM IGKD YEDLT ER EIID + G+ T P Sbjct: 120 NPHELSPDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGK--TPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGR 202 >gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 260 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 10/221 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ F F+E++ + E++ +YPP ++AV+PLL Q Q G+ S + Sbjct: 39 LMVHRNTKDNNPELPFKFNEKNQAVIAEILKKYPPQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + VQ+C TTPC L G + +++ +N Sbjct: 99 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KFFVQICTTTPCQLGGCGSDVIVKAIKN 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + K +DG + EVEC GACVNAPM+ I D YEDLTPE + +++ A Sbjct: 158 HLGIKQGETTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATA 217 Query: 179 T-------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 T +PGP R + + G T+LL + Sbjct: 218 TDPSTVSVPKPGPLSGRSTCENSAGQTNLLAEPWGTETTRS 258 >gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 243 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 29 ISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMKAITDYL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ I D +EDLTPE ++ G+ + Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATINLLKQLQEGK-ELT 206 Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP R S P G LL+ K + D Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242 >gi|197105263|ref|YP_002130640.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1] gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1] Length = 220 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 112/217 (51%), Positives = 137/217 (63%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRL+ QP SF+FS E+ ++ +PP + QSAV+P+L Q+QEGWVS A Sbjct: 1 MSVRRLSP--VQPESFAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I VA +L M IRVLE+ATFYT F L PVGT A VQVCGTTPC RG E L+EVC+ +I Sbjct: 59 IRAVAELLGMPVIRVLEVATFYTMFMLEPVGTHALVQVCGTTPCQSRGAEALMEVCKRRI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + HR++DG W+EVEC GAC NAPM I YEDLTPE E+++D F+ G+ T Sbjct: 119 GPQS-HRSADGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGK--TP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PG I R SAP GG +L D G K KI Sbjct: 176 PPGSAIGRQCSAPEGGPMTLTD-PKLYDGSLAKKIKI 211 >gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 117/189 (61%), Gaps = 3/189 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +SF+F+ E+ ++I++YP R QSAV+PLL AQ Q GW S A IE +A +L+MA I Sbjct: 8 TSFAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPI 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+ TFYT + PVG HVQVC C+LRG + + E + + + +DG Sbjct: 68 RVQEVVTFYTMYNQKPVGQ-YHVQVCTNICCLLRGSDGVGETVKELLGVEWGETTADGKF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 + EVEC GACVNAPM+ I D YEDLTPE + +++A G+ T PGPQ R SAP Sbjct: 127 TLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALKRGE--TPAPGPQGGRQFSAP 184 Query: 194 AGGLTSLLD 202 GG T+L D Sbjct: 185 EGGPTTLGD 193 >gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517] gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517] Length = 378 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 15/227 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R F FS+E+ ++E++ RYPP ++AV+PLL Q Q G+ S + + Sbjct: 154 HRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNE 213 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121 VA +L+M +RV E+ATFYT + PVG + VQ+C TTPC L G +K+++ + Sbjct: 214 VARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLG 272 Query: 122 Q-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---- 176 DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 273 VSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAE 332 Query: 177 ------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 333 NGTQPSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 378 >gi|163741488|ref|ZP_02148879.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10] gi|161385222|gb|EDQ09600.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10] Length = 397 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15] gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15] Length = 294 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 117/258 (45%), Gaps = 43/258 (16%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ + E++SRYP ++AV+PLL Q Q G+ S + Sbjct: 39 LNVHRDTPENNANIPFEFTAQNKELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + +P G + HVQ+C TTPCMLR + +++ C + + Sbjct: 99 MNEVARILEMPPMRVYEVATFYTMYNRNPTG-KFHVQICTTTPCMLRDSDAVMKACEDTL 157 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173 DG + EVEC GAC NAPMV I D YEDLT E ++ A Sbjct: 158 GIHHGQTTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYESTVSLLKALRHASEATG 217 Query: 174 ----------------------------------TGQGDTIRPGPQIDRISSAPAGGLTS 199 G PGP R S PAGGLT Sbjct: 218 ANLGGADGLNTKGNNASPNSAGEDAINRQGRSIEAGNLKIPSPGPLSGRKSCEPAGGLTC 277 Query: 200 LLDNNSKKRGKKKKDDKI 217 L +KD ++ Sbjct: 278 LTGEPWGNET-LRKDGEL 294 >gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacterales bacterium HTCC2654] Length = 423 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP+SF+F+ ++ W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHHE--QPASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 GVADMLGMEYIRALEVATFYFMFQLQPVGSVAHFQICGTTSCMIMGAEDLIAVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT E ++ID G G+ P Sbjct: 120 NPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLIDRM--GAGEVPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R +S PAGGLTSL D+ + K Sbjct: 178 GPQNGRYASEPAGGLTSLKDHEANK 202 >gi|145612669|ref|XP_367376.2| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] gi|145019806|gb|EDK04034.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Magnaporthe oryzae 70-15] Length = 257 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 3/208 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FS ++ + EV+ RYPP ++AV+PLL Q Q G+ S + Sbjct: 43 LMVHRNTPDNNPDIPFKFSAQNEKVITEVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISV 102 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + Sbjct: 103 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDAIVKAIKE 161 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 ++ DG ++ EVEC GACVNAPM+ I D YEDLTPE + ++ Sbjct: 162 ELGISQGQTTPDGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETTKSLLAGLKDPSKA 221 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSK 206 GP R S +GGLT+L Sbjct: 222 VPPAGPLSGRHSCEHSGGLTNLTSEPWG 249 >gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2] gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2] Length = 366 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 144/205 (70%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP +F+F+ ++ W + ++P R SA+IP+L RAQEQEGW+SRAAIE Sbjct: 2 LRRLYHD--QPETFAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LD+AYIR LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI Sbjct: 60 HVAAMLDLAYIRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKITD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC G+C NAPM IGKD YEDLT ERL EIID + G+ P Sbjct: 120 KPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGR--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL D++S K Sbjct: 178 GPQNGRYAAEPLKGLTSLKDHDSGK 202 >gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp. R11] gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp. R11] Length = 391 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHSE--QPESFAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC+ KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCKEKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|331251140|ref|XP_003338171.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317161|gb|EFP93752.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 277 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 115/218 (52%), Gaps = 7/218 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R F F+ E I +PP ++AVIP+L AQ Q GW S + Sbjct: 62 LFVHRDTSYNNPQIPFEFTPEYMEKAQRCIDNFPPQYKKAAVIPVLDLAQRQNNGWTSIS 121 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 + VA +L+M +RV E+ATFYT F PVG VQ+C TTPCML G ++E + Sbjct: 122 VMNYVAKLLEMPPMRVYEVATFYTMFNREPVGEHF-VQICTTTPCMLGGCGSGVIVEAIK 180 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 N + + D + EVEC GAC NAPMV I D YEDLTPE + +++D + G+ Sbjct: 181 NHLGVELGQTTKDKKFTVIEVECLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGR- 239 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R SS P G LTSL + G+ ++ Sbjct: 240 -KPKPGPQSSRQSSEPVGKLTSLSE-KPYGPGEHCVEE 275 >gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18] gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris BisB18] Length = 265 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 118/202 (58%), Positives = 148/202 (73%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRRLA +E QP SF+F+EE+ W I++YPP R SAVI ++ RA EQ G W++ A Sbjct: 15 MAVRRLAPKELQPESFAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEA 74 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA++L M +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+ Sbjct: 75 AIRAVADLLQMPHIRALEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEDIIKVCKNR 134 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH +P H ++DG SWEEVEC G+CVNAPMVMI KDTYEDLTPE +++D F++G + Sbjct: 135 IHHEPFHLSADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASG--NF 192 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 PGPQ R +AP GG L Sbjct: 193 PTPGPQNGRQFAAPEGGPRVLK 214 >gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Thalassiobium sp. R2A62] gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Thalassiobium sp. R2A62] Length = 366 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHHE--QPDSFAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+ +LD+A+IR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E LI VC++KI Sbjct: 60 HVSTMLDLAFIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLIGVCQDKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP H ++DG SWEEVEC GAC NAPM IGKD YEDL ERL EII+ G+ P Sbjct: 120 KPHHLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGK--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + +S + Sbjct: 178 GPQNGRFAAEPLSGLTSLTEYDSGR 202 >gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus 238] gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus 238] Length = 354 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 145/205 (70%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ ++ W N I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A++R LE+A+FY FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI + Sbjct: 60 SVADMLGLAFMRALEVASFYFMFQLKPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC G+C NAPM IGKD YEDLT ++ ++IDA + G+ P Sbjct: 120 NPHDVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALARGE--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLT+L D + K Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYAADK 202 >gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium KLH11] gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium KLH11] Length = 365 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+A+FY FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI Sbjct: 60 SVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG LSWEEVEC G+C NAPM IGKD YEDLT E +++D G+ P Sbjct: 120 KPHVLSADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGR--VPIP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL ++S + Sbjct: 178 GPQNGRYAAEPLKGLTSLTAHDSGR 202 >gi|163738801|ref|ZP_02146215.1| ATP synthase subunit E [Phaeobacter gallaeciensis BS107] gi|161388129|gb|EDQ12484.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis BS107] Length = 397 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ E+ W I+++P R SA+IPLL RAQEQEGW+S+ AIE Sbjct: 2 LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+A+FY FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI Sbjct: 60 YVADMLGMAYIRALEVASFYFMFQLQPTGSIAHVQICGTTSCMICGAEDLIAVCQDKIAN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG +WEEVEC GAC NAPM IGKD YEDLT E +++D + GQ P Sbjct: 120 QPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQ--VPLP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R ++ P GLTSL + S K Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202 >gi|324507243|gb|ADY43075.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Ascaris suum] Length = 280 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 4/192 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + + +++ YP +A+IP L AQ Q GW+ +A+ VA IL++ +RV E+ATF Sbjct: 90 NLERIKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVATF 149 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 YT F PVG + +QVC TTPCMLRG E L E K+ K DG + EVEC Sbjct: 150 YTMFNRQPVG-KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLFTLMEVECL 208 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201 GAC NAPM+ + D YEDLTP + +I+ G+ +PGP+ R+++ P GG TSL Sbjct: 209 GACANAPMIQVNDDFYEDLTPSDMNDILSELKAGK--RPKPGPRSGRLAAEPHGGFTSLK 266 Query: 202 DNNSKKRGKKKK 213 + + G + Sbjct: 267 -SPPRGPGFGIQ 277 >gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Harpegnathos saltator] Length = 216 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 117/213 (54%), Gaps = 5/213 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R +E + F F+E + + +++ YP + A+IPLL AQ Q GW+ +A+ Sbjct: 7 HRDSEHDNPNIPFEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 66 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA ILD+ +RV E+ATFYT F P+G + HVQ+C TPC LR + ++E + + Sbjct: 67 VAEILDLPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKATNCE 125 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++D + EVEC GAC NAPM + D YEDLTPE II+AF +G+ G Sbjct: 126 IGATSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFK--KGERPPAG 183 Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PQ R ++ PAGGLTSL G + D Sbjct: 184 PQNSTRFAADPAGGLTSLT-TPPPGPGFGIRSD 215 >gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris BL2] gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris BL2] Length = 264 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 108/202 (53%), Positives = 137/202 (67%), Gaps = 7/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRRLAE QP SF+FS E+ WV+ +I++YP R SAVI LL RAQ+Q G W+ R Sbjct: 1 MTVRRLAE--VQPDSFAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M YIRVLEIATFY+ F LSPVG VQ+CGTTPC+L G + + V +N+ Sbjct: 59 AIEAVAEKLGMPYIRVLEIATFYSMFNLSPVGEHF-VQLCGTTPCLLAGSDGIKSVLKNR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I +P +DG SW EVEC GAC NAPMV I D +EDLTP+ +++D + G+ Sbjct: 118 IG-EPGVVTADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 + G Q R+SS PAGGLT+L+ Sbjct: 175 VTAGSQTGRVSSEPAGGLTALV 196 >gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida albicans SC5314] gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1] Length = 243 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 3/216 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ +F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 29 ISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 89 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDSIMKAITDYL 147 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 KP D + +EVEC GACVNAPM+ I D +EDL+PE ++ G+ + Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGK-ELT 206 Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 GP R S P G LL+ K + D Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242 >gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980] gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980 UF-70] Length = 292 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 41/248 (16%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R E F F+ ++ V E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LNVHRDTPENNASIPFKFTPQNEKLVEEILKRYPPQYKKAAVMPILDLGQRQHGFTSLSV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + +PVG + H+QVC TTPC L G + +++ Sbjct: 99 MNEVARLLEMPPMRVYEVATFYTMYNRNPVG-KYHLQVCTTTPCQLGGCGSDAIVKTIEQ 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + KP H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ A Sbjct: 158 HLGIKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQASASD 217 Query: 175 ------GQG----------------------------DTIRPGPQIDRISSAPAGGLTSL 200 G+G PGP R + GLT+L Sbjct: 218 IAGTEGGKGAITGDDKNVKSGAEVGEDSGKVYNKGGVKVPSPGPMSGRKTCENLNGLTNL 277 Query: 201 LDNNSKKR 208 K Sbjct: 278 TSEPWSKE 285 >gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans ORS 2060] gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans ORS 2060] Length = 385 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP SF+F+ E+A W + I++YP R SAVIPLL RAQEQ G W+ + Sbjct: 1 MANRRLAPTAEQPESFAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G + L + + Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKDLKRMLEER 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H + DGT SW EVEC GAC NAPMV I D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GHVSPDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213 ++ G QI R SS P G +T+L D + + G +K Sbjct: 177 VKTGSQIGRTSSEPLGAVTTLTDETLFDGSRIGAWRK 213 >gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] gi|108878789|gb|EAT43014.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti] Length = 207 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 3/183 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 VN +++ YP + A+IPLL AQ Q GW+ +A+ VA+IL + +RV E+ATFYT Sbjct: 19 QRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYT 78 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P GT HVQVC TTPC LRG ++++ C+ K+ DG + EVEC GA Sbjct: 79 MFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGA 137 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203 CVNAPM+ + D YEDLT + EI+ G+ RPGP+ R +S P GGLTSL + Sbjct: 138 CVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTEE 195 Query: 204 NSK 206 Sbjct: 196 PKG 198 >gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella sp. SE45] gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella sp. SE45] Length = 388 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 114/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W I++YP R SAVIPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHPE--QPESFAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIRVLE+ATFY FQL PVG+ AHVQVCGTT CM+ G E LI VC+ KI Sbjct: 60 TVADMLGMAYIRVLEVATFYFMFQLQPVGSVAHVQVCGTTTCMICGAEDLIGVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K + DG SWEEVEC G+C NAPM IGKD YEDLT ERL EI+D + G+ P Sbjct: 120 KAHVVSPDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R S P GG L + + Sbjct: 178 GPQNGRYGSEPLGGPVVLTAHVDGR 202 >gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82] Length = 245 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 6/215 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R +F F E+ E+IS YPP ++AVIPLL Q Q GW S + Sbjct: 31 LFVHRDTPYNNPKIAFEFDTENMKRAQEIISFYPPQYKKAAVIPLLDLGQRQNKGWTSIS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 + VAN+L M +RV E+ATFYT F P+G VQVC TTPCMLRG +++ + Sbjct: 91 VMNYVANLLGMPPMRVYEVATFYTMFNREPIGENF-VQVCTTTPCMLRGSPEILNTVCDH 149 Query: 120 IH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + KP SDG + EVECQGAC NAPM+++G D YEDLTPE ++I+ AF+ GQ Sbjct: 150 LGGIKPGQTTSDGKFTVVEVECQGACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQ-- 207 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 + GPQ R +S + GLTSL G+ + Sbjct: 208 KPKAGPQSGRRTSENSAGLTSLT-TKPYGPGEFCQ 241 >gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 252 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 7/216 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F F+EE V+ VISRYP ++AVIP+L Q Q GW S A Sbjct: 37 LFVHRDTDYNNPNIKFEFNEEYRKKVDTVISRYPKQYRKAAVIPVLDLGQRQNGWTSLAV 96 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA +L+M +RV E+ATFYT + PVG + + CGTTPC+L G +++ + + Sbjct: 97 MNHVAEVLEMPRMRVYEVATFYTMYNREPVG-KHLISYCGTTPCLLGGVGGKRIWDTMTS 155 Query: 119 KI-HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + K DG + EVEC GAC NAPM+ I D YEDLTPE +I+DA + G+ Sbjct: 156 HLGGIKNGETTKDGKFTLVEVECLGACSNAPMIQINDDFYEDLTPESTIKILDALARGE- 214 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 T +PGPQ R +S A G+T+L + G+ + Sbjct: 215 -TPKPGPQSSRKTSENAQGMTTLT-SAPYGPGEHCQ 248 >gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella graminicola M1.001] Length = 263 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 12/217 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F FS+E+ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 40 LQVHRDSPKNNADIPFKFSKENEAVIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118 + VA +L+M RV E+A+FYT + +PVG + +Q C TTPC L G + +++ + Sbjct: 100 MNEVARLLEMPPQRVYEVASFYTMYNRTPVG-KYFIQACTTTPCQLGGVGSDVIVKAIID 158 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + K DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 159 HLGIKQGETTKDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPETTVQLLDALKATATA 218 Query: 174 ---TGQGDTIRPGP-QIDRISSAPAGGLTSLLDNNSK 206 +PGP R + + GLT+L Sbjct: 219 TGGAAAAQVPKPGPINSGRQTCENSKGLTNLTSEPWG 255 >gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC 30864] Length = 255 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 127/223 (56%), Gaps = 13/223 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R A ++ F F+ E+ +I+ YPP +A IPLL AQ Q GW+ +A Sbjct: 37 LFVHRDAG-VYKDEPFEFTAENLTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWLPLSA 95 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +LDMA IRV E A+FYT F +G + HVQVC TTPC+L G +K+++ + Sbjct: 96 MNTVAKMLDMAPIRVYETASFYTMFNREKIG-KYHVQVCTTTPCLLGGCGSDKIMKAVQK 154 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + P SDG ++ EVEC GACVNAPM+ I D YEDLTPE E+I+D F +GD Sbjct: 155 NLGVHPGGTTSDGLFTFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFR--RGD 212 Query: 179 TIRPGPQID------RISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ D R S P GLT+L + + G + D Sbjct: 213 RPKPGPQKDPATGKLRKSCEPVDGLTTLKEKPTG-PGFGVRAD 254 >gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius sp. 217] gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius sp. 217] Length = 398 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 114/206 (55%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLYHK--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 HVADLLRMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCQEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P Sbjct: 120 KAFELSTDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GLTSL + S + Sbjct: 178 GPQNGRYAAEPKSGLTSLKEFESGRA 203 >gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15] gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000] gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15] gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000] Length = 228 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS++S + ++YP R QSAVIP+L AQ+QEGW+S A Sbjct: 1 MSVRRLAKE--QPASFAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L+M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L +V +KI Sbjct: 59 IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLRKVLEDKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ Sbjct: 119 GP-AHHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGK--AP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PG R +S P G + +L D G K KI Sbjct: 176 KPGSYEGRGASEPKGAIHTLTD-PKLYDGSYAKKIKI 211 >gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222] gi|266652|sp|P29914|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1, chain 2 gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans] gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222] Length = 239 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 109/204 (53%), Positives = 136/204 (66%), Gaps = 4/204 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL+ QP SF F+ + W +++YP R QSA+IP+L RAQEQEGW+SR AIE Sbjct: 2 LRRLSP--IQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A++L M YIR LE+ATFY FQL PVG+ AH+Q+CGTT CM+ G E LI VC+ KI Sbjct: 60 YCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLT E+L +ID F+ G+ P Sbjct: 120 EPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGE--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206 GPQ R S+ GG T+L D Sbjct: 178 GPQNGRFSAEALGGPTALADLKGG 201 >gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035] gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035] Length = 396 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 115/206 (55%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP SF+FS + W IS+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLYHQ--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L M YIR LE+ATFY FQL PVG+ AH Q+CGTT CM+ G E LI VC++KI Sbjct: 60 HVADMLAMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC GAC NAPM IGKD YEDLT R EIID + G+ P Sbjct: 120 KAFDLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGK--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GLTSL D +S + Sbjct: 178 GPQNGRYAAEPKSGLTSLKDFDSGRA 203 >gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099] gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti MAFF303099] Length = 424 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 131/205 (63%), Positives = 157/205 (76%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPVSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G ++ Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205 PGPQ R S PA GLT+L + Sbjct: 181 APGPQNGRTGSEPASGLTTLKSEKA 205 >gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 426 Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 130/205 (63%), Positives = 157/205 (76%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLAE QP+SF+F+ +A + I +YP R QSA+IPLLM AQEQEGWV++AA Sbjct: 1 MSVRRLAEASVQPASFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE ++++L M IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+K+ Sbjct: 61 IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKV 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H H N GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID + G+G + Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAV 180 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205 PGPQ R S PA GLT+L + Sbjct: 181 EPGPQNGRTGSEPASGLTTLKSEKA 205 >gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1] gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1] Length = 395 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 111/206 (53%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL E QP SF+F+ ++ W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHPE--QPDSFAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L +A+IR LE+ATFY FQL PVG AH+Q+CGT CM+ G E L+ V R KI Sbjct: 60 GVADMLGLAHIRALEVATFYFMFQLQPVGAVAHIQICGTLSCMICGAEDLVAVAREKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC GAC NAPM IGKD YEDLT E IIDA + G+ P Sbjct: 120 NPHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMARGE--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ +R +S PAGGLTSL ++ + + Sbjct: 178 GPQTERYASEPAGGLTSLTEHAAGRD 203 >gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella vestfoldensis SKA53] gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella vestfoldensis SKA53] Length = 309 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP++F+F++ + W + ++P R SA+IP+L RAQEQEGW++R AIE Sbjct: 2 LRRLYHD--QPATFAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +LDMAY+R LE+A+FY FQL PVG+ AH+QVCGT CM+ G E LI VC++KI Sbjct: 60 YVAKMLDMAYMRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 K ++DG SWEEVEC G+C NAPM IGKD YEDLT RL EIID + G+ P Sbjct: 120 KAHSLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGR--VPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R ++ P GGLT+L D S K Sbjct: 178 GPQNGRFAAEPKGGLTTLKDFTSGKA 203 >gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis] Length = 241 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FSEE+ V + + YP +A++P+L AQ Q GW+ +A Sbjct: 28 LFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISA 87 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK- 119 + VA+++ + +R+ E+ATFYT + VG + HVQVC TTPCMLRG +++++ + + Sbjct: 88 MNKVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKEC 146 Query: 120 IHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + + D + EVEC GAC NAPM+ I D YEDLT + + I G+ Sbjct: 147 LGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFSEIRAGK-- 204 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GPQ R+++ P GLTSL + G K +++ Sbjct: 205 KPKMGPQSGRLAAEPISGLTSLT-STPYGPGFKVQEN 240 >gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL YB-4239] gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL YB-4239] Length = 246 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R +E+ F F+ E+ E+I++YPP + A +PLL Q Q G+ S + Sbjct: 27 ISVHRETKEDNTTLPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +LDM +RV E+ATFYT + P+G + ++QVC TTPC L G + +++ + + Sbjct: 87 MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNIQVCTTTPCQLCGSDGIMDAIKGYL 145 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG----Q 176 KP D + +EVEC GACVNAPM+ + D +EDLTPE +++ G + Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVNDDYHEDLTPEATVDLLKKLKEGGDNFE 205 Query: 177 GDTIRPGP-QIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 I GP R S P G LL K + D Sbjct: 206 LSEIGVGPVLNKRESCEPFSGQKVLLSKEPNDMRKFTRAD 245 >gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14] Length = 267 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R + + SSF F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+ Sbjct: 35 HRDTRDNTKESSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I+D+ I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ + Sbjct: 95 KVARIVDVKPIQVYEVATFYTMFNREKVG-KFFIQLCGTTPCMICGSEEIKHTIEEHLGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181 K DG + EVEC GAC NAPMV I D YE+LTPE +E+++A GQ + + Sbjct: 154 KEGETTKDGMFTLREVECLGACANAPMVQINDDFYENLTPETTKELLEACKCGQPPKMSK 213 Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 G P ++S G TSLL + G + + D Sbjct: 214 WGSLPLNGQLSCEGPQGKTSLLWDKHPPPGFRMRPD 249 >gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor [Pichia angusta DL-1] Length = 234 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 114/213 (53%), Gaps = 4/213 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 +V R + Q F F+ E+ E++ RYPP +SAV+PLL Q Q G+ S A + Sbjct: 25 AVHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAVM 84 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 VA +LDM +RV E+A+FYT + PVG + H+Q+C TTPC L + +IE ++ Sbjct: 85 NHVAELLDMPAMRVYEVASFYTMYHREPVG-KYHIQICTTTPCQLCNSDSVIEAIMKHLN 143 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 +P DG S EEVEC GACVNAPM+ I D YEDLT E EI++A +G+ I Sbjct: 144 LQPNQTTPDGLFSLEEVECLGACVNAPMMQINDDYYEDLTAESAVEILEALKSGKDVPIG 203 Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 R S P G L++ + D Sbjct: 204 T---TKRESCEPFSGPKVLVNEPLDVSTLTRSD 233 >gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor [Metarhizium acridum CQMa 102] Length = 259 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 9/214 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + + R + F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + Sbjct: 39 LMIHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + +PVG + VQ C TTPC L G + +++ + Sbjct: 99 MNEVARLLEMPPMRVYEVASFYTMYNRNPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + K +DG ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A Sbjct: 158 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGD 217 Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 + +PGP R + + G T+LLD Sbjct: 218 ASAAAKVPKPGPLTGRDTCENSKGQTNLLDEPWG 251 >gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31] gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31] Length = 228 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 111/217 (51%), Positives = 136/217 (62%), Gaps = 6/217 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP+SF+FS ES + ++YP R QSAVIP+L AQ+QEGWVS A Sbjct: 1 MSVRRLAKE--QPASFAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I+ +A L M IRVLE+ATFY FQL PVG A VQ+CGTTPC LRG L V + KI Sbjct: 59 IQEIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKAKI 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + ++DG SWEEVEC GAC NAPM I YEDLTPE L +I+D F+ G+ + Sbjct: 119 G-QANDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +PG R +S P G + +L D G K KI Sbjct: 176 KPGSYDGRGASEPKGAIHTLTD-PKLYDGSLAKKIKI 211 >gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis] Length = 1053 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 6/218 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F FSEE+ V + + YP +A++P+L AQ Q GW+ +A Sbjct: 28 LFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISA 87 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK- 119 + VA+++ + +R+ E+ATFYT + VG + HVQVC TTPCMLRG +++++ + + Sbjct: 88 MNKVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKEC 146 Query: 120 IHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + + D + EVEC GAC NAPM+ I D YEDLT + + I + G+ Sbjct: 147 LGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFNEIRAGK-- 204 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 + GPQ R+++ P GLTSL + GK + Sbjct: 205 KPKMGPQSGRLAAEPISGLTSLT-STPYGPGKFGDSGE 241 >gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 305 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 9/214 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + + R + F F++E+ + E++ RYP ++AV+PLL Q Q G+ S + Sbjct: 85 LPLHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISV 144 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA +L+M +RV E+A+FYT + SPVG + VQ C TTPC L G + +++ + Sbjct: 145 MNEVARLLEMPPMRVYEVASFYTMYNRSPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKE 203 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173 + K +DG ++ EVEC GACVNAPM+ I D YEDLTPE + +++ A Sbjct: 204 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGE 263 Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 + +PGP R + + G T+LLD Sbjct: 264 ASAAAKVPKPGPLTGRDTCENSKGQTNLLDEPWG 297 >gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Phytophthora infestans T30-4] gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Phytophthora infestans T30-4] Length = 271 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 6/219 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R E+ + F F+ E+ V+ ++ RYP + SA+IPLL AQ Q G W+ AA+ Sbjct: 39 HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I+D I+V E+ATFYT F VG + +Q+CGTTPCM+ G E++ + N + Sbjct: 99 KVARIVDAKPIQVYEVATFYTMFNREKVG-KYFIQLCGTTPCMICGSEEIKKTIENHLGI 157 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181 K DG + EVEC GAC NAPMV I D YE+LT E E++DA + + Sbjct: 158 KEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTAETTRELLDACKNDAPPLMNK 217 Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRG-KKKKDDKI 217 G P ++S G T+L + G + + DD++ Sbjct: 218 WGSLPMNGQLSCEGPQGKTTLKWDKVPGPGFRMRPDDEL 256 >gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1] gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1] Length = 297 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 86/254 (33%), Positives = 117/254 (46%), Gaps = 43/254 (16%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + Sbjct: 41 LNVHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + HVQVC TTPCML + +++ C + + Sbjct: 101 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLCDSDSVMKACEDVL 159 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173 DG ++ EVEC GAC NAPMV I D YEDLT E ++ A Sbjct: 160 GVHHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYESTVNLLKALKHAAQATG 219 Query: 174 -----------TGQGDT------------------------IRPGPQIDRISSAPAGGLT 198 G+G T PGP R S PAGGLT Sbjct: 220 AQPGDKGLASGAGKGTTTGEGAGDAVANAQGRQYEAGGVKVPSPGPLSGRASCEPAGGLT 279 Query: 199 SLLDNNSKKRGKKK 212 L +K Sbjct: 280 CLTSEPWGNETLRK 293 >gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46] gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46] Length = 394 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 102/204 (50%), Positives = 131/204 (64%), Gaps = 5/204 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA E QP++F+F+ E+A W I++YP R SAVIPLL RAQEQ G W+ + Sbjct: 1 MANRRLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC + G ++L ++ Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKELKHYLHDR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H + DG SW EVEC GAC NAPMV I +D YEDLTPE L ++D + G+ Sbjct: 120 LGP-AGHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203 ++ G Q R SS P G T+L D Sbjct: 177 VKAGSQAGRTSSEPKGAATTLTDE 200 >gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506] gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506] Length = 290 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 118/202 (58%), Positives = 146/202 (72%), Gaps = 3/202 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA E QP +F+F++E+ W + I++YP R SAVIPLLMRAQEQ GWVS Sbjct: 1 MSVRRLAPREVQPENFAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEP 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ V ++L MA IRV EIATFYTQFQL+PVG +AH+QVCGTTPCMLRG +L++VC+++ Sbjct: 61 AMRYVGDMLGMAPIRVYEIATFYTQFQLNPVGKKAHIQVCGTTPCMLRGAGELMDVCKHR 120 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH++ H + +G SWEEVEC G CVNAPM+ + KD YEDLTP LE I+DAF G+ Sbjct: 121 IHEEQFHLSENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFERGE--K 178 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 GPQI R SS P GL L Sbjct: 179 PDAGPQIARHSSEPVTGLRVLT 200 >gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis] gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis] Length = 202 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 109/188 (57%), Gaps = 4/188 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R + F F+E + +++ YP ++AVIPLL AQ Q GW+ + Sbjct: 14 LFVHRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPIS 73 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+ L+M +RV E+ATFYT F PVG + HVQVC TTPC LR + L++ ++K Sbjct: 74 AMNYVADFLNMPRMRVYEVATFYTMFNREPVG-KYHVQVCTTTPCQLRNADDLLDTLKSK 132 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + K + DG + VEC GACVNAPM+ I + YEDL+ + EEIID G+ T Sbjct: 133 LGIKEGETSKDGMFTLTVVECLGACVNAPMMQINDNYYEDLSMKDAEEIIDDLIAGR--T 190 Query: 180 IRPGPQID 187 +PGP+ Sbjct: 191 PKPGPRYS 198 >gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB 1003] gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus] gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter capsulatus] gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus] gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB 1003] Length = 389 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 109/208 (52%), Positives = 137/208 (65%), Gaps = 4/208 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W I++YP R SAVIPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLH--ATQPDSFAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++LDM YIRVLE+A+FY FQL P G+ AH+QVCGTT CM+ G E LIEVC+ KI Sbjct: 60 YVADLLDMPYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMIMGSENLIEVCKRKISH 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P ++DG SWEEVEC GAC NAPM IGKD +EDLT LE +ID + G+ P Sbjct: 120 HPHALSADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGK--APVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGK 210 G +I R + PA GLTS + + + Sbjct: 178 GSEIGRFGAEPATGLTSCTTTSGAREAQ 205 >gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacterales bacterium HTCC2083] gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Rhodobacteraceae bacterium HTCC2083] Length = 384 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL ++ QP SF+F+ + W I++YP R SA+IPLL RAQEQEGW++R AIE Sbjct: 2 LRRLHKD--QPDSFAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 V+++L +AYIR LE+A+FY FQL PVG+ AH+Q+CGT CM+ G E L+ VCR KI Sbjct: 60 HVSDMLGLAYIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCREKISN 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +++D + G P Sbjct: 120 KPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAG--SVPTP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207 GPQ R S P GL+SL D +S K Sbjct: 178 GPQNGRYSCEPLSGLSSLKDYDSGK 202 >gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58] gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58] Length = 226 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 99/216 (45%), Positives = 132/216 (61%), Gaps = 14/216 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ Sbjct: 10 EAETRARWGAFAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 +E +A LDM Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+N Sbjct: 70 PVMEYIARQLDMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 129 KGLIK-GSTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGK-- 185 Query: 179 TIRPGPQIDRISSAPAGGLTSL---LDNNSKKRGKK 211 + GPQIDR +S P GG TSL +++N RG+ Sbjct: 186 QPKIGPQIDRQTSCPEGGPTSLPEMVEDNHDYRGQW 221 >gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS 113480] gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS 113480] Length = 263 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 17/229 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R F FS+E+ ++E++ RYPP + AV+PLL Q Q G+ S + Sbjct: 40 LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 99 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT-PCMLRGCEKLIEVCRNK 119 + VA +L+M +RV E+ATFYT + PVG + VQ+C T C G +K+++ Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTLGGC---GSDKIVKAITEH 155 Query: 120 IHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + DG + EVEC GACVNAPMV I D YEDLTPE +++DA Sbjct: 156 LGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPETTIQLLDALKASAVA 215 Query: 175 ------GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLTSL + +KD ++ Sbjct: 216 AENGTQSNVKVPPPGPLSGRKTCENSAGLTSLTE-PLWGNETLRKDGEL 263 >gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium OB3b] gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium OB3b] Length = 208 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 110/216 (50%), Positives = 139/216 (64%), Gaps = 9/216 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS RRLAEE QPSSF F+ E+ W+ I++YP R S V+P L +AQ+Q W+ + Sbjct: 1 MSTRRLAEE--QPSSFEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQK 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M YIRVLEIATFYT F L PVG + +VQ+CGTTPCML G + LI V + Sbjct: 59 AIEKVAQTLGMPYIRVLEIATFYTMFNLEPVG-KFYVQLCGTTPCMLSGSDDLIAVLERR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + H ++DG SW EVEC GAC NAPMV I D YEDLT E E+++D + G+ Sbjct: 118 VGPQR-HVSADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 ++ G Q RISS PAGGLTSL + G K + + Sbjct: 175 VKTGSQTGRISSEPAGGLTSLT--SLYGDGAKAQAE 208 >gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500] Length = 342 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 7/219 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +S EE + F F+EE+ + V +++S+YPP+ QSA+IPLL AQ Q G W+S Sbjct: 34 LSRHIETEENNDHTPFDFNEENMVKVEKILSKYPPAYRQSAMIPLLDLAQRQNGGWISLR 93 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA I+ + + E+A+FYT F + +G + VQVC TTPCMLRG +++ C++ Sbjct: 94 AMDKVAEIIGVPPMEAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTAILDACKHH 152 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + D + EVEC GACVNAPM+ I D YEDLTP+ ++ +++ G+ Sbjct: 153 LKIGVGETTKDDVFTLAEVECLGACVNAPMICINDDFYEDLTPDSMKNLLNQIQNGKETK 212 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 I GPQ R ++ G T+LL+ S G +DD +S Sbjct: 213 I--GPQTHRKAAEGPQGKTTLLEQPS---GPFCRDDLMS 246 >gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 388 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 121/212 (57%), Positives = 151/212 (71%), Gaps = 6/212 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+VRR+ + QP+ F+FS E+ W E I++YP + SA+IPLL RAQEQ G W+ Sbjct: 1 MAVRRVNPD--QPAEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI V ++L MA+IR +E+ATFYT FQLSPVGT+AHVQVCGTTPCMLRG LI VC+++ Sbjct: 59 AIRAVCDLLGMAHIRGMEVATFYTMFQLSPVGTKAHVQVCGTTPCMLRGSRDLISVCQHR 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 IH+ P NSDGTLSWEEVEC G C NAP+V IGKDTYEDLT E+ E+++D F G+ Sbjct: 119 IHEHPHTPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGK--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 ++PG Q R +S PAGG TSL D S G Sbjct: 177 LKPGSQTGRTASCPAGGPTSLTDQ-SLYDGST 207 >gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2] gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2] Length = 254 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 113/206 (54%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP+SF+F+ + W +S+YP R SA+IPLL RAQEQEGW+SR AIE Sbjct: 2 LRRLHH--TQPASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ A++Q+CGTT C++ G E LI VCR I Sbjct: 60 HVADMLGMAYIRALEVATFYFMFQLQPVGSVANIQICGTTSCLICGAEDLIAVCRELIAD 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 KP ++DG SWEEVEC GAC NAPM IGKD YEDL ERL +I FS G+ P Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGE--VPVP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208 GPQ R +S P GLTSL D+ + + Sbjct: 178 GPQNGRYASEPLAGLTSLKDHAAGRA 203 >gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10] gi|150854112|gb|EDN29304.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10] Length = 271 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 113/245 (46%), Gaps = 41/245 (16%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R + F F+ ++ + E++ +YPP ++AV+P+L Q Q G+ S + + Sbjct: 21 HRDTPDNNASIPFKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQHGFTSLSVMNE 80 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121 VA +L+M +RV E+ATFYT + +PVG + HVQ C TTPC L G + +++ + Sbjct: 81 VARLLEMPPMRVYEVATFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIEGHLG 139 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------- 173 KP H DG ++ EVEC GACVNAPMV I D YEDLTPE ++ A Sbjct: 140 IKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQSSASEIAN 199 Query: 174 --TGQG----------------------------DTIRPGPQIDRISSAPAGGLTSLLDN 203 G+G PGP R + GLT+L Sbjct: 200 SEAGKGAITGEDANVKSGAEVGEDAGRIYNKGGVKVPSPGPMSGRKTCENIKGLTNLTSE 259 Query: 204 NSKKR 208 K Sbjct: 260 PWSKE 264 >gi|307293266|ref|ZP_07573112.1| NADH-quinone oxidoreductase, E subunit [Sphingobium chlorophenolicum L-1] gi|306881332|gb|EFN12548.1| NADH-quinone oxidoreductase, E subunit [Sphingobium chlorophenolicum L-1] Length = 222 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 95/217 (43%), Positives = 128/217 (58%), Gaps = 14/217 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q GW+ Sbjct: 10 EAETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+N Sbjct: 70 PVMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 129 K-GLVKGGTTPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGK-- 185 Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKK 212 + GPQI+R +S P GG T+L + N RG Sbjct: 186 QPKIGPQIERQTSCPEGGPTTLKEMVSGNHDYRGDWA 222 >gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S] gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S] Length = 222 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 97/217 (44%), Positives = 130/217 (59%), Gaps = 14/217 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + +F+++ E+A +VI+RYP R QSAV+PLL AQ Q +GW+ Sbjct: 10 EAETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + + C+N Sbjct: 70 PVMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K DG + EVEC GAC NAPMV I D +EDLT + + I+D + G+ Sbjct: 129 K-GLVKGGTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGK-- 185 Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKK 212 R GPQIDR +S P GG T+L + N RG+ Sbjct: 186 QPRIGPQIDRQTSCPEGGPTTLKEMVGENHDYRGEWA 222 >gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii] Length = 178 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R E + F F+ E+ V ++I YP +AVIP+L AQ Q GW+ +A+ Sbjct: 1 HRDTPENNPGTPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHE 60 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA IL+M+ IRV E+ATFYT F PVG + H+Q+C TTPCMLR + +++V +NK+ Sbjct: 61 VAGILEMSKIRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLRDSDGILDVIKNKLGIG 119 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 D + EVEC GACVNAPMV I + YEDLT + +EEIID + T + G Sbjct: 120 VGETTKDNMFTLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR--TPKAG 177 Query: 184 P 184 P Sbjct: 178 P 178 >gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966] gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966] Length = 271 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 121/232 (52%), Gaps = 27/232 (11%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + V R FSF E ++IS+YPP ++AVIPLL AQ+Q WVS + Sbjct: 40 LFVHRDTPYNNASIPFSFVGEYEQEAKDIISKYPPQYKKAAVIPLLHLAQKQNDNWVSIS 99 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117 A+ VA++L+M +RV E+ATFYT F SPVG + VQVC TTPCML G ++E Sbjct: 100 AMNHVADVLEMPPMRVYEVATFYTMFNRSPVG-KFFVQVCTTTPCMLGGCGSTAVLEAIE 158 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-------------------- 157 N + K H D + EVEC GAC NAPM+ I + Y Sbjct: 159 NHLGIKAGHTTPDKMFTVIEVECLGACSNAPMIQINDEYYVRIFYNTHTHTHTSGSSNAE 218 Query: 158 -EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 EDLTPE + +++D + G+ ++PGPQ R++SAP +L + R Sbjct: 219 QEDLTPESVVKVLDGLARGEH--VKPGPQNGRLTSAPDNKNRTLTEEVCNHR 268 >gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens PA1] gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium chloromethanicum CM4] gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens PA1] gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium chloromethanicum CM4] Length = 412 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213 ++ G QI R+SS P + +L D + + G +K Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213 >gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens DM4] gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens DM4] Length = 412 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213 ++ G QI R+SS P + +L D + + G +K Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213 >gi|240137578|ref|YP_002962049.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens AM1] gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) [Methylobacterium extorquens AM1] Length = 412 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +QVCGT PC G ++L + Sbjct: 61 AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + +DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213 ++ G QI R+SS P + +L D + + G +K Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213 >gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025] gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides ATCC 17025] Length = 303 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 115/204 (56%), Positives = 138/204 (67%), Gaps = 4/204 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W IS+YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHH--AQPDSFAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MA IR LE+ATFY FQL PVG AH+Q+CGTT C++ G E+LI VCR KI Sbjct: 60 HVADMLGMARIRALEVATFYFMFQLQPVGRVAHIQICGTTSCLICGAEELIRVCREKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G D RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAG--DVPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206 G QI R SS PAGG TSL + + Sbjct: 178 GSQIGRFSSEPAGGATSLTEVGPR 201 >gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10] gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10] Length = 221 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 105/221 (47%), Positives = 143/221 (64%), Gaps = 12/221 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSVRRLA+E QP SF+F+++S + +++YP ++ SAVIP+L AQ+QEGWVS A Sbjct: 1 MSVRRLAKE--QPESFAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A L+M YIRV E+ATFYT F L PVGT +QVCGTTPCMLRG +LI+VC+ +I Sbjct: 59 IRDIAGRLEMPYIRVYEVATFYTMFNLEPVGT-HLIQVCGTTPCMLRGSGELIDVCKKRI 117 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTGQ 176 K ++DG +W EVEC GAC NAPM+ + G EDL +LE ++D + G+ Sbjct: 118 G-KQHEISADGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAGK 176 Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 I+ GPQ +R +S P G T +L + S G + K K+ Sbjct: 177 --QIKYGPQSERNASEPHG--TKVLTDPSLYDGSRAKKIKL 213 >gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] Length = 303 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 113/200 (56%), Positives = 140/200 (70%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDLT E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSAGE--VPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus Py2] gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus Py2] Length = 229 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 106/203 (52%), Positives = 127/203 (62%), Gaps = 7/203 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59 MSVRRLA E QP SF + E ++I++YP R SAV+PLL Q+ GW+ Sbjct: 1 MSVRRLAAE--QPESFDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI VA L MA IRVLEIATFYT F L PVG + VQ+CGTTPCMLRG E + VC K Sbjct: 59 AIRAVAERLGMANIRVLEIATFYTMFNLEPVG-KYFVQLCGTTPCMLRGAEAIKHVCEKK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + H ++DGT SW EVEC GAC NAPMV I D YEDLTPE E+++D + G+ Sbjct: 118 IGHER-HVSADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 ++ GPQ R S P GG L D Sbjct: 175 VKVGPQNSRRGSEPEGGARVLSD 197 >gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi BJ001] gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi BJ001] Length = 412 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP F+F+ E+A W I++YP R SAVIPLL +AQEQ G W+ + Sbjct: 1 MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA+ L M +IRVLE+ATFYT F L PVG R +Q+CGT PC G ++L ++ Sbjct: 61 AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RFWIQICGTVPCDCCGAKELKAALHDR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGPS-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKKK 213 ++ G QI RISS P + +L D + + G +K Sbjct: 177 VKVGSQIGRISSEPKDAVNTLTDPSLFDGSRVGAWRK 213 >gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131] gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides KD131] Length = 303 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 113/203 (55%), Positives = 140/203 (68%), Gaps = 4/203 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205 GPQ R SS PAGG TSL + S Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGS 200 >gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029] gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides ATCC 17029] Length = 303 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 222 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 100/202 (49%), Positives = 127/202 (62%), Gaps = 7/202 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS RRLAE QP SF+F+ ES ++++YP R SAVI LL +AQ+Q W+ R Sbjct: 1 MSNRRLAE--IQPDSFAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRP 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA++L M YIRVLE+ATFYT F L PVG +Q CGTTPC++ G + + V + Sbjct: 59 AIEKVADMLHMPYIRVLEVATFYTMFNLEPVGRYY-IQFCGTTPCLIAGSDDIKAVLEKR 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + SDG SW+EVEC GAC NAPMV I D YEDLTPE ++D + G+ Sbjct: 118 VGPE-GQVTSDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGR--P 174 Query: 180 IRPGPQIDRISSAPAGGLTSLL 201 +R G QI R SS GGLT+L Sbjct: 175 VRIGSQIGRTSSEMHGGLTALT 196 >gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1] gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter sphaeroides 2.4.1] Length = 303 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL QP SF+F+ + W +++YP R SA+IPLL RAQEQEGW+++ AIE Sbjct: 2 LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA++L MAYIR LE+ATFY FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI Sbjct: 60 YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P ++DG SWEEVEC GAC NAPM IGKD YEDL E L +ID FS G+ RP Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177 Query: 183 GPQIDRISSAPAGGLTSLLD 202 GPQ R SS PAGG TSL + Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197 >gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus] Length = 278 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 120/216 (55%), Gaps = 6/216 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 + + + + F F++E+ V +++++YP + Q+++IPLL AQ Q G W+ AA+E Sbjct: 49 HKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWLPLAAME 108 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I+ ++V E+ATFYT F G + +Q+CGTTPCM+ G E + + +++ Sbjct: 109 KVAKIVGQHEMKVYEVATFYTMFNREKRG-KHFIQLCGTTPCMVCGSEDIKKTIMDELGI 167 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181 K +DG + EVEC GAC NAPMV I D +E LTPE ++E+++ G+ + R Sbjct: 168 KNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGR 227 Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 G P ++S G TSL + G + D Sbjct: 228 WGSLPLNGQVSCEGPHGKTSL-EGTPTGPGFMMRKD 262 >gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 252 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 15/211 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + F F+ ++ + E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 39 LQVHRNTADNNVEIPFKFTPQNEAVIAELLKRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118 + VA IL+M +RV E+A+FYT + +PVG + +Q C TTPC L G + +++ Sbjct: 99 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFFIQACTTTPCQLGGCGSDAIVKTIEE 157 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174 + K +DG S+ EVEC GACVNAPMV I D YEDLTPE ++IDA Sbjct: 158 HLGIKQGETTADGLFSYLEVECLGACVNAPMVQINDDYYEDLTPETTRQLIDALRASVSI 217 Query: 175 --GQ-----GDTIRPGP-QIDRISSAPAGGL 197 G+ +PGP R + + G Sbjct: 218 VNGEATVDHAKVPKPGPINSGRQTCENSAGP 248 >gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium radiotolerans JCM 2831] gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium radiotolerans JCM 2831] Length = 457 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 106/217 (48%), Positives = 134/217 (61%), Gaps = 8/217 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 M+ RRLA QP SF+FS E+A W I++YP R SAVI LL RAQEQ G W+ RA Sbjct: 1 MANRRLAPASEQPESFAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AIE VA L M IRVLE+ATFYT F L PVG R +QVCGT PC G L E+ + + Sbjct: 61 AIEAVAAELGMPNIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDSCGARGLKEMLQAR 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + H ++DG SW EVEC GAC NAPMV I +D YEDLTPE L +++D + G+ Sbjct: 120 LGP-AGHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR--P 176 Query: 180 IRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKKK 213 ++ G Q R+SS P G + +L D + + G +K Sbjct: 177 VKVGSQTGRVSSEPQGAVNTLTDPTLFDGSRVGAWRK 213 >gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum] gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum] Length = 244 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 120/207 (57%), Gaps = 4/207 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +S E+ + F F++E+ +++++YP QSA+IPLL AQ Q G W+S Sbjct: 34 LSRHIETEDNNDHTPFDFNQENLKKAEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLK 93 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA+I + + E+A+FYT F + VG VQVC TTPCMLRG E++++ CR+ Sbjct: 94 AMDKVAHICGIPPMTAYEVASFYTMFNRTKVGQNF-VQVCTTTPCMLRGSEEIVKACRSN 152 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + +D + EVEC GACVNAPM+ + D YEDLTPE ++++ +T Sbjct: 153 LGIEVGETTADNKFTLVEVECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIK--NNET 210 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206 + GPQ R ++ G T+LL+ + Sbjct: 211 TKIGPQTHRKAAEGPHGKTTLLEPPTG 237 >gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum] Length = 249 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 4/207 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +S ++ + F F+EE+ V+ +IS+YPP QSA+IPLL AQ Q G W+S Sbjct: 39 LSRHIDTDDNNDHTPFDFTEENMKKVDTIISKYPPKYRQSAMIPLLDLAQRQNGGWISLK 98 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA I+ +A + E+A+FYT F + +G + VQVC TTPCMLRG ++ C++ Sbjct: 99 AMDKVAEIIGVAPMVAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTDILNACKHH 157 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 ++ D + EVEC GACVNAPM+ I D YEDLTPE ++ ++ + + Sbjct: 158 LNINVGETTKDEKFTLVEVECLGACVNAPMICINDDYYEDLTPETMKNLLTQIE--KSEP 215 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206 + GPQ R ++ G T+LL+ + Sbjct: 216 TKVGPQNHRKAAEGPQGKTTLLEAPTG 242 >gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1] gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1] Length = 229 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 14/216 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + F+++ E+A ++I+RYPP R QSAV+PLL AQ Q +GW+ Sbjct: 10 EAETRARWGGFAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 +E + L MAYIRV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + ++E C Sbjct: 70 PVMEYIGAQLGMAYIRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVLEACYK 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K K +DG + EVEC GAC NAPMV I D YEDLT + + ++D + G Sbjct: 129 K-GLKKGATTADGLFTLTEVECLGACANAPMVQINDDNYEDLTFDSMTAVLDTLAAG--G 185 Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKK 211 + GPQ++R +S P GG T+L + N RG+ Sbjct: 186 QPKIGPQVERQTSCPEGGPTTLQEMVSENHDYRGRW 221 >gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum] Length = 263 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 121/252 (48%), Gaps = 51/252 (20%) Query: 1 MSVRR-----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW 55 MS RR + FSF+ ++ ++E++ RYPP ++AV+PLL Q Q G+ Sbjct: 1 MSQRRSSSCMNTPQNDPSIPFSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGF 60 Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 S + + VA IL+M +RV E+ATFYT + PVG + H+QVC TTPCML + +++ Sbjct: 61 ASISVMNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYHLQVCTTTPCMLCDSDSVMQA 119 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST- 174 + KP + DG ++ EVEC GACVN PMV I D YEDLT E + ++++A Sbjct: 120 VEKFLGVKPGNTTQDGIFTFSEVECLGACVNGPMVQINDDYYEDLTAESVTKLLEALKAT 179 Query: 175 -----------------------GQGDT---------------------IRPGPQIDRIS 190 G+G PGP R++ Sbjct: 180 ADSLPEQAVTWDAPAPTPTPGPKGEGIAGTDAESAIGKLLDKVVNGVRIPAPGPLSGRVT 239 Query: 191 SAPAGGLTSLLD 202 PA LTSL + Sbjct: 240 CEPASKLTSLTE 251 >gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170] gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170] Length = 208 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 3/190 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP++F+F+ E+ ++++YP R +S V+PLL AQ Q+GWVS AAIE V + Sbjct: 10 QPATFAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTP 69 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +RVLE+ATFYT ++LSP G R H++VC PC LRG ++++ R+++ + DG Sbjct: 70 RMRVLEVATFYTMYKLSPKG-RHHIEVCTNLPCWLRGSDEILRAVRDELGIEVGGETDDG 128 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 S E EC GACVNAPM+ IG D YEDLT E + E++ G+ + PG Q R + Sbjct: 129 LFSLAEAECLGACVNAPMLQIGDDYYEDLTYESVRELVRKLKVGE--PVTPGSQSGRQGA 186 Query: 192 APAGGLTSLL 201 P GG T+L Sbjct: 187 CPEGGPTTLK 196 >gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter sp. SD-21] gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter sp. SD-21] Length = 223 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 133/227 (58%), Gaps = 19/227 (8%) Query: 1 MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52 M+ R A + + +F F+E ++ I+RYP R +SAV+PLL AQ Q Sbjct: 1 MADRNPAPDTPELRERWGAFEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVGEE 60 Query: 53 ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 +GW+ IE VA+ LDM IRVLE+A+FY + + PVG + HVQVCGTTPCMLRG Sbjct: 61 TDTQGWLPLPVIEYVADYLDMPVIRVLEVASFYFMYNMVPVG-KYHVQVCGTTPCMLRGS 119 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + L E C+ + K H + DG + EVEC G C APMV I D YEDLTPERL+EI+ Sbjct: 120 DGLFETCKKR-GMKKGHVSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDEIL 178 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKKK 212 D + G+ + G Q R +S PAGG T+L +D N RG+ K Sbjct: 179 DELAAGK--QPKSGTQEPGRHTSEPAGGPTTLKEMVDANHDYRGEWK 223 >gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica] Length = 238 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 124/221 (56%), Gaps = 10/221 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEG-WVSR 58 + V R +E F ++EE+ + + + ++YP +A ++P+L AQ Q G W+ Sbjct: 21 IFVHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLAQRQYGGWLPL 80 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVC 116 + ++ VA LD+ IRV E+ATFYT ++ PVG + H+Q+CGTTPCM+ G +K+ E Sbjct: 81 SVMDAVAATLDVPPIRVYEVATFYTMYKRVPVG-KYHIQLCGTTPCMIGGCGAKKIKEAI 139 Query: 117 RNKIHQKPL--HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 ++ SD S+EEVEC GACVNAPMV I D YEDLT + ++ I+ Sbjct: 140 LEEVGIGHHNDELTSDKMFSYEEVECLGACVNAPMVQINDDYYEDLTEQDMKTILRDLR- 198 Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + R GP+ R+SS P GG TSL + G +DD Sbjct: 199 -KDGFSRKGPRNGRVSSEPLGGATSLTE-PPTGPGFGVRDD 237 >gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633] gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633] Length = 346 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 10/222 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS RR+A E QP SF+F+E+S V +++YP R SAVIPLL AQ+Q+ WVS A Sbjct: 1 MSARRIAAE--QPESFAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A M YIRV E+ATFYT F L G + +QVCGTTPC LRG + L VC KI Sbjct: 59 MREIAARCGMPYIRVYEVATFYTMFNLEQTG-KHLIQVCGTTPCWLRGADDLKAVCEKKI 117 Query: 121 HQKP-LHRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175 +K H +SDG L+WEEVEC GAC NAPMV I G YEDLT E LE+++D G Sbjct: 118 GKKGREHVSSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAG 177 Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + ++ GP R S P L + S G + K K+ Sbjct: 178 K--EVKAGPISGRSCSEPTQATVKTLVDESLYDGSRAKKIKL 217 >gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] Length = 261 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 5/210 (2%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 S + + F F+EE+ VN+++S+YP + QS +IPLL AQ Q G W+ AA Sbjct: 31 SFHINTPDNTPETYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 ++ VA I+ A RV E+A+FYT F + VG + +Q+CGTTPCM+ G E + + + Sbjct: 91 MDKVAQIVGAAPSRVYEVASFYTMFNRTKVG-KYFIQLCGTTPCMICGSEDIKKTIEKHL 149 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K DG + EVEC GAC NAPM+ + D YE L + + E+++A G+ + Sbjct: 150 GIKNGETTKDGMFTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAGKPPAM 209 Query: 181 -RPG--PQIDRISSAPAGGLTSLLDNNSKK 207 + G P ++S G TSL + + K Sbjct: 210 GKWGSLPMNGQVSCEGPLGKTSLFEVEAPK 239 >gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4] gi|74851521|sp|Q54F10|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial; Flags: Precursor gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4] Length = 247 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +S E+ + + F F++E+ + V +++++YP QSA+IPLL AQ Q G W+S Sbjct: 37 LSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLR 96 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA+I +A + E+A+FYT F + +G VQVC TTPCMLRG ++I+ C++ Sbjct: 97 AMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENF-VQVCTTTPCMLRGSGEIIKTCKSH 155 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + D + EVEC GACVNAPM+ I D YEDLT ++D + Sbjct: 156 LGIQVGETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNK--P 213 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + GPQ R ++ G T+LL+ G +DD Sbjct: 214 TKIGPQTHRKAAEGPQGKTTLLEPPV---GPTCRDD 246 >gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis] Length = 267 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 11/217 (5%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 + + + F F+ E+ V+E++ RYP + QSAV+PLL AQ Q G ++ AA+ Sbjct: 35 HYDSPDNNVDTPFDFTAENYRRVHEIMKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMN 94 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA IL+M ++V E+ TFYT ++ VG + +Q CGTTPCML G E++ + ++ Sbjct: 95 KVAEILEMPPVKVYEVVTFYTMYRTEKVG-KFFIQACGTTPCMLCGSEEIFQTLEKELGI 153 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-- 180 K DG S +VEC GAC NAPMV I D YE LTP+ E+++ + +G Sbjct: 154 KDGETTKDGMFSLLKVECLGACANAPMVQINDDYYECLTPKTTVELLN-YIRKEGKLPPL 212 Query: 181 -RPG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 + G P + S G T+L RGK ++ Sbjct: 213 NKSGSKPMNGQESCEGINGQTTLKGE---IRGKYCRE 246 >gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 216 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G Sbjct: 1 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++ Sbjct: 61 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 119 Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ ++DG + EVEC G C NAP++ + D YEDL R E+I+A Sbjct: 120 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 +GD +PGP IDR+ +APAGG +L D+ + R + Sbjct: 180 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 215 >gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC 49814] gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC 49814] Length = 366 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 105/213 (49%), Positives = 137/213 (64%), Gaps = 7/213 (3%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA 60 S+RR E SF+F E+ + +S+YP R +SAVIP+L AQ + +GW+S A Sbjct: 3 SIRRFDIEAG-GESFAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPA 61 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L MAYIRV E+ATFYT F++ PVG H+QVCGTTPCMLRG + L++VC++KI Sbjct: 62 MREVADRLGMAYIRVYEVATFYTMFRMQPVGE-FHIQVCGTTPCMLRGSDDLMKVCKSKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 +K H ++G LSWEEVEC GACVNAPM I YEDL + ++D F G+ Sbjct: 121 GEK-GHVGANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKN--P 177 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 PG + DR +SAP GGLTSLLD + G K Sbjct: 178 APGTRADRKNSAPEGGLTSLLDE-TLYDGSMAK 209 >gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01] gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01] gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-03] gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-07] gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-22] gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-26] gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-32] gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO 3283-12] Length = 213 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 10/207 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65 QP SF+F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A Sbjct: 10 QPESFAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-P 124 + L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 ++DG + EVEC GAC NAP++ + D YED+ R E +I G+ GP Sbjct: 129 GETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGR--KPEAGP 186 Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211 I+R+ SAP GG +LL+ ++ +K Sbjct: 187 TINRMCSAPEGGRKTLLETSASSPDQK 213 >gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter sp. SXCC-1] gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter sp. SXCC-1] Length = 216 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 126/215 (58%), Gaps = 10/215 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS + A E +P+ F F ++S + V+++YPP R S V+PLL Q+Q G Sbjct: 1 MSAQPSAPEGAEPTHFEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 W+ R A++VVA L+MA IRV E+ATFY F P+G R H+QVC TT C LRG + + Sbjct: 61 WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVTA 119 Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ K ++DG + EVEC GAC NAP++ + D YEDL R EE+I A Sbjct: 120 ACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALK 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 G+ PGP IDR++SAPAGG L+ + ++K Sbjct: 180 RGE--RPTPGPTIDRLNSAPAGGRKVLVGDMAQKP 212 >gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis CGDNIH1] gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis CGDNIH1] Length = 227 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 10/206 (4%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAA 60 E +QP+ FSF +S + ++++YPP+R SAV+PLL AQ Q G W+ RAA Sbjct: 11 GREPWQPAEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAA 70 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 ++ +A L MA IRV E+ATFY + PVG R H+Q+C TTPC LRG ++++ CR+ Sbjct: 71 MDEIARRLGMAPIRVYEVATFYFMYNTRPVG-RHHLQLCTTTPCWLRGSDEVVAACRSAT 129 Query: 121 HQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + DG + EVEC GACVNAP++ + D YED+ R +++A G+ Sbjct: 130 GIQGWGETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGE--R 187 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205 PG R +SAP GG T+L D S Sbjct: 188 PTPGSMSGRQNSAPEGGPTTLRDVPS 213 >gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii ATCC 23769] Length = 219 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 11/222 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS + + +P++F+F ES + +++++YPP R S VIPLL Q+Q G Sbjct: 1 MSAQSNIPHDAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSA 60 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ VA+ L+MA IRV E+ATFY F P+G + H+QVC TT C LRG + + Sbjct: 61 WVPRVAMDAVAHRLEMAPIRVYEVATFYLMFNTKPIG-KYHLQVCTTTSCWLRGSDDVTA 119 Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ ++DG + EVEC GAC NAP++ + D YED+ R E+I A Sbjct: 120 ACKAATGIDAFGGTSADGMFTMTEVECLGACANAPILQVDDDYYEDMDGPRTTELIAALR 179 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 G+ + GP IDR+ SAP GG +LLD+ + +G +D+ Sbjct: 180 RGE--RPKAGPTIDRMDSAPVGGRKTLLDSAAG-QGTGTQDN 218 >gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter diazotrophicus PAl 5] Length = 219 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS ++ QPSSF+F ES + ++ +YPP R S +PLL AQ+Q G Sbjct: 4 MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 63 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ +A L++A IRV E+ATFY F P+G R H+QVC TT C LRG + ++ Sbjct: 64 WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 122 Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ ++DG + EVEC G C NAP++ + D YEDL R E+I+A Sbjct: 123 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 182 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 +GD +PGP IDR+ +APAGG +L D+ + R + Sbjct: 183 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 218 >gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 260 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 5/203 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 E F F+ E+ V ++++YP + Q+A+IPLL AQ Q G W+ A+ Sbjct: 32 HIDTPENNLEVHFDFTLENYDRVKYIMAKYPNNYKQAAMIPLLDLAQRQHGGWLPLTAMH 91 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I ++A +RV E+A+FYT F +PVG + +Q+CGTTPCM+ G E + + + Sbjct: 92 KVAAICEVAPVRVYEVASFYTMFNRNPVG-KYFIQLCGTTPCMICGSEDIKQTIEKHLGI 150 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181 K DG + EVEC GAC NAPMV + D YE LTP+ ++++ G + + Sbjct: 151 KNGETTKDGLFTLLEVECLGACANAPMVQLNDDYYECLTPDTTIALLESCKAGNPPAMGK 210 Query: 182 PG--PQIDRISSAPAGGLTSLLD 202 G P ++S G TSL + Sbjct: 211 WGSLPMNGQVSCEGPKGKTSLKE 233 >gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter litoralis HTCC2594] gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Erythrobacter litoralis HTCC2594] Length = 222 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 19/226 (8%) Query: 1 MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52 M+ R LA + + +F F+ + ++ I++YP R +SAV+PLL AQ Q Sbjct: 1 MADRSLAADTPELRERWGNFVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVGEE 60 Query: 53 ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 +GW+ +E VA+ LDM IRV+E+ATFY + L PVG + HVQVCGTTPCMLRG Sbjct: 61 TNTQGWLPLPVMEYVADYLDMPVIRVVEVATFYFMYNLQPVG-KYHVQVCGTTPCMLRGS 119 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 +++I C+ + + ++DG + EVEC G C APMV I D YEDLTPERL+ ++ Sbjct: 120 DEIIAACKKR-GMEKGRVSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVL 178 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKK 211 DA + G+ + G Q R +S P GG T+L +D N R + Sbjct: 179 DALAAGE--QPKTGTQEPGRHTSEPLGGPTTLKEMVDANHDYRSEW 222 >gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes aegypti] Length = 180 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IPLL AQ Q GW+ +A+ VA+IL + +RV E+ATFYT F P GT HVQVC T Sbjct: 1 MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTT 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 TPC LRG ++++ C+ K+ DG + EVEC GACVNAPM+ + D YEDLT Sbjct: 60 TPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLT 119 Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 + EI+ G+ RPGP+ R +S P GGLTSL + Sbjct: 120 AKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTEEPKG 162 >gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC 15444] gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC 15444] Length = 257 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 103/203 (50%), Positives = 132/203 (65%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRA 59 M++RR E SFSF E+ + ++YP + +SAVIP+L AQ + GW+S Sbjct: 1 MALRRFDLEAG-GDSFSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEP 59 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA+ L+M Y+RV E+ATFYT F+L PVG + HVQ+CGTTPC LRG E L EVC + Sbjct: 60 AMREVADRLEMPYMRVYEVATFYTMFRLQPVG-KFHVQLCGTTPCQLRGAENLKEVCTRE 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I K ++ D LSWEEVEC GACVNAPMV I D YEDLTP+ L +II G Sbjct: 119 IG-KQMYVTDDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNG--VE 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 + PGPQIDR++SAP GG +L + Sbjct: 176 VTPGPQIDRVNSAPEGGNATLTE 198 >gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001] gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001] Length = 213 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 10/207 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65 QP SF F +ES + V+ +YP R SAV+PLL AQ Q G W+ A++ +A Sbjct: 10 QPDSFVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-P 124 + L+MA IRV E+A+FYT F P+G R H+QVC TTPC LRG + + E CR Sbjct: 70 HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 + DG + EVEC GAC NAP++ + D YED+ R E +I G+ GP Sbjct: 129 GETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRH--PEAGP 186 Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211 I+R+ SAP GG +LL+ ++ +K Sbjct: 187 AINRMCSAPEGGRKTLLETSASSSDQK 213 >gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 222 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 23/228 (10%) Query: 1 MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52 M+ R E P SF+++ E+A E+++RYP R +SAV+PLL AQ Q Sbjct: 1 MADR--HPEPVTPELVARWGSFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVG 58 Query: 53 -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107 +GW+ +E VA LDM IRVLE+ATFYT + + PVG R HVQVCGTTPCMLR Sbjct: 59 AEENTQGWLPMPVMEYVARYLDMPIIRVLEVATFYTMYNIQPVG-RFHVQVCGTTPCMLR 117 Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 G + ++ C + K H DG + EVEC G C +APMV I D YEDLT +RL Sbjct: 118 GSDDILSACYAR-GLKKGHTTKDGLFTLTEVECMGNCSSAPMVQINDDNYEDLTADRLNF 176 Query: 168 IIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLL---DNNSKKRGKK 211 ++D + G+ + G Q R + P GG TSL N RG+ Sbjct: 177 VLDELAAGR--QPKAGTQEPGRHTVEPVGGPTSLTAMVTENHDYRGEW 222 >gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii] gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii] Length = 254 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +++ +++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ + Sbjct: 31 LNLHINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + Sbjct: 91 AMNKIAEIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKH 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPMV++ + YEDLTP+R+ EI+ Sbjct: 150 LGVKRNEVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIV 209 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 + +G+ G Q RI PAGG T+LL + Sbjct: 210 EMLR--KGEKPPVGTQNPTRIKCGPAGGNTTLLSDPKPPP 247 >gi|255644244|gb|ACU22686.1| unknown [Glycine max] Length = 251 Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + F+E + V E++S YP + QSA IPLL AQ+Q G W+ + Sbjct: 28 LNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVS 87 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA I+++ IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + E Sbjct: 88 AMDAVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKH 146 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI+ Sbjct: 147 LGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 206 Query: 170 DAFSTGQGDTIRPGPQIDRI-SSAPAGGLTSLLDNNSKKR 208 + +G+ G Q R S P GG T+LL Sbjct: 207 EKLR--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244 >gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1] gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1] Length = 222 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 127/226 (56%), Gaps = 19/226 (8%) Query: 1 MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52 M+ R A + + SF +S+E+ + I++YP R +SAV+ LL Q Q Sbjct: 1 MADRTPAPDTPELRARWGSFEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVGEE 60 Query: 53 ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 +GW+ IE +A+ LDM IRVLE+ATFY + + PVG + HVQVCGTTPCMLRG Sbjct: 61 TDTQGWLPLPVIEYIADYLDMPVIRVLEVATFYFMYNMKPVG-KYHVQVCGTTPCMLRGS 119 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + +I C+ + + DG + EVEC G C APMV I D YEDLT ERL+ ++ Sbjct: 120 DDIISACKKR-GMGFGKVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVL 178 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKK 211 DA + G+ + G Q R +S P+GG T+L +D N RG Sbjct: 179 DALAAGE--QPKTGTQEPGRHTSEPSGGPTTLKEMVDANHDYRGDW 222 >gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique HTCC1062] gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1062] Length = 202 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 93/203 (45%), Positives = 129/203 (63%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q W+ A Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T Sbjct: 118 ISENENELSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +LLD Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198 >gi|255627569|gb|ACU14129.1| unknown [Glycine max] Length = 251 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + F+E + V E++S YP + QSA IPLL AQ+Q G W+ + Sbjct: 28 LNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVS 87 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA I+++ IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + E Sbjct: 88 AMDAVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKH 146 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI+ Sbjct: 147 LGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIV 206 Query: 170 DAFSTGQGDTIRPGPQIDRI-SSAPAGGLTSLLDNNSKKR 208 + +G+ G Q R S P GG T+LL Sbjct: 207 EKLR--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244 >gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium bathyomarinum JL354] Length = 222 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 131/226 (57%), Gaps = 19/226 (8%) Query: 1 MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52 M+ R A + + +F+F+ + + ++RYP R +SAV+PLL AQ Q Sbjct: 1 MADRTPAPDTPELRERWGNFAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVGEE 60 Query: 53 ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 +GW+ IE VAN LDM IRVLE+ATFY + ++PVG + HVQVCGTTPCMLRG Sbjct: 61 TDTQGWLPLPVIEYVANYLDMPVIRVLEVATFYFMYNMTPVG-KYHVQVCGTTPCMLRGS 119 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + +I C+ + K + DG + EVEC G C APMV I D YEDLT ERL+ ++ Sbjct: 120 DDIIAACKKR-GMKKGEVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVL 178 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLD---NNSKKRGKK 211 DA + +G+ + G Q R +S P+GG T+L + N RG+ Sbjct: 179 DALA--KGEQPKTGTQEPGRHTSEPSGGPTTLKEMVTENHDYRGEW 222 >gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus] Length = 211 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 1/159 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 48 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 K D + EVEC GACVNAPMV I + Y Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYVR 205 >gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii] gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii] Length = 222 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 15/217 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 +++ + + F F++ + E++S YP + QSAVIPLL AQ+Q G W+ +A+ Sbjct: 2 HINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMN 61 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A I+ + IRV E+ATFY+ F + VG + H+QVCGTTPCM+RG + + Sbjct: 62 KIAEIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGV 120 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172 K DG S E+EC G CVNAPMV++ + YEDLTP+R+ EI++ Sbjct: 121 KRNEVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEML 180 Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 +G+ G Q RI PAGG T+LL + Sbjct: 181 R--KGEKPPVGTQNPTRIKCGPAGGNTTLLSDPKPPP 215 >gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha proteobacterium HIMB114] gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha proteobacterium HIMB114] Length = 201 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 6/206 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS + +A+ QPSSF+F++E+ + EV+ +YP ++ +SAV+PLL AQ Q W+ A Sbjct: 1 MSGKHVAK--NQPSSFAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI++++++L + YI+V E+ATFYT + L+PVG + VQVC TTPCM+RG K++EVC+ Sbjct: 59 AIQLISDMLGVTYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCMIRGSGKVVEVCKKH 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I +K H N + SW EVEC GACVNAPMV I D +EDL E+ E II F G+ Sbjct: 118 ISEKQGHLNKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGKLPN 177 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205 I G Q R S P T+LL N+ Sbjct: 178 I--GSQSGRKGSEPIQNRTTLLKKNA 201 >gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 117/201 (58%), Gaps = 6/201 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++ Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++ Sbjct: 84 KIAKILEIPEMDVYETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181 K +DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199 Query: 182 PGPQIDRISSAPAGGLTSLLD 202 GPQ R ++ G T+L + Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220 >gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium aromaticivorans DSM 12444] gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM 12444] Length = 222 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 16/222 (7%) Query: 2 SVRRLAEE-EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------E 53 + + E + F ++ E+A ++++RYP R +SAV+PLL AQ Q + Sbjct: 5 FIEPDSPELRARWGGFEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQ 64 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 GW+ +E VA+ LDM IRV+E+ATFYT + ++P+G R HVQVCGTTPCMLRG + ++ Sbjct: 65 GWLPIPVMEYVASYLDMPVIRVVEVATFYTMYNIAPIG-RFHVQVCGTTPCMLRGSDDIL 123 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ K K H DG + EVEC G C +APMV I D YEDLT +E I+D + Sbjct: 124 AACKGK-GLKKGHTTPDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELA 182 Query: 174 TGQGDTIRPGPQ-IDRISSAPAGG---LTSLLDNNSKKRGKK 211 G+ + G Q R + PAG LT+++ N RG+ Sbjct: 183 EGK--QPKTGTQLPGRHTVEPAGALSNLTAMVTENHDYRGEW 222 >gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis] gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis] Length = 255 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + FSE++ V E+IS YP + QSAVIPLL AQ+Q G W+ + Sbjct: 32 LNYHIDSPDNNPNIPWEFSEKNKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 91 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA ++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + Sbjct: 92 AMDAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKH 150 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+ Sbjct: 151 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 210 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 D G+ G Q RI S P GG T+L Sbjct: 211 DMLRRGE--KPPHGTQNPKRIKSGPEGGNTTLNGEPKPPP 248 >gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus ovalis] Length = 259 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 6/202 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 E + F F+ E+ +N ++ RYP + +SAV+ LL AQ+Q G +++ AA+ Sbjct: 29 HHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLAAMN 88 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA IL+M + V E+A FY+ F VG + +Q+CGTTPC+L G +++ C + + Sbjct: 89 KVAKILEMTNLNVYEVAAFYSMFNREKVG-KIRLQICGTTPCLLCGARDIMKACEDHLGI 147 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181 K DG + EEVEC G C NAPM+ + + YEDLTPE + E+++ F +G+ I+ Sbjct: 148 KMGGTTKDGMFTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFR--KGEEIK 205 Query: 182 PGPQI-DRISSAPAGGLTSLLD 202 GPQ R ++ G T+L D Sbjct: 206 AGPQTKGRKNAEGPLGRTTLND 227 >gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503] gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503] Length = 221 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 104/218 (47%), Positives = 131/218 (60%), Gaps = 7/218 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+ R + QP SF ++E++ W + I+++P R SAVIP L RAQ+QEGWVS A Sbjct: 1 MADR--SPARQQPDSFQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPA 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +E +A L M YIRV E+ATFYT F L PVGT VQVCGTTPCMLRG E LIEVC I Sbjct: 59 MEAIATQLGMPYIRVYEVATFYTMFNLKPVGT-YFVQVCGTTPCMLRGSESLIEVCERVI 117 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + G LSW EVEC GAC NAPM I Y+DLTPE+ EEI+ + +G+ + Sbjct: 118 GPQ-GAITESGHLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEIL--LTLDKGEAV 174 Query: 181 RPGP-QIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PG R +S P G T+L D + K D++ Sbjct: 175 APGVFNPARHTSDPEGDNTTLTDESLYDGSAAKPIDRL 212 >gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena thermophila] gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena thermophila SB210] Length = 274 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ R ++ F F+ E+ + +++++YP + +SAV+PLL QEQ WV + Sbjct: 27 LAAHRKNDDNSDSVPFEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLS 86 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A +L+M I V E+ATFYT + PVG + H+Q+CGTTPC L G ++ + Sbjct: 87 AMKKIAKLLEMPEIDVYEVATFYTMYNREPVG-KFHLQICGTTPCQLCGSREITKAIEEY 145 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGD 178 K H ++DG + EEVEC GAC NAPM+ + YEDLT E + +++ +G Sbjct: 146 TQTKLGHTSADGKWTLEEVECLGACSNAPMIQVNNKWVYEDLTTENVVKLLKDLESG--- 202 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNN 204 T + GPQ R G ++L + + Sbjct: 203 TDKKGPQNHRNQVEGPLGRSTLKEKD 228 >gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322] Length = 215 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 7/214 (3%) Query: 1 MSVR-RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSR 58 MS+ R+AE+ QP+SF+F+ E+ + +I++YP R SAV+PLL AQ Q W+ Sbjct: 1 MSIEARIAED--QPNSFAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPM 58 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 AIE++A+ LDMA IRVLE+ATFYT F L PVG + +Q C TTPC LRG ++++ ++ Sbjct: 59 KAIELIADKLDMAKIRVLEVATFYTMFNLKPVG-KYFLQACTTTPCWLRGSDEMMRCIKD 117 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + + G S EVEC GACVNAP++ + D YEDL + ++D+ + Sbjct: 118 RYGITSGQTSDCGRFSLLEVECLGACVNAPILQVNDDFYEDLNYQSTGALLDSLE--KDA 175 Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212 + G + R S +GG TSL KK K K Sbjct: 176 PLAVGSVLGRSGSEASGGATSLNAIKPKKTAKAK 209 >gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1002] gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique HTCC1002] Length = 202 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MS+R+ A+E QP F F+ +S E+IS+YP + QSAV+ LL AQ+Q W+ A Sbjct: 1 MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ + LDM YI+V E+ATFYT + LSPVG + +QVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + +++ + SW EVEC GACVNAPM+ I D YEDL E+ +I+D G+ T Sbjct: 118 ISENENELSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +LLD Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198 >gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199] gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199] Length = 223 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MS + +AE++ QP+SF+++ +S + ++++YP R SAV+PLL AQ Q W+ A Sbjct: 1 MSSKPIAEDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLA 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A LDMA IRVLE+ATFYT + L+PVG + +Q C TTPC LRG ++++ ++K Sbjct: 61 AIDAIAARLDMARIRVLEVATFYTMYNLAPVG-KWFLQACTTTPCWLRGSDQMMRCIKDK 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + R +DG S EVEC GACVNAP++ + D YED+ E +IDA G+ Sbjct: 120 LGLDNHGRTADGQFSLLEVECLGACVNAPILQVNDDFYEDMDYETTATLIDALKRGEPPV 179 Query: 180 IRPGPQIDRISSAPAGGLTSL 200 + G R +S G TSL Sbjct: 180 V--GSMKGRQTSQSIAGPTSL 198 >gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp. lyrata] gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp. lyrata] Length = 255 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 15/216 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ + Sbjct: 32 LNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQHGGWLPVS 91 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + Sbjct: 92 AMNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDH 150 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI+ Sbjct: 151 LGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 210 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 + +G+ G Q RI P GG T+LL Sbjct: 211 EKLR--KGEKPPHGTQNPKRIKCGPEGGNTTLLGEP 244 >gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium tetraurelia strain d4-2] gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium tetraurelia] gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 117/201 (58%), Gaps = 6/201 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S +A++ Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEAILTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ K++ Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181 K +DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199 Query: 182 PGPQIDRISSAPAGGLTSLLD 202 GPQ R ++ G T+L + Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220 >gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 118/201 (58%), Gaps = 6/201 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R ++ F F++E+ + ++S++P + +S IPLLM AQ+Q ++S +A++ Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G + +I+ +++ Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKAIEQQLNI 142 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181 K ++DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199 Query: 182 PGPQIDRISSAPAGGLTSLLD 202 GPQ R ++ G T+L + Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220 >gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis RB2256] gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis RB2256] Length = 222 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 15/217 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + +F+++ E+A VI+RYP R +SAV+PLL AQ Q +GW+ Sbjct: 10 EAETRARWGAFAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 IE VA LDM +IR E+ATFYT + L+PVG R HVQVCGTTPC+LRG + + C+N Sbjct: 70 PVIEYVAAQLDMPFIRAYEVATFYTMYNLAPVG-RYHVQVCGTTPCLLRGSDDVTAACKN 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + K DG + EVEC G C NAPMV I D YEDL + + I+D + G+ Sbjct: 129 RGMVK-GKTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGK-- 185 Query: 179 TIRPGPQI-DRISSAPAGGLTSL---LDNNSKKRGKK 211 + G Q R +S P GG T+L ++ N R + Sbjct: 186 QPKTGTQNPRRHTSEPEGGPTTLKEMVEANHDYRKEW 222 >gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa] gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa] Length = 254 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ E + F+ + V E+IS YP + QSAVIPLL AQ+Q G W+ + Sbjct: 31 LNYHLNTPENNPDLPWEFTAANKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA ++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + Sbjct: 91 AMNAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALVKH 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+ Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 209 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 + +G+ G Q R P GG T+L Sbjct: 210 EMLR--KGEKPPHGTQNPQRTKCGPEGGNTTLHGEPKPPP 247 >gi|254796983|ref|YP_003081820.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str. Illinois] gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str. Illinois] Length = 172 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 2/171 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62 +R+A QP F FSEE++ V ++++YP SR +SA++PLL Q+Q W+ AA++ Sbjct: 3 KRIAHASIQPDKFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMD 62 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L + I+V E+ +FY+ F +PVG + ++VC TTPC LRG + L + + ++ Sbjct: 63 HVAQLLGLPAIKVYEVVSFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLTKAAKRELGI 121 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 K H D S +EVEC GACVNAP+V I D +E+L + E++ Sbjct: 122 KVGHTTEDNKFSLDEVECLGACVNAPVVQINDDYFENLDEKSFLELLSRLK 172 >gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens] Length = 243 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 18/226 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +S + + F+ + V E++S YP + QSAVIPLL AQ+Q+G W+ Sbjct: 20 LSSHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPLLDLAQQQQGGWLPVQ 79 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A I+ A IRV E+ATFY+ F PVG R H+ VCGTTPCMLRG ++ + Sbjct: 80 AMNRIAEIVGYAPIRVYEVATFYSMFNRQPVG-RYHLLVCGTTPCMLRGSREIEDALLKH 138 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 ++ DG S EVEC G+CVNAPM+++ + YEDLT ER+ E++ Sbjct: 139 LNVARNEVTKDGLFSVGEVECMGSCVNAPMIVVADYSNGVEGYSYNYYEDLTTERVVELV 198 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 + G+ + G Q +RI+ PAGG T+LL R +D Sbjct: 199 EELRQGK--KPKWGTQHPERINCGPAGGNTTLLTEP---RAPACRD 239 >gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas reinhardtii] gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas reinhardtii] gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas reinhardtii] Length = 282 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 27/224 (12%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E +SF FSE + VN++I+RYPP+ QSA+IP+L Q++ G W+S A Sbjct: 48 FNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLSLA 107 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +LDMA IRV E+ATFYT F + +G + HVQ+CGTTPC L+G +K+ E Sbjct: 108 AMNRVAKLLDMAPIRVYEVATFYTMFNRTKIG-KYHVQICGTTPCRLQGSQKIEEAITKH 166 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + DG + E+EC GACVNAPMV I YEDLTP+ + I+ Sbjct: 167 LGIGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNIL 226 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG------------GLTSLL 201 D +G +PG Q R+ + PAG G T+L Sbjct: 227 DTIK--KGGKPKPGSQY-RLKAEPAGAVHGGEKWVPKDGETTLT 267 >gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi] gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi] Length = 260 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 14/224 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 E + F FS ES + +++++YP QS ++PLL AQ Q G W+ AAI Sbjct: 32 HVDTEYNNVNTPFDFSPESYAEIKKILAKYPSKHKQSGILPLLHLAQRQNGGWIPLAAIN 91 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A I ++ V E +FYT F PVG + H+QVC TTPCM+ GC+ ++ + Sbjct: 92 KIAEICEVNPRNVFECVSFYTMFNTQPVG-KYHIQVCITTPCMITGCDNILATLEQHLGI 150 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFS 173 K DG + E+EC G C NAPM+ + D +EDLT R EII+ Sbjct: 151 KLGETTQDGLFTLGEMECMGCCANAPMIAVSDYSNPPEFKYDYFEDLTAVRAIEIIEMLK 210 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLL--DNNSKKRGKKKKDD 215 G+ + G Q R + P GG +LL D + K ++ D+ Sbjct: 211 KGEYPK-QIGSQNGRRYAEPLGGQKTLLFQDGDLPKPYCRELDE 253 >gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25] gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25] Length = 238 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 115/207 (55%), Positives = 141/207 (68%), Gaps = 4/207 (1%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +RRL + QP+SF+F+ +A W I++YP R SA+IPLL RAQEQEGW++RAAIE Sbjct: 2 LRRLHPD--QPASFAFTAANAAWAQLQIAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIE 59 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VAN+L+M +IR LE+ATFY FQL PVG AH+Q+CGT CML G E L+ VCR KI Sbjct: 60 HVANMLEMPFIRALEVATFYFMFQLQPVGAVAHLQICGTLSCMLCGAEDLVSVCRQKIAA 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +P + DG LSWEEVEC GAC NAPM IGKD YEDLT E L ++IDA G D +P Sbjct: 120 QPHSLSDDGKLSWEEVECLGACTNAPMAQIGKDYYEDLTAEGLSDLIDALRAG--DVPQP 177 Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209 GPQ R S+ P GG T L + K+ Sbjct: 178 GPQNGRFSAEPLGGATVLQNTPGDKQA 204 >gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia] Length = 263 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 6/201 (2%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 R ++ F F++E+ + +++++P + +S IPLLM AQ+Q ++S A++ Sbjct: 24 HRNRDDNSDSVPFDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLTAMK 83 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 +A IL++ + V E A+FY+ F VG + H+QVCGTTPC L G +++ K++ Sbjct: 84 KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSRDIMKAIEQKLNI 142 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181 K ++DG + +EVEC GAC NAPM+ + + YEDLTPE ++++ G T + Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199 Query: 182 PGPQIDRISSAPAGGLTSLLD 202 GPQ R ++ G T+L + Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220 >gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 277 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + F++ + VNE++S YP + QS +IP+L AQ+Q G WV A Sbjct: 54 LNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 113 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A I+ +A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + Sbjct: 114 AMDAIAKIVGVAPIRVYEVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDIEDALLEH 172 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ E++ Sbjct: 173 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELV 232 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG+T+LL Sbjct: 233 EMLRRGE--TPPRGTQNPERKNCGPAGGMTTLLGEPKPPP 270 >gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C] gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389] gi|122990931|sp|Q1RJJ1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C] gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389] Length = 167 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++FSF +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L PVG + H+QVC TTPC LRG + +++ C+ K+ K D Sbjct: 66 MRAYEVATFYTMFNLKPVG-KNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S E+EC GACVNAP+V I D YEDLTPE++E IID Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKLR 165 >gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211] gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211] Length = 202 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 6/203 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS++R A++ QP +F F+ S V ++S+YP + QSAV+ LL AQ Q W+ A Sbjct: 1 MSLKRPAKD--QPENFEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A L+M YI+V E+ATFYT + LSPVG VQVC TTPCM+RG KL+E C+ K Sbjct: 59 AMKYIAKFLEMPYIKVYEVATFYTMYNLSPVGN-FFVQVCTTTPCMIRGANKLVEACKEK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + ++D + SW EVEC GACVNAPM+ I D YEDL E+ +I+D +G+T Sbjct: 118 ISENECELSNDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDKI--LKGET 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202 +PG R+++ P +L+D Sbjct: 176 PKPGSYRGRVNNEPENNRKTLMD 198 >gi|18411985|ref|NP_567244.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Arabidopsis thaliana] gi|55584146|sp|O22769|NDUV2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial; Flags: Precursor gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana] gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana] gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis thaliana] Length = 255 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 15/216 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ + Sbjct: 32 LNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVS 91 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + Sbjct: 92 AMNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDH 150 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI+ Sbjct: 151 LGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 210 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 + +G+ G Q RI P GG +LL Sbjct: 211 EKLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 244 >gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f. nagariensis] gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f. nagariensis] Length = 281 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 115/206 (55%), Gaps = 15/206 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +V + E +F F+E + VNE+I+RYPP+ SA+IP+L AQ+Q G W+S A Sbjct: 49 FNVHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLSLA 108 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +LDMA IRV E+ATFYT F + +G + HV +CGTTPC L+G + + E Sbjct: 109 ALNRVAKVLDMAPIRVYEVATFYTMFNRTKIG-KYHVLICGTTPCRLQGAQGIEEAVTKH 167 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + DG + E+EC GACVNAPMV I YEDLTP + I+ Sbjct: 168 LGIHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDLTPSDIVGIL 227 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG 195 D +G +PG Q R + PAG Sbjct: 228 DTIK--KGGKPKPGSQ-HRSKAEPAG 250 >gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens] Length = 275 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 15/215 (6%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 + + F+ + V E++S YP + QSAVIP+L AQ+Q G W+S A Sbjct: 53 FAHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPMLDLAQQQNGGWLSVQA 112 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A I+D A IRV E+ATFY+ F PVG + H+ VCGTTPCMLRG + + + Sbjct: 113 MNRIAEIVDYAPIRVYEVATFYSMFNRQPVG-KYHLLVCGTTPCMLRGSRDIEDALLKHL 171 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170 H DG S E+EC G CVNAPM+++ + YEDLTPER+ E+++ Sbjct: 172 HVARNEVTKDGLFSVGEMECMGCCVNAPMIVVADYSNGVEGYSYNYYEDLTPERVVELVE 231 Query: 171 AFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNN 204 G+ + G Q RI+ PAGG T+LL Sbjct: 232 ELKQGK--KPKWGTQHPKRINCGPAGGTTTLLSEP 264 >gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 284 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 107/254 (42%), Gaps = 56/254 (22%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 ++V R + F F+ ++ + EV+SRYP ++AV+PLL Q Q G+ S + Sbjct: 41 LNVHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL+M +RV E+ATFYT + PVG + HVQVC T C + + Sbjct: 101 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTT-------------ACEDVL 146 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173 DG ++ EVEC GAC NAPMV I D YEDLT + ++ A Sbjct: 147 GVHHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYDSTVNLLKALKHAAQATG 206 Query: 174 -----------TGQG------------------------DTIRPGPQIDRISSAPAGGLT 198 G+G PGP R S PAGGLT Sbjct: 207 AQPGDKGLASGAGKGTATGEGAGDAVANAQARQYEAGGVKVPSPGPLSGRASCEPAGGLT 266 Query: 199 SLLDNNSKKRGKKK 212 L +K Sbjct: 267 CLTSEPWGNETLRK 280 >gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens] Length = 265 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 5/212 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + ++F FS ++ + ++ +YP + S +IPLL AQ Q G W+ A Sbjct: 34 LAQHVNTGDNTKETTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLA 93 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA + A +RV E+ATFYT F VGT +Q+CGTTPCM+ G E + + + Sbjct: 94 AMDKVAKYVGCAPMRVYEVATFYTMFNREQVGT-YFIQLCGTTPCMVCGSEAIKKSIEDH 152 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + K + DG + EVEC GAC NAPM+ + D YE LTP+ + +++A G+ Sbjct: 153 LGIKEGETSKDGLFTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGEPHA 212 Query: 180 I-RPG--PQIDRISSAPAGGLTSLLDNNSKKR 208 + R G P ++S G TSL + Sbjct: 213 MGRWGSLPMNGQVSCEGPAGKTSLASAPGPQP 244 >gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana] gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana] Length = 244 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 15/215 (6%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 S + + + FSE + V E++S YP + QSAVIPLL AQ+Q G W+ +A Sbjct: 22 SQHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSA 81 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + Sbjct: 82 MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 140 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170 K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++ Sbjct: 141 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 200 Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 +G+ G Q RI P GG +LL Sbjct: 201 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 233 >gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545] Length = 245 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 82/216 (37%), Positives = 112/216 (51%), Gaps = 15/216 (6%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 S R + F+E +A V E++ RYPP+ +SA+IPLL AQ+Q G ++S Sbjct: 1 SQHRDTPTNNDALKWDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQV 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL++A IRV E+ATFY+ F PVG + HV VCGTTPCMLRG ++ + Sbjct: 61 MNRVAEILEVAPIRVFEVATFYSMFNRQPVG-KYHVMVCGTTPCMLRGSREVNAALEQHL 119 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170 K DG + E+EC G+CVNAPM+ + + YEDLTP ++ Sbjct: 120 GIKKFENTPDGMFTLGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADAVAVVK 179 Query: 171 AFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 A GQ R G Q R + P GG +L Sbjct: 180 ALKAGQ--KPRVGSQ-HRDKAEPMGGQQTLTSEPPG 212 >gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis] Length = 253 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + F+E + V E+I+ YP + QSAVI LL AQ+Q G W+ + Sbjct: 30 LNYHLDSPDNNPNVPWEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVS 89 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +L+MA IRV E+ATFYT F + VG + H+ VCGTTPCM+RG + Sbjct: 90 AMNKVAEVLEMAPIRVFEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSCDIEGAILKH 148 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+ Sbjct: 149 LGVKRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIV 208 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q DRI + PAGG T+LL Sbjct: 209 EMLRRGE--TPPVGTQNPDRIMAGPAGGNTTLLSEPKPPP 246 >gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae] gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae] Length = 236 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 4/200 (2%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F F+EE+ V ++ YP + + A+IPLL AQ Q+GW+S +A++ VA+++ + ++ Sbjct: 36 EFKFTEENKRRVKALLVWYPEAEWKGALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMK 95 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 E A FYT F + P G + ++VC +TPC LRG + + +C + K + D + Sbjct: 96 AYEAAQFYTMFFMKPRG-KYVIRVCTSTPCKLRGGDDIYALCETILKLKHGETSPDMQFT 154 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 ++ C GACVNAP++ + D YEDL + +++I++ + GP+ R SS P Sbjct: 155 LKDDYCLGACVNAPVLSVNDDFYEDLDEKSVKQILEDLKNDK--LPPSGPRNGRYSSEPK 212 Query: 195 GGLTSLLDNNSKKRGKKKKD 214 GGLTSL + G ++ Sbjct: 213 GGLTSLKE-PPPPPGFMMQE 231 >gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa] gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa] Length = 254 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + FS + V E++S YP + QSAVIPLL AQ+Q G W+ + Sbjct: 31 LNYHIDTADNNPDLPWEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA ++++A IRV E+ATFY+ F SPVG + H+ VCGTTPCM+RG ++ + Sbjct: 91 AMNAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKH 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+ Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 209 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208 + +G+ G Q RI P GG T+L Sbjct: 210 EMLR--KGEKPPHGTQNPKRIKCGPEGGNTTLHGEPKPPP 247 >gi|225437209|ref|XP_002281655.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera] Length = 254 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 15/216 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + + + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ + Sbjct: 31 LNYHLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + Sbjct: 91 AMDAVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKH 149 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI+ Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIV 209 Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 + G+ G Q R P GG T+LL Sbjct: 210 EMLRRGE--KPPHGTQNPQRTRCGPEGGNTTLLGEP 243 >gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17] gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17] Length = 224 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 15/217 (6%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58 AE + +F++++E+ NE+++RYP R QS IP L AQ Q +GW+ Sbjct: 10 EAEVRARWGNFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPV 69 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 IE VA L +AY+R+ E+ATFYT F L+PVG R HVQVCGTTPCMLRG + ++ C+N Sbjct: 70 PVIEFVARQLGVAYMRIYEVATFYTMFNLAPVG-RYHVQVCGTTPCMLRGSDDVLAACKN 128 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 K K DG + EVEC G C +APMV I D +EDL +R I++A + G+ Sbjct: 129 KGLIK-GKTTPDGLFTLTEVECMGNCASAPMVQINDDNFEDLDYDRTVTILEALARGE-- 185 Query: 179 TIRPGPQ-IDRISSAPAGGLTSLL---DNNSKKRGKK 211 + + G Q R + P GG T+L +N RG+ Sbjct: 186 SPKTGTQEPGRHTVEPLGGPTTLTAMVGDNHDYRGEW 222 >gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group] Length = 274 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV A Sbjct: 51 LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267 >gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group] Length = 274 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV A Sbjct: 51 LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267 >gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group] gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica Group] gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group] gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group] Length = 274 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + F+E + VNE++S YP + QS +IP+L AQ+Q G WV A Sbjct: 51 LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267 >gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi] gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi] Length = 248 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 3/195 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 S F F+ E+ E++S YP + + A++PLL AQ Q GW+ AI+ VA++L + Sbjct: 41 DTSKFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLE 100 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V E+A+FYT F L+PVG + H++VC TTPC LRGC ++++ C +H K + D Sbjct: 101 PFAVWEVASFYTMFNLTPVG-KFHIKVCMTTPCQLRGCAQILQKCEELLHLKAGETSEDM 159 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 + + C GACV+AP++ + D YEDL + +E I+ G + GP+ R ++ Sbjct: 160 EFTLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAG--NVPPCGPRKGRFAN 217 Query: 192 APAGGLTSLLDNNSK 206 P+ G+T+L Sbjct: 218 EPSSGVTTLFIEPPP 232 >gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama] gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str. Miyayama] Length = 181 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62 +R+A QP F FSEE++ V ++++YP SR +SAV+PLL Q Q W+ AA++ Sbjct: 12 KRIAHASIQPDKFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMD 71 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L + I+V E+A+FY+ F +PVG + ++VC TTPC LRG + LIE + ++ Sbjct: 72 HVAQLLGLPVIKVYEVASFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLIEAAKRELGI 130 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 K H+ D S +EVEC GACV+AP+V I D +E+L E++ Sbjct: 131 KVGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELLSRLK 181 >gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba] gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba] Length = 241 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 3/201 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA Sbjct: 27 DATEMRKTLKFEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVA 86 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + Sbjct: 87 ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 145 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D + +E C GACVNAP++ + D YEDL + L I+ + GP+ Sbjct: 146 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPR 203 Query: 186 IDRISSAPAGGLTSLLDNNSK 206 R +S P GGLT+L Sbjct: 204 NGRFASEPKGGLTTLKTEPPP 224 >gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera] Length = 243 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 15/213 (7%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62 + + + F++ + V E++S YP + QSAVIPLL AQ+Q G W+ +A++ Sbjct: 23 HLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMD 82 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG ++ + + Sbjct: 83 AVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 141 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172 K DG S E+EC G CVNAPM+ + + YED+TP+R+ EI++ Sbjct: 142 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEML 201 Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 G+ G Q R P GG T+LL Sbjct: 202 RRGE--KPPHGTQNPQRTRCGPEGGNTTLLGEP 232 >gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford] gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford] Length = 167 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L VG + H+ VC TTPC LRG + ++++C+ K+ K D Sbjct: 66 MRAYEVATFYTMFNLKRVG-KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP++ I D YEDLTPE++E++ID Sbjct: 125 FTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLIDRLQ 165 >gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis] gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis] Length = 247 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 72/201 (35%), Positives = 104/201 (51%), Gaps = 3/201 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A + F F+EE+ V E++ YP + A++PLL AQ Q GW+ AI+ VA Sbjct: 34 DACNMYDKLKFEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVA 93 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V E+A FYT F + P+G + V+VC TTPC LRGC ++ +C + K Sbjct: 94 EVLKLEPFAVWEVANFYTMFNMRPIG-KYRVKVCMTTPCQLRGCADVLRICEKTLDLKDG 152 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + D + C GACVN P++ + D YEDL + E+I+ G+ PGP+ Sbjct: 153 ETSKDMEFTLNTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGK--LPPPGPR 210 Query: 186 IDRISSAPAGGLTSLLDNNSK 206 R +S P G TSLL Sbjct: 211 SGRFASEPITGPTSLLMEAPP 231 >gi|224028933|gb|ACN33542.1| unknown [Zea mays] Length = 281 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV A Sbjct: 58 LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 117 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 118 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 176 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 177 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 236 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 237 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLQGEPKPPP 274 >gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans] gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans] Length = 238 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 3/201 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA Sbjct: 24 NATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVA 83 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + Sbjct: 84 ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 142 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D + +E C GACVNAP++ + D YEDL + L +I+ + GP+ Sbjct: 143 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKILADLRNDK--LPPAGPR 200 Query: 186 IDRISSAPAGGLTSLLDNNSK 206 R + P GGLT+L Sbjct: 201 NGRFACEPKGGLTTLKIKPPP 221 >gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5] gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5] Length = 167 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKQVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++E+IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMEKIIDKLQ 165 >gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis] Length = 293 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 15/206 (7%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 + R + F F++ + E+ISRYP + SAVIPLL AQ+Q GW+S A Sbjct: 49 FNTHRHEAHNNWDTEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGWLSLA 108 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ VA +LDM IRV E+ATFYT F S +G + HV VCGTTPCML+G + + + + Sbjct: 109 AMNRVAKVLDMPEIRVYEVATFYTMFNRSKMG-KYHVMVCGTTPCMLQGAKGIYKALKEH 167 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + DG + E+EC GACVNAPM+ + + YEDLTP II Sbjct: 168 LGIDYGQTTPDGMFTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYEDLTPADTLAII 227 Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG 195 D +G + G Q R + PAG Sbjct: 228 DTLK--KGGKPKVGSQ-HRSKAEPAG 250 >gi|226500344|ref|NP_001140609.1| hypothetical protein LOC100272681 [Zea mays] gi|194700168|gb|ACF84168.1| unknown [Zea mays] Length = 324 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV A Sbjct: 101 LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 160 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 161 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 219 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 220 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 279 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 280 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 317 >gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia] gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia] Length = 241 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 4/209 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A E + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA Sbjct: 27 NATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVA 86 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + Sbjct: 87 ENIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 145 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D + +E C GACVNAP++ + D YEDL + L I+ + GP+ Sbjct: 146 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPR 203 Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 R +S P GGLT+L G + Sbjct: 204 NGRFASEPKGGLTTLK-IPPPPPGFMMQK 231 >gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta] gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta] Length = 238 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 3/208 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A + + F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA Sbjct: 24 DATKMRKTLKFEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVA 83 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + + + E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + Sbjct: 84 ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHG 142 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D + +E C GACVNAP++ + D YEDL + L I+ + GP+ Sbjct: 143 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLASILADLRNDK--LPPAGPR 200 Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKK 213 R +S P GGLT+L +K Sbjct: 201 NGRCASEPKGGLTTLKSEPPPPGYMMQK 228 >gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays] Length = 281 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 ++ + E + FS+ + VNE++S YP + QS +IPLL AQ+Q G WV A Sbjct: 58 LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 117 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A I+++A IRV E+ATFYT F + VG + H+ VCGTTPCM+RG ++ E Sbjct: 118 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 176 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169 + K SDG S E+EC G CVNAPM+ + + YEDLTP+R+ EI+ Sbjct: 177 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 236 Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208 + G+ T G Q +R + PAGG T+L Sbjct: 237 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 274 >gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2] gi|75536607|sp|Q4UM09|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2] Length = 167 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ ++I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Y Sbjct: 3 TNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFY+ F L VG + H+QVC TTPC L G + ++++C K+ K D Sbjct: 63 MRAYEVATFYSMFNLKRVG-KYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQK 121 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++E++ID +S Sbjct: 122 FTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYS 162 >gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster] gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster] gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster] gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct] Length = 238 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 3/192 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F FS+++ V +++ YP + + A++PLL AQ Q+GW+S +A++ VA + + + Sbjct: 33 KFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPME 92 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 E A FYT F + P G + V VC +TPC LRG +++ E C+ ++ + D + Sbjct: 93 AFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFT 151 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 +E C GACVNAP++ + D YEDL + L I+ + GP+ R +S P Sbjct: 152 LKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPRNGRFASEPK 209 Query: 195 GGLTSLLDNNSK 206 GGLT+L Sbjct: 210 GGLTTLKIQPPP 221 >gi|190570998|ref|YP_001975356.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra cautella] Length = 166 Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 FSF+ ++ + I YP R SAV+PLL QEQ GWV +A+ VA++L + +I Sbjct: 6 EQFSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHI 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + +EVEC GACVNAP+V I D YE+LTPE++E II S+ Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIIAELSS 165 >gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura] gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura] Length = 245 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 7/214 (3%) Query: 2 SVRR----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 S+RR A + F F++E+ V +++ YP + Q A++PLL AQ Q GW+ Sbjct: 26 SMRRRSKLDACNMYDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLP 85 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 +A+ VA +L + ++ E A +YT F + P G V VC +TPC LRG + L++ C Sbjct: 86 ISAVVAVAEVLKIDPMQAYETAKYYTMFHMKPRGM-YVVAVCTSTPCFLRGSDDLLKACS 144 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + +P + D S + C GACVN P+V I D YEDLT LE I+ G+ Sbjct: 145 KMLRLEPGETSKDMQFSLKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGK- 203 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 GP R SS P G T+LL + K Sbjct: 204 -VPPAGPYSGRCSSEPKDGATTLLIDPPPAGYKM 236 >gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 166 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 1/160 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +I Sbjct: 6 EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 164 >gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase, E subunit [Magnetococcus sp. MC-1] gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus sp. MC-1] Length = 170 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67 E + +FS+E+ V + +RYP + QSA++P+L AQ + G W+SRA+++ VA + Sbjct: 3 EIAPAAKPAFSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAEL 62 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 + +A IRV E+ATFYT + L PVG + HVQVC C L G + + E + ++ + Sbjct: 63 MGLAPIRVYEVATFYTMYNLKPVG-KHHVQVCTNISCWLCGSDGIGEAVKQRLEIEYGQT 121 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + EVEC GACVNAPM I D YE+LTPE +IID + Sbjct: 122 TEDGNFTLSEVECLGACVNAPMFQINDDYYENLTPETAVKIIDELA 167 >gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of Ixodes scapularis] gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of Ixodes scapularis] Length = 164 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 104/162 (64%), Gaps = 2/162 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71 ++F F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L+M Sbjct: 2 NTNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEMP 61 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 Y+R E+ATFYT F L PVG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 62 YMRAYEVATFYTMFNLKPVG-KYHIQVCTTTPCWLRGSDHIMKICEKKLGVKLKETTEDQ 120 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP++ I D YEDLT E++E IID Sbjct: 121 KFTLSEIECLGACVNAPVIQINDDYYEDLTQEKMETIIDKLQ 162 >gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi] gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi] Length = 166 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 1/160 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 FSF+ E+ + I YP R SAV+PLL QEQ GWVS +A+ VA++L + +I Sbjct: 6 EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ D Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EVEC GAC+NAP+V I D YE+LTPE++E II S Sbjct: 125 TLKEVECLGACINAPVVQINNDFYENLTPEKVENIIAELS 164 >gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 166 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 FSF+ E+ + I YP + SAV+PLL QEQ GWV A+ VA++L + +I Sbjct: 6 EQFSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHI 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E+A FYT + L PVG + ++VC TTPC L E+++ + K+ D Sbjct: 66 RVYEVANFYTMYNLKPVG-KYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLF 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 125 TLKEVECFGACVNAPVVQINNDFYENLTPEKVESIIAELS 164 >gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer DSM 15868] gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer DSM 15868] gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer RA-YM] gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella anatipestifer RA-GD] Length = 170 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 2/160 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75 +F E+ V+++I+RYP + +SA+IP+L AQ++ G W+S ++ VA +L++ I V Sbjct: 7 AFKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILPIEV 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFYT F + PVG + ++VC T PCML G + +++ R ++ K DG + Sbjct: 67 YEVATFYTMFNMKPVG-KYVLEVCRTGPCMLNGSDDILDHIRKTLNIKDGETTEDGLFTL 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 + EC GAC APM+ +GK +E LT E+++EI++ G Sbjct: 126 KPAECLGACGYAPMMQLGKFYHEHLTKEKVDEILELCRQG 165 >gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7] gi|20139044|sp|Q92ID9|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7] Length = 167 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 74/161 (45%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT +++ +IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKLQ 165 >gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa] gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str. Iowa] Length = 167 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC L G + ++++C K+ K D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++ EIID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQ 165 >gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299] gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299] Length = 249 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 18/222 (8%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62 R + S+ F E + V++++ RYPP+ +SA+IPLL AQ+ +G++S A+ Sbjct: 7 HRDTPDNNDSLSWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMN 66 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA +L++A IRV E+ATFY+ F + VG + HV VCGTTPCMLRG + + + + Sbjct: 67 RVAEMLEVAPIRVYEVATFYSMFNRTKVG-KYHVMVCGTTPCMLRGSRDIEKALSDYMGV 125 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172 K DG + E+EC G CVNAPM+ + + YEDLTP ++ A Sbjct: 126 KKFESTPDGVFTLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADAVAVVKAL 185 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 GQ R G Q R + P GG T+L RG +D Sbjct: 186 KAGQ--KPRVGSQ-HRDKAEPMGGQTTLTGEP---RGPYCRD 221 >gi|190891290|ref|YP_001977832.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652] gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli CIAT 652] Length = 339 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 126/171 (73%), Positives = 142/171 (83%) Query: 48 RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107 RAQEQ+GWV+RAAIE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLR Sbjct: 2 RAQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLR 61 Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 G E L+ VC++KIH P RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEE Sbjct: 62 GSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEE 121 Query: 168 IIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 IID F+ G G +I+PG QIDRI SAP GG TSL + K R + KK D S Sbjct: 122 IIDTFAAGNGASIKPGTQIDRIFSAPEGGPTSLTTDEPKARTRAKKADAES 172 >gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5] gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5] Length = 167 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + +++VC K+ + D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++ IID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGGIIDKLQ 165 >gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] Length = 161 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 FSEE V E+I+RYP + +SA+IP+L AQE G W+S ++ VA++L + I V Sbjct: 2 FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F L PVG R +VC T PCMLRG + +I+ + K+ DG + + Sbjct: 62 EVATFYSMFNLQPVG-RYVFEVCQTGPCMLRGSDNIIDYIKKKLDIGVGQTTKDGLFTLK 120 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 VEC GAC APM+ +GK E LTPE+++ II+ + Sbjct: 121 TVECLGACGYAPMMQLGKHYREHLTPEKVDAIIEECRS 158 >gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis] gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis] Length = 246 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 3/200 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A ++ F F EE+ +IS YP + A++PLL AQ Q GW+ AI+ VA Sbjct: 34 DACNLYEKLKFEFDEENKKRAEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVA 93 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V E+A FYT F L P+G ++VC TTPC LRGC+++ C N + K Sbjct: 94 EMLKLEPFVVWEVANFYTMFNLRPIGM-FRLKVCMTTPCRLRGCDEIWRTCENVLKLKDG 152 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + D + C GACVN P++ + D YEDL E+++ +G GP+ Sbjct: 153 ETSKDMQFTLTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSG--IMPPAGPR 210 Query: 186 IDRISSAPAGGLTSLLDNNS 205 DR +S P GLTSLL Sbjct: 211 RDRFASEPRSGLTSLLTEPP 230 >gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246] gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246] Length = 167 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ + D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++ EIID Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQ 165 >gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic] gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic] Length = 167 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 ++F+F +++ E+I +YPP +SA++PLL AQ Q G W+ AIE VAN+L M Y Sbjct: 6 TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 IR E+ATFYT F L VG + H+QVC TTPC LRG + ++++C K+ D Sbjct: 66 IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKETTEDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E+EC GACVNAP+V I D YEDLT E++ +IID F Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGKIIDKFQ 165 >gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM 18053] gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM 18053] Length = 165 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 1/163 (0%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P+ +F+ E V E+I+RYP R +SA++P+L AQEQ GW+S ++ VA IL++ Sbjct: 4 SPNLVAFTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIE 63 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + V E+ATFYT + L PVG + ++ C T PC L G E + + K+ + +DG Sbjct: 64 PVEVYEVATFYTMYHLDPVG-KHVIEYCRTGPCCLMGGEDVYGHLKKKLGIEAGETTADG 122 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + +EVEC AC P+ I + Y +LT E++++II+ S Sbjct: 123 KFTLKEVECLAACGWGPVFQIREQFYMNLTNEKVDQIIEDLSK 165 >gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 217 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 111/214 (51%), Gaps = 15/214 (7%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62 R E+ +SF E + V+E+++RYP + +SA+IPLL AQ Q G +S + + Sbjct: 1 HRDTPEDNASLPWSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMN 60 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 VA I ++A IRV E+ATFY+ F +G + HV VCGTTPCMLRG + + Sbjct: 61 HVAEICEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGARDIERALSEYMGV 119 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172 + DG + E+EC G CVNAPM+ + + YEDLTP+ + + Sbjct: 120 EKFETTKDGMFTLGEMECMGCCVNAPMIAVADYRAGVEGYSYNYYEDLTPQSAVRVCEEL 179 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 G+ + R G Q R + P G T+LL+ Sbjct: 180 KAGK--SPRVGSQT-RDKAEPLPGQTTLLEPPPG 210 >gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas] gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str. Arkansas] Length = 181 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS + E +F F++++ N+ IS+YP R SAV+ LL AQ+Q G ++ + Sbjct: 1 MSNIQKNSNEHYTETFKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPLS 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ +A+ L M I V E+A FY+ + LSP G + +QVC TTPC L G + +++ C+ Sbjct: 61 AMNYIADFLGMRLIHVYEVAKFYSMYNLSPTG-KYLIQVCRTTPCWLCGSDDILKSCKEL 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ SD + +EVEC GACVNAP++ I D YE LTP+++++I+ Sbjct: 120 LNICVGETTSDNLFTLKEVECLGACVNAPVMQINDDYYEKLTPDKVKDIL 169 >gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC 35910] gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC 35910] Length = 169 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 103/164 (62%), Gaps = 2/164 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + +F ES V+++I+RYP R +SA++P+L AQ++ G W+ ++ VA +L + Sbjct: 3 ETIAFKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKP 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFYT F + PVG + ++VC T PCM+ G EK+++ R K++ K DG Sbjct: 63 IEVYEVATFYTMFNMKPVG-KYVLEVCRTGPCMVCGSEKILDHIRTKLNIKDGETTEDGM 121 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + + EC GAC APM+ +GK +E+LT E+++EI+D GQ Sbjct: 122 FTLKPAECLGACGYAPMMQLGKFFHENLTIEKVDEILDLCRQGQ 165 >gi|292493664|ref|YP_003529103.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] gi|291582259|gb|ADE16716.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] Length = 176 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S E ++ I++YP + QSAVIP L Q G +++ ++ VA L M I V E Sbjct: 22 SAEVRQQIDHWIAKYPQEQKQSAVIPALHIVQAANGGYLTNELLDEVAEYLQMPPISVYE 81 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+ F+L PVG R + VC C L G ++++ R ++ D + +E Sbjct: 82 VATFYSMFELKPVG-RHKLSVCTNISCQLCGSDQVVAHLRKRLGIGFGETTPDRRFTIKE 140 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 VEC GAC APM+M+G+ +E+LTPE++++I++A Sbjct: 141 VECLGACGGAPMMMVGQTYHENLTPEKIDQILEALK 176 >gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel] gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel] Length = 167 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 +SF F +++ +++ +YPP +SA++PLL AQ Q G W+S AIE VAN+L +AY Sbjct: 6 TSFIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAY 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +R E+ATFYT F L P+G + H++VC TTPC LRG +I+ C K+ K D Sbjct: 66 MRAYEVATFYTMFNLKPIG-KHHIKVCTTTPCWLRGSSDIIKTCEQKLGIKEQEVTKDQK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S E+EC GACVNAP+V I D YEDLT E++E I+D Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTQEKMENILDKLQ 165 >gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp. IMCC9063] gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp. IMCC9063] Length = 199 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 89/204 (43%), Positives = 126/204 (61%), Gaps = 6/204 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59 MS + +A++ QP SF FS E+ + ++ +YP R +SAV+PLL AQ+Q GW+S A Sbjct: 1 MSGKHVAKD--QPKSFIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLA 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A++ +A++L++ YI+V E+ATFYT + L+PVG + VQVC TTPC +RG K++E C+ Sbjct: 59 AVQYIADLLEVPYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCAIRGSGKIVEACKKY 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 I H + D SW EVEC GACVNAPM+ I +D YEDL E+I +F + Sbjct: 118 ISSNEGHLSEDKKSSWIEVECLGACVNAPMIQINEDYYEDLDAISAEKIFKSFKD--DNL 175 Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203 + G Q R S P +LL N Sbjct: 176 PKLGSQKGRKGSEPIKQRLTLLKN 199 >gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington] gi|81390153|sp|Q68X20|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str. Wilmington] Length = 170 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 +F+F +++ +I +YPP+ +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+ Sbjct: 9 TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYM 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R E+ATFY+ F LSPVG + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 69 RAYEVATFYSMFNLSPVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQKF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDL ++E++I+ + Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166 >gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri] gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri] Length = 265 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 18/223 (8%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61 V R E+ +++F V+ ++ RYP + +SA+IPLL AQ+Q G ++ A + Sbjct: 26 VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A++L++A IRV E+ATFY+ F +G + HV VCGTTPCMLRG ++ + + Sbjct: 86 NHIADVLEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGSREIEKALEEWMG 144 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171 K + GT + E+EC G CVNAPM+ + + YEDLTP+ ++ +A Sbjct: 145 VKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEA 204 Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 G+ + R G QI R + P GLT+L + S G +D Sbjct: 205 LKAGK--SPRVGSQI-RDKAEPIKGLTTLTGDPS---GPFSRD 241 >gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis DSM 1100] gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis DSM 1100] Length = 169 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 + ++ +FS E V ++ RYP + +SA++P+L AQ+ GW+S ++ VA +LD+ Sbjct: 2 IETTNITFSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDI 61 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 +I V E+ATFYT F L PVG + ++VC T PCML G + +++ K+ + D Sbjct: 62 QHIEVYEVATFYTMFHLKPVG-KNVLEVCRTGPCMLVGSDNIVKYLEQKLSIQDGETTPD 120 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G + + VEC GAC PM+ +G+ +E L+ ER++++++ F Sbjct: 121 GLFTIKTVECLGACGYGPMMQVGEKYHEFLSEERIDQLLEGFR 163 >gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5] gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5] gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] Length = 203 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 108/200 (54%), Gaps = 15/200 (7%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ------EGWVSRAAIEVVANIL 68 +FSF E S + +I++YP R SAV+PLL AQ Q WV R A++V+A L Sbjct: 8 AFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMDVIAARL 67 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 M +RV E+ATFYT F PVG + H+QVC TTPC LRG ++++ CR Sbjct: 68 SMPPMRVYEVATFYTMFHTKPVG-KFHLQVCTTTPCWLRGSDEVMSACRKAAEAD-GET- 124 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 S EEVEC G CVNAP+V + D YEDL R E +++ G D G I R Sbjct: 125 ----FSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRAG--DVPPAGSTIGR 178 Query: 189 ISSAPAGGLTSLLDNNSKKR 208 +SAP GG T+L K Sbjct: 179 QASAPEGGPTTLFGVGGTKP 198 >gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Oncorhynchus mykiss] Length = 205 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 43/215 (20%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R + + F F+ ++ Sbjct: 33 IFVHRDTPDNNPDTPFEFTVDNLK------------------------------------ 56 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 VA +L++ +R+ E+ATFYT F PVG + H+Q+C TTPCML + ++E +NK+ Sbjct: 57 ---VAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKL 112 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K +D S EVEC GACVNAPMV I + YEDL+P+ +++IID GQ Sbjct: 113 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VP 170 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 PGP+ R S PAGGLTSL + G + D Sbjct: 171 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 204 >gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium 3519-10] gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium 3519-10] Length = 169 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 2/163 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72 + +F E+ V ++I RYP + +SA+IP+L AQ++ G W+ ++ VA++L + Sbjct: 3 ETIAFQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKP 62 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFYT F + PVG + ++VC T PCML G + +++ R ++ K +DG Sbjct: 63 IEVYEVATFYTMFNMKPVG-KYVLEVCQTGPCMLSGSDGILQHIRETLNIKNGETTADGL 121 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 + ++ EC GAC APM+ +GK +E LT E+++EI+ G Sbjct: 122 FTLKQAECLGACGYAPMMQLGKFYHEHLTNEKVDEILQLCRQG 164 >gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E] gi|6647681|sp|Q9ZDH5|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii] gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii Rp22] Length = 177 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 2/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 +F+F +++ +I +YPP +SA++PLL AQ Q G W+ +AIE VAN+L+M Y+ Sbjct: 9 TFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYM 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R E+ATFYT F L+P+G + H+QVC TTPC LRG + ++++C K+ K D Sbjct: 69 RAYEVATFYTMFNLNPIG-KYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQKF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E+EC GACVNAP+V I D YEDL ++E++I+ + Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166 >gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus] gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus] Length = 152 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 1 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDLTP+ +EEIID G+ Sbjct: 60 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 117 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R PAGGLTSL + K G + Sbjct: 118 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 151 >gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 269 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 15/226 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+ Sbjct: 40 HLNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 + SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++ Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 +G+ + GPQ DR + PAGG TSLL + D+K+ Sbjct: 219 RSGK--PFKIGPQRPDRKYAEPAGGRTSLLFKEPPGPYCRDLDEKV 262 >gi|154335106|ref|XP_001563793.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania braziliensis MHOM/BR/75/M2904] Length = 274 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 15/225 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + F+ S ++ E++ ++P R SA IPLL AQ+Q+G ++ A+ Sbjct: 40 HHNTDYDNTRIPWDFTTASYEKIHHEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAM 99 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++LIE + ++ Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELIERTMHYLN 158 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 + SDG ++ E+EC GACVNAPM+++ D EDLT + ++ +++ Sbjct: 159 VRMHGTTSDGLITVGEMECLGACVNAPMLVVSDYSNPPNFSYDYVEDLTWDSIKTLVEDL 218 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 G+ + GPQ DR + PAGG TSLL + D K Sbjct: 219 RGGK--PFKIGPQRPDRRCAEPAGGRTSLLFKEPPGPYCRDFDAK 261 >gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922] gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922] Length = 163 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 2/159 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75 FSE + +N++++RYP + +SA+IP+L AQE+ G W+ ++ VA +LD+ + V Sbjct: 4 QFSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLPVEV 63 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A+FYT FQL+PVG + +QVC T PCM++G + +I+ +NK++ DG + Sbjct: 64 YEVASFYTMFQLNPVG-KYVLQVCQTGPCMIKGADHIIQHIKNKLNIDIGGTTEDGLFTL 122 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + VEC GAC APM+ +GK E LT E+++E+I+ Sbjct: 123 QTVECLGACGYAPMMQLGKTYREFLTTEKVDELIEELKK 161 >gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae D-4968] gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150] gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae D-4968] gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150] Length = 167 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 1/155 (0%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ G+++ ++ +A+ LDM I V E+ Sbjct: 14 SAERIKEIDHWIAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEV 73 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 A+FYT ++ VG R + VC CML +++ K+ K DG + V Sbjct: 74 ASFYTMYEHKQVG-RHLINVCTNISCMLCDSAAVVKHLEKKLDIKLGETTDDGRFTLRAV 132 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EC GACVNAPM+ + KD +E LTPE ++++++ + Sbjct: 133 ECLGACVNAPMMQVNKDYHEKLTPESIDKVLEQYQ 167 >gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX] gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca YX] Length = 239 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 26/214 (12%) Query: 7 AEEEFQPSSFSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 + P FS E+ + E+ISRYP +R SA++PLL Q +EG+VS I Sbjct: 3 TPPKPNPI---FSGENRARLELDAKEIISRYPKAR--SALLPLLHLVQSEEGYVSNDGIA 57 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A L + V +ATFYT ++ PVG HV VC C + G +++ + + Sbjct: 58 FCAEQLGLTTAEVTAVATFYTMYKRRPVGE-YHVGVCTNPLCAVMGGDEIYSALKEHLGV 116 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + DG +S E VEC AC AP+VMI + +++ TPE +++I+D G+ Sbjct: 117 ENDGVTEDGKISLEHVECNAACDFAPVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTR 176 Query: 183 GPQI----------------DRISSAPAGGLTSL 200 GP R + P G SL Sbjct: 177 GPNRLCTWKQASRVLAGFDDGRATEGPQAGEPSL 210 >gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake] gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake] Length = 180 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 2/180 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS + F FS+E+ + I++YP R SAV+ LL AQ+Q G ++ + Sbjct: 1 MSSTQKNSNTNYIGEFKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSS 60 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A+ L M I V E+A FY+ + LS G + VQVC TTPC L G + +++ C+ Sbjct: 61 AINYIADFLGMQLIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDDVLKSCKEL 119 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 ++ SD + +EVEC GACVNAP+V I D YE LTP+++++I+ + T Sbjct: 120 LNIGIGETTSDNLFTLKEVECLGACVNAPVVQINDDYYEKLTPDKMKDILLEIQKKENLT 179 >gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132] gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132] Length = 161 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 1/161 (0%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + +F+E++ E+I+RYP R +SA++PLL AQEQ GWVS A ++ +A IL + + Sbjct: 2 ENIAFTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPV 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFYT F L PVG + ++ C T PC G E++ + + ++ SDG Sbjct: 62 EVYEVATFYTMFHLEPVG-KHVIEYCRTGPCCTVGGEEVYDHLKERLGIASNQTTSDGLF 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + +EVEC AC P I + + L ++++IID S Sbjct: 121 TLKEVECLAACGWGPCFQIKEKFFMQLDKAKVDQIIDELSK 161 >gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum S5] gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum S5] Length = 161 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 F+F+EE+ E++ RYP +S +P L AQ QEGWVS+ A+E +A L++ Sbjct: 4 DKPFAFNEETERQFQELLKRYPI--KKSLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPV 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFYT + L PVG + H+Q+C T C LRG E+++ KI P H +DG Sbjct: 62 TDVYEVATFYTMYNLHPVG-KYHIQLCRTLSCDLRGKEEILRHIVGKIGITPGHTTADGR 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S +VEC G+C + PM+ + D +E+LTP+R+++I+D Sbjct: 121 FSLVQVECLGSCGSGPMMQLNDDYHENLTPQRVDQILDQL 160 >gi|296268277|ref|YP_003650909.1| NADH-quinone oxidoreductase subunit E [Thermobispora bispora DSM 43833] gi|296091064|gb|ADG87016.1| NADH-quinone oxidoreductase, E subunit [Thermobispora bispora DSM 43833] Length = 231 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 19/197 (9%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E E+I+RYP R SA++PLL Q ++G++S E A L + VL +A Sbjct: 9 ERLEREAKEIIARYPKPR--SALLPLLHLVQSEDGYISDDGAEFCAEQLGLTKAEVLGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFYT ++ P G +V VC T C + G +++ E + DG ++ E +E Sbjct: 67 TFYTMYKREPAGE-YNVGVCINTLCAVMGGDQIWETLTEHLGIGHNETTPDGKITLERLE 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------- 186 C AC AP+V++ + +++ TPE + ++D G+G T GP+ Sbjct: 126 CNAACDYAPVVVVNWEFFDNQTPESAKRLVDDLRAGKGATPTRGPKRLCTFKEASRILAG 185 Query: 187 ---DRISSAPAGGLTSL 200 R P+ G SL Sbjct: 186 FPDGRAGEGPSAGEASL 202 >gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium spiritivorum ATCC 33861] gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium spiritivorum ATCC 33861] Length = 171 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA Sbjct: 2 LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + LD+ I V E+ATFYT + L P G + ++VC T PC L G EK++ N++ K Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMTHIENRLGVKEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 DG SW VEC AC P++ IG D YE+LT E ++++I+ Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPDYTFYENLTEESVDKLINELKE 169 >gi|254496125|ref|ZP_05109024.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12] gi|254354666|gb|EET13302.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12] Length = 167 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 1/155 (0%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S + ++ I++YP + QSAV+ L QE+ ++ ++ +A+ L+M I V E+ Sbjct: 14 SAQRMQDIDHWIAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEV 73 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 A+FYT ++ PVGT V VC CMLR +++ + K+ K DG + V Sbjct: 74 ASFYTMYEHKPVGT-HLVNVCTNISCMLRDSAGVVDHLQKKLGIKLGETTDDGRFTLRSV 132 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EC GACVNAPM+ + KD +E+LTPE ++++++ + Sbjct: 133 ECLGACVNAPMMQVDKDYHENLTPESIDKVLEQYQ 167 >gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium spiritivorum ATCC 33300] gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium spiritivorum ATCC 33300] Length = 171 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ +E QP FS E EV+SRYP + +SA++P+L Q + GW+S A++ VA Sbjct: 2 LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + LD+ I V E+ATFYT + L P G + ++VC T PC L G EK+++ N++ K Sbjct: 60 HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMDHIENRLGVKEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 DG SW VEC AC P++ IG + YE+LT E ++++I+ Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPEYTFYENLTVESVDQLINELKE 169 >gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel] gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Gardel] Length = 183 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 ++++ + F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA Sbjct: 4 NIQKNCNTRYDTGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A+ LDM I V E+A FY+ + LS G + VQVC TTPC L G + +++ C+ + Sbjct: 64 MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDNVLKACKEFL 122 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + + D + +EVEC GACVNAP+V I D YE L ++++ I+ + + Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILMEYKKKE 178 >gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei TREU927] gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei] gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma brucei gambiense DAL972] Length = 273 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 13/224 (5%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNE-VISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + F+ S +N ++ ++P SR +SA+IPLL AQ Q+G ++ A+ Sbjct: 38 HHNTDTNNTRIPWDFTMASYEEINNVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAM 97 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++ Sbjct: 98 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 156 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 K DG ++ E++C GACVNAPM+++ D EDLT + ++E+I+ Sbjct: 157 VKMHGTTRDGLITLGEMQCLGACVNAPMLVVSDYSRPPHFSYDFVEDLTWDSVKELIENL 216 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 G+ + + DR S PAGG TS+ K + D K Sbjct: 217 REGRPFKVGTC-REDRRWSEPAGGRTSIFMKEPPKPYCRDLDAK 259 >gi|322498104|emb|CBZ33179.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 273 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+ Sbjct: 40 HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 + SDG ++ E+EC GACVNAPM+++ D EDLT E ++ ++++ Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVESL 218 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 G+ + G Q DR + PAGG TSLL + D + Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261 >gi|146083233|ref|XP_001464685.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum JPCM5] Length = 273 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 15/225 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+ Sbjct: 40 HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 + SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++ Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 G+ + G Q DR + PAGG TSLL + D + Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261 >gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga thiooxidans DMS010] gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga thiooxydans DMS010] Length = 170 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMA 71 P F+E ++ I++YP + QSAVIP L Q EGW++ A ++ +A+ L + Sbjct: 9 PKEGLFTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIP 68 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 I V E+ATFYT F+LSPVG + + VC CML G EK+++ K++ KP DG Sbjct: 69 AISVYEVATFYTMFELSPVG-KHKISVCTNISCMLCGSEKVMQHIEQKLNIKPGQTTEDG 127 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + +EVEC GACV APM+++ K +E LT +++++I+D ++ Sbjct: 128 LFTLKEVECLGACVGAPMMLVDKQYHEFLTEDKIDDILDRLNS 170 >gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Welgevonden] gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Welgevonden] gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Welgevonden] gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str. Welgevonden] Length = 183 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60 ++++ + F F++ES N+ ++RYP R SAV+PLL AQ+Q G + AA Sbjct: 4 NIQKNCNTRYDIGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A+ LDM I V E+A FY+ + LS G + VQVC TTPC L G E +++ C+ + Sbjct: 64 MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSENVLKACKEFL 122 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + + D + +EVEC GACVNAP+V I D YE L ++++ I+ + + Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILIEYKKKE 178 >gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b] Length = 167 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167 >gi|157867454|ref|XP_001682281.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major strain Friedlin] gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania major strain Friedlin] Length = 273 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + + F+ S + NE++ ++P R SA IPLL AQ+Q+G ++ A+ Sbjct: 40 HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ + V E TFY+ F PVG + H+Q C TTPCML G ++L+E + ++ Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 + SDG ++ E+EC GACVNAPM+++ D EDLT E ++ +++ Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 G+ + G Q +DR + PAGG TSLL + D + Sbjct: 219 RGGK--PFKIGSQRLDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261 >gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby] gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy] gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby] gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy] Length = 167 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167 >gi|115618122|ref|XP_797683.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] gi|115950060|ref|XP_001178877.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 2 [Strongylocentrotus purpuratus] Length = 152 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL M +RV E+ATFYT F +PVG + H+Q+C TTPCMLR + ++EV K+ Sbjct: 1 MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 K D + EVEC GACVNAPMV I + YEDL + +EEIID G+ T Sbjct: 60 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 117 Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGP+ R +S P GGLTSL+D G +DD Sbjct: 118 KPGPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 151 >gi|312890392|ref|ZP_07749929.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603] gi|311297162|gb|EFQ74294.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603] Length = 174 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 4/171 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L E+ Q +S FSE+ N+V+SRYP + +S ++P+L Q + GWVS A++ VA Sbjct: 2 LRVEDTQ-TSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVA 60 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L + +I V E+A+FY+ + L P G + ++VC T PC L G EK+++ K+ K Sbjct: 61 EYLGIQHIEVYEVASFYSMYLLRPQG-KYLLEVCRTGPCCLVGAEKIMDYIEQKLGVKEG 119 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 DG SW VEC AC AP++ IG + YE+LTPE++++++ + Sbjct: 120 EVTPDGLFSWRGVECLAACGFAPVLQIGPEYTFYENLTPEKVDKLVADLTA 170 >gi|297563971|ref|YP_003682944.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848420|gb|ADH70438.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 +F+ E + E+I RYP R +SA++PLL Q +EG VS+A + A+ L + Sbjct: 18 AFTAEVTARLEPEAKEIIGRYP--RPRSALLPLLHLVQAEEGHVSKAGMRFCADQLGITL 75 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT ++ P G V VC T C + G +++ + ++ + DG Sbjct: 76 AEVNAVATFYTMYRRRPGGD-YQVGVCTNTLCAVMGGDEIFQTLKDHLGVGNNETTEDGK 134 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 ++ E VEC AC AP+VM+ + +++ TP+ + ++D G+ GP Sbjct: 135 VTLEHVECNAACDFAPVVMVNWEFFDNQTPDTAKRLVDDLRLGRDVAPTRGPAS 188 >gi|153872952|ref|ZP_02001700.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS] gi|152070587|gb|EDN68305.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS] Length = 171 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 6/173 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 MS R +S SEES ++ I++YP + QS V+ L Q+ G W++ Sbjct: 1 MSTR----MSKPNASTLLSEESRAAIDRWIAKYPSDQKQSTVMAALSIVQDANGGWLTTE 56 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 ++ VA+ LDM I V E+ATFY+ ++L PVG + +C CMLRG E ++ K Sbjct: 57 LMDAVADYLDMQPIAVYEVATFYSMYELKPVGQ-NKLCICTNVSCMLRGSEDIVAHLEQK 115 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + K D + +EVEC GAC APM+ +G++ +E+LT E++++I+ Sbjct: 116 LGIKLGETTPDKKFTLKEVECLGACGGAPMMQVGREYHENLTSEKVDDILTKL 168 >gi|52842983|ref|YP_096782.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 167 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 21 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 81 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 NAPM+ + KD +E+LT E ++++++ + Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167 >gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 331] gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 331] Length = 174 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L Sbjct: 2 NEQTEQFILDEAVIKEIDRWLAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 SDG + + VEC AC APM I + +E+LTPE++ IID Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167 >gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway 5J108-111] gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 334] gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212] gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154] gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway 5J108-111] gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 334] gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212] gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154] Length = 174 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L Sbjct: 2 NEQTEQFILDEAVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 SDG + + VEC AC APM I + +E+LTPE++ IID Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167 >gi|322828601|gb|EFZ32337.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 257 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ Sbjct: 24 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 83 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++ Sbjct: 84 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 142 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+ Sbjct: 143 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 202 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211 G+ + G Q DR + PAGG TS+ + Sbjct: 203 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 240 >gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 261 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ Sbjct: 28 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L+ ++ Sbjct: 88 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 146 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+ Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211 G+ + G Q DR + PAGG TS+ + Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 244 >gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi strain CL Brener] gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative [Trypanosoma cruzi] Length = 261 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 15/220 (6%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61 + + + FS S +N ++ ++P SR +SAVIPLL AQ Q+G ++ A+ Sbjct: 28 HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A I ++ ++V E TFY+ F PVG + H+Q C TTPCML GC++L++ ++ Sbjct: 88 YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVQRTEAYLN 146 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172 K DG ++ E+EC GACVNAPM+++ D EDLT + ++++I+ Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206 Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211 G+ + G Q DR + PAGG TS+ + Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 244 >gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155] gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str. MC2 155] Length = 245 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E ++I+RYP +R SA++PLL Q Q+G+++ A I A L + V + Sbjct: 30 TESLRADAEQIIARYPDAR--SALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAV 87 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY+ ++ +P G V VC T C + G + ++E + + P DG ++ E V Sbjct: 88 ATFYSMYRRTPTGD-YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTLEHV 146 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RISSAPAGGL 197 EC AC AP+VM+ + Y++ TP +++D +G G R ++ GL Sbjct: 147 ECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPPTRGSLCTFRETARTLAGL 206 Query: 198 T 198 T Sbjct: 207 T 207 >gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3] gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3] Length = 262 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A++L + V Sbjct: 1 MAFSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C L G E + E + DG+++ Sbjct: 61 GAVATFYTMYKRHPVGD-YLVSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPDGSITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + Y+ + P+ + I++ G+ G Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGRRPAPTRG 167 >gi|269128609|ref|YP_003301979.1| NADH-quinone oxidoreductase subunit E [Thermomonospora curvata DSM 43183] gi|268313567|gb|ACY99941.1| NADH-quinone oxidoreductase, E subunit [Thermomonospora curvata DSM 43183] Length = 240 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 10/205 (4%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 ++S E+ + E+I+RYP R SA++PLL Q +G ++ IE A L + Sbjct: 1 MAYSPETRAQLERDAKEIIARYPKPR--SALLPLLHLVQSVDGHITSDGIEFCAEQLGIT 58 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +V +ATFYT ++ PVG HV VC T C + G +++ E + DG Sbjct: 59 PAQVTGVATFYTMYKHKPVGE-YHVGVCINTLCAVMGGDQIWEELSEYLGVGHDEATEDG 117 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 +S E +EC AC AP+VM+ + ++++TPE+ ++++D G+ GP + Sbjct: 118 KISLERLECNAACDYAPVVMVNWEFFDNMTPEKAKQLVDDLRAGKEVAPTRGP---KRLC 174 Query: 192 APAGGLTSLLDNNSKKRGKKKKDDK 216 L + G+ + + Sbjct: 175 TWKEASRVLAGFPDGRAGEGVQAGE 199 >gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens] gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens] Length = 155 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 9 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 69 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 NAPM+ + KD +E+LT E ++++++ + Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQYQ 155 >gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145] gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145] Length = 174 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L EE QP FS E +E++ RYP + +SA++P+L Q GW+S +A++ VA Sbjct: 2 LKVEETQPV--EFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L ++ I V E+ATFYT + L P G + ++VC T PC L G EKL+ K+ + Sbjct: 60 EYLKISPIEVYEVATFYTMYFLKPQG-KFTLEVCRTGPCCLVGAEKLLNYIGEKLGVEEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDT 179 DG S+ VEC AC P++ IG + YE+LT E ++++ID G + Sbjct: 119 EITPDGLFSYRGVECLAACGFGPVLQIGPEYTFYENLTIESVDKLIDDLKAKAGKS 174 >gi|77166019|ref|YP_344544.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus oceani ATCC 19707] gi|254436398|ref|ZP_05049904.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] gi|76884333|gb|ABA59014.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707] gi|207088088|gb|EDZ65361.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] Length = 175 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 1 MSV----RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-W 55 MSV RR + + S E ++ I++YPP R QSAVIP L Q G + Sbjct: 1 MSVGQPERR--KSRNREEENLLSSEVRQQIDYWIAKYPPERKQSAVIPALHIVQAVNGGY 58 Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 ++ ++ VA L+M I V E+ATFY+ ++L P+G R + VC C L G ++++ Sbjct: 59 LTDKLLDAVAEYLEMRPISVYEVATFYSMYELKPIG-RHKISVCTNISCQLSGSDEVVAH 117 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + ++ D + +E EC GAC APM+M G +E+LT E++++I++A Sbjct: 118 LQKRLGIGFGETTPDHRFTVKEAECLGACGGAPMMMAGHTYHENLTSEKIDQILEALK 175 >gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris] gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris] Length = 155 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ IS+YP + QSAV+ L QE+ G ++ + VA LDM I V E+A+FYT + Sbjct: 9 IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R + VC CMLR ++E K+ DG + VEC GACV Sbjct: 69 EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 NAPM+ + KD +E+LT E ++++++ + Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQYQ 155 >gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205] gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola CNS-205] Length = 305 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 1/171 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I A +L + +V Sbjct: 4 FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ P G V VC T C + G +++ + + +DGT++ E Sbjct: 64 VASFYTMYKRRPTGDW-LVSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTADGTITLEH 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 EC AC P++ + D ++++ P+ ++D G T G ++ R Sbjct: 123 AECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTPSRGARLCR 173 >gi|300113269|ref|YP_003759844.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii C-113] gi|299539206|gb|ADJ27523.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii C-113] Length = 174 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATF 81 +++ I++YPP + QSA+IP L Q G +++ ++ VA L+M I V E+ATF Sbjct: 24 RQQIDDWIAKYPPEQKQSAIIPALHIVQAANGGYLTDKLLDAVAEYLEMRPISVYEVATF 83 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ ++L P+G R + VC C LRG ++++ R ++ D + +E EC Sbjct: 84 YSMYELKPIG-RHKISVCTNISCQLRGSDEVVAHLRKRLGIGFGETTPDHRFTVKEAECL 142 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC APM+M G+ +E+LTP ++++I++A Sbjct: 143 GACGGAPMMMAGRTYHENLTPAKIDQILEALK 174 >gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21] gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21] Length = 170 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ + P ++ +E++ RYP R +SA++P+L Q + GW+S A++ VA Sbjct: 2 LSVKNNSPVEIK--DDLLAKFDEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L + I V E+ATFYT F L P G + ++VC T PC L G E++++ N++ K Sbjct: 60 AYLRIEPIEVYEVATFYTMFFLQPQG-KYVLEVCRTGPCCLVGAERIMKHIENRLGVKEN 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFS 173 DG SW +EC AC P++ IG YE+LT E ++++I+ Sbjct: 119 EVTPDGLFSWRGIECVAACGMGPVLQIGPTYTYYENLTEESVDQLIEELK 168 >gi|29654735|ref|NP_820427.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA 493] gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493] Length = 174 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68 Q F E ++ +++YP + +SAV+P L+ Q+Q GW+S+AA+ +A+ L Sbjct: 2 NEQTEQFILDEVVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + I V E+ATFY + L P+G + + +C PC LRG ++++ + ++ Sbjct: 62 QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 SDG + + VEC AC APM I + +E+LTPE++ IID Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167 >gi|222475163|ref|YP_002563579.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str. Florida] gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico] gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia] gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str. Florida] Length = 169 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 2/168 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANIL 68 + F F+ E+ + IS YP R SAV+PLL Q Q G++ ++AI +A++L Sbjct: 2 DQSSEKFEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 M + V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + Sbjct: 62 GMRPVHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDEST 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 D + EVEC GACVNAP+V I +D YEDL E++ EI+ + Sbjct: 121 KDNLFTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168 >gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi] Length = 169 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72 F F+ E+ + IS YP R SAV+PLL Q Q G++ ++AI +A++L M Sbjct: 6 EKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLLGMRP 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D Sbjct: 66 VHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNL 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EVEC GACVNAP+V I +D YEDL E++ EI+ + Sbjct: 125 FTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168 >gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries] gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel] gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries] gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel] Length = 169 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72 F F+ E+ + IS YP R SAV+PLL Q Q G++ ++AI +A++L M Sbjct: 6 EKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRP 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+ FY+ + +PVG + VQVC TTPC LRG ++ C+ + D Sbjct: 66 VHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNL 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EVEC GACVNAP+V I +D YEDL E++ EI+ + Sbjct: 125 FTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168 >gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC 49957] gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC 49957] Length = 218 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 11/218 (5%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54 MS E +P+SF+F ES + +++ RYP + S VIPLL AQ+Q G Sbjct: 1 MSAPHSHHHE-EPASFAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSA 59 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV R A++ +A L MA IRV E+ATFY F P+G R H+QVCGTTPC LRG ++++ Sbjct: 60 WVPRVAMDTIAERLGMAPIRVYEVATFYFMFNTRPIG-RFHLQVCGTTPCWLRGSDEVLR 118 Query: 115 VCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C+ H K + DG + EVEC G CVNAP++ + D YED+ E ++++A Sbjct: 119 ACKEHGHLKGYGDTSEDGLFTMTEVECLGGCVNAPILQVDDDYYEDMDYETTVQLLEALK 178 Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 G+ +PG R SAP GG ++LD K Sbjct: 179 RGE--RPKPGSMKGRQGSAPIGGPETVLDIPMDDAALK 214 >gi|326201388|ref|ZP_08191260.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens DSM 2782] gi|325988956|gb|EGD49780.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens DSM 2782] Length = 164 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++E+++ + ++I +Y +R A+IP+L QE G++ ++ ++ L+++ + + Sbjct: 11 TDENSLKLGKIIDKYKETR--GALIPVLHEVQEVYGYLPEDVLKEISEKLNVSLAEIYGV 68 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFYTQF L+P G R + +C T C ++G +++ + K+ DG S + Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGDILDKFKQKLGIDVGQCTEDGKFSLDAC 127 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++MI D + L P+ ++ I+ + Sbjct: 128 RCIGACGLAPVIMINDDVHGRLVPDDVDAILAKYK 162 >gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063] gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063] gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 233 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 1/159 (0%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+ISRYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++ Sbjct: 17 QEIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC Sbjct: 77 RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP++M+ + +++ TP+ +++D G GP Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPN 174 >gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec] gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec] Length = 273 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +E++ E+I+RYP R +SA++P+L Q ++G V+ +E A L + + V Sbjct: 1 MPLTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C+LRG E++ E + DGT++ Sbjct: 61 SAVATFYTMYKRRPVGDW-LVSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTEDGTITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + Y+ + P+ EEI++A G+ G Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGERPAPTRG 167 >gi|315654701|ref|ZP_07907607.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC 51333] gi|315491165|gb|EFU80784.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC 51333] Length = 233 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 1/159 (0%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+I+RYP +SA++PLL Q ++G+VS IE+ + +L ++ V +ATFYTQ++ Sbjct: 17 REIIARYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G +V VC T+ C + G +++ E + + +DG ++ E +EC AC Sbjct: 77 RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 AP++M+ + +++ TP+ +++D G GP Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPN 174 >gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S] gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S] Length = 688 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 23 AIWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 A +E+I+RY PP +SA++PLL Q ++G VS+A IE A L + V Sbjct: 33 AADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIEFCAAQLGLTAAEVT 92 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT ++ P GT HV VC + C + G + + R + DG ++ E Sbjct: 93 AVATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTPDGAITLE 151 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +EC AC AP++M+ + +++ TPE ++DA G+ T G Sbjct: 152 HIECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRG 198 >gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma japonicum] Length = 157 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG--CEKLIEVCRN 118 + VA IL++ +RV E+ATFYT F PVG + H+Q+C TTPCML G E ++ + Sbjct: 1 MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 59 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + +P D + EVEC GACVNAPM+ I D YEDLT E II G+ Sbjct: 60 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 117 Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 +PGPQ R +S P GGLTSL + K G K + D Sbjct: 118 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 156 >gi|146296865|ref|YP_001180636.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410441|gb|ABP67445.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 160 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGGTTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L PE +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLAPEDIENILSRY 160 >gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Streptosporangium roseum DSM 43021] gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +++ E + E+I RYP +R SA++PLL Q ++G+VS E A +L ++ Sbjct: 1 MTYTPEVRERLEQDAKEIIGRYPKTR--SALLPLLHLVQSEDGYVSDDGQEFCAEMLGLS 58 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V+ ++TFYT ++ P+G HV VC T C + G +++ + DG Sbjct: 59 KAEVVGVSTFYTMYKRKPMGD-YHVGVCINTLCAVMGGDQIWDELSEHAGVGHDETTPDG 117 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +S E +EC AC AP++M+ + +++ TP ++++D G+ + GP Sbjct: 118 KVSLERLECNAACDFAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGP 170 >gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440] gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica CNB-440] Length = 317 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 2/185 (1%) Query: 5 RLAEEEFQPSSFS-FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 A + + + FSEE+ E+I+RYP R +SA++PLL Q +EG+VS A I Sbjct: 2 SDAVANGKGAPMTVFSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAF 61 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 A +L + +V +A+FYT ++ P G V VC T C + G +++ + + Sbjct: 62 CAEVLGLNKAQVGAVASFYTMYKRRPTGDW-LVSVCTNTMCNVLGGQEVYDALVEHLGVG 120 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +DGT++ E EC AC P++ + D ++++ P+ ++D G T G Sbjct: 121 HEETTADGTVTLEHAECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRPTSSRG 180 Query: 184 PQIDR 188 ++ R Sbjct: 181 ARLCR 185 >gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis] Length = 149 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 1/142 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R ++ F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 9 LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 68 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+ L M +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E + V K+ Sbjct: 69 MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 127 Query: 121 HQKPLHRNSDGTLSWEEVECQG 142 P + DG + VEC G Sbjct: 128 GIGPGETSKDGLFTLSVVECLG 149 >gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 224 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 5/188 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++++RYP +SA++P+L Q ++G+VS I + A++L + V +ATFY Sbjct: 11 RAEAAQIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAVATFY 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 +Q++ P G +V VC + C + G +++ E + +DG ++ E +EC Sbjct: 71 SQYKRHPNGD-YNVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADGKITLERLECNA 129 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP----AGGLT 198 AC AP+VM+ + +++ TPE ++D G+ GP R AG Sbjct: 130 ACDYAPVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPNQIRTFKEISHLLAGFED 189 Query: 199 SLLDNNSK 206 L+D Sbjct: 190 GLVDEGPG 197 >gi|220929649|ref|YP_002506558.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum H10] gi|219999977|gb|ACL76578.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum H10] Length = 163 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++E+++ + ++I +Y +R A+IP+L QE G++S ++ ++ L+++ + + Sbjct: 11 TDENSLKLGKIIDKYKGTR--GALIPVLHEVQEVYGYLSEDVLKEISEKLNVSLAEIYGV 68 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFYTQF L+P G R + +C T C ++G +++E + K+ DG S + Sbjct: 69 VTFYTQFSLNPKG-RFKINICMGTACYVKGSGEILEKFKEKLGIDVGQCTEDGKFSLDAC 127 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++MI D + L P+ +E I++ + Sbjct: 128 RCIGACGLAPVIMINDDVHGRLLPDDVEAILEKYK 162 >gi|121534129|ref|ZP_01665954.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans Nor1] gi|121307232|gb|EAX48149.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans Nor1] Length = 166 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + ++E++++Y + A+IP+L AQ G++S+ IE +A LD+ ++ + TF Sbjct: 18 ALAQLDEILAKY--QGVKGALIPVLQEAQNAYGYLSKEVIEYIAEKLDIPVSQIYGVVTF 75 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L+P G R ++VC T C +RG + +++ + + +D + E V C Sbjct: 76 YAQFHLNPRG-RNIIRVCQGTACHVRGAKAILKALEDNLKITAGGTTADLKFTLETVACI 134 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++MI DT+ LTPE + I+ + Sbjct: 135 GACGLAPVMMINDDTHGRLTPEVIPSILAKY 165 >gi|312135111|ref|YP_004002449.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor owensensis OL] gi|311775162|gb|ADQ04649.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor owensensis OL] Length = 160 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160 >gi|312793477|ref|YP_004026400.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876008|ref|ZP_07735997.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797206|gb|EFR13546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor lactoaceticus 6A] gi|312180617|gb|ADQ40787.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 160 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E+I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILSRY 160 >gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707] Length = 688 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 23 AIWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 A +E+I+RY PP +SA++PLL Q ++G VS+A I+ A L + V Sbjct: 33 AADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIDFCAAQLGLTAAEVT 92 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT ++ P GT HV VC + C + G + + R + +DG ++ E Sbjct: 93 AVATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTADGAITLE 151 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +EC AC AP++M+ + +++ TPE ++DA G+ T G Sbjct: 152 HIECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRG 198 >gi|222529286|ref|YP_002573168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312622468|ref|YP_004024081.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor kronotskyensis 2002] gi|222456133|gb|ACM60395.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor bescii DSM 6725] gi|312202935|gb|ADQ46262.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 160 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +++I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVKDILSRY 160 >gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira defluvii] gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira defluvii] Length = 178 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E +++++SRYP R SA++PLL AQ ++G+++ AA++ +A +L + +V E Sbjct: 2 LKETHKAEIDDILSRYPVKR--SALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 ATFYT L PVG + H+QVC + C L G + +I K+ KP D + Sbjct: 60 TATFYTMLNLKPVG-KFHLQVCKSLMCALVGSDTVIGWISAKLGIKPGETTPDRLFTLSI 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 VEC AC PM+ + D YE LT E+L+ I+ +++ GP Sbjct: 119 VECLAACGTGPMMQVNDDYYERLTEEKLDRILADLRQTGTCSLKTGP 165 >gi|309389877|gb|ADO77757.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium praevalens DSM 2228] Length = 160 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 7/161 (4%) Query: 17 SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 +EE V E+++RY + + +IP+L AQE+ G++ ++ +A L+++ Sbjct: 3 EMTEEKLAEFLKPVAEILARY--GKKERYLIPVLQEAQEEYGYLPEEVLKEIAIGLNLSL 60 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + TFY+QF P G ++VC T C +RG E+++ ++++ + D Sbjct: 61 SQVYGVVTFYSQFHQEPRGN-NIIRVCMGTACHVRGGEEILNAIKDELKIEAGQTTEDLE 119 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E V C GAC AP++MI DT+ LTPE + EII + Sbjct: 120 FTLESVACIGACGLAPVIMINDDTHGRLTPESIPEIISKYK 160 >gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 163 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE+S + ++YP + +S ++ L AQE+ G++S A +E +A +L + I+V E Sbjct: 2 LSEKSLAEIARERAKYPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 ATFY+ + L PVG R + VCG+ C L G + +++ ++ P +DG + +E Sbjct: 62 AATFYSMYDLQPVG-RHKLCVCGSVSCFLNGSDAILQHLSERLGVSPGETTADGLFTLQE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC +APM+ +G YE+LT E L+ ++ G+ D +R Sbjct: 121 VECLGACKDAPMLQVGDHYYENLTQESLDALLAKLR-GESDDVR 163 >gi|125972859|ref|YP_001036769.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum ATCC 27405] gi|256005729|ref|ZP_05430684.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 2360] gi|125713084|gb|ABN51576.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Clostridium thermocellum ATCC 27405] gi|255990302|gb|EEU00429.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 2360] gi|316940903|gb|ADU74937.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum DSM 1313] Length = 165 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +NE+I +Y ++ A++P+L AQE G++ + +A L++ V + TFY Sbjct: 16 EQKLNEIIEKYKNTK--GALVPVLHEAQEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 TQF L+P G + +QVC T C ++G ++E + K+ SDG S E C G Sbjct: 74 TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AC AP++MI D Y L P+ +E II+ + Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164 >gi|57641549|ref|YP_184027.1| NADH dehydrogenase subunit E [Thermococcus kodakarensis KOD1] gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus kodakarensis KOD1] Length = 154 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 30 ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89 I YPP S++IPLL R QE+ G++ R +E +AN L + RV +ATFY QF+ P Sbjct: 8 IRSYPPE--PSSLIPLLQRTQERFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEP 65 Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 +G + V+VC T C + G + + + ++ + DG ++ E V C G C AP+ Sbjct: 66 LG-KYVVKVCHGTACHVNGAVNIAQALKEELGIEEGQTTEDGLVTLERVACLGCCSLAPV 124 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +MI + + LTP+++ +++ G+ D Sbjct: 125 IMINEKVFGKLTPDKVRKLVKQLKEGKLDV 154 >gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] Length = 163 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E + + +YP + +SA++ L AQE+ GW+ IE VA +L + I+ E Sbjct: 2 LTENALAAIAAERRKYPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT + L PVG + + VCG+ C L G + ++ + ++ +DG + +E Sbjct: 62 VATFYTMYDLKPVG-KHKLCVCGSVSCFLNGSDDILAHLQKRLGIGIGETTADGLFTLQE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 VEC GAC +AP++ +G E LTPE ++ +I+ G D Sbjct: 121 VECLGACKDAPVLHLGDRYVEHLTPEGVDALIEQLRGGSSDV 162 >gi|119714788|ref|YP_921753.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614] gi|119535449|gb|ABL80066.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614] Length = 263 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S ++E+ + E+ +RYP R S ++P+L Q EG ++ IE A++L + V Sbjct: 1 MSLTQETYGELQEIAARYPEPR--SGLLPMLHLVQSAEGRITPEGIEACADLLGVTAAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG HV VC T C + G + + + ++ + DG ++ Sbjct: 59 SGVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDAIFDRLKSDLGVGNDETTEDGKITL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--------- 186 E +EC AC AP++M+ + +++TP+ IID G GP+I Sbjct: 118 EHIECNAACDYAPVMMVNWEFMDNMTPDTAARIIDDLRAGNEVHSTRGPRIVTWREAERV 177 Query: 187 ------DRISSAPAGGLTSLL 201 D PA G SL+ Sbjct: 178 LAGFPDDLADEGPAAGRASLV 198 >gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032] gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032] Length = 345 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 1/168 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E+ E+I+RYP R +SA++PLL Q +EG+VS A + A +L + +V Sbjct: 5 FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FYT ++ P G V VC T C + G +++ + + DG ++ E Sbjct: 65 VASFYTMYKRRPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTEDGKITLEH 123 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 EC AC P++ + D ++ + P+ ++D G T G + Sbjct: 124 AECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGNRPTPSRGAR 171 >gi|302871904|ref|YP_003840540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574763|gb|ADL42554.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor obsidiansis OB47] Length = 160 Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFRKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160 >gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM 2366] gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM 2366] Length = 170 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L EE QP FS +E++ RYP + +SA++P+L Q + GW+S AA++ VA Sbjct: 2 LKVEEQQPV--EFSPALLTKFDEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 LD+ I V E+A+FY+ + L P G + ++VC T PC L G EKL+ NK+ K Sbjct: 60 AYLDIQDIEVYEVASFYSMYFLKPQG-KYVLEVCRTGPCCLVGAEKLMGHIENKLGVKEN 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 +DG SW VEC AC P++ IG + YE+L ++++E+I+ Sbjct: 119 EVTADGLFSWRGVECLAACGYGPVLQIGPEYTFYENLNEQKVDELIEDLRK 169 >gi|78044572|ref|YP_359585.1| Fe-hydrogenase subunit gamma [Carboxydothermus hydrogenoformans Z-2901] gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 161 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E++S+Y + A+IP+L AQE G++ R +E ++ L + + +V +ATFY Sbjct: 14 KEKLKELLSQY--QGQKGALIPVLQGAQEIYGYLPREVMEEISRSLKIPFSKVYGVATFY 71 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF L P G R ++ C T C +RG K+ E +N++ D + E V C G Sbjct: 72 AQFHLKPRG-RNVIRACLGTACHVRGGAKVFETLKNELGIGDGETTPDLRFTLESVACIG 130 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP++M+ DTY LTP++++EI+ + Sbjct: 131 ACGLAPVIMVNNDTYGRLTPDKVKEILAKY 160 >gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a] gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E) (NDH-1, chain E) [Frankia alni ACN14a] Length = 257 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FS E+ E+I+RYP R +SA++PLL Q ++G V+ + A+ L + V Sbjct: 2 MAFSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEV 61 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C L G +++ ++ DG+++ Sbjct: 62 GAVATFYTMYKRRPVGD-YLVSVCTNLSCALLGGDEVFARVAERLGVGHDETTPDGSITL 120 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + Y+ + P+ I++ G+ G Sbjct: 121 EHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGERPAPTRG 168 >gi|312127643|ref|YP_003992517.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Caldicellulosiruptor hydrothermalis 108] gi|311777662|gb|ADQ07148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Caldicellulosiruptor hydrothermalis 108] Length = 160 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +EE+ ++E+I + + A+IP+L AQE G++ + +A L++ V Sbjct: 8 NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT+F L P G + VC T C ++G +K+++ + + DG S E Sbjct: 66 GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V+I Y L+ + +E+I+ + Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILLRY 160 >gi|317123849|ref|YP_004097961.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043] gi|315587937|gb|ADU47234.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043] Length = 255 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 19/224 (8%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 L E +P + E+ + EVI+RYP + +SA++PLL Q +G+V+ + + Sbjct: 14 HLRPESKEPYAPEVLEQLRVDAAEVIARYP--QKRSALLPLLHLVQSVDGYVTGRGVSLC 71 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A +LD+ V +ATFYTQF+ P G V VC T C + G +++ + + Sbjct: 72 AELLDLTEAEVSGVATFYTQFKRHPNGE-YTVGVCTNTLCAVMGGDQIFDTVAEHLGIGH 130 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 +DG ++ E +EC AC AP+VM + +++ TP+ +++D G+ GP Sbjct: 131 DETTADGKITLERIECNAACDYAPVVMTNWEFFDNQTPDSTVQLVDDLREGKDVRPTRGP 190 Query: 185 -------QIDRISS---------APAGGLTSLLDNNSKKRGKKK 212 Q+ R+ + P G SLL K Sbjct: 191 DRVCTFKQVSRVLAGFHDGLADQGPGAGPASLLGLRIAKEHGWT 234 >gi|288917187|ref|ZP_06411556.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f] gi|288351378|gb|EFC85586.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f] Length = 242 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +E++ E+I+RYP R +SA++P+L Q +EG V+ ++ A L + + V Sbjct: 1 MPLTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEEGAVTAEGVDFCAEQLGLTHAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C+LRG E + + + DGT++ Sbjct: 61 GAVATFYTMYKRRPVGDW-LVSVCTNLSCLLRGGEDVYKRLSANLGVGHDQTTEDGTITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + Y+ +TP+ E I+DA G+ G Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVTPDSAEGIVDALRRGERPAPTRG 167 >gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium marinum M] gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium marinum M] Length = 251 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P+ F ++S ++ + E+I RYP R SA++PLL Q ++ Sbjct: 12 RLGPPPEEPNQFTVEGAPQAYSPDALARLEIEAKEIIGRYPDQR--SALLPLLHLVQGED 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A ++ AN L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E ++ + SDG+++ +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197 +G+ G P R +S GL Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214 >gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong] gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong] Length = 192 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 101/161 (62%), Gaps = 2/161 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 FSFS E+ + ++I+ YP + SAV+ +L AQ Q W+S + IE VAN+L M YI Sbjct: 8 EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V EIA+FYT F L PVG + H+Q+CGTTPC LRG + ++ C+ + + + D Sbjct: 68 KVYEIASFYTMFNLQPVG-KYHIQICGTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E EC GAC NAP+V I D YE+LT ++++EII+ Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIKEIINNLHA 167 >gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans serovar Lai str. 56601] gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans serovar Lai str. 56601] Length = 159 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 + FSE S +++ +P R S ++P L Q + G+V + + +A + ++ Sbjct: 2 GYKFSETSEKRFQKMLKAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E ++ SD Sbjct: 60 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQK 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + EEVEC GAC APMV I D YE LTPE++++I+D + Sbjct: 119 FTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDLN 159 >gi|297625732|ref|YP_003687495.1| NADH-quinone oxidoreductase chain E [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921497|emb|CBL56051.1| NADH-quinone oxidoreductase chain E [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 243 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 18/202 (8%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 S + +EE+ + + +RYP +R SA++P+L Q +G VS A + VA I + Sbjct: 20 DQSTNITEETMAEMRAIAARYPDAR--SALMPMLHLVQSVDGRVSDAGMRAVAEIAGVNT 77 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFYT ++ P G H+ VC T C + G + L+ K+ DG Sbjct: 78 AQVNGVATFYTMYKRRPAG-HQHIGVCTTALCAVMGGDILLSHVEKKLGIHEGETTPDGK 136 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------ 186 S E +EC C AP++M+ + +++TP + +E++D + G+ G I Sbjct: 137 FSLERLECNAGCDFAPVMMVNWEYMDNMTPAKADELLDKLAAGETVKSTRGATITDWRSA 196 Query: 187 ---------DRISSAPAGGLTS 199 R P+ G +S Sbjct: 197 ERVLAGFDDGRADEGPSAGESS 218 >gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 + E ++ +++YP + QSAVIP L Q+ G W+ R ++ VA L M + V Sbjct: 10 LTPEMRAEIDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVY 69 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F L PVG R V +C C L+G E ++ K+ K D ++ + Sbjct: 70 EVATFYSMFDLEPVG-RHKVNICTNICCWLKGAEDIVAYTEKKLGIKLGETTPDQRITLK 128 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC AC APM+++ Y DLTPE++++I+DA Sbjct: 129 IEEECLAACTGAPMMVVDGHYYTDLTPEKIDQILDAL 165 >gi|332981825|ref|YP_004463266.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Mahella australiensis 50-1 BON] gi|332699503|gb|AEE96444.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Mahella australiensis 50-1 BON] Length = 162 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + VI RY + ++P++ +AQE G++ +A LD+ V +A Sbjct: 10 EEKFQELKTVIDRYKN--MEGPLMPIMHKAQEIFGYLPLEVQNFIAEELDIPLTDVYGVA 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F L P G + + +C T C ++G +K+++ + ++ DG + + Sbjct: 68 TFYSHFTLQPQG-KYTINICLGTACYVKGAQKVLDKLKEELKINEGETTPDGKFTIDATR 126 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + Y L P+ + +I+ + Sbjct: 127 CLGACGLAPVMMINGEVYGRLVPDDVPKILKRY 159 >gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)] gi|256785937|ref|ZP_05524368.1| NADH dehydrogenase subunit E [Streptomyces lividans TK24] gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24] gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24] Length = 290 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP SR SA++PLL Q +EG V+R ++ A++LD+ V +ATFYT + Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E ++ + DG ++ E +EC AC Sbjct: 92 RRRPSGD-YQVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TP ++ ++D G+ T G Sbjct: 151 FAPVVMVNWEFFDNQTPASVKALVDDLRAGRPVTPTRG 188 >gi|162452500|ref|YP_001614867.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161163082|emb|CAN94387.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 165 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 3/161 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 F+ + E ++++RYP Q+A IP+L QEQEGWVS + VA L ++ Sbjct: 8 EQFALTAERRTEFEKILARYPN--RQAACIPVLHLCQEQEGWVSERVLRWVAEQLGLSAA 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFYT F PVG + V VC T C L G ++++ C ++ DG + Sbjct: 66 HVQGVATFYTLFNKEPVG-KHQVWVCRTLSCALNGADQVLHHCEKRLGIHAGETTKDGKI 124 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + EC +C APM+ + +D +E LT E+++ I+D + Sbjct: 125 TLRTAECLASCGTAPMMQVDRDYHEGLTLEKVDAILDRLTR 165 >gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 161 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 + FSE S +++ +P R S ++P L Q + G+V + + +A + ++ Sbjct: 4 GYKFSETSEKRFQKMLEAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFYT + PVG + H+Q+CGT+ C LRG +++ E ++ SD Sbjct: 62 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + EEVEC GAC APMV I D YE LTPE++++I+D + Sbjct: 121 FTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDLN 161 >gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ] gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ] Length = 171 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72 SF F++ + + ISRYP R SAV+PLL Q+Q G+V R+AIE +A +L M Sbjct: 7 ESFRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRP 66 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V E+ FY+ + +PVG + VQVC TTPC LR + ++ C+ + + D Sbjct: 67 VHVREVVEFYSMYNTAPVG-KYLVQVCKTTPCWLRRSDDVLNACKRVLCVRVGETTKDNL 125 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + EVEC GACVNAP+V I D YE+L E +E+I+ G Sbjct: 126 FTLREVECLGACVNAPVVQINDDYYENLDAESMEKILLKLKEGN 169 >gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis ATCC 25486] gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces pristinaespiralis ATCC 25486] Length = 276 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 E+I+RYP SR SA++PLL Q +EG VSR + A +LD+ V +ATFY Sbjct: 25 EADAKEIIARYPGSR--SALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFY 82 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + ++ P G V VC T C + G + + E + + DG ++ E +EC Sbjct: 83 SMYRRKPSGE-YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHIECNA 141 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ TP+ ++++D G+ G Sbjct: 142 ACDFAPVVMVNWEFFDNQTPQSAKQLVDDLRAGEQVVPTRG 182 >gi|303239627|ref|ZP_07326152.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus CD2] gi|302592798|gb|EFL62521.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus CD2] Length = 164 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E+IS+Y +R A+IP+L AQE G++ + ++ L++ V + TFYT Sbjct: 17 QKLQEIISKYKDTR--GALIPVLHEAQEVYGYLPIEVQKKISEGLNVPLAEVYGVVTFYT 74 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 QF L+P G + + VC T C ++G ++++ + K+ + + DG S + C GA Sbjct: 75 QFSLNPKG-KYKISVCMGTACYVKGSGQILDKFKEKLGLEVGQCSEDGMFSLDACRCIGA 133 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+VMI D Y L P+ +E II + Sbjct: 134 CGLAPVVMINDDVYGRLVPDDIEGIIKKYKE 164 >gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda] gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda] Length = 184 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 2/161 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73 FSFS ++ + ++I+ YP + SAV+ +L AQ Q W+S + IE VA +L M YI Sbjct: 8 EFSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYI 67 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V EIA+FYT F L P+G + H+Q+C TTPC LRG + ++ C+ + + + D Sbjct: 68 KVYEIASFYTMFNLQPIG-KYHIQICCTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E EC GAC NAP+V I D YE+LT +++EEII+ Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIEEIINNLHA 167 >gi|227874588|ref|ZP_03992751.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269977612|ref|ZP_06184579.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1] gi|306817872|ref|ZP_07451611.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC 35239] gi|307701384|ref|ZP_07638405.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris FB024-16] gi|227844797|gb|EEJ54943.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243] gi|269934215|gb|EEZ90782.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1] gi|304649351|gb|EFM46637.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC 35239] gi|307613545|gb|EFN92793.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris FB024-16] Length = 234 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 1/165 (0%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E E+I+RYP +SA++P+L Q ++G+VS IE+ A +L + V +A Sbjct: 10 ERLVKEAQEIINRYPEGHARSALLPMLHLVQSEDGYVSPNGIELCAELLGLNPAEVSAVA 69 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFYTQ++ P G V VC + C + G +++ + + +DG ++ E +E Sbjct: 70 TFYTQYKRRPNGE-YTVGVCVNSLCAVMGGDEIWDTVCEHLGVGHEETTADGKITLEALE 128 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 C AC AP++M+ + +++ TPE +++D G GP Sbjct: 129 CNAACDYAPVIMVNWEFFDNQTPESAVKLVDDLRAGNPVGTTRGP 173 >gi|117927480|ref|YP_872031.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B] gi|117647943|gb|ABK52045.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B] Length = 269 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 19/207 (9%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +V++RYP R +SA++PLL Q ++G+VS I +VA+IL + V +ATFY Sbjct: 53 RERAAQVLARYP--RPRSALMPLLYLVQAEQGYVSADGIRLVADILGLTTAEVTAVATFY 110 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G R V VC T C + G + + + R + + DG ++ E +EC Sbjct: 111 TMYRRRPCG-RYLVGVCTNTLCAILGGDAIFDALREHLGIENGETTPDGAVTLEHIECNA 169 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS------------ 190 AC AP+VM+ + +++ TP E++D G G + + Sbjct: 170 ACDYAPVVMVNWEFFDNQTPASARELVDRLRAGDPPMPTRGAPLRTFTEISQLLAGFPDD 229 Query: 191 ---SAPAGGLTSLLDNN-SKKRGKKKK 213 + P+ G SL ++ RG+ Sbjct: 230 LADAGPSAGPASLAGLELARSRGEAAP 256 >gi|254172735|ref|ZP_04879409.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp. AM4] gi|214032891|gb|EEB73719.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp. AM4] Length = 154 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+ ++ YPP S++IPLL R QE+ G++ R +E +A L + RV +ATFY Sbjct: 2 EAEVD-YLTSYPPE--PSSLIPLLQRTQERFGYLPREVLERIAEYLGIPLSRVYGVATFY 58 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+ P+G + V++C T C + G +++ ++ + DG ++ E V C G Sbjct: 59 AQFRFEPLG-KYVVRICHGTACHVNGAVTIVQAITEELGIEEGQTTEDGLITLERVACLG 117 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C AP+VMI + LTP+++ ++I G+ D Sbjct: 118 CCSLAPVVMINDKVFGKLTPDKVRKLIRKLREGKLDV 154 >gi|317057599|ref|YP_004106066.1| NADH-quinone oxidoreductase subunit E [Ruminococcus albus 7] gi|315449868|gb|ADU23432.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 7] Length = 163 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F + E + EVI+++ ++P L AQ G++ +++A+ L ++ Sbjct: 8 PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S Sbjct: 66 VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP++++ +D Y L PE++ +I+D++ Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPEQVAKILDSYK 163 >gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823] gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823] Length = 178 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 5/180 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59 +SV + ++ +P FS E + V I+ +P + +SA++ +L A+E+ G W+S Sbjct: 3 ISVTHNSTDQAEP---QFSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVP 59 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 + VA +L++ I V E+ATFYT F + G + ++VC T PCML G +++IE NK Sbjct: 60 TMNYVAGLLNIQPIEVYEVATFYTMFNIEKPG-KVVLEVCRTGPCMLVGSDQIIEHIENK 118 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + K ++DG + + EC GAC PM+ GK +E LTP +++E++D + Sbjct: 119 LDIKVGQTSADGMFTLKTAECLGACGYGPMLQCGKHYHEHLTPAKVDELLDTLRKEHSEK 178 >gi|289207897|ref|YP_003459963.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. K90mix] gi|288943528|gb|ADC71227.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. K90mix] Length = 176 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 S+ ++ ++RYP + +SAV+ L Q ++G++S A ++ VA L + I V Sbjct: 19 ELSDHEREEIDAWLARYPEDQKRSAVLGALRAVQHEDGYLSTAKMDAVAEYLGLPAIAVY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ +FY+ ++L PVG + + VC CMLRG E++IE N++ K DG + Sbjct: 79 EVGSFYSMYELEPVG-KHTIMVCNNISCMLRGSEQIIEHLENRLGIKLGESTPDGKFYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC AC APM+ + YE+LTPE+++EI+D Sbjct: 138 MEEECLAACCGAPMMQVDHVYYENLTPEKVDEILDGL 174 >gi|326382759|ref|ZP_08204449.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395] gi|326198349|gb|EGD55533.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 VI+RYP R SA++PLL Q +G+++RA + A L + +V +ATFY+ ++ Sbjct: 48 VIARYP--RSGSALLPLLHLVQSHDGYLTRAGVAFCAEQLGLTAAQVASVATFYSMYRRE 105 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G + ++ + +P DG ++ E VEC AC AP Sbjct: 106 PTGD-YLVGVCTNTLCAVMGGDAILSELTETLGIRPGETTPDGRVTLEHVECNAACDFAP 164 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 +VM+ + ++D TP+ + ++D +G GP+I Sbjct: 165 VVMVNWEFFDDQTPDSAKALVDDLRSGVPRAPSRGPEI 202 >gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 252 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P++F ++S E + E+I RYP R SA++PLL Q ++ Sbjct: 12 RLGPPPEEPNAFVTEGAPQTYSPEVRARLEVDAKEIIGRYPDKR--SALLPLLHLVQAED 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A +E + L ++ V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLEFCGDQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAVF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197 +G G + R +S GL Sbjct: 189 SGDPKPPTRGAPLCAFRETSRILAGL 214 >gi|325681308|ref|ZP_08160837.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8] gi|324106999|gb|EGC01286.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8] Length = 163 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F + E + EVI+++ ++P L AQ G++ +++A+ L ++ Sbjct: 8 PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+QF L+P G + + VC T C ++G +K++E K+ K +DG S Sbjct: 66 VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP++++ +D Y L P+++ +I+D++ Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPDQVAKILDSYK 163 >gi|220931475|ref|YP_002508383.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix orenii H 168] gi|219992785|gb|ACL69388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix orenii H 168] Length = 162 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++E+I +Y +IP+L AQE G++ +A L + +V + +FY Sbjct: 14 LKKLDEIILKYKD--KPGPLIPVLHEAQELYGYLPEEVQSYIAEGLGVPVSKVSGVVSFY 71 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F P G + VC T C ++G E+++ + ++ + + DG + + C G Sbjct: 72 SFFTTKPKGE-HTINVCMGTACYVKGAEEILNRLKEELGIEEGETSEDGKFTMVGMRCLG 130 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AC AP+V I Y +TPE++ EII+++ Sbjct: 131 ACSLAPVVTIDDKVYGKVTPEKMMEIIESYRK 162 >gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 159 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 5/161 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 S+ FSE S +++ +P R S V+P L Q + G+V + + +A L ++ Sbjct: 2 SYKFSEASEKRFRKMLEVFPDKR--SLVLPCLYILQRENGFVDQDGMAYIAERLGDPISL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFYT + PVG + H+Q+CGT+ C L G +++ E ++ SDG Sbjct: 60 AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLLGSDEIEEHICKRLGIHMGQTTSDGK 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + EEVEC GAC APMV IG D YE LTPE+++ I+D + Sbjct: 119 FTLEEVECLGACGYAPMVQIGDDFYEQLTPEKVDRILDNLN 159 >gi|167772593|ref|ZP_02444646.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM 17241] gi|167665071|gb|EDS09201.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM 17241] Length = 164 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F+ + E + EVI+ + + A++P+L AQE G++ +++++ LD+ Sbjct: 9 PFTGTAEQEAKLREVIAAHKGQK--GALMPVLQGAQEIYGYLPIEVQKMISDGLDIPLEE 66 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFY+QF L+P G + VC T C ++G + + K+ + DG S Sbjct: 67 IYGVATFYSQFTLNPKGQ-YKISVCLGTACYVKGAGDIFNRLQEKLGIESGMCTPDGKFS 125 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP++ I + Y LT + ++ I+ + Sbjct: 126 LDACRCIGACGLAPVMTINDEVYGRLTVDDVDTILAKYR 164 >gi|294630800|ref|ZP_06709360.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14] gi|292834133|gb|EFF92482.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14] Length = 293 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E E+I+RYP SR SA++P+L Q +EG V+R + A++L + V +A Sbjct: 31 ERLERDAREIIARYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCADVLGLTTAEVTAVA 88 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFYT ++ P G V VC T C + G + L E + + DG ++ E +E Sbjct: 89 TFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDALFETLQEHLGVGNGETTDDGKVTLEHIE 147 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AC AP+VM+ + +++ TP ++ ++D G+ T G Sbjct: 148 CNAACDFAPVVMVNWEFFDNQTPASVKRLVDDLRAGRPVTPTRG 191 >gi|332830192|gb|EGK02820.1| hypothetical protein HMPREF9455_01070 [Dysgonomonas gadei ATCC BAA-286] Length = 175 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75 + S+E +NE++S YP + +SA++P+L Q+ W+S ++ VA IL++ I V Sbjct: 12 NMSDELMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 71 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFYT F PV + + C T C LRG E L++ K+ K DG S Sbjct: 72 YEVVTFYTMFNQKPV-AKYMFEFCRTACCGLRGGEDLMDYTCQKLGVKQGEITPDGMFSV 130 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 VEC GAC PM+ +G + +E+LT ++++ +I+ G+ Sbjct: 131 VGVECLGACGYGPMLQLGDNYHENLTKDKIDTLIEDCKEGK 171 >gi|289522153|ref|ZP_06439007.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503989|gb|EFD25153.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 161 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + + E+++ P Q +IP+L Q + G++ A+ ++ L M + + Sbjct: 10 TVDVVEKTKEIVA--PWKGKQGGLIPILQEVQREFGYLPEDALLTISRELKMPKAEIYGV 67 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY QF L P G R ++VC T C +RG +++E + + D + E V Sbjct: 68 ATFYAQFHLKPRG-RHIIRVCRGTACHVRGSLQILEKIKQTLGIDENETTEDLRFTLEPV 126 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++M+ +DT+ +TP++++ I+D + Sbjct: 127 ACLGACGLAPVMMVDEDTHGRMTPDKIQSILDRY 160 >gi|256821519|ref|YP_003145482.1| NADH-quinone oxidoreductase subunit E [Kangiella koreensis DSM 16069] gi|256795058|gb|ACV25714.1| NADH-quinone oxidoreductase, E subunit [Kangiella koreensis DSM 16069] Length = 164 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ IS+YP R +SA+IP+L QE+ G +SR A++ A+ L++ +I E Sbjct: 10 LSAESIEKIDLWISKYPTERKRSAIIPVLTIVQEELGHLSREAMDASADYLEIPHIAAYE 69 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+ F+L P G + V +C CM+ G E L + ++++ +P + DG +S +E Sbjct: 70 VATFYSMFRLEP-GGKHVVSLCTNVSCMMAGSEALKKWFKDELGIEPGQTSKDGRISLKE 128 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 VEC AC APM+ + K +E+LT E++ ++I + Sbjct: 129 VECMAACGGAPMLEVDKQYHENLTVEKMADLIRDLN 164 >gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406] gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406] Length = 177 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F FSE S + E+ +RYP R +SA++P+L AQ++ G W+ ++ VA++LD+ I Sbjct: 8 FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V E+A+FY+ + L PVG + + C T PC L G E+LIE +K+ K ++DG + Sbjct: 68 VYEVASFYSMYNLKPVG-KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQTSADGRFT 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + VEC G+C APM IG YE+LT E++++II+ Sbjct: 127 IKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKIIE 162 >gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM 40736] gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM 40736] Length = 303 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFYT + Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 92 RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TP ++D G+ T G Sbjct: 151 FAPVVMVNWEFFDNQTPSSARRLVDDLRAGRPVTPTRG 188 >gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39] gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39] Length = 170 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 5/171 (2%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L EE QP +FS E++SRYP + +SA++P+L Q + GW+S A++ VA Sbjct: 2 LKVEEQQPV--AFSAALLEKCAEIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDKVA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L++ I V E+A+FYT + L P G + +++C T PC L G EKL++ + K Sbjct: 60 EYLNIQPIEVYEVASFYTMYFLKPQG-KYMLEICRTGPCCLVGAEKLMDHLEQTLGVKEG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174 DG SW VEC AC P++ IG + YE+L ++L+++I Sbjct: 119 EVTPDGLFSWRGVECLAACGYGPVLQIGPEYTFYENLDKQKLDDLIQDLRK 169 >gi|325067541|ref|ZP_08126214.1| NADH dehydrogenase subunit E [Actinomyces oris K20] Length = 256 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT HV VC C + G +++ + + DGT+S E VEC AC Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198 AP+VM+ + +++ TP+ +I A G+ GP + +R+ + G T Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226 >gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC 25259] gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC 25259] Length = 168 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 S E+ ++ +++YP + QSAV+ L AQ ++GW+ I+ VA+ L M I Sbjct: 12 ELSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYLQMPPIAAY 71 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY + PVG R + VC PC LRG ++ + K+ DG + + Sbjct: 72 EVATFYNMYDTQPVG-RHKITVCTNLPCALRGAGEIAAHLKEKLGIGFGETTEDGRYTLK 130 Query: 137 EVECQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFS 173 E EC GAC +APM + T + LTPE+++E++D Sbjct: 131 EGECMGACGDAPMCLHNNHTMHTHLTPEKVDELLDKLK 168 >gi|326772148|ref|ZP_08231433.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505] gi|326638281|gb|EGE39182.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505] Length = 256 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVGT HV VC C + G +++ + + DGT+S E VEC AC Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198 AP+VM+ + +++ TP+ +I A G+ GP + +R+ + G T Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226 >gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99] gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone oxidoreductase chain E) [Mycobacterium ulcerans Agy99] Length = 251 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P+ F ++ ++ + E+I RYP R SA++PLL Q ++ Sbjct: 12 RLGPPPEEPNQFTVEGAPQAYPPDALARLEIEAKEIIGRYPDQR--SALLPLLHLVQGED 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A ++ AN L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E ++ + SDG+++ +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197 +G+ G P R +S GL Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214 >gi|320532545|ref|ZP_08033354.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str. F0337] gi|320135239|gb|EFW27378.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str. F0337] Length = 256 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY Sbjct: 45 QDDIERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFY 104 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 +QF+ PVGT HV VC C + G +++ + DGT+S E VEC Sbjct: 105 SQFRRHPVGT-YHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERVECNA 163 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAG 195 AC AP+VM+ + +++ TP+ +I A G+ GP + +R+ + Sbjct: 164 ACDYAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVVPTRGPETVPTFRENERLLAGFED 223 Query: 196 GLT 198 G T Sbjct: 224 GRT 226 >gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152] gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM 10152] Length = 245 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 6/176 (3%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 E + PS E A+ E+I RYP R SA++PLL Q ++G+V+ IE A Sbjct: 21 PEPYPPSVR---ERLALDAKEIIGRYPQPR--SALLPLLHLVQSEDGYVTATGIEFCAEQ 75 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+ F+ +P G HV VC T C + G + ++ + Sbjct: 76 LGLTGAEVTAVATFYSMFRRTPTGD-YHVGVCTNTLCAVLGGDAILASLTEHLGIAAGET 134 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +DG ++ E +EC AC AP+VM+ + +++ TPE ++DA G+ G Sbjct: 135 TADGAITVEHIECNAACDFAPVVMVNWEFFDNQTPESARALVDALRAGEPVRPSRG 190 >gi|326329614|ref|ZP_08195936.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1] gi|325952610|gb|EGD44628.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1] Length = 213 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 3/171 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S + E+ + E+ +RYP +R S ++P+L Q EG V+ I+ A++L + V Sbjct: 1 MSLAPETFDELREIAARYPQAR--SGLLPMLHLVQSVEGRVTPEGIQACADVLGLTPAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG R HV VC T C + G +++ R K+ +DG ++ Sbjct: 59 SGVATFYTMYKRHPVG-RHHVGVCTNTLCAVMGGDEIFACLREKLEVGNDETTADGAITL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 E +EC AC AP+VM+ + +++ TPE +++D G+ G +I Sbjct: 118 EHIECNAACDYAPVVMVNWEFFDNQTPESAAQLVDDLREGREVVASRGARI 168 >gi|239980148|ref|ZP_04702672.1| NADH dehydrogenase subunit E [Streptomyces albus J1074] gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074] gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074] Length = 291 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +I+RYP SR SA++P+L Q +EG+V+R + A +L + V +ATFY Sbjct: 31 KADAEAIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + + + + DG ++ E +EC Sbjct: 89 TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFDELKEHLGVGNDETTEDGKITLEHIECNA 147 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ TP+ + ++D G+ G Sbjct: 148 ACDYAPVVMVNWEFFDNQTPDSAKRLVDDLREGRTVEPTRG 188 >gi|288942130|ref|YP_003444370.1| NADH-quinone oxidoreductase subunit E [Allochromatium vinosum DSM 180] gi|288897502|gb|ADC63338.1| NADH-quinone oxidoreductase, E subunit [Allochromatium vinosum DSM 180] Length = 175 Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 4/175 (2%) Query: 1 MSVR--RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVS 57 MS R A E S FS E ++ I++YPP QSAV+P L Q+ G W++ Sbjct: 1 MSFRNAPQAVEHDVDKSALFSPEIREAIDAHIAKYPPEWKQSAVMPALSIVQDANGGWLT 60 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 ++ VA LDM + V E+ATFY + L+P G R V VC + CML G E+LIE Sbjct: 61 TELMDDVAAYLDMPAVSVYEVATFYGMYDLTPQG-RHKVCVCNSISCMLNGSEELIEHVE 119 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +K K SDG + +EVEC GAC +AP V++ K +E LTPE L+++ID Sbjct: 120 HKYGVKVGETTSDGRFTLKEVECLGACRDAPAVLLDKVYHEKLTPESLDKLIDGL 174 >gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 252 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P++F S+ E + E++ RYP R SA++PLL Q Q+ Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A +E L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 DALKEHLGIDNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197 G+ G + R +S GL Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214 >gi|282860723|ref|ZP_06269789.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE] gi|282564459|gb|EFB69995.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE] Length = 285 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 EVI+RYP SR SA++PLL Q +EG+VSR + A +L + V +ATFY Sbjct: 29 EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAELLGLTTAEVTAVATFY 86 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + + ++ + DG ++ E +EC Sbjct: 87 TMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDRLKDHLGVGNDETTEDGKVTLEHIECNA 145 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186 >gi|296103966|ref|YP_003614112.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058425|gb|ADF63163.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 166 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F SE + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166 >gi|160935013|ref|ZP_02082399.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753] gi|156866466|gb|EDO59838.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753] Length = 164 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 3/165 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 ++ FS ++E + E+I ++ A++P+L AQ G++ ++VA+ Sbjct: 2 QKRISNIPFSGTKEQEAQLFEIIEKHKNE--PGAIMPVLQEAQNVYGYLPIEVQQMVADG 59 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+QF L+P G + ++ VC T C ++G K++E ++ + Sbjct: 60 LGVPLSEVFGVATFYSQFSLTPKG-KYNISVCLGTACYVKGSGKILEELSKELGIEAEEC 118 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S C GAC AP++ I D Y L PE ++ I+ + Sbjct: 119 TEDGKFSLTACRCIGACGLAPVITINDDVYGRLVPEDVKGILAKY 163 >gi|302389264|ref|YP_003825085.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Thermosediminibacter oceani DSM 16646] gi|302199892|gb|ADL07462.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E V+E++ +Y + ++ +L AQ G++ VA LD+ V Sbjct: 12 QEKLQKVDEMLKKYKGQK--GVLLQVLQEAQRIVGYLPLEVQIRVAEALDVTLSEVYSTI 69 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F L P G + ++VC T C ++G +K++ ++ K D S E Sbjct: 70 TFYSFFNLKPRG-KYQIRVCLGTACYVKGADKVLNRIEQELKIKVGETTEDLKFSLEACR 128 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+VMI D Y LTP+R+ EI+ + Sbjct: 129 CVGACGLAPVVMINDDVYGRLTPDRVPEILKNY 161 >gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104] gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104] Length = 252 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P++F S+ E + E++ RYP R SA++PLL Q Q+ Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A +E L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197 G+ G + R +S GL Sbjct: 189 AGKPRHPTRGAPLCVFRETSRILAGL 214 >gi|281417058|ref|ZP_06248078.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum JW20] gi|281408460|gb|EFB38718.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum JW20] Length = 165 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +NE+I +Y ++ A++P+L A+E G++ + +A L++ V + TFY Sbjct: 16 EQKLNEIIEKYKNTK--GALVPVLHEAEEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 TQF L+P G + +QVC T C ++G ++E + K+ SDG S E C G Sbjct: 74 TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AC AP++MI D Y L P+ +E II+ + Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164 >gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca ATCC 27029] gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5] gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca ATCC 27029] gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5] Length = 364 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SFSE + E+I+RYP R +SA++PLL Q +EG+VS A +E A +L + +V Sbjct: 1 MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ P G V VC T C + G +K+ + + +DG ++ Sbjct: 61 GAVATFYTMYKRKPTGD-YLVSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETTADGKITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 E EC AC P++ + D ++++ P+ ++++ G G + Sbjct: 120 EHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAGGRPMPTRGAR 169 >gi|15802832|ref|NP_288859.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 EDL933] gi|15832423|ref|NP_311196.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. Sakai] gi|168748134|ref|ZP_02773156.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4113] gi|168755037|ref|ZP_02780044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4401] gi|168761276|ref|ZP_02786283.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4501] gi|168767911|ref|ZP_02792918.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4486] gi|168772989|ref|ZP_02797996.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4196] gi|168780140|ref|ZP_02805147.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4076] gi|168787192|ref|ZP_02812199.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC869] gi|168798455|ref|ZP_02823462.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC508] gi|195935662|ref|ZP_03081044.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. EC4024] gi|208807945|ref|ZP_03250282.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4206] gi|208812470|ref|ZP_03253799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4045] gi|208821285|ref|ZP_03261605.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4042] gi|209399385|ref|YP_002271694.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4115] gi|217327662|ref|ZP_03443745.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. TW14588] gi|254794177|ref|YP_003079014.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. TW14359] gi|261223261|ref|ZP_05937542.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. FRIK2000] gi|261259189|ref|ZP_05951722.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. FRIK966] gi|291283526|ref|YP_003500344.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7 str. CB9615] gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. EDL933] gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. Sakai] gi|187771310|gb|EDU35154.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4196] gi|188017168|gb|EDU55290.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4113] gi|189002112|gb|EDU71098.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4076] gi|189357595|gb|EDU76014.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4401] gi|189362963|gb|EDU81382.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4486] gi|189368261|gb|EDU86677.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4501] gi|189372933|gb|EDU91349.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC869] gi|189378906|gb|EDU97322.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC508] gi|208727746|gb|EDZ77347.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4206] gi|208733747|gb|EDZ82434.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4045] gi|208741408|gb|EDZ89090.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4042] gi|209160785|gb|ACI38218.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. EC4115] gi|209765098|gb|ACI80861.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765100|gb|ACI80862.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765102|gb|ACI80863.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765104|gb|ACI80864.1| NADH dehydrogenase I chain E [Escherichia coli] gi|209765106|gb|ACI80865.1| NADH dehydrogenase I chain E [Escherichia coli] gi|217320029|gb|EEC28454.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7 str. TW14588] gi|254593577|gb|ACT72938.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7 str. TW14359] gi|290763399|gb|ADD57360.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7 str. CB9615] gi|320192094|gb|EFW66739.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. EC1212] gi|320641112|gb|EFX10591.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. G5101] gi|320646500|gb|EFX15419.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. 493-89] gi|320651597|gb|EFX19977.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. H 2687] gi|320657349|gb|EFX25151.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663051|gb|EFX30368.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. USDA 5905] gi|320667869|gb|EFX34777.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. LSU-61] gi|326339636|gb|EGD63447.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. 1125] gi|326344098|gb|EGD67859.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7 str. 1044] Length = 166 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ +LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHANLTPEAIPELLERYK 166 >gi|261340673|ref|ZP_05968531.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus ATCC 35316] gi|288317087|gb|EFC56025.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus ATCC 35316] gi|295098076|emb|CBK87166.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 166 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F SE + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYEIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 KVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166 >gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium ATCC 25291] Length = 252 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P++F S+ E + E++ RYP R SA++PLL Q Q+ Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A +E L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + DG+++ + +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197 G+ G + R +S GL Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214 >gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018] gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22] gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018] gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22] Length = 161 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 3/156 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +SF ++ E+ I E +SRYP + S ++P L QEQEGWVS A+ VA+ L I Sbjct: 2 NSFKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPI 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V E+ATFYT F L P+G + H+++C T CM+ G ++L + ++ + + ++DG Sbjct: 60 QVYEVATFYTMFNLKPIG-KYHIELCKTVSCMVCGAKELKQYIKDVLGLESGQTSADGLF 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ EVECQGAC +APM+ + + LT E+LE+II Sbjct: 119 TFTEVECQGACGDAPMIALNNVYHGKLTKEKLEKII 154 >gi|283786353|ref|YP_003366218.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium ICC168] gi|282949807|emb|CBG89430.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium ICC168] Length = 166 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F SE + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + ++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166 >gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309] gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309] Length = 236 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 21/206 (10%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 S++ ++ + ++I+RYP +SA++P+L Q +G+VS I+ ++ LD+ Sbjct: 1 MSYTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFYTQ++ P G V VC C + G +++ E K+ + DG Sbjct: 61 RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184 ++ E +EC AC AP+VM+ + +++ +PE +ID G+ GP Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179 Query: 185 QIDRISS---------APAGGLTSLL 201 + +R+ + P+ G +LL Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLL 205 >gi|225572037|ref|ZP_03780901.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM 10507] gi|225040472|gb|EEG50718.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM 10507] Length = 164 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 3/165 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 + +FS +EE + +VI + A++P+L +AQ+ G++ + ++++++ Sbjct: 2 PNKKTTVAFSGTEEQEEALRKVIEEMKEEK--GALMPILQKAQDIYGYLPKEVMKIISDE 59 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 + ++ +ATFY+QF L+P G + + VC T C ++G + K+ Sbjct: 60 TQIPMEKIYGVATFYSQFTLNPKG-KYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGEC 118 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++MI + Y LT + +++I+ + Sbjct: 119 TPDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163 >gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC 17982] gi|153798275|gb|EDN80695.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 21/206 (10%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 S++ ++ + ++I+RYP +SA++P+L Q +G+VS I+ ++ LD+ Sbjct: 1 MSYTPDTLARLQADATQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFYTQ++ P G V VC C + G +++ E K+ + DG Sbjct: 61 RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184 ++ E +EC AC AP+VM+ + +++ +PE +ID G+ GP Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179 Query: 185 QIDRISS---------APAGGLTSLL 201 + +R+ + P+ G +LL Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLL 205 >gi|317492620|ref|ZP_07951047.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919370|gb|EFV40702.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 166 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 7/173 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS + LA+EE F S+ + + Y R +A I L Q++ GWV A Sbjct: 1 MSDQSLAKEEV----FVLSDSAREAIEHEKHHYEDPR--AASIEALKIVQKEHGWVPDGA 54 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A +LD+ V +ATFY+Q PVG R ++ C + C + G + + K+ Sbjct: 55 IYAIAEVLDIPAADVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHINGYQGIQAALERKL 113 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + KP DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 114 NIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPENVVELLEQYK 166 >gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex quinquefasciatus] Length = 170 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 1/139 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+EE+ V+ +++ YP + A+IPLL AQ Q GW+ +A Sbjct: 30 LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA+IL + +RV E+ATFYT F P GT H+QVC TTPC LRG ++++ VC+ K+ Sbjct: 90 MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148 Query: 121 HQKPLHRNSDGTLSWEEVE 139 P DG + E Sbjct: 149 GISPGETTKDGKFTISENR 167 >gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C] gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C] Length = 245 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E E+I RYP SR SA++PLL Q +EG+VSR I A +L + V +A Sbjct: 22 ERLEADAKEIIGRYPDSR--SALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEVTAVA 79 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFYT ++ P G V VC T C + G + + + + + +DG ++ E +E Sbjct: 80 TFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLEHIE 138 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AC AP+VM+ + +++ TP+ + ++D G+ G Sbjct: 139 CNAACDYAPVVMVNWEFFDNQTPQSAKALVDDLLAGRPVEPTRG 182 >gi|320354159|ref|YP_004195498.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] gi|320122661|gb|ADW18207.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] Length = 168 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS R E +P F+F + + RYP +S ++P L QEQEGW+S A Sbjct: 1 MSDRSQLIETGKP--FAFDAQRDAEFERLAKRYPT--RESLILPSLWLVQEQEGWISAEA 56 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A+ + V E ATFYT + L P G + H+ VC T C L G +++++ + ++ Sbjct: 57 MAYIADRIGTFASMVYEAATFYTMYNLQPKG-KYHICVCRTLSCYLLGKQEIVDYLQQEL 115 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 KP ++DG S EEVEC G C AP+V + + YE++ ++L+E++ Sbjct: 116 GIKPGDVSADGEFSLEEVECLGHCGTAPVVQVNGEFYENMNVDKLKELLATLK 168 >gi|304398213|ref|ZP_07380087.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB] gi|304354079|gb|EFM18452.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB] Length = 171 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AINAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPSLLEQYQ 171 >gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus XylebKG-1] gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus XylebKG-1] Length = 285 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P EV++RYP SR SA++PLL Q +EG+VSR + A LD+ Sbjct: 19 PYPAEVRARLDADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAETLDLTT 76 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFY+ ++ P G V VC T C + G + + + + + DG Sbjct: 77 AEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGK 135 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 136 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186 >gi|157779398|gb|ABV71242.1| NADPH-dependent sulfur oxidoreductase A subunit [Thermococcus litoralis DSM 5473] Length = 154 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E I Y P+ S++IPLL + QE G++ R A+E ++ L + RV +ATFY QF+ Sbjct: 6 EYIYNYEPN--PSSLIPLLQKTQEIFGYLPREALEEISKYLKLPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G + +++C T C + G + + + ++ + DG ++ E V C G C A Sbjct: 64 EPLG-KYVIKICHGTACHVNGAVNISQAIKEEVGVEEGQTTQDGLITLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++MI + LTPE++ +II G+ Sbjct: 123 PVIMINDKVFGKLTPEKVRKIIKNLKEGK 151 >gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC 39149] gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC 39149] Length = 295 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 1/168 (0%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+E++ E+I+RYP R +SA++PLL Q +EG+VS + +E A +L + +V Sbjct: 4 FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ P G V VC T C + G +++ + + +DGT++ E Sbjct: 64 VATFYTMYKRKPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTADGTVTLEH 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 EC AC P++ + D ++ + P+ +++ +G G + Sbjct: 123 AECLAACDYGPVMTVNYDFFDGVDPQTALGVVEELRSGGRPMPTRGAR 170 >gi|16130220|ref|NP_416788.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. MG1655] gi|24113657|ref|NP_708167.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 301] gi|26248672|ref|NP_754712.1| NADH dehydrogenase subunit E [Escherichia coli CFT073] gi|30063711|ref|NP_837882.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 2457T] gi|74312803|ref|YP_311222.1| NADH dehydrogenase subunit E [Shigella sonnei Ss046] gi|82544763|ref|YP_408710.1| NADH dehydrogenase subunit E [Shigella boydii Sb227] gi|89109103|ref|AP_002883.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. W3110] gi|91211577|ref|YP_541563.1| NADH dehydrogenase subunit E [Escherichia coli UTI89] gi|110642489|ref|YP_670219.1| NADH dehydrogenase subunit E [Escherichia coli 536] gi|110806248|ref|YP_689768.1| NADH dehydrogenase subunit E [Shigella flexneri 5 str. 8401] gi|117624474|ref|YP_853387.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1] gi|157154944|ref|YP_001463628.1| NADH dehydrogenase subunit E [Escherichia coli E24377A] gi|157161773|ref|YP_001459091.1| NADH dehydrogenase subunit E [Escherichia coli HS] gi|170019406|ref|YP_001724360.1| NADH dehydrogenase subunit E [Escherichia coli ATCC 8739] gi|170081902|ref|YP_001731222.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. DH10B] gi|170683908|ref|YP_001744483.1| NADH dehydrogenase subunit E [Escherichia coli SMS-3-5] gi|170767591|ref|ZP_02902044.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii TW07627] gi|187730819|ref|YP_001881106.1| NADH dehydrogenase subunit E [Shigella boydii CDC 3083-94] gi|188496197|ref|ZP_03003467.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638] gi|191170105|ref|ZP_03031659.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11] gi|193062229|ref|ZP_03043324.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22] gi|193068223|ref|ZP_03049187.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019] gi|194427174|ref|ZP_03059725.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171] gi|194433323|ref|ZP_03065603.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012] gi|194436177|ref|ZP_03068279.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1] gi|209919733|ref|YP_002293817.1| NADH dehydrogenase subunit E [Escherichia coli SE11] gi|215487498|ref|YP_002329929.1| NADH dehydrogenase subunit E [Escherichia coli O127:H6 str. E2348/69] gi|218548266|ref|YP_002382057.1| NADH dehydrogenase subunit E [Escherichia fergusonii ATCC 35469] gi|218554841|ref|YP_002387754.1| NADH dehydrogenase subunit E [Escherichia coli IAI1] gi|218559198|ref|YP_002392111.1| NADH dehydrogenase subunit E [Escherichia coli S88] gi|218690445|ref|YP_002398657.1| NADH dehydrogenase subunit E [Escherichia coli ED1a] gi|218695884|ref|YP_002403551.1| NADH dehydrogenase subunit E [Escherichia coli 55989] gi|218700759|ref|YP_002408388.1| NADH dehydrogenase subunit E [Escherichia coli IAI39] gi|218705815|ref|YP_002413334.1| NADH dehydrogenase subunit E [Escherichia coli UMN026] gi|227887341|ref|ZP_04005146.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972] gi|237704759|ref|ZP_04535240.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|238901460|ref|YP_002927256.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952] gi|253772793|ref|YP_003035624.1| NADH dehydrogenase subunit E [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162294|ref|YP_003045402.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606] gi|256017559|ref|ZP_05431424.1| NADH dehydrogenase subunit E [Shigella sp. D9] gi|256022031|ref|ZP_05435896.1| NADH dehydrogenase subunit E [Escherichia sp. 4_1_40B] gi|260844872|ref|YP_003222650.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2 str. 12009] gi|260856329|ref|YP_003230220.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11 str. 11368] gi|260869008|ref|YP_003235410.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H- str. 11128] gi|293405751|ref|ZP_06649743.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412] gi|293410645|ref|ZP_06654221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354] gi|293446622|ref|ZP_06663044.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088] gi|297519442|ref|ZP_06937828.1| NADH dehydrogenase subunit E [Escherichia coli OP50] gi|298381434|ref|ZP_06991033.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302] gi|300818114|ref|ZP_07098326.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1] gi|300822156|ref|ZP_07102298.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7] gi|300896959|ref|ZP_07115440.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1] gi|300903670|ref|ZP_07121586.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1] gi|300918550|ref|ZP_07135140.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1] gi|300924544|ref|ZP_07140508.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1] gi|300931362|ref|ZP_07146693.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1] gi|300936850|ref|ZP_07151739.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1] gi|300948571|ref|ZP_07162664.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1] gi|300956455|ref|ZP_07168744.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1] gi|300981073|ref|ZP_07175345.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1] gi|300983380|ref|ZP_07176564.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1] gi|301024083|ref|ZP_07187797.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1] gi|301026955|ref|ZP_07190348.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1] gi|301049038|ref|ZP_07196023.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1] gi|301303256|ref|ZP_07209381.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1] gi|301328777|ref|ZP_07221825.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1] gi|301647618|ref|ZP_07247414.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1] gi|307138949|ref|ZP_07498305.1| NADH dehydrogenase subunit E [Escherichia coli H736] gi|307311155|ref|ZP_07590799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W] gi|309793164|ref|ZP_07687592.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7] gi|312967583|ref|ZP_07781798.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75] gi|312973456|ref|ZP_07787628.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70] gi|331642923|ref|ZP_08344058.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736] gi|331647940|ref|ZP_08349032.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605] gi|331653727|ref|ZP_08354728.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718] gi|331658367|ref|ZP_08359329.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206] gi|331663800|ref|ZP_08364710.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143] gi|331668983|ref|ZP_08369831.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271] gi|331678231|ref|ZP_08378906.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591] gi|331683956|ref|ZP_08384552.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299] gi|332278569|ref|ZP_08390982.1| NADH dehydrogenase subunit I E [Shigella sp. D9] gi|84028748|sp|P0AFD2|NUOE_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E; AltName: Full=NUO5 gi|84028749|sp|P0AFD1|NUOE_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E; AltName: Full=NUO5 gi|84028750|sp|P0AFD3|NUOE_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [Escherichia coli CFT073] gi|431019|gb|AAA03536.1| NADH dehydrogenase [Escherichia coli] gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. MG1655] gi|1799646|dbj|BAA16114.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K12 substr. W3110] gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 301] gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 2457T] gi|73856280|gb|AAZ88987.1| NADH dehydrogenase I chain E [Shigella sonnei Ss046] gi|81246174|gb|ABB66882.1| NADH dehydrogenase I chain E [Shigella boydii Sb227] gi|91073151|gb|ABE08032.1| NADH dehydrogenase I chain E [Escherichia coli UTI89] gi|110344081|gb|ABG70318.1| NADH dehydrogenase I chain E [Escherichia coli 536] gi|110615796|gb|ABF04463.1| NADH dehydrogenase I chain E [Shigella flexneri 5 str. 8401] gi|115513598|gb|ABJ01673.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1] gi|157067453|gb|ABV06708.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli HS] gi|157076974|gb|ABV16682.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E24377A] gi|169754334|gb|ACA77033.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli ATCC 8739] gi|169889737|gb|ACB03444.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12 substr. DH10B] gi|170123925|gb|EDS92856.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii TW07627] gi|170521626|gb|ACB19804.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli SMS-3-5] gi|187427811|gb|ACD07085.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii CDC 3083-94] gi|188491396|gb|EDU66499.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638] gi|190909621|gb|EDV69206.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11] gi|192931895|gb|EDV84494.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22] gi|192958502|gb|EDV88941.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019] gi|194414795|gb|EDX31066.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171] gi|194418417|gb|EDX34506.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012] gi|194424905|gb|EDX40890.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1] gi|209912992|dbj|BAG78066.1| NADH dehydrogenase I chain E [Escherichia coli SE11] gi|215265570|emb|CAS09973.1| NADH: ubiquinone oxidoreductase, chain E [Escherichia coli O127:H6 str. E2348/69] gi|218352616|emb|CAU98397.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 55989] gi|218355807|emb|CAQ88420.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii ATCC 35469] gi|218361609|emb|CAQ99201.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI1] gi|218365967|emb|CAR03711.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli S88] gi|218370745|emb|CAR18558.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI39] gi|218428009|emb|CAR08930.2| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli ED1a] gi|218432912|emb|CAR13806.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli UMN026] gi|222034041|emb|CAP76782.1| NadH-quinone oxidoreductase subunit E [Escherichia coli LF82] gi|226901125|gb|EEH87384.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835691|gb|EEJ46157.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972] gi|238861869|gb|ACR63867.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952] gi|242377918|emb|CAQ32687.1| NADH:ubiquinone oxidoreductase, chain E, subunit of soluble NADH dehydrogenase fragment and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323837|gb|ACT28439.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974195|gb|ACT39866.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606] gi|253978362|gb|ACT44032.1| NADH dehydrogenase subunit E [Escherichia coli BL21(DE3)] gi|257754978|dbj|BAI26480.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11 str. 11368] gi|257760019|dbj|BAI31516.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2 str. 12009] gi|257765364|dbj|BAI36859.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H- str. 11128] gi|260448622|gb|ACX39044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli DH1] gi|281179372|dbj|BAI55702.1| NADH dehydrogenase I chain E [Escherichia coli SE15] gi|281601726|gb|ADA74710.1| NADH-quinone oxidoreductase subunit E [Shigella flexneri 2002017] gi|284922273|emb|CBG35358.1| NADH-quinone oxidoreductase subunit E [Escherichia coli 042] gi|291323452|gb|EFE62880.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088] gi|291427959|gb|EFF00986.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412] gi|291471113|gb|EFF13597.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354] gi|294493972|gb|ADE92728.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli IHE3034] gi|298278876|gb|EFI20390.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302] gi|299879502|gb|EFI87713.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1] gi|300299147|gb|EFJ55532.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1] gi|300307686|gb|EFJ62206.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1] gi|300316725|gb|EFJ66509.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1] gi|300359227|gb|EFJ75097.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1] gi|300396739|gb|EFJ80277.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1] gi|300404326|gb|EFJ87864.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1] gi|300408546|gb|EFJ92084.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1] gi|300414285|gb|EFJ97595.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1] gi|300419262|gb|EFK02573.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1] gi|300451919|gb|EFK15539.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1] gi|300458037|gb|EFK21530.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1] gi|300460824|gb|EFK24317.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1] gi|300525286|gb|EFK46355.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7] gi|300529258|gb|EFK50320.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1] gi|300841430|gb|EFK69190.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1] gi|300844839|gb|EFK72599.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1] gi|301074245|gb|EFK89051.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1] gi|306908661|gb|EFN39158.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W] gi|307554347|gb|ADN47122.1| NADH dehydrogenase I chain E [Escherichia coli ABU 83972] gi|307626179|gb|ADN70483.1| NADH dehydrogenase subunit E [Escherichia coli UM146] gi|308123450|gb|EFO60712.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7] gi|309702597|emb|CBJ01925.1| NADH-quinone oxidoreductase subunit E [Escherichia coli ETEC H10407] gi|310332051|gb|EFP99286.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70] gi|312287780|gb|EFR15685.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75] gi|312946903|gb|ADR27730.1| NADH dehydrogenase subunit E [Escherichia coli O83:H1 str. NRG 857C] gi|313651108|gb|EFS15507.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2a str. 2457T] gi|315061577|gb|ADT75904.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli W] gi|315136919|dbj|BAJ44078.1| NADH dehydrogenase subunit E [Escherichia coli DH1] gi|315255219|gb|EFU35187.1| NADH dehydrogenase subunit E [Escherichia coli MS 85-1] gi|315285915|gb|EFU45353.1| NADH dehydrogenase subunit E [Escherichia coli MS 110-3] gi|315298116|gb|EFU57385.1| NADH dehydrogenase subunit E [Escherichia coli MS 16-3] gi|315615554|gb|EFU96186.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 3431] gi|320177167|gb|EFW52179.1| NADH-ubiquinone oxidoreductase chain E [Shigella dysenteriae CDC 74-1112] gi|320178742|gb|EFW53705.1| NADH-ubiquinone oxidoreductase chain E [Shigella boydii ATCC 9905] gi|320183380|gb|EFW58232.1| NADH-ubiquinone oxidoreductase chain E [Shigella flexneri CDC 796-83] gi|320196152|gb|EFW70776.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli WV_060327] gi|320199873|gb|EFW74462.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli EC4100B] gi|323156435|gb|EFZ42590.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli EPECa14] gi|323161619|gb|EFZ47504.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E128010] gi|323168545|gb|EFZ54225.1| NADH-quinone oxidoreductase, E subunit [Shigella sonnei 53G] gi|323171967|gb|EFZ57611.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli LT-68] gi|323176790|gb|EFZ62380.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1180] gi|323184396|gb|EFZ69772.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1357] gi|323187990|gb|EFZ73285.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli RN587/1] gi|323377843|gb|ADX50111.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli KO11] gi|323936575|gb|EGB32862.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli E1520] gi|323941018|gb|EGB37205.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli E482] gi|323944798|gb|EGB40864.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli H120] gi|323952078|gb|EGB47952.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H252] gi|323956051|gb|EGB51804.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H263] gi|323961468|gb|EGB57078.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli H489] gi|323967726|gb|EGB63138.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli M863] gi|323973010|gb|EGB68204.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli TA007] gi|323977514|gb|EGB72600.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli TW10509] gi|324006665|gb|EGB75884.1| NADH dehydrogenase subunit E [Escherichia coli MS 57-2] gi|324013175|gb|EGB82394.1| NADH dehydrogenase subunit E [Escherichia coli MS 60-1] gi|324020881|gb|EGB90100.1| NADH dehydrogenase subunit E [Escherichia coli MS 117-3] gi|324117837|gb|EGC11736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia coli E1167] gi|325496680|gb|EGC94539.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii ECD227] gi|327252555|gb|EGE64214.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli STEC_7v] gi|330912110|gb|EGH40620.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli AA86] gi|331039721|gb|EGI11941.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736] gi|331043664|gb|EGI15802.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605] gi|331048576|gb|EGI20652.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718] gi|331056615|gb|EGI28624.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206] gi|331059599|gb|EGI31576.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143] gi|331064177|gb|EGI36088.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271] gi|331074691|gb|EGI46011.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591] gi|331078908|gb|EGI50110.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299] gi|332088415|gb|EGI93533.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 5216-82] gi|332090613|gb|EGI95709.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 155-74] gi|332093637|gb|EGI98695.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 3594-74] gi|332100921|gb|EGJ04267.1| NADH dehydrogenase subunit I E [Shigella sp. D9] gi|332344066|gb|AEE57400.1| NADH oxidoreductase NuoE [Escherichia coli UMNK88] gi|332754933|gb|EGJ85298.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 4343-70] gi|332755334|gb|EGJ85698.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-671] gi|332756245|gb|EGJ86596.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2747-71] gi|332766104|gb|EGJ96314.1| nuoE [Shigella flexneri 2930-71] gi|333001429|gb|EGK20997.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri VA-6] gi|333002028|gb|EGK21594.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-218] gi|333002652|gb|EGK22212.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-272] gi|333016346|gb|EGK35677.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-304] gi|333016536|gb|EGK35866.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-227] Length = 166 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|239929610|ref|ZP_04686563.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EVI+RYP SR SA++PLL Q +EG V+R ++ A++L + V +ATFYT + Sbjct: 34 AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 92 RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TPE + ++D G+ G Sbjct: 151 YAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188 >gi|324112817|gb|EGC06793.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein [Escherichia fergusonii B253] Length = 166 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166 >gi|283832285|ref|ZP_06352026.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC 29220] gi|291071929|gb|EFE10038.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC 29220] Length = 166 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDDDTHAHLTPEGIPELLERYK 166 >gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1] Length = 255 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFY Sbjct: 25 EADAEEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEVTAVATFY 82 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + E + + DG ++ E +EC Sbjct: 83 TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLEHIECNA 141 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ T + E ++D G+ G Sbjct: 142 ACDYAPVVMVNWEFFDNQTVDSAERMVDDLRAGRTVEPTRG 182 >gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus ATCC 33331] Length = 293 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 EVI+RYP SR SA++PLL Q +EG+VSR + A+ L + V +ATFY Sbjct: 29 EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCADQLGLTTAEVTAVATFY 86 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + + + + DG ++ E +EC Sbjct: 87 TMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDRLKEHLGVGNDETTDDGKVTLEHIECNA 145 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186 >gi|332883540|gb|EGK03823.1| hypothetical protein HMPREF9456_01890 [Dysgonomonas mossii DSM 22836] Length = 174 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 2/161 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75 + SE +NE++S YP + +SA++P+L Q+ W+S ++ VA IL++ I V Sbjct: 11 NMSESLMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 70 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY+ F P+ + + C T C LRG E L+E K+ KP DG S Sbjct: 71 YEVVTFYSMFNQKPI-AKYMFEFCRTACCGLRGGENLMEYTCQKLGVKPGEITPDGMFSV 129 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 VEC GAC PM+ +G + +E+L E+++ +I+ G+ Sbjct: 130 VGVECLGACGYGPMLQLGDNYHENLNKEKIDTLIEDCKQGK 170 >gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 17/210 (8%) Query: 1 MSVRRLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRA 49 M + RL +P+ F ++ E + E+I RYP R SA++PLL Sbjct: 1 MFI-RLGPPPEEPNQFVVEGAPQTYPPEVQARLEVDAKEIIGRYPDKR--SALLPLLHLV 57 Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q ++ +++ A +E A L + V +A+FYT ++ P G V VC T C + G Sbjct: 58 QGEDSYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGG 116 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + + E + + +DGT++ + +EC AC AP+VM+ + +++ TPE E++ Sbjct: 117 DAIFEELKEHLGIGNDETTADGTVTLQHIECNAACDYAPVVMVNWEFFDNQTPESACELV 176 Query: 170 DAFSTGQGDTIRPGPQID--RISSAPAGGL 197 D+ TG G + R +S GL Sbjct: 177 DSLRTGNPKEPTRGAPLCAFRETSRILAGL 206 >gi|315292242|gb|EFU51594.1| NADH dehydrogenase subunit E [Escherichia coli MS 153-1] Length = 166 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSLVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 168 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ +++ + RYP + QSAV+ L Q + G++S ++ VA + M I V E Sbjct: 13 LNDHLREEIDDWLRRYPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYE 72 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ F+L PVG R + VC CMLRG ++++E NK+ K DG + Sbjct: 73 VASFYSMFELKPVG-RHTIAVCTNISCMLRGSDRIVEHIENKLGIKTGESTPDGKFYIKR 131 Query: 138 -VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC AC APM+ + YE LTPER++EI+D Sbjct: 132 EEECLAACCGAPMMQVDHVYYEHLTPERVDEILDGL 167 >gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + QSAV+ L AQ+++GW++ ++ VA L M I V E Sbjct: 2 LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT + L P+G + + VC PC L G + + R K+ +DG + +E Sbjct: 62 VATFYTMYNLQPIG-KYKITVCTNLPCALSGANEAVAHFREKLGIGFNETTADGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ ++++++++ S Sbjct: 121 GECMGACGDAPVLLVNNKRMCSFMSNDKIDQLLEDLSK 158 >gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase, E subunit [Flavobacterium johnsoniae UW101] gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101] Length = 176 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 2/170 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVAN 66 E + + +E +NE+IS YP + +SA++P+L Q+ W+S + VA Sbjct: 2 ERKHYKQEINMTEALIARINELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAE 61 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 IL + I V E+ TFYT F P+G + + C T+ C LRG E L++ K+ K Sbjct: 62 ILQIKPIEVYEVVTFYTMFNQKPIG-KYMFEFCQTSCCCLRGAEDLMDYTSEKLGIKMGE 120 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 DG + VEC GAC APM+ +G E LT E++++II + Sbjct: 121 TTPDGMFTIAGVECLGACGYAPMMQLGDFYKEKLTEEKIDQIIADCRDDK 170 >gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836] gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM 17836] Length = 275 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 18/210 (8%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 + SE + + E+ +RYP R SA++P+L Q EG V+ IE A Sbjct: 10 DKPVPYSTGDSKISETTIAEMRELAARYPVGR--SALLPMLHLVQSVEGRVTPEGIEACA 67 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFYT ++ PVG HV VC T C + G + + E + + Sbjct: 68 DVLGLTGAEVSAVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDLIFERLKQHLDVGND 126 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---------- 175 DG ++ E +EC AC AP++M+ + ++D+TPE +++D G Sbjct: 127 ETTEDGKITLEHIECNAACDYAPVMMVNWEFFDDMTPESATQLVDDLRDGTEVKSPRGAT 186 Query: 176 -----QGDTIRPGPQIDRISSAPAGGLTSL 200 + + + G R P GG +L Sbjct: 187 ICTWREAERVLAGFPDGRADEGPTGGKATL 216 >gi|308187601|ref|YP_003931732.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1] gi|308058111|gb|ADO10283.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1] Length = 171 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPGLLEQYQ 171 >gi|293415578|ref|ZP_06658221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185] gi|291433226|gb|EFF06205.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185] Length = 166 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 + QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HDNQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|146312471|ref|YP_001177545.1| NADH dehydrogenase subunit E [Enterobacter sp. 638] gi|145319347|gb|ABP61494.1| NADH dehydrogenase subunit E [Enterobacter sp. 638] Length = 166 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLDIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIPDLLEQYK 166 >gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus M045] gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus M045] Length = 298 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P E+I+RYP SR SA++P+L Q +EG+V+R + A +L + Sbjct: 19 PPYPDDVRARLERDAREIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMRFCAELLGLT 76 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+ ++ P G V VC T C + G + + + + DG Sbjct: 77 TAEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDG 135 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ T E + ++D G + G Sbjct: 136 KVTLEHIECNAACDFAPVVMVNWEFFDNQTVESAKRLVDELREGAEVSPTRG 187 >gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit nuoE [Escherichia coli] Length = 166 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S V + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAVEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|303238582|ref|ZP_07325116.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302593980|gb|EFL63694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 181 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 3/172 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + +P F +E + I +R A+I +L +AQE G++ R VA L Sbjct: 8 DVMKPVEREFPKEKYDELGAFIDNMETTR--GALIEILHKAQEIFGYLPRDVQLYVARKL 65 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V + +FY+ F P G + + VC T C +RG +K++E ++++ + Sbjct: 66 GIPGAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGSDKILEKFKDRLGIESNETT 124 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 D + ++V C GAC AP+VM+ Y + E ++ II+ + + I Sbjct: 125 EDSLFTIKDVRCIGACGLAPVVMVDGKVYGRVKEEDVDNIINEYRGKETKNI 176 >gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1] gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1] Length = 253 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 25/203 (12%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E A +I RYP SR SA++PLL Q ++G+++ A I A L + + V Sbjct: 27 EVTERLAADAATIIGRYPQSR--SALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVT 84 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFY+ ++ P G V VC T C + G + ++E + + P +DGT++ E Sbjct: 85 AVATFYSMYRREPTGE-YLVGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLE 143 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR--------------- 181 VEC AC AP+VM+ D +++ TP + +++D+ +G+ T Sbjct: 144 HVECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPTPSRSGALCTFRETARIL 203 Query: 182 -----PG--PQIDRISSAPAGGL 197 PG P R+ +A GL Sbjct: 204 AGLSNPGDAPDAGRVGAATLAGL 226 >gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis CDC1551A] Length = 244 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 17/210 (8%) Query: 1 MSVRRLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRA 49 M + RL +P+ F S+ + + E+I RYP R SA++PLL Sbjct: 1 MFI-RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRR--SALLPLLHLV 57 Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q ++ +++ A + A+ L + V +A+FYT ++ P G V VC T C + G Sbjct: 58 QGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGG 116 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + + + + + SDG ++ + +EC AC AP+VM+ + +++ TPE E++ Sbjct: 117 DAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELV 176 Query: 170 DAFSTGQGDTIRPG-PQID-RISSAPAGGL 197 D+ + G P R +S GL Sbjct: 177 DSLRSDTPKAPTRGAPLCGFRQTSRILAGL 206 >gi|302393030|ref|YP_003828850.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302205107|gb|ADL13785.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + ++++ Y + +IP+L QE+ G++ + ++ ++ L ++ ++ + Sbjct: 13 EEYLAPLRDILAGYKMKKK--NLIPILQAIQEEYGYLPQQVLKELSENLGVSLSKIYGVT 70 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L+P G ++VC T C +RG EK++E + ++ D + E V Sbjct: 71 TFYSQFHLNPRGE-NVIRVCMGTACHVRGGEKILEKIQEELGIDDGETTEDLKFTLESVA 129 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI DT+ LTP+++ EI+ + Sbjct: 130 CIGACGLAPVIMINDDTHGRLTPDQVPEILAEY 162 >gi|237748887|ref|ZP_04579367.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13] gi|229380249|gb|EEO30340.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13] Length = 159 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 2/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SEES ++ + ++PP++ +SA I L AQ+++GW+S I+ VAN L + I V Sbjct: 1 MLLSEESYRKIDRELEKFPPTKKRSAAIAALTVAQDEKGWLSPDVIKEVANYLGLPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A+FY+ F SPVG + + VC PC + G ++ R K+ + DG + Sbjct: 61 GEVASFYSMFNTSPVG-KYKIAVCSNLPCEMTGSDQAAAYLRQKLGIEFGETTPDGLFTL 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC + P++M+ + +T ++++ +++ Sbjct: 120 VASECMGACGDGPVIMVNNKNMHMRMTNDKIDRLLEELK 158 >gi|323141627|ref|ZP_08076509.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067] gi|322413892|gb|EFY04729.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067] Length = 169 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ ++ +Y + +IP+L Q ++ + +E +A+ + + TF Sbjct: 21 EKQRIDAILEKYAD--VKGPLIPILQEVQNLYNYLPKDVLEYIADKTGTPISEIYGVVTF 78 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ F L+P G R ++VC T C +RG + +++ N++ K H D + E V C Sbjct: 79 YSLFHLNPRG-RNVIRVCQGTACHVRGGKTILQALENQLGIKAGHTTDDLRFTLETVACI 137 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP++ I DT+ LT ++L I+ + Sbjct: 138 GACGLAPVMQINDDTHGRLTTDKLAGILARYK 169 >gi|317048936|ref|YP_004116584.1| NADH-quinone oxidoreductase subunit E [Pantoea sp. At-9b] gi|316950553|gb|ADU70028.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. At-9b] Length = 171 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +++A + P+ F SE + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQKIAIQTIDPNEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +H KP DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LHIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIATLLEQYQ 171 >gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000] gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein [Ralstonia solanacearum GMI1000] gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum CMR15] Length = 167 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLTVCTNLPCALSGGERAADYLKQKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLKA 158 >gi|157144784|ref|YP_001452103.1| NADH dehydrogenase subunit E [Citrobacter koseri ATCC BAA-895] gi|157081989|gb|ABV11667.1| hypothetical protein CKO_00511 [Citrobacter koseri ATCC BAA-895] Length = 166 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166 >gi|237732316|ref|ZP_04562797.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2] gi|226907855|gb|EEH93773.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2] Length = 166 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEGIPELLERYK 166 >gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 178 str. F0338] gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 178 str. F0338] Length = 233 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 S++ + + ++I+RYP +SA++P+L Q +G+VS I++++ ILD+ Sbjct: 1 MSYTPDVEARLRADSAQIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLP 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFYTQ++ P G V VC C + G +++ E K+ + G Sbjct: 61 RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWERVSAKVGVGSDETSESG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI----- 186 ++ E +EC AC AP+VM+ + +++ TPE +ID G+ GP + Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESALALIDDIEAGRDIHPTRGPAVAPAFK 179 Query: 187 -----------DRISSAPAGGLTSLL 201 R P+ G +LL Sbjct: 180 ENERLLAGFPDGRADEGPSAGPATLL 205 >gi|191166488|ref|ZP_03028318.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A] gi|190903448|gb|EDV63167.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A] Length = 166 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMYHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|154498759|ref|ZP_02037137.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC 29799] gi|150272149|gb|EDM99353.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC 29799] Length = 164 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 ++ + E + +VI+ + + +P+L AQE G++ ++A LD+ Sbjct: 9 PYNGTPEQEERLRQVIAEHKG--QPGSTMPVLQAAQEIFGYLPEEVQIMIAEGLDIPLSE 66 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +A+FY QF ++P G R + VC T C ++G ++ K+ +P DG S Sbjct: 67 VYGVASFYAQFSMNPKG-RYQISVCLGTACYVKGAADILAAVEKKLGIRPGSITPDGKFS 125 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++M+G D Y LTP+++ I+D + Sbjct: 126 LDACRCVGACGLAPVMMVGSDVYGRLTPDQVGPILDKY 163 >gi|313836204|gb|EFS73918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA2] gi|314927639|gb|EFS91470.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL044PA1] gi|314971362|gb|EFT15460.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA3] gi|328906299|gb|EGG26074.1| NADH dehydrogenase subunit E [Propionibacterium sp. P08] Length = 260 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 18/221 (8%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + S + E + + ++ SRYP R SA++P+L Q +G VS IE A +L Sbjct: 28 DQSDRSTNIDEHTIEEMRQIASRYPDPR--SALLPILHLVQSVDGRVSPVGIETAAEVLG 85 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + +V +ATFYT ++ P G + VC T C + G E+++ K+ K Sbjct: 86 ITTAQVSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGETTP 144 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--- 186 DG S E VEC AC AP++M+ + +++TP R EEI+DA + + G +I Sbjct: 145 DGKFSLEGVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDALARDEEVHSTRGAKITSW 204 Query: 187 ------------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 R P+ G SL K+ K D Sbjct: 205 REAERVLAGFPDGRADEGPSAGEASLRGVRLAKQNGWKAPD 245 >gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1] gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1] Length = 279 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 F E + EVI+RYP SR SA++PLL Q +EG+VSR I A +L + Sbjct: 46 DFPAEVRARLEADAREVIARYPDSR--SALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTT 103 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT ++ P G V VC T C + G + + E + + DG Sbjct: 104 AEVTAVATFYTMYRRGPSGD-YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGK 162 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ TP+ + ++D G+ G Sbjct: 163 VTLEHIECNAACDYAPVVMVNWEFFDNQTPQSAKAMVDDLLAGRPVAPTRG 213 >gi|153814129|ref|ZP_01966797.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756] gi|317499934|ref|ZP_07958170.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|331087843|ref|ZP_08336768.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848525|gb|EDK25443.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756] gi|316898651|gb|EFV20686.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|330409538|gb|EGG88979.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E+ FS ++E + +VI + A++P+L +AQ+ G++ +++++ Sbjct: 3 EKKATVPFSGTKEQEEALMKVIHELKDEK--GALMPILQKAQDIYGYLPIEVQKMISDET 60 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + ++ +ATFY+QF LSP G + + VC T C ++G + K+ Sbjct: 61 GIPMEKIYGVATFYSQFTLSPKG-KYRISVCLGTACYVKGSGDIYNALMEKLGIVGGECT 119 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++MI + Y LT + L++I+ + Sbjct: 120 PDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDLDDILAKY 163 >gi|152971213|ref|YP_001336322.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579544|ref|YP_002237327.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342] gi|238895802|ref|YP_002920538.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae NTUH-K2044] gi|262043325|ref|ZP_06016454.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934257|ref|YP_003438316.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22] gi|290508460|ref|ZP_06547831.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55] gi|330003559|ref|ZP_08304674.1| NDH-1 subunit E [Klebsiella sp. MS 92-3] gi|150956062|gb|ABR78092.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568602|gb|ACI10378.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342] gi|238548120|dbj|BAH64471.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039349|gb|EEW40491.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888986|gb|ADC57304.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22] gi|289777854|gb|EFD85851.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55] gi|328536899|gb|EGF63198.1| NDH-1 subunit E [Klebsiella sp. MS 92-3] Length = 166 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166 >gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv] gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551] gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97] gi|121639032|ref|YP_979256.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663004|ref|YP_001284527.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra] gi|148824343|ref|YP_001289097.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis F11] gi|215405147|ref|ZP_03417328.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 02_1987] gi|215413016|ref|ZP_03421717.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 94_M4241A] gi|215428606|ref|ZP_03426525.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T92] gi|215432108|ref|ZP_03430027.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|215447439|ref|ZP_03434191.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|218754929|ref|ZP_03533725.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis GM 1503] gi|219559195|ref|ZP_03538271.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T17] gi|224991524|ref|YP_002646213.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo 172] gi|253800183|ref|YP_003033184.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 1435] gi|254233768|ref|ZP_04927093.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis C] gi|254365774|ref|ZP_04981819.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis str. Haarlem] gi|254552240|ref|ZP_05142687.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188190|ref|ZP_05765664.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CPHL_A] gi|260202295|ref|ZP_05769786.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T46] gi|260206488|ref|ZP_05773979.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis K85] gi|289444713|ref|ZP_06434457.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T46] gi|289448829|ref|ZP_06438573.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis CPHL_A] gi|289555422|ref|ZP_06444632.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 605] gi|289571360|ref|ZP_06451587.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T17] gi|289575861|ref|ZP_06456088.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis K85] gi|289746958|ref|ZP_06506336.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis 02_1987] gi|289751827|ref|ZP_06511205.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T92] gi|289755268|ref|ZP_06514646.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|289759279|ref|ZP_06518657.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|289763332|ref|ZP_06522710.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis GM 1503] gi|294993128|ref|ZP_06798819.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 210] gi|297635792|ref|ZP_06953572.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN 4207] gi|297732789|ref|ZP_06961907.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN R506] gi|298526623|ref|ZP_07014032.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis 94_M4241A] gi|306777466|ref|ZP_07415803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu001] gi|306782192|ref|ZP_07420529.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu002] gi|306786012|ref|ZP_07424334.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu003] gi|306790377|ref|ZP_07428699.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu004] gi|306799102|ref|ZP_07437404.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu006] gi|306804946|ref|ZP_07441614.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu008] gi|306809135|ref|ZP_07445803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu007] gi|306969237|ref|ZP_07481898.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu009] gi|306973584|ref|ZP_07486245.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu010] gi|307081293|ref|ZP_07490463.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu011] gi|307085895|ref|ZP_07495008.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu012] gi|313660122|ref|ZP_07817002.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN V2475] gi|54037921|sp|P65574|NUOE_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|54041672|sp|P65573|NUOE_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|1781219|emb|CAB06290.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN E) [Mycobacterium tuberculosis H37Rv] gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subunit [Mycobacterium tuberculosis CDC1551] gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN E) [Mycobacterium bovis AF2122/97] gi|121494680|emb|CAL73161.1| Probable NADH dehydrogenase I (chain E) nuoE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599297|gb|EAY58401.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis C] gi|134151287|gb|EBA43332.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis str. Haarlem] gi|148507156|gb|ABQ74965.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra] gi|148722870|gb|ABR07495.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis F11] gi|224774639|dbj|BAH27445.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo 172] gi|253321686|gb|ACT26289.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 1435] gi|289417632|gb|EFD14872.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T46] gi|289421787|gb|EFD18988.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis CPHL_A] gi|289440054|gb|EFD22547.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 605] gi|289540292|gb|EFD44870.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis K85] gi|289545114|gb|EFD48762.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T17] gi|289687486|gb|EFD54974.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis 02_1987] gi|289692414|gb|EFD59843.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis T92] gi|289695855|gb|EFD63284.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054] gi|289710838|gb|EFD74854.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis GM 1503] gi|289714843|gb|EFD78855.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85] gi|298496417|gb|EFI31711.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase chain E) [Mycobacterium tuberculosis 94_M4241A] gi|308214178|gb|EFO73577.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu001] gi|308324953|gb|EFP13804.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu002] gi|308329369|gb|EFP18220.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu003] gi|308333198|gb|EFP22049.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu004] gi|308340529|gb|EFP29380.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu006] gi|308344469|gb|EFP33320.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu007] gi|308348465|gb|EFP37316.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu008] gi|308353095|gb|EFP41946.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu009] gi|308357068|gb|EFP45919.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu010] gi|308361022|gb|EFP49873.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu011] gi|308364630|gb|EFP53481.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis SUMu012] gi|326902627|gb|EGE49560.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis W-148] gi|328459920|gb|AEB05343.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN 4207] Length = 252 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P+ F S+ + + E+I RYP R SA++PLL Q ++ Sbjct: 12 RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRR--SALLPLLHLVQGED 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A + A+ L + V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + SDG ++ + +EC AC AP+VM+ + +++ TPE E++D+ Sbjct: 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188 Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197 + G P R +S GL Sbjct: 189 SDTPKAPTRGAPLCGFRQTSRILAGL 214 >gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000] gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000] Length = 286 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 EVI+RYP SR SA++PLL Q +EG V+R + A++L + V +ATFY+ + Sbjct: 34 AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAEVTAVATFYSMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 92 RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TPE + ++D G+ G Sbjct: 151 FAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188 >gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74] gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74] Length = 286 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 E+ISRYP +R SA++PLL Q +EG V+R + A L + V +ATFY Sbjct: 25 EADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFY 82 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + E + + DG ++ E +EC Sbjct: 83 TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLEHIECNA 141 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 142 ACDFAPVVMVNWEFFDNQTPESAVRLVDELRAGREVEPTRG 182 >gi|158319327|ref|YP_001511834.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158139526|gb|ABW17838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 170 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 3/162 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 + S + + ++S+Y + ++I +L QE ++ A+ ++ + + Sbjct: 12 AMEISAQDEDKLKSILSKYEG--KKGSLISILQDVQEYYNYLPMDALNYISVETGIKPAK 69 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFYTQF+L PVG + + +C T C + G + + E + ++H + D + Sbjct: 70 IHGVATFYTQFRLKPVGEK-LIMLCQGTACHVNGSKAVEEAIKEELHIQDGETTEDNLFT 128 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 V C G C +P++MI DTY +LTPE+++ II + Q Sbjct: 129 LINVACLGCCSLSPVMMINDDTYGNLTPEKVKSIIREIKSAQ 170 >gi|253689145|ref|YP_003018335.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755723|gb|ACT13799.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 171 Score = 211 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M ++E ++ F S+ + Y +R +A I L Q++ GWV Sbjct: 1 MPDHNISERNISDNNVFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + K Sbjct: 59 AINAIADVLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERK 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + KP DG + C G C P +MI DT+ +TPE +E +++ + Sbjct: 118 LSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQYQ 171 >gi|329944206|ref|ZP_08292465.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str. F0386] gi|328530936|gb|EGF57792.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str. F0386] Length = 256 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 8/180 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +I+RYP + +SA+IP+L Q +G+VS A I + A L + V +ATFY+QF Sbjct: 48 IERIIARYPAGKERSALIPMLHLFQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P GT HV VC C + G +++ + DGT+S E +EC AC Sbjct: 108 RRHPAGT-YHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERIECNAACD 166 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198 AP+VM+ + +++ TP+ +I A G+ GP + +R+ + G T Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226 >gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083] gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083] Length = 293 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E+I+RYP SR SA++PLL Q +EG V+R + A++L++ V +ATFYT + Sbjct: 34 AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + + + DG ++ E +EC AC Sbjct: 92 RRKPSGD-YQVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TP + ++D G+ G Sbjct: 151 FAPVVMVNWEFFDNQTPATAKRLVDDLRAGRPVEPTRG 188 >gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J] gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J] Length = 167 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I + Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158 >gi|332669453|ref|YP_004452461.1| NADH-quinone oxidoreductase subunit E [Cellulomonas fimi ATCC 484] gi|332338491|gb|AEE45074.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas fimi ATCC 484] Length = 308 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 9/189 (4%) Query: 1 MSVRRLAEEEFQPSS--FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEG 54 MSV + ++ +F EE+ ++ ++ +RYP R SA++PLL Q ++G Sbjct: 1 MSVEEIGGARVPGATHRTAFDEETRARLSADAAQIKARYPQER--SALLPLLHLVQSEDG 58 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 +VS I A L + V +ATFYTQ++ P G V VC T C + G + + E Sbjct: 59 YVSPRGIAFCAAELGLTTAEVSAVATFYTQYKRHPNGD-YTVGVCTNTLCAVMGGDAIWE 117 Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + + +DG+++ E VEC AC AP+VM+ + +++ TP+ E++DA Sbjct: 118 ELSDHLGVGHDETTADGSITLERVECNAACDYAPVVMVNWEFFDNQTPDSAREVVDALRQ 177 Query: 175 GQGDTIRPG 183 G G Sbjct: 178 GAPVAPTRG 186 >gi|188584738|ref|YP_001916283.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349425|gb|ACB83695.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 162 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ + E++++Y + A+I L + QE G++ ++ VA DM +V +A Sbjct: 12 KKEEQQLEEILAQYKNEK--GALITALQKVQEFYGYLPEEGMQKVAEAFDMPESKVFGVA 69 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G ++VC T C +RG EK++ +++ +P D + E V Sbjct: 70 TFYAQFHLQPRGEW-VIRVCTGTACHVRGAEKIMNKLIEELNIEPGETTEDLKFTLEPVA 128 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C AP++M+ +T+ L P+++ EI+D + Sbjct: 129 CIGCCGLAPVIMVNDNTHGRLVPDQIPEILDKYK 162 >gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum CFBP2957] gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum CFBP2957] Length = 167 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158 >gi|167761223|ref|ZP_02433350.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704] gi|167660889|gb|EDS05019.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704] Length = 164 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 F+ ++E + EVI + +++P+L RAQ+ G++ ++++N + Sbjct: 6 STVQFNGTKEQEKELLEVIHELKDEK--GSLMPILQRAQDIYGYLPIEVQKIISNETGIP 63 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY+QF L+P G R + VC T C ++G + K+ DG Sbjct: 64 LEKIYGVVTFYSQFNLNPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDG 122 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + C GAC AP++M+ + Y LT + +++I+ + Sbjct: 123 KFSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163 >gi|50843382|ref|YP_056609.1| NADH dehydrogenase subunit E [Propionibacterium acnes KPA171202] gi|289425625|ref|ZP_06427397.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK187] gi|289426980|ref|ZP_06428699.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes J165] gi|295131456|ref|YP_003582119.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK137] gi|50840984|gb|AAT83651.1| NADH dehydrogenase I chain E [Propionibacterium acnes KPA171202] gi|289153926|gb|EFD02619.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK187] gi|289159802|gb|EFD07987.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes J165] gi|291375165|gb|ADD99019.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes SK137] gi|313763288|gb|EFS34652.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA1] gi|313773334|gb|EFS39300.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL074PA1] gi|313793604|gb|EFS41644.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA1] gi|313802885|gb|EFS44098.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA2] gi|313806331|gb|EFS44847.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA2] gi|313810763|gb|EFS48477.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA1] gi|313814972|gb|EFS52686.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA1] gi|313819442|gb|EFS57156.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA2] gi|313821248|gb|EFS58962.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA1] gi|313822297|gb|EFS60011.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA2] gi|313826145|gb|EFS63859.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA1] gi|313829366|gb|EFS67080.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA2] gi|313831074|gb|EFS68788.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL007PA1] gi|313833204|gb|EFS70918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL056PA1] gi|313838153|gb|EFS75867.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL086PA1] gi|314916742|gb|EFS80573.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA4] gi|314919132|gb|EFS82963.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA1] gi|314921212|gb|EFS85043.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA3] gi|314925994|gb|EFS89825.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA3] gi|314930360|gb|EFS94191.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL067PA1] gi|314956143|gb|EFT00539.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA1] gi|314959676|gb|EFT03778.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA1] gi|314962250|gb|EFT06351.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA2] gi|314963236|gb|EFT07336.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA1] gi|314969779|gb|EFT13877.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA1] gi|314973942|gb|EFT18038.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA1] gi|314976870|gb|EFT20965.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL045PA1] gi|314979335|gb|EFT23429.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA2] gi|314984992|gb|EFT29084.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA1] gi|314986333|gb|EFT30425.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA2] gi|314988570|gb|EFT32661.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA3] gi|315079687|gb|EFT51675.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA2] gi|315081015|gb|EFT52991.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL078PA1] gi|315083922|gb|EFT55898.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA2] gi|315085059|gb|EFT57035.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA3] gi|315089488|gb|EFT61464.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA1] gi|315097693|gb|EFT69669.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL038PA1] gi|315098100|gb|EFT70076.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA2] gi|315102682|gb|EFT74658.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA1] gi|315107938|gb|EFT79914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA1] gi|315108824|gb|EFT80800.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA2] gi|327325713|gb|EGE67510.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL096PA3] gi|327330839|gb|EGE72584.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL096PA2] gi|327442868|gb|EGE89522.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA2] gi|327445260|gb|EGE91914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA1] gi|327447754|gb|EGE94408.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA2] gi|327451635|gb|EGE98289.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA3] gi|327452288|gb|EGE98942.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA2] gi|327452505|gb|EGE99159.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL092PA1] gi|328752121|gb|EGF65737.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA2] gi|328755065|gb|EGF68681.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL020PA1] gi|328757013|gb|EGF70629.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA1] gi|328761549|gb|EGF75067.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL099PA1] gi|332676325|gb|AEE73141.1| NADH-quinone oxidoreductase subunit E [Propionibacterium acnes 266] Length = 261 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186 E VEC AC AP++M+ + +++TP R EEI+D+ + + G +I Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAER 209 Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 R P+ G SL K+ K D Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQSGWKAPD 245 >gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum PSI07] gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum PSI07] Length = 167 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G ++ + + K+ +DGT + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGDRAADYLKQKLGIGFNETTADGTFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I + Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158 >gi|239627942|ref|ZP_04670973.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47_FAA] gi|239518088|gb|EEQ57954.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47FAA] Length = 164 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q F+ + E + VI++ A++P++ +AQ+ G++ ++++ + Sbjct: 4 KKQTVPFAGTPEQEAELKSVIAQLKD--QPGALMPVMQKAQDIYGYLPIEVQTMISDEMG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + +V ++TFY QF L P G + V VC T C ++G ++ + + Sbjct: 62 IPLEKVYGVSTFYAQFALQPKG-KYKVSVCLGTACYVKGSGEIFSKLEELLGITNGECTA 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG S + C GAC AP++MI + Y LT + + I+ ++ Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKYN 164 >gi|291298802|ref|YP_003510080.1| NADH-quinone oxidoreductase E subunit [Stackebrandtia nassauensis DSM 44728] gi|290568022|gb|ADD40987.1| NADH-quinone oxidoreductase, E subunit [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +++EE E++ RYP + +SA++P+L Q Q+G++++ I A ++ + +V Sbjct: 1 MAYTEEFRAQAREIMERYPEGKQRSALLPMLHLVQSQDGYITQDGIAFCAEMIGITKAQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ++TFYT ++ P G V VC T C + G +K+ + R + DG ++ Sbjct: 61 AAVSTFYTMYKREPTGD-YLVSVCTNTLCDVMGGQKVFDALREYLGVDHDETTGDGKITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + ++ P+ ++ G+ T G Sbjct: 120 EHAECLAACDYAPVMTVNYEFFDKTNPDEAVQLAKNLRNGERPTPTRG 167 >gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 174 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 2/172 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E Q + +E + +++YPP + QSAV+ L Q+++GWVS + V+A +L Sbjct: 4 ESNQAAGSPVTEATRARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIAEVL 63 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 M I V E+ TFY + P+G + + VC PC LR +K + K+ Sbjct: 64 GMPQIAVHEVTTFYNMYNQQPLG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGIAMGETT 122 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179 DG + ++ EC GAC +AP++++ T + E+L++++D +G Sbjct: 123 PDGLFTLQQCECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEGQA 174 >gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila DSM 44928] gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila DSM 44928] Length = 228 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++RYP + SA++PLL Q +EG+VS A IE A L ++ V ++TFYT + Sbjct: 17 ADAIVARYP--QSGSALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMY 74 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG HV VC T C + G + + + + DG ++ E +EC AC Sbjct: 75 KRRPVGD-YHVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHIECNAACD 133 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 AP++ + + +D+ P++ ++D G+ GP Sbjct: 134 FAPVMTVNWEFLDDMNPDKAVRVVDELRAGKEVHSTRGP 172 >gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D] gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp. 5_7_47FAA] gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D] gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp. 5_7_47FAA] Length = 167 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I + Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158 >gi|311278758|ref|YP_003940989.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1] gi|308747953|gb|ADO47705.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1] Length = 166 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEQKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + ++++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166 >gi|16761250|ref|NP_456867.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765652|ref|NP_461267.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141054|ref|NP_804396.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412778|ref|YP_149853.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180895|ref|YP_217312.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502530|ref|YP_001569642.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161612947|ref|YP_001586912.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549676|ref|ZP_02343435.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994673|ref|ZP_02575764.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229694|ref|ZP_02654752.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237342|ref|ZP_02662400.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242443|ref|ZP_02667375.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261659|ref|ZP_02683632.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465972|ref|ZP_02699842.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817945|ref|ZP_02829945.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444429|ref|YP_002041585.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449482|ref|YP_002046378.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470009|ref|ZP_03075993.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736216|ref|YP_002115394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251007|ref|YP_002147283.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265747|ref|ZP_03165821.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361712|ref|YP_002141348.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246025|ref|YP_002216395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387224|ref|ZP_03213836.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929141|ref|ZP_03220284.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353440|ref|YP_002227241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857743|ref|YP_002244394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052941|ref|ZP_03345819.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417787|ref|ZP_03350899.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427013|ref|ZP_03359763.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581186|ref|ZP_03363012.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612346|ref|ZP_03370172.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647301|ref|ZP_03377354.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853109|ref|ZP_03382641.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583189|ref|YP_002636987.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912396|ref|ZP_04656233.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829697|ref|ZP_06547238.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392848|sp|P0A1Y8|NUOE_SALTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|60392849|sp|P0A1Y9|NUOE_SALTI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhi] gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127035|gb|AAV76541.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128528|gb|AAX66231.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160863877|gb|ABX20500.1| hypothetical protein SARI_00574 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161362311|gb|ABX66079.1| hypothetical protein SPAB_00653 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403092|gb|ACF63314.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407786|gb|ACF68005.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456373|gb|EDX45212.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711718|gb|ACF90939.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631138|gb|EDX49698.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093188|emb|CAR58632.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214710|gb|ACH52107.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244002|gb|EDY26622.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289635|gb|EDY28998.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940541|gb|ACH77874.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604322|gb|EDZ02867.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321685|gb|EDZ06884.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273221|emb|CAR38184.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325189|gb|EDZ13028.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327492|gb|EDZ14256.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335581|gb|EDZ22345.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338362|gb|EDZ25126.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345101|gb|EDZ31865.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349325|gb|EDZ35956.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709546|emb|CAR33891.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467716|gb|ACN45546.1| ATP synthase subunit E [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247531|emb|CBG25358.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994420|gb|ACY89305.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158883|emb|CBW18396.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913316|dbj|BAJ37290.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086759|emb|CBY96531.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222974|gb|EFX48045.1| NADH-ubiquinone oxidoreductase chain E [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617071|gb|EFY13977.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617623|gb|EFY14522.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624747|gb|EFY21576.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630296|gb|EFY27066.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634477|gb|EFY31210.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639187|gb|EFY35879.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640050|gb|EFY36717.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645729|gb|EFY42253.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651505|gb|EFY47880.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656064|gb|EFY52363.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659417|gb|EFY55664.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665877|gb|EFY62060.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669883|gb|EFY66024.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673869|gb|EFY69966.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678627|gb|EFY74683.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683577|gb|EFY79591.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687653|gb|EFY83623.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715374|gb|EFZ06945.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130656|gb|ADX18086.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193513|gb|EFZ78718.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198418|gb|EFZ83520.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201932|gb|EFZ86994.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208530|gb|EFZ93469.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209761|gb|EFZ94685.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218297|gb|EGA03007.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222946|gb|EGA07295.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227381|gb|EGA11546.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232292|gb|EGA16395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235674|gb|EGA19758.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241165|gb|EGA25201.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244907|gb|EGA28909.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250026|gb|EGA33920.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251638|gb|EGA35506.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254949|gb|EGA38740.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260329|gb|EGA43948.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268095|gb|EGA51572.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270812|gb|EGA54250.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624146|gb|EGE30491.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628532|gb|EGE34875.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989258|gb|AEF08241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 166 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + ++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166 >gi|242399494|ref|YP_002994919.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus MM 739] gi|242265888|gb|ACS90570.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus MM 739] Length = 154 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E I Y P+ S++IPLL + QE G++ + A+E ++ L + RV +ATFY QF+ Sbjct: 6 EYIYHYEPN--PSSLIPLLQKTQETFGYLPKEALEEISRYLKVPLSRVYGVATFYAQFRF 63 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P+G + +++C T C + G + + R ++ + DG ++ E V C G C A Sbjct: 64 EPLG-KYVIKICHGTACHVNGAVNISQAIREEVGIEEGQTTVDGLITLERVACLGCCSLA 122 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P++MI + Y LTP+++ +II G+ Sbjct: 123 PVIMINEKVYGKLTPDKVRKIIRNLKEGK 151 >gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212] gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212] Length = 158 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ I++YP R QSAV+ L AQE++GW++ + VA L M I V E Sbjct: 2 LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L P G + + +C PC L G + + K+ + DG + +E Sbjct: 62 VATFYNMYNLEPTG-KYKITICTNLPCALSGSNDSAKYIKQKLGIEFNQTTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ ++ E +++++ Sbjct: 121 GECFGACGDAPVLLVNNKRMCSFMSEEMIDKLLREL 156 >gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 157 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + ES ++ I++YP + QSAV+ L AQE++GW+S AIE VA L MA I E Sbjct: 2 LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG + V VC PCML G E + K+ DG ++ +E Sbjct: 62 VASFYNMYDLKPVG-KYKVSVCTNLPCMLTGGVDAGEYLKQKLGIDYNETTPDGLITLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ + PE++++++ Sbjct: 121 GECMGACGDAPVMIVNNRRMCSWMNPEQIDKLLAELK 157 >gi|22125528|ref|NP_668951.1| NADH dehydrogenase subunit E [Yersinia pestis KIM 10] gi|45442152|ref|NP_993691.1| NADH dehydrogenase subunit E [Yersinia pestis biovar Microtus str. 91001] gi|108808039|ref|YP_651955.1| NADH dehydrogenase subunit E [Yersinia pestis Antiqua] gi|108812309|ref|YP_648076.1| NADH dehydrogenase subunit E [Yersinia pestis Nepal516] gi|145599242|ref|YP_001163318.1| NADH dehydrogenase subunit E [Yersinia pestis Pestoides F] gi|229838094|ref|ZP_04458253.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895293|ref|ZP_04510467.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides A] gi|229898654|ref|ZP_04513799.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. India 195] gi|229902653|ref|ZP_04517770.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516] gi|270490165|ref|ZP_06207239.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27] gi|294504366|ref|YP_003568428.1| ATP synthase subunit E [Yersinia pestis Z176003] gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [Yersinia pestis KIM 10] gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [Yersinia pestis biovar Microtus str. 91001] gi|108775957|gb|ABG18476.1| NADH dehydrogenase I chain E [Yersinia pestis Nepal516] gi|108779952|gb|ABG14010.1| NADH dehydrogenase I chain E [Yersinia pestis Antiqua] gi|145210938|gb|ABP40345.1| NADH dehydrogenase I chain E [Yersinia pestis Pestoides F] gi|229680100|gb|EEO76199.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516] gi|229688202|gb|EEO80273.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. India 195] gi|229694460|gb|EEO84507.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701779|gb|EEO89804.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides A] gi|262362645|gb|ACY59366.1| ATP synthase subunit E [Yersinia pestis D106004] gi|262366274|gb|ACY62831.1| ATP synthase subunit E [Yersinia pestis D182038] gi|270338669|gb|EFA49446.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27] gi|294354825|gb|ADE65166.1| ATP synthase subunit E [Yersinia pestis Z176003] gi|320014610|gb|ADV98181.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 187 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186 >gi|310768162|gb|ADP13112.1| NADH dehydrogenase subunit E [Erwinia sp. Ejp617] Length = 171 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLGIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171 >gi|307328625|ref|ZP_07607798.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger Tu 4113] gi|306885737|gb|EFN16750.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger Tu 4113] Length = 276 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 EVI+RYP SR SA++PLL Q +EG V+R + A +L + V +ATFY Sbjct: 25 EADAREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEVTAVATFY 82 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ P G V VC T C + G + + E ++ + DG ++ E +EC Sbjct: 83 TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLEHIECNA 141 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AC AP+VM+ + +++ T E + ++D G+ G Sbjct: 142 ACDYAPVVMVNWEFFDNQTIESAKGLVDDLRAGRTVEPTRG 182 >gi|282855270|ref|ZP_06264602.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139] gi|282581858|gb|EFB87243.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139] gi|314923990|gb|EFS87821.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL001PA1] gi|314965054|gb|EFT09153.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA2] gi|314983074|gb|EFT27166.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA3] gi|315090607|gb|EFT62583.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA4] gi|315093906|gb|EFT65882.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL060PA1] gi|315104125|gb|EFT76101.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA2] gi|327325782|gb|EGE67574.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL103PA1] Length = 261 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186 E VEC AC AP++M+ + +++TP R EEI+D+ + + G +I Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAER 209 Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 R P+ G SL K+ K D Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245 >gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551] gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551] Length = 167 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + QSAV+ L AQ ++GWVS ++ VA L+M + V E Sbjct: 2 LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ + + K+ +DG + +E Sbjct: 62 VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKQKLGIGFNETTADGNFTLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ E+L+ +I Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158 >gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 180 str. F0310] gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon 180 str. F0310] Length = 235 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 21/206 (10%) Query: 16 FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 S++ ++ + ++I+RYP +SA++P+L Q +G+VS I+ ++ L++ Sbjct: 1 MSYTPDTLARLQADAAQIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELP 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFYTQ++ P G V VC C + G +++ E +K+ ++DG Sbjct: 61 RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWEKVSDKVGVGSDETSADG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184 ++ E +EC AC AP+VM+ + +++ TPE +ID G+ GP Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESAAAMIDDIQEGRDIHPTRGPVVAPTFK 179 Query: 185 QIDRISS---------APAGGLTSLL 201 + +R+ + P+ G ++LL Sbjct: 180 ENERVLAGFLDGHEDEGPSAGQSTLL 205 >gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus] Length = 155 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 22 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 81 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L + +RV E+ATFYT + PVG + H+QVC TTPCMLR + ++E + K+ Sbjct: 82 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 140 Query: 121 HQKPLHRNSDGTLSW 135 K D + Sbjct: 141 GIKVGETTPDKLFTL 155 >gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649] gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649] Length = 417 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V+++YP + +SA++PLL Q +G+V+ I+ A +L+++ V +ATFYT Sbjct: 33 ADAELVVAKYP--QKRSALLPLLHLVQSVDGYVTGRGIDFCAEVLELSRAEVSGVATFYT 90 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 Q++ P G V VC T C + G +++ + + DG ++ E +EC A Sbjct: 91 QYKRHPNGE-YTVGVCTNTLCAIMGGDEIWDSVSEHLGIGHDETTDDGKVTLERIECNAA 149 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 C AP+VM + +++ TPE +++D G GP Sbjct: 150 CDYAPVVMANWEFFDNQTPESTNQLVDDLRAGTPVKPTRGPNS 192 >gi|239943480|ref|ZP_04695417.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379] gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998] Length = 279 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 3/171 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P EV++RYP SR SA++PLL Q +EG+VSR I A LD+ Sbjct: 8 PYPAEVRARLDADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGIAFCAETLDLTT 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V ++TFY+ ++ P G V VC T C + G + + + + + DG Sbjct: 66 AEVTAVSTFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ TPE +++D G+ G Sbjct: 125 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESATQLVDDLIAGRTVEPTRG 175 >gi|313813678|gb|EFS51392.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA1] gi|327333126|gb|EGE74853.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes HL097PA1] Length = 261 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S + E + ++++ SRYP SR SA++P+L Q +G +S IE A +L + + Sbjct: 33 STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFYT ++ P G + VC T C + G E+++ K+ K DG S Sbjct: 91 VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186 E VEC AC AP++M+ + +++TP R EEI+D+ + + G +I Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWCEAER 209 Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 R P+ G SL K+ K D Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245 >gi|156933125|ref|YP_001437041.1| NADH dehydrogenase subunit E [Cronobacter sakazakii ATCC BAA-894] gi|156531379|gb|ABU76205.1| hypothetical protein ESA_00935 [Cronobacter sakazakii ATCC BAA-894] Length = 166 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + + KP Sbjct: 60 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMINEDTHSYLTPEGIPELLEQYK 166 >gi|149365542|ref|ZP_01887577.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125] gi|218929638|ref|YP_002347513.1| NADH dehydrogenase subunit E [Yersinia pestis CO92] gi|115348249|emb|CAL21177.1| NADH dehydrogenase I chain E [Yersinia pestis CO92] gi|149291955|gb|EDM42029.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125] Length = 172 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 9 AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 66 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 67 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 125 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 171 >gi|167750761|ref|ZP_02422888.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702] gi|167656196|gb|EDS00326.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702] gi|291557754|emb|CBL34871.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum V10Sc8a] Length = 166 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 +E F+ + E + E+I + Q A++P+L +AQE G++ ++A + Sbjct: 4 KEKNTVPFNGTPEQEKALREMIGNHKG--QQGALMPVLQQAQEIYGYLPIEVQSIIAEEM 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + +V ++TFY+QF L P G + + VC T C ++G + K+ Sbjct: 62 GIPLEKVYGVSTFYSQFSLYPKG-KYKISVCLGTACYVKGSGDIFAKLSEKLGISDGKCT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 DG S + C GAC AP++ + D Y LT + ++ I+ ++ Sbjct: 121 QDGIFSLDACRCIGACGLAPVMTVNDDVYGKLTVDEIDGILAKYTE 166 >gi|210616164|ref|ZP_03290967.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787] gi|210149926|gb|EEA80935.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787] Length = 184 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F ++E + +VI+ + A++P+L +AQE G++ +++N + + Sbjct: 29 PFHGTKEQEEALLQVIAELKDDK--GALMPILQKAQEIYGYLPIEVQTMISNETKIPLEK 86 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFY+QF L+P G R + VC T C ++G + K+ DG S Sbjct: 87 IYGVATFYSQFTLNPKG-RYRISVCLGTACYVKGSGDIYNYLMEKLGIVGGECTPDGKFS 145 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++M+ D Y LT + +++I+ + Sbjct: 146 LDACRCVGACGLAPVMMVNDDVYGRLTVDDIDDILAKY 183 >gi|225405645|ref|ZP_03760834.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme DSM 15981] gi|225042839|gb|EEG53085.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme DSM 15981] Length = 164 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q F+ + E + VI+ +++P++ +AQ+ G++ ++++ + Sbjct: 4 KKQTVPFAGTPEQEAQLKAVIAELKD--QPGSLMPVMQKAQDIYGYLPIEVQTMISDEMG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + +V ++TFY QF L P G + + VC T C ++G ++ + + Sbjct: 62 IPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFSKLEELLGITNGECTA 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG S + C GAC AP++MI + Y LT + + I+ ++ Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDVPGILAKYN 164 >gi|217966956|ref|YP_002352462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217336055|gb|ACK41848.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 161 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + + V E++ ++ + +I +L+ Q++ ++ I + LD+ ++ +A Sbjct: 4 KRNFTKVEEILKKH--EYRKDNLIKILLDIQKEYRYIPEDVINYIGVALDIPPAKIYGVA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G LI + +++ P D S ++V Sbjct: 62 TFYAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVG 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C GAC AP+++I ++ Y +LTPE+++EI+ + Sbjct: 121 CLGACALAPVMVINEEVYGNLTPEKVKEILKNLKERE 157 >gi|306814604|ref|ZP_07448766.1| NADH dehydrogenase subunit E [Escherichia coli NC101] gi|305851998|gb|EFM52450.1| NADH dehydrogenase subunit E [Escherichia coli NC101] Length = 166 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELRAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|269794077|ref|YP_003313532.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542] gi|269096262|gb|ACZ20698.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542] Length = 319 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56 MS + PS + E + + ++++ RYP +R SA++P+L Q ++G+V Sbjct: 1 MSTDAQHQHPTAPSGTGYDEVTLARLTADAHQIVGRYPQAR--SALLPMLHLVQSEDGYV 58 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 SR+ I A +LD+ V +ATFYTQ++ P GT V VC T C + G +++ + Sbjct: 59 SRSGITFCAEVLDLTPAEVSAVATFYTQYKRRPNGT-YTVGVCTNTLCAIMGGDEIFDEL 117 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + DG ++ E VEC AC AP++M+ + ++D TP ++D G+ Sbjct: 118 SEHLGIGHDETTEDGAVTLERVECNAACDYAPVMMVNWEFFDDQTPASARGVVDDLRFGK 177 Query: 177 GDTIRPG 183 G Sbjct: 178 DVVPTRG 184 >gi|300717648|ref|YP_003742451.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661] gi|299063484|emb|CAX60604.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661] Length = 171 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E + + +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIEDNNAFVLSTLERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + + Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEDN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIVNLLEQYQ 171 >gi|134301121|ref|YP_001114617.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134053821|gb|ABO51792.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] Length = 177 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + +P F +E + I+ ++ A+I +L +AQ G++ R +A L Sbjct: 8 DVMEPVEQEFPKEKYDELESFINSLETTK--GALIEILHKAQHIFGYLPRDVQLFIARKL 65 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V + +FY+ F P G + + VC T C +RG +K++E + ++ + Sbjct: 66 GIPGAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGADKIVEKFKERLGIESNETT 124 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 DG + ++V C GAC AP+VM+ Y + E +++II+ + Sbjct: 125 EDGLFTIKDVRCIGACGLAPVVMVDDKVYGRVKVEDVDDIINIYRR 170 >gi|242239965|ref|YP_002988146.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703] gi|242132022|gb|ACS86324.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703] Length = 176 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 9/179 (5%) Query: 1 MSVRRLAEE----EFQPS--SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG 54 M +E + QP+ +F S+ + Y +R +A I L Q+Q G Sbjct: 1 MHDHNNTQEPIDAQGQPAGEAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKQRG 58 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 WV AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 59 WVPDGAITAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQA 117 Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 K++ KP DG + C G C P +M+ +DTY L P+ L+ +++ + Sbjct: 118 ALERKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMVDEDTYTRLKPDDLDSLLEQYQ 176 >gi|311744396|ref|ZP_07718198.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM 15272] gi|311312362|gb|EFQ82277.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM 15272] Length = 262 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 3/167 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +++ + E+ RYP +R S ++P+L Q +G V+ IE A IL ++ V Sbjct: 3 TLDDQTVGELREIAGRYPEAR--SGLLPMLHLVQSVQGHVTTEGIETCAEILGLSPAEVS 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFYT ++ P+GT V VC T C + G + ++E + + +DG ++ E Sbjct: 61 GVATFYTMYKRRPMGTHH-VGVCTNTLCAVMGGDAILERLQEHLDVANDETTADGAVTLE 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 +EC AC AP++M+ + ++ TPE +++D G+ G Sbjct: 120 HLECNAACDFAPVMMVNWEFFDHQTPESAVDLVDRLRAGEVVQATRG 166 >gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. SIP3-4] gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688] gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. SIP3-4] gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688] Length = 157 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ +++YP R Q+AV+ L AQ+++GW+S+ + VA L + I LE Sbjct: 2 LSQESLAKIDRELTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY ++L PVG + VC CMLR + +++ + ++ DG + +E Sbjct: 62 VASFYNMYELEPVGQ-YKITVCTNISCMLRDSDVIVDHLQERLGIGFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC G C AP+ I E LT E+++ I++ Sbjct: 121 GECMGCCGGAPLFHINNKRMCEFLTKEKVDAILEELK 157 >gi|237809383|ref|YP_002893823.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187] gi|237501644|gb|ACQ94237.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187] Length = 166 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 ++Q F+ S + + Y R +A I L Q++ GWV AI +A++L Sbjct: 6 QYQNEPFALSASELAAIQHEMHHYEDPR--AATIEALKLVQKERGWVPDGAIYAIADVLG 63 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + V +ATFY+Q PVG R ++ C + C + G + + + K+ +P + Sbjct: 64 IPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCFINGYQTIQQALEEKLGIRPGQTTA 122 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D + V C G C P +MI DT+ L+ + L+E+++ + Sbjct: 123 DNRFTLLPVCCLGNCDKGPSMMIDDDTHSHLSVDNLDELLEQY 165 >gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680] gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces avermitilis MA-4680] Length = 287 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+I+RYP SR SA++PLL Q +EG V+R ++ A+IL + V +ATFYT ++ Sbjct: 35 REIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMQFCADILGLTTAEVTAVATFYTMYR 92 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G V VC T C + G + + ++ + DG ++ E +EC AC Sbjct: 93 RRPSGD-YQVGVCTNTLCAVMGGDAIFSALQDHLGVGNGETTDDGKVTLEHIECNAACDF 151 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ T + ++D G G Sbjct: 152 APVVMVNWEFFDNQTVASAKRLVDDLRAGAPVEPTRG 188 >gi|296130547|ref|YP_003637797.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM 20109] gi|296022362|gb|ADG75598.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM 20109] Length = 294 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 E+++RYP +R SA++P+L Q ++G+VS I A++L ++ V +ATFYT Sbjct: 36 ADAQEIVARYPQAR--SALLPMLHLVQSEDGYVSPRGIAFCASVLGISTAEVSAVATFYT 93 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 Q++ P GT V VC T C + G + + E + DG ++ E VEC A Sbjct: 94 QYKRHPNGT-YTVGVCTNTLCAVMGGDAIWEELSEHLGIGHDETTPDGAITLERVECNAA 152 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AP+VM+ + +++ TP +++D + G+ G Sbjct: 153 CDYAPVVMVNWEFFDNQTPASAVDVVDRLAAGEAVAPTRG 192 >gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK] gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK] Length = 287 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E +I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +A Sbjct: 28 ERLTADAATIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVA 85 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ ++ +P G V VC T C + G + ++E + P +DG ++ E VE Sbjct: 86 TFYSMYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVE 144 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AC AP+VM+ D +++ TP E++D +GQ G Sbjct: 145 CNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRG 188 >gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes HOxBLS] gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes HOxBLS] Length = 158 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 85/159 (53%), Gaps = 2/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SEES + + ++++P ++ +SA I L AQ+++GW+S + +A+ L + + + Sbjct: 1 MLLSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAI 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A+FY+ F PVG + + VC PC + G + + + K+H DG + Sbjct: 61 EEVASFYSMFNTRPVG-KYKIAVCCNLPCEMTGSDVTAQYLKEKLHIGFGETTPDGLFTL 119 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 E EC GAC + P++++ Y +T +R++ +++ Sbjct: 120 VESECMGACGDGPVILVNNKKMYMRMTKDRIDRLLEELK 158 >gi|254391141|ref|ZP_05006348.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|294814398|ref|ZP_06773041.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus ATCC 27064] gi|326442788|ref|ZP_08217522.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|197704835|gb|EDY50647.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064] gi|294326997|gb|EFG08640.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus ATCC 27064] Length = 282 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +VISRYP SR SA++PLL Q +EG+VSR + A +LD+ V +ATFYT + Sbjct: 34 AKDVISRYPDSR--SALLPLLHLVQSEEGFVSRTGMRFCAEVLDLTTAEVTAVATFYTMY 91 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + + E + + DG ++ E +EC AC Sbjct: 92 RRGPSGD-YQVGVCTNTLCAVMGGDAIFEDLKEHLGVGNNGTTEDGKVTLEHIECNAACD 150 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP+VM+ + +++ TP ++D G+ + G Sbjct: 151 FAPVVMVNWEFFDNQTPASARALVDDLRAGRPVSPTRG 188 >gi|266619024|ref|ZP_06111959.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479] gi|288869445|gb|EFD01744.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479] Length = 164 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q FS ++E + EVIS ++ A++P++ +AQ+ G++ ++++ Sbjct: 4 KKQGVLFSGTKEQEAALKEVISELKGTK--GALMPIMQKAQDIYGYLPIEVQTMISDETG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + ++ +ATFY QF L P G + V VC T C ++G + + + Sbjct: 62 IPLEKIYGVATFYAQFALQPKG-KYQVSVCLGTACYVKGSGDIYDKLVELLGITNGECTP 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++MI + Y LTP+ + I+ + Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTPDDVPGILAKY 163 >gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 240 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 5/173 (2%) Query: 17 SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 ++S E+ + ++ SRYP +SA+IP+L Q ++G+V+ I + A L + Sbjct: 19 AYSPETEARLRADIEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTL 78 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFY+QF+ P G HV VC C + G +++ + + DG Sbjct: 79 AEVSAVATFYSQFRRHPAGE-YHVGVCTNALCAVMGGDEIWQAVAEHTGLGNDETSEDGR 137 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 +S E +EC AC AP+VM+ + +++ TP +++ G+ GP+ Sbjct: 138 ISLERIECNAACDYAPVVMVNWEFFDNQTPASAVDMVSRLERGEDVAPTRGPE 190 >gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas sp. 3As] Length = 170 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V Sbjct: 4 MMLSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAV 63 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY F PVG R + VC PC L G E + K+ DG + Sbjct: 64 HEVVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTL 122 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP +++ + PERL+ +++ Sbjct: 123 QESECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 162 >gi|291618186|ref|YP_003520928.1| NuoE [Pantoea ananatis LMG 20103] gi|291153216|gb|ADD77800.1| NuoE [Pantoea ananatis LMG 20103] gi|327394579|dbj|BAK12001.1| NADH-quinone oxidoreductase chain E NuoE [Pantoea ananatis AJ13355] Length = 171 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M + +A + P+ F S E + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 59 AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEEN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQYQ 171 >gi|225569034|ref|ZP_03778059.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM 15053] gi|225161833|gb|EEG74452.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM 15053] Length = 164 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ +EE + VI+ + A++P+L RAQ+ G++ ++++N + ++ Sbjct: 10 FTGTEEQEKELLGVINELKDEK--GALMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+QF LSP G R + VC T C ++G + K+ DG S Sbjct: 68 YGVTTFYSQFNLSPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++MI + Y LT + +++I+ + Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163 >gi|51596903|ref|YP_071094.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis IP 32953] gi|170023804|ref|YP_001720309.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis YPIII] gi|186895984|ref|YP_001873096.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis PB1/+] gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [Yersinia pseudotuberculosis IP 32953] gi|169750338|gb|ACA67856.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis YPIII] gi|186699010|gb|ACC89639.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis PB1/+] Length = 187 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE P +F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AEPAAMPDAFELSTEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186 >gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1] gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1] Length = 286 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E +I+RYP +R SA++PLL Q Q+G ++ A I A+ L + V +A Sbjct: 28 ERLTADAETIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVA 85 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ ++ +P G V VC T C + G + ++E + P +DG ++ E VE Sbjct: 86 TFYSMYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVE 144 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AC AP+VM+ D +++ TP E++D +GQ G Sbjct: 145 CNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRG 188 >gi|206901697|ref|YP_002250292.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus thermophilum H-6-12] gi|206740800|gb|ACI19858.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus thermophilum H-6-12] Length = 161 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + + V E++ ++ + +I +L+ Q++ ++ I + LD++ ++ +A Sbjct: 4 KRNFAKVEEILKKH--GYRKDNLIKILLDVQKEYRYLPEDVINYIGVALDISPAKIYGVA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G LI + +++ P D S ++V Sbjct: 62 TFYAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVG 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C GAC AP+++I ++ Y +LTPE+++EI+ + + Sbjct: 121 CLGACALAPVMVINEEVYGNLTPEKVKEILRNLKEREME 159 >gi|312144192|ref|YP_003995638.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp. 'sapolanicus'] gi|311904843|gb|ADQ15284.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp. 'sapolanicus'] Length = 160 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 VNE++ RY + + +IP+L AQE+ G++ + +A L+++ +V + TFY Sbjct: 13 LKPVNEILGRY--EKKERYLIPVLQEAQEEYGYLPEEVLTEIALRLNLSLSQVYGVVTFY 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 +QF P G ++VC T C +RG +++ + ++ D + E V C G Sbjct: 71 SQFHQEPRGN-NIIRVCMGTACHVRGGGQILSALKEELEIDSGETTDDLNFTLESVACIG 129 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AC AP++M+ DT+ L PE + I+ + Sbjct: 130 ACGLAPVIMVNDDTHGRLIPEEIPSILAKYK 160 >gi|260598702|ref|YP_003211273.1| NADH dehydrogenase subunit E [Cronobacter turicensis z3032] gi|260217879|emb|CBA32428.1| NADH-quinone oxidoreductase subunit E [Cronobacter turicensis z3032] Length = 166 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + + KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLTPEGIPELLEQYK 166 >gi|329296022|ref|ZP_08253358.1| NADH-quinone oxidoreductase subunit E [Plautia stali symbiont] Length = 171 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +++A + P+ F SE + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQKIAIQTIDPTEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI +A +L + V +ATFY+Q +PVG ++ C + C + G + + Sbjct: 59 AINAIAEVLGIPASDVEGVATFYSQIYRTPVGC-HVIRYCDSVVCHITGYQGIQAALEQN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIANLLEQYQ 171 >gi|302521198|ref|ZP_07273540.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78] gi|318057839|ref|ZP_07976562.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actG] gi|318078937|ref|ZP_07986269.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actF] gi|302430093|gb|EFL01909.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78] Length = 286 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 + E + E+ISRYP +R SA++PLL Q +EG V+R + A L + Sbjct: 15 DYPPEVRARLEADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTT 72 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT ++ P G V VC T C + G + + E + + DG Sbjct: 73 AEVNAVATFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGK 131 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 132 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 182 >gi|322436007|ref|YP_004218219.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX9] gi|321163734|gb|ADW69439.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX9] Length = 169 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 98/164 (59%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E A + +I+ YP R SA++P+L+ AQ++ G+VS AI+ +A LD+ + V Sbjct: 9 FSPEMAAKFDHLITIYPLKR--SALVPMLLYAQDELGFVSEPAIKEIAQRLDLFDLDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CMLRG ++++ C+ K+ DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGYEILDHCKAKLGIGHKQTTPDGQFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP + + D ++DLT ++++I+ ++ G+G ++ Sbjct: 126 VECIGACCWAPAMQVNYDFHDDLTTVKVDDILAEYAAGRGKDVK 169 >gi|291280353|ref|YP_003497188.1| NADH-quinone oxidoreductase subunit E [Deferribacter desulfuricans SSM1] gi|290755055|dbj|BAI81432.1| NADH-quinone oxidoreductase, E subunit [Deferribacter desulfuricans SSM1] Length = 171 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++E+ + Y + A IP+L + QE G++S+ ++ +A L+M+ + + TF Sbjct: 19 DLSAIDEICAEYKG--RKGATIPVLQKVQEHYGYLSKEMVDRIAENLNMSPHTIYGVITF 76 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF +P G + ++VC T C ++G ++ EV + K +SD + EEV C Sbjct: 77 YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVTEEFGIKNGETSSDLKFTLEEVSCI 135 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 GAC AP++MI TY +LTPE+ EI ++ Sbjct: 136 GACGMAPVIMINDKTYGNLTPEKAREIFREYAK 168 >gi|226944921|ref|YP_002799994.1| NADH dehydrogenase subunit E [Azotobacter vinelandii DJ] gi|226719848|gb|ACO79019.1| NADH-ubiquinone oxidoreductase, chain E [Azotobacter vinelandii DJ] Length = 164 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + Y R +A I L Q+Q GWV AI + IL + Sbjct: 5 IQTDRFVLSETERSAIEHETHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEILGI 62 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ R K+ P D Sbjct: 63 PASDVEGVATFYSQIFRVPVG-RHVIRVCDSMTCFIGGHETVLAALRQKLGIVPGQTTRD 121 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VMI DT+ +LTPE +E++++A+ Sbjct: 122 GRFTLLPVCCLGNCDKAPAVMIDDDTFGNLTPEGIEQLLEAY 163 >gi|222099660|ref|YP_002534228.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM 4359] gi|221572050|gb|ACM22862.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM 4359] Length = 165 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE ++E I + + +I +L +AQE G++ +E +++ L++ +V + Sbjct: 9 EELFKELDEFIEKNNYEGKKDVLIQVLHKAQELFGYLPADVLEFISDKLNVPLSKVYGVV 68 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + ++VC T C ++G +++ E ++ P SDG S V Sbjct: 69 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVSPDEPTSDGLFSVHGVR 127 Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 C GAC AP+VM+ D Y +TP+ + +II+ + Sbjct: 128 CLGACSMAPVVMVDDSDFYGRVTPDMVPQIINKYRR 163 >gi|296132261|ref|YP_003639508.1| NADH-quinone oxidoreductase, E subunit [Thermincola sp. JR] gi|296030839|gb|ADG81607.1| NADH-quinone oxidoreductase, E subunit [Thermincola potens JR] Length = 158 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++++Y + A+IP+L + Q+ G++ + A++ ++ L + + + TFY Sbjct: 11 QEALEALLAKYKSQK--GALIPVLQQTQDIYGYLPKEALQQISRELKIPLSEIFGVCTFY 68 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF LSP G R ++VC T C +RG K+ E + ++ K D + E V C G Sbjct: 69 AQFHLSPRG-RNIIRVCLGTACHVRGGAKIFERVQQELGIKDGETTEDLRFTIESVACIG 127 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP++M+ DT+ LTP+++ +I+ + Sbjct: 128 ACGLAPVIMVNDDTHGRLTPDQIPDILAQY 157 >gi|225016112|ref|ZP_03705345.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum DSM 5476] gi|224951109|gb|EEG32318.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 ++ F +EE A + VI +Y A +P+L AQE G++ ++A Sbjct: 2 KKRISSIPFKGTEEQAQRLQAVIEKYKD--VPGANMPVLQEAQEIYGYLPIEVQSMIAEG 59 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + + I TFY+QF LSP G + ++ VC T C ++G L++ ++ +P Sbjct: 60 LGVPIETLYGITTFYSQFSLSPKG-KYNISVCMGTACYVKGSGALLDRITKRLGIQPEET 118 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 SDG S C GAC AP++ I + Y LT + ++ I+D + Sbjct: 119 TSDGRFSLTACRCIGACGLAPVLTINDEVYGRLTVDDIDGILDKY 163 >gi|301631487|ref|XP_002944829.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 163 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 2/163 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E + +++YPP + QSAV+ L Q+++GWVS+ + V+A IL M I V E Sbjct: 1 MTEATKQRFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSQESEAVIAEILGMPQIAVHE 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY + PVG + + VC PC LRG + + K+ + DG + ++ Sbjct: 61 VTTFYNMYNQHPVG-KFKLNVCTNLPCQLRGGYEALHHLEAKLGVQMGETTPDGLFTLQQ 119 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC +AP++++ + + E+L++++D +G Sbjct: 120 CECLGACADAPVMLVNDRNMCSFMDGEKLDQLVDGLKAAEGKA 162 >gi|333025115|ref|ZP_08453179.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071] gi|332744967|gb|EGJ75408.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071] Length = 279 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 + E + E+ISRYP +R SA++PLL Q +EG V+R + A L + Sbjct: 8 DYPPEVRARLEADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTT 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT ++ P G V VC T C + G + + E + + DG Sbjct: 66 AEVNAVATFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGK 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ TPE ++D G+ G Sbjct: 125 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 175 >gi|325262529|ref|ZP_08129266.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] gi|324032361|gb|EGB93639.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] Length = 164 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q FS ++E + +VI+ + A++P+L +AQ+ G++ +++N Sbjct: 4 KKQTVPFSGTKEQEESLLKVITELKDEK--GALMPILQKAQDIYGYLPIEVQTIISNETG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + ++ + TFY+QF LSP G + + VC T C ++G + K+ Sbjct: 62 IPLEKIYGVVTFYSQFTLSPKG-KYQISVCLGTACYVKGSGDIYNALMEKLGIVGGECTP 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++M+ + Y LT + +++I+ + Sbjct: 121 DGKYSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163 >gi|271501265|ref|YP_003334290.1| NADH-quinone oxidoreductase subunit E [Dickeya dadantii Ech586] gi|270344820|gb|ACZ77585.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech586] Length = 176 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A + F S+ + Y +R +A I L Q+Q GWV AI +A Sbjct: 12 DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAINAIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 70 DVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ L P+ L+ +++ + Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDLDSLLEQYQ 176 >gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12] gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12] Length = 179 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE + ++ +++YPP + QSAVI L Q+++GWVS A + VA+ L M I V Sbjct: 13 MMLSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAV 72 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY F PVG R + VC PC L G E + K+ DG + Sbjct: 73 HEVVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTL 131 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP +++ + PERL+ +++ Sbjct: 132 QESECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 171 >gi|238897508|ref|YP_002923187.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465265|gb|ACQ67039.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 174 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 7/176 (3%) Query: 1 MSVRRLAEEEFQPS----SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56 MS + E + F S E + E Y +R +A I L Q++ GWV Sbjct: 1 MSHHKNLSEHQIDAMNVVPFVLSSEERDAIEEEKHHYEDAR--AASIEALKIVQKKRGWV 58 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 AI +A +L + V +ATFY+Q PVG R ++ C + C + G +K+ V Sbjct: 59 PDEAIHAIAEVLGIPASDVEGVATFYSQIFRKPVG-RHVIRYCDSVVCYITGYQKIQAVL 117 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L E ++ +++ + Sbjct: 118 EEKLGIQPGQTTKDGRFTLLPTCCLGNCDKGPTMMIDDDTHSHLQIENIDTLLEQY 173 >gi|167629825|ref|YP_001680324.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e [Heliobacterium modesticaldum Ice1] gi|167592565|gb|ABZ84313.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e [Heliobacterium modesticaldum Ice1] Length = 191 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E + ++ +Y R A+IPLL QE G++ A+E +A L + +V +AT Sbjct: 42 EKDRRLAALLEKYREER--GALIPLLQGVQEIYGYLPGPAMERIARTLRLPAAQVYGVAT 99 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY QF +P G R ++VC T C +RG ++ E R ++ + +D + E V C Sbjct: 100 FYAQFHFAPRG-RHVIRVCLGTACHVRGGARIFEALRRQLGVEDGGTTADLRYTLESVAC 158 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++MI DT+ LTPE L I+ + Sbjct: 159 IGACGLAPVIMIDDDTHGRLTPESLPGILARY 190 >gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1] gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S+E+ ++ +++YP + QSAV+ L AQ + GW+ + +A+ + M + V Sbjct: 1 MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F SPVG + + VC PC+L G E+ + K+ +DG + Sbjct: 61 QEVATFYNMFNTSPVG-KHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 E EC GAC +AP++++ ++ E+++ +++ Sbjct: 120 MEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159 >gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC 13950] Length = 252 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 16/206 (7%) Query: 5 RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53 RL +P++F S+ E + E++ RYP R SA++PLL Q Q+ Sbjct: 12 RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPEKR--SALLPLLHLVQAQD 69 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 +++ A +E L ++ V +A+FYT ++ P G V VC T C + G + + Sbjct: 70 SYLTPAGLEFCGEQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAVMGGDAIF 128 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + +DG+++ + +EC AC AP+VM+ + +++ T E E++D+ Sbjct: 129 DALKEHLGIGNDETTADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESARELVDSLR 188 Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197 +G+ G + R +S GL Sbjct: 189 SGEPKAPTRGAPLCAFRETSRILAGL 214 >gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica DSM 15894] gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica DSM 15894] Length = 302 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++RYP R S ++P+L Q +G+VS I A L + V +ATFYTQ+ Sbjct: 15 AEAIVARYPDPR--SGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAEVSAVATFYTQY 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P GT V VC T C + G + + + + DG ++ E VEC AC Sbjct: 73 KRHPNGT-YTVGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITLERVECNAACD 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 AP++M+ + +++ TPE + D G+ G Sbjct: 132 YAPVMMVNWEFFDNQTPESAAAVADDLRAGKPVRPTRGADS 172 >gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae ATCC 10712] Length = 246 Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ RYP SR SA++P+L Q +EG V+R + A L + V +ATFY+ Sbjct: 27 EDARAIVDRYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAEVTAVATFYS 84 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ P G V VC T C + G + + E + + DG ++ E +EC A Sbjct: 85 MYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITLEHIECNAA 143 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AP+VM+ + +++ TPE ++++D G+ G Sbjct: 144 CDFAPVVMVNWEFFDNQTPESAKKMVDDLRAGRTVEPTRG 183 >gi|294637176|ref|ZP_06715484.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685] gi|291089640|gb|EFE22201.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685] Length = 166 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S+ + + I Y R +A I L Q++ GWV AAI+ +A +L + V Sbjct: 12 FVLSDNARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDAAIDAIAEVLGIPAADV 69 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R V+ C + C + G + + ++ +P DG + Sbjct: 70 EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLNIQPGETTCDGRFTL 128 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C P +MI +D ++ LTPER E+++ + Sbjct: 129 LPTCCLGNCDKGPNMMIDEDLHDHLTPERAIELLERYK 166 >gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille] gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille] Length = 159 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++PP + QSAV+ L AQ++ W+ ++ VA+ L M I V Sbjct: 1 MLLSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY + PVG + + VC PC L G EK + K+ D + Sbjct: 61 QEVATFYNMYNTKPVG-KFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTL 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 E EC GAC +AP++++ ++ E+++ +++ Sbjct: 120 VEGECMGACGDAPVMLVNNKRMCSFMSDEKIDALVEELKK 159 >gi|160936131|ref|ZP_02083504.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC BAA-613] gi|158440941|gb|EDP18665.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC BAA-613] Length = 164 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 3/164 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q F + E + I+ A++P++ +AQE G++ ++++ + Sbjct: 4 KKQTVPFKGTPEQEAALKSAIAELGD--QPGALMPVMQKAQEIYGYLPIEVQTMISDEMG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + +V ++TFY QF L P G + + VC T C ++G ++ + + Sbjct: 62 IPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFRKLEELLGITNGECTA 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG S + C GAC AP++MI + Y LT + + I+ ++ Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKYN 164 >gi|323484498|ref|ZP_08089864.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum WAL-14163] gi|323692559|ref|ZP_08106792.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673] gi|323402276|gb|EGA94608.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum WAL-14163] gi|323503425|gb|EGB19254.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673] Length = 164 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F+ + E + VIS + A++P+L AQE G++ ++++ + ++ Sbjct: 10 FTCTAEQEADLKRVISELKDT--AGALMPILQHAQEIFGYLPIEVQTMISDETGIPLEKI 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L P G + VC T C ++G + + + DG S Sbjct: 68 YGVATFYSQFSLQPKGQ-YRISVCLGTACYVKGSGDIFKKLEELLGITNGECTPDGKFSL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP++MI + Y LT + + I+ + Sbjct: 127 DSCRCVGACGLAPVMMINDEVYGRLTVDDVPTILAKY 163 >gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718] gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas europaea ATCC 19718] Length = 162 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP R QSAV+ L AQ+++GW++ ++ +A+ L+M I V E Sbjct: 6 LSTEALRKIDREVAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAIAVYE 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC L G + + + K+ +DG + +E Sbjct: 66 VATFYNMYNLKPVG-KYKLTVCTNLPCALSGGNQTADYLKQKLGIGFNETTTDGLFTLKE 124 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 EC G+C +AP++++ +T ++++++++ + Sbjct: 125 GECMGSCGDAPVLLVNNKRMCSFMTEDQIDKLLEELNR 162 >gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans] gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans] Length = 159 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ I+++P + QSAV+ L AQ++ GW+ ++ VA+ L M I V Sbjct: 1 MLLSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY + PVG + + VC PC+L G E+ ++K+ +DG + Sbjct: 61 QEVATFYNMYDTKPVG-KHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 E EC GAC +AP++++ ++ ++++ +++ Sbjct: 120 IEGECMGACGDAPVMIVNNKRMCSFMSDDKIDALVEELKK 159 >gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus KT] gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT] Length = 159 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S ES ++ +++YPP Q+AV+ L AQ ++GW+S+ I VA+ L + I Sbjct: 1 MSLSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAA 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 LE+ATFY ++L PVG + + VC CMLR +++ + ++ D + Sbjct: 61 LEVATFYNMYELEPVG-KYKITVCTNISCMLRDSAEIVAHLQKRLGIGFNETTPDNRYTL 119 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 E EC G C AP++ I + +E LTPE++++I++ Sbjct: 120 REGECMGCCGGAPLLHINNTEMHEFLTPEKVDQILEGL 157 >gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74] gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74] Length = 166 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +F+ E E+I+RYP + +SA++PLL QEQEGW S ++ VA +LD+ I V Sbjct: 10 TFTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPIEVY 69 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FYT + L+PVG + ++ C T PC L G E + + ++ DG + + Sbjct: 70 EVASFYTMYHLNPVG-KHVIEYCRTGPCCLMGGEDVYAHLKQRLGIDTGQTTVDGQFTLK 128 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 EVEC AC P+ I + Y LT ER++EIID S Sbjct: 129 EVECLAACGMGPVFQIREKYYMHLTNERVDEIIDELSK 166 >gi|66219966|gb|AAY42999.1| Nqo2 [Rhodothermus marinus] Length = 224 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 5/176 (2%) Query: 6 LAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 L E P+ F+EE + +Y AV+ L AQE+ G++ +++V Sbjct: 15 LHPEPQIPADQLFFTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQLV 72 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A+ L + Y +V +ATFYTQ+ G + + VC C + G ++ K+ Sbjct: 73 ADELGIPYAQVYGVATFYTQYYKEKKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIHK 131 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 DG + +EVEC GAC +AP++ + +LTPE+++++++ G+ Sbjct: 132 GETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187 >gi|188533350|ref|YP_001907147.1| NADH dehydrogenase subunit E [Erwinia tasmaniensis Et1/99] gi|292488840|ref|YP_003531727.1| NADH dehydrogenase I subunit E [Erwinia amylovora CFBP1430] gi|292899991|ref|YP_003539360.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946] gi|188028392|emb|CAO96253.1| NADH dehydrogenase I chain E [Erwinia tasmaniensis Et1/99] gi|291199839|emb|CBJ46963.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946] gi|291554274|emb|CBA21593.1| NADH dehydrogenase I chain E [Erwinia amylovora CFBP1430] gi|312173000|emb|CBX81255.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC BAA-2158] Length = 171 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171 >gi|217970160|ref|YP_002355394.1| NADH dehydrogenase subunit E [Thauera sp. MZ1T] gi|217507487|gb|ACK54498.1| NADH-quinone oxidoreductase, E subunit [Thauera sp. MZ1T] Length = 159 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ I++YPP + QSAV+ L AQ ++GW+ + IE VA L M I E Sbjct: 2 LSQESLQQIDREIAKYPPDQTQSAVMAALRIAQVEKGWLPKELIEFVARYLGMPPIAAFE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L+PVG R + VC PC L G + + K+ DG + +E Sbjct: 62 VASFYNMYDLAPVG-RHKITVCTNLPCALSGGVHAADYIKEKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E++++++ Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQMLAEL 156 >gi|160872029|ref|ZP_02062161.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e) (ndh-1, chain e) [Rickettsiella grylli] gi|159120828|gb|EDP46166.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e) (ndh-1, chain e) [Rickettsiella grylli] Length = 168 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 EE +++ I +YP +R QSA++ L AQE G ++S+ I+ VA+ L M+ + Sbjct: 11 LPEELKKAIDKWIQKYPSTRRQSAILQALTIAQEYNGGYLSQYLIDAVADYLAMSRVTAY 70 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFYT ++L PVG R + VC CML GC+K+++ + +++ +D + Sbjct: 71 EVATFYTLYELKPVG-RHKIGVCTNISCMLSGCDKIVKHLQTRLNINLGETTADKKFTLR 129 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EVEC GAC NAP+V IG YE LTPE+L++I+D Sbjct: 130 EVECLGACANAPVVHIGHRYYETLTPEKLDKILDGL 165 >gi|291544583|emb|CBL17692.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp. 18P13] Length = 166 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F + E + ++ + ++ A++P++ +AQ+ G++ +++++ + + Sbjct: 10 PFHGTAEQEAQLRAMVDQLKDTK--GALMPIMQKAQDIYGYLPIEVQTIISDMTGIPLEK 67 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFY+QF L P G + VC T C ++G + E + + + +DG S Sbjct: 68 IYGVATFYSQFSLYPKGQ-YTISVCLGTACYVKGSGDVFEKLKQILGIEDGQCTADGKFS 126 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E C GAC AP++ I D Y LT E L I++ ++ Sbjct: 127 LEACRCIGACGLAPVMTINDDVYGRLTVEELPAILEKYN 165 >gi|268607921|ref|ZP_06141652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ruminococcus flavefaciens FD-1] Length = 164 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 F + E + +VI + A++P+L +AQE G++ ++++ + Sbjct: 6 STVPFKGTPEQEKELLKVIE--EKKSDKGALMPILQKAQEIYGYLPIEVQAIISDNTGIP 63 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY QF L P G + VC T C ++G + + K+ DG Sbjct: 64 LEKIYGVVTFYAQFSLYPKGE-YTISVCLGTACYVKGSGDIYNKLQEKLGIGGGECTPDG 122 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S + C GAC AP++ + +D Y LT + +++II ++ Sbjct: 123 KFSLDACRCIGACGLAPVLTVNEDVYGRLTVDDVDKIIAKYA 164 >gi|251789017|ref|YP_003003738.1| NADH-quinone oxidoreductase subunit E [Dickeya zeae Ech1591] gi|247537638|gb|ACT06259.1| NADH-quinone oxidoreductase, E subunit [Dickeya zeae Ech1591] Length = 176 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A + F S+ + Y +R +A I L Q+Q GWV AI+ +A Sbjct: 12 DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIDAIA 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 IL + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 70 EILGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +M+ +DT+ L P+ L+ +++ + Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMVDEDTHSQLKPDDLDSLLEQYQ 176 >gi|225871981|ref|YP_002753435.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC 51196] gi|225792810|gb|ACO32900.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC 51196] Length = 166 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E A + +++ YP R SA+IP+L+ AQ++ G++S A + VA + +A + V Sbjct: 9 FSPELAARFDRLVTLYPVKR--SALIPMLLYAQDEVGYISDAVVAEVAERIGIAELDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + PVG + HVQVC CMLRG +L+ C ++ +DG S EE Sbjct: 67 VVSYYSLMRTKPVG-KYHVQVCTNIACMLRGGNELLHHCSKRLGIGNKQTTADGVFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 VEC GAC AP V + D +E+LTPE +++++D + Sbjct: 126 VECIGACSWAPAVQVNYDFHENLTPELMDKVLDEYRA 162 >gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424] gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus taiwanensis LMG 19424] Length = 167 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VAN L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KYKLTVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ ++L+ +++ Sbjct: 123 GECMGACGDAPVMIVNNTRMCSWMSDDKLDALVEELKA 160 >gi|78485166|ref|YP_391091.1| NADH-quinone oxidoreductase, E subunit [Thiomicrospira crunogena XCL-2] gi|78363452|gb|ABB41417.1| NADH dehydrogenase I chain E [Thiomicrospira crunogena XCL-2] Length = 164 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATF 81 ++ ++RYP + QSAV+ L QE G ++ ++ +A+ L+M I V E+ATF Sbjct: 14 KERIDRWVARYPDDQKQSAVMAALRIVQETNGGHLTTELMDQIADYLEMPPIAVYEVATF 73 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y ++ PVG + + +C + CMLRG ++++ K++ K DG S ++VEC Sbjct: 74 YGNYEHEPVG-KHKICLCNSISCMLRGNDEILAHMEKKLNIKVGEVTEDGRFSIKKVECL 132 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC APM+ IGK YE+LT ++EI+D Sbjct: 133 GACGGAPMIQIGKTYYENLTETSVDEILDGL 163 >gi|150390844|ref|YP_001320893.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149950706|gb|ABR49234.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 163 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E+ ++E+I R+ ++IP+L QE ++ + + V+A D++ ++ +A Sbjct: 5 KENGDKIDEIIERH--RHNPGSIIPILQEIQEVFNYLPKDILAVIAEKTDISPAKIYGVA 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF+L PVG + +C T C + G +K+ E N++ + DG + V Sbjct: 63 TFYKQFRLKPVGN-YLILLCQGTACHVNGSKKIEETLYNELKIRDGETTEDGLFTLNNVA 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +P++MI ++TY L PE++ +II Sbjct: 122 CLGCCSLSPVMMINEETYGSLVPEQVIKIITELK 155 >gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1] gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1] Length = 175 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 2/162 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YPP + QSAV+ L Q+++GWVS + V+A+ L M I V E+ Sbjct: 15 TEATLARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEV 74 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + P+G + + VC PC LR +K + K+ DG + ++ Sbjct: 75 TTFYNMYNQQPLG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGITMGETTPDGLFTLQQC 133 Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179 EC GAC +AP++++ T + E+L++++D +G Sbjct: 134 ECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEGQA 175 >gi|319787439|ref|YP_004146914.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas suwonensis 11-1] gi|317465951|gb|ADV27683.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas suwonensis 11-1] Length = 175 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+ + ++ ++++PP R +SAV+ L AQEQ +GW+S I VA LD+ + Sbjct: 19 LSDATRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLSDELIAAVAKYLDIPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F+ PVG R +V C C L G + L+ K+ K +DG + + Sbjct: 79 EVATFYSMFETQPVG-RNNVAFCTNISCWLNGAQDLVAHAEKKLGCKLGESTADGRVYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EC AC AP+V+I +E LT E+++E++D Sbjct: 138 REEECVAACCGAPVVVINGHYHEKLTTEKVDELLDGLK 175 >gi|322831987|ref|YP_004212014.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602] gi|321167188|gb|ADW72887.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602] Length = 178 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E P F S+ + Y +R +A I L Q+ GWV AI ++++L Sbjct: 17 EPVVPPVFVLSDAEREAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIYAISDVL 74 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + + ++H KP Sbjct: 75 GIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQQLHIKPGETT 133 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ LTPE + +++ ++ Sbjct: 134 EDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIGSLLERYA 178 >gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 168 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ATFY Sbjct: 4 REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F P+G R H+Q+C CML G E L+ + + DG + VEC G Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLEKTLGIRKGETTPDGAFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 AC AP++ +G D + +L RL+ ++++F + T ++R ++AP Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVTS-----VERAAAAP 166 >gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora setae KM-6054] Length = 246 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 3/172 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P A E+ISRYP SR SA++PLL Q ++G V+ I A L++ Sbjct: 14 KPYPPEVEARLAADARELISRYPQSR--SALLPLLHLVQAEDGCVTPTGIRFCAEQLELT 71 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFYT ++ P G HV VC T C + G +++ + + DG Sbjct: 72 TAEVTAVATFYTMYRRRPAGE-YHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDG 130 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++S E +EC AC AP+VM+ + +++ TPE +E++D GQ G Sbjct: 131 SVSIERIECNAACDYAPVVMVNWEFFDNQTPESAKELVDRLRAGQEVRPTRG 182 >gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 5/189 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + S+ V+ +++RY + ++P+L QE G++ + ++ L + V Sbjct: 14 ALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCQLKVPGSDVF 71 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ + P G + ++ C + PC + G E ++ + ++ K +D + E Sbjct: 72 GVMSFYSMYTWQPKG-KYVIRFCESPPCHIAGAENMLHFMQEELGIKVGETTADSLFTLE 130 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRISSAPA 194 C G C AP + I + + +LT +++ +I+ + G+ + P S A Sbjct: 131 TTACLGICEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPYSTNAFRSYKQA 190 Query: 195 GGLTSLLDN 203 G LL+N Sbjct: 191 PGELILLEN 199 >gi|259907930|ref|YP_002648286.1| NADH dehydrogenase subunit E [Erwinia pyrifoliae Ep1/96] gi|224963552|emb|CAX55042.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae Ep1/96] gi|283477811|emb|CAY73727.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae DSM 12163] Length = 171 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 1 MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59 M +R+A E S +F S + Y +R +A I L Q+Q GWV Sbjct: 1 MHDQRIAIETIDESGAFVLSASERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 AI+ +A +L + V +ATFY+Q +PVG R ++ C + C + G + + Sbjct: 59 AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ KP +DG + C G C P +M+ +DT+ LTPE + +++ + Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171 >gi|261820795|ref|YP_003258901.1| NADH dehydrogenase subunit E [Pectobacterium wasabiae WPP163] gi|261604808|gb|ACX87294.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium wasabiae WPP163] Length = 181 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 3/170 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 + +A+ + ++F S+ + Y +R +A I L Q+ GWV AI Sbjct: 15 QPVADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIHA 72 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +A++L + V +ATFY+Q PVG R ++ C + C + G + + K+ K Sbjct: 73 IADLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIK 131 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P DG + C G C P +MI DT+ +TPE +E +++ + Sbjct: 132 PGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIETLLEQYQ 181 >gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91] gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91] Length = 162 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 2/162 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 SS S E+ ++ I++YP + QSAV+ L AQ+++GW++ ++ +AN L+M I Sbjct: 2 SSLMLSMEALKKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAI 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + L P+G + + VC PC L G + ++ + K+ DG Sbjct: 62 AVYEVATFYNMYNLKPIG-KYKLTVCTNLPCALSGSNQTVDYLKKKLDIGFNETTVDGLF 120 Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 + +E EC GAC +AP++++ +T ++++++++ Sbjct: 121 TLKEGECMGACGDAPVLLVNNKRMCSFMTEDQIDKLLEELKR 162 >gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 5/193 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P++ + S+ V+ +++RY + ++P+L QE G++ + ++ L++ Sbjct: 10 PAASALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCKLNIPG 67 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V + +FY+ + P G + ++ C + PC ++G + L+E + ++ H DG Sbjct: 68 SDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAELGVPLKHTTKDGL 126 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRIS 190 + E C G C AP + I + + +LT +++ +I+ + G+ + P S Sbjct: 127 FTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPYSTNAFRS 186 Query: 191 SAPAGGLTSLLDN 203 A G LL+N Sbjct: 187 YKQAPGELILLEN 199 >gi|332162386|ref|YP_004298963.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606465|emb|CBY27963.1| NADH-ubiquinone oxidoreductase chain E [Yersinia enterocolitica subsp. palearctica Y11] gi|325666616|gb|ADZ43260.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860333|emb|CBX70646.1| NADH-quinone oxidoreductase subunit E [Yersinia enterocolitica W22703] Length = 187 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 2 SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 +V LA +P++ F S E + Y +R +A I L Q+Q GWV Sbjct: 15 NVANLAVNAAEPATTAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 73 DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|82777693|ref|YP_404042.1| NADH dehydrogenase subunit E [Shigella dysenteriae Sd197] gi|309785011|ref|ZP_07679644.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617] gi|81241841|gb|ABB62551.1| NADH dehydrogenase I chain E [Shigella dysenteriae Sd197] gi|308927381|gb|EFP72855.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617] Length = 166 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + + Y R +A I L Q+Q GWV AI +A Sbjct: 2 HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 60 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C +MI +DT+ LTPE + E+++ + Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGLNMMIDEDTHAHLTPEAIPELLERYK 166 >gi|157364372|ref|YP_001471139.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO] gi|157314976|gb|ABV34075.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO] Length = 162 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 38 CQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 + +I +L R Q+ G ++ A E+VA L++ +V E+ TFYT F P G R + Sbjct: 21 ERDILINILHRIQDHFGNYIPPEAAEIVAEELNVPPSKVYEVLTFYTMFSTKPRG-RYVI 79 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC PC + G ++++ + ++ K DG + E C G C AP++MI Sbjct: 80 RVCVNLPCHVTGGREIVKTIQEMLNVKFGETTEDGLFTLETTSCLGLCGVAPVIMINDQY 139 Query: 157 YEDLTPERLEEIIDAFSTG 175 Y DLT +++ EII++ G Sbjct: 140 YGDLTVKKIREIIESLRQG 158 >gi|119897691|ref|YP_932904.1| NADH dehydrogenase subunit E [Azoarcus sp. BH72] gi|119670104|emb|CAL94017.1| putative NADH-ubiquinone oxidoreductase chain E [Azoarcus sp. BH72] Length = 159 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ES ++ I++YPP + QSA + L AQ ++GW+S+ I VA+ L M I V E Sbjct: 2 LSQESLQQIDREIAKYPPDQKQSAAMSALRIAQVEKGWLSKETIAFVADYLQMPAIAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG R + VC PC L G E + K+ DG + +E Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAAEYIKQKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 EC GAC +AP+++ T +T E++++++ Sbjct: 121 GECMGACGDAPVLLHNNHTMCSWMTTEKIDQLLADL 156 >gi|302340165|ref|YP_003805371.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM 11293] gi|301637350|gb|ADK82777.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM 11293] Length = 161 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 14/174 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MSV+ E FS+ ++ E ++ +I +L + QE+ G++ R A Sbjct: 1 MSVQSEVE-------MKFSDSLVAFIEEWKNK------PGNLIMILHKVQEEFGYIPREA 47 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++LD+ ++ + TFY F+L+ G + ++QVC T C L+G E +I+ N + Sbjct: 48 AKRVASMLDVPLAKIYGVVTFYHFFKLTKPG-KHNIQVCMGTACYLKGGEDIIQELENIL 106 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 DG S E V C G C AP+++IG + + LT E+L EI+ F Sbjct: 107 GIGVNQVTPDGQFSLEAVRCVGCCGLAPVMVIGDEVFGKLTKEQLPEILAKFQE 160 >gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1] gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1] Length = 307 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 6/181 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 VR A EE+ P + VI RYP SR SA++PLL Q ++G ++ A IE Sbjct: 27 VRPGAREEYPP---EVGARLDADADVVIGRYPNSR--SALLPLLHLVQAEDGCITPAGIE 81 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A L + V +ATFY+ ++ P G V VC T C + G + ++ + Sbjct: 82 FCAGRLGLTGAEVAAVATFYSMYRRDPTGDYY-VGVCTNTLCAIMGGDAILAALEEHLDL 140 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++DG ++ E +EC AC AP+VM+ + +++ TPE ++D+ +G+ + Sbjct: 141 PHGGTSADGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPESARSLVDSLRSGERVSPSR 200 Query: 183 G 183 G Sbjct: 201 G 201 >gi|261856546|ref|YP_003263829.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus neapolitanus c2] gi|261837015|gb|ACX96782.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus neapolitanus c2] Length = 165 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+ + ++ +S+YPP + QSAV+ L Q Q EG+++ ++ +A L+M I V Sbjct: 9 LSDHTRHEIDHWLSKYPPEQKQSAVLAALRETQHQNEGYLTTDLMDAIAEYLEMPPISVY 68 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ + P G R HV +C C L G ++++ C K+ K DG + + Sbjct: 69 EVATFYSMLETKPCG-RHHVSICTNISCALMGSDEIVAHCEKKLGIKLGESTPDGRIYLK 127 Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E EC AC PM+ + YE LTP++++ I+D Sbjct: 128 VEEECLAACDGGPMMQVDHVYYERLTPQKVDAILDKL 164 >gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160] gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160] Length = 161 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S +E VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|50121948|ref|YP_051115.1| NADH dehydrogenase subunit E [Pectobacterium atrosepticum SCRI1043] gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase chain E [Pectobacterium atrosepticum SCRI1043] Length = 181 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 14/184 (7%) Query: 1 MSVRRLAEE---EFQPSS--------FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRA 49 M + + QP++ F S+ + Y +R +A I L Sbjct: 1 MHDHNNHDHIDAQGQPAADSLTKENAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIV 58 Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109 Q+ GWV AI +A++L + V +ATFY+Q PVG R ++ C + C + G Sbjct: 59 QKARGWVPDGAINAIADLLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGY 117 Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + + K+ KP DG + C G C P +MI DT+ +TPE +E ++ Sbjct: 118 QGVQAALERKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLL 177 Query: 170 DAFS 173 + + Sbjct: 178 EQYQ 181 >gi|190575274|ref|YP_001973119.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia K279a] gi|190013196|emb|CAQ46829.1| putative respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Stenotrophomonas maltophilia K279a] Length = 175 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|268317704|ref|YP_003291423.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM 4252] gi|262335238|gb|ACY49035.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM 4252] Length = 224 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 5/176 (2%) Query: 6 LAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 L E P+ F+EE + +Y AV+ L AQE+ G++ +++V Sbjct: 15 LHPEPQIPADQLFFTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQLV 72 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A+ L + Y +V +ATFYTQ+ G + + VC C + G ++ K+ Sbjct: 73 ADELGIPYAQVYGVATFYTQYYKERKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIHK 131 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 DG + +EVEC GAC +AP++ + +LTPE+++++++ G+ Sbjct: 132 GETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187 >gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8] gi|4980495|gb|AAD35106.1|AE001689_12 NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8] Length = 176 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + I + A+I +L +AQE G++ +E +++ LD+ +V + Sbjct: 20 EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 79 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + ++VC T C ++G +++ E ++ P SDG S V Sbjct: 80 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 138 Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174 C GAC AP+VM+ D Y +TP+ + +II + Sbjct: 139 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKR 174 >gi|254525004|ref|ZP_05137059.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp. SKA14] gi|219722595|gb|EED41120.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp. SKA14] Length = 175 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ EGW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|299138538|ref|ZP_07031717.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX8] gi|298599784|gb|EFI55943.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp. MP5ACTX8] Length = 169 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+A +++ + YP R SA+IP+L+ AQ++ G+VS + +A LD+ + V Sbjct: 9 FSPETAARFDKLATIYPVKR--SALIPMLLYAQDEVGYVSDEVVAELAKRLDLLELDVRN 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CMLRG +L++ C++ + DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGFELLDHCKHTLGIGHKGVTPDGLFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP V + D ++DLTP +++ ++ + G+G ++ Sbjct: 126 VECIGACCWAPAVQVNYDFHDDLTPAKMDAVLADYREGRGKDVK 169 >gi|238788651|ref|ZP_04632443.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC 33641] gi|238723246|gb|EEQ14894.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q++ GWV AI +A+ Sbjct: 24 AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSHLKPEDIEKLLEQY 186 >gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16] gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16] Length = 167 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ ++L+ ++D Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDELKA 160 >gi|157371542|ref|YP_001479531.1| NADH dehydrogenase subunit E [Serratia proteamaculans 568] gi|157323306|gb|ABV42403.1| NADH-quinone oxidoreductase, E subunit [Serratia proteamaculans 568] Length = 183 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 16/186 (8%) Query: 1 MSVRRLAEEEFQ---------PSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLM 47 M ++ Q P S F S E + Y R +A I L Sbjct: 1 MHDQKDNHANNQALEPINAAAPQSGVDAFELSAEERDAIEHEKHHYEDPR--AASIEALK 58 Query: 48 RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107 Q+Q GWV AI +A +L + V +ATFY+Q PVG R ++ C + C + Sbjct: 59 IVQKQRGWVPDGAIHAIAELLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHIT 117 Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 G + + K+ KP DG + C G C P +MI +DT+ L PE +E Sbjct: 118 GYQGIQAAIEKKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIET 177 Query: 168 IIDAFS 173 +++ + Sbjct: 178 LLEQYQ 183 >gi|293395173|ref|ZP_06639459.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582] gi|291422350|gb|EFE95593.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582] Length = 183 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +F S E + Y R +A I L Q++ GWV AI +A++L + Sbjct: 27 DAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 84 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTGDGRF 143 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P +MI +DT+ L PE +E +++ + Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIENLLEQYQ 183 >gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu] Length = 161 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGACGDAPVLLVNNHKMCSFMSREKIDQLLEELSK 161 >gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42] gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY] gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42] gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY] Length = 163 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YP + QSAV+ L Q+++GWVS + V+A L M I V E+ Sbjct: 3 TEATKQRFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LR + + K+ +DG + ++ Sbjct: 63 TTFYNMYNQQPVG-KYKLAVCTNLPCQLRRGQDALHHLEKKLGISMGETTADGLFTLQQC 121 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178 EC GAC +AP++++ + + ++L++++D +G Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMDDDKLDQMVDGLRAAEGK 162 >gi|16263283|ref|NP_436076.1| NuoE2 NADH I chain E [Sinorhizobium meliloti 1021] gi|307304398|ref|ZP_07584149.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] gi|307318105|ref|ZP_07597541.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|17380452|sp|P56910|NUOE2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 2; AltName: Full=NADH dehydrogenase I subunit E 2; AltName: Full=NDH-1 subunit E 2 gi|14523960|gb|AAK65488.1| NuoE2 NADH:quinone oxidoreductase (chain E) [Sinorhizobium meliloti 1021] gi|306896146|gb|EFN26896.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti AK83] gi|306902600|gb|EFN33194.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti BL225C] Length = 168 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ATFY Sbjct: 4 REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F P+G R H+Q+C CML G E L+ + + DG + VEC G Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 AC AP++ +G D + +L RL+ ++++F + T ++R ++AP Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVTS-----VERAAAAP 166 >gi|94309876|ref|YP_583086.1| NADH dehydrogenase subunit E [Cupriavidus metallidurans CH34] gi|93353728|gb|ABF07817.1| NADH dehydrogenase chain E [Cupriavidus metallidurans CH34] Length = 168 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 5/166 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ L+M + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-KHKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS---TGQGDT 179 EC GAC +AP++++ ++ ++++ +++ +GD Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSEQKIDALVEELKSEAAAKGDK 168 >gi|227112324|ref|ZP_03825980.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 181 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 3/167 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A+ + ++F S+ + Y +R +A I L Q++ GWV AI +A Sbjct: 18 ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAE 75 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 76 LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ +TPE +E +++ + Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181 >gi|227326164|ref|ZP_03830188.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 181 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 3/167 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A+ + ++F S+ + Y +R +A I L Q++ GWV AI +A+ Sbjct: 18 ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAD 75 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ KP Sbjct: 76 LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ +TPE +E +++ + Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181 >gi|194366600|ref|YP_002029210.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia R551-3] gi|194349404|gb|ACF52527.1| NADH-quinone oxidoreductase, E subunit [Stenotrophomonas maltophilia R551-3] Length = 175 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ EGW++ I VA LD+ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V +C C L G E ++ C K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTADGRVYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC C APM++I +E LT E+++E++D Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174 >gi|114777365|ref|ZP_01452362.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1] gi|114552147|gb|EAU54649.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1] Length = 170 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FSE + E++ RYP + QSA++P+L AQE G++S + VA++L + ++V E Sbjct: 12 FSEARLAEIAELVKRYPGA--QSALMPVLYMAQEDFGYLSMDVQQHVADVLGLRLMQVRE 69 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT F+ P GT ++VC CML G +L+ + K DG + E Sbjct: 70 VVTFYTMFREKPCGT-YLLEVCTNAGCMLNGANELVAHMCETLGIKVGETTDDGLFTVAE 128 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 VEC GAC AP+V + +E +TPE ++ +I G Sbjct: 129 VECAGACGGAPVVQVNHTYHEKVTPETMDALITQMRADGG 168 >gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus denitrificans BC] gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans K601] gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus denitrificans BC] gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus denitrificans K601] Length = 163 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YPP + QSAV+ L Q+++GW+S+ + +A L M I V E+ Sbjct: 3 TEATKERFAREVAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LRG + + K+ DG + ++ Sbjct: 63 TTFYNMYNQQPVG-KYKLAVCTNLPCQLRGGNQALHHLEAKLGITMGETTQDGLFTLQQC 121 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178 EC GAC +AP +++ + ++L++++D +G Sbjct: 122 ECLGACADAPTMLVNDRHMCSFMENDKLDQLVDGLRAAEGK 162 >gi|253576870|ref|ZP_04854195.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251843737|gb|EES71760.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 174 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 EE V E+I ++ + A+IP+L Q+ G++ A+++V+ L M+ + + Sbjct: 17 DEERLHRVGEIIDQF--RQLPGALIPVLHEIQDLYGYLPEEALQIVSRELGMSMAEIYGV 74 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY+ F L P G ++VC T C ++G + +++ +++ +DG + + Sbjct: 75 ATFYSFFSLEPKGE-HIIRVCMGTACYIKGAQGVLDRLSQELNVPVQGTTADGKFTLDAT 133 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP++ IG+ + LTP + +I+ T Sbjct: 134 RCLGACGLAPVMTIGEKVHGRLTPNEIPKILKQMRT 169 >gi|302543440|ref|ZP_07295782.1| NADH dehydrogenase I, E subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461058|gb|EFL24151.1| NADH dehydrogenase I, E subunit [Streptomyces himastatinicus ATCC 53653] Length = 276 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 21/197 (10%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 EVI+RYP SR SA++PLL Q +EG V+R I A +LD+ V +ATFY Sbjct: 25 EADAAEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGIRFCAEVLDLTTAEVTAVATFY 82 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T ++ G V VC T C + G + + E ++ + DG ++ E +EC Sbjct: 83 TMYRRKASGD-YQVGVCTNTLCAVMGGDAIFEELQSHLELGNGETTEDGKVTLEHIECNA 141 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG------------------P 184 AC AP+VM+ + +++ T ++++D G+ T G P Sbjct: 142 ACDFAPVVMVNWEFFDNQTVGSAKQLVDDLRAGRTVTPTRGAPLCTFKETARILAGFPDP 201 Query: 185 QIDRISSAPAGGLTSLL 201 + + + + G SL Sbjct: 202 RPGSVEAGGSAGPASLT 218 >gi|160881919|ref|YP_001560887.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] gi|160430585|gb|ABX44148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] Length = 164 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 F+ ++E + VI + A++P+L +AQE G++ +++N LD+ Sbjct: 6 STVPFAGTKEQEAELISVIEELKSDK--GALMPILQKAQEIYGYLPIEVQTIISNTLDIP 63 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY+QF L P G + + VC T C ++G + K+ DG Sbjct: 64 LEKIYGVVTFYSQFSLLPKG-KFKISVCLGTACYVKGSGDIYNKLMEKLGIASGECTPDG 122 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S E C GAC AP++ + D Y L+ + L+ I+ ++ Sbjct: 123 KFSLEACRCIGACGLAPVLTVNDDVYGRLSVDDLDGILAKYA 164 >gi|238753751|ref|ZP_04615112.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473] gi|238707987|gb|EEQ00344.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473] Length = 187 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F S E + Y +R +A I L Q++ GWV AI +A++L + Sbjct: 31 AAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 88 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + K+ +P DG Sbjct: 89 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAAISKKLSIQPGQTTFDGRF 147 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DT+ DL PE +E++++ + Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSDLKPEEIEQLLEQY 186 >gi|238763929|ref|ZP_04624886.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC 33638] gi|238697897|gb|EEP90657.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC 33638] Length = 187 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 2 SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 +V LA +P++ F S E + Y +R +A I L Q+Q GWV Sbjct: 15 NVANLAVNAAEPAATIEAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 AI +A +L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 73 DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|238794604|ref|ZP_04638211.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC 29909] gi|238726090|gb|EEQ17637.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC 29909] Length = 187 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+Q GWV AI +A Sbjct: 24 AEPATTTEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|238920564|ref|YP_002934079.1| hypothetical protein NT01EI_2676 [Edwardsiella ictaluri 93-146] gi|238870133|gb|ACR69844.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 166 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S+ + + I Y R +A I L Q++ GWV AI+ +A +L + V Sbjct: 12 FVLSDSARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDPAIDAIAGVLGIPAADV 69 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R V+ C + C + G + + + +P DG + Sbjct: 70 EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLDIQPGETTFDGRFTL 128 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C P +MI D ++ LTPER E+++ + Sbjct: 129 LPTCCLGNCDKGPNMMIDDDLHDHLTPERAIELLERYK 166 >gi|238759965|ref|ZP_04621118.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236] gi|238701792|gb|EEP94356.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236] Length = 187 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 6 LAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 LA +P++ F S E + Y +R +A I L Q+Q GWV AI Sbjct: 19 LAVNAAEPATTVEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAI 76 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A +L + V +ATFY+Q PVG R ++ C + C + G + + K+ Sbjct: 77 HAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLS 135 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +P DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 136 IQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|300723693|ref|YP_003713000.1| NADH dehydrogenase I subunit E [Xenorhabdus nematophila ATCC 19061] gi|297630217|emb|CBJ90868.1| NADH dehydrogenase I chain E [Xenorhabdus nematophila ATCC 19061] Length = 181 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 3/165 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + P F S E + + Y R +A I L Q+Q GWV AI +A +L Sbjct: 20 DAQTPDEFVLSAEERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVL 77 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + + + ++ +P Sbjct: 78 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQGVQAAIESHLNIRPGQTT 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +DG + C G C P +MI +DT+ + PE +E++++ + Sbjct: 137 ADGRFTLLPTCCLGNCDKGPAMMIDEDTHCYVRPEEIEKLLEQYQ 181 >gi|148270045|ref|YP_001244505.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170288729|ref|YP_001738967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|281412074|ref|YP_003346153.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] gi|147735589|gb|ABQ46929.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170176232|gb|ACB09284.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|281373177|gb|ADA66739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] Length = 162 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + I + A+I +L +AQE G++ +E +++ LD+ +V + Sbjct: 6 EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + ++VC T C ++G +++ E ++ P SDG S V Sbjct: 66 TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 124 Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174 C GAC AP+VM+ D Y +TP+ + +II + Sbjct: 125 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKR 160 >gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4] gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4] Length = 256 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 6/181 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 VR A + E + +++RYP +R SA++PLL Q ++G ++ A IE Sbjct: 20 VRPDARRTYPDDVL---ERLRADADLIVARYPQAR--SALLPLLHLVQAEDGHLTPAGIE 74 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A ++D++ V+ +ATFY+ ++ +P G V VC T C + G +++ R+ + Sbjct: 75 FCALVVDLSPAEVMAVATFYSMYRRTPTGD-YLVGVCTNTLCAVMGGDEIYADLRDHLGL 133 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 DG ++ E +EC AC AP+VMI + ++D TP+ ++D G+ T Sbjct: 134 DGPGTTDDGRITLERIECNAACDYAPVVMINWEFFDDQTPDSARRVVDDLRAGRPVTPTR 193 Query: 183 G 183 G Sbjct: 194 G 194 >gi|326202422|ref|ZP_08192291.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987540|gb|EGD48367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 178 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 3/170 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + +P+ +E + I ++ A+I +L +AQ G++ R VA L Sbjct: 8 DVMEPAERKPPKEKFDQLEAYIESLETTK--GALIEILHKAQNIFGYLPRDVQLFVARKL 65 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V + +FY+ F P G V VC T C +RG +K+IE + K+ + Sbjct: 66 GIPGAEVYGVVSFYSYFTTKPGGL-HTVSVCMGTACFVRGADKVIEKFKEKLGIESNETT 124 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 DG + ++V C GAC AP+VM+ + + E +++II+ + + + + Sbjct: 125 KDGLFTLKDVRCIGACGLAPVVMVDDKVFGRVKVEDVDDIIEMYRSNKEE 174 >gi|256831783|ref|YP_003160510.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM 20603] gi|256685314|gb|ACV08207.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM 20603] Length = 269 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 7/177 (3%) Query: 12 QPSSFSFSEESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 +P + + E+ + ++ RYP +R SA++P+L Q +G+V+R I+ A+ Sbjct: 9 KPRAVGYEPETLEQLCTDAATIMGRYPNAR--SALLPMLHLVQSVDGYVTRRGIQFCADQ 66 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 LD+ V +ATFYTQ++ P G V VC T C + G + + E + Sbjct: 67 LDLTAAEVSAVATFYTQYKRRPNGD-YTVGVCTNTLCAVMGGDAIYEELSTYLGIGHDET 125 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 DG ++ E VEC C AP+VM+ + +++ TP+ +++I+D G T GP Sbjct: 126 TDDGKITLERVECNAGCDYAPVVMVNWEFFDNQTPDSMKKIVDELRLGNDVTPSRGP 182 >gi|208780264|ref|ZP_03247606.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida FTG] gi|254375045|ref|ZP_04990525.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548] gi|151572763|gb|EDN38417.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548] gi|208743913|gb|EDZ90215.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida FTG] Length = 162 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLGIKPGETTEDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase chain E [Burkholderia rhizoxinica HKI 454] gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 165 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP QSAV+ L AQ ++GW+S ++ VA+ L M I V E+ Sbjct: 10 SAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQEV 69 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYT ++ +PVG + +C PC L G ++ E + K+ DG + +E Sbjct: 70 ATFYTMYETAPVGQ-HKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEG 128 Query: 139 ECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 EC GAC +AP+V++ ++ E+++++++ S Sbjct: 129 ECFGACGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 165 >gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001] gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001] Length = 161 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134] gi|72118081|gb|AAZ60344.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] Length = 168 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ I++YP + QSAV+ L AQ + GWVS ++ VA+ LDM + V E Sbjct: 4 LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEE 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + VC PC L G E+ E + K+ +DG + +E Sbjct: 64 VATFYNMYDTKPVG-RFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ ++ ++L+ ++D Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDEL 158 >gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis C4D1M] Length = 161 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|85059576|ref|YP_455278.1| NADH dehydrogenase subunit E [Sodalis glossinidius str. 'morsitans'] gi|84780096|dbj|BAE74873.1| NADH dehydrogenase I subunit E [Sodalis glossinidius str. 'morsitans'] Length = 177 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +F S E + Y +R +A I L Q+ GWV AI +A +L + Sbjct: 21 ETFELSREEREAIKHEKHHYEDAR--AASIEALKIVQKNRGWVPDGAIAAIAQVLGIPGS 78 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ KP DG Sbjct: 79 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQSLNIKPGQTTPDGRF 137 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P +M+ DT+ LTPE + +++ + Sbjct: 138 TLLPTCCLGNCDKGPTMMVDDDTHLHLTPEGIGPLLEQYR 177 >gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 610 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 4/174 (2%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67 E +P S + E + EV + + + V+P+L Q+ G W+ A+++VA Sbjct: 3 ELKKPVSAELTSEQVKRIREVCQQ--LGKVKGKVLPILHAVQDICGNWLPLEALQLVAKE 60 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L++ Y + + TFY+ + ++P G R +++C + PC + G E ++E + ++ + Sbjct: 61 LEIPYGYLYGVLTFYSMYSVTPRG-RYIIRMCESAPCHVNGAENILEALKEELGVEVGGT 119 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 SDG + E C G C AP + I + + +LT +++EI+D + G+ R Sbjct: 120 TSDGLFTLELTACLGTCEVAPAMQINEVVFGNLTGAKVKEILDNYRAGKEVDYR 173 >gi|206901131|ref|YP_002250632.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum H-6-12] gi|206740234|gb|ACI19292.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum H-6-12] Length = 162 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 FSE + V ++ R+ ++ ++I +L QE+ G++ + A+E+V+ L + + Sbjct: 6 KFSEYAQKEVERILDRFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F+L P G + +++C T C ++G L+ + K DG S + Sbjct: 64 GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-MGLKEGKVTEDGYFSLD 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 V C GAC AP +MI ++ Y LTP++L+++I+ F Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159 >gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003] gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003] Length = 161 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22] gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 287 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 17 SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 F ++ + EV++RYP SR SA++PLL Q +EG V+R + A++L + Sbjct: 19 DFPDDVRARLERDAAEVVARYPDSR--SALLPLLHLMQAEEGHVTRTGVRFCADVLGLTT 76 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFY+ ++ P G V VC T C + G + + E ++ + DG Sbjct: 77 AEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGK 135 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 ++ E +EC AC AP+VM+ + +++ T + + ++D G G Sbjct: 136 VTLEHIECNAACDFAPVVMVNWEFFDNQTVDSAKRLVDDLRDGAEVAPTRG 186 >gi|257452668|ref|ZP_05617967.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|257466529|ref|ZP_05630840.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917684|ref|ZP_07913924.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|317059208|ref|ZP_07923693.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313684884|gb|EFS21719.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313691559|gb|EFS28394.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 160 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + EVI+ + A+IP+L +AQE G++ + ++ ++ R+ I TFY Sbjct: 10 KKLEEVIN--EVEEKEMAIIPILHKAQEIFGYLPEEVQQFISQKTNIPIGRIYGIVTFYN 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F +P G + + VC T C +RG +K+++ + ++ DG S + + C GA Sbjct: 68 FFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGA 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 C AP++MI D + L E+++EI+ + + Sbjct: 127 CGLAPVMMIDSDVHGKLEKEQVKEILSFYRNQKA 160 >gi|169247657|gb|ACA51657.1| HydC [Thermoanaerobacterium saccharolyticum] Length = 160 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 FSEE+ + +VI + + ++I ++ AQE G++ + ++ +++ + Sbjct: 7 KFSEENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + VC T C ++G +++ + K+ DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +E+I+ F Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159 >gi|307131811|ref|YP_003883827.1| NADH:ubiquinone oxidoreductase subunit E [Dickeya dadantii 3937] gi|306529340|gb|ADM99270.1| NADH:ubiquinone oxidoreductase, chain E [Dickeya dadantii 3937] Length = 176 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 3/168 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 A + F S+ + Y +R +A I L Q+ GWV AI+ ++ Sbjct: 12 DAPAQAASDIFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKHRGWVPDGAIDAIS 69 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 +L + V +ATFY+Q PVG R ++ C + C + G + + K++ KP Sbjct: 70 EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPG 128 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + C G C P +MI +DT+ L P+ ++ +++ + Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDIDSLLEQYQ 176 >gi|332799829|ref|YP_004461328.1| NADH-quinone oxidoreductase subunit E [Tepidanaerobacter sp. Re1] gi|332697564|gb|AEE92021.1| NADH-quinone oxidoreductase, E subunit [Tepidanaerobacter sp. Re1] Length = 162 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 4/156 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F+++ + E++ +Y + ++ L AQ G++ E+VA LD+ V Sbjct: 10 EFTDK-LKQIEEMLKKYKGQK--GTLLQALQEAQNIMGYLPIEVQEMVAETLDITLSEVY 66 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 TFY+ F L P G + ++ C T C +RG EK+++ + ++ + DG S Sbjct: 67 STITFYSFFSLKPKG-KYQIRTCLGTACYVRGAEKVLDRLKTELGIEVGDTTDDGKFSLN 125 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP ++I + Y LTP+++ +I+ F Sbjct: 126 ACRCIGACGLAPAIIINDEVYGRLTPDKIPDILKKF 161 >gi|302387718|ref|YP_003823540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium saccharolyticum WM1] gi|302198346|gb|ADL05917.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium saccharolyticum WM1] Length = 164 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + Q F+ ++E I + EVI+ ++ +++P++ +AQE G++ ++++ Sbjct: 4 KTQGVQFNGTKEQEIALKEVIALLRDTK--GSLMPIMQKAQEIYGYLPIEVQTMISDETG 61 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + ++ +ATFY QF L P G + + VC T C ++G + + Sbjct: 62 IPLEKIYGVATFYAQFALQPKG-KYQISVCLGTACYVKGSGDIFHKLEEILGITNGECTP 120 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++M+ + Y L+ + + +I+ + Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMVNGEVYGRLSADDVPDILAKY 163 >gi|289578039|ref|YP_003476666.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter italicus Ab9] gi|289527752|gb|ADD02104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter italicus Ab9] Length = 160 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F EE + + ++I ++ AQE G++ ++ +++ + Sbjct: 7 KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + +C T C +RG ++E + K+ + DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ ++EI+ F Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159 >gi|187930992|ref|YP_001890976.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711901|gb|ACD30198.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 162 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVNKVFYENLTIEKVNQIIDSL 161 >gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630] gi|255102608|ref|ZP_05331585.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-63q42] gi|255308434|ref|ZP_05352605.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile ATCC 43255] gi|255657358|ref|ZP_05402767.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-23m63] gi|296451828|ref|ZP_06893547.1| Fe-hydrogenase [Clostridium difficile NAP08] gi|296879776|ref|ZP_06903750.1| Fe-hydrogenase [Clostridium difficile NAP07] gi|115252465|emb|CAJ70308.1| putative iron-only hydrogenase,electron-transferring subunit HymA-like [Clostridium difficile] gi|296259307|gb|EFH06183.1| Fe-hydrogenase [Clostridium difficile NAP08] gi|296429247|gb|EFH15120.1| Fe-hydrogenase [Clostridium difficile NAP07] Length = 165 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + A+I +L AQ G++ + VA L +A +V + TFY+ F PVG + + Sbjct: 25 KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C ++G +K++ ++ K SD S E + C GAC AP+V + Y Sbjct: 84 VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143 Query: 158 EDLTPERLEEIIDAFSTGQ 176 + P+++ EI+D + + Sbjct: 144 GKVKPDQVSEILDTYRELE 162 >gi|254977027|ref|ZP_05273499.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-66c26] gi|255094354|ref|ZP_05323832.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile CIP 107932] gi|255316107|ref|ZP_05357690.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-76w55] gi|255518768|ref|ZP_05386444.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-97b34] gi|255651946|ref|ZP_05398848.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-37x79] gi|260684910|ref|YP_003216195.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260688568|ref|YP_003219702.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|306521695|ref|ZP_07408042.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile QCD-32g58] gi|260211073|emb|CBA66443.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260214585|emb|CBE07150.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] Length = 165 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + A+I +L AQ G++ + VA L +A +V + TFY+ F PVG + + Sbjct: 25 KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C ++G +K++ ++ K SD S E + C GAC AP+V + Y Sbjct: 84 VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143 Query: 158 EDLTPERLEEIIDAFSTGQ 176 + P+++ EI+D + + Sbjct: 144 GKVKPDQVSEILDTYRELE 162 >gi|238798407|ref|ZP_04641888.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC 43969] gi|238717721|gb|EEQ09556.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC 43969] Length = 187 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+Q GWV AI +A+ Sbjct: 24 AESATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|123441679|ref|YP_001005663.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088640|emb|CAL11435.1| NADH dehydrogenase I chain E [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 172 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+Q GWV AI +A Sbjct: 9 AEPAITAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 66 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 67 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 125 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 171 >gi|320107664|ref|YP_004183254.1| NADH-quinone oxidoreductase subunit E [Terriglobus saanensis SP1PR4] gi|319926185|gb|ADV83260.1| NADH-quinone oxidoreductase, E subunit [Terriglobus saanensis SP1PR4] Length = 169 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+A + +++ YP R SA++P+L+ AQ+ G+VS A + +A LD+ + V Sbjct: 9 FSPETAARFDHLVTIYPVRR--SALVPMLLYAQDDIGYVSDAVVAEIAQRLDLLELDVRG 66 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + ++Y+ + P G + +VQVC CML G L++ C+ K+ +DG S EE Sbjct: 67 VLSYYSMLRTKPAG-KYNVQVCTNISCMLVGGYDLLDHCKAKLGIGHKGVTADGLFSLEE 125 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 VEC GAC AP + + D +E++T +++ I++ ++ G+G ++ Sbjct: 126 VECIGACCWAPAIQVNYDFHENVTNIKMDAILEDYAAGRGKDVK 169 >gi|319943352|ref|ZP_08017634.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC 51599] gi|319743167|gb|EFV95572.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC 51599] Length = 173 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P S ++ ++ I++YP + QSAV+ L AQ++ GWVS A IE VA+ L M Sbjct: 8 PVKRLLSAQAYQLIDREIAKYPADQKQSAVMGALTIAQDEVGWVSPAVIEDVADYLSMPP 67 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 I V E+ATFY + L VGT + VC PC LR +K E + K+ DG Sbjct: 68 IAVYEVATFYNMYNLEEVGTW-KIGVCTCLPCALREGDKAGEYLKQKLGIDFGETTPDGR 126 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFSTGQ 176 + E EC G+C +AP+ +I E + +L+ +ID + Sbjct: 127 FTLIETECLGSCADAPICLINDKRVESFMDNAKLDALIDELRNKE 171 >gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC 23834] gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC 23834] Length = 157 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP R +SA++ L AQ ++GW+S IE VA+ + + ++ E Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ SDG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTSDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156 >gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815] gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum STM815] Length = 161 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L QE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ PVG + + +C PC L G + E + K+ DG + Sbjct: 63 ATFYTMYETKPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGRFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|270262811|ref|ZP_06191082.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13] gi|270043495|gb|EFA16588.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13] Length = 183 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +F S E + Y R +A I L Q+Q GWV AI +A +L + Sbjct: 27 DAFVLSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPAS 84 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + K+ KP DG Sbjct: 85 DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRF 143 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P +MI +DT+ L PE +E +++ + Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183 >gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703] gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703] Length = 157 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +++ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTAEAIDKKLAELK 157 >gi|330810466|ref|YP_004354928.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378574|gb|AEA69924.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 164 >gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102] gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102] Length = 157 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +++ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157 >gi|320540449|ref|ZP_08040099.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia symbiotica str. Tucson] gi|320029380|gb|EFW11409.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia symbiotica str. Tucson] Length = 183 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S E + Y R +A I L Q++ GWV AI +A +L + Sbjct: 28 AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIAQVLGIPASD 85 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + K++ KP DG + Sbjct: 86 VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEQKLNIKPGQTTVDGRFT 144 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C P +MI +DT+ L PE +E +++ + Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183 >gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor [Neisseria flavescens SK114] gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor [Neisseria flavescens SK114] Length = 157 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +++ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157 >gi|325921407|ref|ZP_08183264.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865] gi|325548165|gb|EGD19162.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865] Length = 175 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 SE++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSEKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624] gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624] Length = 312 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +SV R F F+E++ ++E++ RYPP ++AV+P+L Q Q G+ S + Sbjct: 136 LSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISV 195 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA +L+M +RV E+ATFYT + L Sbjct: 196 MNEVARLLEMPPMRVYEVATFYTMYNL--------------------------------- 222 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQG 177 EC GACVNAPMV I D YEDLTPE ++ ++ A TG Sbjct: 223 ------------------ECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSA 264 Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 PGP R + + GLT+L D ++D + Sbjct: 265 KVPAPGPLSGRQTCENSAGLTNLRDPVWDPETMMRQDGAL 304 >gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acidaminophilum] Length = 157 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F+EE+ +++VI+ Y A++P+L AQ+ G V+ + ++ L++ + Sbjct: 6 FTEENFKKLDQVIAEYKG--KPGALMPVLHEAQKIFGCVALEVQKKISEGLNIPLAEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+QF L P G V VC T C ++G + +I+ + + ++DG + Sbjct: 64 VATFYSQFSLEPKGD-YVVGVCLGTACYVKGSQSIIDRVCKDLDLEVGKTSADGKFTVVA 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ I +D Y + + + I+ + Sbjct: 123 TRCVGACGLAPVMTINEDVYGKIVADDVPGILAKY 157 >gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400] gi|296160633|ref|ZP_06843448.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1] gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400] gi|295889159|gb|EFG68962.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1] Length = 161 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ +++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEELSK 161 >gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis N1568] Length = 157 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156 >gi|91789112|ref|YP_550064.1| NADH-quinone oxidoreductase subunit E [Polaromonas sp. JS666] gi|91698337|gb|ABE45166.1| NADH dehydrogenase subunit E [Polaromonas sp. JS666] Length = 166 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 2/161 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 SE++ + +++YP + QSAV+ L QE++G+VS + ++VA L M I V E+ Sbjct: 7 SEQTKARFDREVAKYPADQKQSAVMACLTIVQEEQGFVSAESEKLVAEYLGMTPIAVHEV 66 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LR + ++ +K+ +DG + ++ Sbjct: 67 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGARALKHLEHKLGISMGQTTADGLFTLQQS 125 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178 EC GAC ++P++++ ++ E+L+++ID + + Sbjct: 126 ECLGACADSPVMLVNDLTMCSFMSDEKLDQLIDGLKSAEAK 166 >gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 157 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELK 157 >gi|166712610|ref|ZP_02243817.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzicola BLS256] gi|289665177|ref|ZP_06486758.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667376|ref|ZP_06488451.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325915543|ref|ZP_08177854.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937] gi|325538259|gb|EGD09944.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937] Length = 175 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|237737512|ref|ZP_04567993.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] gi|229419392|gb|EEO34439.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] Length = 165 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 1/139 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 +S++I +L +AQE G++ E +A +++ +V + +FY F + P G + + Sbjct: 27 KKSSLIIILHKAQEIFGYIPEEVQEFIAEKIEVPVSKVYGVVSFYNFFSMEPKG-KYPIS 85 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C +RG EK++E + ++ K DG S + + C GAC AP++++GKD + Sbjct: 86 VCTGTACYVRGAEKILEALQKELGLKLGGVTEDGLFSLDSLRCVGACGLAPVMLVGKDVH 145 Query: 158 EDLTPERLEEIIDAFSTGQ 176 + PE +++II+ + + Sbjct: 146 GKVKPEDVKKIIENYKNLE 164 >gi|218662328|ref|ZP_03518258.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli IE4771] Length = 170 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 AC AP++ +G D + DL R++ ++D T G D S+AP G Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169 >gi|229591256|ref|YP_002873375.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens SBW25] gi|312961689|ref|ZP_07776187.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6] gi|229363122|emb|CAY50141.1| NADH dehydrogenase I chain E [Pseudomonas fluorescens SBW25] gi|311283948|gb|EFQ62531.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6] Length = 165 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNKLGIGLGQTTPD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTQLLEGY 164 >gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8] gi|4981988|gb|AAD36494.1|AE001794_10 Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8] Length = 164 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V E++ +Y + +I +L+ QE ++ I V+ + + ++ +A Sbjct: 5 ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G ++++ + P + D S ++V Sbjct: 63 TFYAQFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP+++I + Y +LT ++++EI+ + ++ Sbjct: 122 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 161 >gi|257463176|ref|ZP_05627576.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium sp. D12] gi|317060767|ref|ZP_07925252.1| NADH dehydrogenase [Fusobacterium sp. D12] gi|313686443|gb|EFS23278.1| NADH dehydrogenase [Fusobacterium sp. D12] Length = 160 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S + E I + A+IP+L +AQE G++ + +A +++ R+ I TF Sbjct: 8 SFKKLEEAID--EVEDKEMAIIPILHKAQEIFGYLPEEVQQFIAEKMEIPIGRIYGIVTF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F +P G + + VC T C +RG +K+++ + ++ DG S + + C Sbjct: 66 YNFFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCI 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP++MI D + L E++ EI+ + + Sbjct: 125 GACGLAPVMMIDSDVHGKLEKEQVAEILSFYRNQE 159 >gi|218780401|ref|YP_002431719.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761785|gb|ACL04251.1| NADH-quinone oxidoreductase, E subunit-like protein (NuoE) [Desulfatibacillum alkenivorans AK-01] Length = 161 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + + +I Y + +IPLL QE+ G+V +IE +A L++ V + TF Sbjct: 7 DMVKLRGIIGEYKDVKW--GLIPLLQAVQEEFGYVPPESIEPIAEALNIPPSEVQGVVTF 64 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F L P G + ++VC T C ++G + ++ + +H + + D S E V C Sbjct: 65 YAGFSLKPKG-KYVLRVCRGTACHVKGGQSILSSVKKHLHLEEGETSEDFQFSLETVACL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP +M+ + + L+P+++ +I + +GD Sbjct: 124 GACFVAPAMMVNRTYFGKLSPDKVNNVIGQYEKTEGD 160 >gi|313672281|ref|YP_004050392.1| NADH dehydrogenase subunit e [Calditerrivibrio nitroreducens DSM 19672] gi|312939037|gb|ADR18229.1| NADH dehydrogenase subunit E [Calditerrivibrio nitroreducens DSM 19672] Length = 164 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++E+ +Y + A IP+L + QE G++S+ IE + L+M+ + + TF Sbjct: 12 DLSKIDEICEKYKG--KKGATIPVLQQVQEHYGYLSKEMIERIGENLNMSPHTLYGVLTF 69 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF +P G + ++VC T C ++G ++ EV + + D + EEV C Sbjct: 70 YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVFEEFGIRNGETTPDIKFTLEEVSCI 128 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP++MI TY +LTPE+ I ++ Q Sbjct: 129 GACGMAPVIMINDKTYGNLTPEQARSIFKEYAQKQ 163 >gi|281412805|ref|YP_003346884.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [Thermotoga maritima MSB8] gi|281373908|gb|ADA67470.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga naphthophila RKU-10] Length = 161 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V E++ +Y + +I +L+ QE ++ I V+ + + ++ +A Sbjct: 2 ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G ++++ + P + D S ++V Sbjct: 60 TFYAQFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP+++I + Y +LT ++++EI+ + ++ Sbjct: 119 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 158 >gi|56707215|ref|YP_169111.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89257086|ref|YP_514448.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica LVS] gi|110669685|ref|YP_666242.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis FSC198] gi|115315443|ref|YP_764166.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica OSU18] gi|134301250|ref|YP_001121218.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156503300|ref|YP_001429365.1| NADH dehydrogenase I, subunit E [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009478|ref|ZP_02274409.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella tularensis subsp. holarctica FSC200] gi|254368322|ref|ZP_04984340.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica 257] gi|254368969|ref|ZP_04984982.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp. holarctica FSC022] gi|254371431|ref|ZP_04987432.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|290952993|ref|ZP_06557614.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313813|ref|ZP_06804386.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica URFT1] gi|54114135|gb|AAV29701.1| NT02FT1740 [synthetic construct] gi|56603707|emb|CAG44668.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144917|emb|CAJ80265.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica LVS] gi|110320018|emb|CAL08051.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130342|gb|ABI83529.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134049027|gb|ABO46098.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp. tularensis WY96-3418] gi|134254130|gb|EBA53224.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. holarctica 257] gi|151569670|gb|EDN35324.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis FSC033] gi|156253903|gb|ABU62409.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121890|gb|EDO66060.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp. holarctica FSC022] gi|282158323|gb|ADA77714.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN] gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN] Length = 163 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 2/161 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YPP + QSAV+ L Q++ G+VS A+ +A L M I V E+ Sbjct: 3 TEATKARFAREVAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC+LR K +E K+ DG + ++ Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCLLRDGGKALEHLEQKLGISMGETTPDGLFTLQQC 121 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178 EC GAC +AP++++ + + ++L++++D+ + Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMGNDKLDQLVDSLRAAEAK 162 >gi|323704273|ref|ZP_08115852.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323536339|gb|EGB26111.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 160 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 FS+E+ + +VI + + ++I ++ AQE G++ + ++ +++ + Sbjct: 7 KFSQENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + VC T C ++G +++ + K+ DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +E+I+ F Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159 >gi|253996969|ref|YP_003049033.1| NADH-quinone oxidoreductase subunit E [Methylotenera mobilis JLW8] gi|253983648|gb|ACT48506.1| NADH-quinone oxidoreductase, E subunit [Methylotenera mobilis JLW8] Length = 157 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E+ ++ +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E Sbjct: 2 LSPEATTKIDYELTKYPADQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + LSPVG + V +C CMLRG ++++ ++K+ DG +E Sbjct: 62 VATFYNMYDLSPVG-KYKVTICTNISCMLRGSDEIVNHLQSKLGVGFNEVTPDGKFCLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 EC G C AP++ + + +E LT ++++ II+ Sbjct: 121 GECMGCCGGAPLMHVNNTEMHEFLTTDKVDAIIEGLK 157 >gi|21231956|ref|NP_637873.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767917|ref|YP_242679.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. 8004] gi|188991033|ref|YP_001903043.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris str. B100] gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573249|gb|AAY48659.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732793|emb|CAP50987.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. campestris] Length = 175 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51] gi|89336165|dbj|BAE85760.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51] Length = 160 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++++++ + R + A+IP+L AQ G++ I+ ++ L + +V + TFY Sbjct: 13 EEQLDQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+L+P+G R + VC T C +RG K++E K DG + E V C G Sbjct: 71 AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AC AP++ I + + L +++ I+ + Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160 >gi|238784997|ref|ZP_04628995.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC 43970] gi|238714113|gb|EEQ06127.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC 43970] Length = 187 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 AE F S E + Y +R +A I L Q+ GWV AI +A Sbjct: 24 AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKGRGWVPDGAIHAIAE 81 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +L + V +ATFY+Q PVG R ++ C + C + G + + K+ +P Sbjct: 82 VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ L PE +E++++ + Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|167037868|ref|YP_001665446.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040765|ref|YP_001663750.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter sp. X514] gi|256750975|ref|ZP_05491858.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300914803|ref|ZP_07132119.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561] gi|307723963|ref|YP_003903714.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter sp. X513] gi|320116285|ref|YP_004186444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855005|gb|ABY93414.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter sp. X514] gi|166856702|gb|ABY95110.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750085|gb|EEU63106.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300889738|gb|EFK84884.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561] gi|307581024|gb|ADN54423.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter sp. X513] gi|319929376|gb|ADV80061.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 160 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F EE + + ++I ++ AQE G++ ++ +++ + Sbjct: 7 KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + +C T C +RG ++E + K+ + DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ ++EI+ F Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159 >gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616] gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616] gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M] gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2] gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1] gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158] gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158] gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans ATCC 17616] gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616] gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1] gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2] gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M] Length = 161 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLVNNHKMCSFMSREKIDQLLEELSK 161 >gi|77918445|ref|YP_356260.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter carbinolicus DSM 2380] gi|77544528|gb|ABA88090.1| formate dehydrogenase gamma subunit [Pelobacter carbinolicus DSM 2380] Length = 163 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E++ Y A+IP+L AQ+ G++ +E ++ L + + V + TFY+QF L Sbjct: 21 ELLEHYRE--YDGALIPVLQGAQDIYGYLPGEVLETISKELKIPFSEVFGVVTFYSQFHL 78 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R ++VC T C +RG K+ E + + D + E V C GAC A Sbjct: 79 KPRG-RNIIRVCLGTACHVRGGSKIFEGLKEILGVDNGGTTEDLRFTLESVACIGACGLA 137 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++MI DT+ LT + L++I++ + Sbjct: 138 PVIMINDDTHGRLTNDGLDKILEQY 162 >gi|304413374|ref|ZP_07394847.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella insecticola LSR1] gi|304284217|gb|EFL92610.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella insecticola LSR1] Length = 172 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 1 MSVRRLAEEEFQ--PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58 M+ ++ E PS F S E + + Y +R +A I L Q++ GWV Sbjct: 1 MNDQKNHLEGMAITPSDFVLSAEEQAAIEQEKQHYEDAR--AATIEALKIVQKKRGWVPD 58 Query: 59 AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 AI +A IL + V +ATFY+Q PVG R ++ C + C + G +++ V Sbjct: 59 GAIYAIAEILAIPASDVEGVATFYSQIFRRPVG-RHVIRYCDSVVCYITGYQEIQTVLEK 117 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 K+ KP +DG + C G C P +MI +DT+ L PE +E +++ + Sbjct: 118 KLSIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLKPEDIEPLLERY 171 >gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens NRL30031/H210] gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens NRL30031/H210] Length = 157 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156 >gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243] gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344] gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b] gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264] gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1] gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229] gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668] gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247] gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a] gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305] gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20] gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH] gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4] gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98] gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14] gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91] gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9] gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210] gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894] gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177] gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112] gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215] gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576] gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan 9] gi|237811586|ref|YP_002896037.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia pseudomallei MSHR346] gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei GB8 horse 4] gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b] gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399] gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1655] gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei S13] gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH] gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU] gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1710a] gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 406e] gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280] gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264] gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei K96243] gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344] gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia pseudomallei 1710b] gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264] gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1] gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229] gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 668] gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a] gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247] gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305] gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH] gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU] gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280] gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 406e] gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399] gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei S13] gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1655] gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576] gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan 9] gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia pseudomallei MSHR346] gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei GB8 horse 4] gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b] gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20] gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei 1710a] Length = 161 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161 >gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC 19624] gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC 19624] Length = 181 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 2/167 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S + ++ +++YP + QSAV+ L Q+++GWVS A +A L M + V E Sbjct: 13 LSAATLARFSKEVAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHE 72 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY + PVG + + VC PC LR +K + K+ +DG + +E Sbjct: 73 VTTFYNMYNQRPVG-KFKLNVCTNLPCQLRDGQKALNHLAAKLGISKGETTADGLFTLQE 131 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPG 183 EC GAC +AP++++ T ++ ++L+++ID G + G Sbjct: 132 SECLGACADAPVMLVNDRTMCSFMSGDKLDQLIDGLKGVAGGSDSKG 178 >gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3] gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3] Length = 161 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ VI++YP + QSAV+ L AQ++ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG S Sbjct: 63 ATFYTMYELKPVG-KHKLTLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGRFSL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161 >gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria meningitidis alpha153] Length = 157 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156 >gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685] gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685] Length = 157 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +++ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLTELK 157 >gi|302391755|ref|YP_003827575.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide dehydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302203832|gb|ADL12510.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide dehydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + ++ Y + +IP+L AQ++ G++ + + ++ LD+ + V +A Sbjct: 13 EEYLQPLKGILKAYAGKKED--LIPVLQAAQQEYGYLPQPVLREISKELDIFFSEVYGVA 70 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L P G ++VC T C +RG +++++ + ++ D + E V Sbjct: 71 TFYSQFHLEPRGE-NIIRVCMGTACHVRGGDEILDKVKAELGIDAGETTDDQKFTLESVA 129 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++ + DT+ L P+++ +I+D + Sbjct: 130 CIGACGLAPVMTVNDDTHGLLVPDKIPDILDQYR 163 >gi|221068608|ref|ZP_03544713.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni KF-1] gi|264677202|ref|YP_003277108.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni CNB-2] gi|299530746|ref|ZP_07044161.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44] gi|220713631|gb|EED68999.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni KF-1] gi|262207714|gb|ACY31812.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni CNB-2] gi|298721262|gb|EFI62204.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44] Length = 163 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YP + QSAV+ L Q+++GWVS+ + V+A +L MA I V E+ Sbjct: 3 TEATRERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSQESEAVIAEVLGMAEIAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LR K + +K+ K DG + ++ Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGYKALHHLEHKLGIKMGETTKDGLFTLQQS 121 Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ ++ E+L+E++D +G Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELVDGLRAAEGKA 163 >gi|253989003|ref|YP_003040359.1| NADH dehydrogenase subunit E [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780453|emb|CAQ83615.1| nadh dehydrogenase i chain e (nadh-ubiquinone oxidoreductase chain 5 (nuo5) [Photorhabdus asymbiotica] Length = 182 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 3/164 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E ++F S E + + Y R +A I L Q+ GWV AI +A++L Sbjct: 21 ESQAKANFVLSVEEHDAIEQEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + + ++ P Sbjct: 79 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ + PE +E++++ + Sbjct: 138 QDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVKPEEIEKLLEQY 181 >gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1] gi|237877333|gb|ACR29666.1| ATP synthase subunit E [Burkholderia glumae BGR1] Length = 161 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ V+++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG S Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFSL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161 >gi|157363817|ref|YP_001470584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] gi|157314421|gb|ABV33520.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] Length = 159 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + V E++ ++ + +I +L+ Q+ + + +A L++ ++ + Sbjct: 2 ERTFEKVEEILKKH--QYKKENLIRILLDVQKNYRHLPEDVVNYIAVALELPPAKIFGVG 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L P G + VC T C + G L++ +++ KP D S ++V Sbjct: 60 TFYSQFSLKPKGE-YTILVCDGTACHMEGSLSLLKAIEEELNIKPGEVTRDLKFSVDQVG 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C GAC AP ++I + Y +LTPE++++II G+ Sbjct: 119 CLGACALAPAMVINDEVYGNLTPEKVKDIIRKLKEGE 155 >gi|121604334|ref|YP_981663.1| NADH-quinone oxidoreductase subunit E [Polaromonas naphthalenivorans CJ2] gi|120593303|gb|ABM36742.1| NADH dehydrogenase subunit E [Polaromonas naphthalenivorans CJ2] Length = 165 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 2/160 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 SE++ + +++YP S+ QSAV+ L Q++ G+VS + ++VA L MA I V E+ Sbjct: 7 SEQTKALFDREVAKYPTSQKQSAVMACLQIVQQERGFVSAESEKLVAEYLGMAPIAVHEV 66 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LR K ++ +K+ DG + ++ Sbjct: 67 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGAKALQHLEHKLGVAMGETTKDGMFTLQQS 125 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177 EC GAC ++P++++ ++ E+L+++ID + + Sbjct: 126 ECLGACADSPVMLVNDIHMCSFMSNEKLDQLIDGLKSAEA 165 >gi|254373578|ref|ZP_04989064.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|151571302|gb|EDN36956.1| NADH dehydrogenase I [Francisella novicida GA99-3549] Length = 162 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|118498237|ref|YP_899287.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. novicida U112] gi|194324421|ref|ZP_03058194.1| NADH-quinone oxidoreductase, e subunit family [Francisella tularensis subsp. novicida FTE] gi|118424143|gb|ABK90533.1| NADH dehydrogenase I, E subunit [Francisella novicida U112] gi|194321486|gb|EDX18971.1| NADH-quinone oxidoreductase, e subunit family [Francisella tularensis subsp. novicida FTE] Length = 162 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|332678973|gb|AEE88102.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida Fx1] Length = 162 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|302389111|ref|YP_003824932.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermosediminibacter oceani DSM 16646] gi|302199739|gb|ADL07309.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermosediminibacter oceani DSM 16646] Length = 170 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S V+E+I + R +I +L Q + ++ + + +A ++++ +V +ATF Sbjct: 10 SFQRVDEIIEAH--GRNPVNIISILQEVQNEYRYLPQDVLNYIATAMNISPSKVYGVATF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140 Y F L P G + +++C T C ++ L+ K+ K D + E V C Sbjct: 68 YENFSLEPKG-KYVIRICDGTACHVKNSTALLNALTKKLGLKEGQRTTEDLLFTLETVSC 126 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 GAC AP++++ ++ + +TPE+ EEIID Sbjct: 127 LGACGLAPVMVVNEEVHGKVTPEKAEEIIDE 157 >gi|218459738|ref|ZP_03499829.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Kim 5] Length = 164 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AC AP++ +G D + DL R++ ++D T Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRT 152 >gi|15597836|ref|NP_251330.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAO1] gi|107102160|ref|ZP_01366078.1| hypothetical protein PaerPA_01003210 [Pseudomonas aeruginosa PACS2] gi|116050627|ref|YP_790554.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa UCBPP-PA14] gi|218891199|ref|YP_002440065.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa LESB58] gi|254235624|ref|ZP_04928947.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719] gi|254241072|ref|ZP_04934394.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192] gi|296388899|ref|ZP_06878374.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAb1] gi|313107678|ref|ZP_07793860.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016] gi|81540767|sp|Q9I0J8|NUOE_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|9948708|gb|AAG06028.1|AE004692_7 NADH dehydrogenase I chain E [Pseudomonas aeruginosa PAO1] gi|115585848|gb|ABJ11863.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa UCBPP-PA14] gi|126167555|gb|EAZ53066.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719] gi|126194450|gb|EAZ58513.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192] gi|218771424|emb|CAW27191.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa LESB58] gi|310880362|gb|EFQ38956.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016] Length = 166 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q+Q GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49] Length = 161 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|116619256|ref|YP_821412.1| NADH-quinone oxidoreductase subunit E [Candidatus Solibacter usitatus Ellin6076] gi|116222418|gb|ABJ81127.1| NADH-quinone oxidoreductase, E subunit [Candidatus Solibacter usitatus Ellin6076] Length = 160 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 1/161 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + S + ++++ YPP R +SA+IP+LM AQ++ G VS I VA + + ++V Sbjct: 1 MTLSPQLEARFEKLLTSYPPGRQRSAMIPMLMYAQDELGCVSDELIAEVARRIGVTPLQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ T+Y+ P+G + HVQVC C+L +KL E K+ +DG S Sbjct: 61 NEVLTYYSMLHRKPLG-KYHVQVCTNISCLLHDGDKLYEHTCKKLGITHKEVTADGQFSI 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 EEVEC GAC AP + I D + +TPE+L++++D Q Sbjct: 120 EEVECMGACSWAPAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160 >gi|77459828|ref|YP_349335.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1] gi|77383831|gb|ABA75344.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ +N + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNNLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164 >gi|148270499|ref|YP_001244959.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170289106|ref|YP_001739344.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] gi|147736043|gb|ABQ47383.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga petrophila RKU-1] gi|170176609|gb|ACB09661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2] Length = 161 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V E++ +Y + +I +L+ QE ++ I V+ + + ++ +A Sbjct: 2 ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G ++++ + P + D S ++V Sbjct: 60 TFYAQFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP+++I + Y +LT ++++EI+ + ++ Sbjct: 119 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 158 >gi|241667719|ref|ZP_04755297.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876263|ref|ZP_05248973.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842284|gb|EET20698.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 162 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILTHIEKKLGIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4] gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4] Length = 307 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 6/181 (3%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 VR A EE P+ + + V++RYP SR SA++PLL Q ++G ++ A +E Sbjct: 27 VRPGAREEHPPAVRA---RLDADADVVVARYPNSR--SALLPLLHLVQAEDGCITPAGVE 81 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 A L + V +ATFY+ ++ P G V VC T C + G + ++ + Sbjct: 82 FCAGRLGLTGAEVAAVATFYSMYRRDPTGDYY-VGVCTNTLCAVMGGDAILAALEAHLDL 140 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +DG ++ E +EC AC AP+VM+ + +++ PE ++DA +G + Sbjct: 141 PHGGTTADGKVTLEHIECNAACDYAPVVMVNWEFFDNQNPESARSLVDALRSGDRVSPSR 200 Query: 183 G 183 G Sbjct: 201 G 201 >gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 613 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS + P + E ++ +I Y ++P+L QE+ G + A Sbjct: 1 MSAHCHSHSTPAP---EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPAV 55 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A L++ V + +FY+ + P G + ++ C + PC ++G + L+E + ++ Sbjct: 56 QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H DG + E C G C AP + I + + +LT +++ +I+ + G+ Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174 Query: 181 RPGPQ--IDRISSAPAGGLTSLLDN 203 + P S A G LL+N Sbjct: 175 KKLPYSTNAFRSYKQAPGELILLEN 199 >gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN] gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans PsJN] Length = 161 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW++ ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G + E + K+ +DG + Sbjct: 63 ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ +++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEELSK 161 >gi|254805713|ref|YP_003083934.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14] gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14] Length = 157 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ AI VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|219667453|ref|YP_002457888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium hafniense DCB-2] gi|219537713|gb|ACL19452.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium hafniense DCB-2] Length = 160 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++++ + R + A+IP+L AQ G++ I+ ++ L + +V + TFY Sbjct: 13 EEQLEQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+L+P+G R + VC T C +RG K++E K DG + E V C G Sbjct: 71 AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AC AP++ I + + L +++ I+ + Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160 >gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002] gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002] Length = 161 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQ + GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++ SPVG + + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYETSPVG-KFKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVMLVNNQRMCSFMSREKIDQLLEELSK 161 >gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC 13091] gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC 13091] Length = 157 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156 >gi|238751245|ref|ZP_04612739.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380] gi|238710519|gb|EEQ02743.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380] Length = 187 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S E + Y +R +A I L Q++ GWV AI +A++L + V Sbjct: 33 FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASDV 90 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG R ++ C + C + G + + K+ +P DG + Sbjct: 91 EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI DT+ L PE +E++++ + Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186 >gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054] gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424] gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4] gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3] gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315] gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184] gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054] gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424] gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184] gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4] gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia MC0-3] gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia J2315] Length = 161 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 157 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP R +SA++ L AQ ++GW++ IE VA+ + + ++ E Sbjct: 2 LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156 >gi|152985085|ref|YP_001347931.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PA7] gi|150960243|gb|ABR82268.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa PA7] Length = 166 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|82702145|ref|YP_411711.1| NADH-quinone oxidoreductase, E subunit [Nitrosospira multiformis ATCC 25196] gi|82410210|gb|ABB74319.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196] Length = 168 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE+ + YP +R + I L Q+ GWVS I VA L M + Sbjct: 2 LSEQERKEIEAHARHYPNNR--AVCIEALKIVQQHRGWVSNEGIADVAEALQMKPAELES 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG + + +C + C + G E+L + +++ +P +DG + Sbjct: 60 VATFYNMIFRKPVG-KHVILLCDSVSCWIMGYERLRQHLGDRLGIRPGQTTADGRFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC +AP++M+ Y+DL P R+++I+ ++ + + Sbjct: 119 NVCLGACDHAPVMMVDDAHYQDLDPARIDQILASYQQEEEKS 160 >gi|58582855|ref|YP_201871.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624720|ref|YP_452092.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577692|ref|YP_001914621.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427449|gb|AAW76486.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368660|dbj|BAE69818.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522144|gb|ACD60089.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 175 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTVDGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|294624674|ref|ZP_06703344.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666773|ref|ZP_06732007.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292601030|gb|EFF45097.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603434|gb|EFF46851.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 175 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 SE++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSEKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|62262937|gb|AAX78114.1| unknown protein [synthetic construct] Length = 197 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 34 SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 93 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 94 VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 152 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 153 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 187 >gi|307266698|ref|ZP_07548226.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|326391449|ref|ZP_08212985.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus JW 200] gi|306918300|gb|EFN48546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|325992528|gb|EGD50984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F +E + + ++I ++ AQE G++ ++ +++ + Sbjct: 7 KFGKEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + +C T C +RG ++ + K+ + DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ ++EI+ F Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159 >gi|150020390|ref|YP_001305744.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149792911|gb|ABR30359.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 157 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + V E++ ++ + +I +L+ Q++ + + + ++ LD+ ++ +A Sbjct: 2 ERTFSKVEEILEKHNYEKK--NLIKILLDVQKEYRHIPKEVVNYISVALDIPPAKIFGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + +C T C + G L++ ++ KP D S ++V Sbjct: 60 TFYAQFSLKPKGE-YTILICDGTACHMEGSMGLVKAIEEELGIKPGEVTQDLKFSLDKVG 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C GAC AP ++I + Y LTPE+ +EI+ G Sbjct: 119 CLGACALAPAMVINGEVYGKLTPEKTKEILRKLKEG 154 >gi|37526974|ref|NP_930318.1| NADH dehydrogenase subunit E [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain 5) (NUO5) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 182 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 3/164 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E + F S E + Y R +A I L Q+ GWV AI +A++L Sbjct: 21 ESQAKADFVLSTEEHDAIEHEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + + ++ P Sbjct: 79 GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + C G C P +MI DT+ + PE +E++++ + Sbjct: 138 KDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVRPEEIEKLLEQY 181 >gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768] gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768] Length = 157 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|217967305|ref|YP_002352811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] gi|217336404|gb|ACK42197.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus turgidum DSM 6724] Length = 162 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 4/158 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 FS+ + + +++ ++ ++ ++I +L QE+ G++ + A+E+V+ L + + Sbjct: 6 KFSDYAQRELEKILDQFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F+L P G + +++C T C ++G L+ I K DG S + Sbjct: 64 GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-IGLKEGKVTEDGYFSLD 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 V C GAC AP +MI ++ Y LTP++L+++I+ F Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159 >gi|160900608|ref|YP_001566190.1| NADH-quinone oxidoreductase subunit E [Delftia acidovorans SPH-1] gi|160366192|gb|ABX37805.1| NADH-quinone oxidoreductase, E subunit [Delftia acidovorans SPH-1] Length = 163 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 2/162 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + +++YP + QSAV+ L Q+++GWVS + V+A L MA I V E+ Sbjct: 3 TEATKERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + P GT + VC PC LR K + +++ K DG + ++ Sbjct: 63 TTFYNMYNQRPTGT-YKLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQS 121 Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDT 179 EC GAC ++P++++ ++ E+L+E+ID +G Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELIDGLRAAEGKA 163 >gi|332184792|gb|AEE27046.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida 3523] Length = 162 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAREDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGQTTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161 >gi|288574745|ref|ZP_06393102.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570486|gb|EFC92043.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 156 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + E +E++S P +IP+L Q + G++ A++ V+ L + + + Sbjct: 5 TTEVIARTSEIVS--PWKSKHGGLIPILQSIQGEFGYLPTEALKTVSKDLKIPEAEIYGV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY QF L+P G R V+VC T C +RG +K++++ + D + E V Sbjct: 63 ATFYAQFHLNPRG-RHVVRVCRGTACHVRGSQKILDMVKEITGINENETTKDLRFTIEPV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++M+ T+ L P ++ EI++ F Sbjct: 122 ACLGACGLAPVMMVDDQTFGRLEPSKVREILEKF 155 >gi|56478180|ref|YP_159769.1| NADH dehydrogenase subunit E [Aromatoleum aromaticum EbN1] gi|56314223|emb|CAI08868.1| NADH dehydrogenase I, chain E [Aromatoleum aromaticum EbN1] Length = 159 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S++S ++ I++YPP + QSAV+ L AQ + GW+++ IE VA LDM I E Sbjct: 2 LSQKSLQQIDREIAKYPPDQKQSAVMSALRIAQIEMGWLAKETIEFVAGYLDMPAIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG R + VC PC L G + + K+ DG + +E Sbjct: 62 VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAADYVKQKLGIDFNETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E++++++ Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQLLADL 156 >gi|148546981|ref|YP_001267083.1| NADH dehydrogenase subunit E [Pseudomonas putida F1] gi|148511039|gb|ABQ77899.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida F1] Length = 165 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVNQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383] gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria IOP40-10] gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383] gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria IOP40-10] Length = 161 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELNPVG-KHKITLCTNLPCQLGPDGGAEATADYLKQKLGIGFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|197285617|ref|YP_002151489.1| NADH dehydrogenase subunit E [Proteus mirabilis HI4320] gi|227356120|ref|ZP_03840510.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906] gi|194683104|emb|CAR43661.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis HI4320] gi|227163765|gb|EEI48677.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906] Length = 181 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F ++E + + Y R +A I L Q+ GWV AI +A++L + Sbjct: 25 NTFVLTQEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ P DG Sbjct: 83 DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNILPGQTTPDGRF 141 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +M+ DT+ + PE +E +++ + Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180 >gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147] gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786] Length = 161 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVGT + +C PC L G E E + K+ DG + Sbjct: 63 ATFYTMYELAPVGT-HKITLCTNLPCQLGPHGGAEATAEYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161 >gi|220931028|ref|YP_002507936.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] gi|219992338|gb|ACL68941.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] Length = 167 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + VNE+I ++ + QS +IP+L Q++ ++ + +A ++D++ V +ATF Sbjct: 10 NFTRVNEIIEKH--GKDQSKLIPILQEVQKEYRYLPEEILTYIATVMDLSPATVYGVATF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140 Y QF L P G + + VC T C + G ++ R K++ + D + E V C Sbjct: 68 YAQFSLDPKG-KYVINVCDGTACHVSGSLPVLNAIRKKLNLEDGKFTTDDLMFTVETVSC 126 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+V I Y +TPE +E IID Sbjct: 127 LGACGLAPVVTINGKVYGKMTPEAIEVIIDEL 158 >gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M13399] gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240013] gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240013] gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M04-240196] Length = 157 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156 >gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 614 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 8/205 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS P+ + E ++ +I Y ++P+L QE+ G + Sbjct: 1 MSAH--CHSHSAPAP-EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPTV 55 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A L++ V + +FY+ + P G + ++ C + PC ++G + L+E + ++ Sbjct: 56 QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 H DG + E C G C AP + I + + +LT +++ +I+ + G+ Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174 Query: 181 RPGPQ--IDRISSAPAGGLTSLLDN 203 + P S A G LL+N Sbjct: 175 KKLPYSTNAFRSYKQAPGELILLEN 199 >gi|94676865|ref|YP_588822.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220015|gb|ABF14174.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 167 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 ++F + E + + ++Y +R S I L Q+Q GWV +AI+ +AN L ++ Sbjct: 10 DTNFKLNPELYQAIQQEKNKYEDARAVS--IEALKMVQKQYGWVPDSAIQAIANTLGISG 67 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V E+ATFY+ PVG R ++ C + C + G + + N ++ KP DG Sbjct: 68 SDVEEVATFYSNIFRQPVG-RHVIRYCNSVVCYITGYQTIQTKLENCLNIKPGKTTPDGR 126 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DTY LT E + ++++ + Sbjct: 127 FTLLPTCCLGNCDKGPTMMINDDTYVHLTAENICQLLELY 166 >gi|218961475|ref|YP_001741250.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] gi|167730132|emb|CAO81044.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] Length = 151 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 5/150 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E+ +Y P + +I +L Q+Q + ++S A++ VA LD+ + + TFYT Sbjct: 2 IKEICQKYAP--RKDNLIQILHEIQDQDPQHYISPEAVDTVAEYLDIPVNHIYGVLTFYT 59 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + P G + +++C + PC ++G + ++ + + DG + E C G Sbjct: 60 MYSTKPRG-KNIIRLCESPPCYIKGSDNMLRKLKVLLGINIGETTKDGLFTLEFTSCLGV 118 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C NAP++MI D Y DLT E++EEII+ Sbjct: 119 CGNAPVMMINDDVYGDLTEEKVEEIIERIR 148 >gi|134299711|ref|YP_001113207.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052411|gb|ABO50382.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1] Length = 160 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 SF + + E +RY ++IP+L AQE G++S ++ +A L++ Y +V Sbjct: 7 SFKDPKQKALKETFARY--QGTSGSLIPILQEAQEIYGYLSGEVMQQIARELNIPYSKVY 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY QF L P G R +++C T C ++G ++L+E R + D + E Sbjct: 65 GVVTFYAQFHLRPRG-RNIIRICTGTACHVKGADRLLETVREATGLEGEGTTEDLRYTLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP +MI +DTY LTP + I+ + Sbjct: 124 TVACLGACGLAPAMMINEDTYGRLTPVKALNILKQYQ 160 >gi|147678984|ref|YP_001213199.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275081|dbj|BAF60830.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 162 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++E A + +++ +Y + +IP+L AQ G++ + ++ ++ L++ + +V Sbjct: 12 LTKEEA--LQKLLDQYRDYK--GGLIPVLQEAQNIYGYLPKEVLQQISKELNVPFSKVFG 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY QF L P G R ++VC T C +RG K+ E R+ + D + E Sbjct: 68 VATFYAQFHLKPRG-RNIIRVCLGTACHVRGGAKIYEAVRDHLGISHGETTDDLRYTIEN 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C GAC +P +M+ DT+ L P R+ I+D + Sbjct: 127 VACIGACGLSPCMMVNNDTHGRLVPSRVPAILDQY 161 >gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD] gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MEX-5] gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6] gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD] gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MEX-5] gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria MC40-6] Length = 161 Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ +++YP + QSAV+ L AQE+ GW+S ++ VA+ L M + V E+ Sbjct: 3 SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + + K+ DG + Sbjct: 63 ATFYTMYELNPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC G+C +AP++++ ++ E+++++++ S Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161 >gi|167627157|ref|YP_001677657.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597158|gb|ABZ87156.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 162 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E Sbjct: 8 SPQAKEDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTNDLQTALAEYLQVSKVDVYE 67 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY ++L PVG R + +C CML G ++ K+ KP DG ++ +E Sbjct: 68 VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 VECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161 >gi|164687261|ref|ZP_02211289.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM 16795] gi|164603685|gb|EDQ97150.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM 16795] Length = 176 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ ++E++ Y + + +I +L +AQ+ G++S + ++ + ++ +AT Sbjct: 12 DNLKELDEILETY--GKKKGYLITILQKAQDAYGYISIDIMNRISEFTGIKVAKIYGVAT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY QF+L P+G + + +C T C + G E + +V +++ K DG + +V C Sbjct: 70 FYAQFRLQPIG-KYLIMLCQGTACHVNGSEMISQVISEQLNIKDGETTEDGLFTLNQVSC 128 Query: 141 QGACVNAPMVMI----GKDTYEDLTPERLEEIIDA 171 G C AP++MI +TY +LT + + EI++ Sbjct: 129 LGCCSLAPVMMIKTEDSDETYGNLTKDSVIEILNQ 163 >gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996] gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996] Length = 157 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|21243428|ref|NP_643010.1| NADH dehydrogenase subunit E [Xanthomonas axonopodis pv. citri str. 306] gi|78048405|ref|YP_364580.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924679|ref|ZP_08186117.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118] gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78036835|emb|CAJ24528.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544885|gb|EGD16230.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118] Length = 175 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ ++++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E+++ ++D Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174 >gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria meningitidis alpha275] gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E; NDH-1, chain E) [Neisseria meningitidis 8013] gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M6190] gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis ES14902] gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 961-5945] gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis 961-5945] gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis G2136] Length = 157 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|83590720|ref|YP_430729.1| NADH-quinone oxidoreductase, E subunit [Moorella thermoacetica ATCC 39073] gi|83573634|gb|ABC20186.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073] Length = 159 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 14/173 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M RR E QP A + ++++RY + A+IP+L QE G++ A Sbjct: 1 MGSRR----EVQPMP-------AETIKQIVARYQEEK--GALIPVLQATQEALGYLPPEA 47 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 ++ +A +D+ V + TFY QF L P G R + VC T C +RG +++ + + Sbjct: 48 LKEIAAAMDLPLSTVYSVVTFYAQFHLQPRG-RHVIHVCQGTACHIRGGNRILNRIKELL 106 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D + E V C GAC AP++ I DTY L P+ + I++ + Sbjct: 107 QIDAGETTPDLRFTLEPVACLGACALAPVMSISGDTYGHLKPDMIAGILEKYQ 159 >gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM 7299] gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM 7299] Length = 158 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F +++E+ +YP + + ++P L QEQEGWVS A+ VA+ + I Sbjct: 2 AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E ATFYT F L P+GT H+++C T CML G L + ++ I +P ++DG Sbjct: 60 EVYEFATFYTMFNLKPIGT-YHIELCKTLSCMLMGANNLKKFIKDTIGIEPGQTSADGKF 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EVEC GAC APM + +E+ T E L+ +I+ Sbjct: 119 HLSEVECLGACGGAPMFALNGQYHENQTVESLKNLIEECK 158 >gi|330958156|gb|EGH58416.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDMLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|26990816|ref|NP_746241.1| NADH dehydrogenase subunit E [Pseudomonas putida KT2440] gi|325277475|ref|ZP_08143080.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51] gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subunit [Pseudomonas putida KT2440] gi|324097391|gb|EGB95632.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51] Length = 165 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC BAA-1200] gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC BAA-1200] Length = 157 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + ES ++ +++YP R +SAV+ L AQ ++GW++ IE VA+ + +A + E Sbjct: 2 LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYNLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLIE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEQKLAELQ 157 >gi|154248926|ref|YP_001409751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] gi|154152862|gb|ABS60094.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 157 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + V +++ +Y + +I +L+ Q++ + R + + L + ++ +ATF Sbjct: 4 TFDKVEKILEKY--GYKKEMLIKILLEVQKEYRHIPREVVNYIGVALGIPPAKIYGVATF 61 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L P G + +C T C + G L++ ++ KP D S ++V C Sbjct: 62 YAQFSLKPKGE-YTILICDGTACHMEGSMSLVKAIEEEVGIKPGEVTPDLKFSLDKVGCL 120 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP ++I + Y +L PE+++EI+ + + Sbjct: 121 GACALAPAMVINGEVYGNLKPEKVKEILRNLKERKAE 157 >gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct] Length = 167 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 7 IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKRRGWVPDGAIPAIGEVLGI 64 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ +D Sbjct: 65 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P+ + ++++A+ Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165 >gi|182412306|ref|YP_001817372.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1] gi|177839520|gb|ACB73772.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1] Length = 162 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 3/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E+ ++EVI+ YP R SA +PLL QE G++ A E +A L++ I V Sbjct: 1 MNLKPETLQKIDEVITHYPTKR--SATLPLLHLIQEDIGYIPAEAHEWIAAKLEIQPINV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY F+ P+G R V+VC T C LRG K+ E + + K + DG ++ Sbjct: 59 YEVVTFYPMFRQKPIGRRH-VKVCRTLSCALRGGYKVCEQFEKEFNTKTGEISPDGEVTV 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E VEC +C AP+VMI D +E++ + +++ + Sbjct: 118 EFVECLASCGTAPVVMIDDDLHENVDAAKAKQLAEQIKA 156 >gi|218674604|ref|ZP_03524273.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli GR56] Length = 170 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I + E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWIYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 AC AP++ +G D + DL R++ ++D T G D S+AP G Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169 >gi|167034690|ref|YP_001669921.1| NADH dehydrogenase subunit E [Pseudomonas putida GB-1] gi|166861178|gb|ABY99585.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida GB-1] Length = 165 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164 >gi|291613542|ref|YP_003523699.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus ES-1] gi|291583654|gb|ADE11312.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus ES-1] Length = 161 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S++ +++ + +YP + QSAV+ L Q+++GW++ + +A + M + V E Sbjct: 2 LSQQITTLIDKELKKYPADQRQSAVMAALRFVQDEKGWIAPDDMADIAAYIGMPQMAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L P+G + + VC C L G ++ + ++ +DG E Sbjct: 62 VATFYHMYNLKPMG-KYTLTVCTNLSCQLCGSDETLAHLNKRLGIGLGEVTADGKYGLRE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177 EC GACV+APM I LT E++++I+ GQ Sbjct: 121 GECMGACVDAPMFTINNKKLCGRLTSEKIDQILAELDGGQA 161 >gi|291004455|ref|ZP_06562428.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] Length = 244 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 8/188 (4%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + +S F E+ ++I RYP SR SA++P+L Q +G VS IE A LD Sbjct: 3 DMSNTSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLD 60 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-- 127 ++ V +ATFYT ++ P G V VC T C G + + + Sbjct: 61 LSTAEVSAVATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAG 119 Query: 128 --NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG-P 184 +G+L+ E EC AC P++ + + Y++ TPE+ E++ A G+ G P Sbjct: 120 TPGEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRGAP 179 Query: 185 QIDRISSA 192 D + Sbjct: 180 LSDFRGAE 187 >gi|158319964|ref|YP_001512471.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158140163|gb|ABW18475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 166 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A+IP L + Q G++ A+ +V+ LD+ ++ +A+FY+ F L P G + V Sbjct: 32 EGALIPALHKIQSIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQ-HVISV 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G + ++E ++++ + + DG + + C GAC AP++MI + Y Sbjct: 91 CLGTACYVKGSQNILERLSSELNIQEGNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYG 150 Query: 159 DLTPERLEEIIDAFST 174 LTP + +I+ ++ Sbjct: 151 RLTPSDVPKILSEYTE 166 >gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240355] Length = 157 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG + + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGVNAADYLKQKLGIGFGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEVIEKKLAEL 156 >gi|154249674|ref|YP_001410499.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum Rt17-B1] gi|154153610|gb|ABS60842.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum Rt17-B1] Length = 161 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYT 83 +NE+ R ++ LL R Q+ ++ E++A L++ +V E+ TFYT Sbjct: 10 INEIKEESLEER--DMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYT 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + ++VC + PC + G ++++ + K+ DG + EE C G Sbjct: 68 MFSTKPRG-KYIIRVCTSLPCHVPGGREIVQFLKQKLGVDFGETTKDGLFTLEETGCLGL 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C +P++M+ Y DLT E++ EII+ G+G Sbjct: 127 CGVSPVIMVNDQYYGDLTVEKVNEIIENLKGGEGK 161 >gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18] gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18] gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710] Length = 157 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I chain E [Neisseria lactamica ST-640] gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06] Length = 157 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|297570900|ref|YP_003696674.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium haemolyticum DSM 20595] gi|296931247|gb|ADH92055.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 3/173 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P E+ +I+RYP SR SA++PLL Q +G+ S I +VA+IL + Sbjct: 4 PYEPQVEEKFRQDAAAIIARYPQSR--SAIMPLLHLVQSVDGFCSPRGITLVADILGLTR 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFY+Q++ P G +V VC C + G + + + + DG Sbjct: 62 AQVSAVATFYSQYRRHPNGE-YNVGVCTNALCAVMGGDLIWDELSEYVGVGHDETTQDGK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 ++ E++EC C AP+VM+ + +++ TPE ++I+D G GP+ Sbjct: 121 ITLEQLECNAGCDYAPVVMVNWEFFDNQTPETAKKIVDDIRAGHDIHPTRGPE 173 >gi|217076872|ref|YP_002334588.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217036725|gb|ACJ75247.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 157 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + V E++ ++ + +I +L+ Q++ + + + ++ LD+ ++ +A Sbjct: 2 ERNFEKVEEILKKHGYEKK--NLIKILLDVQKEYRHIPKEVVNYLSVALDIPPAKIFGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + +C T C + G LI+ ++ KP D S ++V Sbjct: 60 TFYAQFSLKPKGE-YTILICDGTACHMEGSMSLIKAIEEEVGVKPGEVTQDLKFSLDKVG 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C GAC AP ++I + Y +LTPE+ +EI+ G Sbjct: 119 CLGACALAPAMVINGEVYGNLTPEKTKEILRKLKEG 154 >gi|170721054|ref|YP_001748742.1| NADH dehydrogenase subunit E [Pseudomonas putida W619] gi|169759057|gb|ACA72373.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida W619] gi|313498028|gb|ADR59394.1| NADH dehydrogenase subunit E [Pseudomonas putida BIRD-1] Length = 165 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164 >gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E subunit [Candidatus Koribacter versatilis Ellin345] gi|94550390|gb|ABF40314.1| NADH dehydrogenase subunit E [Candidatus Koribacter versatilis Ellin345] Length = 160 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 FS+ W E YP R S ++P L+ Q++ G++S AI +AN +++ + V Sbjct: 1 MKFSDNLEKWFAEAQGHYPTKR--SPLVPFLLYVQDEVGYLSDEAIVEIANRVELTPLEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + ++Y+ + P+G + +VQVC C+ RG E + E C+ + DG S Sbjct: 59 RNVISYYSMLRTKPIG-KYNVQVCTNICCLQRGGEDIFEHCKKTLGIGHKQTTPDGLFSL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 EEVEC GAC AP V + D +E+LTPE ++ +I+++ + Sbjct: 118 EEVECIGACSWAPAVQVNYDFHENLTPETMDAVIESYRKRE 158 >gi|285017796|ref|YP_003375507.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e) (ndh-1, chain e) (nuo5) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473014|emb|CBA15519.1| probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein [Xanthomonas albilineans] Length = 175 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 S+++ ++ +S++PP R +SAV+ L AQEQ +GW++ I VA L++ + Sbjct: 19 LSDKTRAHIDHWLSKFPPERKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+A+FY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLVAHAEKKLGCKLGQSTADGRVYLK 137 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC C APM++I +E LT ++++ ++D Sbjct: 138 REEECLAGCAGAPMMVINGHYHEHLTKDKVDALLDGL 174 >gi|223558017|gb|ACM91023.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 161 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E++ + + ++ + Y + +I +L + Q G++ +VVA+ L + RV Sbjct: 7 KITEDNYLKIKDICASY--NNNPGELINVLHKTQGTFGYLPEEVQQVVADCLGIPVGRVY 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ F + P G + + VC T C ++G EK+++ ++++ DG S + Sbjct: 65 GVVSFYSFFTMKPKG-KYAISVCLGTACYVKGAEKILDALKSELKISEGGVTEDGKFSLD 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C GAC AP++ I TY L PE ++EI+ ++ Sbjct: 124 VLRCVGACGLAPVMTINGKTYGRLVPEHVKEILAEYAE 161 >gi|104782524|ref|YP_609022.1| NADH dehydrogenase subunit E [Pseudomonas entomophila L48] gi|95111511|emb|CAK16231.1| NADH dehydrogenase I chain E [Pseudomonas entomophila L48] Length = 165 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + +L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164 >gi|9719441|gb|AAF97801.1|AF281148_5 NADH dehydrogenase I subunit E [Pseudomonas fluorescens] Length = 166 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 3/165 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 + + F SE + + Y R +A I L Q++ GWV A+ + I Sbjct: 4 QHAYPDRPFRLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEI 61 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+Q PVG R ++VC + C + G E ++ +NK+ Sbjct: 62 LGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQT 120 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +DG + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 121 TADGRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 165 >gi|258516626|ref|YP_003192848.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780331|gb|ACV64225.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum acetoxidans DSM 771] Length = 163 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E++ ++ + A+IP+L AQ+ G++ + ++ ++ L + + ++ ++TFY Sbjct: 16 QQALQELLQKFKGYK--GAIIPVLQGAQDIYGYLPKEVMQQISKDLRVPFSKIYGVSTFY 73 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF L P G R V+VC T C +RG +K+ E + D + E V C G Sbjct: 74 AQFHLKPRG-RNIVRVCQGTACHVRGGKKIFEAVEKVLGISEGGTTEDLRFTLETVACLG 132 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP++MI DT+ L P ++ I++ + Sbjct: 133 ACGLAPVLMINDDTHGRLVPGDIQGILEQY 162 >gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM 43247] gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM 43247] Length = 706 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 10/194 (5%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP SR SA++PLL Q ++G+++RA I A LD+ +V +ATFY+ ++ +P G Sbjct: 55 RYPQSR--SALLPLLHLVQSEDGFITRAGILFCAAQLDLTAAQVASVATFYSMYRRNPTG 112 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VC T C G + ++ + P +D ++ E VEC AC AP+VM Sbjct: 113 E-YLIGVCTNTLCATLGGDDILGSVCEHLGIDPGDTTADSRITVEHVECNAACDFAPVVM 171 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLTSLLDNN 204 + + +++ TP+ E+++ G G Q R + G TS L Sbjct: 172 VNWEFFDNQTPDTAIELVEDLRAGVPTEPSRGTGSLCSFRQTARTLAGLPEGPTSPLTLP 231 Query: 205 SKKRGKKKKDDKIS 218 + + +++ S Sbjct: 232 EVRGAVLRSEERAS 245 >gi|323702551|ref|ZP_08114214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532525|gb|EGB22401.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 161 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +++ + E++++Y A+IP+L +AQE G++ I+ +A L + RV + Sbjct: 10 NQDKQKSLAELLTKYKE--QPGALIPVLQQAQEIFGYLGPEVIDQIAGELKIPPARVYGV 67 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY QF L P G R ++VC T C +RG K++E + + +P + D + E V Sbjct: 68 ATFYAQFHLQPRG-RHVIKVCQGTACHVRGGAKVLEAIKKQTGLEPGETSKDLRYTLETV 126 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C GAC AP++M+ +DT L+PE+ + I Sbjct: 127 ACLGACGLAPVMMVNEDTQGQLSPEKAVKKIAQ 159 >gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43] Length = 161 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ I++YP + QSAV+ L AQE+ GW+S ++ VA+ L M I V E+ Sbjct: 3 SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFYT ++L+PVG + + +C PC L G E + K+ DG + Sbjct: 63 ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATAAYLKQKLGIDFGETTPDGKFTL 121 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC +AP++++ ++ E+++++++ S Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSLMSREKIDQLLEELSK 161 >gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970] gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970] Length = 157 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|258513532|ref|YP_003189754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777237|gb|ACV61131.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 165 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 S E V+++I P S +I +L R QE G++ R VA L++ V Sbjct: 10 QLSAELLSQVDKIIE--PSSGRSGNLIQVLHRVQELVGYLPREVQVRVAEGLNVPLSIVY 67 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ F + P G + + VC T C +RG ++LI ++++ K SDG S Sbjct: 68 GVVSFYSFFNVLPKG-KHTINVCTGTACYVRGAKQLINNIQDQLDIKTGGTTSDGQFSLG 126 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 V C GAC P+V I +D + + PE+++ I+ +S Sbjct: 127 MVRCVGACGLGPVVTINEDVHAQVRPEKIDGILAKYSK 164 >gi|66046429|ref|YP_236270.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae B728a] gi|63257136|gb|AAY38232.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas syringae pv. syringae B728a] gi|330954560|gb|EGH54820.1| NADH dehydrogenase subunit E [Pseudomonas syringae Cit 7] gi|330972910|gb|EGH72976.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ +N + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKNSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, subunit E [Pseudomonas syringae pv. tomato str. DC3000] gi|213970032|ref|ZP_03398164.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato T1] gi|301381387|ref|ZP_07229805.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato Max13] gi|302062158|ref|ZP_07253699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato K40] gi|302130468|ref|ZP_07256458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925136|gb|EEB58699.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato T1] gi|330875770|gb|EGH09919.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965588|gb|EGH65848.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017274|gb|EGH97330.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFVLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ + + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPATVAKMLEGY 164 >gi|163855991|ref|YP_001630289.1| NADH dehydrogenase subunit E [Bordetella petrii DSM 12804] gi|163259719|emb|CAP42020.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella petrii] Length = 167 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQ+++GW+S +E VAN + + I V Sbjct: 1 MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQDEKGWLSPEVLEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVG + + VC PC LR EK + + K+ DG + Sbjct: 61 QEVATFYNMFDVKPVG-KHKIAVCTNLPCALRDGEKAGDYLKRKLGIDYRETTPDGLFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 E EC GAC ++P++++ +T E+L+ ++ Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVQGLKE 159 >gi|70731259|ref|YP_261000.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf-5] gi|68345558|gb|AAY93164.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas fluorescens Pf-5] Length = 165 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV A+ + IL + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAVYAIGEILGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++++ +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP +MI DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164 >gi|149927545|ref|ZP_01915799.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105] gi|149823818|gb|EDM83044.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105] Length = 159 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE + +++ +++YP + SAV+ L AQ + GW+ AIE VA L++ I Sbjct: 1 MKLSENAYRLIDKELTKYPADQKISAVMAALRIAQVELGWLPSEAIEAVAEYLEIQPIAA 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY + VG ++ + VC PC L G E + K+ DG + Sbjct: 61 YEVATFYNMYDTKKVG-KSKIVVCTNLPCALSGGTDAAEYLKKKLGIDYNETTKDGLFTL 119 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 +E EC GAC ++P++++ ++ E+++ +++ + Sbjct: 120 KEGECMGACGDSPVMLVNNHRMCSFMSNEKIDALVEELKS 159 >gi|134103326|ref|YP_001108987.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] gi|133915949|emb|CAM06062.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 8/187 (4%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 +S F E+ ++I RYP SR SA++P+L Q +G VS IE A LD+ Sbjct: 1 MSNTSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDL 58 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--- 127 + V +ATFYT ++ P G V VC T C G + + + Sbjct: 59 STAEVSAVATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGT 117 Query: 128 -NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG-PQ 185 +G+L+ E EC AC P++ + + Y++ TPE+ E++ A G+ G P Sbjct: 118 PGEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRGAPL 177 Query: 186 IDRISSA 192 D + Sbjct: 178 SDFRGAE 184 >gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58] gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58] gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis H44/76] gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis CU385] gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis H44/76] Length = 157 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|86359330|ref|YP_471222.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] gi|86283432|gb|ABC92495.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN 42] Length = 172 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 2 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 60 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 118 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AC AP++ +G D + DL R++ ++D T Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRT 150 >gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] Length = 906 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 5/175 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E ++EVI RY S +I LL +AQE G++ A +A +D+ V + + Sbjct: 15 EKMRLLDEVIDRYKDS--PGQLIRLLHKAQEIFGYLPEAVQCHIAERMDLPVSEVAGVVS 72 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+ F P G + V VC T C ++G +++ + ++ +DG + + C Sbjct: 73 FYSLFSRQPKG-KHTVSVCMGTACYVKGAPEVLTAIKKELSIDLGQTTADGMFTLTDTRC 131 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 GAC AP ++I + + + + ++D + + + P +S +G Sbjct: 132 VGACGLAPAIVIDGEVHGRMKAADVPALLDGYRNRKDEQNV--PTAAEKASEESG 184 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + +C T C +L +++ D C G C P+V+I Sbjct: 309 HQILLCAGTGCTSSRSAELRRALHSELT----RCGLDKEAHVVPTGCFGFCELGPVVVIH 364 Query: 154 KD--TYEDLTPERLEEIIDAFST 174 + Y + P+ +EI++ Sbjct: 365 PERIFYCQVAPDDAKEIVERHIA 387 >gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I] gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50] gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella pertussis Tohama I] gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella bronchiseptica RB50] gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS] Length = 164 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V Sbjct: 1 MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVGT + VC PC LR EK + + K+ +DG + Sbjct: 61 QEVATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 E EC GAC ++P++++ +T E+L+ ++D + Sbjct: 120 IEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKS 159 >gi|150007690|ref|YP_001302433.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013605|ref|ZP_05285731.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|256839951|ref|ZP_05545460.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] gi|262381801|ref|ZP_06074939.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|298375636|ref|ZP_06985593.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19] gi|301310273|ref|ZP_07216212.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3] gi|149936114|gb|ABR42811.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|256738881|gb|EEU52206.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] gi|262296978|gb|EEY84908.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|298268136|gb|EFI09792.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19] gi|300831847|gb|EFK62478.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3] Length = 162 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ + + + +I +L AQ G++ +V+A L++ RV + TFY+ Sbjct: 12 AELHAICA--ERNNDPGELINILHAAQGLFGYLPPEVQQVIAAELNIPVSRVYGVVTFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F ++P G + + VC T C +RG E ++E + ++ K DG S + + C GA Sbjct: 70 FFTMTPKG-KYPISVCLGTACYVRGAENVLEEMQRQLEIKVGETTPDGLFSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP+VMIG Y +TPE++ +I+ + Sbjct: 129 CGLAPVVMIGGKVYGRVTPEKVRDILSDY 157 >gi|146295663|ref|YP_001179434.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409239|gb|ABP66243.1| NADH dehydrogenase subunit E [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 174 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+F + ++ V+ Y + S +I +L + QE ++ A+ ++ + Sbjct: 12 SNFKNQKVDLSLLDPVLDEYKGEK--SNIIAILQKTQEIYRFLPLDALNYISEKTGVKKA 69 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 ++ IATFY QF+L PVG + + C T C + G E++ ++++ KP DG Sbjct: 70 KIYGIATFYAQFRLKPVG-KYVILQCQGTACHVNGSEEIKNALCDELNIKPGDTTEDGMF 128 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + EEV C G C AP++MI +TY LTP++ EII Sbjct: 129 TLEEVACLGCCSLAPVMMINGETYGKLTPDKAREII 164 >gi|222100043|ref|YP_002534611.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359] gi|221572433|gb|ACM23245.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359] Length = 164 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V E++ ++ + +I +L+ QE ++ I V+ + + ++ +A Sbjct: 5 ERRFERVEEILRKH--GYKRENLIKILLEIQELYRYLPEDVINYVSTAMGIPPAKIYGVA 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G + + VC T C + G ++++ + P + D S ++V Sbjct: 63 TFYAQFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP+++I + Y +LT E+++EI+ + ++ Sbjct: 122 CLGACALAPVMVINDEVYGNLTAEKVKEILRKIKEKERES 161 >gi|190893217|ref|YP_001979759.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652] gi|190698496|gb|ACE92581.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli CIAT 652] Length = 167 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 2 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 60 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 118 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AC AP++ +G D + DL R++ ++ T G Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLARLRTEAGQ 154 >gi|289522360|ref|ZP_06439214.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504196|gb|EFD25360.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 166 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 3/157 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ + +I + + I LL + QE G++ + + VA LD+ + +A Sbjct: 6 QDDEQALQNIIETF--RGKKGITISLLSKIQESYGYLPQEVLSRVAKELDIPEASLYGVA 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ P+G + +++C T C ++G + + + DG + E V Sbjct: 64 TFYAMFRFKPLG-KYTIKLCRGTACHVQGSLLIAQEVMRHLGISEGETTDDGLFTLELVA 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C G C AP++M+G+D Y LTP+R +++D++ T + Sbjct: 123 CLGCCSLAPVMMVGEDVYGRLTPDRAVKVLDSYRTNK 159 >gi|225572063|ref|ZP_03780927.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM 10507] gi|225040498|gb|EEG50744.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM 10507] Length = 172 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S+ + + V+ +Y ++ ++I +L + Q+ G++S AI ++ + ++ + Sbjct: 13 SDGNFAELAPVLEKY--AKVPGSLITILQKTQDIYGYLSMDAINYISERTGIMPAKIYGV 70 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY QF+L P+G + + +C T C + G + + E + + DG + V Sbjct: 71 ATFYAQFRLQPIG-KYLIMLCKGTACHVNGADMIQEAVSEHLGIQDGETTEDGLFTLNAV 129 Query: 139 ECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFST 174 C G C AP++M+ G++T+ +LT + +I+D + Sbjct: 130 ACLGCCSLAPVMMVKTVDGEETFGNLTKSSVTKILDDYKA 169 >gi|290475914|ref|YP_003468809.1| NADH dehydrogenase I subunit E [Xenorhabdus bovienii SS-2004] gi|289175242|emb|CBJ82045.1| NADH dehydrogenase I chain E [Xenorhabdus bovienii SS-2004] Length = 181 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 +F S + + Y R +A I L Q+Q GWV AI VA +L + Sbjct: 26 AFVLSTAERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAVAEVLGIPASD 83 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + + ++ +P DG + Sbjct: 84 VEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEMHLNIRPGQTTEDGRFT 142 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ + PE +E++++ + Sbjct: 143 LLPTCCLGNCDKGPTMMIDEDTHSYVKPEEIEKLLEQY 180 >gi|297544310|ref|YP_003676612.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842085|gb|ADH60601.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 160 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F EE + + ++I ++ AQE G++ ++ +++ + Sbjct: 7 KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + +C T C +RG ++E + K+ + DG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ ++EI+ F Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159 >gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2] gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2] Length = 163 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 3/153 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E+ ++EVI+ YP R SA +PLL QE G++S A+E +A+ L + I V Sbjct: 1 MNLKPETLQRIDEVITHYPVKR--SATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 LE+ TFY F+ P+G R ++VC T C L G K+ E + + + DG ++ Sbjct: 59 LEVVTFYPMFRRKPIGRRH-IKVCRTLSCALMGGYKVCETMQKEFDTHLNEVSPDGEVTV 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 E VEC +C AP+VMI + +E++TP R E+ Sbjct: 118 EFVECLASCGTAPVVMIDETLHENVTPARAREL 150 >gi|168184521|ref|ZP_02619185.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795253|ref|YP_002862805.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672342|gb|EDT84303.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229261562|gb|ACQ52595.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum Ba4 str. 657] Length = 159 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 3/149 (2%) Query: 28 EVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + + +Y S + ++I +L +AQ G++ E VA LD+ +V + TFY+ F Sbjct: 12 KELEKYINNISNKKGSLIEVLHKAQHIFGYLPNDVQEFVAKKLDIPVSKVYGVITFYSYF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + VC T C ++G ++ K++ K DG + + + C GAC Sbjct: 72 TTEPKGE-NVINVCMGTACFVKGAGDILSEFEKKLNIKVGETTKDGKFTLQVLRCVGACG 130 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AP+V I Y T ++++++ + Sbjct: 131 LAPVVTINDKVYGHFTKNEVDKVLEEYGA 159 >gi|237800541|ref|ZP_04589002.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023401|gb|EGI03458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str. 1_6] Length = 165 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ + + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + E+++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAEMLEGY 164 >gi|304316575|ref|YP_003851720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778077|gb|ADL68636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 160 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F EE +VI ++I ++ AQE G++ + ++ +++ + Sbjct: 7 KFDEEKVNKFKKVIDELKN--VDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY++F L P G + + +C T C ++G +++ + K+ SDG S E Sbjct: 65 GIATFYSRFTLKPSG-KYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLE 123 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP+ +++I+ F Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKF 159 >gi|187779550|ref|ZP_02996023.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC 15579] gi|187773175|gb|EDU36977.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC 15579] Length = 159 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+ Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + VC T C ++G ++ K++ K DG + + + C GA Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V I Y T ++++++ + Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159 >gi|168180427|ref|ZP_02615091.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|170756016|ref|YP_001781397.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|170758313|ref|YP_001787174.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169121228|gb|ACA45064.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B1 str. Okra] gi|169405302|gb|ACA53713.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A3 str. Loch Maree] gi|182668883|gb|EDT80861.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] Length = 159 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+ Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + VC T C ++G ++ K++ K DG + + + C GA Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V I Y T ++++++ + Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159 >gi|254874053|ref|ZP_05246763.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254840052|gb|EET18488.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 156 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78 +++ ++ V+S++P + +SA++ L Q+Q G +++ +A L ++ + V E+ Sbjct: 3 KDTLYHIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY + L PVG R + VC CML G +++ K+ KP DG ++ +EV Sbjct: 63 ATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ECQGAC +PM+ + K YE+LT E++ +IID+ Sbjct: 122 ECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 155 >gi|71733608|ref|YP_275282.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485442|ref|ZP_05639483.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625429|ref|ZP_06458383.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649288|ref|ZP_06480631.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. 2250] gi|289679199|ref|ZP_06500089.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae FF5] gi|298487551|ref|ZP_07005593.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185026|ref|ZP_07261699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae 642] gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157935|gb|EFH99013.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323791|gb|EFW79875.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. B076] gi|320327930|gb|EFW83935.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. race 4] gi|330866835|gb|EGH01544.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330881186|gb|EGH15335.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea str. race 4] gi|330889657|gb|EGH22318.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. mori str. 301020] gi|330900628|gb|EGH32047.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. japonica str. M301072PT] gi|330987945|gb|EGH86048.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010724|gb|EGH90780.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|145589230|ref|YP_001155827.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047636|gb|ABP34263.1| NADH dehydrogenase subunit E [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 168 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 2/163 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ S+++ ++ I++YP QSAV+ L+ AQ + GWVS IE VA IL+M I Sbjct: 3 TTLQLSDKTLADIHRNIAKYPAEHKQSAVMACLIAAQTEVGWVSPEVIEAVAQILEMPTI 62 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + P+G + + +C PC L E + + GT Sbjct: 63 AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAATYLKETLGIGFNETTPCGTF 121 Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTG 175 + +E EC GAC ++P++++ ++ E+++ ++ G Sbjct: 122 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAG 164 >gi|269218341|ref|ZP_06162195.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212200|gb|EEZ78540.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 223 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 +E + P E E+++RYP +R SA++P+L Q +G+VS I + A++ Sbjct: 2 KEGYPP---EVEERLRADSREIVARYPVAR--SALMPMLHLVQSVDGFVSPRGIALCADV 56 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+Q++ P G +V VC C + G +++ E + + Sbjct: 57 LGLTRAEVSAVATFYSQYRRHPNGE-YNVGVCTNALCAVMGGDEIWEALTSALGVGSDET 115 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 DG ++ E +EC C AP+VM+ + +++ TP +I++ G+ G Sbjct: 116 TPDGKITLEALECNAGCDYAPVVMVNWEFFDNQTPTSALQIVEDIRAGRDLHPTRG 171 >gi|327191025|gb|EGE58079.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CNPAF512] Length = 169 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AC AP++ +G D + L R++ ++D T G Sbjct: 121 ACEMAPVMQVGDDYHGGLDIARIDALLDRLRTEAGQ 156 >gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107] Length = 157 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 SECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|229821705|ref|YP_002883231.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM 12333] gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM 12333] Length = 283 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 21/210 (10%) Query: 21 ESAIWVNE--VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 E + + ++ RYP R SA++PLL Q ++ +VS A I + A++L + V + Sbjct: 13 EERLRADAAVILERYPEQR--SALLPLLHLVQAEDSYVSPAGIALCADLLGLTNAEVSAV 70 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYTQ++ P G R V VC T C + G +++ + ++ DG ++ E + Sbjct: 71 ATFYTQYKRRPNG-RYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQDGAITLERI 129 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------------- 184 EC AC AP++M+ + +++ TP ++++A + Q T G Sbjct: 130 ECNAACDYAPVLMVNWEFFDNQTPTSAVDLVEALAADQPVTPTRGAAQVQDFRATSRVLA 189 Query: 185 --QIDRISSAPAGGLTSLLDNNSKKRGKKK 212 + R P G SL+ + Sbjct: 190 GFEDGRADEGPGAGEASLVGLRIAREHGWS 219 >gi|219847962|ref|YP_002462395.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aggregans DSM 9485] gi|219542221|gb|ACL23959.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aggregans DSM 9485] Length = 230 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E + +I+RY R SAV+PLL AQ+ G+++ AI VA IL++ V Sbjct: 1 MTLRETHQTEIESIIARYAGKR--SAVLPLLYLAQDTYGYLTDDAIREVAAILELPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ FYT F PVGT +QVC PC G E+LI + + DG + Sbjct: 59 YEVVGFYTLFYDRPVGTW-VLQVCDDVPCCYCGAEELIAALKQTLGINEEETTPDGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + V+C AC AP++ + D+TPER++ ++ + + G R + Sbjct: 118 QRVKCLAACDRAPVLQANLNYVYDVTPERVQTLLADLRARAAEARKQG-VSGRFA 171 >gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256] gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256] Length = 157 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ + +YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAESLKQIDIELVKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491] gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491] gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M0579] gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis M01-240149] gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis NZ-05/33] Length = 157 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGISYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156 >gi|292492185|ref|YP_003527624.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] gi|291580780|gb|ADE15237.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus Nc4] Length = 155 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S+E + +YP + Q+A + L Q + GWVS + VA IL M+ + Sbjct: 1 MMLSDEERKEIETEFKQYP--QKQAASVEALKIVQRRHGWVSDPHLREVAQILGMSAEEL 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY PVG R + +C + C + G ++L + +N++ + DG + Sbjct: 59 DGVATFYNLIFRRPVG-RHAILLCNSVSCWIMGYDRLYQHLQNRLGIGLGETSKDGRFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +AP++M+ +D + DL PE+++EI+ + Sbjct: 118 LPTCCLGDCNHAPVMMVDEDLHRDLAPEKVDEILGRYQ 155 >gi|71906592|ref|YP_284179.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB] gi|71846213|gb|AAZ45709.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB] Length = 157 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E+ +++YP + QSA + L AQE++GW++ +IE VAN L M I E Sbjct: 2 FSAETLQKFAREVAKYPADQKQSASMACLAHAQEEKGWLAPESIEAVANYLGMPPIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + L PVG + + VC PC L G E ++K+ DG + +E Sbjct: 62 VASFYNMYDLKPVG-KYKITVCTNLPCALSGGYHAGEYLQHKLGVGYGETTPDGKFTLKE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 EC GAC +AP+ ++ + PE+++++++ Sbjct: 121 GECMGACGDAPVFIVNNRSMCSHMHPEQIDKLLEECK 157 >gi|284992921|ref|YP_003411475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus obscurus DSM 43160] gi|284066166|gb|ADB77104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus obscurus DSM 43160] Length = 341 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E+ + E+I+RYP R SA++P+L Q +G+V+ + + A L + V Sbjct: 31 LTEQVRLEAREIIARYPQPR--SALLPMLHLVQSHQGYVTPEGVALCAEELGLTKAEVGA 88 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFYT ++ P G R V VC T C + G +++ + + +DG+++ E Sbjct: 89 VATFYTMYKRRPTG-RHLVSVCTNTLCAVLGGQRIFDALSRDLGVHHDETAADGSVTLEH 147 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 EC AC AP+V + + Y+ + E++ A G+ G Sbjct: 148 AECLAACDYAPVVTVDYEFYDQQDVDSARELVAALRRGEKPHPTRG 193 >gi|156741305|ref|YP_001431434.1| NADH-quinone oxidoreductase subunit E [Roseiflexus castenholzii DSM 13941] gi|156232633|gb|ABU57416.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus castenholzii DSM 13941] Length = 174 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S E+ + +I+RYP +SAV+PLL AQ++ G+++ AA+ VA +LDM V Sbjct: 1 MSLIEKYGAEIESIIARYP--HKRSAVLPLLFIAQDEYGYLTDAAMREVATLLDMPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FY+ PVG R +QVC PC G E LI + K+ DG + Sbjct: 59 FEVAGFYSLLYEQPVG-RWVLQVCDDVPCAFCGAEDLIAALQAKLGIAVDQTTPDGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + V+C C +AP++ + Y DL TPE+++ ++ + ++ R + Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVDAVLAELRR-RAESGEKLSISGRYA 172 >gi|300246021|gb|ADJ94068.1| putative anaerobic benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 161 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + A+ + +V + Y + A+IP+L +AQE G++ + V+ L + ++ + T Sbjct: 12 KEALELEKVFAEY--RGKKGALIPVLQKAQEIYGYLPAEVLREVSRNLQIPVSKIFGVVT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY QF L P G R V+VC T C +RG K+ E I D ++E V C Sbjct: 70 FYAQFHLHPRG-RNIVRVCLGTACHVRGGAKISEAVTKAIGIIDGETTEDLRYTFESVAC 128 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP++M+ +T+ LTP+ ++ +++ + Sbjct: 129 LGACGLAPVMMVNDETHGRLTPDMVKGLLEQYK 161 >gi|255994341|ref|ZP_05427476.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989] gi|255993054|gb|EEU03143.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989] Length = 163 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ ++S Y + ++I +L + Q+ G++ I+ ++ + ++ +A Sbjct: 6 KKDFSKIDNILSEYAD--KEGSLITILQKTQDAYGYLPMDVIDYISEKTGIRAAKIYGVA 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF+L P+G + + +C T C + G + + EV ++ K DG + V Sbjct: 64 TFYSQFRLKPIG-KYLIMLCQGTACHVNGSDSVREVVSEHLNIKDGETTEDGVFTLNNVA 122 Query: 140 CQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFST 174 C G C AP++M+ G++TY LT +++ +++D Sbjct: 123 CLGCCSIAPVMMVQTVEGEETYGQLTKDKVIKLLDEIRA 161 >gi|304311498|ref|YP_003811096.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] gi|301797231|emb|CBL45451.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] Length = 167 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + + E + + Y R +A I L Q + GWV AI +A IL + Sbjct: 11 APYEMAAEDRAEIEHSLHHYDDPR--AASIDALKVIQRRHGWVPNNAIREIALILQIPDS 68 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY + SPVG R + VC + C L G E++ + ++ KP SD Sbjct: 69 DVEGVATFYNRIYRSPVG-RHVITVCDSIGCFLTGFEEVYAALQQRLGIKPGQTTSDNRF 127 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC P++MI DTY +LT ++L+ +++ ++ Sbjct: 128 TLIPTCCLGACDRGPVLMINDDTYFNLTVDQLDALLEKYA 167 >gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090] gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945] gi|239999840|ref|ZP_04719764.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18] gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140] gi|240081586|ref|ZP_04726129.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|240113868|ref|ZP_04728358.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae MS11] gi|240116599|ref|ZP_04730661.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID18] gi|240118823|ref|ZP_04732885.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID1] gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1] gi|240124362|ref|ZP_04737318.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID332] gi|240126574|ref|ZP_04739460.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-92-679] gi|240129039|ref|ZP_04741700.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-93-1035] gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|260439640|ref|ZP_05793456.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62] gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA 1090] gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945] gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291] gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02] gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19] gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11] gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18] gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1] gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332] gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679] gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035] gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2] gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62] Length = 157 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++GW++ I VA+ + + + E Sbjct: 2 LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae EF01-2] gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae EF01-2] Length = 165 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE + +++YP + QSAV+ L Q+++G VS + +VA+ L MA I V E Sbjct: 2 MSEATLARFAREVAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + VC PC LRG + ++ K+ DG + + Sbjct: 62 VATFYNMYNRQPVGQ-YKINVCTNLPCQLRGGRQALQHLERKLALASGGTTDDGLFTLQS 120 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGD 178 EC GAC +AP++++ T + ++L++++D + + Sbjct: 121 CECLGACADAPVLLVNDRTMCSFMDGDKLDQLVDGLRQARQE 162 >gi|296140855|ref|YP_003648098.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola DSM 20162] gi|296028989|gb|ADG79759.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola DSM 20162] Length = 237 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP R SA++PLL Q Q+G+++ A IE A L++ V+ +ATFY+ ++ P G Sbjct: 46 RYPEPR--SALLPLLHLVQSQDGYITPAGIEFCARTLELTAADVISVATFYSMYRRGPTG 103 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V VC TT C + G + ++ + +P DG ++ E +EC AC AP+VM Sbjct: 104 E-YLVGVCTTTLCAVLGGDAILSALCEHLGIEPGGTTDDGRVTVERIECNAACDYAPVVM 162 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + + ++D T ++D TG G Sbjct: 163 VNWEFFDDQTVASARALVDGLRTGTAPLPTRG 194 >gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Salinibacter ruber DSM 13855] gi|83757864|gb|ABC45977.1| NADH-ubiquinone oxidoreductase 24 kda subunit, putative [Salinibacter ruber DSM 13855] Length = 249 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 4/176 (2%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 + + F +++E + +YP Q+A++ +L AQE+ G+++ I++ Sbjct: 40 QDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLC 97 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A+ LDM + + +ATFY Q+ GT + VC C + G ++ K+ Sbjct: 98 ADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGVHA 156 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 DG + +E EC G+C +APM+ I +LTP+++++++++ G+ + Sbjct: 157 GETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVPS 212 >gi|159899602|ref|YP_001545849.1| NADH-quinone oxidoreductase subunit E [Herpetosiphon aurantiacus ATCC 23779] gi|159892641|gb|ABX05721.1| NADH-quinone oxidoreductase, E subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 2/171 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ ++E+++RYP R +SA++PLL AQ+ G + R +I VA ILD+ Y V E+ Sbjct: 4 EQHKAEIDEILARYPVDRKRSALLPLLYLAQDVYGRLDRDSIREVAEILDLPYTDVFEVV 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FYT F VG + + VC PC G E+L+ N++ K D + V+ Sbjct: 64 GFYTLFYNEEVG-KVVLDVCDDVPCCFCGAEELVADLENRLGIKAGETTKDKVFTLRRVK 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 C AC AP++ + + + P+++E ++ ++ +P R++ Sbjct: 123 CIAACDQAPVLQANLEFHNRVLPDKVEAMLAKLRN-DVESGKPVSISGRLA 172 >gi|164686660|ref|ZP_02210688.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM 16795] gi|164604050|gb|EDQ97515.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM 16795] Length = 191 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 4/155 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +E+I + S++IP++ Q + ++ + +A+ L + + +ATFY Sbjct: 38 YEKTDEIIELHGA--KASSLIPVMQDVQAEYRYLPGELLSYIADKLGIPLAKAYSVATFY 95 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141 F P G + ++VC T C +R + E + D + E V C Sbjct: 96 ENFSFDPKG-KYVIKVCDGTACHVRKSVPVREALEKHLGLGKGKQTTDDMMFTIEIVSCL 154 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP++ + + +TP++ EIID G+ Sbjct: 155 GACGLAPVMTVNDKVHPKMTPDKAVEIIDELKEGE 189 >gi|189426183|ref|YP_001953360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] gi|189422442|gb|ACD96840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] Length = 171 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 EVI +Y ++P+L Q+ G+V R ++ VA L++ ++ + TF Sbjct: 19 DLALAEEVIQKYKD--IPGNLMPVLQGIQDAYGYVPRITVDYVAERLNVYPSQIYGVLTF 76 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L P G + ++VC T C + G E++ E ++I D ++E V C Sbjct: 77 YAQFHLKPRG-KFIIRVCMGTACHVLGAERIKESFYDRIGIGHAETTPDRRFTFELVACL 135 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 GAC AP+ M+ +TY +T ++++EII +S+ Sbjct: 136 GACGMAPLAMVNDETYGKMTVQKVDEIIKEYSS 168 >gi|298246354|ref|ZP_06970160.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM 44963] gi|297553835|gb|EFH87700.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 7/173 (4%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 SE++ + E+ RYP +R SAV+P L AQE+EG+++RA +E VA + M V + Sbjct: 3 SEKAKERMRELAKRYPAAR--SAVMPSLYIAQEEEGYITRAGLEAVAEAVGMTIDDVESV 60 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYT + G + V+VC + C LR C+ ++E ++ K DG + + V Sbjct: 61 ATFYTMYHKQAPGKK-IVKVCTSISCYLRNCDSVMEHLEQRLGIKRGETTPDGNFTLQGV 119 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 EC C AP++ + E++T E+ + +ID ++ G Q++ S Sbjct: 120 ECLATCGYAPVIQVNGQFVENVTLEKADALIDDLER----ELKQGKQVNESKS 168 >gi|148657774|ref|YP_001277979.1| NADH-quinone oxidoreductase subunit E [Roseiflexus sp. RS-1] gi|148569884|gb|ABQ92029.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus sp. RS-1] Length = 174 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S E+ + +I+RYP SAV+PLL AQ++ G+++ AA+ VA +LDM V Sbjct: 1 MSLIEKHGAEIEAIIARYP--HKPSAVLPLLFIAQDEYGYLTEAAMREVAELLDMPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FY+ PVG + +QVC PC G E LI + K+ DG + Sbjct: 59 FEVAGFYSLLYEQPVG-KWVLQVCDDVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + V+C C +AP++ + Y DL TPE++E+++ + ++ R + Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVEQVLAMLRQ-RAESGEQLSISGRYA 172 >gi|150375770|ref|YP_001312366.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium medicae WSM419] gi|150030317|gb|ABR62433.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae WSM419] Length = 169 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 3/154 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + +RYP R SA++P LM AQ++ G + +E VA IL + + V E+ TFY Sbjct: 4 REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELVTFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F P+G R H+Q+C CML G E L++ + K +DG + VEC G Sbjct: 62 TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLKHLETTLRIKKGETTADGVFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AC AP++ +G D + +L RLE ++++F + Sbjct: 121 ACEMAPVMQVGDDYHGNLDNARLEAMLESFRAAE 154 >gi|153807871|ref|ZP_01960539.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185] gi|149129480|gb|EDM20694.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185] Length = 158 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A + + ++ +I +L AQ +G++ ++A+ L + +V + TFY Sbjct: 11 AEQIKTICDKH--GNNPGELINILHEAQHLQGYLPEEIQRIIASKLGIPVSKVYGVVTFY 68 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F ++P G + + VC T C +RG EKL+E + + + DG S + + C G Sbjct: 69 TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP+VMIG+ Y L P +++II+ Sbjct: 128 ACGLAPVVMIGEKVYGRLQPVDVKKIIEDL 157 >gi|15836912|ref|NP_297600.1| NADH dehydrogenase subunit E [Xylella fastidiosa 9a5c] gi|28198175|ref|NP_778489.1| NADH dehydrogenase subunit E [Xylella fastidiosa Temecula1] gi|71897770|ref|ZP_00679996.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|182680809|ref|YP_001828969.1| NADH dehydrogenase subunit E [Xylella fastidiosa M23] gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase, NQO2 subunit [Xylella fastidiosa 9a5c] gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa Temecula1] gi|71732325|gb|EAO34379.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|182630919|gb|ACB91695.1| NADH-quinone oxidoreductase, E subunit [Xylella fastidiosa M23] gi|307579277|gb|ADN63246.1| NADH dehydrogenase subunit E [Xylella fastidiosa subsp. fastidiosa GB514] Length = 175 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 + + ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + Sbjct: 19 LGDRTRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVATFYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E++++++D Sbjct: 138 CEEECLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174 >gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis OX99.30304] Length = 157 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156 >gi|71275686|ref|ZP_00651971.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Dixon] gi|71897858|ref|ZP_00680084.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|170729493|ref|YP_001774926.1| NADH dehydrogenase subunit E [Xylella fastidiosa M12] gi|71163577|gb|EAO13294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Dixon] gi|71732413|gb|EAO34467.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa Ann-1] gi|167964286|gb|ACA11296.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa M12] Length = 175 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76 + + ++ ++++P + +SA++ L AQEQ +GW++ I VA LD+ + Sbjct: 19 LGDRTRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAY 78 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F+ VG R +V C C L G E L+ K+ K +DG + + Sbjct: 79 EVATFYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLK 137 Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C AC APM++I +E LT E++++++D Sbjct: 138 CEEECLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174 >gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822] gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella parapertussis] Length = 164 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GW+ +E VAN + + I V Sbjct: 1 MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVGT + VC PC LR EK + + K+ +DG + Sbjct: 61 QEVATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 E EC GAC ++P++++ +T E+L+ ++D + Sbjct: 120 IEGECMGACGDSPVLILNNKHMCVRMTEEKLDALVDGLKS 159 >gi|154249677|ref|YP_001410502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] gi|154153613|gb|ABS60845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium nodosum Rt17-B1] Length = 164 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E ++ I + +I +L +AQE GW+ + E VA L + V + Sbjct: 8 KELYEELDAYIDQVKD--KPGILIGVLHKAQELFGWLPQEVQEHVAERLGVPISEVYGVV 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + ++VC T C ++G ++++E ++ K DG S V Sbjct: 66 TFYNFFATKPKG-KNQIKVCLGTACYVKGADRVMERFLEELGVKAEEVTEDGLFSVHPVR 124 Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTG 175 C GAC AP+V++G+ D Y +TP+ + +II A+ G Sbjct: 125 CLGACSMAPVVLVGEKDFYGKVTPDMVSKIIAAYRRG 161 >gi|260892083|ref|YP_003238180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] gi|260864224|gb|ACX51330.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] Length = 149 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + EV+ Y +I L+ Q G++ A+ +A L + +V +ATF Sbjct: 2 EEAILEEVVRIY--RGKPEKLIAALLALQRHYGYLPEPALRTLAQELGVPLSKVYGVATF 59 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF+L P G + V VC T C +RG E++ + ++ +P +DG + E V C Sbjct: 60 YAQFRLKPRG-KHTVCVCLGTACHVRGSEQIFHALKRELGVEPGDTTADGRFTLEVVSCV 118 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+V++ ++T+ L PE+ ++ + Sbjct: 119 GACSMAPVVVVDEETHGRLDPEKALALLKKY 149 >gi|114566200|ref|YP_753354.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337135|gb|ABI67983.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 182 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 8/180 (4%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 +R E+ F + S V ++I + ++I +L +AQ+ G++ + ++ Sbjct: 8 KRAEEKSFLDAQLDLSP-----VLKIIE--EKRHEKGSLIAILQQAQDIYGYLPLSVLKC 60 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +A L + +V IATFYTQF+L P G + + C T C + G E++ ++ K Sbjct: 61 IARELGIKPAKVYGIATFYTQFRLQPAG-KYQIMFCQGTACHVNGSERIESTLCQELKIK 119 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 DG S E C G C AP++MI Y L+ E+ II + ++ G Sbjct: 120 RGETTPDGLFSLESAACLGCCSLAPVMMINGQAYGPLSAEKAIAIIRKIKAAESSSLVGG 179 >gi|328953056|ref|YP_004370390.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453380|gb|AEB09209.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 151 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +N ++SRY + +IP+L Q+ ++ + ++VVA L++ R+ +ATF Sbjct: 2 DLERLNGILSRY--DCQPADLIPVLQDIQDSYNYLPQDEMKVVAERLNIPLTRIFSVATF 59 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F L+P G + +VC T C L+G ++L E +++ + D + E V C Sbjct: 60 YKMFSLTPKG-KHICRVCLGTTCHLKGGQRLAESISHRLGVDIGYTTKDMRFTLETVGCL 118 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G+C AP++MI + +T +++ +I+ + Sbjct: 119 GSCAQAPVMMIDDTYHARVTVDKVPKILKKYQK 151 >gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera sp. 301] gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera sp. 301] Length = 157 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 2/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ +++YP + Q+AV+ L Q + GW+S+ +I VA L M I +E Sbjct: 2 LSPQATEKIDYELTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY + LSPVG + + +C CMLR ++++ + K+ DG +E Sbjct: 62 VASFYNMYDLSPVG-KYKITICTNISCMLRDSDEIVNHLKTKLGVGFNEVTPDGKFCLKE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 EC G C AP++ + D +E LT E+++ II Sbjct: 121 GECMGCCGGAPLMHVNNTDMHEFLTVEKVDAIIGELK 157 >gi|320449686|ref|YP_004201782.1| NADH-quinone oxidoreductase subunit E [Thermus scotoductus SA-01] gi|320149855|gb|ADW21233.1| NADH-quinone oxidoreductase, subunit E [Thermus scotoductus SA-01] Length = 181 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 2/162 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ ++ E ++YPP +SA++PLL R Q++EGW+ IE +A ++ V Sbjct: 1 MGFFDDKQDFLEETFAKYPPEGRRSAIMPLLRRVQQEEGWIRPERIEEIAQLVGTTATEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +A+FY+ +Q P G R H+QVC T C L G ++L + + P DG S Sbjct: 61 MGVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTETLGIGPGEVTPDGLFSV 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP+V + + Y E +T RLE +++ G+ Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLEALLEGLKAGK 161 >gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6] gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6] Length = 175 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS + +++YP + QSAV+ L AQ+ GWVS A + +A+ L M I V E Sbjct: 13 FSAATLERFAREVAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHE 72 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY + PVG + VC PC+LR + +E K+ + +DG + ++ Sbjct: 73 VTTFYNMYNQQPVGQ-FKLNVCTNLPCLLRNGQAALEHLCQKLGVEDGGTTADGLFTVQK 131 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 EC GAC +AP++++ ++ ++L++++D Sbjct: 132 CECLGACADAPVMLVNDRQMISYMSHDKLDQLVDTLKA 169 >gi|92115244|ref|YP_575172.1| NADH-quinone oxidoreductase, E subunit [Chromohalobacter salexigens DSM 3043] gi|91798334|gb|ABE60473.1| NADH dehydrogenase subunit E [Chromohalobacter salexigens DSM 3043] Length = 171 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 +F +E + YP Q+A I L Q + GWV AAI+ +A Sbjct: 8 TATPIATDAFVLHDEDRAAIAHERDHYP--HPQAASIEALKIVQRRHGWVPDAAIDAIAR 65 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 L ++ V +ATFY+ PVG R + +C ++ C L E L + + Sbjct: 66 ELGVSPASVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTDYEALRDAFFEHLGIGFGQ 124 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG + V C GAC P +MIG DT+ + PE + +++A++ Sbjct: 125 TTPDGRFTLLPVCCLGACDRGPALMIGDDTHGPVAPEEIPTLLEAYA 171 >gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter tengcongensis MB4] gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter tengcongensis MB4] Length = 169 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F ++ + I Y ++I ++ AQE G++ ++ + + + Sbjct: 16 KFGKDKVEKFKKSIENYRE--IPGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIF 73 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 I+TFY++F L P G + + +C T C +RG L+E + K+ + DG S E Sbjct: 74 GISTFYSRFTLKPSG-KYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLE 132 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++MI + + LTP ++EI+ F Sbjct: 133 PTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKF 168 >gi|148379809|ref|YP_001254350.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153934211|ref|YP_001384107.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936196|ref|YP_001387647.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289293|emb|CAL83389.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152930255|gb|ABS35755.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A str. ATCC 19397] gi|152932110|gb|ABS37609.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A str. Hall] gi|322806086|emb|CBZ03653.1| NAD-reducing hydrogenase subunit HoxE [Clostridium botulinum H04402 065] Length = 159 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E I+ S + ++I +L +AQ G++ E VA LD++ +V + TFY+ Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDISVSKVYGVITFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + VC T C ++G ++ NK++ K DG + + + C GA Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFENKLNIKVGETTKDGKFTLQVLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V I Y T ++++++ + Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159 >gi|256544553|ref|ZP_05471926.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) [Anaerococcus vaginalis ATCC 51170] gi|256399878|gb|EEU13482.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit E) [Anaerococcus vaginalis ATCC 51170] Length = 177 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 16 FSFS-EESAIWVNEV---ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 F F EE+ +NE I + + ++P+L AQ G++ +E+++N L++ Sbjct: 19 FVFDKEENREKINEFKKFIEK--NKDRKGPLMPILQEAQSIFGYLPDEMMELISNKLNIP 76 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V +ATFY+QF P G + + +C T C ++G ++ ++ K DG Sbjct: 77 LAEVYGVATFYSQFTFVPKG-KTDIHICLGTACYVKGAADILNEFEQRLGIKKGETTPDG 135 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 S E C G C AP+V I + E T + + ++++ Sbjct: 136 KFSISETRCLGNCGAAPVVEINGEQVEHFTKDDVSKVLEE 175 >gi|330981368|gb|EGH79471.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q++ GWV AI + ++L + Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E +++ ++ + +D Sbjct: 64 PASDVEGVATFYSQIFPQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G + V C G C AP VM+ DT+ D+ P + ++++ + Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164 >gi|153939211|ref|YP_001391109.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152935107|gb|ABS40605.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319155|gb|ADF99532.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 159 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+ Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + VC T C ++G ++ K++ K DG + + + C GA Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V I Y T + ++++ + Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVNKVLEEYGA 159 >gi|288572801|ref|ZP_06391158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568542|gb|EFC90099.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 163 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E ++ ++ RY + IPLL Q++ G+V+ A+ V+ +D++ + + Sbjct: 9 SNELTQRLDPIVQRY--QGKKGITIPLLADIQKEYGYVAEEAVTYVSRKMDISASEMFGV 66 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY F+L P G + +++C T C ++G + E + + DG + + V Sbjct: 67 ATFYAMFRLQPEG-KYVIRICRGTACHVQGSASVAEEVARHLGIEEGETTEDGIFTLQHV 125 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP++M+G + + LTP + EI++ + Sbjct: 126 ACLGCCSLAPVMMVGDNVHGLLTPPKSIEILEDYRK 161 >gi|270297047|ref|ZP_06203246.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273034|gb|EFA18897.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 158 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + ++ +I +L AQ G++ ++A L + RV + TFYT Sbjct: 12 KQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRIIAAQLGIPVSRVYGVVTFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F + P G + + VC T C +RG EKL+E + + + DG S + + C GA Sbjct: 70 FFTMLPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP+VMIG+ Y L P +++I++ Sbjct: 129 CGLAPVVMIGEKVYGRLQPIDVKKILEEL 157 >gi|294102541|ref|YP_003554399.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium colombiense DSM 12261] gi|293617521|gb|ADE57675.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium colombiense DSM 12261] Length = 156 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 18 FSEESAIWVN---EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S+ + E+++ P + +IP+L AQ + G++ +E ++ L + Sbjct: 1 MSQVELKKIQKTREIVA--PWKGKKGGLIPILQEAQHEFGYLPPEVMETISKELKIPKAE 58 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + +ATFY QF L P G R ++VC T C +RG K++E + D + Sbjct: 59 IYGVATFYAQFHLKPRG-RHVIRVCRGTACHVRGSLKILEKVKELTGVSENETTDDLRFT 117 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E V C GAC AP++M+ T+ L P+ + ++ F Sbjct: 118 IEPVACLGACGLAPVMMVDSQTFGRLAPDMVAGVLAKF 155 >gi|291530734|emb|CBK96319.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum 70/3] Length = 143 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 Q A++P+L +AQE G++ ++A + + +V ++TFY+QF L P G + + Sbjct: 8 QQGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKIS 66 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C ++G + K+ DG S + C GAC AP++ + D Y Sbjct: 67 VCLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVY 126 Query: 158 EDLTPERLEEIIDAFST 174 LT + ++ I+ ++ Sbjct: 127 GKLTVDEIDGILAKYTE 143 >gi|310828876|ref|YP_003961233.1| NADH dehydrogenase I [Eubacterium limosum KIST612] gi|308740610|gb|ADO38270.1| NADH dehydrogenase I [Eubacterium limosum KIST612] Length = 172 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ V+ Y ++I +L +AQE G++S + ++ D+ ++ +ATFY Q Sbjct: 23 ELDAVLDAYAD--VAGSLITILQKAQETYGYLSPDLMLYISRETDIPVAKIYGVATFYAQ 80 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+++PVG + + +C T C + G + E + K DG + E V C G C Sbjct: 81 FRMNPVG-KHLIMLCQGTACHVNGSSMIEEAVVEHLGIKEGETTEDGLFTLENVACLGCC 139 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 +P++MI +TY LT +++ I+ + Sbjct: 140 SLSPVMMIDGETYGQLTKDKVVNILTELKEQEA 172 >gi|150026259|ref|YP_001297085.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum JIP02/86] gi|149772800|emb|CAL44284.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum JIP02/86] Length = 176 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 2/170 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVAN 66 E+ + + +E + E+ S YP + +SA++P+L Q+ W+S + VA Sbjct: 2 EKTNIKQTINITEALMTRIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAE 61 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 IL + + V E+ +FYT + P+G + + C T+PC L G E L++ +K+ K Sbjct: 62 ILHIKPVEVYEVVSFYTMYNRRPIG-KYMFEFCQTSPCCLNGTENLMDYTCDKLGVKVGE 120 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +DG VEC GAC APM+ +G E LT +++++I + Sbjct: 121 PTADGLFEVRGVECLGACDYAPMMQLGDFYQEHLTEAKIDQLIADCKDNK 170 >gi|118602279|ref|YP_903494.1| NADH-quinone oxidoreductase, E subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567218|gb|ABL02023.1| NADH dehydrogenase subunit E [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 157 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + ++ I++YP R SAV+ L Q E E +S I+ VA+ LDM I V E+AT Sbjct: 6 AKKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVAT 65 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY + VG + ++ C CML G + LI NK+ + DG +S ++VEC Sbjct: 66 FYENYNHKKVG-KYVIRFCHNISCMLNGADDLIAYLENKLGVQTDEVTPDGLISVKKVEC 124 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GACV APM I + +E+LT +++++I+D Sbjct: 125 LGACVGAPMFQINDEYFENLTFDKIDKIVDNLK 157 >gi|226949093|ref|YP_002804184.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|226840738|gb|ACO83404.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 159 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E I+ S + ++I +L +AQ G++ E VA LD+ +V + TFY+ Sbjct: 12 KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + VC T C ++G ++ K++ K DG + + + C GA Sbjct: 70 YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V I Y T + ++++ + Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVAKVLEEYGA 159 >gi|160887579|ref|ZP_02068582.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483] gi|260171117|ref|ZP_05757529.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|156107990|gb|EDO09735.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483] gi|295087524|emb|CBK69047.1| NADH dehydrogenase subunit E [Bacteroides xylanisolvens XB1A] Length = 162 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + A + + ++ +I +L AQ +G++ ++A+ L + +V + T Sbjct: 13 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT F ++P G + + VC T C +RG EKL+E + + + DG S + + C Sbjct: 71 FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+VMIG+ Y L P +++II+ Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161 >gi|330503268|ref|YP_004380137.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01] gi|328917554|gb|AEB58385.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01] Length = 164 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q+Q GWV A + + IL + Sbjct: 5 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAADAIGEILGI 62 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ + ++ SD Sbjct: 63 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVVSEMQKQLGIGLGQTTSD 121 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + V C G C AP +MI DT+ D+ P+ + ++++ + Sbjct: 122 ERFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEDYK 164 >gi|294506288|ref|YP_003570346.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber M8] gi|294342616|emb|CBH23394.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber M8] Length = 225 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 4/176 (2%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 + + F +++E + +YP Q+A++ +L AQE+ G+++ I++ Sbjct: 16 QDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLC 73 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A+ LDM + + +ATFY Q+ GT + VC C + G ++ K+ Sbjct: 74 ADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGVHA 132 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179 DG + +E EC G+C +APM+ I +LTP+++++++++ G+ + Sbjct: 133 GETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVPS 188 >gi|218510339|ref|ZP_03508217.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Brasil 5] Length = 172 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 7 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML E L+ + K D + VEC G Sbjct: 65 TLFHSEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 123 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 AC AP++ +G D + L R++ ++ T G G D S+AP Sbjct: 124 ACEMAPVMQVGDDYHGGLDIARIDALLAKLRTEAGQ----GAGADLASAAP 170 >gi|269791765|ref|YP_003316669.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099400|gb|ACZ18387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 174 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + E I + P + + +I +L +AQE G++ VA L++ +V + T Sbjct: 12 QQFRELEEFIDKLPNKKGE--LITVLHKAQEIFGYLPEEVQAFVARKLEIPLAKVYGVVT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+ F + P G + V VC T C +RG E ++ + K + DG S + + C Sbjct: 70 FYSFFTMEPKG-KVAVSVCMGTACYVRGAEDVLHELEKAMGVKAGKVSEDGYFSLDTLRC 128 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+V++ + +TP + I+D + Sbjct: 129 VGACGLAPVVIVNGRVFGRVTPADVPGIVDQYR 161 >gi|169629224|ref|YP_001702873.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium abscessus ATCC 19977] gi|169241191|emb|CAM62219.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium abscessus] Length = 247 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 3/158 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 E++ RYP R SA++PLL Q ++G+V+ A IE A +++ V +A+FY+ + Sbjct: 37 AKEILDRYPSRR--SALLPLLHLVQSEDGYVTTAGIEFCARQVELTSAEVTAVASFYSMY 94 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G V VC T C + G + ++ ++ +P DG ++ E +EC C Sbjct: 95 RREPTGD-YLVGVCTNTLCAVLGGDAILARLAGELGVRPGGTTEDGKVTLEHIECNAGCD 153 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 AP++M+ + +++ TP+ ++ G R G Sbjct: 154 YAPVLMVNWEFFDNQTPDGAAALVQGLRRGHVPAPRRG 191 >gi|302388829|ref|YP_003824650.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM 16646] gi|302199457|gb|ADL07027.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM 16646] Length = 175 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 4/173 (2%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 EE F E + +V+ Y ++I +L + Q+ G++ R A+ +A Sbjct: 6 GEEHGIEKKFPDDEVDLSALEQVLKEY--RGVPGSLITVLQKVQDIYGYLPRKALYHIAR 63 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 + + +V +ATFY QF+L P+G + + VC T C + G E + +++ K Sbjct: 64 EIGVKPAKVFGVATFYAQFRLKPIG-KHLIMVCHGTACHVNGAELITSALCDELKIKDGE 122 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQGD 178 +DG + + V C G C AP++MI + Y LTP++ ++I D + G Sbjct: 123 TTADGLFTLQNVACLGCCSLAPVMMIDGEAYGKLTPDKARDVIRDIYKRETGK 175 >gi|293371346|ref|ZP_06617783.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CMC 3f] gi|298481912|ref|ZP_07000101.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22] gi|315919437|ref|ZP_07915677.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|292633706|gb|EFF52261.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CMC 3f] gi|298271776|gb|EFI13348.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22] gi|313693312|gb|EFS30147.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 158 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + A + + ++ +I +L AQ +G++ ++A+ L + +V + T Sbjct: 9 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 66 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT F ++P G + + VC T C +RG EKL+E + + + DG S + + C Sbjct: 67 FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 125 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+VMIG+ Y L P +++II+ Sbjct: 126 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157 >gi|261346154|ref|ZP_05973798.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541] gi|282565807|gb|EFB71342.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541] Length = 179 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F ++E + Y +R +A I L Q+ GWV AI +A +L + Sbjct: 24 GFILTDEERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIAEVLGIPASD 81 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C + G + L +++ +P DG + Sbjct: 82 VEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTTEDGRFT 140 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P +MI +DT+ + PE ++++++ + Sbjct: 141 LLPTCCLGNCDKGPSMMIDEDTHTHVQPENIQKLLEQY 178 >gi|164686659|ref|ZP_02210687.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM 16795] gi|164604049|gb|EDQ97514.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM 16795] Length = 166 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +SA+I +L AQ G++ + +A+ L ++ +V + +FY+ F +P+G + V Sbjct: 27 ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIGE-YKISV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +K++ ++ K D + E + C GAC AP+V++ Y Sbjct: 86 CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145 Query: 159 DLTPERLEEIIDAFSTGQ 176 TP+ + +I+D + + Sbjct: 146 QATPDDVSKILDNYRNLE 163 >gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234] gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234] Length = 170 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L+ AQ++ G + +E VA+IL + I V E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVG H+Q+C CML G E L++ + + + + VEC G Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCGSEALLKHLETVLEIRKGDTTPNRLFTLSTVECLG 120 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 AC AP++ +G D + +L RL+ ++D G I Sbjct: 121 ACEMAPVMQVGDDYHGNLDTGRLDALLDRLRAEAGQVI 158 >gi|237722432|ref|ZP_04552913.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] gi|229448242|gb|EEO54033.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] Length = 158 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A V + ++ +I +L AQ G++ ++A+ L++ +V + TFY Sbjct: 11 AEQVRTICDKH--GNNPGELINILHEAQHLHGYLPEEMQRIIASKLNIPVSKVYGVVTFY 68 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F ++P G + + VC T C +RG EKL+E + + + DG S + + C G Sbjct: 69 TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP+VMIG+ Y L P +++II+ Sbjct: 128 ACGLAPVVMIGEKVYGRLQPIDVKKIIEEL 157 >gi|206901474|ref|YP_002251394.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum H-6-12] gi|206740577|gb|ACI19635.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +++ +P R +I +L Q + +++ I+ A L + V +A+FY+ Sbjct: 5 QKILESFP--RDPDYIIEILHELQNRNPYNYLTPEDIKACAEYLGLPVSYVEGVASFYSM 62 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G R +++C + PC L G E L+E K++ K D + E C G C Sbjct: 63 FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLEKKLNIKVGETTEDKLFTLELTSCLGVC 121 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171 AP +MI + Y +LT E++++I++ Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEE 148 >gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E; NDH-1, chain E) [Neisseria meningitidis WUE 2594] Length = 157 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKFGISYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156 >gi|299146442|ref|ZP_07039510.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23] gi|298516933|gb|EFI40814.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23] Length = 162 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + A + + ++ +I +L AQ +G++ ++A+ L + +V + T Sbjct: 13 DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT F + P G + + VC T C +RG EKL+E + + + DG S + + C Sbjct: 71 FYTFFTMIPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+VMIG+ Y L P +++II+ Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161 >gi|253702591|ref|YP_003023780.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] gi|251777441|gb|ACT20022.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 168 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 N +I +Y ++P+L Q+ G++ R I++VA L++ ++ + TF Sbjct: 15 DLAEANHIIDKYLT--LPGNLMPVLQGIQDAYGYIPRPTIDLVAERLNVYPSQIYGVLTF 72 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L P G + ++VC T C ++G E++ E ++ ++D ++E+V C Sbjct: 73 YAQFHLKPRG-KYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACL 131 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+ M+ DTY +T ++++EII+ ++ Sbjct: 132 GACGMAPLAMVNDDTYGKMTVQKVDEIIETYN 163 >gi|158321274|ref|YP_001513781.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158141473|gb|ABW19785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 157 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+E+ + EVI + ++ ++P+L AQ+ G +S + ++ + + + Sbjct: 6 LSKENFEKLYEVIKEHKDTK--GPLMPVLHEAQKIFGCISLEVQKEISGKMSVPLSEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+QF L P G + H+ VC T C +RG + +I+ + +SDG S E Sbjct: 64 VVTFYSQFTLEPKG-KYHIGVCLGTACYVRGSQAIIDKVTELTGVEIGKTSSDGRFSLEA 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ + + Y LT + I++ + Sbjct: 123 TRCIGACGLAPVLSVNDEVYGRLTANDIAGILEKY 157 >gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens T118] gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens T118] Length = 162 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 SEES + + +++YP + QSAV+ L Q++ G+VS + +VA L MA + V E+ Sbjct: 3 SEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHEV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY + PVG + + VC PC LR K ++ +K+ K DG + ++ Sbjct: 63 TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGGKALKHLEHKLDIKMGETTPDGMFTLQQC 121 Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174 EC GAC ++P++++ T ++ ++L++++D Sbjct: 122 ECLGACADSPVLLVNDQTMCSFMSDDKLDQLVDGLRA 158 >gi|269139727|ref|YP_003296428.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda EIB202] gi|267985388|gb|ACY85217.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda EIB202] gi|304559594|gb|ADM42258.1| NADH-ubiquinone oxidoreductase chain E [Edwardsiella tarda FL6-60] Length = 166 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ GWV AAI +A +L + V +ATFY+Q PVG R V+ Sbjct: 33 RAASIEALKIVQKEHGWVPDAAIGAIAEVLGIPAADVEGVATFYSQIFRQPVG-RHIVRY 91 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + + K++ +P DG + C G C P +MI D ++ Sbjct: 92 CDSVVCHINGYQGIKAALEQKLNIQPGETTFDGRFTLLPTCCLGNCDKGPNMMIDDDLHD 151 Query: 159 DLTPERLEEIIDAFS 173 LTPER E+++ + Sbjct: 152 HLTPERALELLERYK 166 >gi|116750129|ref|YP_846816.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699193|gb|ABK18381.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 151 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + + +R+ R + A+IP+L Q + G++ A++ A + + V ++TFY Sbjct: 2 KDKLQRIFTRH--DRKRDALIPVLQDIQGEFGYLPPHAMQAAARHCRTSAVEVYGVSTFY 59 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+ SPVG R V VC T C + G +++E C++++ +P DG + E V C G Sbjct: 60 AQFKFSPVG-RHTVTVCQGTACHVMGGHRILEECKSQLGVQPGQTTPDGMFTLETVACIG 118 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 AC +P V++ KDTY + PER+ EI++A Sbjct: 119 ACALSPAVVVDKDTYGRMKPERITEILNA 147 >gi|197120283|ref|YP_002140710.1| NADH dehydrogenase I subunit E [Geobacter bemidjiensis Bem] gi|197089643|gb|ACH40914.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem] Length = 169 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 N +I +Y ++P+L Q+ G++ R I++VA L++ ++ + TF Sbjct: 15 DLAEANHIIDKYLT--LPGNLMPVLQGIQDSYGYIPRPTIDLVAERLNVYPSQIYGVLTF 72 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y QF L P G R ++VC T C ++G E++ E ++ ++D ++E+V C Sbjct: 73 YAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACL 131 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+ M+ DTY +T ++++EII+ ++ Sbjct: 132 GACGMAPLAMVNDDTYGKMTVQKVDEIIETYN 163 >gi|237715805|ref|ZP_04546286.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407420|ref|ZP_06083968.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|294646921|ref|ZP_06724542.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CC 2a] gi|294810788|ref|ZP_06769434.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides xylanisolvens SD CC 1b] gi|229443452|gb|EEO49243.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354228|gb|EEZ03320.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|292637866|gb|EFF56263.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides ovatus SD CC 2a] gi|294441976|gb|EFG10797.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides xylanisolvens SD CC 1b] Length = 158 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + ++ +I +L AQ +G++ ++A+ L + +V + TFYT Sbjct: 12 EQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP+VMIG+ Y L P +++II+ Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157 >gi|301060599|ref|ZP_07201434.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] gi|300445302|gb|EFK09232.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] Length = 158 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 3/151 (1%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I +Y S+ + A+IPLL Q+ G+V A+++VA L + + + + TFYTQF L+ Sbjct: 11 LIEKY--SQKKGALIPLLQEIQDAYGYVPDDAVQLVAQELAIFPVEIYGVLTFYTQFYLT 68 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + ++VC T C + G + L + K+ + DG + E V C G C AP Sbjct: 69 PRG-KHTIRVCQGTACHVMGAKGLFDYLLEKLEVEEGETTKDGFFTVERVACLGCCGMAP 127 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 ++MI D Y T + +EE + + + ++ Sbjct: 128 VIMIDDDFYGRCTIQNIEETWNKYRSETAES 158 >gi|222053574|ref|YP_002535936.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32] gi|221562863|gb|ACM18835.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32] Length = 168 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 EE Q S + + +++ ++ ++P+L QE+ G+V + I++VA L Sbjct: 7 EELQAEEIDLSAANQV-IDKFLT------LPGNLMPVLQGIQEEYGYVPKPTIDLVAERL 59 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++ ++ + TFY QF L P G + ++VC T C ++G E++++ +K+H Sbjct: 60 NVYPSQIYGVLTFYAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETT 118 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D ++E+V C GAC AP+ M+ DT+ +T +++EEII +S Sbjct: 119 PDLRFTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEEIIADYS 163 >gi|293376705|ref|ZP_06622928.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sanguinis PC909] gi|325845177|ref|ZP_08168485.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sp. HGF1] gi|292644662|gb|EFF62749.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sanguinis PC909] gi|325488773|gb|EGC91174.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter sp. HGF1] Length = 158 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 S + E+ ++ I + ++P+L AQ+ G++ + ++N ++ R+ Sbjct: 5 SLTSENFNKLDVFIQSHLSETE--GLMPILHEAQDIFGYIPLEVQKFISNRTGISVSRIH 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+QF P G + VC T C ++G + +++ + ++ +P SDG S Sbjct: 63 GVVTFYSQFSTEPKGE-NVIGVCLGTACYVKGAQAILQKFKEELGIEPEQTTSDGKFSLV 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++ I D Y + ++ I+ ++ Sbjct: 122 ATRCIGACGLAPVITINDDVYGKMDASQVSSILKKYN 158 >gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27] gi|55980057|ref|YP_143354.1| NADH-quinone oxidoreductase subunit 2 [Thermus thermophilus HB8] gi|2499324|sp|Q56221|NQO2_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 2; AltName: Full=NADH dehydrogenase I chain 2; AltName: Full=NDH-1 subunit 2 gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109663|pdb|2FUG|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109671|pdb|2FUG|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109679|pdb|2FUG|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588589|pdb|3I9V|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588597|pdb|3I9V|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588605|pdb|3IAM|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588613|pdb|3IAM|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588621|pdb|3IAS|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588629|pdb|3IAS|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588637|pdb|3IAS|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588645|pdb|3IAS|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863605|pdb|3M9S|2 Chain 2, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863618|pdb|3M9S|B Chain B, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit NQO2 [Thermus thermophilus] gi|46197846|gb|AAS82258.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27] gi|55771470|dbj|BAD69911.1| NADH-quinone oxidoreductase chain 2 [Thermus thermophilus HB8] Length = 181 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 2/162 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V Sbjct: 1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +A+FY+ +Q P G + H+QVC T C L G E+L + + P DG S Sbjct: 61 MGVASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSV 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP++ + + Y E +T RLE ++ G+ Sbjct: 120 QKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161 >gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442] gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442] Length = 157 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ES ++ +++YP + +SA++ L AQ ++GW++ I VA+ + ++ + E Sbjct: 2 LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + ++ DG + E Sbjct: 62 VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGEITPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ +T E +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156 >gi|289641423|ref|ZP_06473587.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca glomerata] gi|289508759|gb|EFD29694.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca glomerata] Length = 270 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 1/168 (0%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +EE+ ++I+RYP +SA++PLL Q ++G V+ +E A++L + V Sbjct: 1 MPLTEETRAAAADIIARYPSGHSRSALLPLLHLVQAEDGCVTSEGVEFCASLLGITQAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFYT ++ PVG V VC C L G E++ ++ +DGT++ Sbjct: 61 SAVATFYTMYKRRPVGDW-LVSVCTNLSCALLGGEEVYARLSQELGVGHDQTTADGTITL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 E EC AC AP++ + + ++ + P+ EI++A G+ G Sbjct: 120 EHAECLAACDYAPVLTVNYEFFDQVDPQSASEIVEALRRGERPAPTRG 167 >gi|326791481|ref|YP_004309302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542245|gb|ADZ84104.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 165 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 4/157 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 ++ + + I+ P + A+I +L +AQ G++ + V L++ +V Sbjct: 9 KLTQSLYAELEQFINELPE--KKGALIAVLHKAQGLFGYLPKEVQMFVGEKLNIPVSQVY 66 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ F ++P G + + VC T C +RG +K+++ + ++ + +DG S + Sbjct: 67 GVVSFYSFFTMTPKG-KYPISVCLGTACYVRGADKVLDAFKKELGIEVGQTTADGRFSLD 125 Query: 137 EVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172 + C GAC AP+V+IG+ Y + + E +++I+ + Sbjct: 126 ALRCVGACGLAPVVLIGEKVYGRIGSAEEVKKILSEY 162 >gi|312878992|ref|ZP_07738792.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Aminomonas paucivorans DSM 12260] gi|310782283|gb|EFQ22681.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Aminomonas paucivorans DSM 12260] Length = 172 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + I P R + +I +L +AQ G++ VA LD+ +V + TF Sbjct: 9 QYQELGAFIDGLPEKRGE--LITVLHKAQGIFGYLPEEVQAFVAKKLDIPLAKVYGVVTF 66 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ F + P G + V VC T C +RG E+++ + K ++DG S + + C Sbjct: 67 YSFFTMVPKG-KVVVSVCMGTACYVRGAEEVLAELEKVLGIKAGQVSADGHFSLDTLRCV 125 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+V+I Y LTP ++ II + Sbjct: 126 GACGLAPVVIINGKVYGRLTPAQIPGIIAPYR 157 >gi|153007186|ref|YP_001381511.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter sp. Fw109-5] gi|152030759|gb|ABS28527.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. Fw109-5] Length = 188 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + EV+ RYPP R +A++P L QE G+++ A + A+ L + R E+ATFY F Sbjct: 42 LAEVLRRYPPDRKAAAMLPALRIGQEIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMF 101 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P+G R V+VC C L G ++L E ++K + DG ++ EVEC GAC Sbjct: 102 NTRPIG-RHLVEVCTNVSCCLTGGDRLFEYLKHKYGVTNGGTSQDGRVTLREVECLGACG 160 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 AP +++ ++ YE L P+++EEI+ Sbjct: 161 TAPAMLVDEEMYERLDPKKVEEILGRL 187 >gi|312878985|ref|ZP_07738785.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260] gi|310782276|gb|EFQ22674.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260] Length = 155 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE E+++ P + +IP+L AQ G++ A++ ++ L + + + Sbjct: 5 EEVVSRTREIVA--PWKGRKGGLIPILQGAQNAFGYLPAEALQTISEELTVPLAEIYGVV 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF L P G R ++VC T C +RG KL++ + + + D + E V Sbjct: 63 TFYAQFHLKPRG-RHIIRVCRGTACHVRGSLKLLQTVKESLKVEENGTTEDLRYTLEPVA 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++M+ DT+ L PE+L+EI+D + Sbjct: 122 CIGACGLAPVIMVDSDTHGRLVPEKLKEILDHY 154 >gi|329914960|ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] gi|327545010|gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium IMCC9480] Length = 159 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE + ++ +S++P + QSAV+ L AQ++ GW+S ++ +A+ L MA I V Sbjct: 1 MLLSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+A FY + SP G + + VC PC L G EK + K+ +DG + Sbjct: 61 QEVAAFYEMYNTSPTG-KFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 E EC GAC +AP++++ ++ ++++++++ Sbjct: 120 REGECMGACGDAPVMLVNNKRMCSWMSNDKIDDLVEELKK 159 >gi|148266250|ref|YP_001232956.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter uraniireducens Rf4] gi|146399750|gb|ABQ28383.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] Length = 168 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 4/162 (2%) Query: 13 PSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P+ +EE N++I ++ ++P+L Q++ G++ R I++VA L++ Sbjct: 5 PAEVLPTEEIDLAAANQIIDKFLT--LPGNLMPVLQGIQDEYGYIPRPTIDLVAERLNVY 62 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY QF L P G + ++VC T C ++G E++++ +K+H + D Sbjct: 63 PSQIYGVLTFYAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETSPDL 121 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++E+V C GAC AP+ M+ DT+ +T +++E II +S Sbjct: 122 RFTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEGIIADYS 163 >gi|226227805|ref|YP_002761911.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] gi|226090996|dbj|BAH39441.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] Length = 158 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 RYP S IP L R QE+ G+++ + I+ + L + ++V E+ FYTQ Sbjct: 10 EFERWKQRYPSDFTGSLTIPCLRRIQEERGYIADSDIDELVAYLGVPRMQVDEVIAFYTQ 69 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P+G +QVC C LRG E L+ K+ +P +DG + VEC +C Sbjct: 70 FTRVPLGNHH-LQVCHNLSCSLRGAEGLVGYLCAKLGIQPGETTADGKFTLSTVECLASC 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 APM+M+ +E+LTP ++ +++ S Sbjct: 129 GTAPMMMVNDTYHENLTPASVDALLEDLSK 158 >gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 162 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 ++ FS+ES +I ++P R S ++P L Q +G+V ++ +A+ + ++ Sbjct: 2 AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D Sbjct: 60 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + +EV+C GAC P+ I YE+LTPE +E+I+ Sbjct: 119 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSEL 158 >gi|253583177|ref|ZP_04860375.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833749|gb|EES62312.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 170 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + IS + +SA+I +L +AQE G++ E +A L++ +V + +FY Sbjct: 16 KELKSYISTFED--KKSALIIVLHKAQEIFGYIPAEVQEFIAEELEIPVAKVYGVVSFYN 73 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F + P G + + VC T C +RG K++E +++ DG S + + C GA Sbjct: 74 FFSMEPKG-KYQISVCTGTACYVRGAGKVLENLEKELNIGVGGVTKDGLFSLDCLRCVGA 132 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C AP+V++GK+ + + P ++++I+ + + Sbjct: 133 CGLAPVVIVGKEVHGKVKPTDIKKLIETYMEKE 165 >gi|222099433|ref|YP_002534001.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM 4359] gi|221571823|gb|ACM22635.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM 4359] Length = 170 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 23 AIWVNEVISRYPPS-RCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80 + E+I + S + +I L Q++ ++ A E+V+ L++ +V E+ T Sbjct: 15 REAIVEIIRKAKESAEERDILINTLHEIQKRFENFIPPEAAEIVSEELNVPLSKVYEVLT 74 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT F P G + ++VC + PC + ++++ + + D + E C Sbjct: 75 FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKETLKIDFGQTTPDNMFTLEMTSC 133 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 G C AP++M+ + Y ++TPE+++ +I+ + Sbjct: 134 LGLCGVAPVIMVNDEYYGNMTPEKVKNLINRLRGEE 169 >gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 164 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72 ++ FS+ES +I ++P R S ++P L Q +G+V ++ +A+ + ++ Sbjct: 4 AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +ATFYT + PVG + H+Q+C C L G + + E +K+ K D Sbjct: 62 AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + +EV+C GAC P+ I YE+LTPE +E+I+ Sbjct: 121 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSEL 160 >gi|164688082|ref|ZP_02212110.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM 16795] gi|164602495|gb|EDQ95960.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM 16795] Length = 166 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 17 SFSEESAIWVNEV---ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +F E++ +E+ I + +SA+I +L AQ G++ + +A+ L ++ Sbjct: 3 NFVEQNRKLFDELDNLIDSLEVA-DESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPS 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V + +FY+ F +P+G + VC T C ++G +K++ ++ K D Sbjct: 62 KVYGVVSFYSYFSTNPIGE-YKISVCLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKF 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + E + C GAC AP+V++ Y T + + +I+D + + Sbjct: 121 TLEGLRCVGACGLAPVVVVNGKVYGQATTDDVSKILDNYRNLE 163 >gi|146307438|ref|YP_001187903.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp] gi|145575639|gb|ABP85171.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp] Length = 170 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 Q F+ SE + + Y R +A I L Q+ GWV A E + +L + Sbjct: 11 IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKARGWVPDGASEAIGEVLGI 68 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V +ATFY+Q PVG R ++VC + C + G E ++ ++ +D Sbjct: 69 PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVLAEMHKQLGIGLGQTTAD 127 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C AP +MI DT+ D+ P+ + +++A+ Sbjct: 128 NRFTLLPVCCLGNCDKAPALMIDDDTFGDVRPDGVAALLEAY 169 >gi|310826463|ref|YP_003958820.1| HydC [Eubacterium limosum KIST612] gi|308738197|gb|ADO35857.1| HydC [Eubacterium limosum KIST612] Length = 156 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ V E+++ + ++ +L QE+ G++ + +A+ LD+ V +AT Sbjct: 8 DNLDVVKEIVAEHRD--VPGCLMQILQETQEKYGYLPIELQQTIADELDIPLTEVYGVAT 65 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+QF L P G + + VC T C ++G + +++ + + DG S + C Sbjct: 66 FYSQFTLKPKG-KYKIGVCLGTACYVKGSQAILDKVTDTLGLAVGDTTEDGKFSVDATRC 124 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++ I +D Y L+ +++I++ + Sbjct: 125 VGACGLAPVMSINEDVYGRLSVNEVKDILEKY 156 >gi|312200063|ref|YP_004020124.1| NADH-quinone oxidoreductase E subunit [Frankia sp. EuI1c] gi|311231399|gb|ADP84254.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EuI1c] Length = 274 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 1/152 (0%) Query: 32 RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 RYP R +SA++PLL Q +EG V+ I+ A L + V +A+FYT ++ PVG Sbjct: 53 RYPVGRQRSALLPLLHLVQAEEGCVTAEGIDFCAGQLGITAAEVQAVASFYTMYKRHPVG 112 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V VC C L G + + + K+ +DGT++ E EC AC AP++ Sbjct: 113 DW-LVSVCTNLSCSLVGGQDVYDRLSKKLGVGHDQTTADGTITLEHAECLAACDYAPVMT 171 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + + Y+ + E E I++A + G+ G Sbjct: 172 VNYEFYDGVDTEAAEGIVEALARGERPLPTRG 203 >gi|307297598|ref|ZP_07577404.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916858|gb|EFN47240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 164 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 4/158 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++E I +I +L +AQE G++S + V+ LD+ +V + Sbjct: 10 QQLYKELDEYIDS--VKGNTGVLINVLHKAQEIFGYLSEELQQHVSEKLDIPLSQVYGVV 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F + P G + ++VC T C ++G +K++E +++++ + SDG S V Sbjct: 68 TFYNFFSMKPKG-KNQIKVCLGTACYVKGADKILERLQDELNVEMNEPTSDGLFSIHAVR 126 Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTGQ 176 C GAC AP+V+IG D Y ++P+ + +I+D + + Sbjct: 127 CLGACSMAPVVLIGEDDYYGRVSPDEVSKILDKYRRAE 164 >gi|163848444|ref|YP_001636488.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aurantiacus J-10-fl] gi|222526372|ref|YP_002570843.1| NADH-quinone oxidoreductase subunit E [Chloroflexus sp. Y-400-fl] gi|163669733|gb|ABY36099.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aurantiacus J-10-fl] gi|222450251|gb|ACM54517.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus sp. Y-400-fl] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 4/175 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E + +++RY R SAV+PLL AQ+ G+++ AI VA ILD+ V Sbjct: 1 MTLLETHQAEIEAIVARYASKR--SAVLPLLYLAQDTYGYLTDEAIREVATILDLPPTDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ FYT F PVGT +QVC PC G E+LI + + + +DG + Sbjct: 59 YEVVGFYTLFYDRPVGTW-VLQVCDDVPCCFCGAEELISALKQALGIREEETTADGMFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + V+C AC AP++ D D+TPER+E +++ + + G R + Sbjct: 118 QRVKCLAACDRAPVLQANLDYVYDVTPERVEVLLNNLRARAAEARKRG-VSGRFA 171 >gi|218295764|ref|ZP_03496560.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23] gi|218243923|gb|EED10450.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23] Length = 181 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 2/162 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ ++ ++YPP ++A++PLL R Q++EGW+ +E +A ++ V Sbjct: 1 MGFFDDKKEFLEATFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERVEEIARLVGTTATEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +A+FY+ +Q P G R H+QVC T C L G ++L + ++ P DG S Sbjct: 61 MGVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTQELGIGPGEVTPDGLFSV 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP+V + + Y E +T RL+ +++ G+ Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKAGK 161 >gi|218961953|ref|YP_001741728.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] gi|167730610|emb|CAO81522.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) [Candidatus Cloacamonas acidaminovorans] Length = 158 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + ++++++++ + ++IPLL Q++ G++SR ++ +A+ +++ + +A Sbjct: 2 ENAYPELDKILAKFQD--KKGSLIPLLQEVQKERGYLSRETMQYLADKMEIPSAEIFGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138 TFY+ F+L P G + ++VC T C + + + + SD + EV Sbjct: 60 TFYSMFRLKPQG-KHLIRVCKGTACHVSDVDSIKNAIIEILQLPEGENTTSDMQFTVMEV 118 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C G C AP++MI TY L PE + I++ + G + Sbjct: 119 ACLGCCSLAPVIMIDGKTYGKLVPEAIPAILNQYKNGDSE 158 >gi|227488704|ref|ZP_03919020.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51867] gi|227542297|ref|ZP_03972346.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51866] gi|227091365|gb|EEI26677.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51867] gi|227181897|gb|EEI62869.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC 51866] Length = 245 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 19/207 (9%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + ++ + ++ + E+ RYP QSA++P+L Q +G VS + +A++L Sbjct: 21 DLADTTTNLTDADVADLKELAGRYPN--PQSALLPMLHLVQSVDGKVSGEGVRRIASLLH 78 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RN 128 M +V+ +ATFY+ + VG + V VC + C G + + + + + Sbjct: 79 MTEAQVIGVATFYSMYHTHEVG-KHLVGVCTSALCATMGGDIIYDAVKRHLELDGEEDTT 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-- 186 SDG + E +EC AC AP++M+ + +++TP++ EI+D GQ + GP+I Sbjct: 138 SDGMFTLERIECNAACDFAPILMLNWEYMDNMTPKKAIEILDKLRDGQEVSSTRGPKITS 197 Query: 187 -------------DRISSAPAGGLTSL 200 R P G SL Sbjct: 198 WRDNERVLAGFYDGRADEGPGAGPASL 224 >gi|311697063|gb|ADP99936.1| ATP synthase subunit E [marine bacterium HP15] Length = 158 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ A++P+L Q+ G++ +++ ++A L ++ V + +FY F Sbjct: 2 IERIVE--GLKHKPGALLPILHSVQDHFGYIPESSVPIIAEKLQLSRAEVHGVISFYHHF 59 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + PVG R V VC C G L E + ++ +SD + E V C G C Sbjct: 60 RSHPVGCR-VVHVCRAEACQAMGGRTLEEHIKARLGVDYHGTSSDNEFTLEPVYCLGNCA 118 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 AP + + D + +TP++ + ++D +T D ++ Sbjct: 119 CAPSIRVNDDIHGRVTPQKFDRLVDELTTTALDFVQ 154 >gi|149909801|ref|ZP_01898452.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36] gi|149807133|gb|EDM67089.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36] Length = 207 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 103/196 (52%), Gaps = 12/196 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + +++ YP R SA++P L AQ+ G++ A +A ILD+ I V E+A Sbjct: 12 AELTAPIADIVKCYPTQR--SAIMPALYLAQDTYGFLDETAYRAIAEILDIPEIWVFELA 69 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FYT ++ +G + ++Q+C PCMLRG L+ + ++ ++DG + VE Sbjct: 70 SFYTLYKNKKIG-KYNLQLCTNVPCMLRGAYDLLGHLQTRLGINKGDTSTDGLFTLTTVE 128 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---------TGQGDTIRPGPQIDRIS 190 C G+C AP +M+ + + +L+ ER+++++D S + + P +++ + Sbjct: 129 CIGSCDLAPAMMVNETYHTNLSKERVDKLLDQLSQSSIKPSVEESKSSVEKSKPSVEKNN 188 Query: 191 SAPAGGLTSLLDNNSK 206 ++ G ++ ++++ Sbjct: 189 ASTDKGPSTGTESSAG 204 >gi|332285013|ref|YP_004416924.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7] gi|330428966|gb|AEC20300.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7] Length = 164 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GWVS I VA L++ I V Sbjct: 1 MLLSEQAYQKIDRELTKFPSDQQQSAIMAALTIAQEEKGWVSTEVIADVAAYLNVPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F VG R + VC PC L K E + K+ DG + Sbjct: 61 QEVATFYNMFNTHQVG-RFKITVCTNLPCALSDGVKAAEYVKQKLGIDFHETTPDGLFTL 119 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 E EC GAC +AP++++ ++ E+++ ++D Sbjct: 120 MEGECMGACGDAPVMLMNNRHMCVRMSSEKIDAMLDELK 158 >gi|148269833|ref|YP_001244293.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila RKU-1] gi|170288519|ref|YP_001738757.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2] gi|281412284|ref|YP_003346363.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila RKU-10] gi|147735377|gb|ABQ46717.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila RKU-1] gi|170176022|gb|ACB09074.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2] gi|281373387|gb|ADA66949.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila RKU-10] Length = 157 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 23 AIWVNEVISRYPP-SRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80 + E++ + + + +I L Q++ ++ A E+VA L + RV E+ T Sbjct: 2 REVIVEIVQKAKETAEERDVLINTLHEIQKRFDNFIPPEAAEIVAEELGVPLSRVYEVLT 61 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FYT F P G + ++VC + PC + ++++ + + SDG + E C Sbjct: 62 FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKEILKIDFGQTTSDGLFTLEMTSC 120 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C AP++M+ + Y ++TP R++++ID Sbjct: 121 LGLCGVAPVIMVNDEYYGNMTPGRVKDLIDRLR 153 >gi|289523837|ref|ZP_06440691.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502927|gb|EFD24091.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 163 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S S + +++ RY + ++ LL+ QE+ +V A+ +A D+ RV Sbjct: 2 LSATSKEAIEDLLYRY--EKNPRFLLQLLLDVQERFRYVPTEAMRSIARYFDIPESRVFA 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY L P G + ++VC T C LRG ++++ K+ DG + E Sbjct: 60 VATFYKVLSLVPKGEK-TIKVCQGTACHLRGGKQVLSAIGEKLGIAAGETTEDGIFTLET 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C AP++M+G Y LT + + I++A Sbjct: 119 VNCLGCCAMAPVMMVGDKVYGKLTVDDVSRILEA 152 >gi|217968067|ref|YP_002353573.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM 6724] gi|217337166|gb|ACK42959.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 E++ +P R +I +L Q +++ I+ A L++ V +A+FY+ Sbjct: 5 QEILESFP--RDPDYIIEILHELQNNNPYNYLTPEDIKACAEYLELPVSYVEGVASFYSM 62 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G R +++C + PC L G E L+E K++ K D + E C G C Sbjct: 63 FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLERKLNIKVGETTEDRVFTLEVTSCLGVC 121 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171 AP +MI + Y +LT E++++I++ Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEE 148 >gi|310659597|ref|YP_003937318.1| NADH:ubiquinone oxidoreductase, chain e [Clostridium sticklandii DSM 519] gi|308826375|emb|CBH22413.1| NADH:ubiquinone oxidoreductase, chain E [Clostridium sticklandii] Length = 175 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ +I +Y + + A I +L QE+ G++ ++ +A M ++ +ATF Sbjct: 17 DLSLIDPIIEKY--GKIKGATITILQGVQEEYGYIPSESLTYIAQKTGMKEAKLYGVATF 74 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 YTQF+++PVG + + +C T C + G + + ++ D ++ V C Sbjct: 75 YTQFRMNPVG-KNLILLCQGTACHVNGASTIEKAICEELGITEGETTLDKIFTFTNVACL 133 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C AP++MI +TY LTPE+ E++ Sbjct: 134 GCCSLAPVMMINGETYAKLTPEKTVEVLRNLRK 166 >gi|148244393|ref|YP_001219087.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii HA] gi|146326220|dbj|BAF61363.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii HA] Length = 157 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80 + ++ I++YP R SAV+ L Q + +S + I+ VA+ LDM I V E+AT Sbjct: 6 AKNQIDVWIAKYPKDRQSSAVMQALKIVQAENKNILSASIIQEVADYLDMPDIVVQEVAT 65 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY + VG + ++ C CML G + LI+ NK+ K DG +S ++VEC Sbjct: 66 FYENYNYKKVG-KYVIRFCHNISCMLNGADDLIKHLENKLGVKTGEVTLDGLISVKKVEC 124 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GACV APM I + +E+LT +++++I+D Sbjct: 125 LGACVGAPMFQINEKYFENLTIDKIDKIVDNLK 157 >gi|257467681|ref|ZP_05631777.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061975|ref|ZP_07926460.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313687651|gb|EFS24486.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 164 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + IS + +S++I +L +AQE G++ E +A L++ +V + +FY Sbjct: 10 KELKSYISTFED--KKSSLIIVLHKAQEIFGYIPAEVQEFIAEELEVPVAKVYGVVSFYN 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F + P G + + VC T C +RG K++E +++ + DG S + + C GA Sbjct: 68 FFSMEPKG-KYQISVCTGTACYVRGAGKVLESLEKELNIEVGGVTKDGLFSLDCLRCVGA 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C AP+V++GK+ + + P ++++I+ + + Sbjct: 127 CGLAPVVIVGKEVHGKVKPTDVKKLIEEYMEKE 159 >gi|258593431|emb|CBE69770.1| NADH-quinone oxidoreductase subunit E 2 (NADH dehydrogenase I subunit E 2) (NDH-1 subunit E 2) [NC10 bacterium 'Dutch sediment'] Length = 171 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 6/157 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +EE+ + ++SRYP R SA++PL+ QE+ G+++ A+ +A LD+ I+V E Sbjct: 1 MTEET---IQRILSRYPERR--SALLPLMHLCQEEGGYLTADAMRELAARLDLPPIQVAE 55 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A FY F+L P G R + VC C L G E++I + DG + + Sbjct: 56 VAMFYDMFRLKPGGQR-EIWVCHNLSCALLGAEQVIRRLEEVLGVSAGETTPDGLFTIKR 114 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 VEC AC AP + +G D Y ++ +E ++ Sbjct: 115 VECLAACGRAPAIQVGSDYYGPVSHGEVETLVARLRK 151 >gi|300782455|ref|YP_003762746.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32] gi|299791969|gb|ADJ42344.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32] Length = 285 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F + E+I+RYP SR SA++P+L Q +G+VS+ I A LD++ Sbjct: 44 PLEDIFDADIHAKAQELIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCAKQLDLSD 101 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-----QKPLHR 127 V +ATFYT ++ P G V VC T C G + + + + + Sbjct: 102 AEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAAMGGDAIYKRLQTHLGSEAEPLGHNET 160 Query: 128 ----NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 N G+++ E EC AC AP++ + + +++ T E+ ++DA G+ G Sbjct: 161 AGTPNEPGSITLEHAECLAACDLAPVIQVNYEYFDNQTEEKAVALVDALQAGKKPAPTRG 220 Query: 184 -PQIDRISSA 192 P + + Sbjct: 221 APLTNFKGAE 230 >gi|189467140|ref|ZP_03015925.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM 17393] gi|189435404|gb|EDV04389.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM 17393] Length = 158 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A V + ++ +I +L AQ G++ ++A L++ RV + TFY Sbjct: 11 AEQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFY 68 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F ++P G + + VC T C +RG EKL+E + + + DG S + + C G Sbjct: 69 TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP+VMIG+ Y L ++++++ Sbjct: 128 ACGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157 >gi|281357848|ref|ZP_06244334.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281315795|gb|EFA99822.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 176 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 20 EESAIWVNEVISRY--------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 E +E + RY P R + ++I +L RAQ G++S VA L+++ Sbjct: 16 PEEQQKFDE-LERYIGTLQVGDNPDRRRGSLIQILHRAQHLFGYLSEEVQSFVAARLNIS 74 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 V + +FY+ F P+G R + VC T C ++G K+++ + ++ + DG Sbjct: 75 RAEVYGVISFYSYFIDQPIG-RYKINVCTGTACFVKGAPKVLDEFKRRLEIREGESTPDG 133 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP+VM+ + Y ++T E++ +I+ + Sbjct: 134 KFFLGALRCVGACSLAPVVMVNEKVYGNVTAEKVADILQDCA 175 >gi|256371184|ref|YP_003109008.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007768|gb|ACU53335.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 208 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 5/179 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F E A E++ YP R SAV+PL AQEQ+GW++ AI +A ++ V Sbjct: 4 FEGEFAARAEELVGLYPERR--SAVLPLCHLAQEQDGWLTPEAIRHIAELVGQTPAEVQG 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 A+FY L PVG R V +C C+LR ++L+E + DG ++ EE Sbjct: 62 AASFYDMLHLEPVG-RYVVGICTNIACLLRDGDRLLEAAEELLGVGVGGTTPDGLITLEE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ--GDTIRPGPQIDRISSAPA 194 VEC C AP V + + +TP EE++ G+ G+ G +AP Sbjct: 121 VECVAHCDKAPAVQVNYRYFGPVTPTSFEELVGQLRRGELDGEVPPHGVLSRVRRAAPP 179 >gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703 [Drosophila yakuba] Length = 155 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E+ F F+ E+ V ++S YP + A+IPLL AQ Q GW+ +A Sbjct: 31 LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA IL + +RV E+ATFYT F P G + H+QVC TTPC LRG + ++E C+ ++ Sbjct: 91 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149 Query: 121 HQKPL 125 Sbjct: 150 GIGVG 154 >gi|167752243|ref|ZP_02424370.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216] gi|167660484|gb|EDS04614.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216] Length = 164 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 3/161 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ + V +Y +I +L Q+ G++ + E++A L ++ RV Sbjct: 6 LSQRRIDEIKNVCRKYGND--PGELINILHGVQDTLGYLPKEVQELIALELGISAARVYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY+ F + P G + + VC T C +RG EK+++ R ++ + DG S + Sbjct: 64 VVSFYSFFTMKPKG-KYPISVCMGTACYVRGGEKVLDEFRRQLGIEVGGTTPDGLFSLDS 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 + C GAC AP+VMIG Y L ++ I+D + + Sbjct: 123 LRCVGACGLAPVVMIGPRVYGRLKVTDVKGILDEIQALEKE 163 >gi|257054396|ref|YP_003132228.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017] gi|256584268|gb|ACU95401.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017] Length = 253 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 13/191 (6%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 +P + F E ++ +RYP +R SA++P+L Q +G+VS+ I A LD+ Sbjct: 11 KPETDPFGPEIEEQAQQLAARYPQAR--SALLPMLHLVQSVQGYVSQEGIAFCARQLDLT 68 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-------- 123 V +ATFYT ++ P G V VC T C G +++ + + + Sbjct: 69 EAEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDEIYKRLSEHLGEDGKPLGHEE 127 Query: 124 -PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 G+++ E EC AC P++ + + +++ TPE+ E++DA G+ Sbjct: 128 TVGEPGEPGSITLEHAECLAACDFGPVLQVNYEYFDNQTPEKAVELVDALRRGEKPQPTR 187 Query: 183 G-PQIDRISSA 192 G P D S Sbjct: 188 GAPLTDFRSVE 198 >gi|224535654|ref|ZP_03676193.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus DSM 14838] gi|224522727|gb|EEF91832.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus DSM 14838] Length = 158 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + ++ +I +L AQ G++ ++A L++ RV + TFYT Sbjct: 12 EQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP+VMIG+ Y L ++++++ Sbjct: 129 CGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157 >gi|217077617|ref|YP_002335335.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217037472|gb|ACJ75994.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 162 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 22 SAIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLE 77 + + +++ R Q +I +L + QE + ++ A EVV+ L + ++ E Sbjct: 3 AKEEIKKIVHEAKNERLEEQDILIYILHKIQEKIENNYIPEYAAEVVSEELKIPTSKIYE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+ F G + ++VC + PC + ++I + ++ SDG + EE Sbjct: 63 VLTFYSMFSTKKRG-KYVIRVCTSLPCHVANGREIINTLKEELKIDFNQTTSDGLFTLEE 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C G C +P++MI + Y DLTP+++ EII+ G+ Sbjct: 122 SGCLGLCGVSPVIMINNEYYGDLTPQKVREIINNLKGGE 160 >gi|294056099|ref|YP_003549757.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita akajimensis DSM 45221] gi|293615432|gb|ADE55587.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita akajimensis DSM 45221] Length = 166 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E+ +++++ RYP R SA +PL QE +G++S AIE +A L++ I + Sbjct: 1 MNLKPETIEKIDKLVPRYPVMR--SAALPLCHLVQEDQGYLSPEAIEWIAERLELQPINI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 LEI TFY + P G + HV+VC T PC L G + +++ K H + DG ++ Sbjct: 59 LEIVTFYPMLRTEPTG-KYHVRVCRTLPCALSGAYQTCARLEEELNVKVGHTSEDGLVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 E VEC C AP+VM+G+D Y D+ P++ E+ +G+ Sbjct: 118 EYVECHADCGRAPVVMVGEDEYTDIDPDKAAELAAQMKSGE 158 >gi|193215668|ref|YP_001996867.1| NADH-quinone oxidoreductase subunit E [Chloroherpeton thalassium ATCC 35110] gi|193089145|gb|ACF14420.1| NADH-quinone oxidoreductase, E subunit [Chloroherpeton thalassium ATCC 35110] Length = 195 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P+ F + + SRYP + ++AV+ L AQ + GW+S A+++VA L+M Sbjct: 35 PAEIVFDDADLQQIEAYKSRYP--KKEAAVMRTLWLAQTKFGWLSEDALKLVAKTLEMPP 92 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V +A+FYT + P G + H+ VC C L G ++ + K + +DG Sbjct: 93 ADVFGVASFYTMYFKKPKG-KTHLAVCTNISCSLCGGYEIYNYLKEKFGLENGDVTADGK 151 Query: 133 LSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDA 171 LS EE EC G+C AP + + + E+LT E+LE + Sbjct: 152 LSLEEAECLGSCGTAPAMQVNNGEYVENLTVEKLEAFLKE 191 >gi|322421846|ref|YP_004201069.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320128233|gb|ADW15793.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 168 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 EE +E + ++I +Y ++P+L Q+ G+V + I++VA L Sbjct: 7 EEVPAEEIDLTEAN-----QIIDKYLT--LPGNLMPVLQGIQDAYGFVPKPTIDLVAERL 59 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++ ++ + TFY QF L P G R ++VC T C ++G E++ E ++ Sbjct: 60 NVYPSQIYGVLTFYAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETT 118 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D ++E+V C GAC AP+ M+ DT+ +T ++++EII+ ++ Sbjct: 119 EDLRYTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVDEIIETYN 163 >gi|310778427|ref|YP_003966760.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309747750|gb|ADO82412.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 162 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 EE ++E I Q A+I +L +AQE G++ + VA LD+ +V Sbjct: 6 QLKEECFKQLDEFILNLED--KQGALITVLHKAQEIFGYLPKEIQSFVAERLDLPLAKVY 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ F ++P G + + VC T C +RG K++E + ++ + SDG S + Sbjct: 64 GVVSFYSFFTMTPKG-KYPISVCMGTACYVRGAGKVLEDFQKQLGIEVGETTSDGIFSID 122 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C GAC AP+V++G+D + + ++ I+D + Sbjct: 123 ALRCVGACGLAPVVLVGEDVFGKDEAKDVKTILDTYKA 160 >gi|160936106|ref|ZP_02083479.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC BAA-613] gi|158440916|gb|EDP18640.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC BAA-613] Length = 171 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 3/160 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + E+ + Y + ++I +L AQ G++ +V+A+ LD++ V + Sbjct: 15 EALLKRIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPLEVQKVIADALDISLAEVSGVV 72 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F P G ++VC T C +RG +K++E + + + +D ++E Sbjct: 73 TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERLKELLDVEIGETTADRRFTFEVAR 131 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C GAC AP + I Y+ + P++LE+I++ + +G Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEGQE 171 >gi|325290780|ref|YP_004266961.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271] gi|324966181|gb|ADY56960.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271] Length = 161 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 + +I +L +AQE G +S + V++ L++ V +ATFY+QF+ +P+G R Sbjct: 24 NKKEPGNLITVLQKAQEIYGHLSEEIMRVISEKLEIPAAEVFGVATFYSQFRFTPMG-RN 82 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC T C +RG ++ + K DG + E V C GAC AP++ I Sbjct: 83 VIRVCMGTACHVRGALNVLRTIERGLGIKAGETTQDGRFTLETVACIGACGLAPVISINN 142 Query: 155 DTYEDLTPERLEEIIDAF 172 Y ++TP+ + + +D + Sbjct: 143 MVYGNMTPQAVMQTLDKY 160 >gi|254166690|ref|ZP_04873544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|289596481|ref|YP_003483177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum boonei T469] gi|197624300|gb|EDY36861.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|289534268|gb|ADD08615.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum boonei T469] Length = 149 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY Sbjct: 2 EEKVLQIINKHKN--KDSKLLAILHDVQDEFGYIPEEAIKTIAKELGMKKGEVYDAASFY 59 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F+ P G + V +C C ++G E++IE + K DG +++ VE G Sbjct: 60 SFFRFKPEG-KHEVMICDCIVCHIKGSERIIERIEKEFGVKMGETTKDGKFTFKIVEGLG 118 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169 C ++P++MI Y DLTP+++ EI+ Sbjct: 119 HCEHSPVMMIDGKIYGDLTPDKVVEIL 145 >gi|313679589|ref|YP_004057328.1| NADH dehydrogenase subunit e [Oceanithermus profundus DSM 14977] gi|313152304|gb|ADR36155.1| NADH dehydrogenase subunit E [Oceanithermus profundus DSM 14977] Length = 190 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV ++YP R +SA++PLL R Q+ EG+V ++ +A ++ V Sbjct: 1 MGFFDDKQEWLAEVFAQYPEDRRRSALMPLLRRVQQDEGYVDFERMKEIAELVGTTATEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ +Q P G + H+QVC T C L G ++L ++ P DG S Sbjct: 61 AGVMSFYSYYQGLPTG-KYHIQVCRTLSCKLAGADELWHTLTERLGILPGEVTPDGRFSL 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 + VEC G+C P++ +G + Y E +T RLE +++ Sbjct: 120 QAVECLGSCHTGPVIQVGDEPYVERVTKARLEALLEGL 157 >gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus mobilis Nb-231] gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus mobilis Nb-231] Length = 167 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76 S E ++ ++++P +SAVIP L AQE GW+SR +E VA L++ + V Sbjct: 11 LSAEQRSEIDHWLAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPPVAVY 70 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ TFY+ F L P G R V +C C+LRG E+++E NK+ +DG ++ + Sbjct: 71 EVGTFYSMFDLKPTG-RHKVNICTNISCLLRGAERIVEHVENKLGISVGETTADGRITLK 129 Query: 137 EVECQG------ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G AC APM+++ ++ + DLTPE+++EI+D Sbjct: 130 -----GEEECLAACAAAPMMLVDEEYHVDLTPEKVDEILDKL 166 >gi|149374624|ref|ZP_01892398.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola DG893] gi|149361327|gb|EDM49777.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola DG893] Length = 171 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 3/172 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+ + F + E ++ Y + Q+A I L Q + GWV A Sbjct: 2 MATTPQTHQIIGTDGFELHPADETAMLEEMAHY--EQPQAACIEALKVVQRRHGWVPDGA 59 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 I +A +L + V +ATFY+ PVG R V VC ++ C L G ++L + + + Sbjct: 60 IGAIAKVLGIGPASVEGVATFYSLIFRQPVG-RHVVLVCDSSSCFLSGFDELKQALASHL 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + V C GAC AP +MI DTY ++P+ L +++ + Sbjct: 119 GIDYGQTTEDGRFTLLPVCCLGACDGAPALMIDNDTYGPVSPDDLPGLLEGY 170 >gi|296134043|ref|YP_003641290.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR] gi|296032621|gb|ADG83389.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens JR] Length = 163 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +++VI Y + A+IP+L +AQE G++ ++ L + V + TF Sbjct: 13 QFAELDKVIEEYRGT--PGALIPVLHKAQEIFGYLPEEVQYRISQGLGLPLADVYGVVTF 70 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y++F L P G + + VC T C ++G +L+ ++ KP DG S E C Sbjct: 71 YSRFTLVPKG-KHDIGVCLGTACYVKGAGELVGWLDKELGLKPGGITRDGLFSLETTRCV 129 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+V IG++ LT E+ EII + Sbjct: 130 GACGMAPVVTIGEEVKGRLTVEQFSEIIREYQ 161 >gi|183599633|ref|ZP_02961126.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827] gi|188021885|gb|EDU59925.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827] Length = 180 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 +E Q F +E + Y R +A I L Q+ GWV AI +A + Sbjct: 19 PQETQ-HGFVLTEAERAEIEGEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIAEV 75 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + V +ATFY+Q PVG R ++ C + C + G + L N+++ +P Sbjct: 76 LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIINQLNIRPGQT 134 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +DG + C G C P +MI +DT+ + PE ++++++ + Sbjct: 135 TADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPEDIKKLLEQY 179 >gi|301059362|ref|ZP_07200289.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300446591|gb|EFK10429.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 162 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E + SR+ S+ +IP+L QE G++ +A ++ ++ + +A Sbjct: 12 DEENARFEGITSRHKDSK--GGLIPILHEVQELYGYLPDSAFVRISKTCNIPLSEIYGVA 69 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F L P G + + VC T C ++G ++++ R ++ DG S Sbjct: 70 TFYSFFSLKPKG-KYEISVCMGTACYVKGAGRILDRIREELDIDVGDCTEDGKFSLSACR 128 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ + + + L + E+++ + Sbjct: 129 CLGACGLAPVIKVNEQVHGRLALADVSEVLNQY 161 >gi|154495356|ref|ZP_02034361.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC 43184] gi|154085280|gb|EDN84325.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC 43184] Length = 165 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 25 WVNEVIS---RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++E+++ + +I +L AQ G++ R E++A L + +V + TF Sbjct: 12 KIDELLAVCDEHNND--PGELINILHAAQGIFGYLPREVQEIIAGRLYIPVSKVYGVVTF 69 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ F ++P G + + VC T C +RG EK++E + ++ K SDG S + + C Sbjct: 70 YSFFTMTPKG-KYPISVCLGTACYVRGAEKVLEEFQRQLEIKVGETTSDGLFSLDCLRCV 128 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+V I Y LTPE++ +I+ + Sbjct: 129 GACGLAPVVTIAGKVYGRLTPEKVRDILSEY 159 >gi|147677714|ref|YP_001211929.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273811|dbj|BAF59560.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 192 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 +V R+ E +++ +N +I + Q +I +L +AQ+ G++ Sbjct: 18 AVERIGRELQDDER----DKNFNELNLIIESLAGDKGQ--LIRILQKAQDIFGYLPDDVQ 71 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A L + V + TFY+ F P G + + VC T C ++G +++++ + ++ Sbjct: 72 AFIAERLRVPVAEVNGVVTFYSLFSTRPKG-KYIINVCMGTACYVKGAQQVMDALKKRLK 130 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 DG + + C GAC AP++ + + P +++E+I G+ + Sbjct: 131 IDEGETTPDGLFTLKSTRCVGACGLAPILAVNGKVQGMVDPGKIQELIKNCRKGEKNE 188 >gi|269469172|gb|EEZ80714.1| NADH dehydrogenase I chain E [uncultured SUP05 cluster bacterium] Length = 157 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLE 77 S ++ ++ +++YP + SAV+ L Q + +S AI+ VA+ LDM I E Sbjct: 3 STKAKKQIDSWVAKYPEGKQSSAVMEALKIVQAENDNTLSTDAIQAVADYLDMPGIAAAE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG + ++ C CML G + LI K+ K +G ++ ++ Sbjct: 63 VATFYENYNHKPVG-KHTIRFCHNISCMLNGADDLIAYLEKKLKVKTGEVTKNGLINVKK 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 VEC GACV APM IG YE+LT ++++EI+D Sbjct: 122 VECLGACVGAPMFQIGDQYYENLTKQKIDEIVDGLK 157 >gi|238023163|ref|ZP_04603589.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147] gi|237865546|gb|EEP66686.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147] Length = 157 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + +A + E Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMSALRIAQVEKGYLAPETIEFVAKYIGIAPVAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ +DG + E Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIDYGETTADGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172 EC GAC +AP++++ + + +E+ + Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMDADAIEKKLAEL 156 >gi|239816479|ref|YP_002945389.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110] gi|239803056|gb|ACS20123.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110] Length = 182 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 4/174 (2%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 S + +++YP + QSAV+ L Q+ EG++S Sbjct: 5 STHHDTAPSAPSAP--LKPAILERFAREVAKYPEAGKQSAVMACLAIVQQDEGFISMQRE 62 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 +A L MA I V E+ TFY + PVG + + VC PC LR + K+ Sbjct: 63 REIAEYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKLG 121 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174 K +DG + ++ EC GAC ++P++++ T ++ E+L+++ID Sbjct: 122 IKMGETTADGMFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIDGLRA 175 >gi|317401992|gb|EFV82592.1| respiratory-chain NADH dehydrogenase I [Achromobacter xylosoxidans C54] Length = 164 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V Sbjct: 1 MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATDIIEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVG + + VC PC LR E+ + + K+ +DG + Sbjct: 61 QEVATFYNMFDVKPVG-KTKIAVCTNLPCALRDGERAGDYLKRKLGVDYRETTADGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 E EC GAC ++P++++ +T E+L+ ++ A Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALKA 159 >gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter dehalogenans 2CP-C] gi|197124713|ref|YP_002136664.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K] gi|220919434|ref|YP_002494738.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|85777127|gb|ABC83964.1| NADH dehydrogenase subunit E [Anaeromyxobacter dehalogenans 2CP-C] gi|196174562|gb|ACG75535.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K] gi|219957288|gb|ACL67672.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 171 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + +++RYPP R +A+IP L QE G++S A + A L + R E+ATFY Sbjct: 24 ELAGILNRYPPDRKAAAMIPALRLGQEIFGYLSPAVQRLAAERLGTSPARAEEVATFYVM 83 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P R V+VC C L G E++ E + K+ DG ++ EVEC G+C Sbjct: 84 FHTEPP-ARHVVEVCTNVSCCLTGGERIFEHLKKKLELANGQSTRDGRITLREVECLGSC 142 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP +++ ++ +E LT +++++I+ Sbjct: 143 GTAPAMLVDEEMHERLTIQKVDQIVGGLK 171 >gi|223937080|ref|ZP_03628988.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514] gi|223894361|gb|EEF60814.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514] Length = 178 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 7/176 (3%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 S ++ +F +NE+++ YP R SA + L QE G+VS+ AI Sbjct: 6 STQQNRASVLSTGNFVVPPALEAELNELVTHYPVKR--SASLMFLHAIQEHFGYVSKEAI 63 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 E +A L++ I V E+ TFY F+ P G + ++VC T C L G KL + K+ Sbjct: 64 EWIAKKLELQPINVYELVTFYPMFRQEPAG-KHQIKVCRTLSCALGGSHKLHKYFCEKLG 122 Query: 122 QKPL----HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 DG S E VEC +C AP++M +D YE +T ++ +EI+ Sbjct: 123 LDSHAHGVQTTKDGKYSVEFVECLASCGTAPVMMCNEDFYEGVTNQKADEILGKCK 178 >gi|302342221|ref|YP_003806750.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM 2075] gi|301638834|gb|ADK84156.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM 2075] Length = 154 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 A+ ++E+I RYP +I LL Q G++S A++ V + + R +AT Sbjct: 3 AQAVQLDELIDRYPA--KPEYLIFLLQDIQAAYGYISPEAMDRVCDHAGVPKSRAYSVAT 60 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F L P G ++VC T C L+G ++L + K+ KP + D S E V C Sbjct: 61 FYQSFSLKPKGE-HKIRVCMGTACHLKGAQRLADAVERKLGIKPDETSPDLKFSLEAVHC 119 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170 GAC AP+V++ + + TP +L++++D Sbjct: 120 LGACAMAPVVVVDDEYHAGATPGKLDKLLD 149 >gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis SK121] gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis SK121] Length = 274 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRC-----QSAVIPLLMRAQEQEGWVS 57 VR A + P + VI+RY +SA++PLL Q ++G+++ Sbjct: 25 VRPGARSSYPPDVLA---RLDADAETVIARYREPDAAATTSRSALLPLLHLVQSEDGYIT 81 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 A I+ + L + V ++TFY+ ++ P G V VC T C + G + ++ Sbjct: 82 PAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALE 140 Query: 118 NKIHQ-----KPLHR--NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + + H SDG ++ E +EC AC AP++MI + +++ TPE ++D Sbjct: 141 EHLGSAGSRDEGGHSISTSDGKITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVD 200 Query: 171 AFSTGQGDTIRPG 183 A G+ T G Sbjct: 201 ALRAGERVTPSRG 213 >gi|332800414|ref|YP_004461913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter sp. Re1] gi|332698149|gb|AEE92606.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter sp. Re1] Length = 167 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + VNE++ +Y S +I + QE ++ + ++ + +A R+ +ATF Sbjct: 9 NFEKVNEILEKY--DYKPSNLISIFQEVQEIYRYLPEEILVYISTAMRIAPSRIFGVATF 66 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVEC 140 Y F L P G + ++VC T C +R +K++ + ++ K D + E V C Sbjct: 67 YESFSLEPKG-KNLIKVCDGTACHVRNSDKILSTTKEILNLKGDAKTTDDMLFTLETVSC 125 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 GAC AP+++I Y ++TPE++ ++I+ Sbjct: 126 LGACGLAPVIVINDKVYGNMTPEKVRQLINDIKE 159 >gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC 33394] gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC 33394] Length = 157 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S + ++ +++YP + +SA++ L AQ + G+++ IE VA + + I E Sbjct: 2 LSAQLLQQIDTELAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ +DG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIDYGETTADGKFTLVE 120 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172 EC GAC +AP++++ T + E +++ + Sbjct: 121 GECMGACGDAPVMLLNNHTMCSYMDAEAIDKKLAEL 156 >gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 639 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 13/193 (6%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 + +P + F+ +S ++E++ YP +SA++PLL Q E VS A IE +A IL Sbjct: 4 KLEPETPFFAAKS-ELLSEILGSYPEYGRRSAIMPLLWAVQRAERQVSEARIEEIAAILG 62 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + V + +FY+ + PVG R H+Q+C T C L G +++ + ++ ++ Sbjct: 63 LTATEVKGVMSFYSTYHERPVG-RYHLQLCSTLSCSLAGSDEMYDFLVTELGIVNGETDA 121 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR- 188 +G S ++VEC G+C AP++ + D YE +T R + +++A G+ +P PQ +R Sbjct: 122 EGLFSLQKVECLGSCGTAPVLQVNDDYYERVTRPRCQALLEALRGGE----QPEPQRERG 177 Query: 189 ------ISSAPAG 195 ++ P G Sbjct: 178 GDSVGPEAAEPFG 190 >gi|239616588|ref|YP_002939910.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505419|gb|ACR78906.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 164 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ +NE I + +I +L +AQE G++S + VA+ L + +V + Sbjct: 10 EKLYTQLNEYIDQVKEE--PGVLINVLHKAQELFGYLSEELQQHVADKLGVPLSQVHGVV 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + V++C T C +RG ++++E + ++ SDG S V Sbjct: 68 TFYNFFTTKPKG-KHQVKICLGTACYVRGADRILERFKEELGVDLDEPTSDGLFSLHGVR 126 Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQ 176 C GAC AP+V++G+ D Y +TP+ + II + + Sbjct: 127 CLGACSMAPVVLVGERDFYGKVTPDEVSAIIKKYRGEK 164 >gi|121998540|ref|YP_001003327.1| NADH-quinone oxidoreductase subunit E [Halorhodospira halophila SL1] gi|121589945|gb|ABM62525.1| NADH dehydrogenase subunit E [Halorhodospira halophila SL1] Length = 170 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 18 FSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 + + ++ +++YP SA+IP L Q+ G W+ R+ + A+ + M Sbjct: 11 LNADQRRRIDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRAS 70 Query: 75 VLEIATFYTQFQL-SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 E+ATFY+ F L PVG R V C C L G ++L+ K+ + DG + Sbjct: 71 AFEVATFYSMFHLDEPVG-RHKVNFCTNISCCLNGADELVAYAEEKLGIRLGETTPDGRI 129 Query: 134 SWEE-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + EC AC APM+++ Y LT ER++EI+D S Sbjct: 130 TLVREEECLAACTRAPMMVVDGHYYTHLTRERIDEILDGLS 170 >gi|212712279|ref|ZP_03320407.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM 30120] gi|212685025|gb|EEB44553.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM 30120] Length = 179 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 3/164 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E F +E + Y +R +A I L Q+ GWV AI +A++L Sbjct: 18 EPQVNHGFVLTEHERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADVL 75 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + L +++ +P Sbjct: 76 GIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTT 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +DG + C G C P +MI +DT+ + PE ++++++ + Sbjct: 135 ADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPENIQKLLEQY 178 >gi|150021054|ref|YP_001306408.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149793575|gb|ABR31023.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 160 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 23 AIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78 + ++IS R + +I L + Q+ + ++S A ++V+ L++ +V E+ Sbjct: 2 LSKIKDIISEAKNERLEEKDILIYTLHKIQDISENNFISEEAAKIVSEELNIPLSKVYEV 61 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY+ F G + ++VC + PC + ++I++ + ++ +DG + EE Sbjct: 62 LTFYSMFSTKKRG-KYLIRVCSSLPCHVANGREIIKILKEELKIDFNQTTADGMFTLEET 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C G C +P++MI Y DLTPE+++E+I+ G+ Sbjct: 121 GCLGLCGVSPVIMINNKYYGDLTPEKVKELINKIKRGE 158 >gi|187477545|ref|YP_785569.1| NADH dehydrogenase subunit E [Bordetella avium 197N] gi|115422131|emb|CAJ48655.1| NADH dehydrogenase I chain E [Bordetella avium 197N] Length = 164 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S ++ ++ ++++P + QSA++ L AQE++GW+S IE VA + +A I V Sbjct: 1 MLLSAQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLSAEIIEDVAKYIGVAPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVG + VC PC LR EK E + K+ +DG + Sbjct: 61 QEVATFYNMFDVKPVGV-HKIAVCTNLPCALRDGEKAGEYLKRKLGVGYRETTADGKFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174 E EC GAC +AP++++ ++ ++L+ ++D + Sbjct: 120 IEGECMGACGDAPVLIVNNKHMCVRMSEQKLDALVDGLKS 159 >gi|53804299|ref|YP_113851.1| formate dehydrogenase subunit gamma [Methylococcus capsulatus str. Bath] gi|53758060|gb|AAU92351.1| formate dehydrogenase, gamma subunit [Methylococcus capsulatus str. Bath] Length = 159 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E V EVI + A++P+L Q++ G++ A+ +A L+++ V + Sbjct: 4 TEWDRDAVTEVIEQ--KKSMPGALLPILHGIQDRIGFIPEDAVPQIAKALNLSRAEVHGV 61 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ + G + + +C C E L + ++ +DG S E V Sbjct: 62 ISFYHYFRTTAPG-KHTIHLCRAESCQAMNSESLETHVKARLGIDYHETTADGAFSLEPV 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P +MI + Y ++P+ + IID Sbjct: 121 YCLGNCACSPSMMIDHEVYGHVSPQSFDAIIDELKE 156 >gi|320354224|ref|YP_004195563.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] gi|320122726|gb|ADW18272.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032] Length = 152 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ Y R + +IPLL Q++ ++S A++ VA+ L+++ V +ATFY QF Sbjct: 8 LENILTAY--GRERDNLIPLLQEVQDRFRYLSPEAVQAVADHLELSANDVYGVATFYAQF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P G ++VC T C +RG ++++E P +S+G S E V C G+C Sbjct: 66 RFVPPGLHH-IKVCEGTACHVRGSDRILESISRATGIAPGQTSSNGQFSLERVACFGSCA 124 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 AP+V++ Y +T + ++I+ Sbjct: 125 LAPVVVVDDKVYGRMTAAKTNKLIED 150 >gi|239627949|ref|ZP_04670980.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47_FAA] gi|239518095|gb|EEQ57961.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47FAA] Length = 171 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + E+ + Y + ++I +L AQ G++ +V+A+ L++ V + Sbjct: 15 EALLKRIGELAAEY--RGREGSLIQVLHMAQGIYGYLPLEVQKVIADALEVPLAEVSGVV 72 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F P G ++VC T C +RG +K++E + + + +D ++E Sbjct: 73 TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTADRKFTFEVAR 131 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C GAC AP + I Y+ + P++LE+I++ + +G Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEGQ 170 >gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571680|ref|ZP_04849086.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838888|gb|EES66973.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 158 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + ++ +I +L AQ G++ ++A+ L + +V + TFYT Sbjct: 12 EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP+VMIG+ Y L P +++II+ Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157 >gi|302523881|ref|ZP_07276223.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4] gi|302432776|gb|EFL04592.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4] Length = 287 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P++ F ++ E+I+RYP SR SA++P+L Q +G+VS+ I A LD+ Sbjct: 46 PAADVFDADTHREAKEIIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCARHLDLTD 103 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH---------QK 123 V +ATFYT ++ P G V VC T C G + + + + + Sbjct: 104 AEVTAVATFYTMYKRRPCGE-HLVSVCTNTLCAALGGDDIYRKLQTHLGSAEKPLGHEET 162 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 G+++ E EC AC P++ + + +++ TPE+ ++DA G+ G Sbjct: 163 AGTPGEPGSITLEHAECLAACDLGPVLQVNYEYFDNQTPEQAVALVDALQAGKKPAPTRG 222 >gi|255525708|ref|ZP_05392640.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296184812|ref|ZP_06853223.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255510610|gb|EET86918.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296050594|gb|EFG90017.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 166 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +++V +Y + ++ +L AQ+ G++ ++ +A+ +V +ATF Sbjct: 10 DLSLMDKVFDKY--YKGNGNIVSMLQDAQDIYGYLPLDVLKAIADKTGNKRTKVYGVATF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+QF+L+P G + + C T C + E + +++ P +SDG S+E V C Sbjct: 68 YSQFRLNPRG-KYMILQCQGTACHVNNSEVIGNAICDELGINPGETSSDGMFSFEHVACL 126 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQGDTI 180 G C AP++MI + Y +LTP+++ +II D ++ + + I Sbjct: 127 GCCSLAPVIMINGEAYGNLTPDKVRKIIRDIYAREKEEAI 166 >gi|332526751|ref|ZP_08402853.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Rubrivivax benzoatilyticus JA2] gi|332111154|gb|EGJ11186.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Rubrivivax benzoatilyticus JA2] Length = 161 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +FSE + ++++P + QSAV+ L Q ++G VS+ A E +A L M I V Sbjct: 1 MNFSEATLARFAREVAKFPADQKQSAVMACLAIVQHEQGHVSQEAEEAIAAYLGMPAIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY + VG + + VC PC LR E ++ K+ +P DG + Sbjct: 61 HEVTTFYNMYNQRRVG-KYKLNVCTNLPCQLRHGEHALDHVCKKLGVEPYGTTEDGLFTV 119 Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 + EC GAC +AP++++ + ++ ERL+E+I+ Sbjct: 120 QPSECLGACADAPVMLVNDREMLSFMSDERLDELIETLRK 159 >gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4] gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4] Length = 274 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRC-----QSAVIPLLMRAQEQEGWVS 57 VR A + P + VI+RY +SA++PLL Q ++G+++ Sbjct: 25 VRPGARSSYPPDVLA---RLDADAETVIARYREPDSAATTSRSALLPLLHLVQSEDGYIT 81 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 A I+ + L + V ++TFY+ ++ P G V VC T C + G + ++ Sbjct: 82 PAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALE 140 Query: 118 NKIHQ-----KPLHR--NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + + H SDG ++ E +EC AC AP++MI + +++ TPE ++D Sbjct: 141 EHLGSTGSRDEGGHSISTSDGKITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVD 200 Query: 171 AFSTGQGDTIRPG 183 A G+ T G Sbjct: 201 ALRAGERVTPDRG 213 >gi|226227064|ref|YP_002761170.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] gi|226090255|dbj|BAH38700.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27] Length = 155 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + ++++++RYP Q+A++P L Q+ GWVS A +E VA L++ V + T Sbjct: 5 AARAELDKILARYP--HKQAALLPALWMLQDARGWVSEAGMEEVAAALEITPAYVKGVVT 62 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVE 139 FYT + PVGT +QVC TTPC + G E +++ + + DG + EVE Sbjct: 63 FYTMYHQHPVGT-YFIQVCTTTPCNVCGAEDVVKAFLEHTGCEDLGLTSPDGKYTVIEVE 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC A V I D E +TPE + I+ Sbjct: 122 CLGACGFATPVQINNDYVESVTPESVPRILSELK 155 >gi|225405664|ref|ZP_03760853.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme DSM 15981] gi|225042809|gb|EEG53055.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme DSM 15981] Length = 170 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + E+ + Y + ++I +L AQ G++ +V+A+ LD+ V + Sbjct: 17 AALLARIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPIEVQKVIADTLDIPLAEVAGVV 74 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+ F P G R ++VC T C +RG +K++E + + + D ++E Sbjct: 75 TFYSFFSTQPRG-RHTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTKDRLFTFEVAR 133 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP + I Y+ + P++LE+I+ + Sbjct: 134 CIGACGLAPAMSIDDQVYKQVNPDKLEQILKRY 166 >gi|171463530|ref|YP_001797643.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193068|gb|ACB44029.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 167 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ S+++ ++ I++YPP QSAV+ L+ AQ + GWVS IE VA IL+M I Sbjct: 3 TTLQLSDKTMADIHRNIAKYPPEHKQSAVMACLIAAQIEVGWVSPEVIETVAQILEMPSI 62 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V E+ATFY + P+G + + +C PC L E + + GT Sbjct: 63 AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGET-AAYLKETLGIDYNETTPCGTF 120 Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 + +E EC GAC ++P++++ ++ E+++ +++ Sbjct: 121 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLNELRA 162 >gi|302336897|ref|YP_003802103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634082|gb|ADK79509.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 169 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 4/150 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 ++ Y R +IP+L + QE+ ++ + +A L+++ R+ IATFY+ F L Sbjct: 19 RILDLY--DRDPGMIIPILQKVQEEYRYLPEEVLLFLATSLEISPARLYGIATFYSHFSL 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVN 146 P G + ++VC T C ++G LIE R+ + + SD + E V C GAC Sbjct: 77 EPKG-KHVIKVCDGTACHVKGSGALIETLRSMLALEKGIKTTSDMLFTLETVSCLGACGL 135 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+V+I + +TP+++ +I + Sbjct: 136 APVVVIDDTVHGQMTPDKVRALITKIREEE 165 >gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis] Length = 846 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E +N++IS+Y S +I +L +AQE G++ + +A+ + + V + Sbjct: 6 SMERLDDLNKIISQYKDS--PGQLIRILQKAQELYGYLPEDILGYIADKVGLPLSEVAGV 63 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY+ F P G + + VC T C ++G ++E + ++ +DG + Sbjct: 64 VTFYSLFTTKPKG-KHTISVCLGTACYVKGAPNVLEAIKKELAVDMDQTTADGLFTLTNT 122 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP V+I + + + + E+I + Sbjct: 123 RCVGACGLAPAVLIDGEVHGRVKASDVPELIRQYR 157 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC T C ++ R ++ + + DG ++ C G C P++++ Sbjct: 247 RHQILVCAGTGCTSSRSAEIQSTLRRELQAQ----SLDGEIAVVHTGCFGFCELGPILVV 302 Query: 153 GKD--TYEDLTPERLEEIIDA 171 + Y +TP + EI++ Sbjct: 303 HPERVFYCQVTPNDVPEIVER 323 >gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330] Length = 157 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SAV+ L AQ ++G+++ IE VA + + I E Sbjct: 2 LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ +DG + E Sbjct: 62 VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIGYGETTADGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ + + +E+ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDADAIEKKLAEL 156 >gi|319794664|ref|YP_004156304.1| NADH-quinone oxidoreductase, e subunit [Variovorax paradoxus EPS] gi|315597127|gb|ADU38193.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus EPS] Length = 180 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 4/181 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+ + P++ E +++YP + QSAV+ L Q+ EG++S Sbjct: 1 MTTSSTHHHDAAPAAP-LKAEILERFAREVAKYPEAGKQSAVMACLAIVQQDEGYISMQR 59 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +A+ L MA I V E+ TFY + PVG + + VC PC LR + K+ Sbjct: 60 EREIADYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKL 118 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST-GQGD 178 K DG + ++ EC GAC ++P++++ T ++ E+L+++I+ +G+ Sbjct: 119 GIKMGETTGDGLFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIEGLRASTKGE 178 Query: 179 T 179 T Sbjct: 179 T 179 >gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii ATCC 43553] gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii ATCC 43553] Length = 164 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V Sbjct: 1 MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVG + + VC PC LR ++ E + K+ +DG + Sbjct: 61 QEVATFYNMFDVKPVG-KNKIAVCTNLPCALRDGDRAGEYLKRKLGVDYRQTTADGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173 E EC GAC ++P++++ +T E+L+ ++ A Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTDEKLDALVAALK 158 >gi|284106849|ref|ZP_06386292.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830028|gb|EFC34304.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Poribacteria sp. WGA-A3] Length = 155 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 1/143 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++PLL AQ +EG+VS+AAI +A ILD+ +V E ATFYT L P+G + H+QVC + Sbjct: 1 MLPLLNLAQREEGYVSQAAIREIAGILDLTPPQVFETATFYTMLNLKPIG-KFHIQVCRS 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C L G + LIE R + D + VEC G+C PM+ I D YE LT Sbjct: 60 LMCALVGADPLIEWLRTHLGIGVGQTTDDKLFTLSAVECLGSCGTGPMMQINDDYYERLT 119 Query: 162 PERLEEIIDAFSTGQGDTIRPGP 184 E++ I+ ++ GP Sbjct: 120 EEKVGLIVRDLRETGDSAMKSGP 142 >gi|217077620|ref|YP_002335338.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] gi|217037475|gb|ACJ75997.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B] Length = 163 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 5/158 (3%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E ++ I + +I +L +AQE GW+ + + VA L++ V + T Sbjct: 10 ELYKELDAYIEELKG--KKGILINVLHKAQELFGWLPQEVQDHVAKKLNIPSSVVYGVVT 67 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F P G + +++C T C ++G ++++E N++ + DG S V C Sbjct: 68 FYNFFSTKPKG-KNQIKICLGTACYVKGADRVMERFLNELGVEESEVTKDGKFSVHGVRC 126 Query: 141 QGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177 GAC AP+V++G+ D Y +TP+ + II + G+G Sbjct: 127 LGACSMAPVVLVGEKDFYGKVTPDMVPGIIKKYK-GEG 163 >gi|326402926|ref|YP_004283007.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] gi|325049787|dbj|BAJ80125.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum AIU301] Length = 165 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 24 IWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + E I+ + ++A I L Q++ G VS + VA +L M + +ATF Sbjct: 15 AALRETIATFLRESETPRAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATF 74 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y PVG R + +C + C + G + R ++ +P DG + + C Sbjct: 75 YNLIFRRPVG-RHVILLCDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCL 133 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C AP +MIG D + +LTPER++ I++ + Sbjct: 134 GCCDRAPAMMIGDDLHGNLTPERIDAILEQYR 165 >gi|302879337|ref|YP_003847901.1| NADH-quinone oxidoreductase, E subunit [Gallionella capsiferriformans ES-2] gi|302582126|gb|ADL56137.1| NADH-quinone oxidoreductase, E subunit [Gallionella capsiferriformans ES-2] Length = 159 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +N + +YP + QSAV+ L Q+++GW++ + +A L M + V E Sbjct: 2 LSANIQEQINRELKKYPVDQKQSAVMSALRFVQDEKGWIATEDMADIAAFLGMPQMAVYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L P+G + + VC C L G + +K+ +DG E Sbjct: 62 VATFYHMYNLKPMG-KTTLTVCTNLSCTLCGSADTVAYLTSKLGIGFGEVTADGKYGMRE 120 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 EC GAC +AP++ I LTP ++++I+ Sbjct: 121 GECMGACKDAPLMTINNKKLCGRLTPAKIDQILAEL 156 >gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM 6192] gi|306532049|gb|ADN01583.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM 6192] Length = 164 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 5/162 (3%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ YPP R ++ +L Q+ ++ +E VA LD+ + I + Sbjct: 1 MAHIDRPWKAYPPRR--DNLLLILHDIQDHNPRNYLPDDEVEEVARYLDIPVSELDGIIS 58 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+ F P G R +++C + C L G L + + K DG + E V C Sbjct: 59 FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 G C P +M+ + + +T E+L+ +I+ + +G P Sbjct: 118 LGCCDKGPSLMVNDELHTRMTREKLDLLIEELARREGVAYEP 159 >gi|150391801|ref|YP_001321850.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149951663|gb|ABR50191.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 160 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +EE + VI + ++P+L AQ+ G++ + ++ +++ + Sbjct: 6 LTEEKFQRLQMVIE--EQKGKKGPLMPVLHEAQKIFGYIPLEVQKRISEEIEIPLSEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY+QF L P G + VC T C ++G + +I+ KP + DG S Sbjct: 64 VITFYSQFSLEPKGD-YVIGVCMGTACYVKGSQPIIDKISELTGTKPGGNSEDGRFSLVA 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP++ + +D Y L E + I++ + Sbjct: 123 TRCIGACGLAPVLTVNEDVYGRLKLEDIPGIVEKYQ 158 >gi|83590555|ref|YP_430564.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Moorella thermoacetica ATCC 39073] gi|83573469|gb|ABC20021.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073] Length = 157 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + ++I + SA+I +L ++QE G++ R +A+ L ++ +V + Sbjct: 7 EAKWEELEKIIDAH--RGQPSALIEVLHQSQELVGYLPRNVQVAIADGLGLSLSQVYSVV 64 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F P G + V VC T C ++G ++E ++ K +DG + +V Sbjct: 65 SFYNHFTTKPKG-KYQVSVCMGTACFVKGAPAILERLEQELGTKVGDTTADGRFTINQVR 123 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C P++ + + + LTP+ EI+ + Sbjct: 124 CLGCCALGPVMTVNQKAHGRLTPDTALEILKEYQ 157 >gi|150021057|ref|YP_001306411.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] gi|149793578|gb|ABR31026.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho melanesiensis BI429] Length = 163 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E ++ I + +I +L +AQE GW+ + VA L + V + T Sbjct: 9 ELYKELDAYIESLKG--KKGILINVLHKAQELFGWLPKEVQTHVAEKLKIPPSVVYGVIT 66 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F P G + +++C T C ++G ++++E N+++ K DG S V C Sbjct: 67 FYNFFSTKPKG-KHQIKICLGTACYVKGADRVMERFLNELNVKEGEVTKDGNFSVHGVRC 125 Query: 141 QGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP+V++G+ + + +TP+ + II F G+G Sbjct: 126 LGACSMAPVVLVGEKEFFGKVTPDMVPGIIKKFQ-GEGK 163 >gi|311104662|ref|YP_003977515.1| NADH-quinone oxidoreductase subunit E [Achromobacter xylosoxidans A8] gi|310759351|gb|ADP14800.1| NADH-quinone oxidoreductase, E subunit [Achromobacter xylosoxidans A8] Length = 164 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 2/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 SE++ ++ ++++P + QSA++ L AQE++GW++ IE VAN + + I V Sbjct: 1 MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATEIIEDVANYIGVPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY F + PVG + + VC PC LR E+ + + K+ DG + Sbjct: 61 QEVATFYNMFDVKPVG-KNKIAVCTNLPCALRDGERAGDYLKRKLGVDYRGTTPDGQFTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173 E EC GAC ++P++++ +T E+L+ ++ A Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALK 158 >gi|331699308|ref|YP_004335547.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] gi|326953997|gb|AEA27694.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190] Length = 273 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 12/178 (6%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S S+ E + E+I+RYP SR SA++P+L Q EG VS+ I A +LD+ Sbjct: 34 SPSYDEVTRQRAKEIIARYPQSR--SALLPMLHLVQSVEGHVSQEGIRFCAELLDLTTAE 91 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK---------PL 125 V +ATFYT ++ +P G V VC T C G + + + ++ + Sbjct: 92 VSAVATFYTMYKRTPCGE-HLVSVCTNTLCAALGGDDIYARLQARLGTEDRPLGHEETAG 150 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + G+++ E EC AC AP++ + + +++ T E EE++DA G+ G Sbjct: 151 EPGTPGSITLEHAECLAACDLAPVIQVNYEYFDNQTVESAEELVDALRRGEKPHPTRG 208 >gi|294788077|ref|ZP_06753321.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri ATCC 29453] gi|294484370|gb|EFG32053.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri ATCC 29453] Length = 157 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S +S ++ +++YP + +SA++ L AQ ++G+++ IE VA + + I E Sbjct: 2 LSAQSLKEIDIELAKYPADQRRSAIMGALRIAQVEKGYLAAETIEFVAQYVGIPAIAAYE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + L PVG + + VC PC LRG E + K+ DG + E Sbjct: 62 VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIGYGETTPDGKFTLVE 120 Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 EC GAC +AP++++ + +++ + Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDAAAIDKKLAEL 156 >gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Tolumonas auensis DSM 9187] Length = 570 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%) Query: 16 FSFSEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +E+ + ++ V+ +Y R +SA++P+L QE+ G+VS A++ VA++L + Sbjct: 1 MLLTEQEKLREFISTVVGKY--DRQRSALLPILRVIQEEYGYVSELAMQYVADLLGIHAA 58 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V +ATFY P G + +++ +++G + + + DG Sbjct: 59 KVYGVATFYHFINTEPKG-KFIIRLSRDISSIMKGANDIARQLETVLGIRFGETTPDGLF 117 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + + C G AP +MI + + +LTP + +II T + + RP Sbjct: 118 TLQWTSCIGMDDQAPAMMINSEVFSNLTPLLIPQIIRQC-TEKFYSHRP 165 >gi|325003720|ref|ZP_08124832.1| NADH dehydrogenase subunit E [Pseudonocardia sp. P1] Length = 276 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A E P S +F E + E I++YP R SA++PLL Q EG+VS+ I A Sbjct: 25 APPEPSPVSPTFDELTRARTKETIAQYPEPR--SALLPLLHLVQSVEGYVSQDGIRYCAE 82 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-- 124 L++ V +ATFYT ++ SP G V VC T C G + + + + + Sbjct: 83 ALELTTAEVSAVATFYTMYKRSPCGE-HLVSVCTNTLCAALGGDDIYARLQTHLGSEDRP 141 Query: 125 -------LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 + G+++ E EC AC AP++ + + +++ + E E++DA G+ Sbjct: 142 LGHEETVGEPGTTGSITLEHAECLAACDLAPVLQVDYEYFDNQSVESAVELVDALRRGER 201 Query: 178 DTIRPG 183 G Sbjct: 202 PQPTRG 207 >gi|39995451|ref|NP_951402.1| NADH dehydrogenase I subunit E [Geobacter sulfurreducens PCA] gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA] gi|298504450|gb|ADI83173.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400] Length = 173 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%) Query: 10 EFQPSSFSFSEE------SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 P+ + +EE N VI +Y ++P+L Q++ G+V R I++ Sbjct: 2 SNAPAEATTTEEVPVEEIDLGPANHVIDKYLT--LPGNLMPVLQGIQDEYGYVPRPTIDL 59 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA L++ ++ + TFY QF L P G R ++VC T C ++G ++++ K+ Sbjct: 60 VAERLNVYPSQIFGVLTFYAQFHLKPRG-RFIIRVCVGTACHVQGAPRIVDTFFEKLGIG 118 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D ++E+V C GAC AP+ M+ DT+ +T +++EEII ++ Sbjct: 119 HAETTPDLRYTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEEIIAEYN 168 >gi|13474500|ref|NP_106069.1| formate dehydrogenase subunit gamma [Mesorhizobium loti MAFF303099] gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrogenase gamma subunit [Mesorhizobium loti MAFF303099] Length = 159 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 7/165 (4%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 QP+S + +A + E+ + ++P+L Q++ G V +AA+ V+A+ L+ Sbjct: 2 TMQPASTEIASRTAAIIQEL------KGLEGPLLPILHEIQDEFGHVPQAALPVIADGLN 55 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 ++ V + TFY F+ P G R +++C C G + + + + Sbjct: 56 LSRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKIKQLLGIGFHETTR 114 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 DG+++ E V C G C +P M+ + L ++++EI+ + Sbjct: 115 DGSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEILAEVRS 159 >gi|328950035|ref|YP_004367370.1| NADH-quinone oxidoreductase, E subunit [Marinithermus hydrothermalis DSM 14884] gi|328450359|gb|AEB11260.1| NADH-quinone oxidoreductase, E subunit [Marinithermus hydrothermalis DSM 14884] Length = 200 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 2/162 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV +YPP +SA++PLL R Q +EG+VS A I +A ++ V Sbjct: 1 MGFFDDKQDWLEEVFRQYPPEGRRSAIMPLLRRVQTEEGYVSEARIREIAELVGTTPTEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ + P G + H+QVC T C L G ++L + + P DG S Sbjct: 61 KGVMSFYSYYHELPTG-KYHLQVCATLSCALAGADELWDYLVETLGILPGEVTPDGRFSI 119 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP+V + + Y E +T RL+ +++ + Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKADR 161 >gi|297565710|ref|YP_003684682.1| NADH-quinone oxidoreductase subunit E [Meiothermus silvanus DSM 9946] gi|296850159|gb|ADH63174.1| NADH-quinone oxidoreductase, E subunit [Meiothermus silvanus DSM 9946] Length = 183 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+ EV S+YP R +A++PLL R Q+ EGW+S E +A+I+ V Sbjct: 1 MGFFDDKQEWLAEVFSQYPERR--AALMPLLRRVQQDEGWISPERQEEIAHIVGTTATEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FYT FQ P G + H+QVC T C + G ++L + + P +DG S Sbjct: 59 AGVMSFYTYFQSLPTG-KHHIQVCATLSCAIGGADELWDELVQTLGILPGEVTADGLFSI 117 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP+V I + Y E +T RL+ ++ G+ Sbjct: 118 QKVECLGSCHTAPVVQINDEPYVECVTKARLQALLQGLREGK 159 >gi|323703025|ref|ZP_08114681.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532038|gb|EGB21921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 176 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 3/171 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P S S E+ +++++++Y + A I +L + Q G++ ++ +E ++ + Sbjct: 4 PDSLKLSAENFDAIDQIVNKYNSDK--GAAIMILQQVQATYGYIGQSMLERISQLTGTPT 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + I TFY+QF+L P+G +QVC T C L G E++ E ++ KP H + DG Sbjct: 62 SELFSIVTFYSQFRLEPLGENF-IQVCHGTACHLAGAERISEAVQHVTKAKPGHTSPDGK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + E V C G C + P++ + +T+ +TP+++++++ +G G Sbjct: 121 FTLEHVACLGCCSHGPIMTLNNETFARMTPDKVKKMLHQKVADKGFVNSEG 171 >gi|225175929|ref|ZP_03729921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168517|gb|EEG77319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 166 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + ++ +Y +I +L +AQ+ G++ + + +A LD++ ++ + TFY+Q Sbjct: 21 KMEALMQKY--QGKPEMLITVLQQAQDIYGFLPESVLLRIAEALDLSMAKIYGVVTFYSQ 78 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G R ++VC T C +RG ++++ + ++ + D + E V C GAC Sbjct: 79 FHLKPRG-RNVIRVCQGTACHVRGVGRIMDKIKEELGIAEGETSEDLRFTLESVACIGAC 137 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP++MI DT+ LT +R++ I+ Sbjct: 138 GLAPVIMINNDTHGRLTADRVKLIL 162 >gi|315186944|gb|EFU20702.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Spirochaeta thermophila DSM 6578] Length = 160 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q + E ++++ + +I +L + QE G++ R +A +LD+ Sbjct: 3 QTVEVTLHPELMSFIDQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVLDVP 56 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY F+L G + + VC T C L+G E +++ + + P DG Sbjct: 57 LAKIYGVITFYHFFKLRKPG-KHRISVCLGTACFLKGGEDILKELEDLLGVGPNTATEDG 115 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 S+E V C G C AP++M+ + Y +T + L I+ + Sbjct: 116 LFSFEAVRCLGCCGLAPVLMVDGEVYGKVTKDDLPGILAKYRE 158 >gi|239616591|ref|YP_002939913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] gi|239505422|gb|ACR78909.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia TBF 19.5.1] Length = 167 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 42 VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +I L Q+ G ++ A E + +I+ + ++ E+ TFYT F G + ++VC Sbjct: 28 LINTLHAIQDYYGNYIPLEATEALRDIMGIPLSKIYEVLTFYTMFSTEKRG-KYIIRVCK 86 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 + PC + G EK++E ++ + + DG + EE C G C +P++MI + Y +L Sbjct: 87 SLPCHVTGGEKVVEALKDTLGIDFGNTTEDGLFTLEESSCLGLCGVSPVMMINDEAYGNL 146 Query: 161 TPERLEEIIDAFSTGQGDTIR 181 TP+++E+II+ + R Sbjct: 147 TPDKVEKIINEIREKERSDAR 167 >gi|319779886|ref|YP_004139362.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165774|gb|ADV09312.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 159 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 QP+S + +A + E+ + ++P+L QE+ G V + A+ V+A L+ Sbjct: 2 TMQPASTEITSRTAAIIQEM------KGLEGPLLPILHGIQEEFGHVPKDALPVIAEALN 55 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 ++ V + +FY ++ P G R +++C C G + + + + Sbjct: 56 ISRAEVHGVVSFYHDYRSHPAG-RHVLKLCQAESCQSMGSDAIAAKLKQLLGIGFHETTR 114 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 DG+++ E V C G C +P M+ + L E+L+EI+ Sbjct: 115 DGSVTLEPVYCLGLCACSPAAMLDGEVIGRLDDEKLDEIVAE 156 >gi|255526811|ref|ZP_05393710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296186423|ref|ZP_06854826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255509490|gb|EET85831.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296048870|gb|EFG88301.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 159 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + ++ + + I + ++I +L +AQ G++S+ + VA LD+ +V Sbjct: 5 NLEKQYFNELEQFIDNLEE--KKGSLISVLHKAQNLFGYLSKDVQKFVAKKLDIPVSKVN 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F P G + + +C T C ++G ++E K+ + SDG + + Sbjct: 63 GVVTFYSYFTEEPTG-KYVINICMGTACFVKGSGDVLEEFERKLDIEVGETTSDGKFTIQ 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C GAC AP+V + Y T + +++I+D + Sbjct: 122 VLRCVGACGLAPVVTVNDKVYGHFTKQMVDKILDEYKE 159 >gi|255527513|ref|ZP_05394381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|255508783|gb|EET85155.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] Length = 160 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +VI +YP + Q + +L Q + ++ R ++E +A L+ R+ +ATFY Sbjct: 14 KDVIQKYP--KEQRYTLAILQDIQRKYRYIPRESLEALAEYLETPVSRLYGMATFYKALS 71 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L+P G + VC T C + G +++ + +P D S V C G C Sbjct: 72 LTPKGE-NIITVCDGTACHVSGSMVVMDELEKILGIRPGGTTEDRKFSINTVNCIGCCAI 130 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP++MI + Y +LTP+ ++EI+D + + Sbjct: 131 APVMMINEKFYGNLTPKMIKEILDEYRGEK 160 >gi|148260121|ref|YP_001234248.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5] gi|146401802|gb|ABQ30329.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5] Length = 165 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++A I L Q++ G VS + VA +L M + +ATFY PVG R + + Sbjct: 32 RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + G + R ++ +P DG + + C G C AP +MIG D + Sbjct: 91 CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150 Query: 159 DLTPERLEEIIDAFS 173 +LTPER++ I++ + Sbjct: 151 NLTPERIDAILEQYR 165 >gi|253579945|ref|ZP_04857213.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA] gi|251848944|gb|EES76906.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA] Length = 160 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY Sbjct: 7 YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPEELLTYVAEQIGVTEAKAFSVATFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141 F G + ++VC T C +R ++E K+ K D + E V C Sbjct: 65 ENFSFDAKG-KYVIKVCDGTACHVRKSIPVLEELYKKLGLSKTKKTTDDMMFTVETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP +M+ ++ Y +TPE+ +E+ID G+ Sbjct: 124 GACGLAPTMMVNEEVYPRMTPEKADELIDKLRGGE 158 >gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM 6192] gi|306532784|gb|ADN02318.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM 6192] Length = 160 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q + + E ++ + + +I +L + QE G++ R +A ++D+ Sbjct: 3 QTAEVTLHPELMAFIEQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVIDVP 56 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 ++ + TFY F+L G + + VC T C L+G E +++ + + P DG Sbjct: 57 LAKIYGVITFYHFFKLRKPG-KHRISVCMGTACFLKGGEDILKELEDLLGVGPNTATEDG 115 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 S+E V C G C AP+VM+ + Y +T + L I+ + Sbjct: 116 LFSFEAVRCLGCCGLAPVVMVDGEVYGKVTKDDLPGILAKYRE 158 >gi|291296252|ref|YP_003507650.1| NADH-quinone oxidoreductase E subunit [Meiothermus ruber DSM 1279] gi|290471211|gb|ADD28630.1| NADH-quinone oxidoreductase, E subunit [Meiothermus ruber DSM 1279] Length = 188 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F ++ W+NEV ++YP R +A++P+L R Q+ EGW+S E +A IL + V Sbjct: 6 MGFFDDKQDWLNEVFAQYPDRR--AALMPMLRRVQQDEGWISPERQEEIARILGITATEV 63 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY+ +Q P G + H+QVC T C + G ++L + + DG S Sbjct: 64 AGVMSFYSYYQALPTG-KYHLQVCATLSCAIGGADELWDELVETLGILRGEVTPDGLFSI 122 Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 ++VEC G+C AP++ + + Y E +T RL ++ G+ Sbjct: 123 QKVECLGSCHTAPVIQVNDEPYVECVTKARLHALLQGLREGK 164 >gi|300853891|ref|YP_003778875.1| NADH dehydrogenase I subunit E [Clostridium ljungdahlii DSM 13528] gi|300434006|gb|ADK13773.1| NADH dehydrogenase I, E subunit [Clostridium ljungdahlii DSM 13528] Length = 161 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +VI +YP + Q + +L Q + ++ R A+E +A LD R+ +ATFY Sbjct: 13 QDVIEKYP--KEQRFTLAILQDIQRKYKYIPREALENLAKYLDTPVSRLYGMATFYKALS 70 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L+P G + VC T C + G +++ I KP D S V C G C Sbjct: 71 LTPKGE-NIITVCDGTACHVAGSMVVMDELEKAIGIKPGETTEDLKFSINTVNCIGCCAI 129 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++MI Y +LTP+ +EEI+ + + Sbjct: 130 APVMMINDKYYGNLTPKLVEEILSEYRS 157 >gi|256380661|ref|YP_003104321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum DSM 43827] gi|255924964|gb|ACU40475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum DSM 43827] Length = 254 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 13/190 (6%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + F + + +I+RYP R SA++P+L Q EG VS A I A++LD++ Sbjct: 15 PGAVVFDQGTTDRARAIIARYPVPR--SALLPMLHLVQSVEGHVSTAGIAFCADLLDLSA 72 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------- 124 V +ATFYT ++ P G V VC T C G + + R+ + Sbjct: 73 AEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDDIYAKLRDHLGADGKPLGHEET 131 Query: 125 -LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + G+++ E EC AC AP+V + + +++ TP+ E++ + G+ G Sbjct: 132 SGEPGAPGSVTLEHAECLAACDLAPVVQVNYEYFDNQTPDGALEMVKSLQAGEKPHPTRG 191 Query: 184 -PQIDRISSA 192 P D + Sbjct: 192 APLTDFRQAE 201 >gi|325660924|ref|ZP_08149551.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085361|ref|ZP_08334447.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472431|gb|EGC75642.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408144|gb|EGG87634.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 163 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 F ++E + EVI + Q A++ +L +AQE G+V ++++ +D Sbjct: 3 NKSTVPFQGTKEQETVLREVIEKRKSE--QGALMAVLQQAQEIYGYVPTEVQTIISDEMD 60 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + ++ E+ FY QF LSP G + V +C T C ++G + + + Sbjct: 61 IPLHKIEEVVDFYPQFTLSPKG-KYQVSICLGTACFVKGAGDVYNKLTEVLGIGGGECTA 119 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG S + C GAC AP++M+ D Y + E +EEI+ + Sbjct: 120 DGKFSLDASRCIGACGMAPILMVNDDVYNHVKAEDVEEILAKY 162 >gi|78224541|ref|YP_386288.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter metallireducens GS-15] gi|78195796|gb|ABB33563.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] Length = 173 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 N VI +Y ++P+L Q++ G+V + I++VA L++ ++ + TFY QF Sbjct: 24 ANHVIDKYLT--LPGNLMPVLQGIQDEYGYVPKPTIDLVAERLNVYPSQIFGVLTFYAQF 81 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G R ++VC T C ++G +++E +K+ + D ++E+V C GAC Sbjct: 82 HLKPRG-RYIIRVCVGTACHVQGAPRIVETFFDKLGISHAETSPDLRYTFEKVACLGACG 140 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+ M+ DT+ +T +++EEII ++ Sbjct: 141 MAPLAMVNDDTFGKMTVQKVEEIIAEYN 168 >gi|254468730|ref|ZP_05082136.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13] gi|207087540|gb|EDZ64823.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13] Length = 156 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +++ + +YP + QSAVI L Q GW+S+ I VA LDM I VLE+ATFY Sbjct: 6 KKLIDKELKKYPSDKKQSAVIAALAIMQNDRGWLSKEDISEVALYLDMPEIAVLEVATFY 65 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L VG R + +C CMLR + ++ + K+ DG +E EC G Sbjct: 66 NMFDLKSVG-RYKLSICTNISCMLRDADHIVNHLKEKLQIDFNEVTRDGKFCLKESECMG 124 Query: 143 ACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 AC AP++ + +E+L +++++++ Sbjct: 125 ACGGAPLLTVNNQKMHENLNIDKVDQLLKELK 156 >gi|226327880|ref|ZP_03803398.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198] gi|225203584|gb|EEG85938.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198] Length = 181 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F +EE + + Y R +A I L Q+ GWV AI +A++L + Sbjct: 25 ATFVLTEEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C + G + + ++ P DG Sbjct: 83 DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNIIPGQTTPDGRF 141 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +M+ DT+ + PE +E +++ + Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180 >gi|302392633|ref|YP_003828453.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302204710|gb|ADL13388.1| NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 164 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E ++E+I + + +I +L +AQ+ G +SR +A LD+ + +V + Sbjct: 14 DEKFEKLDEIIEQ--NRGQEGILINVLHQAQQIFGHLSRKIQVHIAEGLDIPFSKVYAVI 71 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY+ F G + ++VC T C ++G E ++E + ++ +P DG + E Sbjct: 72 SFYSLFSTEMRG-KYTIEVCTGTACYVKGAEDILEQFKTELEIEPGETTEDGLFTLETTR 130 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++ +G DT+ L +++ +++D + Sbjct: 131 CIGACGMAPVIKVGDDTHGRLKEDQVSDLLDKY 163 >gi|282891846|ref|ZP_06300326.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498279|gb|EFB40618.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 171 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +EE+ + E+ RYP R SA+IP L AQ + G++ R VA + D+ V Sbjct: 2 LTEETRKSIIELQKRYPNKR--SALIPALHLAQAEIGYLPRDIQNEVAELFDIDSNEVNA 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY F PVG + + VC CMLRG + +++ ++++ +P +DG + Sbjct: 60 VVTFYDMFFDQPVG-KHLIHVCKNLSCMLRGADGVLKKICHRLNVEPHETTADGEFTVIP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 EC AC APMV++ ++ + +E I++ G Sbjct: 119 SECLAACDRAPMVLVDDKVVGPISEQDVEHILEEAKKSPGHP 160 >gi|15616777|ref|NP_239989.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681532|ref|YP_002467917.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682088|ref|YP_002468472.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471213|ref|ZP_05635212.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11133961|sp|P57255|NUOE_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain E [imported] - Buchnera sp. (strain APS) gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621821|gb|ACL29977.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624375|gb|ACL30530.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085899|gb|ADP65981.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086472|gb|ADP66553.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087053|gb|ADP67133.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 162 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F + E + Y R S I L Q++ GWVS AI +A IL + Sbjct: 7 KFKLTNEEINAIENQKKYYEDFRAIS--IEALKIVQKKRGWVSDQAIYAIAEILHINPSD 64 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +ATFY+Q PVG R ++ C + C L G +++ N + K D + Sbjct: 65 VEGVATFYSQIFRKPVG-RNIIRYCDSVVCFLTGYKRIQIALENYLKIKIGETTKDDRFT 123 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C G C P +MI +DTY LTPE + +++++ Sbjct: 124 LLPVCCLGNCDKGPTIMINEDTYSVLTPESIPSLLESYK 162 >gi|42524474|ref|NP_969854.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100] gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100] Length = 159 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74 F S+ V ++RY +SA+IP L AQ++ G+++ I ++ ++D+ R Sbjct: 4 FKLSDSGLAAVKSELARYEA--KESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 + E+ FYT F PVG + HVQVC C L G ++ + +++ K +DG + Sbjct: 62 INEVFKFYTMFNQKPVG-KYHVQVCTNISCALEGGREMAKHICHELGVKFDQVTADGRFT 120 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +VEC G+C APM+ + +E LTPE ++ Sbjct: 121 VSKVECLGSCGTAPMMQVNDSYHEKLTPETAMNLLRGMK 159 >gi|297625186|ref|YP_003706620.1| NADH-quinone oxidoreductase subunit E [Truepera radiovictrix DSM 17093] gi|297166366|gb|ADI16077.1| NADH-quinone oxidoreductase, E subunit [Truepera radiovictrix DSM 17093] Length = 191 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 5/171 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F + ++E++ RYP +SAV+PLL Q E +S A IE +A IL + V Sbjct: 10 FFADKQDVLSEILGRYPEYGRRSAVMPLLWEVQRAERHISEARIEEIAEILGLHATEVKG 69 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY+ + PVG + H+Q+C T C L G +++ + + + +G S ++ Sbjct: 70 VMSFYSTYHELPVG-KYHLQICATLSCSLAGADEMYDFISEETGLVSGETDREGLFSLQK 128 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 VEC G+C AP++ + YE +TP R + ++ A G+ P P +R Sbjct: 129 VECLGSCGTAPVLQVNDTFYERVTPSRCKALLAALRRGE----EPAPWRER 175 >gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter carbinolicus DSM 2380] gi|77544605|gb|ABA88167.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 159 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F++E V+ +I RY S +IPLL + QE G++ + E ++ ++ R+ Sbjct: 6 EFTKEQIDEVDGLIDRYGA--HPSGLIPLLEKVQELLGYLPLSIQEYISEKTHISPNRIY 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F + R VQ+C T C ++G + ++E N DG ++E Sbjct: 64 GVVTFYSFFTMEAR-ARHRVQLCLGTACYVKGADAMVEKIENDYQINFGESTEDGRFTFE 122 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP+V+I + + +T + L+ I++ F+ Sbjct: 123 KARCVGACGLAPVVIIDGEVFGKVTVDSLDGILEQFA 159 >gi|224368768|ref|YP_002602929.1| NuoE [Desulfobacterium autotrophicum HRM2] gi|223691484|gb|ACN14767.1| NuoE [Desulfobacterium autotrophicum HRM2] Length = 164 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 3/165 (1%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67 +++ P SE+ ++++I+ ++I +L +QE G++ I +++ Sbjct: 2 KQKTHPLHPDISEDMWGKIDKIIAS--GKGIPGSLISVLRESQEVVGYLPSELINHISHG 59 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + +V +ATFY+ F L+P G R ++VC T C ++G ++ I K Sbjct: 60 LVLPTSQVFGVATFYSFFSLTPKG-RHTIRVCTGTACYVKGIKEAIGRIHGTYGIKEGET 118 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D S E V C GAC AP++++ KD Y +T +++ I++ + Sbjct: 119 TEDRKFSLEGVRCLGACGLAPVMIVDKDIYGQVTSDKVINILEKY 163 >gi|330830048|ref|YP_004393000.1| NADH dehydrogenase I subunit E [Aeromonas veronii B565] gi|328805184|gb|AEB50383.1| NADH dehydrogenase I, E subunit [Aeromonas veronii B565] Length = 180 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 F S+ + Y R +A I L Q+ GWV AI +A L + Sbjct: 24 DDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPAS 81 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++VC + C + G E+L+ + ++ P DG Sbjct: 82 DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEELMAGLKEVMNLGPGQTTPDGRF 140 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C P +MI DTY L P L + ++A+ Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPVTLLKTLEAY 179 >gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehydrogenase I chain E [Candidatus Kuenenia stuttgartiensis] Length = 154 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E + E + P ++A I L Q+ GWVS ++ +A L++ V Sbjct: 2 LSVEEQKDLEEELKIVP--YKKAATIEALKIVQKHRGWVSDDGVKDIAEFLEITPDEVDS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY VG + + VC + C + G ++++ K+ K SDG + Sbjct: 60 VATFYNLIFRRKVG-KHVILVCDSVSCWILGYNQILDYLNKKLGIKFGETTSDGKFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C +AP +MI D Y DLT + L+ I++ +S Sbjct: 119 ISCLGTCDHAPALMIDNDLYRDLTTDLLDPILEKYS 154 >gi|291285961|ref|YP_003502777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883121|gb|ADD66821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio acetiphilus DSM 12809] Length = 168 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+ +Y A IP+L + Q+ G++ +E +A+ L+M+ ++ + TFY QF Sbjct: 18 DEICEQYKD--WAGATIPVLQKTQDAYGFLFPELVERIADNLNMSPHQIYGVITFYAQFY 75 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G + ++VC T C ++G ++ E+ + + + D + EEV C GAC Sbjct: 76 TKPRG-KYIIRVCRGTACHVQGSGRISEIVKEEFKISNGETSGDLKFTLEEVSCIGACGM 134 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 AP++MI TY +L PE +I ++ D Sbjct: 135 APVIMINNKTYGNLKPEDARKIFREYANLPED 166 >gi|51244536|ref|YP_064420.1| NADH dehydrogenase subunit E [Desulfotalea psychrophila LSv54] gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxidoreductase, 24 kDa subunit [Desulfotalea psychrophila LSv54] Length = 154 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L Q + G++ A+ VA+ L + RV +ATFY QF+ +PVG + V VC Sbjct: 19 LIPILQNVQHKFGYLPEDAMREVADFLRIPESRVYGVATFYEQFRFTPVG-KTKVTVCRG 77 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C +RG +K+I ++ K DG + E C G C AP VMI ++ +LT Sbjct: 78 TACHVRGAQKIIASVEKRLGIKEGETTEDGEYTLETAACIGCCALAPCVMINEEVEANLT 137 Query: 162 PERLEEIIDA 171 P+++ D Sbjct: 138 PKKMNAYFDQ 147 >gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium MedDCM-OCT-S08-C1340] Length = 165 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVL 76 FSE ++ + S++P + +SA+I L+ Q + G++S I +AN LD+ I V Sbjct: 7 FSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDIQKIDVY 66 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ATFY+ F L PVG + + VC CMLR + ++ ++ K D + Sbjct: 67 EVATFYSMFNLKPVG-KNTISVCTNVSCMLRNSDGIVNHIEKRLKIKIGESTKDNKFYLK 125 Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + +EC AC APM+ + YE+LT E++++I+D + Sbjct: 126 DEMECLAACNGAPMMQVNHINYENLTFEKVDKILDEIA 163 >gi|158425076|ref|YP_001526368.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571] gi|158331965|dbj|BAF89450.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571] Length = 159 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 SA E+I+ + A +P+L QE G+V + ++A L+++ V + TF Sbjct: 10 SASRAAEIIAEH--RHMDGATMPILHAVQETFGFVPDPVVPMIAESLNLSRAEVYGVVTF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R +++C C G EKL ++ + + DG ++ E + C Sbjct: 68 YHDFRREPPG-RHVIKLCAAEACQSMGSEKLARYAEERLGIEMGETSPDGKVTLEPIYCL 126 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C AP MI L ++E++ Sbjct: 127 GLCACAPSAMIDGRLVGRLDEATIDELVAE 156 >gi|258516936|ref|YP_003193158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780641|gb|ACV64535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 222 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 8/172 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +++++ Y R + +I +L AQ+ G++ +A +D+ V + TFY Sbjct: 43 YAELDKLLELY--GRERGELIRVLYGAQKIFGYLPPEVQAYIAAKMDIPISEVNGVVTFY 100 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F P G R V+VC T C ++G +++ + ++ DG + C G Sbjct: 101 TLFVTEPRG-RHTVRVCTGTACYVKGAADIMDKFKQELKLDGRETGEDGLFTLTSTRCIG 159 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 AC AP++ + ++ Y +LT + + I++ + + D + G ++ A Sbjct: 160 ACGMAPVLTVDEEVYGNLTAKDVITILEKYRS---DPVAAG--SGTAAAEKA 206 >gi|268323354|emb|CBH36942.1| putative NADH-quinone oxidoreductase chain E [uncultured archaeon] Length = 153 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V+E+I RY + +I LL+ Q + W+S+ AI ++ + + ++ IA+F Sbjct: 5 DLKRVDEIIERYKGE--EGVLIQLLLDVQSEFNWISKEAITQISERMQIPKSQIYRIASF 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y L PVG R +QVC T C +RG K+++ + K SD S + V C Sbjct: 63 YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P++++ + +TP +E I++ + Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152 >gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus aciditrophicus SB] gi|85721023|gb|ABC75966.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus aciditrophicus SB] Length = 173 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + E+IS+Y + SA + +L QE+ ++ + A+ +V++ L + R+ EIA Sbjct: 17 EVDRGKIREIISKYDGEK--SAAVAVLQDLQEEFRYLPKEALTIVSDELQVPLSRIYEIA 74 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L P G + ++VC T C ++G L+ ++ D + EEV Sbjct: 75 TFYNVFSLKPRG-KYLIEVCAGTACHVQGGFNLMNRLERNLNISCGETTEDAMFTLEEVR 133 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C G C AP+V I + + LT + + I+ + Sbjct: 134 CLGCCSLAPVVRIDGNIHPYLTQDEIPGILKNYRKA 169 >gi|119510368|ref|ZP_01629503.1| ATP synthase subunit E [Nodularia spumigena CCY9414] gi|119465005|gb|EAW45907.1| ATP synthase subunit E [Nodularia spumigena CCY9414] Length = 179 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 1 MSVRRLAEEEFQ---PSSFSFSEES-AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56 M + + Q PS+ E+ ++ I RY Q A+I +L +AQE G++ Sbjct: 1 MDLASAVKSNNQAKAPSATDIHEDKRLKMLSATIKRY--QYQQDALIEILHKAQELFGYL 58 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 + + +A+ L + V +ATFY F L+P+G R VC T C ++G E+++ Sbjct: 59 KKDVLVYIAHQLKLPPSTVYGVATFYHFFSLAPIG-RHSCMVCTGTACYVKGAEEILNSL 117 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 N IH +P ++DG +S C G C AP+V+ D TPE + + I + Sbjct: 118 ENSIHIRPGETSADGQISLLTARCLGPCGIAPVVVFDDTVLGDQTPESVGDRIKGW 173 >gi|310658218|ref|YP_003935939.1| fe hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824996|emb|CBH21034.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 159 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + ++E + + I+ ++A+I +L +AQ G++ + + L + +V Sbjct: 5 TLNKELYDQLADYIAN--IENKETALIEVLHKAQNLFGFIPKEVQLFIGEKLGVPASKVF 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY+ F P G + + VC T C +R + L+ + KP + S E Sbjct: 63 GVVSFYSYFTTEPKG-KYVINVCMGTACFVRKADSLLRELEKVLCIKPGETTENKMYSIE 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC AP++M+ + Y +T + + +I+ ++ Sbjct: 122 ALRCVGACGLAPVIMVNDEVYGKVTVDDIPKILAKYA 158 >gi|323702076|ref|ZP_08113744.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532958|gb|EGB22829.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 159 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E ++ + ++Y + + +I +L QE G++ + + A L + V +AT Sbjct: 10 EQDKKLDALFAQYKGN--PNGLIVVLAAIQEVHGYLPKDYLIKTAEELGVPLSDVYGVAT 67 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F L P G R V +C T C ++G ++ + ++ K + D S + V C Sbjct: 68 FYAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQAMLEKEMGIKAGNTTEDRRFSLDLVRC 126 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++ + + Y +T E++ EI+ + Sbjct: 127 LGACGIAPVMTVNGEVYPRMTAEKVSEILAKY 158 >gi|300245745|gb|ADJ93930.1| putative benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 178 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E +N VI + A+IP+L +AQ+ G++ V+ L + V + Sbjct: 19 DEKLAKLNAVIEEFKD--QPGALIPVLHKAQQIYGYLPEEVQYHVSQGLRVPLADVYGVV 76 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F ++P G ++ VC T C ++G +L+ +++ K + D S E Sbjct: 77 TFYALFTMTPRGE-NNIAVCLGTACYVKGAGELVSKISDELGIKIGEISQDRKFSMEATR 135 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C GAC AP++ + ++ + L +L E++ + + RP Sbjct: 136 CIGACGLAPVLTVNEEVHGRLDAGQLGELLQKYKEQYAVSSRP 178 >gi|91203918|emb|CAJ71571.1| similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit (NuoE) [Candidatus Kuenenia stuttgartiensis] Length = 164 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 19 SEESAI----WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S E+ +V+ +Y R ++IP+L Q G++ ++ V+ L+++ Sbjct: 8 SAENEALYLSKTEDVLEKYKHGR--GSLIPILQTIQTAYGYLPEKVVDFVSERLNISVNE 65 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 ++ +ATFY QF + P G R ++ C T C ++G +++IE K+ D + Sbjct: 66 IIGVATFYAQFHMRPRG-RHIIKACSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFT 124 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 EEV C GAC AP++M+ +D Y L + IID Sbjct: 125 LEEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIIDEIK 163 >gi|146278887|ref|YP_001169046.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC 17025] gi|145557128|gb|ABP71741.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V+E++ + + ++P+L QE G V ++ +A L+++ V + Sbjct: 6 AEVCARVDEILDEHEG--LEGPLLPILHAVQEAFGHVPLESLPRIAERLNLSRAEVHGVM 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G ++L E + ++ +DG ++ E V Sbjct: 64 SFYHDFRTRPHG-RHVLKLCRAEACQAMGADRLAEATQARLGIGWHQTTADGGVTLEPVF 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP ++ + RL+ I++ Sbjct: 123 CLGLCACAPAALVDGRVVGRVDDARLDRILEEVRA 157 >gi|52549206|gb|AAU83055.1| NADH-ubiquinone oxidoreductase 24 kD subunit [uncultured archaeon GZfos26D6] Length = 153 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V+E+I Y + +I LL+ Q + W+S+ AI ++ + + ++ IA+F Sbjct: 5 DLKRVDEIIEHYKGE--EGVLIQLLLDIQSEFNWISKEAIAQISERMQIPKSQIYRIASF 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y L PVG R +QVC T C +RG K+++ + K SD S + V C Sbjct: 63 YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P++++ + +TP +E I++ + Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152 >gi|256422832|ref|YP_003123485.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] gi|256037740|gb|ACU61284.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM 2588] Length = 154 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S ++ I P ++ VI L Q+ GW+S ++E +A+ L ++ V Sbjct: 2 LSTTEKEAIDHEIGLVP--HKRATVIEALKIVQQHRGWISDDSVEEIAHYLGISPAEVDS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG R + +C + C + G + L + K+ D + Sbjct: 60 VATFYNLIFRKPVG-RHVILLCDSISCYVMGYKSLYAALQRKLQISFGQTCPDNRFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +AP +MI KD Y D+T E+L++I+ ++ Sbjct: 119 NACLGCCDHAPAMMIDKDLYRDITIEQLDDILKKYA 154 >gi|256827980|ref|YP_003156708.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium baculatum DSM 4028] gi|256577156|gb|ACU88292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium baculatum DSM 4028] Length = 175 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + +I+ + + Q ++I +L Q+ G+ I +A+ ++ V Sbjct: 23 LTPAQFAQADAIIAAHRDT--QGSLITVLRLCQDIVGYFPLELIRYIASGMNQPLSTVYG 80 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY+ F L P G R +++VC T C +RG ++++ + K G S E Sbjct: 81 VISFYSLFSLKPKG-RHNIRVCTGTACYVRGVREVLDRVERRFGVKAGGTCESGRFSLEP 139 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C GAC AP++++ +DT+ +TP+ EI++ + Sbjct: 140 VRCLGACGLAPVMVVDRDTHGGVTPDSACEILEGY 174 >gi|160902192|ref|YP_001567773.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] gi|160359836|gb|ABX31450.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] Length = 169 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 +S +I +L + QE G++ ++VA L + +V + TFY F P G + Sbjct: 26 EEERRSLLIEVLHKVQENLGYIPNEVQKLVAKKLKIPSSQVYGVVTFYNFFSTKPKG-KY 84 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC T C + G ++++ + ++ + DG S V C GAC AP+V IG+ Sbjct: 85 PISVCLGTACYVGGANEILDEFKKILNVEEEEVTEDGLFSIHPVRCLGACGLAPVVKIGE 144 Query: 155 DTYEDLTPERLEEIIDAFSTGQGDT 179 Y L + II + + ++ Sbjct: 145 KVYGRLKINDVRRIIRDYRAKEKNS 169 >gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS] gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS] Length = 294 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 9/180 (5%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 +++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY+ Sbjct: 41 ADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYS 98 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEVE 139 ++ +P G V VC T C + G +++++ ++ + ++ E +E Sbjct: 99 MYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIE 157 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID--RISSAPAGGL 197 C AC AP+VM+ + +++ TP +++D+ G T G + R ++ GL Sbjct: 158 CNAACDYAPVVMVNWEFFDNQTPTSARDLVDSLRAGTPATPTRGAPLCTFRETARTLAGL 217 >gi|24372604|ref|NP_716646.1| NADH dehydrogenase subunit E [Shewanella oneidensis MR-1] gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subunit [Shewanella oneidensis MR-1] Length = 180 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S F S+ + Y R +A I L Q+ GWV AI +A L + Sbjct: 24 SDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIAAELGIPAS 81 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++VC + C + G E+L+ + ++ P DG Sbjct: 82 DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLMAGLKEVMNLAPGQTTPDGRF 140 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V C G C P +MI DTY L P L + ++A+ Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPITLLKTLEAY 179 >gi|302875115|ref|YP_003843748.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|307690259|ref|ZP_07632705.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium cellulovorans 743B] gi|302577972|gb|ADL51984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 160 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 SE + E I + + ++ +I +L +AQE G++ R ++ L + Y +V Sbjct: 6 KLSEGKYKELEEFIKLH--NNNEAHLIVILHKAQELFGYLPREVQVFISKKLGIPYSKVY 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F + G + + VC T C +RG +++E K+ DG + + Sbjct: 64 GVVTFYSFFSTTAKG-KYVINVCKGTACFVRGAGEILEEFEKKLEINQGETTQDGKYTID 122 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C GAC AP+V + Y + ++++I +S Sbjct: 123 TLRCVGACGLAPVVSVNGKVYGHFNKKDVDKLIQEYSE 160 >gi|298528320|ref|ZP_07015724.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511972|gb|EFI35874.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 173 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 3/169 (1%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 + + F+P + + ++ +I AV +L R Q+ G++ ++ Sbjct: 7 HTDSSDYFRPMHSDITPDMWQDIDRIIQ--ESLDIPGAVTQVLRRCQDLVGYLPVELLDY 64 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +A +++ V +A+FY+ F L P G R ++VC T C ++G + ++ + H Sbjct: 65 IARGMNIPASEVFGVASFYSLFSLKPRG-RNIIRVCTGTACHVKGADLVMRRLKQTYHLD 123 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D + E V C GAC AP + I + + +TP++ +++ + Sbjct: 124 DGSTTPDRRFTLESVRCMGACGLAPAMTINQTAHGHITPDQALKLLQEY 172 >gi|325278930|ref|YP_004251472.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter splanchnicus DSM 20712] gi|324310739|gb|ADY31292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter splanchnicus DSM 20712] Length = 158 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S + + E+ + +I +L +AQ G++ +VA+ L++ Sbjct: 2 SEIQLPQHKIDKLLEICDAH--GNQPGELINVLHKAQHLFGYLPAEVQRIVADKLNIPVS 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V + TFY+ F ++P G + VC T C +RG EK+++ + ++ DG Sbjct: 60 KVYGVVTFYSFFTMTPKGE-HPISVCMGTACYVRGAEKVLDEFKRILNINVGETTPDGKY 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + C GAC AP+V+IG+ + + P +E+I+ Sbjct: 119 SLSSLRCVGACGLAPVVLIGEKVFGRVVPGDVEKILKEL 157 >gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS] gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS] gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS] gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS] Length = 294 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 9/180 (5%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 +++RYP +R SA++PLL Q ++G ++ A I AN L + V +ATFY+ Sbjct: 41 ADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYS 98 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEVE 139 ++ +P G V VC T C + G +++++ ++ + ++ E +E Sbjct: 99 MYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIE 157 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID--RISSAPAGGL 197 C AC AP+VM+ + +++ TP +++D+ G G + R ++ GL Sbjct: 158 CNAACDYAPVVMVNWEFFDNQTPASARDLVDSLRAGTPAAPTRGAPLCTFRETARTLAGL 217 >gi|206896425|ref|YP_002246547.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM 5265] gi|206739042|gb|ACI18120.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM 5265] Length = 172 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 7/155 (4%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + E+ + ++I +L AQE G++ E+++ + + I Sbjct: 14 EEFRAKLEEL------KKVPGSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIV 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY++F + P G + + +C T C +RG +++E + + SDG S E Sbjct: 68 TFYSRFSIVPAG-KYKISLCLGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAAR 126 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP++MI + Y LTP+ ++I Sbjct: 127 CLGACALAPVMMINGEVYGRLTPDEAVKVIQRIKK 161 >gi|295110159|emb|CBL24112.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus obeum A2-162] Length = 159 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I Y R +++IP++ Q + ++ + VA+ + + + Sbjct: 2 LDQSYYAKTDEIIEHY--GRKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R + E ++ H D + E Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP + + + + +TPE+ E+++ Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIELLNELR 155 >gi|147678347|ref|YP_001212562.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum thermopropionicum SI] gi|146274444|dbj|BAF60193.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum thermopropionicum SI] Length = 162 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E + ++I +Y + +I +L RAQE G++ R A+ ++A L ++ V + Sbjct: 11 DELTKQLEKIIDQY--RGQPTGLIQVLTRAQELIGYLPRWALIMIAEGLGLSLQEVYGVV 68 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L P G R + VC T C ++G + +++ R I KP D + E V Sbjct: 69 TFYAFFSLIPRG-RHKISVCAGTACYVKGTKMVLKTLREAIGIKPGQTTPDSRFTLEIVR 127 Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173 C GAC AP ++I D + L PE++ I++ ++ Sbjct: 128 CIGACGLAPAMIIDGKDVHGRLEPEQIPAILEQYA 162 >gi|90416714|ref|ZP_01224644.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma proteobacterium HTCC2207] gi|90331467|gb|EAS46703.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma proteobacterium HTCC2207] Length = 162 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 3/164 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S+ ++ ++ +Y ++ A++PLL Q G+V +A+ ++A L+++ V Sbjct: 1 MGISQNEQQSISALVGQY--TQLPGALLPLLHAIQSDLGYVPDSAVPIIAKGLNLSRAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY F+ +PVG R VQVC C G +L + + +DG ++ Sbjct: 59 HGVISFYHDFKTTPVG-RHTVQVCRAEACQSMGSRQLEAHAKQALGIDYGETTADGAVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 E V C G C +P V I Y + + ++++ T +G + Sbjct: 118 EPVYCLGNCACSPSVRIDDAIYARVDTDLFDDLMSGLLTEEGAS 161 >gi|330508799|ref|YP_004385227.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta concilii GP-6] gi|328929607|gb|AEB69409.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta concilii GP-6] Length = 153 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + + E+I Y + ++I LL+ Q + W+S+ A++ ++ L + R+ IA Sbjct: 3 DNEHKRLVEMIDGYKG--KEGSLIQLLLDLQSEFNWISKDALQEISERLKIPPSRIYRIA 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY L P+G + + VC T C +RG +++ +K+ K D + + V Sbjct: 61 SFYEAISLKPIG-KHKISVCMGTACQVRGSGMILDRTESKLKIKQGGTTPDMRFTLKRVN 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C P++++ D + LT +R+E II + Sbjct: 120 CLGCCAIGPVMVVDDDYHGRLTSDRVERIIKKY 152 >gi|295798104|emb|CAX68923.1| NADH-quinone oxidoreductase 24 kD subunit E [uncultured bacterium] Length = 161 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + + + YP R + ++P+L QEQ ++ E VA + V E+ Sbjct: 10 ETLRHQADSICANYPVKR--AGLLPVLRLIQEQYSFIPPHVEEQVAQYFQIPPADVREVM 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFYT F P + + VC T C L G ++++ K+ KP +DG + +EVE Sbjct: 68 TFYTLFHSKPR-AKCEINVCRTLSCSLMGAKEMVAYISEKLGIKPGETTADGRFTLKEVE 126 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC APM +G + LT E+++ II + Sbjct: 127 CLGACEIAPMAQVGHEYVGPLTREKIDHIIQQY 159 >gi|123446843|ref|XP_001312168.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein [Trichomonas vaginalis G3] gi|55793665|gb|AAV65813.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Trichomonas vaginalis] gi|121894006|gb|EAX99238.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein [Trichomonas vaginalis G3] Length = 201 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 5/166 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74 F FS++S V+ ++++YP ++A IPLL Q + G +++ ++ ++ I+ + R Sbjct: 25 FKFSDQS--KVDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGR 82 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTL 133 V E A FY+ F+ P V+VC C L G + + E + ++ DG Sbjct: 83 VHETACFYSMFRFQPP-NNHIVEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDGQF 141 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + EEVEC GAC NAP++++ Y++LT E + II+ G+ Sbjct: 142 TLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGKSVK 187 >gi|91200212|emb|CAJ73256.1| strongly similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit (NuoE) [Candidatus Kuenenia stuttgartiensis] Length = 156 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ G++ A+E V+ D+ R+ + TFY+QF L P G + V++C Sbjct: 27 LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSLVPRG-KHTVRLCAG 85 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G + E + + K D + + V C G C AP++MI Y LT Sbjct: 86 TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 145 Query: 162 PERLEEIIDAF 172 E+ EEI+ ++ Sbjct: 146 EEKTEEILKSY 156 >gi|325261422|ref|ZP_08128160.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] gi|324032876|gb|EGB94153.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5] Length = 170 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 3/154 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E+ + Y + ++I +L AQ G++ EV+A+ LD+ V + TFY Sbjct: 19 LQRIGELAAEY--RGKEGSLIQVLHMAQGLYGYLPLEVQEVIADSLDLPLAEVSGVVTFY 76 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F P G + ++VC T C +RG +K++E + + + D ++E C G Sbjct: 77 SFFATQPRG-KHTIRVCLGTACYVRGGKKIVERLKKILDVEIGETTKDRKFTFEVARCIG 135 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 +C AP + I Y+ + P++LE+I+ + + Sbjct: 136 SCGLAPAMSIDDQVYKQVNPDKLEQILQRYYEEE 169 >gi|304312243|ref|YP_003811841.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] gi|301797976|emb|CBL46198.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1] Length = 180 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E A + +S+YP ++ S I L Q GWVS +++ VA L ++ V Sbjct: 24 LSPEEAAEILAGLSQYPDNQAMS--IEALKIVQHHRGWVSNESLKAVAAFLRLSPEEVEG 81 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY VGT V+VC + C + GCE L+ +NK+ +DG + Sbjct: 82 VATFYNLVYRQRVGT-HVVRVCDSVSCWIMGCEALVGELQNKLQLTLGETTADGRFTLLP 140 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC +AP+VM+G D + D+ E ++ ++ + Sbjct: 141 GPCMGACDHAPVVMVGDDYHFDVKAEAIDALLKPYR 176 >gi|289523905|ref|ZP_06440759.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502561|gb|EFD23725.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 177 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + +++++ +IPLL R QE G++ + A+ ++ +L + Y +V +ATFY Sbjct: 31 KELEDIVNKAKEENL--GLIPLLQRTQEVIGYLPKEALVALSEMLHIPYSKVFGVATFYA 88 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 QF L+P G R +Q C T C ++G ++ V K+ P D ++E V C G+ Sbjct: 89 QFHLTPRG-RHVIQQCDGTACHVKGGPRIRRVIEEKLGISPGETTEDLKATYEIVYCLGS 147 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP MI LT E+++ I+D+ Sbjct: 148 CGLAPAAMIDGKVIGRLTQEKMKRILDSM 176 >gi|260588481|ref|ZP_05854394.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583] gi|260540956|gb|EEX21525.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583] Length = 159 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I Y R S++IP++ Q + ++ + VA + + + Sbjct: 2 LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R ++E + ++ K H D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKKHTTDDMLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP + + + Y +TPE+ +I Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELR 155 >gi|332971175|gb|EGK10139.1| NADH-quinone oxidoreductase subunit E [Psychrobacter sp. 1501(2011)] Length = 170 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++E I YP +R +A + L Q++ GWV A + +AN+LD+ + Sbjct: 18 LTAQEIEGIHEYIHHYPQAR--AASLDALKLVQKRNGWVDDAQVNAIANLLDVPVTDIEG 75 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + SPVG R + VC + C L G E L ++++ + +DG + Sbjct: 76 VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEGLAAELKSQLGIEFGQTTTDGRFTLLP 134 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P V+I +DT+ +TP+++ E+++ + Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVTPDQVAELLEYY 169 >gi|300854658|ref|YP_003779642.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM 13528] gi|300434773|gb|ADK14540.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM 13528] Length = 160 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E ++ I + ++I +L RAQ+ G++ +AN LD++ +V Sbjct: 5 KLDNEKLKELSSYIDSLEE--KEGSLISVLHRAQDIFGYLPEELQTFIANKLDISAAKVF 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F + P G + + +C T C ++G E ++E RN++ K DG + + Sbjct: 63 GVVTFYSYFTMKPKG-KHVISICMGTACFVKGAENILEEFRNQLKVKDGFTTEDGLFTID 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C GAC AP+V++ + + E ++ I+ + Sbjct: 122 ILRCVGACGLAPVVVVDGTVHGKVKVEDVKGILSQY 157 >gi|260466531|ref|ZP_05812720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium opportunistum WSM2075] gi|259029680|gb|EEW30967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium opportunistum WSM2075] Length = 159 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 7/165 (4%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 QP+S + +A V E+ + ++P+L QE+ G V + V+A+ L+ Sbjct: 2 TMQPASTEIASRTAAIVQEL------KDVEGPLLPILHGIQEEFGHVPHDVLPVIADGLN 55 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 ++ V + TFY F+ P G R +++C C G + + + + Sbjct: 56 LSRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKVKQLLGIDFHETTR 114 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 DG+++ E V C G C +P M+ + L ++++EI+ + Sbjct: 115 DGSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIVAEVRS 159 >gi|115375220|ref|ZP_01462486.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella aurantiaca DW4/3-1] gi|310818919|ref|YP_003951277.1| NADH dehydrogenase I subunit E [Stigmatella aurantiaca DW4/3-1] gi|115367782|gb|EAU66751.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella aurantiaca DW4/3-1] gi|309391991|gb|ADO69450.1| NADH dehydrogenase I, E subunit [Stigmatella aurantiaca DW4/3-1] Length = 162 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 18 FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 F+ E + E++S YPP R + ++P L Q+ +GW I +VA L++ Sbjct: 6 FTPEEQKKFDAGISEILSHYPPDRKSAGMLPALRLLQDLKGWCPPEGIRLVAKNLEVTPE 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R E+A+FY + L G + + VC C LRG EK++ NK+ K N T Sbjct: 66 RAYEVASFYVMYHLKKPG-KYTIDVCTNLSCSLRGAEKMLAYLENKLGLKAGEANE--TF 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + E EC +C AP + + +D +E+LT R++E++ Sbjct: 123 TLRETECLASCGTAPCLQVNEDHHENLTKARVDELLAKL 161 >gi|319779202|ref|YP_004130115.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis MCE9] gi|317109226|gb|ADU91972.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis MCE9] Length = 219 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 2/167 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S ++ ++ + +YP + QSAV+ L AQ + WVS ++ +A L+M + V Sbjct: 1 MLLSNKAYELIDAELKKYPEDQRQSAVMSALRIAQTELNWVSPEVVQDIATYLNMPVMAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY ++L PVG + + VC PC LR + I + K+ + DG ++ Sbjct: 61 QEVATFYNMYELQPVG-KYKITVCTNLPCALREGVQTINYLQEKLGIGIDETSQDGLITI 119 Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + EC GAC ++P+++I + R++E+ID +G Sbjct: 120 KSGECMGACGDSPVLLINNHHMCVRMDKARIDELIDDIYKEEGVEPA 166 >gi|310827346|ref|YP_003959703.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612] gi|308739080|gb|ADO36740.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612] Length = 162 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +++++S YP R S + ++ Q ++ ++ +A LD + +ATF Sbjct: 5 TKESIDKILSAYPRDRRHS--LAMMQDMQHHFNYIPEQGMKALAEYLDCPLSSLYSMATF 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y L P G + +++C T C +RG LI + ++ P + DG S E V C Sbjct: 63 YRALSLKPKG-KHIIKLCDGTACHIRGSVNLITGIKRELDISPGETSGDGLFSLETVNCL 121 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G+C AP+++I Y +T E+L EI++ + Sbjct: 122 GSCALAPVMVIDGVYYGKVTLEKLPEILNQYRE 154 >gi|251773163|gb|EES53716.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum ferrodiazotrophum] Length = 176 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ + + + AV+ +L Q++ G+V +E V L + + ++ + TFY+ Sbjct: 15 EEIDHICEEF--GNREGAVVQILQTIQDKYGYVPAEVLERVGEDLGIPHSKMFGVLTFYS 72 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 QF P G + ++VC T C +RG L++ + +H + D + E V C G+ Sbjct: 73 QFYREPRG-KFILKVCVGTACHVRGAGLLVDKIKENLHIEEGENTEDMMFTLEPVSCLGS 131 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGDT 179 C APM M+ +TY L+ +++ +++ F G+ +T Sbjct: 132 CALAPMAMVNGNTYGKLSGDKMVDLLKQFREESAGEPET 170 >gi|331082242|ref|ZP_08331369.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403036|gb|EGG82601.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium 6_1_63FAA] Length = 159 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I Y R S++IP++ Q + ++ + VA + + + Sbjct: 2 LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R ++E + ++ K H D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKQHTTDDMLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP + + + Y +TPE+ +I Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELR 155 >gi|251779355|ref|ZP_04822275.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083670|gb|EES49560.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 163 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ Sbjct: 1 MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134 +ATFY F L P G + +++C T C +RG ++E R + D + Sbjct: 59 YGVATFYENFSLQPKG-KYVIKICNGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C GAC AP+ + Y +T ++ +II Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157 >gi|188588389|ref|YP_001921433.1| Fe-hydrogenase gamma subunit [Clostridium botulinum E3 str. Alaska E43] gi|188498670|gb|ACD51806.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E3 str. Alaska E43] Length = 163 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ Sbjct: 1 MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134 +ATFY F L P G + +++C T C +RG ++E R + D + Sbjct: 59 YGVATFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C GAC AP+ + Y +T ++ +II Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157 >gi|307823548|ref|ZP_07653777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] gi|307735533|gb|EFO06381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] Length = 158 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V E+I+ A++P+L Q+ G++ ++ +A L ++ V + +FY F Sbjct: 11 VQEIIAALKD--KPGALLPILHGIQDAMGYIPAESVPYIATALSLSRAEVHGVISFYHYF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P G + + +C C G KL E ++K+ +DG S E V C G C Sbjct: 69 RDTPPGVQ-TIHLCRAESCQSMGGRKLEEHVKSKLGIDFHETTADGKFSLEPVYCLGNCA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170 +P + IGK+ Y ++ + + +I+ Sbjct: 128 CSPAMQIGKEIYGRVSADSFDAVIN 152 >gi|166032052|ref|ZP_02234881.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC 27755] gi|166027775|gb|EDR46532.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC 27755] Length = 162 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F +E+I+ + +R + ++IP++ QE+ ++ + VA + ++ + Sbjct: 5 FMLDASYYEKTDEIIACH--TREERSLIPIIQDIQEEYRYLPPELLSYVAGKIGISEAKA 62 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLS 134 +A+FY F G + ++VC T C +R ++E ++ K H D + Sbjct: 63 FSVASFYENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLNKDKHTTDDQLFT 121 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C GAC AP VMI + Y +TPE++ E+I Sbjct: 122 VETVSCLGACGLAPAVMINDEVYGKMTPEKMSELIKKLRE 161 >gi|187736102|ref|YP_001878214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia muciniphila ATCC BAA-835] gi|187426154|gb|ACD05433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia muciniphila ATCC BAA-835] Length = 193 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E F P+ F + E +E ++ YP + +SAV+P+L Q++ G++S AI V L Sbjct: 21 ERFYPA-FEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAWVGEKL 79 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK----- 123 +++ VL + TFY + G + H++VC T C + G + L + ++ Sbjct: 80 NISAAHVLGVVTFYPGLRQMCPG-KNHIRVCRTLSCAMAGADSLFDAICTRLGIDKNGID 138 Query: 124 ---PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P+ + DG S E VEC C P +M+ YE +TPE LEE+I + T Sbjct: 139 HHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQTA 193 >gi|187934365|ref|YP_001886498.1| Fe-hydrogenase gamma subunit [Clostridium botulinum B str. Eklund 17B] gi|187722518|gb|ACD23739.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B str. Eklund 17B] Length = 163 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 EE ++ +++ + + +S+VI ++ Q+Q ++ + A+ +A L ++ ++ Sbjct: 1 MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134 +ATFY F L P G + +++C T C +RG ++E R + D + Sbjct: 59 YGVATFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C GAC AP+ + Y +T ++ +II Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKKLKE 157 >gi|157364375|ref|YP_001471142.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] gi|157314979|gb|ABV34078.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga lettingae TMO] Length = 164 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + E ++E I+ +I +L +AQE G++S +A +L + Sbjct: 2 PDTCTTGERLFKELDEYIAS--TGAKPDKLISVLQKAQELFGYLSPEVQNHIAEMLKIPV 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + TFY F P G + V+VC T C ++G +++ E ++ DG Sbjct: 60 SQVYGVVTFYNFFSTRPKG-KVQVKVCLGTACYVKGADRIFERFLEELATSAEEPTKDGQ 118 Query: 133 LSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174 S V C GAC AP+V++G+ D Y + P+ + II+ + Sbjct: 119 FSVHAVRCLGACSMAPVVLVGEKDFYGRVKPDMVPRIIEKYRE 161 >gi|111075025|gb|ABH04875.1| NAD(P)H-quinone oxidoreductase 24 kDa subunit [Heliobacillus mobilis] Length = 171 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 3/165 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S + ++ YP + Q + +L Q++ ++ R ++E++A+ L++ ++ + Sbjct: 5 SPDRVAVTGRILEGYP--KEQRYTLAMLQDIQKEFQFIPRESMELIADYLELPLSKIYSL 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY L P G + +++C T C +R + L + +P DG S E V Sbjct: 63 ATFYKALSLRPKG-KHVIKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C GAC AP+++I + Y +TP +L+EII + G + R G Sbjct: 122 NCLGACAIAPVIVIDETFYGKVTPAKLQEIIAQYGDAFGQSDRSG 166 >gi|332652332|ref|ZP_08418077.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16] gi|332517478|gb|EGJ47081.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16] Length = 164 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S V E+I+ Y R Q +I ++ Q + ++S +E++A L++ +V +ATF Sbjct: 6 SLARVEEIINSYGCQRHQ--LIAIMQDVQAEFKYLSPQVLELIAQKLNIGVAKVYSVATF 63 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140 Y F L G + ++VC T C +R + + R + + ++DG + E V C Sbjct: 64 YENFSLEAKG-KYIIKVCDGTACHVRKSQPIYNAIREYLELEDKQKTSADGLFTLETVAC 122 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 GAC AP+V + + ++PE +++++ + Sbjct: 123 LGACGLAPVVTVNDQVHSKMSPELAIDLLESLRKEEA 159 >gi|255505333|ref|ZP_05345528.3| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM 14469] gi|255268421|gb|EET61626.1| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM 14469] Length = 172 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 4/157 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +E+I+ Y + +++IP++ Q ++ + VA + + + +ATFY Sbjct: 19 YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPGELLTYVAGQIGITEAKAFSVATFY 76 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141 F P G + ++VC T C +R ++E + ++ H D + E V C Sbjct: 77 ENFSFEPKG-KYIIKVCDGTACHVRKSAPILEAFQKELGLSAKKHTTDDMLFTVETVSCL 135 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP VM+ +D + +TPE+ ++I Q D Sbjct: 136 GACGLAPTVMVNEDVHPKMTPEKAIDLIRELRGDQHD 172 >gi|323703082|ref|ZP_08114737.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323531976|gb|EGB21860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 187 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE +++V++ Y R +I +L AQ G++ +++ +D+ V + Sbjct: 9 EEKFNRLDQVLAVY--GRDPEQLIRVLQEAQHIFGYLPEEVQAYISHKMDIPVSAVNGVV 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + +V VC T C ++G +K+ + R+++ K D + Sbjct: 67 TFYALFSTEPKG-KYNVNVCLGTACYVQGAQKIYDTFRDQLGLKDSDTTEDMLFTVRSSR 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C GAC AP++ + +D + LT + E+I + + + Sbjct: 126 CLGACGLAPVITVNEDVHGKLTARDVAELIGRYKKKEAAGEK 167 >gi|126666307|ref|ZP_01737286.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17] gi|126629108|gb|EAZ99726.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17] Length = 174 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 3/166 (1%) Query: 7 AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66 A + F E+ + Y + Q+A I L Q++ GWV AI +A Sbjct: 11 AADLITTDGFQLHEDDRQAMLTERDHY--EQPQAACIEALKIVQKRHGWVPDGAIVAIAE 68 Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 L + V +ATFY+ PVG R + +C ++ C L G E L EV ++ Sbjct: 69 TLGVGAGAVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTGYEALSEVLSERLGIGFGQ 127 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 DG + V C GAC P +MIG DT+ + + L+E+++A+ Sbjct: 128 TTGDGRFTLLPVCCLGACDRGPAMMIGDDTFGPIEADDLDELLEAY 173 >gi|160947615|ref|ZP_02094782.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270] gi|158446749|gb|EDP23744.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270] Length = 161 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 15 SFSFS-EESAIWVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 +F F+ EE+ ++E+ + A++P+L AQ G++ ++++A + + Sbjct: 2 AFVFNVEENQDKIDELCEFIDKKKDIPGALMPVLQEAQSIFGYLPEEIMDLIAKRMKIFP 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +ATFY+QF P G + V VC T C ++G ++++ ++I + + D Sbjct: 62 AKVFGVATFYSQFSFIPKG-KYQVSVCMGTACYVKGAQEILNEFCDRIGVEVGGTSEDLK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S + C G C AP+V I +D Y + + I+ + Sbjct: 121 FSVAQTRCIGECNLAPVVTINEDVYAHIKKADIRRIMRKYK 161 >gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] gi|151281625|gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] Length = 159 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + V +I++ + A++P+L Q G++ + + +A L+++ V + Sbjct: 5 TPFDLAAVEAIIAQRKAT--PGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVHGV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 T+Y F+ PVG VQ+C C RGCE L + + + D + + V Sbjct: 63 ITYYHFFRQHPVGE-HVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQTV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C + P + I D Y ++ E+ +I A Sbjct: 122 YCLGQCASGPAIQIDDDLYARVSKEKFNSLIQA 154 >gi|188585873|ref|YP_001917418.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350560|gb|ACB84830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 158 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E V ++ ++ + A IP+L Q++ G++ + + V ++ + + I T Sbjct: 10 EEVKKVENLVKKHQD--KKGAAIPILQDIQKELGYIPKEVLPKVTSLTKIPESDLYSIVT 67 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+QF+L PVG + VC T C L G E++ ++ + DG + E+V C Sbjct: 68 FYSQFRLQPVGD-NLIHVCHGTACHLAGAEEITNALVRELEIGDEGTSPDGKFTVEKVAC 126 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEI 168 G C AP++ I +T+ LTP++ +I Sbjct: 127 LGCCSLAPVMTINGETHGRLTPDKAVKI 154 >gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the NADH:ubiquinone oxidoreductase [Candidatus Kuenenia stuttgartiensis] Length = 162 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +IP+L QE+ G++ A+E V+ D+ R+ + TFY+QF P G + V++C Sbjct: 33 LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRG-KHTVRLCAG 91 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 T C ++G + E + + K D + + V C G C AP++MI Y LT Sbjct: 92 TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 151 Query: 162 PERLEEIIDAF 172 E+ EEI+ ++ Sbjct: 152 EEKTEEILKSY 162 >gi|134299513|ref|YP_001113009.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052213|gb|ABO50184.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] Length = 163 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V ++I + S +I +L Q G++ + + +A + ++ VL +ATFY QF Sbjct: 12 VQKIIDSHEG--KVSHLIGILQEVQSDYGYLPKEVLTYIATSMGISPATVLGVATFYAQF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGAC 144 L P G + ++VC T C +RG E ++ R ++ D + E V C GAC Sbjct: 70 SLIPKG-KYVIRVCDGTACHVRGSEPIMMALRKELGINTEKPTTDDLMFTLETVSCLGAC 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP+V+ ++ + +TP+ + EI+ + Sbjct: 129 GLAPVVVADEEVHGQMTPDGILEIVRKLA 157 >gi|258651220|ref|YP_003200376.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella multipartita DSM 44233] gi|258554445|gb|ACV77387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella multipartita DSM 44233] Length = 249 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 7/184 (3%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR+ F + F E + E+I+RYP SR SA++PLL Q EG VS+ IE Sbjct: 6 RRIGVPVFLDTGVVFDELTHGRAAEIIARYPMSR--SALLPLLHLVQSVEGCVSQQGIEF 63 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 A L + V +ATFYT ++ +P G V VC C G + + ++ Sbjct: 64 CAGQLGLTEAEVSAVATFYTMYKRTPCGE-HLVSVCTNALCAALGGDAIYATLSRRLGVG 122 Query: 124 ----PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + G+++ E EC AC +AP++ + + +++ TP+ +++ +G+ Sbjct: 123 HEQTAGEPGTPGSITLEHAECLAACDHAPVLTVNYEYFDNQTPDSALDLLTGLQSGERPH 182 Query: 180 IRPG 183 G Sbjct: 183 PTRG 186 >gi|254167374|ref|ZP_04874226.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] gi|197623637|gb|EDY36200.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Aciduliprofundum boonei T469] Length = 149 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V ++I+++ S ++ +L Q++ G++ AI+ +A L M V + A+FY Sbjct: 2 EEKVLQIINKHKN--KDSKLLAILHDVQDEFGYIPEDAIKTIAKELGMKKGEVYDAASFY 59 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F+ P G + V +C C ++G K+IE + K DG +++ VE G Sbjct: 60 SFFRFKPEG-KHEVMICDCIVCHIKGSGKIIERIEKEFGVKMGETTKDGKYTFKVVEGLG 118 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169 C ++P++M+ Y DLTP+++ EI+ Sbjct: 119 HCESSPVMMLDGKIYGDLTPDKVVEIL 145 >gi|172037234|ref|YP_001803735.1| NADH dehydrogenase I subunit E [Cyanothece sp. ATCC 51142] gi|171698688|gb|ACB51669.1| probable NADH dehydrogenase I chain E [Cyanothece sp. ATCC 51142] Length = 173 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ +E VA+ L + RV +ATFY F L P G Sbjct: 31 NHYRQDALIEILHKAQEAFGYLEPDVLEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHT 90 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +K++ + ++ K +D +S C GAC AP V+ Sbjct: 91 CV-VCLGTACYVKGSDKILAALQQELGIKSGETTADKQISLLSARCLGACGIAPAVVFDG 149 Query: 155 DTYEDLTPERLEEIIDAFS 173 + T E + E I + Sbjct: 150 EVTGKQTAENVLEKIKNWQ 168 >gi|269122187|ref|YP_003310364.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268616065|gb|ACZ10433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 158 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + A+I +L +AQE G++ + E +A+ L+ RV + +FY+ F + P G + Sbjct: 24 KEEALITVLHKAQEIFGYLPKEVQEFIADKLNEPLARVYGVVSFYSFFTMIPKGD-IAIS 82 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C +RG EK+++ ++++ K + DG S + + C GAC AP+V++ Y Sbjct: 83 VCLGTACFVRGAEKVLDEFQSRLGIKAGETSPDGKFSLDVLRCIGACGIAPVVLVNGKVY 142 Query: 158 EDLTPERLEEIIDAF 172 + + ++ I+ + Sbjct: 143 KKVEAGEVKNIVSEY 157 >gi|169831498|ref|YP_001717480.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638342|gb|ACA59848.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 155 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Query: 20 EESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + ++ ++S R S++I +L Q+ G++ + + VA+ L ++ V Sbjct: 2 PQQEPLLDRLVSYIEAHRGEPSSLIQVLSHVQQTVGYLPKPVLVEVADKLGLSLTEVYGT 61 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 A+FY F P G R + +C T C ++G + ++ K D S + V Sbjct: 62 ASFYAFFTFRPRG-RHGIALCNGTACYVKGSAAVKVRLEQELGIKAGDTTPDRRFSLDVV 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C AP++ + +D + + PE++ EI++ + Sbjct: 121 RCIGCCALAPVMTVDEDVHAGVEPEKVPEILEQYK 155 >gi|288959750|ref|YP_003450090.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] gi|288912058|dbj|BAI73546.1| NADH dehydrogenase I chain E [Azospirillum sp. B510] Length = 182 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 1/140 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 + A++P+L QE+ G++ AI ++A L+++ V + +FY +F+ G R Sbjct: 19 NRHLRGALLPILHALQEEFGYIDEEAIPLLATELNLSRADVHGVVSFYHEFRREKPG-RH 77 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC C G L++ + ++ +DG + E V C G C +P VMI + Sbjct: 78 IIKVCRAEACQSMGANALVDHIKTRLQVDFHGTTADGAFTLEPVFCLGNCALSPAVMIDE 137 Query: 155 DTYEDLTPERLEEIIDAFST 174 + + ++P+R + + Sbjct: 138 NLHGRVSPDRFDALAAETRA 157 >gi|281358698|ref|ZP_06245175.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281314824|gb|EFA98860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 170 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 VN+++ +Y +S +IP+L Q ++S+ I VA + + RV +ATFY Sbjct: 15 LAAVNKILEKY--DYSESKLIPILQEVQAVYKYLSKDMISYVATSIGVPPSRVYGVATFY 72 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQ 141 F + P G + +++C T C ++ ++ K+ + D + E V C Sbjct: 73 AHFSMQPKG-KYIIKLCDGTACHVKKSHGILNALYEKLKLSGDKRTSDDQLFTIETVSCL 131 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP++++ ++ Y TPE+ EI+D + Sbjct: 132 GACGLAPVMVVNEEVYGQCTPEKAIEIVDRIIAEE 166 >gi|91775075|ref|YP_544831.1| formate dehydrogenase subunit gamma [Methylobacillus flagellatus KT] gi|91709062|gb|ABE48990.1| formate dehydrogenase gamma subunit [Methylobacillus flagellatus KT] Length = 156 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 3/154 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + I + A++PLL Q+ ++ ++A L+++ V + T Sbjct: 3 DQMARIQSHIESH--QHMAGALMPLLHAIQDDLSYIPEECYGLIAKALNLSVAEVHGVVT 60 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F+ P G R +QVC C GC L ++ + SDG+++ E V C Sbjct: 61 FYHHFRTRPPG-RHVLQVCRAESCQAMGCGALESHVKSSLGIDYHETTSDGSITLEPVYC 119 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C +P +M+ + Y ++P+++E ++ + Sbjct: 120 LGNCACSPAIMLDDEIYGRVSPQQVESLLASARR 153 >gi|226355363|ref|YP_002785103.1| NADH dehydrogenase (quinone) subunit E [Deinococcus deserti VCD115] gi|226317353|gb|ACO45349.1| putative NADH dehydrogenase (quinone), subunit E (NADH-quinone oxidoreductase, subunit E) [Deinococcus deserti VCD115] Length = 209 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 5/173 (2%) Query: 16 FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+ + V ++I RYP P +SA++PLL Q EG++S A + + + Sbjct: 1 MSYFADKQGLVADIIRRYPDSPQGRRSALMPLLREVQNAEGFISEARMAEIGALCGTTAT 60 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY+ + P G R H+QVC T C L G ++L + +++ +P DG Sbjct: 61 EVRSVLSFYSTYHTVPTG-RHHLQVCSTLMCALAGSDELWDYLVSELDVQPGEVTPDGAF 119 Query: 134 SWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDTI-RPGP 184 S ++VEC G+C APM+ + YE++T + + ++ A GQ T P P Sbjct: 120 SVQKVECLGSCGTAPMMQVNDLGYYENVTRTKCDRLLSAMRAGQTPTPDNPVP 172 >gi|163857996|ref|YP_001632294.1| formate dehydrogenase subunit gamma [Bordetella petrii DSM 12804] gi|163261724|emb|CAP44026.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella petrii] Length = 188 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A++P+L Q++ G + A+ +A L+++ V + TFY F+ P G R ++ Sbjct: 47 QPGALLPILHAVQDELGCIPADAVPAIAEALNLSRAEVHGVLTFYPHFRTEPAG-RHVLE 105 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC C G E+L E R + ++DG ++ E V C G C +P VM+ + Sbjct: 106 VCRAESCQAMGGERLAEHARETLGCDFHGTSADGAVTLEPVYCLGLCAQSPAVMLDGQPH 165 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRP 182 +TP++L ++ Q D +P Sbjct: 166 ARVTPDKLGRLLS--RATQSDEAQP 188 >gi|310658967|ref|YP_003936688.1| hyma protein [Clostridium sticklandii DSM 519] gi|308825745|emb|CBH21783.1| HymA protein [Clostridium sticklandii] Length = 157 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F++E+ ++ VI+++ Q A++P+L A++ G++S E ++ LD+ + Sbjct: 6 FTQENFARLDLVIAQHKGE--QGALMPVLYEAKKIFGFISIDIQERISKGLDIPLSEIYG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ F G + VC T C ++G +K+I+ K++ + SDG S Sbjct: 64 VASFYSTFSDKQKGE-NIIAVCLGTACYVKGSQKIIDKISKKLNIEVGDTTSDGKFSLVP 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP+V I D Y + ++ I+ + Sbjct: 123 ARCVGACSLAPVVTINADVYGKAKLDDIDSILSNY 157 >gi|326790678|ref|YP_004308499.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] gi|326541442|gb|ADZ83301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] Length = 158 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 +++++ R S++I +L QE ++ ++ L M+ ++ +ATFY Sbjct: 9 ELDQILER--NGLEPSSIISILQDIQEIYRYIPEEIFPYLSEKLGMSTAKIYGVATFYEN 66 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143 F L P G + +++C T C +R ++ R + D + E V C GA Sbjct: 67 FSLEPKG-KYVIKICDGTACHVRKSIPILNALRETLSLSEEKVTTDDLLFTVETVSCLGA 125 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP++ I Y +TPE+ + ++ Sbjct: 126 CGLAPVMTINDKVYGSMTPEKAKALLSELRE 156 >gi|253997400|ref|YP_003049464.1| formate dehydrogenase subunit gamma [Methylotenera mobilis JLW8] gi|253984079|gb|ACT48937.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera mobilis JLW8] Length = 160 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E++ ++ +I+ + A++PLL Q+ G+V AA ++ L ++ V + Sbjct: 9 EDTDAVISRLIAEH--QHRPGALMPLLHAIQDNIGYVPEAAYPQISKALALSVAEVHGVV 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ G R +Q+C C G E L + ++ +D ++ E V Sbjct: 67 TFYHHFRTHKPG-RNVMQICRAESCQAMGSEALEAHAKKCLNIDYHQTTADDAVTLEAVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P VM+ + Y ++P L+ +I Sbjct: 126 CLGNCALSPSVMMNDEIYGRVSPSDLDALIAEARA 160 >gi|51892728|ref|YP_075419.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM 14863] gi|51856417|dbj|BAD40575.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM 14863] Length = 274 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLE 77 E V ++ RYP R +SA++PLL A + +++++ IE VA I +A V Sbjct: 12 ETCKDEVEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQS 71 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FYT F+ PVG + + VCG C L G +L+E + K DG ++ E Sbjct: 72 VCSFYTMFRRQPVG-KYLITVCGNMACHLLAGGSQLVEHMEKTLGIKVGETTPDGLITLE 130 Query: 137 EV-ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 EC AC AP++ + + +T E+ + ++ A G+G Sbjct: 131 VTGECLAACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEGP 173 >gi|158320024|ref|YP_001512531.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] gi|158140223|gb|ABW18535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus oremlandii OhILAs] Length = 158 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + +++++ +Y S++I +L Q ++ A++ VA +DM+ R+ Sbjct: 2 LTVDMKDRIDQILMKY--GNNPSSIITMLQEIQGVYRYLPEEALDYVAASMDMSASRIFG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSDGTLSWE 136 IATFY F L P G + +++C T C +R ++ ++ +H D + E Sbjct: 60 IATFYENFSLKPKG-KFIIKICDGTACHVRKSIPILNTLYKELSLNSEMHTTEDLMFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 V C GAC AP++ + Y +TPE E+++ Sbjct: 119 TVSCLGACGLAPVITVNDKVYGKMTPESTVELLNTLRE 156 >gi|257453970|ref|ZP_05619246.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus SK60] gi|257448635|gb|EEV23602.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus SK60] Length = 169 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E ++E + YP SR +A + L Q + GWV A + +ANIL + V Sbjct: 17 LTEAEIHDIHEFMHHYPQSR--AASLDALKIVQRRNGWVDDAQVNAIANILKIPVTDVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + SPVG R + VC + C L G E L + + D + Sbjct: 75 VATFYNRIYRSPVG-RHVILVCDSIGCYLVGAENLGQAFERTLGISFGQTTPDNRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P V+I +DTY + E + E+++ ++ Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQIEEIAELLEQYA 169 >gi|220929713|ref|YP_002506622.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulolyticum H10] gi|220000041|gb|ACL76642.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulolyticum H10] Length = 157 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ V+S+Y +S +I +L Q + ++ ++ VA LD+ ++ +ATFY F Sbjct: 9 VDGVLSKY--DNHKSHLIAVLQEIQNEYKYLPEDVLKYVAEKLDINLSKIFSVATFYENF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144 L P G + ++VC T C +R ++ R ++ H D + E V C GAC Sbjct: 67 SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSDNKHTTDDMLFTVETVSCLGAC 125 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++ I + +TP+ E+I + Sbjct: 126 GLAPVITINDKVHAKMTPDSTIELIKTLRS 155 >gi|270308167|ref|YP_003330225.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily [Dehalococcoides sp. VS] gi|270154059|gb|ACZ61897.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily [Dehalococcoides sp. VS] Length = 161 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%) Query: 19 SEE--SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + E ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV Sbjct: 8 TPEVIDLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFY F + P G + V VC T C + G K+++ + K D S E Sbjct: 66 HVATFYKLFSVIPKG-KHTVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C G C P+V++ + L E+I+ + Sbjct: 125 TVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160 >gi|93005406|ref|YP_579843.1| NADH dehydrogenase subunit E [Psychrobacter cryohalolentis K5] gi|92393084|gb|ABE74359.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter cryohalolentis K5] Length = 169 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E ++E + YP ++A + L Q++ GWV A + +ANIL++ + Sbjct: 17 LTAEEIAAIHEFMHHYP--HPRAASLDSLKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L ++++ +DG + Sbjct: 75 VATFFNRIYRQPVG-RHVILVCDSVACYLTGYEALAAELKSQLGINYGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P V+I +DTY + PE + ++++ ++ Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQPEEVAQLLELYA 169 >gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila UNI-1] gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1] Length = 173 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V +++++YP +SAV+PLL AQ +EG+V R A+E +A IL+M+ V I FYT Sbjct: 10 EEVKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVASIVGFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + P G R H+QVC PC LRG +K +E ++ + DG + E V+C A Sbjct: 70 LYYDQPAG-RYHIQVCTDLPCALRGADKFLEELCQRLGIREGETTPDGLFTVEAVKCLAA 128 Query: 144 CVNAPMVMIGKD----TYEDLTPERLEEIIDAFST 174 C AP+ + D +E+ T E ++ Sbjct: 129 CHRAPVFQVQGDGEIEYHENQTVELTLAWMEQVRE 163 >gi|225572044|ref|ZP_03780908.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM 10507] gi|225040479|gb|EEG50725.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM 10507] Length = 168 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 4/166 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 Q + +E+I Y R +S++IP++ Q + ++ + VA + + Sbjct: 5 QGGKRMLDQSYYKKADEIIEEY--GRKESSLIPIMQDIQAEYRYLPGELLTYVAKEIGVK 62 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSD 130 + +ATFY F P G + ++VC T C +R + E ++ H D Sbjct: 63 EAKAYSVATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSHKKHTTDD 121 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + E V C GAC AP + + + ++PE+ E+++ + Sbjct: 122 MMFTVETVSCLGACGLAPALNVNDVVHPKMSPEKALEMLEELRGEK 167 >gi|268591138|ref|ZP_06125359.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131] gi|291313364|gb|EFE53817.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131] Length = 183 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 3/164 (1%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E F +E+ + Y +R +A I L Q+ GWV AI +A++L Sbjct: 22 EPQVNHGFVLTEKEREEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADVL 79 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V +ATFY+Q PVG R ++ C + C + G + L +++ +P Sbjct: 80 GIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTT 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 +DG + C G C P +MI DT+ + PE ++++++ + Sbjct: 139 ADGRFTLLPTCCLGNCDKGPTMMIDDDTHSYVQPENIQKLLEQY 182 >gi|169832067|ref|YP_001718049.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638911|gb|ACA60417.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Desulforudis audaxviator MP104C] Length = 184 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 10/187 (5%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E + + ++++I RY +I +L +AQE G++SR VA + + V Sbjct: 1 MNVEERNYLVLDKIIERYGD--RPGGLIRVLYKAQELFGYLSRDVQTHVAEKMCLPVGHV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF +P G + V+VC T C ++ + ++ R + +P +DG + Sbjct: 59 HGVATFYSQFVTAPQG-KNVVRVCMGTACYVKNAQDILNRFRELLGVEPDETTADGLFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-TGQGDTIRPG------PQIDR 188 C GAC AP++ + + + L+ + ++D + G + + P P D+ Sbjct: 118 RTTRCIGACSLAPLLTVNESVHGHLSVYDVARLVDRYRKEGPDEEVSPVEHKRQRPARDQ 177 Query: 189 ISSAPAG 195 ++ P Sbjct: 178 RAAPPPN 184 >gi|77464659|ref|YP_354163.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides 2.4.1] gi|332559553|ref|ZP_08413875.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N] gi|77389077|gb|ABA80262.1| NAD-dependent formate dehydrogenase, gamma subunit (24 kDa) [Rhodobacter sphaeroides 2.4.1] gi|332277265|gb|EGJ22580.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N] Length = 157 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V++++ + + ++P+L QE G V ++ +A L+++ V + Sbjct: 6 AEVHARVDDILDAHEG--LEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G ++L E + ++ +DG ++ E V Sbjct: 64 SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C P ++ + RLE I++ Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157 >gi|94309498|ref|YP_582708.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cupriavidus metallidurans CH34] gi|93353350|gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus metallidurans CH34] Length = 169 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 A++P+L Q+ +G++ A+ VVA L+++ V + TFY F+ P G R VQV Sbjct: 29 PGALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHFRERPAG-RTVVQV 87 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L R + +DG + E V C G C P + IG + Sbjct: 88 CRAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMTIGDRLHG 147 Query: 159 DLTPERLEEIIDAFSTGQ 176 + +R +++IDA + Sbjct: 148 RVDMQRFDKLIDAVRERE 165 >gi|253577814|ref|ZP_04855086.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA] gi|251850132|gb|EES78090.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA] Length = 159 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I Y R +++IP++ Q + ++ + VA + + + Sbjct: 2 LDQSYYRKADEIIEHY--GRTAASLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R + E ++ H D + E Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP + + + + +TPE+ E+++ Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAVELLNKLR 155 >gi|51894342|ref|YP_077033.1| putative iron hydrogenase small subunit gamma [Symbiobacterium thermophilum IAM 14863] gi|51858031|dbj|BAD42189.1| putative iron hydrogenase small subunit gamma [Symbiobacterium thermophilum IAM 14863] Length = 186 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%) Query: 24 IWVNEVISRYPPSRCQSA--VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ I SA +I +L +AQE G++ VA L + V + TF Sbjct: 18 AELDAFI----QDGRSSADHLIAVLHKAQEIFGFLPEEVQRHVAAALHVPPSEVYGVVTF 73 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F L+PVG + + VC T C ++G +L+ + ++ +P DG S E C Sbjct: 74 YNYFTLTPVG-KYPINVCMGTACYVQGAGRLLSLFERELGIQPGQVTPDGLFSLEVCRCL 132 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP+V + + + LT +++ Sbjct: 133 GACGLAPVVTVAGEVHGKLTESDALKLVAELR 164 >gi|300114496|ref|YP_003761071.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii C-113] gi|299540433|gb|ADJ28750.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii C-113] Length = 154 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E ++ S YP ++ I + Q GW+S ++ +A+ L ++ + Sbjct: 2 LSAEEIKAIDAERSHYPTAQAVG--IEAMKIVQHHRGWISDESLREIADHLGLSVESLDG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 ATFY PVG + + +C + C + G E+L E + ++ DG + Sbjct: 60 AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQKELKIGLGETTQDGRFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++++ +D + DL E++ EI+ + Sbjct: 119 SCCLGACERAPVMIVDEDLHGDLDSEKIGEILADY 153 >gi|57234358|ref|YP_181589.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes 195] gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes 195] Length = 161 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV +ATF Sbjct: 13 DLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQALNVPVNRVYHVATF 70 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F + P G + +V VC T C + G K+++ + K D S E V C Sbjct: 71 YKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCL 129 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P+V++ + L E+I+ + Sbjct: 130 GCCALGPVVVVDGHYHGKLPTADAEKILADY 160 >gi|254520091|ref|ZP_05132147.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA] gi|226913840|gb|EEH99041.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA] Length = 173 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S++I +L AQ G++ R E +A L++ +V + TFY+ F P G + + + Sbjct: 37 ESSLISVLHHAQGLYGYLGREVQEYIAYRLNIPVSKVYGVITFYSYFSTEPKG-KYVISI 95 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C +RG ++E + + K +DG + + + C G+C AP+V++ Y Sbjct: 96 CTGTACFVRGACDILEDFKKILGIKEGETTNDGLFTLDTLRCVGSCAIAPVVLVNDKVYG 155 Query: 159 DLTPERLEEIIDAFST 174 T ++ E+I+ Sbjct: 156 YFTKPQVNELINNLRE 171 >gi|221640573|ref|YP_002526835.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides KD131] gi|221161354|gb|ACM02334.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides KD131] Length = 155 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V++++ + + ++P+L QE G V ++ +A L+++ V + Sbjct: 4 AEVHARVDDILDAHEG--LEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G ++L E + ++ +DG ++ E V Sbjct: 62 SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C P ++ + RLE I++ Sbjct: 121 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 155 >gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 574 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLE 77 +E+ ++ ++ RYP QSA++P LM AQ++ + + I VA ++D+ + + Sbjct: 3 TEQLKNDIHRLLGRYPE--KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYG 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +AT+Y+ + + R H+QV P L G ++++ ++ + DG + E Sbjct: 61 LATYYSMYNVEKPVGRYHLQVDTNIPATLMGAGEILDHLEKTLNIRAGETTPDGLFTLSE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 VEC +C P++ + YE++T E+++ ++D+ G Sbjct: 121 VECLASCGTCPVIQVNDVYYENMTREKVDSLLDSLRKG 158 >gi|145298720|ref|YP_001141561.1| NADH dehydrogenase subunit E [Aeromonas salmonicida subsp. salmonicida A449] gi|142851492|gb|ABO89813.1| NADH dehydrogenase I, E subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 188 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 3/167 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 F S+ + Y R +A I L Q+ GWV AI +A Sbjct: 24 DGPVPGPTDGFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIA 81 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L + V +ATFY+Q PVG R ++VC + C + G E L+ + + P Sbjct: 82 TELGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEGLLAGLKEVMDLAPG 140 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 ++DG + V C G C P +MI DTY L L + ++A+ Sbjct: 141 QTSADGRFTLLPVCCLGNCDKGPALMIDDDTYGGLDAATLIKTLEAY 187 >gi|108760187|ref|YP_629346.1| NADH dehydrogenase I subunit E [Myxococcus xanthus DK 1622] gi|108464067|gb|ABF89252.1| NADH dehydrogenase I, E subunit [Myxococcus xanthus DK 1622] Length = 162 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 7/160 (4%) Query: 18 FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 F+ E + E+IS YPP R + ++P L QE +GW+ + +VA L++ Sbjct: 6 FTSEEQKKFDAGIAEIISHYPPDRKSAGMLPALRLLQEIKGWLPPEGLRLVAKHLEVTPE 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 R +E+A+FY + L G + + VC C L G EK++ K+ K N Sbjct: 66 RAMEVASFYVMYHLKKPG-KYVIDVCTNLSCSLWGAEKMLAYLEEKLGLKAGEANE--KF 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E EC +C AP + I +D +E LT +L+ I+ S Sbjct: 123 TLRETECLASCGTAPCLQINEDHHESLTQAKLDAILAKLS 162 >gi|87120637|ref|ZP_01076531.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp. MED121] gi|86164280|gb|EAQ65551.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp. MED121] Length = 189 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 3/156 (1%) Query: 21 ESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + + V+ R ++P+L Q Q G+V +++ ++ L+++ V + Sbjct: 22 ANQAEIESVVGRILVELKDIPGPLLPILHEVQHQLGYVPDSSLPIIGKALNISRAEVHGV 81 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY F P G R ++VC C G L ++ + D ++ E V Sbjct: 82 VTFYHHFSSKPRG-RHIIEVCRAESCQSMGGRDLEAHAKSALGLDWYQTTMDKEITLEPV 140 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P + +G + Y + E+ +EI+D T Sbjct: 141 FCLGNCACSPAIRVGDEVYGRMDAEQFDEIVDELRT 176 >gi|156741349|ref|YP_001431478.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus castenholzii DSM 13941] gi|156232677|gb|ABU57460.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Roseiflexus castenholzii DSM 13941] Length = 173 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+V R + +S + + + ++ A+I +L RAQE G++S Sbjct: 1 MAVTRSQPPVSEQASHPSGDNRFKLLEATMKKH--QYRPDALIEVLHRAQELFGYLSNDL 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +AN L + RV +ATFY F L+P G + V VC T C +RG ++ + Sbjct: 59 LLYIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCLGTACYVRGAAAILAAAEQTL 117 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + H DG LS E C GAC AP V+ TPE+++ ++ Sbjct: 118 GIRAGHTTPDGRLSLETARCLGACGIAPTVVFDGAITGHQTPEQVQVWLERLKE 171 >gi|326204153|ref|ZP_08194013.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325985664|gb|EGD46500.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 163 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIAT 80 V E+++RY S+ +I +++ Q G + + VA LDM RV + T Sbjct: 8 MEKVKEILNRYGNSK--DNLIQVMLELQNISGTNSLPHDWVVFVAEALDMPVSRVYSVIT 65 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+ F P G + V+VC + PC + G + ++++ K+ KP DG + + C Sbjct: 66 FYSMFGNEPRG-KYLVEVCKSGPCHVSGAKTVLQLIEEKLGLKPGETTEDGVFTLIQSSC 124 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP + IG+ Y +LT E+L EI+D++ GQ + Sbjct: 125 FGACDIAPAIKIGEKVYGNLTAEKLTEIVDSYREGQHN 162 >gi|301063637|ref|ZP_07204151.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300442285|gb|EFK06536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 175 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + +I +L Q ++ + + +A + + R+ +ATFY+ F L P G + Sbjct: 31 GNDKENLIMILQAIQAAYNYLPQPVLAYLAEKIGIPLSRIYGVATFYSTFSLEPRG-KNI 89 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C T C +RG K+++ + +H DG + E V C G C P+V I +D Sbjct: 90 INICLGTACHVRGAGKVLQRIEDTLHVDNGKTTEDGQFTLESVRCIGCCSLGPVVKINED 149 Query: 156 TYEDLTPERLEEIIDAF 172 Y + E L++I+D + Sbjct: 150 VYGRIGSEDLDKILDHY 166 >gi|113866667|ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] gi|113525443|emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 A + +++ A++P+L Q+ +G++ AA+ V+A L+++ V + T Sbjct: 12 ADATRIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVIT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F+ P G R VQVC C G E L E + + +DG ++ E V C Sbjct: 70 FYHHFRQQPAG-RHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYC 128 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 G C P VM+G+ + + R + ++ + + Sbjct: 129 LGQCACGPAVMVGEQLHGYVDARRFDALVRSLRESSAEK 167 >gi|323702071|ref|ZP_08113739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] gi|323532953|gb|EGB22824.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum nigrificans DSM 574] Length = 162 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V ++I + + +I +L Q + G++ + + +A L ++ VL +ATFY Q Sbjct: 10 KVQQIIDAHEG--KVAHLIAILQETQAEYGYLPKEILTYIATALGVSPATVLGVATFYAQ 67 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143 F L P G + ++VC T C +RG E ++ R ++ P + D + E V C GA Sbjct: 68 FSLIPKG-KYVIRVCDGTACHVRGSEPIMMAIRKELGISPDNPTTDDLMFTVETVSCLGA 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C AP+V+ ++ + +TP+ + EII+ + Sbjct: 127 CGLAPVVVAHEEVHGQMTPQGIVEIINKLA 156 >gi|288818980|ref|YP_003433328.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] gi|288788380|dbj|BAI70127.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] gi|308752565|gb|ADO46048.1| formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus TK-6] Length = 153 Score = 184 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E IS+ + A+IP+L QE++G++ ++++++ L+++ V + TFY+ F+L Sbjct: 8 EEISKLKSKKN--ALIPILHIIQERQGYIPEYTVDLLSSELNLSKAEVWGVITFYSDFRL 65 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G + ++VC + C+ G K+ E + + DG + E V C G C A Sbjct: 66 KPPG-KHIIKVCRSEACLAMGGRKVQEHIKCILGIDFGQTTHDGIFTLEGVYCFGNCACA 124 Query: 148 PMVMIGKDTYEDLTPERLEEIID 170 P VM+ Y PER++ I++ Sbjct: 125 PSVMVDGKLYGRAFPERIDMIME 147 >gi|302337011|ref|YP_003802217.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634196|gb|ADK79623.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 162 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E N +I + +R A+IP+L AQ G++ + ++ ++ L + Y V + Sbjct: 7 KEMIDQTNAIIDSFLDTR--GALIPVLQNAQNLFGYLDQEVLKQISRRLQIPYSEVAGVV 64 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FY+ F P G V+VC T C +RG ++++ ++ + D S E Sbjct: 65 GFYSYFSTVPRGE-HIVRVCLGTACYVRGGKEVLSALQDVLGIDVGETTEDRVFSLEIGR 123 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 C GAC +P+VMI +D ++ + P + +I+ + T + Sbjct: 124 CFGACGLSPVVMIDEDVHQRVKPATVRDILFPYRTKEA 161 >gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG [Herminiimonas arsenicoxydans] gi|133740484|emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas arsenicoxydans] Length = 159 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V +I+ A++P+L Q G++ + +A+ L+++ V + T+ Sbjct: 8 DMAAVESIIASRKE--MPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVHGVITY 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G + +Q+C C RGCE L++ + + DG S E V C Sbjct: 66 YHFFRQHPAG-KHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEVVYCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C + P + I D Y ++ E+ +I A Sbjct: 125 GQCASGPAIQIDDDLYARVSKEKFNNLIQA 154 >gi|303245640|ref|ZP_07331923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|466363|gb|AAA87054.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] gi|302492903|gb|EFL52768.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 171 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 + + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + Sbjct: 37 QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KYPI 95 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 VC T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Sbjct: 96 SVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKV 155 Query: 157 YEDLTPERLEEIIDAF 172 Y ++TP ++++I+ + Sbjct: 156 YGNVTPGQVKKILAEY 171 >gi|291549369|emb|CBL25631.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus torques L2-14] Length = 159 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +E+I++Y ++IP++ QE+ ++ + VA L ++ + +A+FY Sbjct: 7 YEKTDEIIAQYTCEEK--SLIPIIQGIQEEYRYLPPELLTYVAEKLGISEAKAYSVASFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141 F G + ++VC T C +R ++E ++ K H D + E V C Sbjct: 65 ENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLGKKKHTTDDQLFTVETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP VM+ + + +TPE++ E+I + Sbjct: 124 GACGLAPAVMVNDEVHPKMTPEKMSELIKKLREEE 158 >gi|332296986|ref|YP_004438908.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema brennaborense DSM 12168] gi|332180089|gb|AEE15777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema brennaborense DSM 12168] Length = 160 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 FS E +++E +I +L + QE++G++S+ A + VA + RV Sbjct: 9 FSPELNAFIDEW------KVKPGNLIMILHKVQEEQGFISKEAAQAVAERTNSPLARVYG 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWE 136 + TFY F+ G + V VC T C L+G + LI+ R+ + K DG S E Sbjct: 63 VMTFYHFFKTQKPG-KNKVSVCLGTACYLKGGQDLIDEARSILGLKAEDISTEDGLFSVE 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 V C G C AP++ + D Y LT ++ I+D + Sbjct: 122 PVRCIGCCGLAPVLSVNGDVYGKLTKNQIAGILDKYRNA 160 >gi|17228246|ref|NP_484794.1| bidirectional hydrogenase complex protein HoxE [Nostoc sp. PCC 7120] gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [Nostoc sp. PCC 7120] Length = 164 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ I R+ Q A+I +L +AQE G++ + +A+ L + RV +A Sbjct: 14 DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P G + V VC T C ++G ++ +DG LS Sbjct: 72 TFYHLFSLAPQGVHSCV-VCTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTAR 130 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167 C GAC AP V+ + TPE + E Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVNE 158 >gi|153812807|ref|ZP_01965475.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174] gi|149831167|gb|EDM86256.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174] Length = 159 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I Y P +++IP++ Q + ++ + VA+ + + + Sbjct: 2 LDQSYYAKTDEIIEHYGP--KPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R + E ++ H D + E Sbjct: 60 VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP + + + + +TPE+ ++++ Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIDLLNELR 155 >gi|325972138|ref|YP_004248329.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] gi|324027376|gb|ADY14135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] Length = 157 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 + F+FS ++ E ++ +I +L + Q+++G++SR A ++VA LD+ Sbjct: 3 DNNEFTFSPALVSFIKEWKTK------PGNLIMVLHKVQQEQGYISREAADLVAAQLDVP 56 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + + +FY F+L+ G + ++QVC T C L+G + LI+ ++H DG Sbjct: 57 LATIWGVVSFYHFFKLTKPG-KHNIQVCLGTACYLKGAQPLIDEIDKQLHLPVGAVTEDG 115 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S + V C G C AP++ +G + + +T +++ II F Sbjct: 116 NFSLDAVRCVGCCGLAPVMTVGGEVFGKVTKDQISGIIAKFR 157 >gi|75910849|ref|YP_325145.1| bidirectional hydrogenase complex protein HoxE [Anabaena variabilis ATCC 29413] gi|75704574|gb|ABA24250.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Anabaena variabilis ATCC 29413] Length = 164 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 3/148 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ I R+ Q A+I +L +AQE G++ + +A+ L + RV +A Sbjct: 14 DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P G + V VC T C ++G + ++ +DG LS Sbjct: 72 TFYHLFSLAPQGVHSCV-VCTGTACYVKGAQAILTDLEKSTRIHAGETTADGQLSLLTAR 130 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167 C GAC AP V+ + TPE + E Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVSE 158 >gi|71065154|ref|YP_263881.1| NADH dehydrogenase subunit E [Psychrobacter arcticus 273-4] gi|71038139|gb|AAZ18447.1| NADH dehydrogenase I, E subunit [Psychrobacter arcticus 273-4] Length = 169 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E ++E + YP ++A + L Q++ GWV A + +ANIL++ + Sbjct: 17 LTAEEIAAIHEFMHHYP--HPRAASLDALKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + +C + C L G E L + ++ +D + Sbjct: 75 VATFFNRIYRQPVG-RHVILICDSVACYLTGYEALAAELKAQLGIDYGQTTADKRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C G C P V+I +DTY + PE + ++++ ++ Sbjct: 134 ICCLGNCDKGPAVLINEDTYGPVQPEEVAQLLELYA 169 >gi|73748665|ref|YP_307904.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1] gi|289432691|ref|YP_003462564.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1] gi|288946411|gb|ADC74108.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 161 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 8/164 (4%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 E P S ++ ++ Y +I +L++ Q++ W+ + A+ V+ L Sbjct: 5 ESKSPEVIDLS-----KLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTL 57 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++ RV +ATFY F + P G + +V VC T C + G K+++ + K Sbjct: 58 NVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETT 116 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 SD S E V C G C P+V++ + L E+I+ + Sbjct: 117 SDLKFSLETVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160 >gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5] gi|6647652|sp|O66842|NUOE_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5] Length = 160 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + F F EE + E I+ +P R A++ L Q G++ +++ +A++L++ Sbjct: 4 TEFEFPEELKTKLQEHINYFPKKRQ--AILLCLHEIQNYYGYIPPESLKPLADMLELPLN 61 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + FY F + ++VC + C L G KL++ N + KP DG Sbjct: 62 HVEGVVAFYDMFDREDK-AKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKF 120 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V+C GAC AP+ M+ D Y+ + +L EI+ + Sbjct: 121 KIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRY 159 >gi|148657646|ref|YP_001277851.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus sp. RS-1] gi|148569756|gb|ABQ91901.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Roseiflexus sp. RS-1] Length = 178 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 4/158 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + ++ A+I +L RAQE G++S + +AN L + RV +ATFY Sbjct: 24 KLLEATMKKH--QYRPDALIEVLHRAQELFGYLSTDLLLFIANSLHLPPSRVYGVATFYH 81 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F L+P G + V VC T C +RG ++ + K H DG LS E C GA Sbjct: 82 FFSLAPKGEHSCV-VCLGTACYVRGAAAILAAAEQMLGIKAGHTTPDGRLSLETARCLGA 140 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C AP V+ TPE+++ ++ TG+G + Sbjct: 141 CGIAPTVVFDGTVTGHQTPEQVQVWLERL-TGEGLKAK 177 >gi|147669424|ref|YP_001214242.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|146270372|gb|ABQ17364.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1] Length = 161 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ ++ Y +I +L++ Q++ W+ + A+ V+ L++ RV +ATF Sbjct: 13 DLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATF 70 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F + P G + +V VC T C + G K+++ + K SD S E V C Sbjct: 71 YKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCL 129 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P+V++ + L E+I+ + Sbjct: 130 GCCALGPVVVVDGHYHGKLPTADAEKILADY 160 >gi|255524300|ref|ZP_05391258.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296185257|ref|ZP_06853667.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] gi|255511983|gb|EET88265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium carboxidivorans P7] gi|296050091|gb|EFG89515.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium carboxidivorans P7] Length = 160 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E ++ I + ++I +L AQ+ G++ +AN LD++ +V Sbjct: 5 KLDNEKLKELSSYIDNLEE--KEGSLINVLHEAQDMFGYLPEELQIFIANKLDISAAKVF 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+ F + P G + + +C T C ++G E ++E R +++ K DG + + Sbjct: 63 GVVTFYSYFTIEPRG-KHVISICMGTACFVKGAENVLEEFRKELNIKDGFSTEDGLFTID 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C GAC AP+V+I Y + E ++ I+ ++ Sbjct: 122 ILRCVGACGLAPVVVIDGMVYGKVKVEDVKGILSQYTE 159 >gi|270308047|ref|YP_003330105.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] gi|270153939|gb|ACZ61777.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] Length = 157 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V +++++Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+ Sbjct: 12 KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G + + VC T C +RG K+++ K+ D S + V C GAC Sbjct: 70 FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P+V++ ++T E+++ +I+ Sbjct: 129 ALGPVVVVDGQYMGNMTTEKVKPLIEGCQ 157 >gi|257053165|ref|YP_003130998.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus utahensis DSM 12940] gi|256691928|gb|ACV12265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus utahensis DSM 12940] Length = 186 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 3/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ V EV+ P ++ VIP L QE+ G++ + +E++A + V A Sbjct: 36 DDEIETVREVLVDVPTAKE--GVIPALQDVQEEYGYLPKFTMELIAEHTGTSIAHVYGTA 93 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY+QF + P G ++VC T C ++G +++ E +++ DG + + V Sbjct: 94 SFYSQFHMEPRGD-HTIKVCTGTACHVKGADEVSEAFCDELDVDLQDVTDDGKFTVDHVR 152 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC A VM+G + Y D+ P+ ++++I+ + Sbjct: 153 CIGACSLAVAVMVGDEVYGDVQPDEVDQVIEEYR 186 >gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 A + +++ A++P+L Q+ +G++ AA+ V+A L+++ V + T Sbjct: 12 ADATRIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVIT 69 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F+ P G R VQVC C G E L E + + +DG ++ E V C Sbjct: 70 FYHHFRQQPAG-RHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYC 128 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 G C P VM+G+ + + R + ++ + + Sbjct: 129 LGQCACGPAVMVGEQLHGYVDARRFDALVRSLRESSAEK 167 >gi|150388473|ref|YP_001318522.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149948335|gb|ABR46863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 169 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 3/167 (1%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L E+E +E + I P + +I +L +AQ+ G++ R VA Sbjct: 5 LKEQERNDLEKPLPKEKYQELEAYIDDLPS--LEGRLIQILHKAQQIFGYLPRDIQLFVA 62 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L ++ +V + TFY+ F P G + VC T C ++G K+IE ++++ K Sbjct: 63 RRLGISGAKVNGVITFYSYFTQEPRGE-HTINVCTGTACFVKGIGKIIEELESQLNIKLG 121 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D + ++V C GAC AP++++ + Y + PE +E+I+ + Sbjct: 122 KTTEDMKFTLKDVRCVGACGLAPLIVVDEKVYGRVKPEDVEKIMSEY 168 >gi|283853100|ref|ZP_06370355.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] gi|283571498|gb|EFC19503.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] Length = 171 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 + Q ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + Sbjct: 37 QKQGHLVTVLHKAQSVFGYLPIEVQQFVADYMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 VC T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Sbjct: 96 SVCMGTACFVKGADKVVRAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155 Query: 157 YEDLTPERLEEIIDAF 172 Y ++T ++++I+ + Sbjct: 156 YGNVTAGQVKKILADY 171 >gi|134299510|ref|YP_001113006.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum reducens MI-1] gi|134052210|gb|ABO50181.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1] Length = 158 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + ++ + ++Y + + +I ++ QE +G++ + + A L + V +ATF Sbjct: 10 NQSKLDALFAQYKGN--PNGLIVVMAAIQESQGYLPKDLLVRTAEELGVPLSDVYGVATF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F L P G R V +C T C ++G ++ + ++ K + D S + V C Sbjct: 68 YAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQSMLEKEMGIKAGNTTEDRRFSLDLVRCL 126 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP++ + + Y +T E++ E++ + Sbjct: 127 GACGIAPVLTVNGEVYPRMTAEKVTEVLSKY 157 >gi|319760613|ref|YP_004124551.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer str. BVAF] gi|318039327|gb|ADV33877.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer str. BVAF] Length = 155 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 ++E + E + Y +R +A I L Q+ GWVS AI ++A IL ++ V Sbjct: 1 MQLTKEELSIIREECNCYESTR--AASIEALKIVQKNYGWVSDDAIVLIAQILHISVSDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY Q PVG ++ C + C + GC + + ++ K + D + Sbjct: 59 EGVATFYNQIFRQPVGQ-NIIRYCDSIVCYVTGCNAIKKTLECILNIKIGNTTKDNKFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +P++MI +D Y + ++ +I++ + Sbjct: 118 LPTCCLGMCDKSPVIMINEDVYSHIVLSKINKILNLYR 155 >gi|303242579|ref|ZP_07329056.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] gi|302589883|gb|EFL59654.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio cellulolyticus CD2] Length = 161 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 77/158 (48%), Gaps = 4/158 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +++++S++ ++ +I +L QE+ ++ + ++ L+++ R+ +ATF Sbjct: 6 NFKMIDDILSKH--GLSETYIIAILQSIQEKYRYIPKEVFPYLSKKLNVSEARIFSVATF 63 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140 Y F L P G + +++C T C +R ++E R ++ D + E V C Sbjct: 64 YENFSLEPKG-KYVIKICDGTACHVRKSIPILERLRKELKLSDKKITTDDLMFTVETVSC 122 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP++ + + +TP++ E++ G D Sbjct: 123 LGACGLAPVITVNDKVHPAMTPDKASELLKELREGNAD 160 >gi|302342959|ref|YP_003807488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] gi|301639572|gb|ADK84894.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] Length = 168 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + E ++++ + Y A+IP+L Q G++ A + +A+ L MA V + Sbjct: 17 TPEMLTKIDQICADY--RGKPGALIPVLQACQGVVGYLPEAVQQRIADGLGMAGHEVFGV 74 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY+ F + P G R V+VC T C +RG ++ ++ + D + E V Sbjct: 75 ATFYSFFTMKPRG-RNVVRVCLGTACYVRGGKETMDRLTQHLTLNADGTTEDRRFTVEGV 133 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP+V+I +DT+ + + + +++ + Sbjct: 134 RCLGACGVAPVVVINEDTHRKIMADSVINLVERYQ 168 >gi|57234507|ref|YP_181466.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 159 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V ++ +Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+ Sbjct: 12 KVKNILDKY--AKDKGMLVAILQDIQTEFNYLPRPALETVSEGLGVPMSQVYSVATFFKA 69 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G + + VC T C +RG K+++ K+ +D S + V C GAC Sbjct: 70 FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTADMKFSLDAVNCVGAC 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P+V++ ++T E+++ +I+ Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQ 157 >gi|291546306|emb|CBL19414.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp. SR1/5] Length = 159 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 4/148 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +E+I Y R +++IP++ Q + ++ + VA + + + +ATFY F Sbjct: 11 DEIIEHY--GRKAASLIPIMQDIQAEYRYLPGELLTYVAEQIGVKEAKAYSVATFYENFS 68 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACV 145 P G + ++VC T C +R + E ++ H D + E V C GAC Sbjct: 69 FEPKG-KYIIKVCDGTACHVRKSMPVKEAMLKELGLSHKKHTTDDMMFTVETVSCLGACG 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 AP + + + + +TPE+ E+++ Sbjct: 128 LAPTLTVNDEVHPKMTPEKAVELLNELR 155 >gi|124266600|ref|YP_001020604.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Methylibium petroleiphilum PM1] gi|124259375|gb|ABM94369.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein [Methylibium petroleiphilum PM1] Length = 162 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + SE + + +++YP + QSAV+ L Q+++G VS A +A L M I V Sbjct: 1 MTLSEATKARFDREVAKYPAEQRQSAVMACLAIVQQEQGHVSADAERAIAAHLGMPPIAV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ TFY + PVG R + VC PC LR E ++ K+ +P +DG + Sbjct: 61 HEVTTFYNMYNQQPVG-RFKLNVCTNLPCQLRDGETALQHVCKKLGVEPYGSTADGVFTV 119 Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEE 167 + EC GAC +AP++++ +T +RL+E Sbjct: 120 QPSECLGACADAPVMLLNDRQMLSFMTEQRLDE 152 >gi|322419372|ref|YP_004198595.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320125759|gb|ADW13319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 173 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 3/161 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 PS E + I P + ++ L +AQ G++ + VA+++ + Sbjct: 16 PSPTRLPEALTRELESFIDSLPT--KEGHLVTALHKAQSLYGYLPMEVQQQVASLMGTSL 73 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + +FYT F + P G + + VC T C +RG EK+I+ + ++ + DG Sbjct: 74 SQVYGVVSFYTYFTMVPKG-KYPISVCNGTACFVRGSEKVIDAFKKQLCIEVGEVTRDGL 132 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S + + C GAC AP+VM+G+ T+ +TP+++++II F Sbjct: 133 FSIDVLRCVGACALAPVVMVGEKTFGGVTPDQVKDIIAEFK 173 >gi|73540323|ref|YP_294843.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] gi|72117736|gb|AAZ59999.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha JMP134] Length = 179 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 A++P+L Q+ G++ A+ V+A L+++ V + TFY F+ P G R VQV Sbjct: 31 PGALLPILHEIQDTHGYIPDTAVPVIAKALNLSRAEVHGVITFYHHFRQQPAG-RHVVQV 89 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G E L E + + +DG ++ E V C G C P VM+G+ + Sbjct: 90 CRAEACQSVGAEALAEHAKRALGCDFHETTADGAVTLEPVYCLGQCACGPAVMMGEQLHG 149 Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + +R + ++ Q +P Q Sbjct: 150 YVDAKRFDVLVRKLRADQT-AHQPANQ 175 >gi|125972949|ref|YP_001036859.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium thermocellum ATCC 27405] gi|256005705|ref|ZP_05430661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 2360] gi|281417160|ref|ZP_06248180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum JW20] gi|125713174|gb|ABN51666.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium thermocellum ATCC 27405] gi|255990336|gb|EEU00462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 2360] gi|281408562|gb|EFB38820.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum JW20] gi|316940815|gb|ADU74849.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium thermocellum DSM 1313] Length = 165 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++S + S ++A+I +L QE+ ++ + ++ L ++ R+ +ATFY F Sbjct: 14 IDNILSEHGTS--ETAIIAILQSIQEEYHYIPKEVFPYLSKKLKVSEARIFSVATFYENF 71 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGAC 144 L P G + ++VC T C +R +IE R ++ D + E V C GAC Sbjct: 72 SLEPKG-KYIIKVCDGTACHVRKSIPIIERLRKELGLSGTKPTTDDLMFTVETVSCLGAC 130 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 AP++ + Y ++TP++ E+I G D Sbjct: 131 GLAPVITVNDKVYAEMTPDKASELIKQLREGDADA 165 >gi|326201301|ref|ZP_08191173.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988869|gb|EGD49693.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 157 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 VN +++++ +S +I +L Q + ++ + VA L++ ++ +ATFY F Sbjct: 9 VNGILNKH--DNNKSHLIAVLQEIQNEYKYLPEDVLNYVAEKLEINLSKIFSVATFYENF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144 L P G + ++VC T C +R ++ R ++ + H D + E V C GAC Sbjct: 67 SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSESKHTTDDKLFTVETVSCLGAC 125 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 AP++ I Y +TP+ EII + Sbjct: 126 GLAPVITINDKVYAKMTPDSTIEIIKTLRS 155 >gi|226953549|ref|ZP_03824013.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244] gi|262373372|ref|ZP_06066651.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205] gi|294649463|ref|ZP_06726887.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus ATCC 19194] gi|226835727|gb|EEH68110.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244] gi|262313397|gb|EEY94482.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205] gi|292824633|gb|EFF83412.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus ATCC 19194] Length = 169 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + + I YP R +A + L Q + GWV A + +A +L ++ + Sbjct: 17 LTADEIHEIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + +DG + Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVDVSSVKQLLEKY 168 >gi|225175971|ref|ZP_03729963.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168559|gb|EEG77361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 155 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ + E+ S+Y R + +IP+L Q G++ A+ +A + + +V +A Sbjct: 2 EKEDMKFQEIFSQYNGEREE--LIPILQDTQAIYGYLPEQAMRAIARFMRIPQSQVYGVA 59 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TF+ QF S G + ++VC T C ++G +L+E ++ D + S E V Sbjct: 60 TFFGQFYFSRRG-KHAIKVCLGTACHVKGAGRLMEAFEREMGIGCGCITDDYSFSLERVN 118 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP+VM+G+D Y + +R++E++D ++ Sbjct: 119 CVGACAIAPVVMVGEDVYGHVESKRVKEVLDIYAK 153 >gi|254469432|ref|ZP_05082837.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp. JE062] gi|211961267|gb|EEA96462.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp. JE062] Length = 158 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S++ +I + + ++P+L Q + G+V A+ +A+ L+++ V Sbjct: 7 SQDIEKDTAAIIDVH--EHQEGPLLPILHDVQAKFGYVPEDALLQIADRLNLSRAEVHGT 64 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ P G R ++VC C G EKL E + + K DG ++ E V Sbjct: 65 MSFYHDFRTEPAG-RHVLKVCRAEACQSLGGEKLAEDIQRDLGIKWHETTPDGKVTLEPV 123 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C AP M+ + + L + ++++ Sbjct: 124 YCLGLCSCAPAAMMDGNLHGRLDEAAVLKLVEEVK 158 >gi|322420256|ref|YP_004199479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320126643|gb|ADW14203.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 180 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 5/165 (3%) Query: 20 EESAIWVNEVISRYPP----SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 E + I +PP + + +I L +AQ+ G++ VAN + V Sbjct: 15 PEKTSELAAYIDSFPPVTEWRKKRGDLIASLHKAQQLFGYLPEEVQLFVANKFRLQLSDV 74 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY+ F + P G R V VC T C ++G ++++ +++ D S Sbjct: 75 AGVVTFYSFFVVRPPG-RYTVNVCTGTACFVKGADRVLREFEHELGIASGETRGDLEFSL 133 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 + C GAC AP+VM+ Y ++TP+ ++ I+ + + Sbjct: 134 GGLRCVGACSLAPVVMVNDRVYGNVTPDMVKAIVKECQALKEGSH 178 >gi|148653493|ref|YP_001280586.1| NADH dehydrogenase subunit E [Psychrobacter sp. PRwf-1] gi|148572577|gb|ABQ94636.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter sp. PRwf-1] Length = 170 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++E I YP +R +A + L Q++ GWV+ A + +AN+LD+ + Sbjct: 18 LTAQEIEGIHEYIHHYPHAR--AASLDALKLVQKRNGWVNDAQVNAIANLLDVPVTDIEG 75 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + SPVG R + VC + C L G E+L + + + +DG + Sbjct: 76 VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEELAAELKTTLGIEFGQTTADGRFTLLP 134 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P V+I +DT+ ++P + E+++ + Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVSPSEVAELLEYY 169 >gi|297587237|ref|ZP_06945882.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516] gi|297575218|gb|EFH93937.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516] Length = 161 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 15 SFSFS-EESAIWVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 SF+F +E A V E + + ++P+L RAQ++ G++ + I +++ ILD+ Sbjct: 2 SFTFDLKEHASQVEEFREFVRSKKDIKGPLMPVLQRAQDEFGYLPKEIITMISKILDIPL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + + TFY QF L P G + +QVC T C ++G +++ E + + D Sbjct: 62 SEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S C G C AP+++I D Y + LE II ++ Sbjct: 121 FSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIISKYN 161 >gi|77919201|ref|YP_357016.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545284|gb|ABA88846.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 173 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 86/160 (53%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + ++ P + ++ +L +AQ G++ + E VA+ ++++ Sbjct: 16 PDRATLPATLYRQLADFVATLPT--KEGHLVTVLHKAQSLFGYLPKEVQEFVADHMEVSL 73 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + +FYT F + P G + + VC T C ++G +K+++ +N++ DG Sbjct: 74 AQVYGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDAFKNQLGVTVSEVTRDGK 132 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + + C GAC AP+V++G+ Y ++TP+++++II F Sbjct: 133 FSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDIIADF 172 >gi|303246232|ref|ZP_07332512.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302492295|gb|EFL52167.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 168 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ Y R + ++P+L QE+ ++ + VA L + V +ATFY F L+ Sbjct: 21 ILDHY--GRHPARLVPILQALQEEYRYLPEEVLSYVATSLRIPEANVFGVATFYAHFALT 78 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147 P G + V++C T C ++ ++E R ++ + D + E V C GAC A Sbjct: 79 PKG-KYIVRLCDGTACHVKHSIPILEALRGRLSLSEEKTTTPDMLFTVETVACLGACGLA 137 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+++I +D Y +TP+R +ID+ + Sbjct: 138 PVMVINEDVYGQMTPQRAVSLIDSIRAKE 166 >gi|317052149|ref|YP_004113265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum indicum S5] gi|316947233|gb|ADU66709.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum indicum S5] Length = 173 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 4/169 (2%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P S + + V + RY +R A+I +L AQE G++ + VA LD+ Sbjct: 7 SPGSATTDDPRIRLVERTLKRY--ARQPDALIEVLHTAQEAYGYLPEGILTHVARELDLP 64 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +V+ +ATFY F L P G + + VC T C ++G +++ + DG Sbjct: 65 ESQVMGVATFYHFFSLRPRGEHSCI-VCTGTACYVKGAGEIVSAVEKEYGITAGQTTPDG 123 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIIDAFSTGQGDT 179 LS C G C APM+ + + TPE LE++ + G+G+ Sbjct: 124 KLSLGAARCLGNCSLAPMLTLDDEVLGRETPEGTLEKLRQHIAAGRGEP 172 >gi|239905423|ref|YP_002952162.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795287|dbj|BAH74276.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 168 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ RY R + ++P+L QE+ ++ + + VA L + V +ATFY F L Sbjct: 21 ILDRY--DRHPARLVPILQALQEEYRYLPQEVLSYVATSLRIPEANVFGVATFYAHFALE 78 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147 P G + V++C T C ++ ++E R ++ + D + E V C GAC A Sbjct: 79 PKG-KYVVRLCDGTACHVKQSIPILEALRARLDLTEAKATTPDMLFTVETVACLGACGLA 137 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+++I +D Y +TPER ++IDA + Sbjct: 138 PVLVINEDVYGQMTPERAVDLIDAIRAKE 166 >gi|73748524|ref|YP_307763.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147669305|ref|YP_001214123.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|289432571|ref|YP_003462444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146270253|gb|ABQ17245.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|288946291|gb|ADC73988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 157 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V +++++Y ++ + ++ +L Q + ++ R A+E V+ L + +V +ATF+ Sbjct: 12 KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G + V VC T C +RG K+++ K+ D S + V C GAC Sbjct: 70 FSLKPKG-KHSVHVCMGTACHVRGASKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P+V++ ++T E+++ +I+ Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQ 157 >gi|118594390|ref|ZP_01551737.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181] gi|118440168|gb|EAV46795.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181] Length = 157 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + SE I + + + + A++PL+ Q+ G++ + ++++ +++ + Sbjct: 1 MNLSETQRITIEKHVETFLT--KPGALLPLMHAIQDSLGYIPEDSYPIISSAYNLSIAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 TFY F+ SP G + +QVC C G E + C+ + + DG ++ Sbjct: 59 HGFVTFYHHFRTSPSG-KNILQVCRAESCQSMGSESIENYCKKVLGVDYHETSKDGVITL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C G C +P VM+ +TPE+++ II A Sbjct: 118 EPVYCLGNCACSPSVMMNDKVIGRVTPEKIDNIIKAVK 155 >gi|150398097|ref|YP_001328564.1| formate dehydrogenase subunit gamma [Sinorhizobium medicae WSM419] gi|150029612|gb|ABR61729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium medicae WSM419] Length = 159 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + V E+ R + +IP+L Q++ G+V ++ V+A L+++ V + Sbjct: 11 TERTLAIVGEL------KRLEGPLIPILHEIQDEFGYVPEESLPVIAQELNLSRAEVYGV 64 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY F+ P G R +++C C G ++L E + + DG ++ E V Sbjct: 65 VTFYHDFREHPAG-RHVLKLCRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPV 123 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C +P M+ + + L L+ ++ Sbjct: 124 YCLGLCSCSPSAMLDGELHARLDEAVLDALVAEAR 158 >gi|160893747|ref|ZP_02074531.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50] gi|156864732|gb|EDO58163.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50] Length = 160 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +++I+ Y +IP++ Q + ++ + VA+ L++ + +ATFY Sbjct: 7 YDEADKIIAAYGTE--PRFLIPIIQDIQSEYKYLPPELLRYVADKLNITEAKAYSVATFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141 F G + ++VC T C +R ++ ++ K H D + E V C Sbjct: 65 ENFSFDAKG-KFILKVCDGTACHVRKSMDILNQLYKELGLSKEKHTTDDMMFTLETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 GAC AP++ + + +TPE++ +I G + Sbjct: 124 GACGLAPVMTVNDVVHPAMTPEKVTALIAELKEGADE 160 >gi|261416515|ref|YP_003250198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372971|gb|ACX75716.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327348|gb|ADL26549.1| NADH-quinone oxidoreductase, E subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 353 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 16/177 (9%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + E +++SRYP Q+A++ +L Q GWV R I AN+ A L + Sbjct: 57 TPEIKERCADLLSRYPVG--QAALLEVLWLVQGVFGWVPREGIRWAANVCGCAPAHALGV 114 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFYT + +P G + +Q C C ++G LI + ++ K DG + +V Sbjct: 115 ATFYTMYNHAPKG-KFLLQFCRNISCTIKGAPSLIAYVEHALNIKTGETTPDGLFTILQV 173 Query: 139 ECQGACVNAPMVMIGKDTYED-------------LTPERLEEIIDAFSTGQGDTIRP 182 EC G+C N PM+++ D D LT + ++ I+ + + + Sbjct: 174 ECLGSCGNGPMMLVNDDFATDADGDVLTMKPGTKLTTDSIDRILKWCYAHEDNIPKH 230 >gi|116254126|ref|YP_769964.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. viciae 3841] gi|115258774|emb|CAK09880.1| putative NAD-dependent formate dehydrogenase gamma subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 159 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHLLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG ++ E V C G C AP M+ + + Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTPDGGVTLEPVYCLGLCACAPAAMLDGEVHG 143 Query: 159 DLTPERLEEIIDAFST 174 + +R E++ Sbjct: 144 RVDEQRAAELVAEARR 159 >gi|320161179|ref|YP_004174403.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] gi|319995032|dbj|BAJ63803.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] Length = 205 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 6/169 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + ++ + E P + EE +++++ + ++ +L Q Q G++S Sbjct: 33 LMLKSITVPENDPIAI---EEKRAIIDQILEQ--NKHLPGGLMVILNEVQSQIGFISEPM 87 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +AN L + V + +FY+ F +P G + ++ C T C + G +LIE + + Sbjct: 88 QQYIANKLHVPVSTVHGVVSFYSFFTTTPRG-KHTIKFCMGTACYVGGTPQLIEKAKQVL 146 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 P DG ++ E C GAC AP++++ ++ + P + +++ Sbjct: 147 GIDPGETTPDGQITLELCRCVGACSQAPVIVVDEEIQGRVRPNKFPQLL 195 >gi|299771416|ref|YP_003733442.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1] gi|298701504|gb|ADI92069.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1] Length = 169 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + I YP R +A + L Q + GWV A + +A +L M+ + Sbjct: 17 LTAEEIHDIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + DG + Sbjct: 75 VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168 >gi|262195155|ref|YP_003266364.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM 14365] gi|262078502|gb|ACY14471.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM 14365] Length = 172 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 9/172 (5%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S FS E+ ++ + RYP Q V+ L AQ++ G +S A+ VVA L++ Y Sbjct: 8 SPLEFSAEARQKIDALSQRYPT--KQPVVLAALHLAQKEFGHLSDDALRVVAKTLELPYP 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFYT F+ P G + ++VC CMLRG ++E ++ K + D Sbjct: 66 HVYGVATFYTMFRRQPAG-KNVLRVCTNISCMLRGAYDVLEAFEKRLGIKVGDSSGD--F 122 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 E EC AC NAP V+ G + D+ P +++EIID T P + Sbjct: 123 HLVEEECIAACANAPAVICGTKYFLDVEPSQVDEIIDFLE----KTPHPESE 170 >gi|255318319|ref|ZP_05359554.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter radioresistens SK82] gi|262379063|ref|ZP_06072219.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter radioresistens SH164] gi|255304631|gb|EET83813.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter radioresistens SK82] gi|262298520|gb|EEY86433.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter radioresistens SH164] Length = 169 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + I YP +R +A + L Q + GWV A + +A +L ++ + Sbjct: 17 LTSEEIHEIQHHIGHYPYAR--AASLDALKCVQRRNGWVDDAQLNAIAQLLSISTADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + +DG + Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMIDGDTHGLVEVTSIQQLLEKY 168 >gi|262280143|ref|ZP_06057928.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus RUH2202] gi|262260494|gb|EEY79227.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus RUH2202] Length = 169 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + I YP R +A + L Q + GWV A + +A +L M+ + Sbjct: 17 LTAEEIHDIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + DG + Sbjct: 75 VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 168 >gi|241206611|ref|YP_002977707.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860501|gb|ACS58168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 159 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG ++ E V C G C AP VM+ + Y Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGGVTLEPVYCLGLCACAPAVMLDGEVYG 143 Query: 159 DLTPERLEEIIDAFST 174 + + E++ Sbjct: 144 RVDDQTAAELVAEARR 159 >gi|239904884|ref|YP_002951622.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein [Desulfovibrio magneticus RS-1] gi|239794747|dbj|BAH73736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein [Desulfovibrio magneticus RS-1] Length = 171 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 + + ++ +L +AQ G++ + VA+ +++ +V + +FYT F + P G + + Sbjct: 37 QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +C T C ++G +K++ + ++ DG S + + C G C AP+VM+G+ Sbjct: 96 SICMGTACFVKGADKVVNAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155 Query: 157 YEDLTPERLEEIIDAF 172 Y ++TP ++++I+ F Sbjct: 156 YGNVTPGQVKKILADF 171 >gi|77919235|ref|YP_357050.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545318|gb|ABA88880.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 172 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 85/161 (52%), Gaps = 3/161 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + ++ P + ++ +L +AQ G++ + E VA+ +D + Sbjct: 15 PDRATLPATLYQQLADFVATLPT--KEGHLVTVLHKAQSLFGYLPKEVQEFVADQMDESL 72 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + +FYT F + P G + + VC T C ++G +K+++ + ++ DG Sbjct: 73 AKVYGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDALKQQLGVTVSEVTKDGK 131 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S + + C GAC AP+V++G+ Y ++TP+++++I+ F+ Sbjct: 132 FSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDILADFA 172 >gi|77164633|ref|YP_343158.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus oceani ATCC 19707] gi|254433276|ref|ZP_05046784.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] gi|76882947|gb|ABA57628.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707] gi|207089609|gb|EDZ66880.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus oceani AFC27] Length = 154 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E ++ + YP ++ I + Q GWVS ++ +A L ++ + Sbjct: 2 LSTEEIKAIDAERAHYPTAQAVG--IEAMKIVQHHRGWVSDESLREIAEYLGLSVESLDG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 ATFY PVG + + +C + C + G E+L E + ++ DG + Sbjct: 60 AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQTELKIGLGETTQDGRFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP++++ +D + DL E++ EI+ + Sbjct: 119 SCCLGACERAPVMVVDQDLHGDLDSEKIGEILAGY 153 >gi|320353703|ref|YP_004195042.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320122205|gb|ADW17751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 171 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 ++ ++ + +IP+L QE+ ++ + VA LD+ RV +ATFY+ F L Sbjct: 23 ILEQHDNQPQR--LIPILQAVQEEYRYLPEDVLTFVAAGLDVPPARVYGVATFYSHFALE 80 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNA 147 P G + +++C T C ++ ++E ++ D + E V C GAC A Sbjct: 81 PKG-KYCIRLCDGTACHVKRSIPILEAIYKRLGLSSKRTTTEDMLFTVETVACLGACGLA 139 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 P+V+I ++ + +TPE ++I+ + Sbjct: 140 PVVVINEEVHGQMTPEAAIQLINEIEERE 168 >gi|56387325|gb|AAV86074.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 158 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 4/152 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++++Y + +I +L QE+ ++ + A ++ L M+ ++ +ATFY F Sbjct: 10 LDIILTKY--NHDACNIIAILQDTQEKYRYLPKEAFVYLSEKLGMSRAKIYSVATFYENF 67 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144 L P G + +++C T C +R +++ R +++ +D + E V C GAC Sbjct: 68 SLEPKG-KFVIKICDGTACHVRKSIPILDKLRKELNLSEAKTTTDDLIFTLETVSCLGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP + + Y +TPE+ E+++ F + Sbjct: 127 GLAPAMTVNDKVYGSMTPEKAMELLNTFKEEK 158 >gi|21672440|ref|NP_660507.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008858|sp|Q8K9Y4|NUOE_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 168 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++F+ + + + Y SR S I L Q++ GWV AI +ANIL++ Sbjct: 12 TTFTLTTFEINEIEKQKKYYENSRSVS--IEALKIVQKKRGWVCDQAIIEIANILNLNPS 69 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V +ATFY+Q PVG R ++ C + C L G EK+ + + + K + DG Sbjct: 70 EVESVATFYSQIYRQPVG-RNVIRYCDSVVCYLTGYEKIKKFLEDYLFIKIGNTTVDGRF 128 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + V C G C AP +MI +D Y L P+ + +++ + Sbjct: 129 TLLPVCCLGNCDKAPTIMINEDLYSHLNPDLIPNLLELYK 168 >gi|328543745|ref|YP_004303854.1| ATP synthase subunit E [polymorphum gilvum SL003B-26A1] gi|326413489|gb|ADZ70552.1| ATP synthase subunit E [Polymorphum gilvum SL003B-26A1] Length = 157 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 7/159 (4%) Query: 20 EESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 ++ + E V+ R+ + + ++P+L QE+ GW+ AA+ +A L++ V Sbjct: 2 QDQDARIAEQTRLVVERH--ATTEGPLLPILHEVQEEFGWLPPAALRTIAEGLNLGRAEV 59 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY F+ P G R +++C C G E++ E R ++ +DG+++ Sbjct: 60 HGVATFYHDFRTEPAG-RHRLKICRAEACQAMGGERIAERARAELGLDWHETAADGSVTL 118 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C G C AP M+ L +R I+ T Sbjct: 119 EPVYCLGLCACAPAAMVDDRLEGRLDADRFARILAEVRT 157 >gi|209551212|ref|YP_002283129.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536968|gb|ACI56903.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 159 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +++P+L Q++ G++ + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGSLLPILHEVQDEFGYIPQEAVPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG+++ E V C G C AP M+ + Y Sbjct: 84 CRAEACQSMGGDALAERVKTLLGIDFHQTTLDGSVTLEPVYCLGLCACAPSAMLDGEVYG 143 Query: 159 DLTPERLEEIIDAFST 174 + + E++ Sbjct: 144 RVDDQLAAELVAEARR 159 >gi|226939460|ref|YP_002794533.1| NADH dehydrogenase subunit E [Laribacter hongkongensis HLHK9] gi|226714386|gb|ACO73524.1| NuoE [Laribacter hongkongensis HLHK9] Length = 166 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRA------QE---QEGWVSRAAIEVVANIL 68 S E+ ++ +++YP + +SAV+ L A Q +E ++ +E VA+ L Sbjct: 2 LSPEALQLIDREVAKYPADQARSAVMGALRIALTERREQGRTPEERCLTTELVEFVADYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + + E+ATFY + + PVG + + VC PC LRG + + K+ Sbjct: 62 GIPPVAAYEVATFYNMYDMKPVG-KYKLTVCTNLPCALRGGVDTADYLQKKLGIALGETT 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172 +DG + E EC GAC +AP++++ +TPE +++ + F Sbjct: 121 ADGKFTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDQKLAEF 165 >gi|169824853|ref|YP_001692464.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|302379620|ref|ZP_07268105.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna ACS-171-V-Col3] gi|303234495|ref|ZP_07321132.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna BVS033A4] gi|167831658|dbj|BAG08574.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|302312527|gb|EFK94523.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna ACS-171-V-Col3] gi|302494329|gb|EFL54098.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia magna BVS033A4] Length = 161 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 SF+F + E + S+ + ++P+L AQ++ G++ + I ++ ILD+ Sbjct: 2 SFTFDLKEHAEQVEEFREFVRSKKDIKGPLMPVLQHAQDEFGYLPKEIITTISKILDIPL 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + + TFY QF L P G + +QVC T C ++G +++ E + + D Sbjct: 62 SEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQK 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S C G C AP+++I D Y + LE I+ ++ Sbjct: 121 FSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIVSKYN 161 >gi|218441076|ref|YP_002379405.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. PCC 7424] gi|218173804|gb|ACK72537.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7424] Length = 166 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + +A L + RV +ATFY F L P G Sbjct: 30 NQYRQDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSRVYGVATFYHLFSLKPSGEHT 89 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +K++ ++ K + DG +S C GAC AP V+ Sbjct: 90 CV-VCLGTACYVKGGDKILSDLEKQLGIKVGETSPDGKVSLVSARCIGACGIAPAVVFDG 148 Query: 155 DTYEDLTPERLEEIID 170 + + E I+ Sbjct: 149 AVAGKQDSQSVIEKIE 164 >gi|325960238|ref|YP_004291704.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium sp. AL-21] gi|325331670|gb|ADZ10732.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium sp. AL-21] Length = 158 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +NE++S Y ++ S +IPLL Q G++S +I+ V+ ++ + +ATFYTQF Sbjct: 5 LNEILSTYEGTK--SELIPLLQDVQANLGYLSEESIKDVSKFTGVSESEIYGVATFYTQF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +PVG + + VC T C ++G ++IE + K D S E V C G C Sbjct: 63 RFTPVGKKH-IMVCKGTACHVKGAPQIIEGIERHLGIKEGEVTFDMEYSLESVGCLGCCA 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168 AP MI D ++T + +++I Sbjct: 122 LAPCAMINDDVESNMTLKDVKKI 144 >gi|118581918|ref|YP_903168.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] gi|118504628|gb|ABL01111.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379] Length = 172 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 85/160 (53%), Gaps = 3/160 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + +++ ++ P + ++ +L +AQ+ G++ R + VA+++ ++ Sbjct: 16 PGRSTLPATLCQELDDFVADLPT--REGHLVTVLHKAQQLFGYLPREVQQYVADLMGVSL 73 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +A+FYT F + P G + + +C T C ++ K+++ ++ + + DG Sbjct: 74 AKVYGVASFYTFFSMVPKG-KYPISICMGTACYVKQAHKIVDAFKDILGVEIGEVTGDGK 132 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 S + + C GAC AP++ +G+ Y +TP++++EII + Sbjct: 133 FSIDVLRCVGACALAPILTVGEKVYAHVTPDQVKEIIAEY 172 >gi|126463499|ref|YP_001044613.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC 17029] gi|126105163|gb|ABN77841.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17029] Length = 157 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V++++ + + ++P+L QE G V ++ +A L+++ V + Sbjct: 6 AEVHARVDDILDAHEG--LEGPLLPILNAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G ++L E + ++ +DG ++ E V Sbjct: 64 SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C P ++ + RLE I++ Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157 >gi|118579071|ref|YP_900321.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118580050|ref|YP_901300.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118581590|ref|YP_902840.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM 2379] gi|118501781|gb|ABK98263.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM 2379] gi|118502760|gb|ABK99242.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM 2379] gi|118504300|gb|ABL00783.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379] Length = 154 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 1/151 (0%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++ + YP S V+P L +++ + + +AN L + ++V E T+Y Sbjct: 5 EEKFAQLRATYPKELNSSLVMPFLRIMLDEKKSLGESDAVFIANYLGLPAMQVKEALTWY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 T F PVGT ++VC C L G E++I+ K+ KP +DG + VEC Sbjct: 65 TMFYRHPVGT-HVIKVCRNIACSLMGAERIIDHLSQKLGIKPGETTADGRFTLLLVECLA 123 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +C AP++ I +E LT ++++I+ S Sbjct: 124 SCGTAPVMQIDDTYHEQLTEAKIDQILKGLS 154 >gi|257065151|ref|YP_003144823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia heliotrinireducens DSM 20476] gi|256792804|gb|ACV23474.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia heliotrinireducens DSM 20476] Length = 162 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 3/157 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ V E+I YP + + + + Q ++ + +A L ++ +A Sbjct: 4 KDQTSKVKEIIEAYPADQRFA--LAAMQDMQHAFNYIPEEGLAALAEYLGCPQAQLYSMA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY L+P G V++C T C LRG L + + +P DG S E V Sbjct: 62 TFYKALSLTPKGD-HIVKICNGTACHLRGSMNLATELKRDLGVEPGETTEDGKFSVELVN 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C G+C AP++++ + L E++ II+ ++ + Sbjct: 121 CLGSCALAPVMVVDGTYHNKLRVEQIPGIIERYAAEE 157 >gi|33595782|ref|NP_883425.1| formate dehydrogenase subunit gamma [Bordetella parapertussis 12822] gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella parapertussis] Length = 163 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P G R ++ Sbjct: 25 QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLE 83 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C G + L R ++ + +DG+ + E V C G C +P VMI + Sbjct: 84 ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 143 Query: 158 EDLTPERLEEIIDA 171 +TP +L+ ++ Sbjct: 144 ARVTPAKLDRLLAR 157 >gi|114567344|ref|YP_754498.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338279|gb|ABI69127.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+IS Y +I Q++ ++ A+ A + D+ + +ATFY+ + Sbjct: 5 REIISAYKE--VPGGIIEAYHAVQKEYSYIPEDAVVYAAQVFDIPEAKAYGVATFYSYLK 62 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + P G + +++C + PC + G +K++ ++ K DG + E EC G C Sbjct: 63 VGPRG-KNVIRICESAPCHIAGADKVVAALEKELGIKMGETTPDGKFTLEFAECVGQCQA 121 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 P++ I Y D+T +++ I+ + Sbjct: 122 TPVITINSQPYGDVTADKIAAILTEYK 148 >gi|308271654|emb|CBX28262.1| hypothetical protein N47_G35860 [uncultured Desulfobacterium sp.] Length = 162 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%) Query: 26 VNEVISR-YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ +I Y + +I +L Q+ ++ AAI +A + + + +ATFY+ Sbjct: 17 LDRIIEEDYNNDKE--NLIMILQGIQKVYNYLPGAAISYLAVKIGIPLSHIYGVATFYST 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G R + +C T C +RG E++ E N ++ D + E V C G C Sbjct: 75 FSLKPRG-RNIISICLGTACHVRGGERIRESLTNTLNITDGQTTEDKRFTLESVRCIGCC 133 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 P++ I +D + +TP+++ I+ + Sbjct: 134 SLGPVIKINEDMHGRITPDKVNPILSHY 161 >gi|33600309|ref|NP_887869.1| formate dehydrogenase subunit gamma [Bordetella bronchiseptica RB50] gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella bronchiseptica RB50] Length = 185 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A++P+L Q++ G++ A++ +A L ++ V + TFY F+ P G R ++ Sbjct: 47 QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLE 105 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C G + L R ++ + +DG+ + E V C G C +P VMI + Sbjct: 106 ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 165 Query: 158 EDLTPERLEEIIDA 171 +TP +L+ ++ Sbjct: 166 ARVTPAKLDRLLAR 179 >gi|260892246|ref|YP_003238343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] gi|260864387|gb|ACX51493.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii KC4] Length = 158 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 E+ E++++Y + + +L Q + G++ A+EVVA + ++ + +A+ Sbjct: 3 EAVTVTREIVAKYKG--REGVLTHILQDIQGRFGYLPPEAMEVVAEEMGVSLAELYGMAS 60 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY +F +P G + ++VC T C +RG E+++ ++ K + D + E V C Sbjct: 61 FYARFYFTPRG-KTVIKVCRGTACHVRGSERVLAKFSEELGLKEGETSPDLKFTLEAVNC 119 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 G C AP+VMI + + P + ++ G+ Sbjct: 120 VGCCALAPVVMINEKVFTANDPGK---LLATLRQGE 152 >gi|206602056|gb|EDZ38538.1| Putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum sp. Group II '5-way CG'] Length = 168 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + + E+ + S + AV+ +L + QE+ G+V A+E V IL++ ++ + Sbjct: 8 EVTYEDIEEICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF P G + ++VC T C +RG L++ + ++H +P D + E V Sbjct: 66 TFYSQFYQEPRG-KFVLKVCVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C G+C APM M+ Y L+ +++ +I F P Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQFEEEAEKEEEP 167 >gi|325291005|ref|YP_004267186.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] gi|324966406|gb|ADY57185.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] Length = 154 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 5/152 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYT 83 V V+ ++ + +I +++ Q+ G ++ + +E VA L+M +V + TFY Sbjct: 4 VKGVLEKFGTGKE--NLIQIMLELQQLSGNNYLPQEWVEEVAKALEMPMSKVYGVMTFYA 61 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F G + ++VC + PC + G E ++E+ + KP DG + E C GA Sbjct: 62 MFDTEKRG-KNLIEVCKSGPCHVAGAENVMELLEEALRIKPGETTDDGLFTLEYSACFGA 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C AP + IG++ Y +LT +L+EII+++ G Sbjct: 121 CDIAPAIKIGENVYGNLTEAKLKEIINSYKEG 152 >gi|114566556|ref|YP_753710.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337491|gb|ABI68339.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++IS+Y +I Q + ++ AI V A + + + +ATFY+ + Sbjct: 5 EDIISKYQD--LPGGIIEAYHALQREYSYIPEDAIRVAAEVFGIPTAKAWGVATFYSYLK 62 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + G + +++C + PC + G ++I ++ K DG + E EC G C Sbjct: 63 VGKRG-KNVIRICESAPCHVAGAAEVIAALEKELGIKMGETTPDGKFTLELCECVGQCQA 121 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 P++ + Y D+TPE++ ++ + Sbjct: 122 TPVITVNSKPYGDMTPEKVSGVLAEYR 148 >gi|154505521|ref|ZP_02042259.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149] gi|153794179|gb|EDN76599.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149] Length = 164 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 +Q + + +E+++ + Q ++IP++ Q + ++ + VA + + Sbjct: 2 YQKEGYMLDQSYYDKADEIVASHGA--YQESLIPIIQDIQSEYRYLPPELLSYVAEKIGI 59 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNS 129 + + +ATFY F P G + ++VC T C +R ++E +++ Sbjct: 60 SEAKAYSVATFYENFSFEPKG-KYVIKVCNGTACHVRKSIPILERLYSELGISGEKNTTD 118 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D + E V C GAC AP++ + Y +TP+ E+I Sbjct: 119 DMLFTVETVSCLGACGLAPVLTVNDTVYPKMTPDAAAELIHELR 162 >gi|188585337|ref|YP_001916882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350024|gb|ACB84294.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 186 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 83/150 (55%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E+I ++ + +IPLL QE+EG++SR +E +A ++++ +++ + +FY Sbjct: 26 KEELRELIRKH--RKDSGGLIPLLQTVQEREGYLSRKRLESIAREMNLSLAKIMGVVSFY 83 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 +QF + P G + ++VC T C ++G +++E + ++ + D S E V C G Sbjct: 84 SQFHIQPKG-KNIIRVCMGTACHVKGAGQVMEKFQRELSIETGQTTEDREFSLEAVSCIG 142 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP++ I +T+ +T + +I+ + Sbjct: 143 ACGLAPVLTINHNTHGKVTTSDVNHLINRY 172 >gi|310778493|ref|YP_003966826.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309747816|gb|ADO82478.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 159 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 +I +L +AQ+ G++ E + + + + + TFY+ F +P G + Sbjct: 25 KDGELISVLHKAQDMFGYLPVEVQEFIGEKMGIPISEIYGVITFYSFFTTTPKGE-HPIS 83 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C + G E ++ ++ K +DG S + + C GAC AP++ IG TY Sbjct: 84 VCMGTACYVNGSETILNELTRELGVKVGETTNDGKFSIDVLRCIGACGMAPIIKIGNKTY 143 Query: 158 EDLTPERLEEIIDAF 172 + E+++ I+ + Sbjct: 144 GRVEAEQVKHILKEY 158 >gi|254282424|ref|ZP_04957392.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B] gi|219678627|gb|EED34976.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B] Length = 167 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAV-IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + S+ ++ I+ P +SAV I L Q GWVS ++ +A L+M+ + Sbjct: 11 ALSDSEIAAIDAEIAHVPY---RSAVAIDALKIVQAHRGWVSDESLRAIARHLEMSAEEL 67 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY PVG R + +C + C ++GC+K+ + +D + Sbjct: 68 DGVATFYNLIFRQPVGDR-VILLCNSVTCWIKGCDKVQAAITENLGIGLGETTADNAFTL 126 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 V C GAC AP++M+G D ++DL P +E+ + Sbjct: 127 LPVTCLGACDRAPVMMVGDDLHQDLDPAEIEKAL 160 >gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E subunit [Deinococcus geothermalis DSM 11300] gi|94555301|gb|ABF45215.1| NADH dehydrogenase subunit E [Deinococcus geothermalis DSM 11300] Length = 203 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 16 FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 ++ + + ++ SRYP P +SA++PLL Q+ EG+VS + +A + Sbjct: 1 MTYFADKQPLLADIFSRYPATPQGRRSALMPLLREVQDAEGFVSEVRMAEIAELCGTTAT 60 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY+ + P G R H+QVC T C L G ++L + +++ P DG Sbjct: 61 EVRSVMSFYSTYHTLPTG-RYHLQVCSTLMCALAGSDELWDYLVSELDVVPGEVTPDGRF 119 Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRP 182 S ++VEC G+C AP+V + + YE +T + + ++ A DT P Sbjct: 120 SVQKVECLGSCGTAPVVQLNDEGYYERVTRTKCDRLLAALRA---DTPPP 166 >gi|15679544|ref|NP_276661.1| NADH dehydrogenase subunit E [Methanothermobacter thermautotrophicus str. Delta H] gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, subunit A [Methanothermobacter thermautotrophicus str. Delta H] Length = 149 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + + Y + +S +IP+L Q+ G++ A+E VA+ ++ + +ATFY Sbjct: 3 EELKRIFAGY--TGHKSEIIPILQDIQDAYGYLPEDALEEVASFTGVSRAHLYGVATFYA 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 QF+ P G + + VC T C + G E++++ + + D S E V C G Sbjct: 61 QFRFKPRGRKH-IMVCTGTACHVSGAEQVLDALERHLGIEEGDVTDDMEYSLESVGCIGC 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168 C AP M+ + + P R+ +I Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVGKI 144 >gi|114567217|ref|YP_754371.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338152|gb|ABI69000.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 166 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE+ ++IS +P + +I ++ ++ R+A+E+ A + + + +V +A Sbjct: 7 EENIEGFRKIISGFPGEKR--YIIAIMHELSRCYRYLPRSALELTAEYVGVPFSQVYSMA 64 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L P G R +++VC T C ++G L++ + P +D S E V Sbjct: 65 TFYRAFSLQPRG-RFNIKVCDGTTCHIKGSNILLDEIHKNLGIGPGETTADREFSLETVN 123 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C GAC AP +++ + Y + L+EII + G Sbjct: 124 CIGACAIAPALLVNERVYPRVNAAALKEIIKEYRGG 159 >gi|126656035|ref|ZP_01727419.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. CCY0110] gi|126622315|gb|EAZ93021.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. CCY0110] Length = 171 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 1/140 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ +E VA+ L + RV +ATFY F L P G Sbjct: 31 NHYRQDALIEILHKAQEAFGYLEPDILEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHT 90 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +K++ + ++ K +D +S C GAC AP ++ Sbjct: 91 CV-VCLGTACYVKGSDKVLTALQQELGIKSGETTTDKQISLLSARCLGACGIAPAIVFDG 149 Query: 155 DTYEDLTPERLEEIIDAFST 174 + PE E I + T Sbjct: 150 EVAGKQMPENALEKIKTWQT 169 >gi|268323920|emb|CBH37508.1| putative Fe-only hydrogenase [uncultured archaeon] Length = 157 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+E+I+ + ++A++ L Q G++++ AI + + LD+ + + + TFY Sbjct: 7 KADVDEIIN--DIGKSEAALLQCLEAVQRDVGYITQDAITYLRDELDVPSVEIYGVMTFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 G + ++VC + PC L G + +IE N++ K D + E V C G Sbjct: 65 GMLTAEQQG-KYVIRVCNSLPCYLNGSKMIIETLENELGIKSGETAEDANFTLETVACLG 123 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C NAP ++I ++ Y +LT E+++EII A Sbjct: 124 LCDNAPAMIINREIYGNLTEEKVKEIIKA 152 >gi|293607183|ref|ZP_06689525.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter piechaudii ATCC 43553] gi|292814517|gb|EFF73656.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter piechaudii ATCC 43553] Length = 185 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +++R ++P+L Q + G + A++ +A L+++ V + TF Sbjct: 33 TIAATARIVARLKD--LPGPLLPVLHEVQHELGCIPAEAVQTIAEALNLSRAEVHGVITF 90 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P R V+VC C G ++L R ++ +DG + E V C Sbjct: 91 YPHFRSEPA-ARHTVEVCRAESCQAMGADQLAAHARAQLGCDFHASTADGNFTLEPVYCL 149 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170 G C +P VMI + +TP +L+ ++ Sbjct: 150 GLCAQSPAVMIDGQPHARVTPAKLDRLLA 178 >gi|320161183|ref|YP_004174407.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] gi|319995036|dbj|BAJ63807.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1] Length = 159 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + + +IP+L Q G++ +E VA +L + +V +ATFY + +G R Sbjct: 23 GKTREELIPILQEINRQYGFIPSQGLEEVARLLQIPKSQVFSVATFYHMLNVKEMG-RHI 81 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + C + PC + G ++ + ++ D S V C G C P+++I +D Sbjct: 82 ILFCESAPCHVVGGREVWRRLKQELKIDAGETTPDKKWSLVTVSCLGVCGVGPVIVIDED 141 Query: 156 TYEDLTPERLEEIIDAFS 173 Y ++TPE + +I+ ++ Sbjct: 142 MYGNVTPEMIPDILARYN 159 >gi|150018924|ref|YP_001311178.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium beijerinckii NCIMB 8052] gi|149905389|gb|ABR36222.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium beijerinckii NCIMB 8052] Length = 164 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 19 SEESAIWVNEVI--SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ +++++ + Y ++ +I ++ Q++ ++ A+ +A L ++ +V Sbjct: 5 NQKEIKKLDDILISNNYDKTQ----IITIMQEIQKEYRYLPEEALCYIAKELKISEAKVY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSW 135 +ATFY F L P G + +++C T C +R + ++ ++++ D + Sbjct: 61 GVATFYENFSLEPKG-KYVIRICDGTACHVRKSDPILSEFKSELGLSEKKLTTDDMHFTV 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E V C GAC AP+ + Y +TPE+ +++ Sbjct: 120 ETVSCLGACGLAPVCTVNDVVYPSMTPEKARKLVKQLKE 158 >gi|71892263|ref|YP_277997.1| NADH dehydrogenase subunit E [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796369|gb|AAZ41120.1| NADH dehydrogenase I chain E [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 173 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F S+E + E + Y R S I L Q+ GWV AI ++A IL ++ + Sbjct: 19 FQLSQEECNAIQEECTHYEDMRAVS--IEALKIIQKNHGWVPDEAIILIAKILCISAADL 76 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY Q PVG R ++ C + C L GCEK+ ++ SD + Sbjct: 77 EGVATFYNQIFRQPVG-RHIIRYCDSAVCYLVGCEKIKNTLTYLLNITVGSTTSDNRFTL 135 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C AP++MI KD Y + PE + +++ + Sbjct: 136 LPTCCLGICDKAPVIMIDKDIYPYIVPETITKLLGQY 172 >gi|194288742|ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus taiwanensis LMG 19424] gi|193222577|emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus taiwanensis LMG 19424] Length = 181 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 1/146 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 A++P+L Q+ +G++ A+ V+A L+++ V + TFY F+ P G R Sbjct: 31 QHMPGALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHV 89 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 VQVC C G L E + + ++DG ++ E V C G C P VM+G+ Sbjct: 90 VQVCRAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQ 149 Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIR 181 + + R + ++ Sbjct: 150 LHGYVDAARFDALVRTLRARSTAAPA 175 >gi|223984600|ref|ZP_03634727.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM 12042] gi|223963447|gb|EEF67832.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM 12042] Length = 164 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E+S ++ ++ R+ ++ L Q++ G++ A+E +A ++ V Sbjct: 3 KLNEQSVQVIDRIVDRHRGRPGPVKLM--LHDVQKELGYIPFEAMEKIAAASGVSAAEVY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFYTQF P G + + VC T C ++G L++ + K ++DG S + Sbjct: 61 GVVTFYTQFTTEPKG-KHVINVCMGTACYVKGSADLLQRICDLTGTKVNQTSADGLFSLD 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLT-----PERLEEIID 170 C GAC AP+ ++ Y + T +R++ II Sbjct: 120 ATRCLGACGLAPVAILDDQVYGNATSSTALEDRIKAIIK 158 >gi|126665579|ref|ZP_01736561.1| ATP synthase subunit E [Marinobacter sp. ELB17] gi|126630207|gb|EBA00823.1| ATP synthase subunit E [Marinobacter sp. ELB17] Length = 178 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + +S E + + I+ A++P+L Q++ G+V A+ ++A +L Sbjct: 17 PVAGDWSPE---IIRQEIAA--LQHKPGALLPILHAIQDRVGYVPEDAVPIIAEMLQQTR 71 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + + +FY F+ P G+ ++VC C RG L + ++ +D Sbjct: 72 ADIHGVISFYHHFRTHPSGS-NLLEVCRAEACQARGGRALERHVQERLSVGYHDTTADNE 130 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + V C G C P + + D +TP++ ++++DA +T Sbjct: 131 FTLVPVYCLGNCACGPSIRVNNDIIGRVTPQKFDQLVDALTT 172 >gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni CNB-2] Length = 714 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M +A+ Q S+ S E + ++R+ + ++ LL Q+ G++ RAA Sbjct: 1 MPHHPIAQP--QESAPLLSPEQQDALTHCLARF--GQEPGGLLELLHSLQDALGFIPRAA 56 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A L+++ V + ++Y + P G R +Q+C C RG + L + + Sbjct: 57 VPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQETL 115 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179 + ++DG+++ E V C G C +P VM+ + + + +T +RL+ +++ + +T Sbjct: 116 GCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 175 >gi|319789710|ref|YP_004151343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio ammonificans HB-1] gi|317114212|gb|ADU96702.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio ammonificans HB-1] Length = 160 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 20 EESAIWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 EE V E++S RYP +S +P L A++ + + ++A+ L++ + V E Sbjct: 4 EEFREAVKELVSSGRYPS--KKSCTLPALWIAEKNFPRIDHEIMRIIASELEIPLVEVEE 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 A FY F P G + ++VC CML G E+++E + P DG + EE Sbjct: 62 AAEFYAMFHTKPKG-KYVIRVCTNLSCMLNGAEEIVEELSRLLGISPGETTPDGLFTLEE 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 EC G C AP + + ++ + ++T E+L I++ F Sbjct: 121 YECMGLCDGAPALTVNEERFLNVTKEQLPAILEKF 155 >gi|218244990|ref|YP_002370361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8801] gi|218165468|gb|ACK64205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8801] Length = 179 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ +E +A L + RV +ATFY F L P G + Sbjct: 36 NHYRQDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPSGEHS 95 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC T C ++G +K++ + ++ K D + C GAC AP V+ Sbjct: 96 CI-VCMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDG 154 Query: 155 DTYEDLTPE 163 + + PE Sbjct: 155 EVAGKVEPE 163 >gi|307153310|ref|YP_003888694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7822] gi|306983538|gb|ADN15419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7822] Length = 179 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + +A L + +V +ATFY F L P G Sbjct: 39 NQYRQDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSQVYGVATFYHLFSLKPSGEHT 98 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +K++ ++ K ++DG +S C GAC AP V+ Sbjct: 99 CV-VCLGTACYVKGGDKILSELEKQLGVKVGETSADGKVSLVSARCIGACGIAPAVVFDG 157 Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176 E + + I + + + Sbjct: 158 AVAGKQDLEAVSQKIKTWQSPE 179 >gi|307297601|ref|ZP_07577407.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916861|gb|EFN47243.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 165 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 42 VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +I L Q+ G ++ A EV+ + R+ E+ TFYT F G + V+VC Sbjct: 28 LINTLHAIQDHYGNFIPIEAAEVLKELTGTPLSRIYEVLTFYTMFSTHKRG-KYVVRVCK 86 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 + PC + G + +I+ +N + DG + EE C G C +P++MI + Y +L Sbjct: 87 SLPCHVTGGQAVIDSLKNTLEIGFGETTEDGLFTLEETSCLGLCGVSPVMMINDEAYGNL 146 Query: 161 TPERLEEII 169 TP+R+ EII Sbjct: 147 TPKRVSEII 155 >gi|197117836|ref|YP_002138263.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087196|gb|ACH38467.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 152 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++ +I ++ QS++I +L+ Q + W+ + A++ V LD+ R+ I TFY Sbjct: 7 KIDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKA 64 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P G R + VC T C +RG +++++ + I K ++D S E V C G C Sbjct: 65 FSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDADLKFSLETVNCLGCC 123 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172 P+++I + + ++ P + E++ + Sbjct: 124 ALGPVMVIDGEYHGNVAPAQSAEVLKNY 151 >gi|300087355|ref|YP_003757877.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527088|gb|ADJ25556.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 166 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 6/140 (4%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EESA + SR +SA+IPLL Q++ G++ A+ A L ++ V +A Sbjct: 9 EESATRIAA-----GFSRDRSALIPLLQALQQEFGYLPPEALSAAAERLKLSESAVYGVA 63 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FYTQF+ P G R ++VC T C + G EK+++ R + +P ++DG S E V Sbjct: 64 SFYTQFRFQPSG-RHIIKVCRGTACHVGGGEKILDELRRGLDVEPGGTSADGEYSLETVA 122 Query: 140 CQGACVNAPMVMIGKDTYED 159 C GAC AP+V++ ++ Sbjct: 123 CVGACALAPVVLVNEEIIGR 142 >gi|257058014|ref|YP_003135902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8802] gi|256588180|gb|ACU99066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 8802] Length = 179 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 1/129 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ +E +A L + RV +ATFY F L P G + Sbjct: 36 NHYRQDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPNGEHS 95 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC T C ++G +K++ + ++ K D + C GAC AP V+ Sbjct: 96 CI-VCMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDG 154 Query: 155 DTYEDLTPE 163 + + PE Sbjct: 155 EVAGKVEPE 163 >gi|114328596|ref|YP_745753.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Granulibacter bethesdensis CGDNIH1] gi|114316770|gb|ABI62830.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Granulibacter bethesdensis CGDNIH1] Length = 159 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +FS E A +I + + A++P+L Q + G+V + ++A+ L+++ V Sbjct: 9 AFSAERAAR---IIDTHRD--QEGAMLPILHDLQAEFGYVPEEVVPMLADALNVSRAEVH 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY F+ P G R +++C C G + L + R K+ +G+++ E Sbjct: 64 GVISFYHDFKNHPPG-RHVLKLCRAEACQAMGADTLADHVREKLRVDWHGTTVNGSVTLE 122 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C AP M+ + + L + ++ ++++ Sbjct: 123 PVFCLGLCACAPAAMLDNELHGRLDQDHVDTLLES 157 >gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] gi|85723788|gb|ABC78731.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] Length = 150 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++++I ++ SA+I +L+ QE+ W+ + A+E V+ L + V ATFY Sbjct: 4 ERIDQIIEKH--QGASSALIQILLDIQEENHWLPKEALERVSEKLQIPITTVRHAATFYK 61 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G R V VC T C +RG ++++ + KP + D S E V C G Sbjct: 62 VFSTVPKG-RHQVHVCLGTACHVRGATRVLDTVQESTGIKPGETDLDLKFSLETVNCLGC 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C P++ I Y TP + +++ + Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149 >gi|197301315|ref|ZP_03166400.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC 29176] gi|197299633|gb|EDY34148.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC 29176] Length = 158 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 4/160 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+IS++ +++IP++ Q + ++ + VA L + + Sbjct: 2 LDQTYYKKADEIISQH--GLEPASLIPIIQDIQSEYRYLPPELLRYVAKKLGINEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R ++E +++ + D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSIPILERLYSELGLSEEKATTDDMLFTLE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 V C GAC AP++ + Y +TP+ E+I + Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPGMTPDAAAELIHELRGAE 158 >gi|117620389|ref|YP_856315.1| NADH dehydrogenase subunit E [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561796|gb|ABK38744.1| NADH-quinone oxidoreductase chain e [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S+ + Y R +A I L Q+ GWV AI +A L + V Sbjct: 28 LSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEG 85 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY+Q PVG R ++VC + C + G E+L+ + + P ++DG + Sbjct: 86 VATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLLAGLKEVMDLAPGQTSADGRFTLLP 144 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C G C P +MI DTY L L + ++A+ Sbjct: 145 VCCLGNCDKGPALMIDDDTYGGLDAVSLLKTLEAY 179 >gi|170076826|ref|YP_001733464.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus sp. PCC 7002] gi|169884495|gb|ACA98208.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus sp. PCC 7002] Length = 163 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G Sbjct: 23 NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHT 82 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G ++L++ +H KP D +S C GAC AP V+ Sbjct: 83 CV-VCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 141 Query: 155 DTYEDLTPERLEEIIDAFSTG 175 + +++ + S G Sbjct: 142 EVCGKQNADQVMARLRQLSEG 162 >gi|317404655|gb|EFV85051.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter xylosoxidans C54] Length = 185 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 +++R ++P+L Q + G + A++ +A L+++ V + TFY F+ Sbjct: 39 RILARLKD--QPGPLLPVLHAVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRS 96 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R ++VC C G E+L R + DG + E V C G C + Sbjct: 97 EPAG-RHTLEVCRAESCQAMGGEQLAAHARQALGCDFHASTRDGDFTLEPVYCLGLCAQS 155 Query: 148 PMVMIGKDTYEDLTPERLEEII 169 P VM+ + +TP +L+ ++ Sbjct: 156 PAVMLDGQPHARVTPAKLDRLL 177 >gi|207723877|ref|YP_002254275.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2] gi|207742739|ref|YP_002259131.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum IPO1609] gi|206589082|emb|CAQ36044.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2] gi|206594133|emb|CAQ61060.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum IPO1609] Length = 141 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 + L AQ ++GWVS ++ VA L+M + V E+ATFY + PVG R + VC Sbjct: 1 MAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLSVCTNL 59 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLT 161 PC L G E+ + + K+ +DG + +E EC GAC +AP++++ ++ Sbjct: 60 PCALSGGERAADYLKQKLGIGFNETTADGNFTLKEGECMGACGDAPVMIVNNTHMCSFMS 119 Query: 162 PERLEEIIDAFST 174 E+L+ +I Sbjct: 120 NEKLDALIADLQA 132 >gi|209525023|ref|ZP_03273567.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima CS-328] gi|209494432|gb|EDZ94743.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima CS-328] Length = 178 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 1/139 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G Sbjct: 37 SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLKLPLSQVYGVATFYHLFSLKPSGAHT 96 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +++ K K DG +S C GAC AP + Sbjct: 97 CV-VCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155 Query: 155 DTYEDLTPERLEEIIDAFS 173 TPE ++ + Sbjct: 156 KVAGQQTPEMAVARLEQWQ 174 >gi|262376774|ref|ZP_06070002.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145] gi|262308484|gb|EEY89619.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145] Length = 169 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + + + YP R +A + L Q + GWV A + +A +L M+ + Sbjct: 17 LTADEIHDIEHHMGHYPYPR--AACLDALKCVQRRNGWVDDAQMNAIAQMLSMSVADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + +DG + Sbjct: 75 VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +MI +DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168 >gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 114 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA++L + +IRV E+A FYT + L PVG + +Q+C TTPC L E+++ + K+ Sbjct: 1 MRYVADMLHIPHIRVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 D + +EVEC GACVNAP+V I D YE+LTPE++E II S Sbjct: 60 GINIGETTKDNLFTLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 112 >gi|225175129|ref|ZP_03729125.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225169305|gb|EEG78103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 171 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE V+E+++ +R +IP+L QE+ G++ R A+E VA+ + MA + V +A Sbjct: 9 EEILNSVDEILTSSEINRR--NLIPILQSIQERLGYLPRPALEKVADAMGMAAVDVYGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY QF+ P G ++VC T C + G + ++ +++ D E V Sbjct: 67 TFYNQFRFHPPGE-HQIKVCMGTACYIVGGQIAMDSFARRLNISEGETTPDRKYGLERVA 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C G C AP+V++ + +TP R++ I+ + G+ +PG Sbjct: 126 CVGCCTMAPVVVVDEQMEGSVTPTRVDGILLSLEA-NGNGEKPG 168 >gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] gi|85723969|gb|ABC78912.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB] Length = 150 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++++I ++ SA+I +L+ QE+ W+ + A++ V+ L + V ATFY Sbjct: 4 ERIDQIIEKH--HGASSALIQILLDIQEENHWLPKEALDRVSEKLQVPLTTVRHAATFYK 61 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G R V VC T C +RG ++++ KP + D S E V C G Sbjct: 62 VFSTVPKG-RHQVHVCLGTACHVRGANRVLDTVEEMTGIKPGETDLDLKFSLETVNCLGC 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C P++ I Y TP + +++ + Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149 >gi|301060220|ref|ZP_07201087.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300445732|gb|EFK09630.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 195 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 2/151 (1%) Query: 20 EESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + A + ++ R + + +IP+L QE+ ++S A+++VA+ L++A V + Sbjct: 25 AQEAAMLEDIEGRLREFEKERKNLIPMLQMIQERHAYLSADALQMVADKLELALCEVYGV 84 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY QF+ P G + H++VC T C +RG + ++E K+ D S E V Sbjct: 85 ATFYNQFRFHPPG-KHHMKVCLGTACHVRGGDIILENFERKLGIGHGETTPDREFSIERV 143 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G C AP+V++ + + + P ++E +I Sbjct: 144 ACVGCCALAPVVIVDETAHGHVAPSKVEGLI 174 >gi|297618251|ref|YP_003703410.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] gi|297146088|gb|ADI02845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] Length = 180 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 20 EESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 EE+ + +I +YP + ++P++ Q++ ++ + A+E+ A + V Sbjct: 16 EETREGIRGDVQPIIDKYPAEKR--YILPIMQDIQKRFNYLPKEALEIAAAYVGAPVSLV 73 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY F L P G R H ++C T C ++ + +++ I +P DG S Sbjct: 74 YSMATFYKAFSLVPRG-RVHFRMCDGTACHIKSSQVILDEIHKCIGIRPGETTPDGQFSL 132 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E V C GAC AP+++ + + +TP + EII + Sbjct: 133 ETVNCLGACALAPVLVANQKVHPKVTPAAMREIIKQY 169 >gi|327188942|gb|EGE56134.1| formate dehydrogenase subunit gamma [Rhizobium etli CNPAF512] Length = 182 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 48 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 106 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG+++ E V C G C AP M+ + Y Sbjct: 107 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 166 Query: 159 DLTPERLEEIIDAFST 174 + + E++ Sbjct: 167 RVDDQLATELVAEARR 182 >gi|296132536|ref|YP_003639783.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR] gi|296031114|gb|ADG81882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens JR] Length = 179 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 17 SFSEESAIWVNEV----ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 SE+ + V + + R + ++P+L Q G+V + A++ ++ LD+ Sbjct: 4 QLSEQELKEIRSVTEKALQKNNADREK--LLPILQEVQHNLGYVPKQAMQQISEALDIPE 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + + + TFY QF+L+P G + ++VC T C + G +++ +++ K D Sbjct: 62 VEIYGVTTFYNQFRLNPPG-KHQIKVCMGTACHMTGGHIIMDSFARRLNIKEGETTPDRE 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 S E V C G C AP+V+I + + P R++ I+ Sbjct: 121 FSLERVACVGCCALAPVVVIDEKIEGKVRPTRVDGIL 157 >gi|222053328|ref|YP_002535690.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221562617|gb|ACM18589.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 150 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++++I ++ +S++I +L+ Q + W+ + A+ VA L + R+ IATFY Sbjct: 4 AKIDQIIDKHNGE--ESSLIQILLDIQSEHHWLPKEALNRVAEKLQVPMSRIQHIATFYK 61 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F L P G R V VC T C +RG +++++ ++ KP +++ S E V C G Sbjct: 62 AFSLVPKG-RHEVHVCMGTACHVRGAQRVLDTVQDATGIKPGETDAELKFSLETVNCLGC 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170 C P++ + + ++ P ++ +++ Sbjct: 121 CALGPVMEVDGKHHGNIAPSQIASVLN 147 >gi|262369336|ref|ZP_06062664.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046] gi|262315404|gb|EEY96443.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046] Length = 169 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + + I YP R +A + L Q + GWV A + +A +L ++ + Sbjct: 17 LTTDEIHEIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQLNAIAQLLTISVADLEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY + PVG R + +C + C L G E L E + ++ + +DG + Sbjct: 75 VATFYNRIYRQPVG-RNVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C P +M+ +DT+ + ++++++ + Sbjct: 134 ICCLGNCDKGPTLMVNEDTHGLVEVSSVKQLLEKY 168 >gi|124515812|gb|EAY57321.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum rubarum] Length = 168 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E + + ++ + S + AV+ +L + QE+ G+V A+E V IL++ ++ + Sbjct: 8 EVTYEDIEDICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF P G + +++C T C +RG L++ + ++H +P D + E V Sbjct: 66 TFYSQFYQEPRG-KFVLKICVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C G+C APM M+ Y L+ +++ +I F P Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQFEEEAEKEEEP 167 >gi|150391793|ref|YP_001321842.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] gi|149951655|gb|ABR50183.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus metalliredigens QYMF] Length = 159 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 S +EE+ + V+ + ++P+L AQ+ G + + + + + + Sbjct: 5 SLTEENFQKLQIVME--EEKGEKGPLMPVLHEAQKIFGCIPLEVQKKICEEMKIPLSEIY 62 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+QF L P G + VC T C ++G + +++ I K + DG S Sbjct: 63 GVITFYSQFSLEPKGD-YVIGVCMGTACYVKGAQPILDKVSELIGAKAGCNSGDGRFSLV 121 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP++ + +D Y L + I++ + Sbjct: 122 ATRCIGACGLAPILTVNEDVYGRLKLTDIPGIVEKYQK 159 >gi|15966764|ref|NP_387117.1| formate dehydrogenase subunit gamma [Sinorhizobium meliloti 1021] gi|307301592|ref|ZP_07581351.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti BL225C] gi|307316384|ref|ZP_07595828.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti AK83] gi|15076036|emb|CAC47590.1| Putative NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium meliloti 1021] gi|306898224|gb|EFN28966.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti AK83] gi|306903290|gb|EFN33879.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium meliloti BL225C] Length = 159 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + +IP+L Q++ G+V ++ V+A L+++ V + TFY F+ P G R +++ Sbjct: 25 EGPLIPILHEIQDEFGYVPEESLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + + DG ++ E V C G C +P M+ + + Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143 Query: 159 DLTPERLEEIIDAFST 174 L LE ++ Sbjct: 144 RLDETVLEALVAEARR 159 >gi|218509481|ref|ZP_03507359.1| formate dehydrogenase subunit gamma [Rhizobium etli Brasil 5] Length = 159 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG+++ E V C G C AP M+ + Y Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143 Query: 159 DLTPERLEEIIDAFST 174 + + E++ Sbjct: 144 RVDDQLATELVAEARR 159 >gi|160942427|ref|ZP_02089734.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC BAA-613] gi|158434679|gb|EDP12446.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC BAA-613] Length = 162 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 4/158 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +E+I + +R + ++IP++ QE+ ++ + VA + + + +A+FY Sbjct: 7 YKKADEIIEMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKEIGITEAKAYSVASFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141 F G + +++C T C +R +++ + H D + E V C Sbjct: 65 ENFSFEEKG-KYIIKICDGTACHVRKSMPILDYLYKTLKLNAKKHTTEDALFTVETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 GAC AP + + + Y ++PE+++++++ G+ D Sbjct: 124 GACGLAPAITVNEKVYPKMSPEKMKKLLEEIKRGEPDA 161 >gi|154247409|ref|YP_001418367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter autotrophicus Py2] gi|154161494|gb|ABS68710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter autotrophicus Py2] Length = 176 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 11/174 (6%) Query: 11 FQPSSFSFSEESAI--------WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 +P F SE S +VIS + A +P+L QE G+V A+ Sbjct: 1 MRPHGFWESETSMAVYEDWSTERAAQVIS--ENRHLEGATMPILHALQETFGFVPDPAVP 58 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 ++A L+++ V + TFY F+ G R V++C C G + L + K+ Sbjct: 59 MIAESLNLSRAEVYGVLTFYHDFRREAPG-RHVVKLCAAEACQSVGGKALAQYVEEKLGV 117 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + DG ++ E + C G C AP ++ L + ++EI D F+ G+ Sbjct: 118 DMGSTSPDGRVTLEPIYCLGLCACAPSALVDGQLVGRLDRDAIDEIADCFANGK 171 >gi|220909417|ref|YP_002484728.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7425] gi|219866028|gb|ACL46367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC 7425] Length = 176 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 1/140 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 A+I +L +AQE G++ + +A L + RV +ATFY F L P G Sbjct: 38 QYRPEALIEVLHKAQESFGYLEEEVLVYIARGLKLPLSRVYGVATFYHLFSLKPSGAHTC 97 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V VC T C ++G K+ E ++ K DG +S C GAC AP+V+ Sbjct: 98 V-VCLGTACYVKGSNKVAEGLEQELGIKVGETTPDGKISLMAARCVGACGIAPVVVFDGA 156 Query: 156 TYEDLTPERLEEIIDAFSTG 175 PE I + G Sbjct: 157 VAGKQEPENTLARIKEWELG 176 >gi|295112091|emb|CBL28841.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Synergistetes bacterium SGP1] Length = 163 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 79/163 (48%), Gaps = 4/163 (2%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +++ + +++ R+ Q+ +IP++ Q ++ R A+E++A+ L ++ +V Sbjct: 1 MRYTDVDVSRIRDILLRHTAD--QTNLIPIMQGVQALYNYLPRPALEMIADYLHVSISKV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134 +ATFY F L+ G + ++ C T C +R ++ R ++ D + Sbjct: 59 YGVATFYENFSLNAKG-KHIIRCCDGTACHVRKGATILGAIRKELGLTAAQSTTDDMLFT 117 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 E V C GAC P+V++ + + +T ++ E++++ + Sbjct: 118 VEIVSCLGACGLGPVVVVDDEVHPTMTVDKARELLESIRGKEA 160 >gi|218961479|ref|YP_001741254.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma [Candidatus Cloacamonas acidaminovorans] gi|167730136|emb|CAO81048.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma [Candidatus Cloacamonas acidaminovorans] Length = 160 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 2/136 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 ++ +I +L AQE G++ E +A L++ ++ + TFY F ++P G + ++ V Sbjct: 26 RNPLIEILRSAQEIFGYLPVEVQEFIAQELNIPVNQIYGVVTFYNFFTMTPRG-KYNLNV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C ++G +L+++ ++ + DG + V C GAC AP+ +IG++TY Sbjct: 85 CLGTACFVKGAPRLVQMLSEELGIQMGETTKDGIFTMSAVRCVGACSLAPVFVIGEETYG 144 Query: 159 DLT-PERLEEIIDAFS 173 + +++ EI+ + Sbjct: 145 RIDSKDKIAEILKRYK 160 >gi|160878250|ref|YP_001557218.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] gi|160426916|gb|ABX40479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium phytofermentans ISDg] Length = 161 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 4/158 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ ++ +++ + +S VI ++ Q+ ++ + +A L ++ ++ Sbjct: 2 LGQDEKGLIDNILTAH--DYNKSHVIAIMQEVQKVYRYLPEEVLCYIAEKLKLSEAKIYG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWE 136 +ATFY F L P G + +++C T C +R ++E R + + D + E Sbjct: 60 VATFYENFSLEPKG-KYVIKICDGTACHVRKSIPILEEFRKVLGVTEKNPTTDDMIFTVE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 V C GAC AP+ + + +TPE+ + +I+ Sbjct: 119 TVSCLGACGLAPVCTVNDVVHAAMTPEKAKALIEQLRE 156 >gi|317133526|ref|YP_004092840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens harbinense YUAN-3] gi|315471505|gb|ADU28109.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens harbinense YUAN-3] Length = 160 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E++ V+ ++ R+ S SA+I +L QE+ ++ A+ V+ ++ + +A Sbjct: 4 EQTIAAVDAIVDRHDAS--PSALIAILEEIQEECHYLPGDALARVSERTGVSESEIFSVA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138 TFY F L+ G + ++VC T C +R ++ R+K+ D + E V Sbjct: 62 TFYKNFSLTAKG-KYVIKVCDGTACHVRKSIPILNALRDKLGVSEAKPTTDDQLFTVETV 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP++ + + +TPE ++D Sbjct: 121 SCLGACGLAPVMTVNDHVHPKMTPETALAVVDGLRE 156 >gi|254480843|ref|ZP_05094089.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] gi|41582333|gb|AAS07947.1| NADH-quinone oxidoreductase, E subunit [uncultured marine bacterium 463] gi|214038638|gb|EEB79299.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] Length = 167 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + S+E ++ I+ P + I L Q GWVS ++ +A L M+ + Sbjct: 12 ALSQEELQAIDAEIAHVP--YRDAVAIDALKIVQAHRGWVSDESLSAIAAHLHMSADELD 69 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 IATFY PVG + + +C + C ++GC+ L + ++ + SD + Sbjct: 70 GIATFYNLIYRRPVGDK-VILLCNSISCWIKGCDNLQQRITEELGVELGETTSDNRYTLL 128 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 V C GAC AP++M+G + +EDL E + I+ Sbjct: 129 PVTCLGACDKAPVMMVGDELHEDLCEESIIRIL 161 >gi|169830326|ref|YP_001716308.1| hypothetical protein Daud_0108 [Candidatus Desulforudis audaxviator MP104C] gi|169637170|gb|ACA58676.1| Protein of unknown function DUF166 [Candidatus Desulforudis audaxviator MP104C] Length = 377 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + E+ + S Y R S ++P+L AQE G++ A+ +A L + V Sbjct: 225 ALKEDIEAGLKSAFSFYKGHR--SELVPILQDAQEVFGYLPETAMLEIARFLRLPESHVY 282 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFY QF G R ++VC T C ++G ++++E ++ D S E Sbjct: 283 GVATFYDQFHFIRRG-RNQIKVCCGTACHVKGADRVLEEFERQLGVGHGETTPDYEYSLE 341 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 V C GAC AP+V++GK+ Y +TP R ++ Sbjct: 342 RVACVGACALAPVVVMGKEVYGQMTPGRARSVL 374 >gi|309791452|ref|ZP_07685957.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris trichoides DG6] gi|308226488|gb|EFO80211.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris trichoides DG6] Length = 174 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + + R A+I +L +AQE G++S + +A L + RV +ATFY Sbjct: 19 LKILEATMKR--NQYRPDALIEVLHKAQEIYGFLSPDLLVRIARSLHLPPSRVYGVATFY 76 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L+P GT +C T C +RG +L+ + H DG LS V C G Sbjct: 77 HFFSLAPQGT-HTCTICLGTACYVRGAAELMARAEHAAGIAAGHTTPDGHLSLASVRCIG 135 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP V+I + +TP+ + + A Sbjct: 136 ACGIAPAVVIDGNVTGHMTPDDIAAQVTAL 165 >gi|53804526|ref|YP_113817.1| NADH dehydrogenase subunit E [Methylococcus capsulatus str. Bath] gi|53758287|gb|AAU92578.1| NADH dehydrogenase I, E subunit [Methylococcus capsulatus str. Bath] Length = 157 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + + + + +P +A I L Q GW+S ++ +A +L M+ + Sbjct: 1 MTLTSDEIQAILREAGHFP--HPSAAAIEALNIVQRSHGWISDELLQEIAELLGMSPAEL 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 IATFY PVG R + C + C + G E K+ +G + Sbjct: 59 DSIATFYNLIYRRPVGRR-VIHYCNSVSCWMLGAEDNRRHLSEKLGIAVGETTGNGEYTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + C GAC AP++MIG +T+ ++ P RL++I+ Sbjct: 118 LPIVCLGACDKAPVLMIGDETHFNVDPARLDDIL 151 >gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synechococcus sp. PCC 7002] Length = 170 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q +I +L +AQE G++ +E VA L + RV +ATFY F L P G Sbjct: 30 NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHT 89 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G ++L++ +H KP D +S C GAC AP V+ Sbjct: 90 CV-VCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 148 Query: 155 DTYEDLTPERLEEIIDAFSTG 175 + + L + S G Sbjct: 149 EVCGKQNADHLMARLRQLSEG 169 >gi|189218229|ref|YP_001938871.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum infernorum V4] gi|189185087|gb|ACD82272.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum infernorum V4] Length = 171 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 7/156 (4%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++IS+YP S+ +SA +PLL Q+ G+VSR +E +A L++ I V EIATFY Sbjct: 17 DEAEKIISQYPVSK-RSASLPLLHLWQKHFGYVSREGVEWIAQKLELEPIAVEEIATFYP 75 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH--QKPLH---RNSDGTLSWEEV 138 + P+G + +VC T C L G +L + + + Q+ H + DG S E V Sbjct: 76 MIRHRPLG-KYQFKVCRTLSCALAGSYQLFDYIKQNCNALQEVGHHVYLSEDGQFSVEFV 134 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 EC AC NAP++MI ++ + D+T E+++ I+ Sbjct: 135 ECLAACGNAPVMMINEEEWMDVTKEKIQGILAQLRK 170 >gi|298293799|ref|YP_003695738.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella DSM 506] gi|296930310|gb|ADH91119.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella DSM 506] Length = 157 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S VI + S + ++P+L QE G+V A + ++A +L+++ V + TF Sbjct: 8 SEERARAVIEEF--SHLEGPLMPMLHAVQETFGYVPEAVVPMLAEMLNISRAEVHGVVTF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R +++C C G + L + +++ K +DG ++ E + C Sbjct: 66 YHDFRHEPAG-RHVLKLCRAEACQAAGGDALADHAEHRLGCKLGETTADGRVTVEPIYCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C AP M+ L RL+ +I Sbjct: 125 GLCATAPSAMLDGRIVARLNERRLDALIAE 154 >gi|222087422|ref|YP_002545959.1| formate dehydrogenase [Agrobacterium radiobacter K84] gi|221724870|gb|ACM28026.1| formate dehydrogenase [Agrobacterium radiobacter K84] Length = 159 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L QE+ G+V + + ++A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHGIQEEFGYVPQDTLPLIAKALNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + + DG+++ E V C G C AP M+ + Y Sbjct: 84 CRAEACQSMGGDQLAERVKRLLGIDFHQTTLDGSVTLEPVYCLGLCACAPAAMLDGELYG 143 Query: 159 DLTPERLEEIIDAFST 174 L E E+++ Sbjct: 144 RLDDEGAEDLVKEARR 159 >gi|227204477|dbj|BAH57090.1| AT4G02580 [Arabidopsis thaliana] Length = 163 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 14/155 (9%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA ++++A IRV E+ATFY+ F + VG + H+ VCGTTPCM+RG + + + Sbjct: 1 MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170 K DG S E+EC G CVNAPM+ + + +ED+TPE++ EI++ Sbjct: 60 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 119 Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204 +G+ G Q RI P GG +LL Sbjct: 120 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 152 >gi|331696854|ref|YP_004333093.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951543|gb|AEA25240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 158 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 25 WVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V E++ R + + ++P+L Q + G V + + ++A L+++ V + TFY Sbjct: 9 RVAEIVGRIVEAHRGSRGPLLPILHAVQAELGHVPPSVVPLLAERLNLSRAEVHGVVTFY 68 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F+ +P G R V+VC C G + L+E + + DG ++ +EV C G Sbjct: 69 RDFRAAPPG-RVTVRVCRAEACQAVGGQALLEHAVASLGVERGETTPDGAVTLDEVFCLG 127 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C P V +G + +TP RL+ +I Sbjct: 128 NCALGPAVQVGDRLHGRVTPARLDALIGQCR 158 >gi|33519941|ref|NP_878773.1| NADH dehydrogenase subunit E [Candidatus Blochmannia floridanus] gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [Candidatus Blochmannia floridanus] Length = 154 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 3/157 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 F++E + + Y R +A I L Q+++GWVS AI++V+ +L ++ V Sbjct: 1 MKFNKEELDIIRLECTHYENDR--AASIEALKIIQKRQGWVSDDAIKLVSQVLHISESDV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 IATFY Q PVG + V+ C + C + GCE++ + + + K + D + Sbjct: 59 EGIATFYNQIFRQPVG-KYIVRYCDSNVCYINGCEQIQQTLESSLGIKIGNTTQDNKFTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C +P++MI K Y + P + +I+ ++ Sbjct: 118 LPTCCMGLCDKSPVLMIDKKIYSCIVPSDIMQILRSY 154 >gi|312879270|ref|ZP_07739070.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas paucivorans DSM 12260] gi|310782561|gb|EFQ22959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas paucivorans DSM 12260] Length = 162 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ RYPP ++ +L Q ++ R + VA L + RV +ATFY Sbjct: 15 LEALLRRYPP--HPRYLLAILQDVQSACRFLPRTVLGRVAEYLRVPESRVFGVATFYKAL 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G + V+VC T C LRG K++E + + DG S E V C GAC Sbjct: 73 SLTPRGRK-TVKVCMGTACHLRGAPKVLEALEAALGIRSGGTTEDGAFSLETVNCLGACA 131 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 AP+V + Y ++P +++ +++ Sbjct: 132 LAPVVTVEDTPYGTMSPAKVQAMLEE 157 >gi|269792084|ref|YP_003316988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099719|gb|ACZ18706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 156 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E++ RYP R ++ L Q + V R A+E + + RV +ATFY Sbjct: 8 DRLKEILHRYP--RHPRFLLAFLQDVQREFKHVPREAMEASSERFMVPMSRVYSVATFYR 65 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 L P G + ++VC T C LRG +++E + + DG S E V C GA Sbjct: 66 ALSLVPRGRK-TIKVCMGTACHLRGAPRVLETIEEALQVRCGGTTQDGEFSVEAVNCLGA 124 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C AP+VM+ Y +T ++ E+++ Sbjct: 125 CALAPVVMVEDRCYGSMTAAKVREMLEE 152 >gi|304313909|ref|YP_003849056.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] gi|302587368|gb|ADL57743.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] Length = 149 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + + S Y + S +IP+L Q+ G++ A+E VA ++ V +ATFY Sbjct: 3 KKLKGIFSGY--TGHASEIIPILQDIQDVYGYLPEHALEEVAGFTGVSKTHVYGVATFYA 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 QF+ P G + + VC T C + G E++++ + D S E V C G Sbjct: 61 QFRFKPKGRKH-IMVCTGTACHVSGAEQVLDALERHLGIGEGDVTEDMEYSLESVGCIGC 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168 C AP M+ + + P R+ +I Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVSKI 144 >gi|78222327|ref|YP_384074.1| bidirectional hydrogenase complex protein HoxE [Geobacter metallireducens GS-15] gi|78193582|gb|ABB31349.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Geobacter metallireducens GS-15] Length = 205 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 6/174 (3%) Query: 10 EFQPSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + + + + V I ++ A+I +L AQE G++S + VA L Sbjct: 21 QTPSTPTELTSDPRFQAVERTIKQF--QCRADALIEVLHVAQEAFGYLSDELMAHVARQL 78 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + + +V +ATFY F L P G V VC T C ++ +++ + K Sbjct: 79 KIPFSQVYGVATFYHFFSLEPRGAHTCV-VCTGTACYVKRSAEILVRLEQEFRVKAGKTT 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 DG L+ + C G+C AP++++ +T TP+ + A + RP Sbjct: 138 EDGGLTLSTIRCLGSCGQAPVMVLDGETVGQCTPDSAVVAVKALQ--ESGRPRP 189 >gi|190893705|ref|YP_001980247.1| formate dehydrogenase, gamma subunit [Rhizobium etli CIAT 652] gi|190698984|gb|ACE93069.1| formate dehydrogenase protein, gamma subunit [Rhizobium etli CIAT 652] Length = 159 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG+++ E V C G C AP M+ + + Sbjct: 84 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVHG 143 Query: 159 DLTPERLEEIIDAFST 174 + + E++ Sbjct: 144 RVDEQLATELVAEARR 159 >gi|284050503|ref|ZP_06380713.1| bidirectional hydrogenase complex protein HoxE [Arthrospira platensis str. Paraca] gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FACHB341] gi|291570292|dbj|BAI92564.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 179 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 1/139 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G Sbjct: 37 SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLQLPLSQVYGVATFYHLFSLKPSGAHT 96 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +++ K K DG +S C GAC AP + Sbjct: 97 CV-VCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155 Query: 155 DTYEDLTPERLEEIIDAFS 173 TPE + + Sbjct: 156 KVAGQQTPEMAVARLQKWQ 174 >gi|227823605|ref|YP_002827578.1| formate dehydrogenase subunit gamma [Sinorhizobium fredii NGR234] gi|227342607|gb|ACP26825.1| NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium fredii NGR234] Length = 159 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L Q++ G+V A + V+A L+++ V + TFY F+ P G R +++ Sbjct: 25 EGPLLPILHEIQDEFGYVPEACLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L E + + DG ++ E V C G C +P M+ + + Sbjct: 84 CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143 Query: 159 DLTPERLEEIIDAFST 174 L LE ++ Sbjct: 144 RLDDAELEALVAEARR 159 >gi|225175950|ref|ZP_03729942.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] gi|225168538|gb|EEG77340.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter alkaliphilus AHT 1] Length = 182 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++ ++ R+ + IP+L Q G+V+ ++ V+ + + + I TFY Sbjct: 18 LLAIDAIVQRHNAD--PGSAIPILQDIQNTFGYVAPEVLQRVSELSGILESELYSIVTFY 75 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 +QF++ P+G +QVC T C L G E++ E ++ K + DG + E+V C G Sbjct: 76 SQFRMEPIGE-NLIQVCHGTACHLAGAERVSEAIMHETGAKDGGTSPDGKFTLEKVACLG 134 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 C AP++ + ++TY + P + +++ + GQ + + G Sbjct: 135 CCSLAPVITVNEETYGRVAPNEVGKVLKEIN-GQTEDKKAG 174 >gi|167761073|ref|ZP_02433200.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704] gi|167661307|gb|EDS05437.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704] Length = 161 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E S + +I Y S+ + + ++ Q +V R +E +A L + Sbjct: 3 ELLEVSKESIERIIHSYECSQRYA--LAIMQDMQRTYQYVPREGLEALAEYLGCPVSALY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +ATFY L P G ++ C T C +RG LI+ ++ +P DG S+E Sbjct: 61 AMATFYKALSLVPKGE-HTIKCCDGTACHIRGASTLIDGIERELGIRPGETTKDGLFSFE 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 V C G+C AP++++ Y +T E+L EII+ G Sbjct: 120 TVNCLGSCALAPVLVVDDVYYGKVTLEKLREIIEDVRKG 158 >gi|253701407|ref|YP_003022596.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] gi|251776257|gb|ACT18838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 152 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ +I ++ QS++I +L+ Q + W+ + A++ V LD+ R+ I TFY Sbjct: 6 AKIDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYK 63 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G R + VC T C +RG +++++ + I K +++ S E V C G Sbjct: 64 AFSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDAELKFSLETVNCLGC 122 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C P+++I + + ++ P + E++ + Sbjct: 123 CALGPVMVIDGEYHGNVAPAQSAEVLKNY 151 >gi|325262542|ref|ZP_08129279.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5] gi|324032374|gb|EGB93652.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5] Length = 157 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + +E+I+ + Q+++IP++ Q + ++ + VA L + + Sbjct: 2 LDQTYYDKADEIIASHGAE--QASLIPIIQDIQTEYRYLPPELLSYVAGKLGINEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R +++ +++ K D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILDRLYSELGLSKEKATTDDMLFTLE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP++ + Y +TP+ ++I Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDTAADLIRELR 155 >gi|306821644|ref|ZP_07455242.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550389|gb|EFM38382.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 179 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P+L AQ G++ + +E++++ L + +ATFY+QF P G + + V Sbjct: 42 RGAVMPILQEAQRIFGYIPKEIVEIMSHRLGKHSSEIYGVATFYSQFTFIPKG-KYAISV 100 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C T C + G +++E ++ K D S E C G C AP+V + Y Sbjct: 101 CLGTACYVNGANEILEEFEKQLKIKKGETTKDLLFSIVETRCVGECAQAPVVTVNDKVYP 160 Query: 159 DLTPERLEEIIDAFSTGQ 176 + +++++ + + Sbjct: 161 KFSVSDVDDLLTEYREME 178 >gi|320160661|ref|YP_004173885.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1] gi|319994514|dbj|BAJ63285.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1] Length = 168 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + R+ +A+I L QE G+VSR A+ VA L++ +V +ATFY Sbjct: 18 KIVEATMRRH--GYASTALIETLHSIQETFGFVSREALNYVAESLNIPPAKVFGVATFYN 75 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F L+PVG +C T C ++G ++++ + + +P DG L++ C GA Sbjct: 76 LFNLNPVGE-HVFSLCTGTACYVKGAGEIVDFMKEEFGLEPGQTTPDGKLTFMVARCVGA 134 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP++++ + L E ++ I + Sbjct: 135 CGLAPVMILDGEVVGKLGVEEMKAKIREW 163 >gi|254426024|ref|ZP_05039741.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Synechococcus sp. PCC 7335] gi|196188447|gb|EDX83412.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Synechococcus sp. PCC 7335] Length = 192 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 15/177 (8%) Query: 7 AEEEFQPSSFSFSE----------ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEG 54 + QP+S + E W + + R+ A+I +L +AQE Sbjct: 4 SPASTQPTSTESTPVQGHSVEGDLEDKRWQLLAATMKRH--QYRSDALIEVLHKAQELFD 61 Query: 55 WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 ++S + VA L + +V +ATFY F L+P G VC T C ++G +L+ Sbjct: 62 YLSPTLLAEVAKSLQLPLSQVYGVATFYHFFSLAPSG-HHSCTVCLGTACYVKGAAQLLA 120 Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 ++ +P +DG +S C GAC AP+V++ T E + + IDA Sbjct: 121 KLEQRLGIQPGQTTADGEMSLSTARCLGACGIAPVVVVDDAIAGHQTTETIIQRIDA 177 >gi|88602557|ref|YP_502735.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanospirillum hungatei JF-1] gi|88188019|gb|ABD41016.1| NADH dehydrogenase subunit E [Methanospirillum hungatei JF-1] Length = 160 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++E+I +YP + +L Q QE + +++V+ LD+ + + TF Sbjct: 2 DEKRLDEIIEKYP--YPAGRTLGVLREIQIQERHIPMDTLKLVSEKLDLPLSELFALVTF 59 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-------KPLHRNSDGTLS 134 Y+ F L PVG + VC TPC ++G EK++E + K L D + Sbjct: 60 YSFFSLKPVGE-HLITVCMGTPCHVKGAEKILETLEEHLGLSGEVQDGKYLQTTPDNKFT 118 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 E C GAC AP++ + + + +TPER+ EI++ + Sbjct: 119 VEIARCFGACSMAPVLHVDGELHGYVTPERIPEILEMY 156 >gi|119385583|ref|YP_916638.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Paracoccus denitrificans PD1222] gi|119376178|gb|ABL70942.1| formate dehydrogenase gamma subunit [Paracoccus denitrificans PD1222] Length = 159 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +S + + + ++E+I+ + + ++P+L Q + G+V A V+A L M Sbjct: 2 TSPATDADFLLRLDEIIAAHKG--REGPLLPILHDLQAEWGYVPEEAQPVLAEALGMTRA 59 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY F+ P G R +++C C G E L + R + DG L Sbjct: 60 EVHGVVSFYHDFRDHPHG-RHVLRLCRAEACQSMGAEALADEVRAALGIDWHETTPDGRL 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + E V C G C AP +G+ + ++++++ Sbjct: 119 TLEPVFCLGLCACAPSAQMGERLIGRASLAKVQKLVAE 156 >gi|168700383|ref|ZP_02732660.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246] Length = 160 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + SE+ + I +YP R Q+ +P L ++ VS AI +A IL++ V Sbjct: 3 ALSEDMKNRIRAFIPKYP--RKQAVTLPALHLVHDELRTVSNEAIVEIAEILELHPSEVH 60 Query: 77 EIATFYTQFQLSPVGTR---AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + TFY F+ G + + VC CMLRG +LIE C +K+ +DG + Sbjct: 61 DTMTFYAFFKGE--GEKLGTTRLWVCRGLACMLRGAYELIEHCEHKLGVHCGQTTADGKV 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E EC GAC AP +I ++TPE+ +++I Sbjct: 119 TLEFAECIGACDGAPACLIEDVHAMNVTPEKADQLITELK 158 >gi|86359440|ref|YP_471332.1| formate dehydrogenase subunit gamma [Rhizobium etli CFN 42] gi|86283542|gb|ABC92605.1| formate dehydrogenase, gamma subunit protein [Rhizobium etli CFN 42] Length = 159 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P+L + Q++ G+V + A+ V+A L+++ V + TFY ++ P G R +++ Sbjct: 25 EGPLLPILHQVQQEFGYVPQQALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G + L E + + DG+++ E V C G C AP M+ + Y Sbjct: 84 CRAEACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143 Query: 159 DLTPERLEEIIDAFST 174 L + E++ Sbjct: 144 RLDDQLATELVAEARR 159 >gi|187477323|ref|YP_785347.1| formate dehydrogenase subunit gamma [Bordetella avium 197N] gi|115421909|emb|CAJ48429.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella avium 197N] Length = 155 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + +R+ A++PLL QE+ G + + V+A L ++ V + TFY Sbjct: 7 AVAQRLAARFAD--QPGALLPLLHALQEELGCIPPETVGVLAEALSLSRAEVHGVITFYP 64 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ P G R +Q+C C G + L + ++ R++DG + E C G Sbjct: 65 HFRTEPAG-RHVLQICRAEACQAMGGDALAAHAQARLGCDFHARSADGAFTLEPAYCLGL 123 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C +P +M+ + +TP RL+ +ID Sbjct: 124 CAQSPALMLDGRPHARMTPARLDRLIDQ 151 >gi|224456276|ref|ZP_03664749.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 131 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Query: 43 IPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 + L Q+Q G +++ +A L ++ + V E+ATFY + L PVG R + VC Sbjct: 1 MEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCMYNLKPVG-RHKLNVCTN 59 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 CML G +++ K+ KP DG ++ +EVECQGAC +PM+ + K YE+LT Sbjct: 60 VSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGACCGSPMLEVDKVFYENLT 119 Query: 162 PERLEEIIDAF 172 E++ +IID+ Sbjct: 120 IEKVNQIIDSL 130 >gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum seropedicae SmR1] gi|300073591|gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V +I+ A++P+L QE+ G++ A+ ++A L+++ V + +FY Sbjct: 10 AAVRGIIAERKE--MAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ P G R VQVC C RG E L E +N + ++DG + E V C G Sbjct: 68 FFRQEPAG-RHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQ 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C P + + + + + ++ + +I A Sbjct: 127 CAIGPNLTLDDELHARVDADKFKRLIQA 154 >gi|312144097|ref|YP_003995543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp. 'sapolanicus'] gi|311904748|gb|ADQ15189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp. 'sapolanicus'] Length = 147 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 7/149 (4%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + + ++I + +++ L Q+ G++ IE +A +++ + +F Sbjct: 3 NEKIIEDII------FEEGSLLEELHNVQDTYGYIPENEIENLAEKFNLSRANAYGVISF 56 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ P G + +++C + C L E L++ ++ + + + D + E VEC Sbjct: 57 YSMLYTEPTG-KYIIRICDSISCHLNESESLLKAVKSYLGIENNETSKDKKFTLEVVECL 115 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170 G C P++MI YE LT + EI++ Sbjct: 116 GHCAEGPVMMINDQIYEKLTKTKAIEILN 144 >gi|224824819|ref|ZP_03697926.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002] gi|224603312|gb|EEG09488.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002] Length = 166 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68 S +S ++ +++YP + +SAV+ L A E+ +++ IE VAN L Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALEERRSTGETPEARCLNQEVIEFVANYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 ++ + E+ATFY + + PVG + + VC PC L G E K+ + Sbjct: 62 EIPPVAAYEVATFYNMYDMKPVG-KYKITVCTNLPCALSGGVNAAEYISGKLGIAIGETS 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173 +DG + E EC GAC +AP++++ +TPE +++ + Sbjct: 121 TDGMYTLLEGECMGACGDAPVLLVNNHSMCSFMTPEAIDKKLAELK 166 >gi|225026579|ref|ZP_03715771.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353] gi|224956071|gb|EEG37280.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353] Length = 158 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 4/155 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + +I + ++++IP++ Q + ++ + VA+ + + + +ATFY Sbjct: 7 YDKADTIIKSHGA--MEASLIPIIQDIQSEYRYLPPELLSYVADQIGITEAKAFSVATFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141 F P G + ++VC T C +R ++E +++ K D + E V C Sbjct: 65 ENFSFEPKG-KYVIKVCDGTACHVRKSTTILERIYSELGLSKDKVTTEDMLFTVETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 GAC AP++ + Y +TP+ +++ + Sbjct: 124 GACGLAPVLTVNDKVYPSMTPDDAAQLLQKLREEE 158 >gi|284009323|emb|CBA76484.1| NADH-quinone oxidoreductase chain E [Arsenophonus nasoniae] Length = 153 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 Y +R +A I L Q++ GWV AI +A++L + V +ATFY+Q PV Sbjct: 14 HHYEDAR--AASIEALKIVQKKRGWVEDGAIYAIASLLGIPASDVEGVATFYSQIYRQPV 71 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R ++ C + C + G + + + P +DG + C G C P + Sbjct: 72 G-RHIIRYCDSVVCHITGYQGIETEIIKLLQIAPGQTTADGRFTLLPTCCLGNCDKGPTM 130 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + P ++ +++ + Sbjct: 131 MIDEDTHSHVKPSDIQRLLEQY 152 >gi|167746891|ref|ZP_02419018.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662] gi|167653851|gb|EDR97980.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662] Length = 157 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ +E+I+ + Q+A+IP++ Q + ++ + VA+ L + + Sbjct: 2 LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R ++E +++ + D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP++ + Y +TP+ E+I Sbjct: 119 TVSCLGACGLAPVITVNDKVYPAMTPDAAAELIRELR 155 >gi|189485527|ref|YP_001956468.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287486|dbj|BAG14007.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 157 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 +S +IP+L QE+ ++ + + +A L+ + V +ATF++ F L G R +++ Sbjct: 22 KSKLIPILQAVQEEYKYLPKEILVFIALSLNTSPAGVYGVATFFSHFTLKHKG-RHIIKI 80 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 C C ++ LI +NK+ K D + E V C GAC AP+ +I +D Y Sbjct: 81 CDGIACHVKKSNSLINALKNKLGLKEAEYSTKDVFFTIETVSCLGACGLAPVFLIDEDIY 140 Query: 158 EDLTPERLEEIIDA 171 +TP++ E+ID Sbjct: 141 GQMTPDKAVELIDK 154 >gi|34496400|ref|NP_900615.1| NADH dehydrogenase subunit E [Chromobacterium violaceum ATCC 12472] gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase, chain E [Chromobacterium violaceum ATCC 12472] Length = 166 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68 S +S ++ +++YP + +SAV+ L A ++ ++ IE VAN L Sbjct: 2 LSAQSLALIDREVAKYPADQKRSAVMGALRIALDERRAAGETPEARCLNPELIEFVANYL 61 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 +A + E+ATFY + + PVG + + VC PC L G E K+ + Sbjct: 62 GIAPVAAYEVATFYNMYDMKPVG-KFKITVCTNLPCALSGGVNAAEYISKKLGIAIGETS 120 Query: 129 SDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173 +DG + E EC GAC +AP++++ +TPE +++ + Sbjct: 121 ADGMYTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDKKLAELK 166 >gi|167755801|ref|ZP_02427928.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402] gi|167704740|gb|EDS19319.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402] Length = 242 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E ++E+++++ + ++ L Q + G++ A+E ++ + + +V Sbjct: 82 KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVY 139 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+QF P G + + VC T C + G + ++++ + + DG S + Sbjct: 140 GVVTFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 198 Query: 137 EVECQGACVNAPMVMIGKDTYE 158 C GAC AP+V + + Sbjct: 199 ATRCVGACGLAPVVSVDGIVFG 220 >gi|159186285|ref|NP_355959.2| formate dehydrogenase subunit gamma [Agrobacterium tumefaciens str. C58] gi|159141419|gb|AAK88744.2| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens str. C58] Length = 159 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + A V+ VI+ + ++P+L QE+ G++ +A +++A+ L+++ V + Sbjct: 8 ADEAARVSAVIN--ECLHLEGPLLPILHAVQEEFGYIPESAKQIIASALNISRAEVHGVV 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ P G R +++C C G E L E +N++ + +DG+++ E V Sbjct: 66 TFYPDFRDHPQG-RHVLKLCRAEACQSMGGEPLAETIKNRLGLEWHETAADGSVTLEPVF 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP +M+ + + L + L I+ Sbjct: 125 CLGLCAQAPALMLDGEVHARLDDDCLGNILTEARR 159 >gi|189425851|ref|YP_001953028.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] gi|189422110|gb|ACD96508.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi SZ] Length = 171 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 A+I +L AQE G++SR + VA L + +V +ATFY F L P G + Sbjct: 28 QYQPDALIEVLHTAQEAFGYLSRELLAHVAARLKLPESQVFGVATFYHFFTLRPKGEHSC 87 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC T C ++G +++ K +DG LS C G C APM+M+ Sbjct: 88 I-VCTGTACYVKGAGEILGRLEQAAGIKAGQTTADGRLSLGTARCLGNCSLAPMMMLDDT 146 Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + PE + +D + G Sbjct: 147 VHG---PESPDGAVDKLNRLLEVPHEQG 171 >gi|260576445|ref|ZP_05844435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp. SW2] gi|259021328|gb|EEW24634.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp. SW2] Length = 157 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A V E+++ + + ++P+L Q G V + A+ ++A L+++ V + +FY Sbjct: 9 AARVAEILAAH--QGLEGPLLPILHALQAAFGHVPQEALPLIAKNLNLSRAEVHGVMSFY 66 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F+ +P G R +++C C G EKL R + + DG ++ E V C G Sbjct: 67 HDFRAAPAG-RHVLKLCRAEACQAMGAEKLAAHARTSLGIEWHETTRDGAVTLEPVFCLG 125 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP ++ + R + ++ Sbjct: 126 LCACAPAALMDGKVVGRVDEARFDALVAEVRA 157 >gi|182677975|ref|YP_001832121.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633858|gb|ACB94632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 157 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +I+++ + A +P+ Q+ G+V A+ ++A L+++ V + TF Sbjct: 8 NDAVAATIIAQHKA--QEGATLPIFHALQKAFGYVPAEAVPMIAEALNLSRAEVHGVLTF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G +++C C G + L ++ K D ++ E V C Sbjct: 66 YHDFRSEPPGC-HILKLCRAEACQAAGGDHLATGVERQLGIKLGETTPDQQVTLEPVFCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C AP M+ + RL+ +++ + Sbjct: 125 GLCAVAPSAMLDDQPIGRVDAARLDALLNEVRS 157 >gi|317471700|ref|ZP_07931041.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900804|gb|EFV22777.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 157 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ +E+I+ + Q+A+IP++ Q + ++ + VA+ L + + Sbjct: 2 LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136 +ATFY F P G + ++VC T C +R ++E +++ + D + E Sbjct: 60 VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C GAC AP++ + Y +TP+ E+I Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDAAAELIRELR 155 >gi|298384457|ref|ZP_06994017.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14] gi|298262736|gb|EFI05600.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14] Length = 303 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + ++ +I +L AQ G++ ++A+ L + +V + TFYT Sbjct: 12 EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F ++P G + + VC T C +RG EKL+E + + + DG S + + C GA Sbjct: 70 FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128 Query: 144 CVNAPMVMIGKD 155 C AP+VMIG+ Sbjct: 129 CGLAPVVMIGEK 140 >gi|254441245|ref|ZP_05054738.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Octadecabacter antarcticus 307] gi|198251323|gb|EDY75638.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Octadecabacter antarcticus 307] Length = 182 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + + ++++R+ S + ++P+L Q + G++ ++++A+ ++ V + Sbjct: 30 DAATTEIMQDILARH--SVQEGPLLPILHSVQAEFGFIPSDVVQIIADHQNITRAEVHGV 87 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ +P G + +++C C G L + K+ ++G ++ E V Sbjct: 88 ISFYHDFRDAPAG-KHTIKICRAEACQAVGSNALSKRVLEKLGVDWGGTTANGAVTIEAV 146 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C P M+ + +L++++ Sbjct: 147 YCLGLCACGPAAMVDNKVVGRVDAAKLDKLLAE 179 >gi|160902611|ref|YP_001568192.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] gi|160360255|gb|ABX31869.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis SJ95] Length = 154 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 ++ L QE G++S I +A D+ R+ + +FY+ F L P G + V+VC + Sbjct: 24 LLEELHDIQETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTG-KYIVRVCDS 82 Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161 C L L+ ++ + + D + E EC G C P++M+ Y LT Sbjct: 83 VSCRLNESADLVRALKDYLKVEENETTKDKKFTLEVAECLGHCDEGPVMMVNDTYYTHLT 142 Query: 162 PERLEEIIDAF 172 + +I+D+ Sbjct: 143 VTKAIQILDSL 153 >gi|307544489|ref|YP_003896968.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581] gi|307216513|emb|CBV41783.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581] Length = 163 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A++P+L Q++ G+V AA+ ++A L++ V + +FY F+ S G+ V+ Sbjct: 22 KPGALLPILHAIQDRVGFVPDAAVPIIAESLNLTRAEVHGVISFYHHFRTSRPGS-HVVR 80 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C G L ++ + D ++ E V C G C P + + + Sbjct: 81 ICRAEACQAMGARALEAHAKSSLEVDYHQTTRDQEITLEAVYCLGNCACGPSICVDDRVH 140 Query: 158 EDLTPERLEEIIDAFST 174 +T E + ++D T Sbjct: 141 GRVTTETFDRLVDDLRT 157 >gi|163782977|ref|ZP_02177972.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] gi|159881657|gb|EDP75166.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] Length = 154 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F +E +N+ I+ +P R + A++ L Q+ G+V ++ +A++LD+ V + Sbjct: 2 FEQELLEKLNQHINYFP--RKEQAILVCLHEIQDHYGYVPPESLRPLADMLDLPLNHVEQ 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + FY F + ++VC + C G ++L++ + KP DG Sbjct: 60 VVAFYDMFDRQ-TPAKYRIRVCVSVVCHFLGKQELLKALEKALKIKPGEVTPDGKFKIVP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V+C GAC AP+ M+ +DTY+ E+L E++ + Sbjct: 119 VQCLGACSEAPVFMVNEDTYKFEGEEKLNEVLSKY 153 >gi|118579912|ref|YP_901162.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] gi|118502622|gb|ABK99104.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter propionicus DSM 2379] Length = 169 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 4/156 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V+ ++ +Y + + +L Q++ ++ + V LD+ +V + +FY Sbjct: 17 EVDLILEKY--DHQPARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAH 74 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143 F L P G + +++C T C + ++E K+ D + E V C GA Sbjct: 75 FTLEPRG-KYVIRLCDGTACHAKRSIPILEALYAKLGLSSKKVTTPDMLFTVETVTCLGA 133 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C AP+++I ++ Y +TP +ID + + Sbjct: 134 CGLAPVMLINEEVYGRVTPASAVALIDEIIAKEANA 169 >gi|296124093|ref|YP_003631871.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces limnophilus DSM 3776] gi|296016433|gb|ADG69672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces limnophilus DSM 3776] Length = 159 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 5/159 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S++ + +YP R + +P L ++ VS AIE +A +L++ V + Sbjct: 4 LSDDLRARIVAEFPKYPNKR--AVTLPALHLVHDELRHVSTGAIEEIAELLELHPSEVHD 61 Query: 78 IATFYTQFQLS--PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 TFY F+ P+G + V VC + C LRG E+L+ K+H P DG ++ Sbjct: 62 TMTFYQFFRTEENPLG-KHRVWVCRSISCGLRGGEELLAHMCEKLHVTPGGTTEDGKITL 120 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E EC G C AP V++ +D ++T E +++I Sbjct: 121 EFAECLGVCDGAPCVLVDEDCVHNVTHEMADKLISELKA 159 >gi|222150020|ref|YP_002550977.1| formate dehydrogenase subunit gamma [Agrobacterium vitis S4] gi|221737002|gb|ACM37965.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4] Length = 159 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E V +I + ++P+L Q G V +A V+A L+++ V + Sbjct: 8 EADMARVEAIID--GLKHLEGPLLPILHEIQRTFGCVPDSAKPVIARALNLSRAEVHGVV 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G E L E + ++ +DG ++ E V Sbjct: 66 SFYHDFRDHPSG-RHVLKLCRAEACQSLGGEPLGETIKARLGIDWHETTADGAVTLEPVF 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G C AP M+ + + L L++++ Sbjct: 125 CLGLCACAPAAMLDGELHGRLDEHCLDDLL 154 >gi|311108351|ref|YP_003981204.1| NAD-dependent formate dehydrogenase subunit delta [Achromobacter xylosoxidans A8] gi|310763040|gb|ADP18489.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter xylosoxidans A8] Length = 185 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +++R ++P+L Q + G + A++ +A L+++ V + TF Sbjct: 33 AIAATARILARLKD--QPGPLLPVLHAVQHELGCIPAPAVQTIAEALNLSRAEVHGVITF 90 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P R ++VC C G E L R + + +G + E V C Sbjct: 91 YPHFRSEPA-ARHTLEVCRAEACQAMGGEHLAAHARTALGCDFHANSRNGDFTLEPVYCL 149 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C +P VMI Y +TPE+L+ ++ Sbjct: 150 GLCAQSPAVMIDGRPYARVTPEKLDRLLAR 179 >gi|26988907|ref|NP_744332.1| formate dehydrogenase subunit gamma [Pseudomonas putida KT2440] gi|24983718|gb|AAN67796.1|AE016411_1 formate dehydrogenase, gamma subunit, putative [Pseudomonas putida KT2440] Length = 160 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG++S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + LTPERL ++++ Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156 >gi|313499697|gb|ADR61063.1| Formate dehydrogenase subunit gamma [Pseudomonas putida BIRD-1] Length = 160 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEMGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG++S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + LTPERL ++++ Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156 >gi|225570604|ref|ZP_03779629.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM 15053] gi|225160617|gb|EEG73236.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM 15053] Length = 157 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 4/152 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 +EVI+ + +++IP++ Q + ++ + VA L + + +ATFY Sbjct: 7 YDKADEVIASHGCGH--ASLIPIIQDIQSEYRYLPPELLSYVAGKLGITEAKAYSVATFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141 F P G + ++VC T C +R ++E +++ K D + E V C Sbjct: 65 ENFSFEPKG-KYVIKVCDGTACHVRKSIPILERLYSELGLSKEKVTTDDMLFTLETVSCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 GAC AP++ + Y +TP+ E+I Sbjct: 124 GACGLAPVLTVNDKVYPAMTPDAAAELIHELR 155 >gi|300087733|ref|YP_003758255.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527466|gb|ADJ25934.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 156 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+EV+ ++ S ++ +L Q Q ++ R +I +A LD+ RV +ATF+ F Sbjct: 12 VDEVVVKHNGD--PSMLVAMLQDVQAQLYFLPRESIVRIAEKLDIPLTRVYSVATFFRAF 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L P G + +++VC T C +RG EK+++ ++ D + E C GAC Sbjct: 70 SLKPRG-KHNLKVCMGTACHVRGAEKVLDKIETELCVCAGETTKDMKYTIETANCVGACA 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P+V++ + +T ++++ I++ + Sbjct: 129 LGPVVVVDNEFVGQMTTDKVKTILEKCN 156 >gi|297539619|ref|YP_003675388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp. 301] gi|297258966|gb|ADI30811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp. 301] Length = 159 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + +IS + A++PLL Q+ G+V ++ + L ++ V + TFY Sbjct: 13 RLGALISEH--QHMPGALMPLLHAIQDNIGYVPESSYSQIGKALSLSVAEVHGVVTFYHH 70 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+ G R +Q+C C G E L + ++ SD ++ E V C G C Sbjct: 71 FRTHKPG-RHVMQICRAESCQSMGSEALEAHAKKCLNVDYHQTTSDDAITLEAVYCLGNC 129 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P VM+ ++ Y ++ E L+ +I Sbjct: 130 ALSPAVMMDEEVYGRVSAEDLDALIAEARA 159 >gi|298506754|gb|ADI85477.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 191 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 8/186 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+ + + P + V + +Y A++ +L AQE G +S Sbjct: 1 MNSTDNSPGKGTPDGLAADPR-FKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA L + RV +ATFY F L G + V VC T C ++ +++ N+ Sbjct: 58 MNHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCTGTACYVKRSAEIVTRLENEF 116 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE----IIDAFSTGQ 176 K +DG L+ V C G+C AP+V++ +T TP+ ++ S + Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176 Query: 177 GDTIRP 182 +T+RP Sbjct: 177 AETVRP 182 >gi|315185456|gb|EFU19227.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta thermophila DSM 6578] Length = 164 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 5/141 (3%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ YPP R ++ +L Q+ ++ +E VA L + + I + Sbjct: 1 MAHIDRPWKAYPPRR--DNLLLILHDIQDHNPRNYLPDEEVEEVARYLGIPVSELDGIIS 58 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY+ F P G R +++C + C L G L + + K DG + E V C Sbjct: 59 FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117 Query: 141 QGACVNAPMVMIGKDTYEDLT 161 G C P +M+ + + +T Sbjct: 118 LGCCDKGPSLMVNDELHTRMT 138 >gi|332295876|ref|YP_004437799.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium narugense DSM 14796] gi|332178979|gb|AEE14668.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium narugense DSM 14796] Length = 156 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + V+ I ++ ++I +L QE G++ + +A L+++ ++ + TF Sbjct: 5 NFPAVDREIKKW--GLRSESLIQILHGTQESIGYLPEEILSYIAEKLNISLSKIYGVVTF 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+L+ + C T C ++G EK++ NK++ KP D + + V C Sbjct: 63 YNFFKLTKDAE-HVITTCLGTACYVKGGEKILNALCNKLNIKPNEITKDNKFTVKTVRCV 121 Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 G C AP+++I D Y L+ EI++ + Sbjct: 122 GCCGFAPVMIIDGKDIYGKLSENEAIEILERY 153 >gi|326561570|gb|EGE11911.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 46P47B1] Length = 169 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHYYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|262275221|ref|ZP_06053031.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia hollisae CIP 101886] gi|262220466|gb|EEY71781.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia hollisae CIP 101886] Length = 171 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 3/166 (1%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 + +++ + V E I+ A++P+L Q +V AA+ ++A L+++ V Sbjct: 9 ALTDQERVVVAEAINTLKT--KPGALLPILHEIQHHLSYVPPAAVPMIARGLNLSNADVH 66 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY +F+ P G+ +Q+C C G + L +++ D + E Sbjct: 67 GVISFYHEFRNQPPGS-HVIQICRAESCQSMGSQTLERHAFSRLGIGFHETTKDKNFTLE 125 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 V C G C+ +P V +G D + D+ + + ++++ T + P Sbjct: 126 PVYCLGNCMYSPCVRVGDDIHGDMNDDAFDSLVNSLITQVVEVKAP 171 >gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis] gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis] Length = 190 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 2 SVRR----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57 S+RR A + F F++E+ V +++ YP + Q A++PLL AQ Q GW+ Sbjct: 26 SMRRRSKLDACNMYDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLP 85 Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 +A+ VA +L + ++ E A +YT F + P G V VC +TPC LRG + L++ C Sbjct: 86 ISAVVAVAEVLKIDPMQAYETAKYYTMFHMKPRGM-YVVSVCTSTPCFLRGSDDLLKACS 144 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGAC 144 + +P + D S + C GAC Sbjct: 145 KMLRLEPGETSKDMQFSLKVDCCLGAC 171 >gi|148548761|ref|YP_001268863.1| formate dehydrogenase subunit gamma [Pseudomonas putida F1] gi|148512819|gb|ABQ79679.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas putida F1] Length = 160 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++R A++P+L Q + G++ A++ +A+ L+++ V + +FY F Sbjct: 11 IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG +S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + LTPERL ++++ Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156 >gi|270307596|ref|YP_003329654.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] gi|270153488|gb|ACZ61326.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS] Length = 155 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+ VI++ SR +++P L QE+ G++ A+ + L + I + + TFY Sbjct: 6 KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLGIPSIDIYGMITFY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + + G + +++C + PC L G E +++ + + +P D + E V C G Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C +P ++I Y LT + + E++D T Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|27904649|ref|NP_777775.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372476|sp|Q89AU3|NUOE_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName: Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1 subunit E gi|27904046|gb|AAO26880.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 171 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 F + + I + +I Y R S++I +L Q+ GW+S I +A IL ++ Sbjct: 14 DIKFKLTIQEKIEIFNIIKNYRTVR--SSLIEILKFVQKSYGWISNELITELACILKISK 71 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + EIATFY+Q P+G R ++ C + C + GCEK+ ++ D Sbjct: 72 CDIEEIATFYSQIFRQPIG-RNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFK 130 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + C G C +P +MI D Y ++T + +++++ Sbjct: 131 FTLLPICCLGNCDKSPTIMINDDLYSNVTEYSVIVLLESYQ 171 >gi|146341845|ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS278] gi|146194651|emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp. ORS278] Length = 158 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 A E+I+ + S+ + A +P+L QE G+V AI ++A+ L+++ V + TF Sbjct: 9 DAARGAEIIAEH--SQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEVYGVFTF 66 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ G R +++C C G + L K+ + +D ++ E + C Sbjct: 67 YHDFRGKKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLEPIYCL 125 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C AP MI L R++ ++ Sbjct: 126 GLCATAPSAMIDGRLVGRLDEARIDALVSE 155 >gi|108744328|gb|ABG02413.1| FdsG [Xanthobacter flavus] Length = 164 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 1/141 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + A +P+ QE G+V A+ ++A+ L+++ V + TFY F+ P G R Sbjct: 20 KHLEGATMPIFHALQETFGFVPDPAVPMIADSLNLSRAEVYGVLTFYHDFRREPPG-RHV 78 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V++C C G + L + K+ + ++DG ++ E + C G C AP ++ Sbjct: 79 VKLCAAEACQSVGGKALAAYAQEKLDVEMGETSADGRVTLEPIYCLGLCACAPAALVDGQ 138 Query: 156 TYEDLTPERLEEIIDAFSTGQ 176 L + ++EI D ++G+ Sbjct: 139 LMGRLDRDAIDEIADCIASGK 159 >gi|332981957|ref|YP_004463398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella australiensis 50-1 BON] gi|332699635|gb|AEE96576.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella australiensis 50-1 BON] Length = 150 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 5/151 (3%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V E+++R+ + + ++P+L+ Q + ++S ++ V+ +L + RV +ATFY+ Sbjct: 2 VEEIVNRHGIAEDK--LMPILLDIQNSNDKHYLSEDDLKQVSKLLGIPESRVYSVATFYS 59 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F L P G + VQ+C PC++ G +I+ R+ + SDG + E C G Sbjct: 60 FFSLQPRG-KYIVQICDNAPCIVNGAYNVIDDFRHILGIDMGQTTSDGLFTLEYSSCLGC 118 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C +AP I + Y DL E+++ I+ Sbjct: 119 CSHAPAARIAGELYGDLDSEKIKSILSDLRR 149 >gi|78223288|ref|YP_385035.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter metallireducens GS-15] gi|78194543|gb|ABB32310.1| tungsten-dependent benzoyl-CoA reductase-related protein bamG [Geobacter metallireducens GS-15] Length = 150 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 3/146 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 ++++I ++ S++I +L+ Q + W+ + A++ V L + R+ IATFY Sbjct: 5 RIDQIIDKH--DGEASSLIQILLDIQSEHNWLPKEALKRVCERLQVPMSRITHIATFYKA 62 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F L P G R V VC T C +RG +++++ + K +SD S E V C G C Sbjct: 63 FSLVPKG-RHQVHVCMGTACHVRGAQRVLDTVQEVTGVKSGETDSDLKFSVETVNCLGCC 121 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170 P++ + + ++ P ++ +++ Sbjct: 122 ALGPVMEVDGKHHGNIAPSQIASVLN 147 >gi|186470174|gb|ACC85637.1| HoxE [Lyngbya majuscula CCAP 1446/4] Length = 174 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 1/139 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G R Sbjct: 35 SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RH 93 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C T C +RG +K++ + DG +S C GAC AP+V+ Sbjct: 94 NCVICLGTACYVRGGDKVLAALEEQTGIHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 153 Query: 155 DTYEDLTPERLEEIIDAFS 173 T E E I + Sbjct: 154 KMAPQQTAESSVEKIKQWQ 172 >gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas testosteroni S44] Length = 721 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 4/159 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V I+++ + ++I LL Q G++ RAA+ V+A L+++ V + ++ Sbjct: 27 EREAVEHAIAKH--ASRPGSLIELLHSLQNALGFIPRAAVPVIAEALNLSRAEVHGVVSY 84 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y + P G R +Q+C C RG + L + + + ++DG+++ E V C Sbjct: 85 YPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQATLGCQAHGTSADGSVTLEPVYCL 143 Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179 G C +P VM+ + + + +T +RL+ +++ + +T Sbjct: 144 GLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 182 >gi|114765414|ref|ZP_01444529.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601] gi|114542257|gb|EAU45287.1| ATP synthase subunit E [Roseovarius sp. HTCC2601] Length = 155 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 7/153 (4%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 SE+ ++ + + ++P+L QE G V AA+ ++A L++ V + Sbjct: 8 SEDLQALIDAQMP------LEGPLLPILHAIQEAYGHVPEAALPLIAETLNLTQAEVHGV 61 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ +P G R V++C C G L + K+ +DG ++ E V Sbjct: 62 MSFYHDFRKAPAG-RHVVKICRAEACQSMGAGALSDAVLEKLGIGWGGTTADGRVTVEAV 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C AP MIG R++ ++ Sbjct: 121 YCLGLCACAPAAMIGDRLIGRADAARIDAELEG 153 >gi|301058585|ref|ZP_07199590.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] gi|300447317|gb|EFK11077.1| putative NDH-1 subunit E [delta proteobacterium NaphS2] Length = 161 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + S + ++ YP R + + L QE + WV+ + VA +L+MA + Sbjct: 1 MAISPHEQREIEALLRIYPTRRAVA--LEALKIVQEPKKWVTDEDLRDVAALLEMAPAEL 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG +++C C + G L E + P D +W Sbjct: 59 DSLATFYSQIFRRPVGE-HVIRLCDGVSCWIMGETGLEERLSRLLSIGPGETTPDRRFTW 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C G C AP +MI D Y + PE L+ I++ ++ Sbjct: 118 LPVSCLGVCEQAPAIMIDDDLYTRIQPEDLDAILERYA 155 >gi|119489275|ref|ZP_01622082.1| ATP synthase subunit E [Lyngbya sp. PCC 8106] gi|119454749|gb|EAW35894.1| ATP synthase subunit E [Lyngbya sp. PCC 8106] Length = 176 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 Q A+I +L +AQE G++ + VA L + +V +ATFY F L P G R Sbjct: 37 SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RH 95 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C T C +RG +K++ + DG +S C GAC AP+V+ Sbjct: 96 NCVICMGTACYVRGGDKVLAAIEEQTGVHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 155 Query: 155 DTYEDLTPERLEEIIDAFST 174 T E E I + Sbjct: 156 KMAPQQTAESSVEKIKEWQA 175 >gi|163760123|ref|ZP_02167206.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43] gi|162282522|gb|EDQ32810.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43] Length = 159 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +++R + ++ +L QE G V ++A+ V+A L+++ V Sbjct: 6 LDAEIASTTQAIVAR--SKALEGPLLTILHDVQEAFGHVPQSALPVIAEGLNLSRAEVHG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + +FY ++ +P G R +++C C G ++L E + ++DG ++ E Sbjct: 64 VVSFYHDYREAPAG-RHVIKLCRAEACQSMGGDELAERLMGLLGLDWHETSADGAVTLEP 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 V C G C AP M+ + L + + E+ Sbjct: 123 VYCLGLCACAPAAMVDGEVLGRLDADAVSEL 153 >gi|114566321|ref|YP_753475.1| NADH dehydrogenase I subunit E [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337256|gb|ABI68104.1| NADH dehydrogenase I chain E [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++I+ Y + +I Q + ++ + A+ A + ++ + +ATFY+ Sbjct: 5 QDIIANYKD--KKGGIIEAYHALQREFNYIPQKAVAEAARVFGVSEAQAYGVATFYSYLS 62 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + G + +++C + PC + G +K+++ + + K +DG + E EC G C Sbjct: 63 VEKRG-KYIIRMCESAPCHVAGADKVLKAMEDYLGIKVGETTADGKFTLELCECVGQCQA 121 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 P++ + +++ E++ EI+ A+ Sbjct: 122 TPVITVNSQPVFNVSSEKIPEILSAYK 148 >gi|218782890|ref|YP_002434208.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218764274|gb|ACL06740.1| 2Fe-2S family protein similar to NADH:ubiquinone oxidoreductase (NuoE) [Desulfatibacillum alkenivorans AK-01] Length = 156 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + +++ Y ++ ++ + +V I V+ L ++ + +ATFY Sbjct: 10 KITKIVQDYNSD--PECLLMIMQDISDIYNYVPPEVIPVLVEKLGVSESLIYSVATFYKT 67 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 L P G + + VC T C +RG EK+ ++ + +DG + + V C GAC Sbjct: 68 ISLEPRG-KYIINVCTGTACHVRGAEKITNALAEELGIEEGQTTADGMFTLDAVRCVGAC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + P+ M+ DT+ L E++D + Sbjct: 127 ASGPVAMVNHDTHGALNRSSALEMLDQYRK 156 >gi|39997816|ref|NP_953767.1| bidirectional hydrogenase complex protein HoxE [Geobacter sulfurreducens PCA] gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, putative [Geobacter sulfurreducens PCA] Length = 191 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 8/186 (4%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+ + + P + V + +Y A++ +L AQE G +S Sbjct: 1 MNSTDNSPGKGTPDGLAADPR-FKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA L + RV +ATFY F L G + V VC T C ++ +++ N+ Sbjct: 58 MTHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCTGTACYVKRSAEIVTRLENEF 116 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE----IIDAFSTGQ 176 K +DG L+ V C G+C AP+V++ +T TP+ ++ S + Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176 Query: 177 GDTIRP 182 +T+RP Sbjct: 177 AETVRP 182 >gi|167032815|ref|YP_001668046.1| formate dehydrogenase subunit gamma [Pseudomonas putida GB-1] gi|166859303|gb|ABY97710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida GB-1] Length = 160 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++R A++P+L Q G++ AA+ +A+ L+++ V + +FY F Sbjct: 11 IQRILAR--DKATPGALLPILHAIQHDIGYIPDAAVPEIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG +S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + LTPERL +++ Sbjct: 128 CSPALELDGQVHARLTPERLRALVNGCRE 156 >gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E subunit [Nostoc sp. PCC 7422] Length = 170 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ + R+ Q A+I +L +AQE G++ + +A L + RV +A Sbjct: 19 DKRFKILDATMKRH--QYQQDALIEVLHKAQELFGYLENDLLHYIAQSLKLPPSRVYGVA 76 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P GT V VC T C ++G E L+ LS Sbjct: 77 TFYHLFSLAPKGTHTCV-VCTGTACYVKGAENLLTTVEKCAKVHVGETTPSSELSLLTAR 135 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C GAC AP V+ TPE + E I+ + Sbjct: 136 CLGACGIAPAVVFDGTVCGHQTPELVTEQIEKW 168 >gi|313673508|ref|YP_004051619.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component subunit hoxe [Calditerrivibrio nitroreducens DSM 19672] gi|312940264|gb|ADR19456.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Calditerrivibrio nitroreducens DSM 19672] Length = 164 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 1/140 (0%) Query: 34 PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93 ++I +L QE G++ A++ V+ L++ Y R +ATFY F L P G Sbjct: 23 KNGYNPDSLIEVLHAVQEYFGYIDEDALKFVSESLNIPYSRAYSVATFYHYFTLKPQGEH 82 Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 V VC T C ++G +L+ +N DG +S C GAC AP+V++ Sbjct: 83 ICV-VCTGTACYIKGANQLLAHLKNHHDLSDGDTTKDGKVSLLTARCVGACSLAPVVVVD 141 Query: 154 KDTYEDLTPERLEEIIDAFS 173 ++ E+L+++I Sbjct: 142 NKILGEINSEKLDDVIKGCR 161 >gi|222053344|ref|YP_002535706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221562633|gb|ACM18605.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 150 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++++I + S++I +L+ Q + W+ + +E V+ L++ ++ I TF Sbjct: 2 DRDRIDQIIDTHGC--KASSLIQILIAIQSENHWLPKEVLERVSERLNVPMNQIQHITTF 59 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F L P G R V VC T C +RG + +++ + KP + D S E V C Sbjct: 60 YKSFSLVPKG-RHEVHVCMGTACHVRGAQGVLDTVEDVTGIKPGETDVDLKFSLETVNCI 118 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P++++ D + +L ++E+++ + Sbjct: 119 GCCALGPVMVVDGDYHGNLAATQVEDVLKTY 149 >gi|254483036|ref|ZP_05096271.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] gi|214036721|gb|EEB77393.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [marine gamma proteobacterium HTCC2148] Length = 152 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 3/154 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ +Y + ++PLL QE G+V +I +A +++++ V + +FY Sbjct: 2 LAQLLCQYENT--PGGLLPLLHAVQEDLGYVPPESIPAIAEVMNLSAAEVHGVISFYHDL 59 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + SPVG R +QVC C G L + ++ DG+++ E+V C G C Sbjct: 60 KTSPVG-RHTLQVCAAESCQAAGGRALEHAAQEQLGIGFGETTDDGSVTLEKVYCLGNCA 118 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +P V I +TY L L +I G+G + Sbjct: 119 CSPSVRIDNETYARLDATGLTALIANIGQGEGAS 152 >gi|169351258|ref|ZP_02868196.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552] gi|169292320|gb|EDS74453.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552] Length = 163 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E ++E+++++ + ++ L Q+ G++ A+E ++ +++ +V Sbjct: 3 KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQDSLGYIPFEAMEKISKAINVPVSKVY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+QF P G + + VC T C + G + ++++ + + DG S + Sbjct: 61 GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 119 Query: 137 EVECQGACVNAPMVMIGKDTYE 158 C GAC AP+V + + Sbjct: 120 ATRCVGACGLAPVVSVDGTVFG 141 >gi|220931144|ref|YP_002508052.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] gi|219992454|gb|ACL69057.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168] Length = 136 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%) Query: 43 IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102 + L QE G++S I ++ M R+ + FY+ F PVG + V+VC + Sbjct: 7 LERLHNIQETYGFISEGEIRKLSQEYKMPRARIYGVIRFYSMFYTEPVG-KYIVRVCDSL 65 Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162 C + E ++EV ++ + K D + E VEC G C P++M+ Y ++P Sbjct: 66 SCHINDSEGIVEVVKDYLGIKNGETTEDKKFTLEVVECLGHCGEGPVMMVNDRIYTRVSP 125 Query: 163 ERLEEII 169 EI+ Sbjct: 126 NMALEIL 132 >gi|320354166|ref|YP_004195505.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Desulfobulbus propionicus DSM 2032] gi|320122668|gb|ADW18214.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxE [Desulfobulbus propionicus DSM 2032] Length = 166 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++ I R+ A+I L AQE G++ R + +A L + RV +ATF Sbjct: 14 QRQAIDRTIHRH--DFRPDALIETLHTAQETLGYLDRDTLAYIAEKLKIPPARVFGVATF 71 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+L P G + VC T C ++G ++++ + H +P D LS EV C Sbjct: 72 YNHFRLKPKGN-HTLAVCTGTACHVKGNDQILAWLGEQYHLRPGETTPDNHLSLVEVRCV 130 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 GAC AP+++ + + +I + Sbjct: 131 GACALAPVIVSDGELIGKKNFDEAIRLIKEW 161 >gi|254445571|ref|ZP_05059047.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Verrucomicrobiae bacterium DG1235] gi|198259879|gb|EDY84187.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Verrucomicrobiae bacterium DG1235] Length = 160 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 E+ + I +YP QSAV+PLL Q+ +G ++ A E VA L +A I V Sbjct: 1 MDLKPETLAEIEAAIPKYPE--KQSAVMPLLHAIQKDQGTLTNEAAEWVAEKLGIAPINV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 L + +FY F+ +G R ++VC T C + G K+ + + + + DG ++ Sbjct: 59 LSVISFYPFFRQHQIGKRH-IRVCRTLSCAMAGGAKVCDRMLKEFETELNGVSPDGEVTV 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 E EC +C +AP++++ ++ +E+L + +EI D Sbjct: 118 EFAECLASCGSAPVMLVDEELHENLDEAKAKEICDKIKA 156 >gi|188995983|ref|YP_001930234.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931050|gb|ACD65680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 156 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 1/141 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 ++ IPLL Q G++ +E++A L+++ + + TFY+ F+ G + ++ Sbjct: 14 KKNGFIPLLHSIQNHYGYIPIEFVEILAKRLNLSKAEIWGVITFYSDFKTKKPG-KNIIK 72 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C+ G ++ + ++K++ DG + EEV C G C P VMI Y Sbjct: 73 VCRSESCIANGGLEIQKYLKSKLNINFKETTEDGKFTLEEVFCFGNCGCGPSVMINNKLY 132 Query: 158 EDLTPERLEEIIDAFSTGQGD 178 ++ ++LEE++ S + + Sbjct: 133 GRVSLKKLEELLKNLSGDKNE 153 >gi|121609342|ref|YP_997149.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter eiseniae EF01-2] gi|121553982|gb|ABM58131.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter eiseniae EF01-2] Length = 156 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E + ++ ++P+L Q+ G + A+ ++A L+++ V Sbjct: 2 LTESQQQIIQTIVD--GKKHLPGGLLPMLHDIQDALGHIPAPALGLIAQELNLSRAEVHG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFY F+ P G + VQ+C C G +KL E ++++ +DG ++ E Sbjct: 60 VVTFYHFFRHEPAG-KQVVQICRAEACQSMGADKLWEHACSRLN-TQGGTTADGAVTLEP 117 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C ++P +++ + + + + + ++ A Sbjct: 118 VYCLGLCSSSPAMVVDEQLHARVDTVKFDRLVAA 151 >gi|316932166|ref|YP_004107148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] gi|315599880|gb|ADU42415.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] Length = 156 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + +E+I+ + A + +L QE G+V + A ++A L+++ V Sbjct: 1 MQYEPWETARASEIIA--GLTHKDGATLLMLQALQEAFGYVPQDAEPMIAQALNLSRAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY F+ P G R +++C C G + L+ ++ +DG ++ Sbjct: 59 HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 E C G C AP MI + L +L+ ++ Sbjct: 118 EPAYCLGLCATAPSAMINERVVGRLDAGKLDALL 151 >gi|148254530|ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1] gi|146406703|gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1] Length = 158 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+ + S+ + A +P+L QE G+V AI ++A L+++ V + TFY F+ Sbjct: 15 EIIAEH--SKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEVYGVFTFYHDFRA 72 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G R +++C C G + L K+ + +D ++ E + C G C A Sbjct: 73 KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLEPIYCLGLCATA 131 Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171 P M+ L R++ ++ Sbjct: 132 PSAMLDGRLVGRLDEARIDALVSE 155 >gi|50083952|ref|YP_045462.1| NADH dehydrogenase subunit E [Acinetobacter sp. ADP1] gi|49529928|emb|CAG67640.1| NADH dehydrogenase I chain E [Acinetobacter sp. ADP1] Length = 170 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PVG Sbjct: 33 YPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQMLSISVADLEGVATFYNRIYRQPVG- 89 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + +C + C L G E L E + ++ + +DG + + C G C P +MI Sbjct: 90 RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPTLMI 149 Query: 153 GKDTYEDLTPERLEEIIDAF 172 +DT+ + ++++++ + Sbjct: 150 DEDTHGLVDVSSVKQLLEKY 169 >gi|46446197|ref|YP_007562.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus Protochlamydia amoebophila UWE25] gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus Protochlamydia amoebophila UWE25] Length = 159 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 YP R SA+IP L AQ ++G++ +A + D+ V I TFY F PVG Sbjct: 5 YPNKR--SALIPALHLAQAEKGYLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVG- 61 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + VC CMLRG + + K+H P DG + EC AC AP++++ Sbjct: 62 KHVIHVCKNISCMLRGADGFLARLCQKMHISPGETTQDGEFTVIASECLAACDKAPVMIV 121 Query: 153 GKDTYEDLTPERLEEIIDA 171 + ++++ I Sbjct: 122 DDKVIGPVEITQIDDYIQK 140 >gi|301062487|ref|ZP_07203133.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300443417|gb|EFK07536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 155 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++ Y R S +IP+L AQ GW+ R ++++A+ L + V +A+FY Sbjct: 7 EAALKNILVFYEGKR--SELIPILQEAQGINGWLPREVMQLIADFLHINEGEVHSVASFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+L P+G + V VC T C +RG +++ + K + D + E V C G Sbjct: 65 NQFRLMPLGRK-MVTVCRGTACHIRGAPQILVDIGQSLRLKEGETSPDLEYTLESVACIG 123 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V + + ++T ER + S Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKLSE 155 >gi|78221379|ref|YP_383126.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] gi|78192634|gb|ABB30401.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15] Length = 173 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L + ++V E+ATFY PVG R V V Sbjct: 21 REAAVDVIKELQRHYGWLTDEAVAEAAGLLGLTPLQVEELATFYEMIYRRPVGKR-VVHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E L+ K+ +P +DG + C G C AP +MIG Y Sbjct: 80 CDSISCWAMGGESLMAHLAAKLGVEPGGTTADGMFTLLPCCCLGNCGEAPTLMIGDTLYG 139 Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGP 184 +TPER EEI+ T+ GP Sbjct: 140 RVTPERGEEILSNARET-AATVPEGP 164 >gi|73748097|ref|YP_307336.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147668875|ref|YP_001213693.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|289432123|ref|YP_003461996.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146269823|gb|ABQ16815.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|288945843|gb|ADC73540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 155 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+ VI++ SR +++P L QE+ G++ A+ + L + I + + TFY Sbjct: 6 KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + + G + +++C + PC L G E +++ + + +P D + E V C G Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLELVPCLG 122 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C +P ++I Y LT + + E++D T Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|104780975|ref|YP_607473.1| formate dehydrogenase subunit gamma [Pseudomonas entomophila L48] gi|95109962|emb|CAK14667.1| putative formate dehydrogenase, gamma subunit [Pseudomonas entomophila L48] Length = 161 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + V++R A++P+L Q G + AA+ +A+ L+++ V + +FY F Sbjct: 11 IQRVLAR--EKHTPGALLPVLHAIQAGIGHIPDAAVGEIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ + DG LS V C GAC Sbjct: 69 RTTPP-ARHTLRLCRAESCQSRGAEALAAQLREQLGLDDHGTSEDGALSLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 +P + + + +TPERL ++ G Sbjct: 128 CSPALELDGQLHARVTPERLRALVAGCREG 157 >gi|57235005|ref|YP_180895.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 155 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+ VI++ SR +++P L QE+ G++ A+ + L + I + + TFY Sbjct: 6 KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + + G + +++C + PC L G E +++ + + +P D + E V C G Sbjct: 64 SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C +P ++I Y LT + + E++D T Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154 >gi|70733836|ref|YP_257476.1| formate dehydrogenase subunit gamma [Pseudomonas fluorescens Pf-5] gi|68348135|gb|AAY95741.1| formate dehydrogenase, gamma subunit [Pseudomonas fluorescens Pf-5] Length = 158 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++ R+ S A++P+L + QE+ G++ AI +A+ L+++ V + +FY F Sbjct: 11 IHRLLERHKDS--PGALLPILHQIQEELGYIPDPAIPEIAHSLNLSQAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E+L R ++ ++DG +S V C GAC Sbjct: 69 RSAPP-ARHILRLCRAESCQSRGAEQLAAQLRERLQLDDHGSSADGNISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + L+ ERL+ ++D+ Sbjct: 128 CSPALELDGQLHARLSAERLDALLDSCRE 156 >gi|282895631|ref|ZP_06303756.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis brookii D9] gi|281199325|gb|EFA74190.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis brookii D9] Length = 170 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ I R Q A+I +L RA E G++ + +A L + RV +A Sbjct: 16 DKRLRMLDTAIKR--CQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVA 73 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P G V VC T C ++G + ++ I K DG +S Sbjct: 74 TFYHLFSLAPKGKHNCV-VCTGTACYVKGSQAILTALETFIQIKAGDTTPDGEVSVMTAR 132 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C GAC AP V+ + + T + + + + + G Sbjct: 133 CLGACGIAPAVVFDGEVLGNQTAQSVCKKVGEWQHG 168 >gi|192289231|ref|YP_001989836.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris TIE-1] gi|192282980|gb|ACE99360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris TIE-1] Length = 156 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + +++I+ + + A + +L Q+ G+V A ++A L+++ V Sbjct: 1 MQYEPWEPARASDIIA--GLTHKEGATLLMLQALQQAFGYVPPDAEPMIAQALNLSRAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY F+ P G R +++C C G + L+ ++ +DG ++ Sbjct: 59 HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 E C G C AP MI + L +L+ ++ Sbjct: 118 EPAYCLGLCATAPSAMINERVVGRLDAGKLDALLAE 153 >gi|282899669|ref|ZP_06307633.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195548|gb|EFA70481.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 170 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ ++ I R Q A+I +L RA E G++ + +A L + RV +A Sbjct: 16 EKRLRMLDTAIKR--CQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVA 73 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P G V VC T C ++G ++++ I K DG +S Sbjct: 74 TFYHLFSLAPKGKHNCV-VCTGTACYVKGAQEILTTLETFIQIKAGDTTPDGEVSLMTAR 132 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C GAC AP V+ + + T + + + + + G Sbjct: 133 CLGACGIAPAVVFDSEVLGNQTAQSVCKKVGEWQHG 168 >gi|300023971|ref|YP_003756582.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525792|gb|ADJ24261.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 176 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 8/173 (4%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 + E P++ I + +R+ ++ + Q G+V + ++A Sbjct: 12 DTKPEITPTTPV-----QIAAAAICARH--GNKPDELLEIFHEMQHDLGYVPEETLPIIA 64 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 L+ + + + TFY +F PVG + V++C C G ++L + +K++ Sbjct: 65 KALNRSRAEIYGVLTFYHEFHRHPVG-KHVVKICRAEACQSMGTDELCQHAESKLNVPLG 123 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 +DG ++ E+V C G C +P VM+G+ Y + P+R +EII + Sbjct: 124 GTTADGAVTIEQVFCLGNCALSPAVMVGEKLYGRVDPKRFDEIIAGLEKEAAE 176 >gi|302391062|ref|YP_003826882.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501] gi|302203139|gb|ADL11817.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501] Length = 163 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 7/158 (4%) Query: 20 EESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 EE+ + +++ Y ++ + +IP+L Q++ ++ ++ VA + ++ +V Sbjct: 9 EENLNKYLEPLFKILDGY--AKEEKNLIPILQDVQDEYDYLPEPVLKEVATEIGLSASQV 66 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+QF L P G ++VC T C +RG E ++ ++ + + + Sbjct: 67 YGVATFYSQFHLEPRGD-NIIRVCMGTACHVRGAENILNKIEEELEIEEGETTENLEFTL 125 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 E V C GAC AP++MI DT+ LTP+R+ E++ + Sbjct: 126 ESVACIGACGLAPVIMINDDTHGRLTPDRVPEVLAQYQ 163 >gi|119475814|ref|ZP_01616166.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143] gi|119450441|gb|EAW31675.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143] Length = 200 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ + ++ + A++P+L Q + G + + +A++ +++ V + +FY Sbjct: 47 ATISRIARKHLD--QEGALLPVLHSIQTEFGHIPPDCVGQIADLFNVSAAEVHGVLSFYP 104 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ +P G R +Q+C C G L + + ++DG + E V C G Sbjct: 105 FFRSTPPG-RHTIQICRAEACQSMGSRLLERHAKLTLGIDFHQTSADGEFTLEPVYCLGN 163 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C +P + +G + + R + +ID T Sbjct: 164 CACSPSIRVGTQIFSHVDSARFDALIDDLQT 194 >gi|293609136|ref|ZP_06691439.1| predicted protein [Acinetobacter sp. SH024] gi|292829709|gb|EFF88071.1| predicted protein [Acinetobacter sp. SH024] gi|325121084|gb|ADY80607.1| NADH dehydrogenase I chain E [Acinetobacter calcoaceticus PHEA-2] Length = 169 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L M+ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|152996298|ref|YP_001341133.1| formate dehydrogenase subunit gamma [Marinomonas sp. MWYL1] gi|150837222|gb|ABR71198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Marinomonas sp. MWYL1] Length = 165 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +I + A++PLL Q++ ++ A+ ++A L ++ V + +FY F+ Sbjct: 15 QAIIEEFKA--KPGALLPLLHAIQDRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFR 72 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 G R V+VC C G L ++ + + +D ++ E V C G C Sbjct: 73 TKQPG-RHVVEVCRAEACQAVGARHLEAYAKSILDVQYHQTTADNNITLEPVYCLGNCSC 131 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 P V +G + Y ++ +R +E+I++ T + + Sbjct: 132 GPSVRVGDEIYAEVDTQRFDELIESLKTERLEV 164 >gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor [Candidatus Kuenenia stuttgartiensis] Length = 152 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 30 ISRYPP--SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 + +Y + A IP+L QE+ G++ ++ V ++ + +ATFY QF+L Sbjct: 6 VKKYLEICGNTKEASIPILQSIQEEYGYLPLDVLDQVCEESEITKSHLYGVATFYAQFKL 65 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 +P G R ++VC T C ++G + I ++++ DG S E V C G C A Sbjct: 66 TPKG-RNAIKVCKGTACHVKGADITIVAMKDQLGIDIDQTTEDGAFSMETVACLGCCSLA 124 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172 P++MI +D + + ++ + + Sbjct: 125 PVIMINEDVFGGFSSAKVRGTLKKY 149 >gi|148262415|ref|YP_001229121.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] gi|146395915|gb|ABQ24548.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4] Length = 157 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+E A +L ++ ++V E+ATFY PVG R + Sbjct: 21 REAAVDVMKELQRHYGWLTDEAVEEAAALLGLSTLQVEELATFYEMIYRRPVGRR-VIHA 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E ++ + +P DG + C G C + P +MIG Y Sbjct: 80 CDSISCWAVGGEHMMAQLARHLGIEPGETTKDGMFTLLPCCCLGNCGDGPAMMIGDTLYG 139 Query: 159 DLTPERLEEIIDA 171 LT E+LEEI+ Sbjct: 140 RLTAEKLEEILAQ 152 >gi|170720891|ref|YP_001748579.1| formate dehydrogenase subunit gamma [Pseudomonas putida W619] gi|169758894|gb|ACA72210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida W619] Length = 160 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++SR+ + A++P+L QE G++ AA+ +A+ L+++ V + +FY F Sbjct: 11 IQSILSRHQDT--PGALLPILHAVQESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG +S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGSEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P + + + LTPERL +++ Sbjct: 128 CSPALELDGQVHARLTPERLRSLVNG 153 >gi|77917823|ref|YP_355638.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] gi|77543906|gb|ABA87468.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 162 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 SE+ + + P R V+ +L Q+ GWVS +E+ A IL ++ ++V E Sbjct: 5 LSEKQIAQLKRRVKETPHPRE--MVLDVLHAIQDANGWVSDEGVELAAIILGLSPLQVEE 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 IATFY + PVG + + VC + C RG E L+ + + P +DG + Sbjct: 63 IATFYDKIYRCPVGRK-VIHVCDSICCWSRGGEALMLRLQQLLGIAPGETTADGMFTLLP 121 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C GAC AP V IGK Y + E+LE I+D+ T Sbjct: 122 TCCLGACGEAPAVRIGKTLYGQVALEQLESILDSERT 158 >gi|332715499|ref|YP_004442965.1| NAD-dependent formate dehydrogenase subunit gamma [Agrobacterium sp. H13-3] gi|325062184|gb|ADY65874.1| NAD-dependent formate dehydrogenase gamma subunit [Agrobacterium sp. H13-3] Length = 178 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + A V +I + ++P+L R QE+ G+V + +V+A L+++ V + Sbjct: 27 ADEATRVQAIID--DCLHMEGPMLPILHRVQEEFGYVPDSVKQVIALALNVSRAEVHGVV 84 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C GCE L + + K+ DG+++ E V Sbjct: 85 SFYPDFRDHP-GGRHVLKLCRAEACQSMGCESLADTIKGKLGLDWHQTAKDGSVTLEPVF 143 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP +M+ + + + L +I+ Sbjct: 144 CLGLCAQAPALMLDGEVHARVDEHCLGDILAEVRR 178 >gi|308272724|emb|CBX29328.1| hypothetical protein N47_J03090 [uncultured Desulfobacterium sp.] Length = 168 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EES + E + Y R + +IP+L AQ G++ AI+++A+ + + V +A Sbjct: 13 EESGGALKETLEFYSGKRNE--LIPILQEAQGIYGYLPEDAIKIIADFIKITIGEVYSVA 70 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY QF+L P+G R V +C T C +RG ++++ ++ K + D + E V Sbjct: 71 SFYNQFRLIPLG-RNTVTICRGTACHIRGAPQIVDEIGKVLNLKEGETSEDMEYTLETVA 129 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C AP V I + L P + + + + Sbjct: 130 CIGCCALAPCVKINHKIHGCLEPGQAKGLFN 160 >gi|237734767|ref|ZP_04565248.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|229382095|gb|EEO32186.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 160 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E ++E+++++ + ++ L Q + G++ A+E ++ + + +V + Sbjct: 3 QEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVYGVV 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF P G + + VC T C + G + ++++ + + DG S + Sbjct: 61 TFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATR 119 Query: 140 CQGACVNAPMVMIGKDTYE 158 C GAC AP+V + + Sbjct: 120 CVGACGLAPVVSVDGIVFG 138 >gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 638 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYT 83 + EVI+ + + ++ +L + G +S + VA +++ V FYT Sbjct: 37 IQEVINN--RGKAREHLMAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVAGFVGFYT 94 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P + ++VC + PC + G + + + P +DG E EC G Sbjct: 95 MFSTRPR-AKFLIRVCKSGPCHVMGARTIFDYVEKHLGISPGQTTADGLFHLEACECLGI 153 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQI-DRISSAPAGGLT-SL 200 C AP +MI D + +LT ER+ I+D + + + GP++ R+ G T L Sbjct: 154 CSVAPAMMINYDLHGNLTEERIATILDGYRSREPFFGEACGPEVEGRVCMLDEPGQTQRL 213 Query: 201 LDN 203 + Sbjct: 214 TEK 216 >gi|302344256|ref|YP_003808785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] gi|301640869|gb|ADK86191.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus baarsii DSM 2075] Length = 170 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 2/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 ++++I + ++ +I +L ++ ++ A+ ++ L ++ + EI TF Sbjct: 20 DYQELDDLIFQRSGGDKEN-LIMILQAISKRYNYLPLPALRYLSAKLGVSMSGIYEIVTF 78 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ F L P G R + VC T C +RG E++ + + + K +D + E V C Sbjct: 79 YSMFCLEPRG-RNIISVCLGTACHVRGAERIKQSVEDYLGIKAGETTADFKFTLETVRCI 137 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C P+V+I + + +T +++ + + Sbjct: 138 GCCSLGPVVVIDEKYHGGMTSDKMLNTLKEMA 169 >gi|219851496|ref|YP_002465928.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula palustris E1-9c] gi|219545755|gb|ACL16205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula palustris E1-9c] Length = 162 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 18/163 (11%) Query: 22 SAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++++I+RY P R V+ +L Q QEG++ R +E ++ LD+ + + Sbjct: 2 EEQVLDQIIARYASPTGR----VLGILSEVQHQEGYIPRDVLETLSQKLDLPLSDLYSLV 57 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----------RNS 129 TFY F L PVG + VC T C ++G L+E ++ +H + Sbjct: 58 TFYALFSLKPVGE-HVITVCMGTACHVKGAVSLLETLQDLLHLE-GEAADEDGKFSLTTE 115 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 D + E C GAC AP++ + + Y +TPE L I++ + Sbjct: 116 DNRFTLEIARCFGACSIAPVLRVDGNLYGYVTPESLPGILEGY 158 >gi|253998888|ref|YP_003050951.1| formate dehydrogenase subunit gamma [Methylovorus sp. SIP3-4] gi|253985567|gb|ACT50424.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp. SIP3-4] Length = 156 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E A ++ I+ + PLL Q+ G+V + ++ L+++ + + Sbjct: 3 PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ P G R +Q+C C G +L + + SDG+++ E V Sbjct: 61 TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + ++ Y ++P+RL+ II Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAE 151 >gi|148259852|ref|YP_001233979.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Acidiphilium cryptum JF-5] gi|326403220|ref|YP_004283301.1| putative formate dehydrogenase gamma subunit [Acidiphilium multivorum AIU301] gi|146401533|gb|ABQ30060.1| formate dehydrogenase gamma subunit [Acidiphilium cryptum JF-5] gi|325050081|dbj|BAJ80419.1| putative formate dehydrogenase gamma subunit [Acidiphilium multivorum AIU301] Length = 157 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 P +++E VI Y + ++P+L QE G++ R A ++A++L++ Sbjct: 1 MDPKPAEWNDE---AARAVIRDYLGE--EGPLLPILHALQENFGFIPREAEPLIADMLNI 55 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 V + +FY F+ +P G R +++C C G E + + + D Sbjct: 56 TRAEVHGVISFYHDFRRAPAG-RHVLKLCRAEACQSMGSEANARRLLDALGLEWGGTTPD 114 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G ++ E V C G C AP + + LE ++ Sbjct: 115 GRITVEAVYCLGLCATAPSALFDDEPVGRADAATLEALVAE 155 >gi|297569385|ref|YP_003690729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925300|gb|ADH86110.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio alkaliphilus AHT2] Length = 206 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 7/188 (3%) Query: 1 MSVRRLAEEEFQ--PSSFSFSEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56 M LAE+ P + + W V + R +I L Q G++ Sbjct: 22 MGKHALAEKNMPSAPRPVTNTAADKRWRPVEAAMRR--NGYRAGGLIEALHAVQRAYGYI 79 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 AA+ + L + ++ + TFY F L P G R VC T C ++G ++L++ Sbjct: 80 DEAAMRAIGAALQLPLSKIYGVVTFYHFFHLKPKG-RHTCVVCLGTACYIKGADRLLQTI 138 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + P +DG LS C GAC AP V+I + + ++ Sbjct: 139 SREQQVSPGETTADGRLSLLTARCVGACGQAPAVVIDDQVVGQAEESAIHRQLAGLNSAG 198 Query: 177 GDTIRPGP 184 + P Sbjct: 199 PGSDEEQP 206 >gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Stappia aggregata IAM 12614] Length = 626 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 SA ++ + +++ + + ++ +L Q++ ++ A ++ +A + I V +A+F Sbjct: 22 SAEEIDAICAQFGNDKHR--MLDILREVQDRYRCIAPATMDHIAAATGLTRIEVEGVASF 79 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y+ L+P G R +++C G ++ +++ K ++DG S E C Sbjct: 80 YSFLSLTPKG-RVTIRLCDDIVDRFSGLSEVACAFEDELGLKVGETSNDGAFSLEYTPCI 138 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-PAGGLTSL 200 G C AP M+ LTPE A G+ DR + P+ + Sbjct: 139 GMCDQAPAAMVNDIVLTKLTPETARSAAQALKAGRSPEQL---ISDRFEALTPSERALHM 195 Query: 201 LDNNSKKRGK 210 +DNN + G+ Sbjct: 196 VDNNIRHAGE 205 >gi|94265733|ref|ZP_01289470.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] Length = 200 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 4/160 (2%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 +I L Q+ G++ A+ +A L + +V + TFY F L P G R Sbjct: 30 NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 88 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 VC T C ++G +++ H K +DG LS C GAC AP V++ Sbjct: 89 SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 148 Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 E I+ G G Q SAP Sbjct: 149 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAPI 185 >gi|313200987|ref|YP_004039645.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Methylovorus sp. MP688] gi|312440303|gb|ADQ84409.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp. MP688] Length = 156 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E A ++ I+ + PLL Q+ G+V + ++ L+++ + + Sbjct: 3 PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ P G R +Q+C C G +L + + SDG+++ E V Sbjct: 61 TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + ++ Y ++P+RL+ II Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAE 151 >gi|219849355|ref|YP_002463788.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aggregans DSM 9485] gi|219543614|gb|ACL25352.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aggregans DSM 9485] Length = 173 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + + R+ +A+I +L +AQE G++S + +A L + RV +ATFY Sbjct: 22 RKILEATMKRF--QYQGNALIEVLHKAQELYGFLSPELLSEIAQRLHLPPSRVYGVATFY 79 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L+P G R VC T C +RG L+ K H + DG LS C G Sbjct: 80 HFFSLAPQG-RHSCTVCLGTACYVRGAAILLRELETLSGIKAGHTSPDGQLSLLTARCLG 138 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP V++ + L I + Sbjct: 139 ACGIAPAVVLDGEVIGHADRSDLTTRIRSL 168 >gi|254282625|ref|ZP_04957593.1| formate dehydrogenase, gamma subunit [gamma proteobacterium NOR51-B] gi|219678828|gb|EED35177.1| formate dehydrogenase, gamma subunit [gamma proteobacterium NOR51-B] Length = 154 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 +I +Y C+ A++PLL Q Q G + AAI+ +A L+++ V + +FY F+ S Sbjct: 8 IIDQYRD--CEGALLPLLHAVQAQWGHIPDAAIDPIARELNLSAAEVHGVISFYHDFKTS 65 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G VQVC C RG L ++ G ++ E V C G C P Sbjct: 66 PQGE-HLVQVCCAEACQARGSRSLESYATQRLGIDYGETTVSGRVTLERVYCLGNCACGP 124 Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171 + I D Y + + ++ Sbjct: 125 SLRIDDDVYARVDNPTFDALLAE 147 >gi|182413364|ref|YP_001818430.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae PB90-1] gi|177840578|gb|ACB74830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae PB90-1] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 10/168 (5%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 V + ++R+ + +I +L Q Q G++ R ++ L + R+ Sbjct: 67 KLDSTIRRDVQQHVARWRDE--EGNLIMILHAIQNQHGYIPREVAMELSRELGVKLARIY 124 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 E+ TFY F+L P G V VC T C L+G ++ CRN++ ++D + Sbjct: 125 EVTTFYHYFKLQPPGAHNVV-VCNGTACYLKGAGDILGECRNQLGIAEGQTSADRQFHLD 183 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 V C G C +P +++ T+ + + II+A +P P Sbjct: 184 TVRCIGCCGMSPAIVVDGKTHGRVKTSDVAGIINAVR-------KPAP 224 >gi|94272887|ref|ZP_01292198.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta proteobacterium MLMS-1] Length = 171 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 4/160 (2%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 +I L Q+ G++ A+ +A L + +V + TFY F L P G R Sbjct: 1 NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 59 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 VC T C ++G +++ H K +DG LS C GAC AP V++ Sbjct: 60 SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 119 Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 E I+ G G Q SAP Sbjct: 120 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAPI 156 >gi|260551030|ref|ZP_05825235.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp. RUH2624] gi|260405978|gb|EEW99465.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp. RUH2624] Length = 169 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSVKQLLEKY 168 >gi|215484516|ref|YP_002326751.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter baumannii AB307-0294] gi|213985764|gb|ACJ56063.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter baumannii AB307-0294] Length = 168 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 29 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 86 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 87 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 145 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 146 MIDEDTHGLVEVTSIKQLLEKY 167 >gi|195400739|ref|XP_002058973.1| GJ15322 [Drosophila virilis] gi|194141625|gb|EDW58042.1| GJ15322 [Drosophila virilis] Length = 129 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + H+QVC TTPC LRG +++++ C+ ++ D + EVEC GA Sbjct: 1 MFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTCKKQLGIGVGETTKDNKFTISEVECLGA 59 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203 CVNAPMV I D YEDLT ++ I+ + PGP+ R +S P G TSL + Sbjct: 60 CVNAPMVSINDDYYEDLTSADMQSILGDLKADK--ISPPGPRNGRFASEPKGNPTSLSEE 117 Query: 204 NSK 206 Sbjct: 118 PKG 120 >gi|169797055|ref|YP_001714848.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AYE] gi|184157032|ref|YP_001845371.1| NADH dehydrogenase subunit E [Acinetobacter baumannii ACICU] gi|213156539|ref|YP_002318200.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057] gi|239501291|ref|ZP_04660601.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB900] gi|260555653|ref|ZP_05827873.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|301347791|ref|ZP_07228532.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB056] gi|301510626|ref|ZP_07235863.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB058] gi|301595911|ref|ZP_07240919.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB059] gi|332852144|ref|ZP_08433971.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150] gi|332867543|ref|ZP_08437696.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113] gi|332872607|ref|ZP_08440575.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059] gi|169149982|emb|CAM87876.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AYE] gi|183208626|gb|ACC56024.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Acinetobacter baumannii ACICU] gi|193076537|gb|ABO11195.2| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978] gi|213055699|gb|ACJ40601.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057] gi|260410564|gb|EEX03862.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter baumannii ATCC 19606] gi|322506931|gb|ADX02385.1| nuoE [Acinetobacter baumannii 1656-2] gi|323516798|gb|ADX91179.1| NADH dehydrogenase subunit E [Acinetobacter baumannii TCDC-AB0715] gi|332729516|gb|EGJ60855.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150] gi|332733960|gb|EGJ65105.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113] gi|332739136|gb|EGJ69995.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059] Length = 169 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L E + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|71280406|ref|YP_268784.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H] gi|71146146|gb|AAZ26619.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea 34H] Length = 168 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Query: 24 IWVNEVISRYPPSR--CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + ++IS + A++P+L Q ++ + AI +VA L + + TF Sbjct: 8 KSIEQIISEIVEKKVGLPGALLPILHDIQHHFDYIPKKAIAIVAQGLQQTEAEIYGVITF 67 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y FQL+ G R +++C C G + L + ++++ D + E V C Sbjct: 68 YAHFQLNKPG-RHIIEICRGEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLEPVYCL 126 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C +P + + + Y + E+ ++ + S Sbjct: 127 GNCACSPSIKVADNVYGRMNSEKFAKLSEQLS 158 >gi|37787351|gb|AAP50519.1| Hox1E [Thiocapsa roseopersicina] Length = 164 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA+ LD+ +V +ATFY F L P G A V VC Sbjct: 33 ALIETLHSVQDAFGFLDEGSLRFVASSLDLPLSKVYGVATFYHLFALKPKGRHACV-VCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G L+E + + P D LS C GAC AP ++I D L Sbjct: 92 GTACYIKGAGGLVERLQERYDINPGETTEDDRLSLLTARCVGACGLAPAIVIDGDVLGKL 151 Query: 161 TPERLEEIIDAF 172 E L ++ Sbjct: 152 DSESLIAKLEEL 163 >gi|319795812|ref|YP_004157452.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Variovorax paradoxus EPS] gi|315598275|gb|ADU39341.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus EPS] Length = 166 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + V +V+ A++P+L Q+ G++ + +A ++++ V + T Sbjct: 14 DELAAVRQVLQERAEE--PGALLPILHDVQDALGYIPPHTVTTIAEGVNLSRAEVHGVIT 71 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 +Y F+ +P R +Q+C C G + L+ ++ + DG + E C Sbjct: 72 YYHHFRSAPA-ARHVIQICRAEACQSMGADALLAHAELRLGCSAHGHSKDGNFTLEPAFC 130 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C ++P + I ++ + +T + ++ + Sbjct: 131 LGLCASSPAMTINEEPHARMTTRSFDALVAQY 162 >gi|16330690|ref|NP_441418.1| bidirectional hydrogenase complex protein HoxE [Synechocystis sp. PCC 6803] gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 173 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ ++ + R Q A+I +L +AQE G++ + VA L + RV +A Sbjct: 20 DKRFKVLDATMKR--NQFNQDALIEILHKAQEIFGYLEEDVLLYVARGLKLPLSRVFGVA 77 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L P G V VC T C ++G L++ ++H KP DG +S Sbjct: 78 TFYHLFSLKPSGKHTCV-VCLGTACYVKGAGDLLKTLDQEVHLKPGETTEDGQMSLVTAR 136 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C GAC AP V+ E + I Sbjct: 137 CIGACGIAPAVVYDGKVLGKQNDEAVLAAI 166 >gi|71280180|ref|YP_270680.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H] gi|71145920|gb|AAZ26393.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea 34H] Length = 163 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +++ + +I ++ A++P+L Q ++ A+ ++A L+++ V + Sbjct: 5 NDKGLQQIATIIEQH--QTLPGAMLPILHAIQNDLSFIPSNALPLIAKALNVSKAEVHGV 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ G +++C C G L E + + + D + E V Sbjct: 63 ISFYHHFRTEEPGA-HVIEICRGESCQAMGSRALEENIKQNLSIDYHQTSKDRQYTLEPV 121 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P + IG D + +L ++ E+II + +T Sbjct: 122 YCLGNCACSPAMRIGDDIHGELDLQKFEQIIASLNT 157 >gi|301060420|ref|ZP_07201279.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] gi|300445474|gb|EFK09380.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta proteobacterium NaphS2] Length = 155 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++ Y R S +IP+L AQ GW+ ++++A+ L + V +A+FY Sbjct: 7 EAALKNILVFYEGKR--SELIPILQEAQGIHGWLPGKTMQLIADFLHINEGEVHSVASFY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 QF+L P+G + V VC T C +RG +++E + K + D + E V C G Sbjct: 65 NQFRLMPLGRK-MVTVCRGTACHIRGAPQILEDIGQSLRLKEGETSPDLEYTLESVACIG 123 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP+V + + ++T ER + S Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKLSE 155 >gi|169634178|ref|YP_001707914.1| NADH dehydrogenase subunit E [Acinetobacter baumannii SDF] gi|169152970|emb|CAP02016.1| NADH dehydrogenase I chain E [Acinetobacter baumannii] Length = 169 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 YP R +A + L Q + GWV A + +A +L ++ + +ATFY + PV Sbjct: 30 GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R + +C + C L G E L EV + ++ + DG + + C G C P + Sbjct: 88 G-RHVILLCDSIACFLMGAETLAEVFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 MI +DT+ + ++++++ + Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168 >gi|163846759|ref|YP_001634803.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222524573|ref|YP_002569044.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp. Y-400-fl] gi|163668048|gb|ABY34414.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus aurantiacus J-10-fl] gi|222448452|gb|ACM52718.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp. Y-400-fl] Length = 173 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + + R+ A+I +L +AQE G++S + VA L + RV +ATFY Sbjct: 22 QKILEATMKRF--QYQGDALIEVLHKAQELYGFLSPELLGEVARRLKLPPSRVYGVATFY 79 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L+P G VC T C +RG L+ + ++DG S C G Sbjct: 80 HFFSLAPQGE-HSCTVCLGTACYVRGAAILLRELEALSGVQAGRTSADGRFSLLTARCLG 138 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 AC AP V++ + L+ I A Sbjct: 139 ACGIAPAVVLDGEVVGHADRSDLKARIQAL 168 >gi|159027691|emb|CAO89556.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 169 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 1/139 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 QSA+I +L +AQE G++ + VA L + RV +ATFY F L P G Sbjct: 31 AGYNQSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHT 90 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC T C ++G K++E N K +DG +S C GAC AP V+ Sbjct: 91 CI-VCMGTACYVKGSGKILEDIENSFDVKVGETTADGEISLVSARCIGACGIAPAVVFDG 149 Query: 155 DTYEDLTPERLEEIIDAFS 173 E + + +FS Sbjct: 150 VVAPKQDSETVLAKLKSFS 168 >gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 567 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F++E+ + ++ P R + +I L Q++ G +S I +A + + Sbjct: 27 PKGRQFTDEAQAEILRLLGDRP--RRRDLLIEFLHLIQDEHGHISADHIAALATEMRIGQ 84 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E ATFY F + ++VC + C + G ++L + + + Sbjct: 85 AEIYETATFYAHFDVVKEDETPPPALTIRVCDSLSCEMAGAQQLQKALEDGL-------- 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE+++ I A DT P + Sbjct: 137 DPAAVRVVRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHLPDYET 191 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218 ++ A GG T L + +K +DD +S Sbjct: 192 YAAFTANGGYTKLKELRDGGDWEKVQDDILS 222 >gi|298528248|ref|ZP_07015652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511900|gb|EFI35802.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 161 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E + +I R + +IP L Q + G++ ++ ++ L+++ + +A Sbjct: 9 DEKMGELGAIIG--EEERKRGILIPALHEIQNKMGYLDPEELKELSKSLNISLTEIYSVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F P G + V+VC T C +RG + +++ + K D T++ E V Sbjct: 67 SFYKMFHFKPRGKK-IVKVCFGTACYVRGAKVVLDSLSEEFDVKDGETTEDLTMTLETVG 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C AP+V ++ ++ ++L+ ID+ Sbjct: 126 CVGCCGLAPVVTCNEEVVGEIDGKKLDAFIDSVKE 160 >gi|170727207|ref|YP_001761233.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi ATCC 51908] gi|169812554|gb|ACA87138.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi ATCC 51908] Length = 179 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 3/163 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 + S S + ++E+IS P + I L Q + GWVS A++ ++ + Sbjct: 15 DTAEISLSSKEQQGIDELISHSP--QLAGITIDALKLIQAERGWVSDASLHALSLYTQIP 72 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFY PVG + + C C L G E + + + +++ +D Sbjct: 73 VADLDSVATFYNLIFRQPVG-KVVLHPCDGISCDLMGGEHIRQCLKQQLNITAGETTTDN 131 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + + C GAC AP+++ K +E++T + L +++ ST Sbjct: 132 RFTLIPLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTLST 174 >gi|116748291|ref|YP_844978.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116697355|gb|ABK16543.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 162 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + +I P +++I +L +AQE G++ + VA L ++ + + Sbjct: 10 DAALVKGLARIIE--PYRGQPNSLIQVLAKAQEYIGYLPKWVQVQVAEGLGLSLQEIYGV 67 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY F L P G R + VC T C ++G + +++ R+ I KP D + E V Sbjct: 68 TTFYAFFSLIPRG-RHKLSVCAGTACYVKGTKNVLKGVRDAIGIKPGQTTPDSRFTMEIV 126 Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172 C GAC AP V++ D + L E++ EI+ + Sbjct: 127 RCIGACGLAPAVIVNGKDVHGRLEAEQIPEILSLY 161 >gi|218780115|ref|YP_002431433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761499|gb|ACL03965.1| Putative NADH:ubiquinone oxidoreductase 24 kD subunit, NuoE [Desulfatibacillum alkenivorans AK-01] Length = 154 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + + +I YP Q +++ +L QE G++S ++ + + + +AT Sbjct: 2 QQTVDIESIIDHYPG--VQESMVFILQDIQEAFGYISLENMQAACDHVGVPLTHAYSMAT 59 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F+L PVG + VC T C L+G ++++ +++ D + E V C Sbjct: 60 FYKSFRLEPVGE-HEIHVCLGTACHLKGGPRIVDELERRLNVHAGATTEDMRYTLETVNC 118 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170 GAC AP+V++ K+ +T +++++ + Sbjct: 119 LGACALAPVVVVDKEYVPKVTAKKIQKTLK 148 >gi|322417696|ref|YP_004196919.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] gi|320124083|gb|ADW11643.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18] Length = 160 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A++ A +L ++ ++V E+ATFY PVG + + V Sbjct: 21 REAAVDVMKELQAHYGWLTDEAVQEAAALLGLSPLQVEELATFYEMIYRRPVGRK-VIHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C C+ LI ++++ P +DG + C G C ++P + +G Y Sbjct: 80 CDSISCWCADCDGLIRHLKDRLGVGPGETTADGMFTLIPCCCMGMCGDSPAMSVGGTPYG 139 Query: 159 DLTPERLEEIID 170 LTPE +E+++ Sbjct: 140 RLTPELADEVLE 151 >gi|283850903|ref|ZP_06368189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] gi|283573826|gb|EFC21800.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp. FW1012B] Length = 166 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + +E ++ +++ R + A I ++ Q G++ A+E A +L M + + Sbjct: 1 MALPKELVADLSGMVAT--AERTREAAIDVMYALQRHYGYLCDEAMEYAARLLGMTTLEL 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY PVG R + VC + C + + + + + P DG + Sbjct: 59 ESLATFYDFLYRRPVG-RYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTV 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C NAP ++I Y+ L PE++ I+D Sbjct: 118 LPAACIGNCHNAPTMLINGRFYDRLHPEKINAILDELRA 156 >gi|170751377|ref|YP_001757637.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium radiotolerans JCM 2831] gi|170657899|gb|ACB26954.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 157 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 SA + +I+ + + + A +P+L QE G+V A+ ++A+ L+++ V TF Sbjct: 8 SAERASGIIAEH--THLEGATLPILHALQETFGYVDSGAVPLIADALNLSRAEVHGCITF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R V++C C G +KL ++ +DG+ + E V C Sbjct: 66 YHDFRAHPAG-RHEVKLCRAEACQAMGSDKLHREILGRLGCGWHETTADGSATVEPVYCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C N P ++ + LT + LE + Sbjct: 125 GLCANGPAALVDGEPVAHLTADALEAALTEVR 156 >gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 567 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F++E+ + ++ P R + +I L Q+ G +S I +A + + Sbjct: 27 PKGRQFTDEAQAEIQRLLGDRP--RRRDLLIEFLHLIQDTHGHISADHIAALAVEMRIGQ 84 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E ATFY F + G ++VC + C + G ++L + + P Sbjct: 85 AEIYETATFYAHFDVVKEGETPPPALTIRVCDSLSCEMAGAQQLKKALED--GLDPSE-- 140 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE+++ I A GDT P + Sbjct: 141 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----GDTHAHLPDYET 191 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218 ++ GG T L + + ++ ++ Sbjct: 192 FATYVENGGYTKLKELREGGDWEAVQEQILA 222 >gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Comamonas testosteroni KF-1] Length = 717 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + I+ + ++I LL Q G++ RAA+ +A L+++ V + ++ Sbjct: 27 EREALEHAIADHAA--RPGSLIELLHSLQNALGFIPRAAVPAIAEALNLSRAEVHGVVSY 84 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y + P G R +Q+C C RG + L + + + ++DG+++ E V C Sbjct: 85 YPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQAAMGCQAHGTSADGSVTLEPVYCL 143 Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179 G C +P VM+ + + + +T +RL+ ++ Q +T Sbjct: 144 GLCAQSPAVMVDESEVHARMTEDRLDALLAKIQQEQLET 182 >gi|284042619|ref|YP_003392959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei DSM 14684] gi|283946840|gb|ADB49584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei DSM 14684] Length = 212 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P++ E + +++YP R SA IP L AQ+ GW S AIE VA ++ + Sbjct: 35 DPATTPVPAELRTQIEAAMAKYPNFR--SAAIPALHAAQDLHGWCSPEAIEQVACVMRLT 92 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATFY F++ PVG R V VC C LRG + ++ ++ D Sbjct: 93 PGYLTAVATFYDMFEMKPVG-RHRVYVCTNISCSLRGADSVLAAVQDAAG-------DDA 144 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 + EC GAC APM + + L E+++ G+ + P Q+ R + Sbjct: 145 DFNVRPFECLGACDIAPMASVNGEFVGPLDLADAEQLVADLREGR--EVLPAKQLSRRAC 202 Query: 192 APAG 195 A G Sbjct: 203 ADPG 206 >gi|166362849|ref|YP_001655122.1| bidirectional hydrogenase complex protein HoxE [Microcystis aeruginosa NIES-843] gi|166085222|dbj|BAF99929.1| putative bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] Length = 169 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 7/169 (4%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 R E++ PS ++ ++ + R QSA+I +L +AQE G++ + V Sbjct: 7 RQTEKKEHPSG----DKRFKVLDITMKR--AGYNQSALIEVLHKAQEAFGFLEEDVLLYV 60 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A L + RV +ATFY F L P G + +C T C ++G K++E N K Sbjct: 61 ARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-ICMGTACYVKGSGKILEDIENAFDVKV 119 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +DG +S C GAC AP V+ E + + +FS Sbjct: 120 GETTADGEISLVSARCIGACGIAPAVVFDGVVAPKQDSETVLAKLQSFS 168 >gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein [Delftia acidovorans SPH-1] gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia acidovorans SPH-1] Length = 727 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 9/161 (5%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V I+ + +R +I LL Q+ G + AA+ +A+ L+++ V + ++ Sbjct: 27 EREAVEHAIAVH--ARRPGPLIELLHAVQDMLGHIPEAAVPRIADALNLSRAEVHGVISY 84 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------KPLHRNSDGTLSW 135 Y F+ +P G R +QVC C RG + L+ + ++DG ++ Sbjct: 85 YPHFRSTPAG-RHVLQVCRAEACQSRGADALLAHAGQALGCGSSGHGHEHGTSADGAVTL 143 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 E V C G C ++P VM+ + ++ L+ +I + Sbjct: 144 EPVYCLGLCASSPAVMLDGQPHAHVSANGLDALIAQCRQPE 184 >gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum] Length = 160 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R VC Sbjct: 29 ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 87 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G LIE + P D LS C GAC AP V++ + Sbjct: 88 GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDGEVLGKQ 147 Query: 161 TPERLEEIIDAFS 173 + L ++ S Sbjct: 148 ATDTLVATLEELS 160 >gi|163853800|ref|YP_001641843.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium extorquens PA1] gi|218532744|ref|YP_002423560.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium chloromethanicum CM4] gi|240141252|ref|YP_002965732.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens AM1] gi|254563761|ref|YP_003070856.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit gamma [Methylobacterium extorquens DM4] gi|28207553|gb|AAO32144.1| NAD-linked formate dehydrogenase gamma subunit [Methylobacterium extorquens AM1] gi|163665405|gb|ABY32772.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium extorquens PA1] gi|218525047|gb|ACK85632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium chloromethanicum CM4] gi|240011229|gb|ACS42455.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens AM1] gi|254271039|emb|CAX27046.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma subunit [Methylobacterium extorquens DM4] Length = 157 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +A +++ + A +P+L QE G+V A+ ++A+ L+++ V TF Sbjct: 8 NATRAAAIVA--GLQSLEGATLPILHALQEAFGYVDAQAVPMIADALNLSRAEVHGCLTF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P R HV++C C G ++L +++ ++DG ++ E V C Sbjct: 66 YHDFRREPPAGRHHVKLCRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C NAP ++ + L+ E L+ + Sbjct: 125 GLCANAPAALVDDEPLARLSAESLDAALKEARA 157 >gi|217979754|ref|YP_002363901.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella silvestris BL2] gi|217505130|gb|ACK52539.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella silvestris BL2] Length = 161 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +A E+I + + ++P+L QE+ G+V+ A+ ++A L+++ V + +F Sbjct: 12 NAERAAEIIHEHLG--LEGPMLPILHALQEEFGYVNGDAVPMIAKALNLSRAEVHGVTSF 69 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R +++C C G E+L + + +DG L+ E + C Sbjct: 70 YHDFRHEPAG-RHVLKLCRGESCQSMGSEELARKFLTGLGIEWGGTTADGDLTVEAIYCL 128 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 G C +P M+ + L E L E ++ S Sbjct: 129 GLCACSPAAMLDDELIGALDEETLAEAVNTVSA 161 >gi|260427116|ref|ZP_05781095.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp. SE45] gi|260421608|gb|EEX14859.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp. SE45] Length = 155 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S+ +A + +I + ++P+L QE V AA+ ++A L++ V + Sbjct: 4 SKPTADEIQALID--GQMHLEGPLLPILHALQEAYDHVPEAALGMIAETLNLTKAEVHGV 61 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ +P G R V++C C G L + K+ SDG ++ E V Sbjct: 62 MSFYHDFRKAPAG-RHVVKICRAEACQSMGANALSDAVLEKLGIGWGGTTSDGLVTVEAV 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C AP M+ RLE+ ++ Sbjct: 121 YCLGLCACAPAAMVDDRLIARADAARLEKALEG 153 >gi|302875424|ref|YP_003844057.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|307689022|ref|ZP_07631468.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|302578281|gb|ADL52293.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 157 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 +F F+ +++ +I +S+++ LL Q G++ + ++ LD++ Sbjct: 2 NKTFDFN-----FIDGIID--GLGCKESSIVHLLQSIQNHYGFLPKEVFSYLSQKLDISE 54 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDG 131 R+ +ATFY F L P G + ++VC T C ++ +++ R +++ + D Sbjct: 55 ARIYSVATFYKNFSLDPKG-KYIIKVCDGTACHVKKSIPVLDRLRKELNLSEVKLTTDDL 113 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + E V C GAC AP++M+ Y +TP++ E++ S Sbjct: 114 LFTVETVHCLGACGRAPVLMVNNKVYPSMTPDKAIELVKNLS 155 >gi|281357445|ref|ZP_06243933.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] gi|281316048|gb|EFB00074.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis vadensis ATCC BAA-548] Length = 150 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R S +I L Q EG+VS +I ++ + + V + +FY QF+ G + Sbjct: 12 GREPSNLIKGLQAVQGVEGYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRVKPG-KYK 70 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C T C ++G + E + + + G S E V C G C AP++ + Sbjct: 71 IAICDGTACHIKGSPLVQEWVSRALGIEDGQTDERGHFSLETVACLGCCSLAPVMSVNGR 130 Query: 156 TYEDLTPERLEEIIDAFST 174 Y L + +I+ + Sbjct: 131 VYGKLDRKSTIKILKEYEA 149 >gi|288941581|ref|YP_003443821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium vinosum DSM 180] gi|288896953|gb|ADC62789.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium vinosum DSM 180] Length = 164 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 A+I L Q+ G++ ++ VA LD+ +V +ATFY F L P G R VC Sbjct: 33 ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 91 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C ++G LIE + P D LS C GAC AP V++ + Sbjct: 92 GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDGEVLGKQ 151 Query: 161 TPERLEEIIDAFS 173 + L ++ S Sbjct: 152 ATDTLVATLEELS 164 >gi|171059433|ref|YP_001791782.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix cholodnii SP-6] gi|170776878|gb|ACB35017.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix cholodnii SP-6] Length = 173 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + + V VI+ + A++P+L Q+ G + A+ +A L+++ V + Sbjct: 8 DAALATVRAVIA--ERAHLAGALLPILHGVQDAIGHIPSEAVPEIARALNLSRAEVHGVI 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEV 138 T+Y F+ P G R +QVC C RG E L+ R ++ HR++DG S E V Sbjct: 66 TYYHHFRAEPAG-RHVLQVCRAESCQARGGEALLAQARERLGCSADVHRSADGAWSVEPV 124 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C ++P + I + + +T RL+ ++DA Sbjct: 125 YCLGLCASSPAIQIDERQHARVTATRLDALLDA 157 >gi|297616329|ref|YP_003701488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] gi|297144166|gb|ADI00923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus lipocalidus DSM 12680] Length = 148 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 +I++Y +I Q+++ ++ AI A ++ +ATFY+ F Sbjct: 5 KAIIAKYKD--LPGGIIEAYHAIQKEQSFIPEEAIIAAAEAFNIPVKDAYGVATFYSMFS 62 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + G + +++C + PC + G +++ ++ K DG + E EC G C Sbjct: 63 VKTRG-KNVIRICESAPCHIAGAAQVVAALEKELGIKMGETTPDGKFTLEFTECVGQCQA 121 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 P++ I Y D+TPE++ I+ + Sbjct: 122 TPVITINGKPYGDITPEKIPAILAEYK 148 >gi|254413281|ref|ZP_05027052.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Microcoleus chthonoplastes PCC 7420] gi|196179901|gb|EDX74894.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily [Microcoleus chthonoplastes PCC 7420] Length = 197 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 +I +L +AQE G++ + VA L + RV +ATFY F L P GT Sbjct: 59 AQYRPDVLIEVLHKAQEAFGYLEEDVLLYVARGLKLPLSRVYGVATFYHLFSLKPGGTHT 118 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C ++G +++ + DG +S C GAC AP V+ Sbjct: 119 CV-VCTGTACYVKGGGQVLSALEEHFGIQVGDTTPDGEMSLLSARCLGACGIAPAVVFDG 177 Query: 155 DTYEDLTPE 163 T E Sbjct: 178 TVAPKQTAE 186 >gi|325294616|ref|YP_004281130.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065064|gb|ADY73071.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 167 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 VI +L QE+ ++S+ A+E V+ L++ ++ IATFY+ F L PVG + + VC Sbjct: 22 GKVISILEDIQEKNKYLSKEALEYVSEKLNIPLSQLYSIATFYSFFNLKPVG-KHIISVC 80 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLH---------RNSDGTLSWEEVECQGACVNAPMV 150 TPC ++G +LI+ + K D + S C G C AP++ Sbjct: 81 TGTPCHVKGAPQLIKTLERLLGIKQDEVSEDSKFFLTTHDRSFSLTAARCFGCCSMAPVI 140 Query: 151 MIGKDTYEDLTPERLEEIIDAF 172 I Y +T L +I+ + Sbjct: 141 RIDDKIYGYVTVNDLPKILKEY 162 >gi|189499446|ref|YP_001958916.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium phaeobacteroides BS1] gi|189494887|gb|ACE03435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium phaeobacteroides BS1] Length = 195 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 15/191 (7%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V + I+ + SA +PLL Q + G++ R A++++ D+ ++ +ATFY+QF Sbjct: 15 VQKWIA--ETGKSVSAAVPLLQAVQNEYGYLPREAMDIIVAETDVGASQLYGVATFYSQF 72 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGA 143 +L PVG R ++VC T C + G +++ R + K S+G+ + E+V C G Sbjct: 73 RLDPVG-RHVIKVCHGTACHVSGADRINTALRQSLGIKNEDEDTASNGSYTVEDVACIGC 131 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203 C AP+++IG +T+ +L + + + QG+ + PG + ++ + Sbjct: 132 CSLAPVMVIGDETFGNLKGTDAQRSLKKHARQQGEFL-PGHEEEKSEAEAP--------- 181 Query: 204 NSKKRGKKKKD 214 + + GK+KK+ Sbjct: 182 DRRSPGKQKKE 192 >gi|15806513|ref|NP_295224.1| NADH dehydrogenase I subunit E [Deinococcus radiodurans R1] gi|6459263|gb|AAF11068.1|AE001994_4 NADH dehydrogenase I, E subunit [Deinococcus radiodurans R1] Length = 207 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 16 FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 S+ + V E+ SRYP P +SA++PLL Q+ EG+V+ + +A + Sbjct: 1 MSYFADKTPLVAEIFSRYPDTPQGRRSALMPLLREVQDAEGFVAAPRLAEIAELCGTTAT 60 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 V + +FY+ + P G R H+QVC T C L G + L + ++ +P DG Sbjct: 61 EVRSVMSFYSTYHTVPTG-RYHLQVCSTLMCALAGSDALWDELVTRLDVQPGEVTPDGRF 119 Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTP 162 S ++VEC G+C AP++ + + YE + P Sbjct: 120 SVQKVECLGSCGTAPVLQLNDEGFYERVGP 149 >gi|301061250|ref|ZP_07202032.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2] gi|300444569|gb|EFK08552.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2] Length = 165 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 E+ + + I R Q+ I ++ Q+ G++S A+ A++L M + + Sbjct: 1 MMLPEDKKEELQKQILEGEAPREQA--INVMFALQKCYGYLSDEAVAEAAHMLGMTTLEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 E+ATFY PVGT + VC ++ C + G E +++ K+ P +DG + Sbjct: 59 EELATFYDFLYREPVGT-YVIHVCDSSICWMYGEETVMDYLVKKLAITPGETTADGLFTI 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V C G C +AP+++I Y LTPE ++ I++ Sbjct: 118 LPVCCVGYCDHAPVMLINGKPYGPLTPEYIDRILEDIR 155 >gi|187250941|ref|YP_001875423.1| putative FeFe hydrogenase subunit HydC [Elusimicrobium minutum Pei191] gi|186971101|gb|ACC98086.1| Putative FeFe hydrogenase subunit HydC (NuoE) [Elusimicrobium minutum Pei191] Length = 163 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 3/155 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + I + ++ ++ Q ++I +L Q+ G+V R ++ ++++ ++ E+ Sbjct: 7 TAAPKIDLKKITDKW--QGKQGSLIMILHEIQDTLGYVPREISLELSQLINVPLAQIYEV 64 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+L+P + + VC T C L+G ++I+ + K + D S V Sbjct: 65 LSFYHFFKLTPP-AKYRISVCTGTACYLKGAPEIIKEFTRLLGIKEGEQTKDSNFSLTGV 123 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C G C AP+V + + + ++ I+ + Sbjct: 124 RCVGCCGLAPVVSVNGKIFGAVKATEVKNIVQEYK 158 >gi|118473363|ref|YP_884575.1| formate dehydrogenase, subunit gamma [Mycobacterium smegmatis str. MC2 155] gi|118174650|gb|ABK75546.1| formate dehydrogenase, gamma subunit [Mycobacterium smegmatis str. MC2 155] Length = 161 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 A V E+ + + R ++P+L QE+ G V A+ V+A L+++ V + TFY Sbjct: 12 ATLVREIAADHRDHR--GPLLPILHAVQERLGCVPAEAVPVLAEELNLSRADVHGVITFY 69 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F+ P G R V+VC C G +L+ +++ + DGTL+ E+V C G Sbjct: 70 HDFRSEPAG-RTTVRVCRAEACQALGASRLVAHLQDRHGVQLGDATDDGTLTAEQVFCLG 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C P + Y L RL +ID+ Sbjct: 129 NCALGPSAQVDGRLYGRLDEARLSALIDS 157 >gi|39933809|ref|NP_946085.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris CGA009] gi|39647656|emb|CAE26176.1| putative NAD-dependent formate dehydrogenase gamma subunit [Rhodopseudomonas palustris CGA009] Length = 156 Score = 167 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + +++I+ + + A + +L Q+ G+V + A +VA L+++ V Sbjct: 1 MQYEPWEPARASDIIA--GLTHKEGATLLMLQALQQAFGYVPQDAEPMVAQALNLSRAEV 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY F+ P G R +++C C G + L ++ +DG ++ Sbjct: 59 HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALAAHAETRLGVTFGATTADGAVTL 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 E C G C AP M+ + L +L+ ++ Sbjct: 118 EPAYCLGLCATAPSAMMNERVVGRLDAVKLDALLAE 153 >gi|124268892|ref|YP_001022896.1| NAD-dependent formate dehydrogenase subunit gamma [Methylibium petroleiphilum PM1] gi|124261667|gb|ABM96661.1| NAD-dependent formate dehydrogenase gamma subunit [Methylibium petroleiphilum PM1] Length = 161 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S V V++R A++P+L Q+Q G + A+ +A L+++ V + T+ Sbjct: 4 SLAAVRAVLARRADE--PGALLPILHEVQDQLGCIPADAVPEIAGALNLSRAEVHGVITY 61 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R +QVC C G E L+ ++ + +SDG + E V C Sbjct: 62 YHHFRGEPAG-RHVIQVCRAEACQALGAEALLTHAERRLVCRSHASSSDGRYTLEPVFCL 120 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C ++P ++I + + ++P + +I A Sbjct: 121 GLCASSPAIVIDERLHARISPAAFDRLIGAL 151 >gi|39998532|ref|NP_954483.1| NADH dehydrogenase subunit E [Geobacter sulfurreducens PCA] gi|39985479|gb|AAR36833.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA] Length = 162 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E V ++ + A + ++ Q GW++ A+ A +L + ++V E Sbjct: 6 LKKELQARVAHAVT------SREAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG R + VC + C G E L+ ++ +P +DG + Sbjct: 60 LATFYEMIYRRPVGKR-VIHVCDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID----AFSTGQG 177 C G C AP +M+G + +T ER EI+ + +G Sbjct: 119 CCCLGNCGEAPTLMVGDTLHGRVTLERAGEILATERRQLAAAEG 162 >gi|115526638|ref|YP_783549.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisA53] gi|115520585|gb|ABJ08569.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 160 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 3/159 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + A E+I+ + A + +L QE G+V + AI ++A L+++ Sbjct: 2 PIAVVYEPWDAERAAEIIAELKS--HEGATLVILHAMQEAFGYVPQDAIPMIALALNLSR 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V + TFY F+ +P G R +++C C G + L + +DG Sbjct: 60 AEVHGVFTFYHDFRKAPAG-RHVLKLCHAEACQAAGGDALAARAEKTLGISVGDTRADGV 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 +S E + C G C AP M+ LT L+ ++ Sbjct: 119 VSLEPIYCLGLCATAPSAMLDGRLIGRLTEAGLDALLAE 157 >gi|325274758|ref|ZP_08140794.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51] gi|324100102|gb|EGB97912.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51] Length = 160 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++R A++P+L Q ++ AA+ +A+ L+++ V + +FY F Sbjct: 11 IQRILAR--DKDTPGALLPMLHAIQHDLCYIPDAAVPELAHALNLSLAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C RG E L R ++ ++DG +S V C GAC Sbjct: 69 RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 +P + + + LTPERL +++A Sbjct: 128 CSPALELDGQVHARLTPERLRALVNACQE 156 >gi|239905978|ref|YP_002952717.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1] gi|239795842|dbj|BAH74831.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1] Length = 166 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 3/164 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E + +++ + A + ++ Q G++ A+ A +L M + + Sbjct: 4 LPPELQADLRRLVTA--VDNPREAAVDVMYALQHHYGYLCDEAMHRAAEVLGMTTLELES 61 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG R + VC + C + + + + + P DG + Sbjct: 62 LATFYDYLYRRPVG-RYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLP 120 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C NAP ++I Y+ LTPE ++ +I G + +R Sbjct: 121 AACVGNCHNAPTMLINGRFYDRLTPEAVDAVIAELRAGTEEPVR 164 >gi|326567653|gb|EGE17761.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 12P80B1] Length = 169 Score = 167 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHHYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus Ellin428] Length = 655 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 21/191 (10%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + ++E I+ YP S+ +SA +PLL QE G++S AI +A L++ I + Sbjct: 1 MEVPSDLLAKIDEAITHYPASK-RSASLPLLHLWQEHFGFISDEAISWIAQKLELQPINI 59 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK------------ 123 LE+ TFY F+ P G R ++VC T C + G +L E Sbjct: 60 LELVTFYPMFRREPAGKRH-IRVCRTLSCAMAGSYELKERIAAAAGIDLKKWAEEGAHHA 118 Query: 124 ------PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 P+ + DG S E VEC +C +AP+ M+ + E++ E +++ Sbjct: 119 NAGHGNPIAVSPDGQYSIEFVECLASCGSAPVAMVDDNFKENVKLEDAAKLL-KLQRSDA 177 Query: 178 DTIRPGPQIDR 188 R P R Sbjct: 178 TMPRVRPPHPR 188 >gi|296112935|ref|YP_003626873.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4] gi|295920629|gb|ADG60980.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4] gi|326569468|gb|EGE19528.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC8] gi|326577452|gb|EGE27336.1| NADH dehydrogenase subunit E [Moraxella catarrhalis O35E] Length = 169 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP +R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHHYPQAR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|298507476|gb|ADI86199.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400] Length = 162 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E V ++ + A + ++ Q GW++ A+ A +L + ++V E Sbjct: 6 LKKELQARVAHAVT------SREAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATFY PVG R + VC + C G E L+ ++ +P +DG + Sbjct: 60 LATFYEMIYRRPVGKR-VIHVCDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID----AFSTGQG 177 C G C AP +M+G + +T ER EI+ + +G Sbjct: 119 CCCLGNCGEAPTLMVGDTLHGRVTLERAGEILATERRQLAAAEG 162 >gi|257066579|ref|YP_003152835.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus prevotii DSM 20548] gi|256798459|gb|ACV29114.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus prevotii DSM 20548] Length = 164 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 40 SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 V+P L + Q ++ ++++A L++ + +ATFY+ F L P G + VC Sbjct: 27 GCVMPALQKCQNVFSYIPEPVVDLMALKLNVPSSEIYGVATFYSHFSLKPKGE-HDICVC 85 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158 T C + G +K+++ ++ + DG +S E C G C +AP+VMI D E Sbjct: 86 LGTACYVNGSDKILKSLAEELGVEVGDTTEDGKISLSEARCVGECGSAPVVMIDGEDFVE 145 Query: 159 DLTPERLEEII 169 + P ++ II Sbjct: 146 KVDPSQVHNII 156 >gi|288817440|ref|YP_003431787.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6] gi|288786839|dbj|BAI68586.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6] gi|308751047|gb|ADO44530.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobacter thermophilus TK-6] Length = 154 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EES + + + Y P R Q A++ L Q G + A+E VA ILD+ V + Sbjct: 3 EESLLEKLKQHAEYFPKREQ-AILLCLHEVQNHYGHIPEFALEEVAKILDLPLNHVENVV 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F R ++VC + C L G +KLI+ R ++ DG V+ Sbjct: 62 SFYDMFDRG-EPARHRIRVCVSVVCHLMGKDKLIKALRELLNIDFGQVTKDGRFKLLAVQ 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C GAC AP M+ +D Y+ E+L E++ ++ Sbjct: 121 CLGACSEAPFFMVDEDAYKFENKEKLNEVLSRYA 154 >gi|332529345|ref|ZP_08405306.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella gracilis ATCC 19624] gi|332041143|gb|EGI77508.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella gracilis ATCC 19624] Length = 160 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S E V V+ S+ A++P+L Q+Q G++ + +A L+++ V + Sbjct: 14 SPEQRAAVRAVLDA--RSQQAGALLPILHDIQDQLGYIPADVVVDIAEALNVSRAEVHGV 71 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 T+Y F+ P A VQVC C G E L E K ++ E V Sbjct: 72 ITYYHHFRSEPARG-AVVQVCRAEACQSCGSEALWEHASKK---AAGQ-----NVTLEPV 122 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C G C AP V I + +TP + + ++ Sbjct: 123 YCLGLCATAPAVQIQDKFHARVTPTKFDRLLAQLKEA 159 >gi|330720273|gb|EGG98632.1| NAD-dependent formate dehydrogenase gamma subunit [gamma proteobacterium IMCC2047] Length = 164 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 3/150 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V+E+I + A++P+L Q+ +G++ + A+ ++A L+ V + +F Sbjct: 8 DRQRVSEII--HSTKSMAGALLPMLHAIQDSQGYIPKDAVPMIAESLNQTRAEVHGVISF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +P R +++C C RG +L + K+ + S + V C Sbjct: 66 YHHFRQTPP-ARKRIEICRAEACQARGSRELEAYAKEKLGISYHGMTASRDFSLDPVYCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G C P V IG + + R +E++D Sbjct: 125 GNCACGPSVRIGDEVVGRVDKTRFDELVDD 154 >gi|114705204|ref|ZP_01438112.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi HTCC2506] gi|114539989|gb|EAU43109.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi HTCC2506] Length = 157 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 6/155 (3%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F E+ AI ++ Y + ++P+L + G++ A+ ++A L++ V Sbjct: 6 EFDEDDAI---ALVEEY--KHLEGPLLPILHAFSHRYGYIGDEAVRLIAGELNLTRAEVY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY F+ P G R ++VC C G + + + + K ++DG ++ E Sbjct: 61 GVVSFYHDFKREPHG-RHVLKVCRAEACQAAGGDAIADSLEKALGIKFGETSADGAVTLE 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C AP M+ L R +++ Sbjct: 120 AVYCLGLCATAPSAMLDDRIIGRLNQPRAKKLAAE 154 >gi|116750138|ref|YP_846825.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] gi|116699202|gb|ABK18390.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 190 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++ V+ R Q A+I +L AQE G+++ + A L + + V +ATFY Sbjct: 22 YKGIDRVLKR--QQYQQDALIEVLTSAQEAFGYLTEDVLIYTARQLKLPFSWVYGVATFY 79 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F L P G + + VC T C + +++E + + K DG L+ C G Sbjct: 80 HFFSLKPQGEHSCI-VCLGTACYVGKSNEIVEALEKEFNVKAGQTTEDGKLTVTTTRCLG 138 Query: 143 ACVNAPMVMIGKDTYEDLTPE----RLEEII 169 C AP+ ++ PE +++ ++ Sbjct: 139 CCGLAPVAVLDNQVLGKELPETTIAKVKAVL 169 >gi|326561159|gb|EGE11524.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 7169] Length = 169 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|269837268|ref|YP_003319496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter thermophilus DSM 20745] gi|269786531|gb|ACZ38674.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter thermophilus DSM 20745] Length = 180 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 7/163 (4%) Query: 20 EESAIWVNEVISR---YPPSRCQSAVI-PLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 E + ++ R Y + +I AQ GWV + A +V+A+ L ++ RV Sbjct: 10 ELDLEPLKRILERDFRYDTHQDAEELILGACQEAQNLYGWVPQPAAQVIADHLGVSVNRV 69 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFY F+ P G + + +C T C + G ++LI R++ DG L+ Sbjct: 70 YSLLTFYADFRTEPPG-KHFLLLCHGTACYVMGSQRLIATLRDEYGITNGEVTRDGELTL 128 Query: 136 EEVE-CQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 + V C G C AP++ + TY LTP+RL E ++A G+ Sbjct: 129 QVVNGCLGVCDLAPVIQVDHHTYCGRLTPDRLRETLEALKRGE 171 >gi|283778530|ref|YP_003369285.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi DSM 6068] gi|283436983|gb|ADB15425.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi DSM 6068] Length = 166 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +EE + I RYP Q+ +P L E+ +V A+ +A +L++ Sbjct: 6 PEKPVLTEEMIAEIKAFIPRYPS--KQAVTLPALHIVYEKLRYVPLTAVVEIARLLELHP 63 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V + +FY F + + VC + C LRG ++L+E +K+ P +DG Sbjct: 64 SQVQDTLSFYGYFPQKKPCGKTRMWVCRSISCALRGADELLEHLSHKLDVHPGETTADGK 123 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 ++ E EC GAC +AP ++ ++ ++ ++++ Sbjct: 124 ITLEYAECLGACEHAPCILADTVLHKSVSQPDSDKLVAELKR 165 >gi|39937321|ref|NP_949597.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009] gi|192293101|ref|YP_001993706.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1] gi|39651179|emb|CAE29702.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris CGA009] gi|192286850|gb|ACF03231.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris TIE-1] Length = 162 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + ++ +A++ L QE EGWVS A ++ A++L + + Sbjct: 1 MSLSPALKTAIQHAAATHGGAK--AAMVEALKLVQEAEGWVSDAHLKEAADVLGVTPAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q SPVG + +C C L G + + + +K+ DG + Sbjct: 59 DALATFYSQIFRSPVGD-TVILLCDGLSCYLCGGDAVRDAVMSKLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175 + C G C AP+ ++G + LTP+ L+ +I S G Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALIGGVSVG 159 >gi|116749389|ref|YP_846076.1| NADH dehydrogenase subunit E [Syntrophobacter fumaroxidans MPOB] gi|116698453|gb|ABK17641.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter fumaroxidans MPOB] Length = 163 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + + R Q+ I ++ Q+ G+++ A+E A IL M + + E+A Sbjct: 4 EEMRSALARKAASAESPREQA--IDVMFELQDHYGYMTDEAMEEAAGILGMTTLELEELA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY SPVG R + VC + C + G +++I+ ++ + DG + V Sbjct: 62 TFYDHIYRSPVG-RYVIHVCDSAVCWMEGYQRIIDYLCQRLKLTVGGTSPDGLFTLLPVC 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C AP +MI ++ Y LT E+++ I+D Sbjct: 121 CIGYCDRAPAMMINRNVYGRLTREKIDRILDRL 153 >gi|86747852|ref|YP_484348.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris HaA2] gi|86570880|gb|ABD05437.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 156 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 E+I+ + + + +L QE G V AA +VA L+++ V + TFY Sbjct: 10 RAAEIIA--GLTHKEGPTLVILHALQEAFGHVPAAAEPMVAQALNLSRAEVHGVLTFYPD 67 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+ +P G R +++C C G + L ++ +DG ++ E C G C Sbjct: 68 FRRTPPG-RHVLKLCRAEACQAAGGDALAARAETRLGVTFGATTADGAVTLEPTYCLGLC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP M+ + L +L+ ++ Sbjct: 127 ATAPAAMLNERVIGRLDAGKLDALL 151 >gi|326572770|gb|EGE22756.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC7] Length = 169 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|171914656|ref|ZP_02930126.1| NADH dehydrogenase (ubiquinone), E chain [Verrucomicrobium spinosum DSM 4136] Length = 166 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++EVI+ YP S+ +SAV+PLL Q + +++ A+ VA L + I+VLE+ Sbjct: 7 AALEAKIDEVITHYPVSK-RSAVLPLLHLMQHEYRYITDDAVNWVAAKLGLQPIQVLEVV 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN-----KIHQKPLH---RNSDG 131 TFY F+ S G + H++VC T C + G +L+E + H H ++DG Sbjct: 66 TFYPGFRQSAPG-KFHIRVCRTLSCAMAGSYELMESLCKAADIDRSHVDHHHPIAVSADG 124 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 S E EC +C P+ M+ D +E + P+ E++ + Sbjct: 125 KYSIEFAECLASCGFGPVCMVEDDFHESVKPQAAAELLKQYQ 166 >gi|51246060|ref|YP_065944.1| bidirectional hydrogenase complex protein HoxE [Desulfotalea psychrophila LSv54] gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (ubiquinone) I, chain E [Desulfotalea psychrophila LSv54] Length = 194 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 1/133 (0%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94 A+I L Q G++ R A+E VA+ L + +V +ATFY F L P G Sbjct: 51 NGNRPEALIETLHTVQNTFGFIDRDAMEYVASGLHVPLSQVYSVATFYHYFTLKPPGEHT 110 Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC T C + G L+E N + P + DG +S C G+C AP + Sbjct: 111 CV-VCTGTACYVSGSSALLETIHNTVGIDPGETSQDGKVSLLTTRCLGSCGLAPAAVFDG 169 Query: 155 DTYEDLTPERLEE 167 L +EE Sbjct: 170 QVAGKLQSATIEE 182 >gi|332285352|ref|YP_004417263.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7] gi|330429305|gb|AEC20639.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7] Length = 168 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 4/159 (2%) Query: 14 SSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 + F+ S E+ V + + RY ++P+L Q G + A+ V+A L + Sbjct: 8 NEFNPSNETVQQVALQALERYEG--QPGNLLPILHAIQHALGCIPALAVPVLAKALQRSR 65 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + + +FY F+ P G ++VC C G L E R ++ ++G Sbjct: 66 AEIQGVISFYPHFREKPAGA-VMLEVCRAESCQAMGGNALAEHARQQLGCNFDDTTANGA 124 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 ++ + V C G C +P VMI + +TPE+L+ ++ A Sbjct: 125 VTLQAVYCLGLCAQSPAVMINGQPHARMTPEKLDRLLQA 163 >gi|188584098|ref|YP_001927543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium populi BJ001] gi|179347596|gb|ACB83008.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium populi BJ001] Length = 157 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A +P+L QE G+V A+ ++A+ L+++ V TFY F+ P R HV++ Sbjct: 23 EGATLPILHALQETFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C G ++L +++ ++DG ++ E V C G C N P ++ + Sbjct: 83 CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANGPAALVDDEPLA 141 Query: 159 DLTPERLEEIIDAFST 174 L+ E L+ + Sbjct: 142 RLSAESLDAALKEARA 157 >gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 565 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 2/156 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE + ++S+Y R ++++P+L + G + A++ +A ++D+ V +A Sbjct: 7 EELKEKIALLVSKYGNDR--ASILPVLEDISREYGEIDLYAMQTLAFLVDIHPSEVFGVA 64 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY + + +++C T C ++ +++ + N++ + SDG S E Sbjct: 65 TFYNFLKSGKKHGKYVIRLCRTISCHMKEKDRIAKQLNNELEIEFGEITSDGLFSLEYCN 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 C G C P ++I + P + II + G Sbjct: 125 CLGMCDQGPAMLINDILISKVKPSDIPLIIQSCRRG 160 >gi|212696953|ref|ZP_03305081.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM 7454] gi|212676041|gb|EEB35648.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM 7454] Length = 167 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E +++E I + + AV+P+L + Q ++ ++++A L ++ + +A Sbjct: 13 DEFCEFLDENIGK------KGAVMPVLQKCQNLFSYIPEPIVDLMALKLGVSSSEIYGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L P G + VC T C ++G +K+++ +++ + DG +S E Sbjct: 67 TFYSQFSLKPKGE-HEICVCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEAR 125 Query: 140 CQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFSTGQGD 178 C G C AP+V I + +L+ + +II + D Sbjct: 126 CIGQCGIAPVVSIDGNLDIGNLSSADVHKII--LKAKEID 163 >gi|326565197|gb|EGE15384.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 103P14B1] gi|326574010|gb|EGE23959.1| NADH dehydrogenase subunit E [Moraxella catarrhalis CO72] Length = 169 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ I YP R +AV+ L Q++ GWV+ A + +AN+L ++ V Sbjct: 17 LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEG 74 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +ATF+ + PVG R + VC + C L G E L+ + ++ + +DG + Sbjct: 75 VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEMLLAEFKAQLGIEFGQTTADGRFTLLP 133 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + C G C V+I +DTY + P + +++ + Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168 >gi|197116577|ref|YP_002137004.1| NADH dehydrogenase subunit E [Geobacter bemidjiensis Bem] gi|197085937|gb|ACH37208.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem] Length = 156 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++E + + R A+ P ++ Q GW++ A+ A++L ++ ++V E+A Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAASLLGLSPLQVEELA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY PVG + + VC + C C+ +IE + ++ + +DG + Sbjct: 62 TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C ++P + +G Y LTP ++EI++ Sbjct: 121 CMGRCGDSPAMSVGGTPYGHLTPHLVDEILEK 152 >gi|269119250|ref|YP_003307427.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] gi|268613128|gb|ACZ07496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella termitidis ATCC 33386] Length = 158 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++I +L +AQ G++ R E VA L+ + V + +FY+ F + P G A V Sbjct: 24 KKGSLISVLHKAQGIFGYLPREIQEYVAEKLNESLANVYGVVSFYSFFTMVPKGEHA-VS 82 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C +RG +K++ + ++ K + DG S + + C GAC AP+V++G+ Y Sbjct: 83 VCMGTACYVRGADKVLGEFQKELGIKSGETSLDGKFSIDALRCVGACGIAPVVLVGEKVY 142 Query: 158 EDLTPERLEEIIDAFS 173 + + + +++II+ + Sbjct: 143 KKVEVKEVKKIINEYK 158 >gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 626 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 V ++ R+ + + ++ +L Q++ ++ A ++ +A + I V +A+FY+ Sbjct: 25 AVADICERFGNDKHR--MLDILREVQDRFQCIAPATMDQIAEETGLTRIEVEGVASFYSF 82 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 L P G R +++C G E + + + K ++DG +S E C G C Sbjct: 83 LSLQPKG-RITIRLCDDIVDRYAGLEAVTAAFEDALGIKIGETSADGAVSLEYTPCIGMC 141 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APAGGLTSLLDN 203 AP M+ +LT + E+ +A G+ DR ++ +P ++DN Sbjct: 142 DQAPAAMVNDIVLTNLTAQSAREVAEAIIAGKRPEDLV---SDRFATLSPHDRAVRMVDN 198 Query: 204 NSKKRGK 210 N + G Sbjct: 199 NIRHAGA 205 >gi|220920303|ref|YP_002495604.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219944909|gb|ACL55301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 157 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 +I+ + + + A +P+L QE G+V AI ++A+ L+++ V TFY Sbjct: 10 ARAARIIAEH--THLEGATLPILHALQETFGYVDNEAIPLIADALNLSKAEVHGCITFYH 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ P G R V++C C G + L ++ DG ++ E V C G Sbjct: 68 DFRAKPAG-RHVVKLCRAEACQAVGADALHAEVLRRLEVDWHGTTRDGAVTVEPVFCLGL 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C P +I + L + L+ + + Sbjct: 127 CACGPAALIDGEPVARLDADGLQAALTEVAA 157 >gi|158340817|ref|YP_001521985.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa subunit, chain E [Acaryochloris marina MBIC11017] gi|158311058|gb|ABW32671.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa subunit, chain E [Acaryochloris marina MBIC11017] Length = 177 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ + + R+ +++I +L +AQE G++ R + +A+ L + +V +A Sbjct: 18 DQRFRVLEATMKRH--QYQPNSLIEVLHKAQELFGYLERDILLHIAHSLKLPPSQVYGVA 75 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F L+P G R VC T C ++G L+ H + DG LS Sbjct: 76 TFYHFFSLTPSG-RHTCVVCMGTACFVKGAASLLSTVEQIAHIQAGETTQDGGLSLSTAR 134 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167 C GAC +AP V++ T E L + Sbjct: 135 CLGACGSAPAVVLDGQVVGYQTSENLGQ 162 >gi|330501360|ref|YP_004378229.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina NK-01] gi|328915646|gb|AEB56477.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina NK-01] Length = 164 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P F+ E+ A EV++ + A++P+L Q++ G V + ++A L ++ Sbjct: 5 PQRFA-PEQCAAVAREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSR 61 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V + +FY F+ +P G R +++C C G + L +K+ DG+ Sbjct: 62 AEVHGVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGS 120 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 LS+E V C G C AP VM+ + + + E + ++ Sbjct: 121 LSFEPVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159 >gi|316935782|ref|YP_004110764.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] gi|315603496|gb|ADU46031.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas palustris DX-1] Length = 162 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 5/162 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + ++ +A++ L QE EGWVS A ++ A++L + + Sbjct: 1 MSLSPALKTAIQHAAATHGGAK--AAMVEALKLVQEAEGWVSDAHLKEAADVLGVTAAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q SPVG + +C C L G + + + K+ DG + Sbjct: 59 DALATFYSQIFRSPVGD-TVILLCDGLSCYLCGGDAVRDAVMEKLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175 + C G C AP+ ++G + LTP+ L+ +I + G Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALIGGAAVG 159 >gi|330809408|ref|YP_004353870.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377516|gb|AEA68866.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 160 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ V++R A++P+L Q G+V +A+ +A+ L+++ V + +FY F Sbjct: 11 IHSVLAR--EKDTPGALLPILHAIQAGCGYVPDSAVPEIAHALNLSQAEVRGVISFYHDF 68 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +++C C G E L R ++ ++DG++S V C GACV Sbjct: 69 RTTPP-ARHTLRLCRAESCKSMGAETLAAQLREQLALDDHGTSADGSISLRPVYCLGACV 127 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P + + + + +TPERL ++++ Sbjct: 128 CSPALELDGELHARITPERLRQLVND 153 >gi|325845920|ref|ZP_08169118.1| putative bidirectional hydrogenase complex protein HoxE [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481826|gb|EGC84858.1| putative bidirectional hydrogenase complex protein HoxE [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 +E +++E I + + AV+P+L + Q ++ ++++A L ++ + +A Sbjct: 13 DEFCEFLDENIGK------KGAVMPVLQKCQNLFSYIPEPIVDLMALNLGVSSSEIYGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY+QF L P G + VC T C ++G +K+++ +++ + DG +S E Sbjct: 67 TFYSQFSLKPKGE-HEICVCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEAR 125 Query: 140 CQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFSTGQGD 178 C G C AP+V I + +L+ + +II + D Sbjct: 126 CIGQCGIAPVVSIDGNLDIGNLSSADVHKII--LKAKEID 163 >gi|227499380|ref|ZP_03929491.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius ATCC 35098] gi|227218584|gb|EEI83824.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius ATCC 35098] Length = 163 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+P L + Q ++ ++++A L ++ + +ATFY+QF L G + V Sbjct: 26 KGAVMPALQKCQNLFSYIPEPVVDLMALKLGVSSSEIYGVATFYSQFSLKAKGE-HEICV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY- 157 C T C + G +++++ +K+ + + DG ++ E C G C +P+VMI D + Sbjct: 85 CLGTACYVNGADRILKSLSDKLGVEVGDTSQDGKITLSEARCVGECGKSPVVMIDGDEFR 144 Query: 158 EDLTPERLEEIIDAFST 174 E++ +++II+ Sbjct: 145 ENVELSDIDDIINKLRK 161 >gi|56751244|ref|YP_171945.1| bidirectional hydrogenase complex protein HoxE [Synechococcus elongatus PCC 6301] gi|81299089|ref|YP_399297.1| bidirectional hydrogenase complex protein HoxE [Synechococcus elongatus PCC 7942] gi|3947770|emb|CAA73872.1| hoxE [Synechococcus elongatus PCC 6301] gi|56686203|dbj|BAD79425.1| NADH dehydrogenase I chain E [Synechococcus elongatus PCC 6301] gi|81167970|gb|ABB56310.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like [Synechococcus elongatus PCC 7942] Length = 165 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A+I +L AQ G++ R ++ VA L + +V +A+FY FQL+P G R Sbjct: 27 QADALIEILHEAQSLYGYLDRELLQWVAEQLALPRSKVYGVASFYHLFQLNPSG-RHRCH 85 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC T C ++G + +++ ++ + +DG++S V C GAC AP+V+ D Sbjct: 86 VCLGTACYVKGSQAILDCLIAELGIREGETTNDGSVSLGTVRCVGACGIAPVVVYDGDIQ 145 Query: 158 EDLTPE 163 E Sbjct: 146 GRQESE 151 >gi|239815992|ref|YP_002944902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus S110] gi|239802569|gb|ACS19636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax paradoxus S110] Length = 154 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + + + + ++P L Q+ G V A+ ++A +++ V + ++ Sbjct: 3 NLGIAASIAAAHKD--RPGGLLPALHGIQDALGHVPPDAVPLIAEQFNLSRAEVHGVVSY 60 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +P G R VQVC C G + L+ ++ ++DG S E V C Sbjct: 61 YHHFRSAPAG-RLLVQVCRAEACKAMGADALLAHAEQRLGCGVHGTSADGQCSLEPVFCL 119 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEI 168 G C ++P + + + + +TP ++I Sbjct: 120 GLCASSPAIAVNGEVHARITPALFDDI 146 >gi|270307814|ref|YP_003329872.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp. VS] gi|270153706|gb|ACZ61544.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp. VS] Length = 154 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+S Y R +IP+L+ Q + ++SR ++ VA + + V IATFY+QF+L Sbjct: 12 VLSLYEAKRE--NLIPILLAFQRKFSYLSRDMMQSVAVYIGVPESSVYNIATFYSQFRLE 69 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G E+L+ ++ K D +S + + C G C AP Sbjct: 70 PPGI-HKVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + Y L L I+ Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149 >gi|297203643|ref|ZP_06921040.1| formate dehydrogenase [Streptomyces sviceus ATCC 29083] gi|297148464|gb|EDY61257.2| formate dehydrogenase [Streptomyces sviceus ATCC 29083] Length = 225 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 2/134 (1%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + A++P+L Q + G V + A+ V+A L+++ V + TFY F+ P G R V+ Sbjct: 90 ERGALLPVLHAVQAELGHVPQEAVPVLAEELNLSRADVHGVVTFYHDFRREPAG-RTTVR 148 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C G ++L+ R +DG+++ E+V C G C P V Y Sbjct: 149 ICRAEACQALGADQLVSYARES-GLPLGETAADGSVTVEQVFCLGNCALGPSVEANGRLY 207 Query: 158 EDLTPERLEEIIDA 171 + P RL I++ Sbjct: 208 GRVGPARLGSILNG 221 >gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] Length = 780 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V+ +I R SR +IPLL Q++ ++ A+ V ++ +++ ++TFY+ Sbjct: 3 ARVDAIIDRIGTSRRD--IIPLLQALQDEFSYLPSDALLRVYERTEIDRAQLISVSTFYS 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQG 142 QF+ P G + ++VC T C ++G + + R ++ + +D S E++ C G Sbjct: 61 QFRHVPYG-KHIIKVCTGTACHVKGANNVYDAFRRELKMEEDRITTADQEYSIEKIACLG 119 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C AP+V I + Y + P R+ E++D F Sbjct: 120 CCALAPVVQIDEKIYGHVQPGRVNEVLDEFR 150 Score = 42.0 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 30/141 (21%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDM----AYIRVLEIATFYTQFQLSPVGTRAHV 96 A+ P++ ++ G V + V + + AT VG + Sbjct: 122 ALAPVVQIDEKIYGHVQPGRVNEVLDEFRIYNQEHEREEEGNAT------RQIVGE---I 172 Query: 97 QVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 ++ C G ++ + +++ + ++ + V C GAC P++ + Sbjct: 173 RLGMENCCQASGTSEIYQAVIKASDELGIE---------VNIKPVSCVGACNQVPLIDVA 223 Query: 154 K-----DTYEDLTPERLEEII 169 + Y ++ PE ++EI+ Sbjct: 224 HPDGSIERYPNVRPEEIKEIL 244 >gi|289548716|ref|YP_003473704.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM 14484] gi|289182333|gb|ADC89577.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM 14484] Length = 154 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E + + + +P R + A++ L Q+ G + A+E VA IL + V Sbjct: 2 LPQELLEKLRQHVQYFP--RREQAILLCLHEVQDYYGHIPNFALEEVAKILHVPLNHVES 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + FY F + ++VC + C ++L+ + + DG Sbjct: 60 VVAFYDMFDRG-EPAKHRIRVCVSVVCHFMKKDQLLNALKKHLGIDFWQVTKDGRFKLIP 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V+C GAC AP+ MI +DTY+ E+L EI+ + Sbjct: 119 VQCLGACSCAPVFMIDEDTYQFEGEEKLHEILSRY 153 >gi|85707198|ref|ZP_01038284.1| ATP synthase subunit E [Roseovarius sp. 217] gi|85668252|gb|EAQ23127.1| ATP synthase subunit E [Roseovarius sp. 217] Length = 154 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 64/146 (43%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ + + ++P+L Q+ G + AA +A L+++ + + +FY F Sbjct: 9 IQAILTEH--LHLEGPLLPILHAMQDAFGHIPEAAHRPIAEALNISRAELHGVISFYHDF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P G R +++C C G L + K+ ++G ++ E V C G C Sbjct: 67 RANPAG-RHVLKICRAEACQAVGGTALADATLTKLGLDWHGTTANGAVTVEPVYCLGLCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 AP M+ + R++ ++ Sbjct: 126 CAPAAMLDDRVVGRVDAARMDTLLAE 151 >gi|146305427|ref|YP_001185892.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas mendocina ymp] gi|145573628|gb|ABP83160.1| formate dehydrogenase gamma subunit [Pseudomonas mendocina ymp] Length = 164 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%) Query: 18 FSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F+ E V EV++ + A++P+L Q++ G V + ++A L ++ V Sbjct: 8 FAPEQCEAVTREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVH 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + +FY F+ +P G R +++C C G + L +K+ DG+LS+E Sbjct: 66 GVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFE 124 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 V C G C AP VM+ + + + E + ++ Sbjct: 125 PVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159 >gi|195952595|ref|YP_002120885.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp. Y04AAS1] gi|195932207|gb|ACG56907.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp. Y04AAS1] Length = 154 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 3/156 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++E + I +Y S+ ++ ++ L QE G + A+E ++ ILD+ + Sbjct: 2 LTQEIKEAIEGHI-KYFGSKEEAMLLS-LHSIQEHLGHIPEEALEELSEILDIPLHHIKG 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + FY F + + VC + C L K+ + + +P DG E Sbjct: 60 VVAFYEMFDTGEK-AKHRIYVCNSIVCYLLKSHKVFNAVKELLGIEPGQVTRDGMFKLVE 118 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 V+C GAC AP+ M+ DTY + E+L EI+ +S Sbjct: 119 VQCLGACSEAPVFMVDNDTYRYESKEKLHEILAKYS 154 >gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch sediment'] Length = 710 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + +I+++P R ++ ++P L AQ EGW+S ++ VA L + V Sbjct: 1 MTPPEEHTLRTLIAQFP--RERTWLLPALQTAQRAEGWLSPESLATVALHLRVPQSEVYG 58 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A Y +F+L+ G+R V+VC C ++G L+ +N++ + D +++ EE Sbjct: 59 VAGHYPEFRLTKPGSR-LVRVCTGVSCRIQGGLTLLHALQNRLGLTVGETSQDHSVTLEE 117 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 +C C AP+V + Y L +RL+ I + Sbjct: 118 ADCLFRCAMAPVVEVDHRCYGRLDTDRLDSIFN 150 >gi|303248402|ref|ZP_07334662.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302490200|gb|EFL50118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 165 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 3/166 (1%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + + + +I++ + A + ++ Q G++ A+ + +L M + + Sbjct: 1 MALPDALVADLKRMIAQ--AEHPREAAVDVMYALQHHYGYLCDEAVHYASKLLGMTTLEL 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY PVG + VC + C + + + + + P DG + Sbjct: 59 ESLATFYDYLYRRPVG-HYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGMFTV 117 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C NAP ++I Y LTPER++ ++ + +R Sbjct: 118 LPSACIGNCHNAPTMLINGRFYNKLTPERIDAVLRELRETTEEPVR 163 >gi|73748288|ref|YP_307527.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|147669068|ref|YP_001213886.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides sp. BAV1] gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1] gi|146270016|gb|ABQ17008.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1] Length = 154 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+S Y + +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L Sbjct: 12 VLSLYEAKKE--NLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLE 69 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G E+L+ ++ K D +S + + C G C AP Sbjct: 70 PPGI-HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + Y L L I+ Sbjct: 129 TLEVDGKLYTRLNGSSLNRIL 149 >gi|57234744|ref|YP_181190.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides ethenogenes 195] Length = 154 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 3/141 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+S Y + +IP+L+ Q + ++SR ++ V+ + + V IATFY+QF+L Sbjct: 12 VLSLYEAKKE--NLIPILLAFQRKFSYLSRDMMQSVSVYVGVPESSVYNIATFYSQFRLE 69 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G E+L+ ++ K D +S + + C G C AP Sbjct: 70 PPGI-HKVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTPDNEISLDTINCAGICGLAP 128 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + Y L L I+ Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149 >gi|296448074|ref|ZP_06889977.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus trichosporium OB3b] gi|296254431|gb|EFH01555.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus trichosporium OB3b] Length = 184 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + E+I + + +P+L QE+ G+V AA+ +A L+++ + + +F Sbjct: 34 NEARAQEIIDAHLG--LEGPALPILHAIQEEFGYVPEAAVPQIAQSLNISRAEMHGVVSF 91 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +P G R +++C C G EK+ + ++ + +DG+L+ E V C Sbjct: 92 YHDFRRAPAG-RHVLKLCRAESCQSMGSEKIAKDFLERVKLEWGGTANDGSLTVEAVYCL 150 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C ++P + + + E L+E+ Sbjct: 151 GLCAHSPGALYDNEPIGRVDAEMLDELAAEAR 182 >gi|77463675|ref|YP_353179.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1] gi|126462507|ref|YP_001043621.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029] gi|221639518|ref|YP_002525780.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131] gi|77388093|gb|ABA79278.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides 2.4.1] gi|126104171|gb|ABN76849.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17029] gi|221160299|gb|ACM01279.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides KD131] Length = 157 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + R +A++ L Q + GWVS + A L + + Sbjct: 1 MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +A+FY+ PVG R + +C C L G E++ E + ++ +DG + Sbjct: 59 EALASFYSLIFRHPVG-RTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117 Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171 V C G C AP ++G+D L+P + +++ Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155 >gi|332558531|ref|ZP_08412853.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] gi|332276243|gb|EGJ21558.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N] Length = 157 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + R +A++ L Q + GWVS + A L + + Sbjct: 1 MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +A+FY+ PVG + + +C C L G E++ E + ++ +DG + Sbjct: 59 EALASFYSLIFRHPVG-KTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117 Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171 V C G C AP ++G+D L+P + +++ Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155 >gi|327243023|gb|AEA41130.1| putative bifurcating [FeFe] hydrogenase subunit 1 [Clostridium butyricum] Length = 122 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 +I ++ Q++ ++ + +A L ++ ++ +ATFY F L P G + +++C Sbjct: 1 LIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENFSLKPKG-KYVIKICNG 59 Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 T C +R ++E RN + + D + E V C GAC AP+ + + Y ++ Sbjct: 60 TACHVRKSIPILEEFRNILGLCEEKSTTDDMMFTVETVSCLGACGLAPVCTVNDEVYPNM 119 Query: 161 TPE 163 T Sbjct: 120 TKA 122 >gi|91975105|ref|YP_567764.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisB5] gi|91681561|gb|ABE37863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 156 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 3/145 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 E+I+ + + + +L QE G+V AA +VA L+++ + + TFY Sbjct: 10 RAAEIIA--GLTHKEGPTLVILHALQEAFGYVPEAAEPMVAQALNLSRAEIHGVVTFYPD 67 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F+ P G R +++C C G + L ++ ++DG +S E V C G C Sbjct: 68 FRREPPG-RHVLKLCRAEACQAAGGDALAAQAETRLGVTFGATSADGAVSLEPVYCLGLC 126 Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169 AP M+ L RL+ ++ Sbjct: 127 ATAPSAMLDDRVIGRLDTHRLDALM 151 >gi|289432337|ref|YP_003462210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] gi|288946057|gb|ADC73754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp. GT] Length = 154 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 3/141 (2%) Query: 29 VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88 V+S Y + +IP+L+ Q ++SR ++ VA + + V IATFY+QF+L Sbjct: 12 VLSLYEAKKE--NLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLE 69 Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G V VC T C + G E+L+ ++ K D +S + + C G C AP Sbjct: 70 PPGI-HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAP 128 Query: 149 MVMIGKDTYEDLTPERLEEII 169 + + Y L L I+ Sbjct: 129 TLEVDGKLYTRLNGSSLNRIL 149 >gi|89055051|ref|YP_510502.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Jannaschia sp. CCS1] gi|88864600|gb|ABD55477.1| formate dehydrogenase gamma subunit [Jannaschia sp. CCS1] Length = 167 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++ + V+ +I + + ++P+L Q G+V A ++A L++ + + Sbjct: 11 DDLLVEVDAIIQK--NIALEGPLLPILHDVQAAFGYVPDDARALIATALNITEAELHGVI 68 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P G R +++C C G + + ++ +DG L+ E + Sbjct: 69 SFYHDFRRKPAGKR-VLKICRAEACQAMGANAMSDAVLAQLGLGWGETAADGGLTVEPIY 127 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167 C G C P MI +T + L Sbjct: 128 CLGLCACGPAAMIDGKLKGRVTADSLIA 155 >gi|86748475|ref|YP_484971.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2] gi|86571503|gb|ABD06060.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris HaA2] Length = 157 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + + + +A++ L QE EGWVS A ++ A L + + Sbjct: 1 MSLSPAIRTAIAQAAAHHGGPK--AAMLEALKLVQEAEGWVSDAHLKEAAEALGVTTAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q SPVG + +C C L G + + + +++ DG + Sbjct: 59 DSLATFYSQIFRSPVGD-TVILLCDGLSCFLCGGDAVRDAVMSRLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEII 169 + C G C AP+ ++G + LT + L+ +I Sbjct: 118 INICCVGGCDLAPVALVGPERKLVGPLTADDLDALI 153 >gi|116624104|ref|YP_826260.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Solibacter usitatus Ellin6076] gi|116227266|gb|ABJ85975.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus Solibacter usitatus Ellin6076] Length = 170 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++ V R+ R A+I L QE G++ A + VA++L + RV Sbjct: 13 DDKRWKLVEATARRH--GREPHALIETLHTVQECFGYLDEAGLRFVASVLRVPLSRVYGA 70 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 ATFY F L P G R VC T C ++G L+ + KP +DG LS Sbjct: 71 ATFYHFFTLKPKG-RHTCVVCTGTACYIKGAPALLGAIEKQYGIKPGETTADGELSVLTA 129 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G+C AP ++ + + P + I+ Sbjct: 130 RCLGSCGLAPAAVMDQAVLGKIGPAEMLARIEK 162 >gi|320102224|ref|YP_004177815.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644] gi|319749506|gb|ADV61266.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644] Length = 183 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 S E + ++ YP Q+ +P L E V R A+ +A +LD+ +V + Sbjct: 22 LSAELRDRITALLPNYPS--KQAVTLPALHLVHETFRCVPRQAMVEIAELLDLTPAQVHD 79 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +FY F +P+G V +C + C RG ++L+ K+ P SDG L+ E Sbjct: 80 TMSFYGFFHQAPIGD-VRVWICRSISCAARGGDELLTKTCAKLGIHPGETTSDGKLTVEY 138 Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPE-RLEEIIDAFSTGQGDT 179 EC G C +AP + + L E LE ++DA G Sbjct: 139 AECLGICDHAPAALADDGRIFGPLEDESSLEAMLDAVRQGPAPV 182 >gi|90426118|ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris BisB18] gi|90108132|gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 158 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 E+I+ + A + +L QE G+V + AI ++A L+++ V + TFY Sbjct: 11 ERAAEIIAELKS--HEGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYH 68 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ P G R +++C C G + L + DG +S E V C G Sbjct: 69 DFRKVPAG-RHVLKLCLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLEPVYCLGL 127 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C AP M+ L RL+ ++ Sbjct: 128 CATAPSAMLDGRLIGRLDATRLDALLAE 155 >gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 561 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 20/210 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V +++ P R +I L Q+ G +S A + +A L ++ Sbjct: 21 PKGRQLEDQAWEDVKVLLASRP--RRSDLLIEFLHLIQDAYGHLSAAHLRALAEELRLSM 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + G ++VC + C L G + L + Sbjct: 79 AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEGSLDASE---- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + TPE++E I A T P + Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVEAAIAA-----NHTHADIPAYED 185 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKKDDKI 217 ++ AGG TSL + + + +D + Sbjct: 186 FAAYEAAGGYTSLKELRANGDWAQVQDKVL 215 >gi|222054363|ref|YP_002536725.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] gi|221563652|gb|ACM19624.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. FRC-32] Length = 169 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + A + ++ Q GW++ A+ A +L ++ ++V E+ATFY PVG + + V Sbjct: 21 REAAVDVMKELQLHYGWLTDEAVVEAAGLLGLSPLQVEELATFYEMIYRQPVG-KQVIHV 79 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C G E ++ + KP +DG + C G C + P +MIG+ Y Sbjct: 80 CDSISCWAMGGETMMAHLAGLLGIKPGETTADGQFTLLPCACLGNCGDGPTMMIGEKIYG 139 Query: 159 DLTPERLEEIIDAFSTGQGDTI 180 LT L E+I F +T Sbjct: 140 KLTVPLLTEMIGWFRGAAIETP 161 >gi|307822804|ref|ZP_07653035.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] gi|307736408|gb|EFO07254.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter tundripaludum SV96] Length = 159 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 +P S +N +S Y S I L Q+ WVS + VA +LD+ Sbjct: 2 NEPIFEGLSLAEIREINAEMSHYENKTAVS--IEALKIVQKHRRWVSDQCLIAVAELLDI 59 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 + ++ +ATFY PVG + + C + C + G +++ E ++ + ++D Sbjct: 60 SPAQLEGVATFYNLIYRQPVG-KTVIHYCNSVTCWMLGSDQVGESLCRHLNVELGEMSAD 118 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 G + + C GAC +AP+VM+G + D+T + + EI+ Sbjct: 119 GEYTVLPIVCLGACDHAPVVMVGNELKFDITEDAVNEIL 157 >gi|149203816|ref|ZP_01880785.1| ATP synthase subunit E [Roseovarius sp. TM1035] gi|149142933|gb|EDM30975.1| ATP synthase subunit E [Roseovarius sp. TM1035] Length = 154 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 3/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + +++ + + ++P+L Q G++ AA +A L+++ + + +FY F Sbjct: 9 ITSILAAHRD--LEGPLLPILHAMQAAFGYIPEAAHRPIAEALNISRAELHGVISFYHDF 66 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P G R +++C C G L E K+ ++G ++ E V C G C Sbjct: 67 RANPAG-RHVLKICRAEACQAVGGAVLAEATLAKLGLAWHGTTANGAVTVEPVYCLGLCA 125 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 AP M+ + R++ ++ Sbjct: 126 CAPAAMLDDRVVGRVDAARIDALLAE 151 >gi|319937312|ref|ZP_08011719.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807678|gb|EFW04271.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 163 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++S ++++VI R+ + ++ L Q + G++ A+E ++ LD ++ Sbjct: 3 KLNQKSLDFIDDVIYRHKDEKGPIKLM--LHEIQNELGYIPFEAMEKMSEALDEPIAKIY 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY+QF P G + + VC T C + G + ++++ + DG S + Sbjct: 61 GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLVEMTGAPVNGTSQDGVFSID 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTP--ERLEEIIDAFSTGQGDT 179 C GAC AP+V + + T E L+ ++ + + Sbjct: 120 ATRCVGACGLAPVVSVDGTVFGC-TKQLEDLKMLVLDYKKEEAPA 163 >gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b] Length = 574 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 20/210 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + V E++ P R + +I L Q++ G +S A + +A L +A Sbjct: 34 PKGRQLEDHPWQEVQELLGAAP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEELRIAQ 91 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + G ++VC + C L G ++L + + + Sbjct: 92 AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKKALEDGL-------- 143 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE++E I A DT PQ + Sbjct: 144 DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVEAAIAA-----DDTHAHVPQYET 198 Query: 189 ISSAP-AGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG L + + D + Sbjct: 199 YDAYAKAGGYQVLARLREGGDFETVQQDLL 228 >gi|298492585|ref|YP_003722762.1| NADH dehydrogenase 24 kDa subunit ['Nostoc azollae' 0708] gi|298234503|gb|ADI65639.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit ['Nostoc azollae' 0708] Length = 150 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ I R+ Q VI +L RA E G++ + +A+ L + V +ATFY F Sbjct: 1 MDATIKRH--QYQQDTVIEILHRASELFGYLELDLLLYIAHKLKLPPSWVYGVATFYHLF 58 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 L+P G V VC T C ++G + ++ N + S G + C GAC Sbjct: 59 FLAPKGKHNCV-VCTGTACYVKGSQAILSSLENVTKIRAGETTSYGEIYLMTARCLGACG 117 Query: 146 NAPMVMIGKDTYEDLTPERLEE 167 A V+ + TPE + E Sbjct: 118 IASAVVFDGAVLGNQTPESVCE 139 >gi|91975809|ref|YP_568468.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5] gi|91682265|gb|ABE38567.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB5] Length = 157 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + + + +A++ L QE EGWVS A ++ A L + + Sbjct: 1 MSLSPAIKTAIAQAAANHGGPK--AAMVEALKLVQEAEGWVSDAHLKEAAQALGVTTAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+Q PVG + +C C L G + + + +++ DG + Sbjct: 59 ESLATFYSQIFRRPVGD-TVILLCDGLSCYLCGGDAVRDAIMSRLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEII 169 + C G C AP+ ++G + LT + L+ +I Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTADDLDALI 153 >gi|77919442|ref|YP_357257.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM 2380] gi|77545525|gb|ABA89087.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380] Length = 168 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 5/173 (2%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS + ++ P E +++ I P + +I L +AQ G++ Sbjct: 1 MSSCQETQKCGSPQ--DLPEYLFRELDDFIEALPT--KEGHLITALHKAQSLFGYLPEEI 56 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 E VAN +++ ++V + +FYT F + P G + + VC T C ++G +K+++ +N++ Sbjct: 57 QEYVANAMNVPVVQVFGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDAFKNQL 115 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + DG S + + C GAC AP+V++G+ Y ++TP+++++II F+ Sbjct: 116 NVAVSEVTEDGKFSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDIIAEFA 168 >gi|84686200|ref|ZP_01014095.1| ATP synthase subunit E [Maritimibacter alkaliphilus HTCC2654] gi|84665727|gb|EAQ12202.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2654] Length = 160 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 3/153 (1%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 S + EVI Y + + ++P+L E V A++ +A+ L++ V + Sbjct: 8 SAPDLGAIQEVIEAY--THLEGPLLPILHAMMEAFDHVPEDAVQPIADALNIGRAEVHGV 65 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +FY F+ P G R V++C C G L + ++ +G ++ E V Sbjct: 66 ISFYHDFRTLPAG-RHIVKICRAEACQALGANGLADAVLTRLGTSWHGTTPNGAVTIEPV 124 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C N P MIG L +LE +I Sbjct: 125 YCLGLCANGPAAMIGDKVVGALDEAKLERVISE 157 >gi|269926645|ref|YP_003323268.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790305|gb|ACZ42446.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum terrenum ATCC BAA-798] Length = 174 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 +++ SEE VN ++ + ++IP L + Q ++ A +++ + Sbjct: 6 DTWTGSEEDRARVNSILDEFEGQDPMESLIPALHKIQAAYRYIPEEAGHIISERWHIPET 65 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + + +FY+ F P G R + +C C G +L EV ++ + DG Sbjct: 66 DIFNVVSFYSDFSTEPRGKR-VLWICEGAACYFMGGPQLGEVAQSVLGIPYNETTPDGEW 124 Query: 134 SWEEVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 + + C G C AP+V + Y L+PE L +I Sbjct: 125 TLRRADFCFGVCHRAPLVELDHHIYGPLSPEELRALIA 162 >gi|146277731|ref|YP_001167890.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025] gi|145555972|gb|ABP70585.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 S S + + + R +A++ L Q + GWVS + A+ L + + Sbjct: 1 MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDGHLAEAASALGVHRAEM 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +A+FY+ PVG + + +C C L G E++ E + ++ DG + Sbjct: 59 EALASFYSLIFRHPVG-KTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTRDGRYTL 117 Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171 V C G C AP ++G+D L+P + +++ Sbjct: 118 LNVACLGGCDRAPAAVVGRDRRLVGPLSPAGVAALLEE 155 >gi|27378249|ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA 110] gi|27351396|dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 28 EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87 E+I+ + +R + A + +L Q G+V AAI +VA L+++ V + TFY F+ Sbjct: 19 EIIAEH--ARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRH 76 Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G R +++C C G + L ++ + +D ++ E + C G C A Sbjct: 77 KPAG-RHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYCLGLCATA 135 Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171 P M+ L +RL+ ++ Sbjct: 136 PSAMLDGRLVGRLDEKRLDALVAE 159 >gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Hahella chejuensis KCTC 2396] Length = 611 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 14/197 (7%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++A + + + Y + ++ +L + Q++ + A+ ++A + + V + + Sbjct: 4 DNATLIKQACADYDNDPRR--MMDILWQVQDKLRCIDGDAMSLIAALTGTYRVEVEGVVS 61 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F G +++C G + + E + + +P ++DG S E C Sbjct: 62 FYAFFSDKRKGD-ITIRLCDDIVDRHAGAQAVAEAFSDALGIQPGETSADGAFSLEFTPC 120 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP------- 193 G C AP V+I LTP +++ I+ + G D +S P Sbjct: 121 IGMCDQAPAVLINDVVVTRLTPAKVKNILRTLRKTKDPQTLIGKTGDGANSHPLVQAMVR 180 Query: 194 ----AGGLTSLLDNNSK 206 G L D N Sbjct: 181 NNIRQPGPVLLTDANPD 197 >gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6] Length = 566 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P R + +I L Q+ G +S A I +A L Sbjct: 26 PKGRQLDDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDAYGHLSAAHIRALAEELRTGQ 83 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G A ++VC + C L G E+L + + + Sbjct: 84 AEIYEVASFYAHFDVVREGETAPPALTIRVCDSLSCELAGAEQLQKALEDGLDAS----- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + T E++E I A DT P+ + Sbjct: 139 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPEYET 190 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213 ++ GG +L D + + + Sbjct: 191 FAAYEGEGGYATLKDLRANGDWEAVQ 216 >gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein [Cupriavidus metallidurans CH34] gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Cupriavidus metallidurans CH34] Length = 602 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 3/161 (1%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + ++ RY R + ++ +L Q G + + +A L+++ + + E A+FY Sbjct: 3 KDIRTILERYRSDRAR--LMDILWDVQHLYGHIPDEVLPQLAAELNLSPLDIRETASFYH 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G + + +C + + G + + + + + + +G E C G Sbjct: 61 LFHDKPSG-KHRIYLCNSVIAKMNGYQAVHDALERETGVRFGETDPNGMFGLFETPCIGL 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P ++I K + L P ++ +II G+ P Sbjct: 120 SDQEPAMLIDKVVFTRLRPGKIADIIAQLKQGRSPAEIANP 160 >gi|84499615|ref|ZP_00997903.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] gi|84392759|gb|EAQ04970.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597] Length = 162 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 7/161 (4%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 +P+ ++ ++ + A++P+L QE G + A ++ L + Sbjct: 1 MRPAPPPTPDDIQAVIDT------ERHREGALLPILHALQEAYGHIPEGAYPLLTATLGI 54 Query: 71 AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130 + + +FY F+ P G R V+VC C G + ++ D Sbjct: 55 TRAELHGVVSFYHDFRDVPAG-RHVVKVCRAEACQSVGANAMAATLLDRFGLDWHGTTPD 113 Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G ++ E V C G C P M+ P +L + Sbjct: 114 GRVTIEPVYCLGLCACGPAAMVDGKLIGRADPAKLAAALSE 154 >gi|224825581|ref|ZP_03698686.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella nitroferrum 2002] gi|224602502|gb|EEG08680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella nitroferrum 2002] Length = 159 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 5/160 (3%) Query: 19 SEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +E+ + ++ + A++P+L Q+ G++ A+ +A L + V Sbjct: 3 TEQDLAHASLQAILQTH--QNQPGALLPILHDVQDTLGFIPDWAVADIAKALSQSRAEVH 60 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 + TFY F+ +P + +Q+C C RG +L + R++D ++ E Sbjct: 61 GVITFYHHFRTTPP-AQHTLQICQAEACQARGSRELTAHAEQVLGCSLHGRSADQSIGLE 119 Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 V C G C + P + + + +L+ ++ Q Sbjct: 120 PVYCLGLCSSGPNIQLNDKMVSRVDAAKLDRLLANVKEAQ 159 >gi|225849103|ref|YP_002729267.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644487|gb|ACN99537.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense Az-Fu1] Length = 160 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 5/157 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ +++ + R+P + AVI L + ++ ++ +++ L + + Sbjct: 6 LTQDIKERIDKYLERFPV--KEQAVIQSLHLIYSKYRDITLEHMQELSDYLQVPLAHIEG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 I +FY F++ R H++VC PC + GC+KL+E+ +K + +G E Sbjct: 64 IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLLELFEKLTGEKANEESKNGRFYIET 122 Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172 VEC G+C AP MI D Y+ + +L EI+ + Sbjct: 123 VECIGSCSVAPAFMIDDDLYDGTKINEGKLNEILSKY 159 >gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101] Length = 569 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 20/209 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + V ++ P R +I L Q++ G +S A + +A + ++ Sbjct: 30 KGRQLDDAAWDQVRALLGDKP--RRADLLIEHLHLIQDEYGHLSAAHLRALAEEMRLSMA 87 Query: 74 RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 V E+ATFY F + G +++C + C + G ++L + Sbjct: 88 EVYEVATFYAHFDVVKEGEVPPPALTIRICDSLACEMAGAQELKAALEEGLDAT------ 141 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP + IG + + T E++E +I A GD P + Sbjct: 142 --QVRVVRAPCIGRCDTAPALEIGHNFVDHATVEKVEAVIAA-----GDIHVHVPDYEDF 194 Query: 190 SSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217 ++ GG +L + + +D + Sbjct: 195 AAYSNDGGYETLKTLRATGDWEAVQDQLL 223 >gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Dinoroseobacter shibae DFL 12] Length = 565 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P ++++ + EV+ P R + +I L Q++ G +S A + +A + ++ Sbjct: 25 PKGRQVTDQAWAELREVLGDRP--RRRDLLIEFLHLIQDRYGHLSAAHLRALAEEMRLSQ 82 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F + G ++VC + C L G + L + P Sbjct: 83 AEVYEVASFYAHFDVVKEGESPPPALTIRVCDSLSCELAGAQALKSALED--GLDPGQ-- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + + TPE++++ I A T P + Sbjct: 139 ----VRVLRAPCMGRCATAPVLELGHNHIDHATPEKVQQAIAA-----NHTHPTIPDYET 189 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKK 213 +++ A GG L D + + + Sbjct: 190 LAAYRAEGGYGVLRDLRASGDWEVVQ 215 >gi|225850512|ref|YP_002730746.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Persephonella marina EX-H1] gi|225645271|gb|ACO03457.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) [Persephonella marina EX-H1] Length = 162 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + ++ ++++P Q A+IP L ++ + A+ +A+ L + + Sbjct: 7 LTPDILERIDRHLNKFP--FPQQAIIPSLHDILDKYRDIPDQAVFELADYLKVPPSDIEG 64 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 I +FY F+ R H+++C PC L + L+E +N + DG E Sbjct: 65 IVSFYDMFR-HKKNARNHIRICRNLPCHLGKYQLLLEKIKNLTGADIGKNSPDGKWYIEL 123 Query: 138 VECQGACVNAPMVMIGKDTYED---LTPERLEEIIDAF 172 VEC G+C AP +I D Y+ ++ E L++I+ + Sbjct: 124 VECIGSCAIAPAFLINDDLYDGSKIVSEEDLKKILSRY 161 >gi|90425543|ref|YP_533913.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18] gi|90107557|gb|ABD89594.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisB18] Length = 157 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + + ++ + + + ++ +A++ L Q EG+VS A + A++L ++ + Sbjct: 1 MTLNPQTTQAIRKAADSHGGAK--AAMLEALKLVQAVEGYVSDAHLAEAASVLGVSTAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+ SPVG + +C C L G + + + ++ DG + Sbjct: 59 DSLATFYSHIFRSPVGE-TVILLCDGLSCYLCGGDAVRDAVMQRLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII 169 V C G C AP ++ + L+ + L ++I Sbjct: 118 INVCCIGGCDVAPAALVGPDRRLVGPLSADDLNQLI 153 >gi|115523731|ref|YP_780642.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53] gi|115517678|gb|ABJ05662.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas palustris BisA53] Length = 157 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + S ++ + + + + +A++ L Q EGWVS A + A +L + + Sbjct: 1 MTLSAQTQQAIRDAAVHHGGPK--AAMLEALKLVQAAEGWVSDAHLAEAAGVLGVTTAEI 58 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 +ATFY+ SPVG + +C C L G + + + K+ DG + Sbjct: 59 DSLATFYSHIFRSPVGE-TVLLLCDGLSCYLNGADDVRDAVMQKLGIGFGETTPDGKFTL 117 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 V C G C AP ++ + L+ L +I+ Sbjct: 118 INVCCVGGCDRAPAALVGPDRQLIGPLSAADLTALIEG 155 >gi|169334686|ref|ZP_02861879.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM 17244] gi|169257424|gb|EDS71390.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM 17244] Length = 160 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 5/163 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYI 73 EE +I Y S ++ ++++ Q Q +++ + +A+ + + Sbjct: 1 MKLPEEIKKVCKNIIEYY--DNNPSDLLQIVLKIQRQIPGKFINFDIAKYIADEMQIPLS 58 Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +V E+ T++ G + + +C T C L G +K+ E+ ++ K DG Sbjct: 59 KVSEVVTYFDALSTKKRG-KYILGLCNATACSLNGKDKIKEIFERELGIKEGETTEDGLF 117 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + E V C GAC AP V + + L E+++ +I + Sbjct: 118 TLELVPCFGACDVAPAVRVNDNVVGRLNEEKIKALIAKLKGAK 160 >gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB] Length = 607 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 6/169 (3%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIA 79 + + VI+ +R ++ +L + G + + + +A +D+ + Sbjct: 3 TVQDIENVIAARGNAREH--LMAILRDLENLSGRNVLDVSVLNTLAMKMDLPQSAISGFT 60 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FYT F P + ++VC + PC + G + +V N + + +DG EE E Sbjct: 61 SFYTMFSTEPR-AKFIIRVCKSGPCHVMGARTIFDVIENHLGIRAGETTADGLFHLEECE 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD-TIRPGPQID 187 C G C AP +M+ D + +L+ ++EI+D++S + GP I+ Sbjct: 120 CLGLCSAAPAMMVNYDMHGNLSESNIKEILDSYSAREPAFKAEYGPGIE 168 >gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107] Length = 576 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++I P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E L + + + Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGLDAS----- 148 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE+++ I A DT P + Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHIPAYET 200 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213 ++ GG +L D + + + Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAVQ 226 >gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193] Length = 566 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 20/207 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P R + +I L Q+ G +S I +A + Sbjct: 26 PKGRQLEDQAHSEVLELLGEQP--RSRDMLIEFLHLIQDAYGHLSAPHIRALAEEMRTGQ 83 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E+L + + + Sbjct: 84 AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLQKALEDGLDAS----- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + T E++E I + DT P + Sbjct: 139 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATLEKVEAAIAS-----DDTHAHIPDYET 190 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKKD 214 ++ GG +L + + ++ Sbjct: 191 FAAYEAEGGYATLKELRGGGNWEAVQE 217 >gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis 2.10] Length = 576 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++I P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E L + + + Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGLDAS----- 148 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE+++ I A DT P + Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHIPAYET 200 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213 ++ GG +L D + + + Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAAQ 226 >gi|116515041|ref|YP_802670.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256895|gb|ABJ90577.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%) Query: 16 FSFSEESAIWVNEVISR---YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 F S+ + +++++ + Y S Q+A I L QE W+ + +I ++ IL + Sbjct: 2 FELSK---LEISKILKKKKCYVNS--QAACIEALKIVQEHRKWICKDSIIAISKILSIPA 56 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 V IATFY PVG R ++ C + C + + + + + ++ P SD Sbjct: 57 CEVESIATFYCHIFRKPVG-RNIIRYCDSVVCFINNFKSIKKKLKYILNISPGETTSDCR 115 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC P++++ K Y LT + L I+D + Sbjct: 116 YTLLPTCCLGACDKGPVMLVNKTLYTRLTSKMLINILDKYK 156 >gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11] Length = 576 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V E++ P R + +I L Q++ G +S A I +A L Sbjct: 36 PKGRQLEDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDKFGHLSAAHIRALAEELRTGQ 93 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G ++L + + + Sbjct: 94 AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQQLQKALEDGLDAS----- 148 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + T E++E I A DT P + Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPDYET 200 Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213 ++ GG +L D + + + Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAVQ 226 >gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217] Length = 568 Score = 157 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 20/198 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V ++ P R + +I L R Q+Q G +S A + +A + ++ Sbjct: 24 PKGRQLEDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDQFGHLSAAHLRALAEEMRLSQ 81 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F + G ++VC + C L G + L + P Sbjct: 82 AEVYEVASFYAHFDVIREGETPPPALTIRVCDSLSCELAGAQALKSALED--GVDPGQ-- 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-D 187 + C G C AP+V +G + TPE + + A GDT P+ Sbjct: 138 ----VRILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPEYEG 188 Query: 188 RISSAPAGGLTSLLDNNS 205 + AGG +L D + Sbjct: 189 FEAYRAAGGYATLADLRA 206 >gi|162148251|ref|YP_001602712.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter diazotrophicus PAl 5] gi|209542891|ref|YP_002275120.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161786828|emb|CAP56411.1| putative NADH-quinone oxidoreductase chain E [Gluconacetobacter diazotrophicus PAl 5] gi|209530568|gb|ACI50505.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 164 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 7/162 (4%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P E A V + YP + A L Q + GWV A + ++++ ++ Sbjct: 6 PPLPPDLKAEIAAMVRA--ADYPRAVSVGA----LAAVQARFGWVCDAHLAELSDLTGLS 59 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 + +ATF+ PVG R + +C + C + G + L +++ +P DG Sbjct: 60 VADLDGVATFFNLIFRRPVG-RHVIMMCDSVSCWIMGRDALCARLCDRLGIRPGQTTPDG 118 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 ++ + C G C +AP +++ + + D+ ++ I D Sbjct: 119 AVTLLPIVCLGHCDHAPALLVDRTLHGDVDEAGIDRIADNVR 160 >gi|323139482|ref|ZP_08074530.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp. ATCC 49242] gi|322395284|gb|EFX97837.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp. ATCC 49242] Length = 157 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 E+I+ + + +P+L + G V AA+ +A L++ + + TFY Sbjct: 10 ERAREIIAAH--MGLEGPALPILHALMAEFGHVPEAAVREMAEALNITRAEMHGVVTFYH 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F P G R +++C C G EK + K+ + DG+L+ E V C G Sbjct: 68 DFHREPHG-RHTLKICRAESCQSMGAEKQAKDFLAKLKLEWGQTTPDGSLTVEPVYCLGL 126 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C ++P + + + +L+EI+ Sbjct: 127 CAHSPSALFDGEPIGCVDAAKLDEIVAE 154 >gi|294140412|ref|YP_003556390.1| NADH dehydrogenase I subunit E [Shewanella violacea DSS12] gi|293326881|dbj|BAJ01612.1| NADH dehydrogenase I, E subunit [Shewanella violacea DSS12] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 3/172 (1%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 ++ + +S S ++++++ P + I L Q+Q GWVS ++ ++ Sbjct: 59 KITNRQAVDNSPQLSPCEIKQLDKLLASAP--YPAAVSIDALKVIQQQRGWVSDTSLSLL 116 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 + + ++ + +ATFY VG + C C L G ++ K+H P Sbjct: 117 SAYIQVSVAELDSVATFYNLIFRQAVGE-VVLHPCDGISCDLMGGVEVRAAISQKLHINP 175 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 D + + C GAC AP+++ K Y LT ++ ++ID + Sbjct: 176 GETTPDNRFTLIPLPCLGACDKAPVMIASKHVYPHLTLNKIAQLIDELDGDK 227 >gi|163751849|ref|ZP_02159064.1| ATP synthase subunit E [Shewanella benthica KT99] gi|161328265|gb|EDP99427.1| ATP synthase subunit E [Shewanella benthica KT99] Length = 178 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 4/172 (2%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 R+ SS S ++++++ P + I L Q+Q GWVS A + ++ Sbjct: 10 RILPSNGDDSS-QLSPCEIKQLDKLLASAP--YPAAVSIDALKLIQQQRGWVSDACLSIL 66 Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 + + ++ + +ATFY VG + C C L G ++ K+H +P Sbjct: 67 SAYIHVSIADLDSVATFYNLIFRQAVGE-IVLHPCDGISCDLMGGVEVRAAISQKLHIEP 125 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 D + + C GAC AP+++ K Y LT + ++ID + Sbjct: 126 GETTPDKRFTLIPLPCLGACDKAPVMIASKQVYPHLTVRNIAQLIDELEENK 177 >gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149] Length = 568 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 20/210 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + V ++ P R +I L + Q+ G +S A + +A + M+ Sbjct: 29 KGRQLQDTAWDEVRALLGDAP--RRADLLIEHLHKIQDTHGCLSAAHLRALAEEMRMSMA 86 Query: 74 RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 + E+ATFY F + G ++VC + C L G ++L N ++ Sbjct: 87 EIYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQELKAALENGLNP------- 139 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 G + C G C AP++ +G + TPE++ I A GDT P + Sbjct: 140 -GEVRVLRAPCMGRCDTAPVLELGHAHIDHATPEKVTAAIAA-----GDTHVHIPSYETF 193 Query: 190 S-SAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 S GG +L +K ++D ++ Sbjct: 194 SDYVAEGGYETLKTLRETGDWEKVQEDVLA 223 >gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37] Length = 561 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V +++ P R + +I L Q++ +S A + +A + ++ Sbjct: 21 PKGRQVEDKAWAEVRDLLGDRP--RRRDLLIEFLHLIQDEYRCLSAAHLRALAEEMRLSM 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + G ++VC + C L G E+L E N P Sbjct: 79 AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLREALEN--GMDPAQ-- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + TPE++E I A G+T P + + Sbjct: 135 ----VRVMRAPCMGRCDTAPVLELGHNHIGHATPEKVEAAIAA-----GETHAPVERYET 185 Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218 +S+ GG + L ++ ++ ++ ++ Sbjct: 186 LSAYLEEGGYSELKALRAEGDWEEVQEKILA 216 >gi|170740590|ref|YP_001769245.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium sp. 4-46] gi|168194864|gb|ACA16811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium sp. 4-46] Length = 157 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 A +I+ + ++ + A +P+L QE+ G+V + A+ ++A+ L+++ V TF Sbjct: 8 DAARAAGIIAEH--AQLEGATLPILHALQERFGYVDQGAVALIADALNLSKAEVHGCITF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ P G R V++C C G + L + +DG ++ E V C Sbjct: 66 YHDFRAEPAGRR-VVKLCRAEACQAVGADALHAEILGRYGVGWHGTTADGAVTIEPVFCL 124 Query: 142 GACVNAPMVMIGKDTYEDLTPE 163 G C P ++ L E Sbjct: 125 GLCACGPAALVDGAPVARLDAE 146 >gi|294678553|ref|YP_003579168.1| NAD-dependent formate dehydrogenase subunit gamma [Rhodobacter capsulatus SB 1003] gi|294477373|gb|ADE86761.1| NAD-dependent formate dehydrogenase, gamma subunit [Rhodobacter capsulatus SB 1003] Length = 150 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 5/151 (3%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + +++ + + A++P+L Q G++ A +A L + V + FY Sbjct: 5 ARLRAILAAH--RGREGALLPILHDVQAAFGFIPEDAYAPIAADLGLTRAEVAGVVGFYH 62 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ +P G R +++C C G + + + + + + ++ E V C G Sbjct: 63 DFRKAPAG-RHVIKLCRAEACQAMGMDAVQARLESALGLRLGDSSE--AVTLEAVYCLGL 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C AP M+ L + I+ Sbjct: 120 CACAPAAMVDDRLVGRLDAAAVAGIVAELGA 150 >gi|189219242|ref|YP_001939883.1| NAD-dependent formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] gi|189186100|gb|ACD83285.1| NAD-dependent formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] Length = 159 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + ++ Sbjct: 25 KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 83 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C GC K+I + + +DG L+ C G C N P V + Y Sbjct: 84 ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 143 Query: 158 EDLTPERLEEIIDA 171 + +++E+++ + Sbjct: 144 GRVNTQKMEKLLAS 157 >gi|161075749|gb|ABX56622.1| formate dehydrogenase gamma subunit [Methylacidiphilum infernorum V4] Length = 153 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + +IP + QE+ G++ + I +A+ +++ + TFY F+ P G + ++ Sbjct: 19 KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 77 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 +C C GC K+I + + +DG L+ C G C N P V + Y Sbjct: 78 ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 137 Query: 158 EDLTPERLEEIIDA 171 + +++E+++ + Sbjct: 138 GRVNTQKMEKLLAS 151 >gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh 114] Length = 560 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + V +I P R +I L Q+ G +S + +A ++ ++ Sbjct: 20 PKGRQYDDVALEEVQALIGSRPLDR--DLLIEFLHLIQDAYGHLSARHLRALAEVMRLSM 77 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + ++VC + C L G ++L + P Sbjct: 78 AEVYEVATFYAHFDVVKENETPPPALTIRVCDSLSCELAGAQQLKAALED--GLDPTE-- 133 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + TPE++ I A T P + Sbjct: 134 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVRAAIAA-----NHTHADIPDYET 184 Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 + GG T+L D + +D ++ Sbjct: 185 FAKYQAEGGYTALQDLRENGDWEAVQDKVLA 215 >gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum ferrodiazotrophum] Length = 624 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 14/194 (7%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 ++ + +++ + AVIP+ E+E +VS A+E++ I + +L + T Sbjct: 7 DTKQDLEKILQEW--DNPGQAVIPMFHYFMERENYVSPEALELIGQITGFSQSDLLGVGT 64 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 FY F G R ++VC TPC+ G + L+ + ++ DG S + +C Sbjct: 65 FYQYFSFHKEG-RHIIRVCLATPCVYCGGKGLLSALQKELGIGLDETTPDGVFSLKPAQC 123 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 G C AP ++I + + ++TP + ++ + G+ + P P + P G L Sbjct: 124 VGQCHEAPTLVIDTNIHNNVTPGEIPALLKQYREGK---VSPQP------AVPMGPP--L 172 Query: 201 LDNNSKKRGKKKKD 214 ++ G K K+ Sbjct: 173 VNEPVVFTGLKAKE 186 >gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM] Length = 561 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 20/210 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++ P R + +I L Q+ G +S A + +A L +A Sbjct: 21 PKGRQLDDQAWDEVRALLGDRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEELRVAQ 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+ATFY F + G ++VC + C L G E+L + P Sbjct: 79 AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLACELAGAEQLKSALES--GLDPAE-- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + + TPE++E I GDT P Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVEAAIAV-----GDTHAHLPDYQT 185 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKI 217 + + A GG L + + + + Sbjct: 186 LDAYRAEGGYARLAEIRDGGDFETIQQTLL 215 >gi|114566550|ref|YP_753704.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337485|gb|ABI68333.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 148 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+I++Y +I + ++ AI A + ++ IATFY+ F Sbjct: 5 KEIIAQY--DGKAGGIIEAYHALLREFSYLPEEAIAEAARVFKLSTAEAYGIATFYSMFS 62 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + G + V++C + PC + G ++ ++ K +DG + E EC G C Sbjct: 63 VEARG-KNVVRICESAPCHVAGAADVVAALERELGIKMGESTADGKFALEFTECVGQCQA 121 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173 P++ + Y D++P ++ II + Sbjct: 122 TPVITVNGKPYLDVSPAQIPAIIAEYK 148 >gi|325971422|ref|YP_004247613.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] gi|324026660|gb|ADY13419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp. Buddy] Length = 164 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 9/158 (5%) Query: 21 ESAIWVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78 + + + +++ + R A++ +L Q + ++S+ + +VA +++ V + Sbjct: 3 DRHVAIEAIVASHRTER--GALLSILEAVQRTNEHNYLSKEELILVAKAMEVPLSTVYSV 60 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----RNSDGTLS 134 ATFY F L P G + VC T C RG + L++ +++ + D + Sbjct: 61 ATFYAFFNLKPQGE-HVITVCRGTACHTRGSKPLLQQVLKQLNLELDEEGTATTDDVRFT 119 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 V C G C AP++ I + +T ++L +++ Sbjct: 120 VHTVACFGQCALAPVIAIDSVIHSRVTEQKLTQLLQTL 157 >gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.] Length = 561 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 20/209 (9%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 +P + + V +++ + P R + +I L Q+ G +S A + +A + Sbjct: 18 RVRPKGRQLDDLAWSQVQDLLGQRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEEMR 75 Query: 70 MAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++ V E+ATFY F + G V+VC + C L G +L E + + K Sbjct: 76 LSQAEVYEVATFYAHFDVVKEGETPPPALTVRVCDSLSCELAGAAQLQEALQQGLDPK-- 133 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 ++ C G C AP++ +G + TPE++ I A G T P Sbjct: 134 ------SVRVVRAPCMGRCDTAPVLELGHHHIDHATPEKVLAAISA-----GHTHAESPD 182 Query: 186 IDRISSAP-AGGLTSLLDNNSKKRGKKKK 213 + +++ AGG L + + ++ + Sbjct: 183 YEDLAAYRSAGGYARLEELRAGGDWQEVQ 211 >gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 745 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR A+ P +++ + ++ SR + +I L Q++ G +S A + Sbjct: 194 RRRAKPT--PKGRQIDPKASEEIEFLLE--GKSRRRDMLIEYLHLIQDKWGQISAAHLAA 249 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +A+ + +A+ V E+ATFY F + G ++VC + C + G E L++ +NK Sbjct: 250 LADEMKLAFAEVFEVATFYAHFDVVKEGAPDIAPVTIRVCDSLTCAMLGAETLMKELKNK 309 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + C G C AP +G + + T ++ ++ A Q DT Sbjct: 310 AGPG---------VRVVRAPCVGRCDTAPAAEVGHNFVDHAT---VDNVLAALK--QHDT 355 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 P S A G +LL NS + GK K+D + Sbjct: 356 HVHVPDYVEYESYIAQGGYTLL--NSLRSGKTSKEDIL 391 >gi|160936611|ref|ZP_02083978.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC BAA-613] gi|158440402|gb|EDP18147.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC BAA-613] Length = 164 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 8/162 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIR 74 + E + + ++ +L Q ++ +VA + M R Sbjct: 6 QLTAEEKRAIIR-----DNGGDKEHLLAILYELQNASGYNYIDEETAALVAEEVGMNPTR 60 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 V +I TFY + P R ++VC +TPC E++ ++ + ++ DG + Sbjct: 61 VYDIITFYAMLKTEPK-ARYVLKVCNSTPCHFSRSEEIAQILKEELGVGIGETTEDGVFA 119 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + + C GAC P++ + Y +L ++ +++ +G+ Sbjct: 120 YHYIPCVGACDIGPVIKVKDTVYGNLDRRKIRQLLADLRSGK 161 >gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum] Length = 627 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E++A E++ + S + AV+PLL E++ ++S A + ++ + ++ +L I Sbjct: 10 EKNARSEKEILEEW--STPEQAVLPLLHYYMEKKNYISEADVSRISQLTGLSVSDILGIG 67 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F P G + V+VC TTPC+ RG +K E + DG + + Sbjct: 68 TFYQHFVFHPTG-KNSVRVCLTTPCLFRGGKKTFETLSKSLGIGLEETTPDGLFTLYPAQ 126 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C G C AP I D Y + PE++ I+D + G+ Sbjct: 127 CLGQCSEAPSFSINDDVYVGIPPEKIPSILDEYRKGK 163 >gi|307292623|ref|ZP_07572469.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium chlorophenolicum L-1] gi|306880689|gb|EFN11905.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium chlorophenolicum L-1] Length = 155 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E++ + + + R + ++PLL QE+ G++ AAI +A L+++ V + Sbjct: 4 EDTVRLIEDWTKAH--GRTRDRLLPLLHMLQEEIGFIDDAAIPAIAENLNLSRADVHGVV 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ +P G R V+ C C RG + + ++ DG ++ E + Sbjct: 62 TFYHDFRRAPAG-RHVVKFCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C P ++ + LE I + Sbjct: 121 CLGLCAIGPNALVDGKPVARIDQAALERIAQEIAA 155 >gi|298528243|ref|ZP_07015647.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298511895|gb|EFI35797.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 153 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 +++VI Y + + + LL +E G+V + +++ L++ R IATF++Q Sbjct: 5 LDKVIENYHEN--EGNALTLLQDLEENFGYVPEETVYELSDRLNIPPSRFFGIATFFSQL 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGAC 144 L P G + + VC TPC ++G EK++ R ++ + D + EEV C GAC Sbjct: 63 HLKPRG-KNIITVCRGTPCHVKGSEKILSRMRMELDIPSGEETSEDRMFTVEEVNCVGAC 121 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 AP+V+I + ++ +++ + ++ + Sbjct: 122 GMAPVVVINQQVQGEVNIKKMMKEVNELRAEE 153 >gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha carboxidovorans OM5] Length = 570 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 22/209 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P ++ + E+++ S + +I L Q++ G +S A + +A+ + +++ Sbjct: 26 PKGRQIDPRASGEIEELLA--GKSHRRDMLIEHLHLIQDKWGQISAAHLAALADEMKLSF 83 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + G ++VC + C + G + L++ +NK + Sbjct: 84 PEVFEVATFYAHFDVVKEGEPDIPPLTIRVCDSLTCAMLGADTLMKELQNKAGPE----- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C +AP+ +G + ++ TP ++ + +GDT P Sbjct: 139 ----VRVVRAPCVGRCDHAPVAEVGHNFIDEATPAKVLA-----AADEGDTHAHVPDYIE 189 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 S A G +LL NS + G+ K+D + Sbjct: 190 YDSYVAQGGYALL--NSLRSGQTSKEDIL 216 >gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I] Length = 562 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V +++ P R + +I L Q++ G +S A I +A + Sbjct: 22 PKGRQVDDIALSEVQDLLGDRP--RNRDLLIEFLHLIQDKYGHLSAAHIRALAEEMRTGQ 79 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G ++L + + + Sbjct: 80 AEIYEVASFYAHFDVVKEGEAPPPELTIRVCDSLSCELAGAQQLQKALEDGLDAS----- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + T E++E I A GDT P + Sbjct: 135 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----GDTHAHIPAYET 186 Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKK 213 + GG +L D + + + Sbjct: 187 FADYEAEGGYAALKDLRANGDWEAVQ 212 >gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45] Length = 570 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 20/210 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V ++ P R + +I L Q++ G +S A + +A + ++ Sbjct: 30 PKGRQLQDAAWEEVRALLGERP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEEMRLSM 87 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F + G ++VC + C L G + L + Sbjct: 88 AEVYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEEGLDPT----- 142 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + + TPE+++ I A DT P + Sbjct: 143 ---QVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVQAAIVA-----QDTHAQLPDYEP 194 Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217 S GG +LL + ++ + Sbjct: 195 YQSYMNTGGYEALLSLRAGGDWGAVQEQLL 224 >gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit [Silicibacter sp. TrichCH4B] Length = 580 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ + +++ P R + +I L Q++ G++S A I +A + Sbjct: 40 PKGRQLDDQAHSEILDLLGERP--RDRDLLIEFLHLVQDKFGYISAAHIRALAEEMRTGQ 97 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E+L + ++ Sbjct: 98 AEIFEVASFYAHFDVVKEGENPPPALTIRVCDSLSCELAGAEQLKKALEEGMNP------ 151 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID- 187 + C G C AP++ IG + ++ T E++E I A DT P + Sbjct: 152 --AKVRVLRAPCMGRCDTAPVLEIGHNHIDNATVEKVEAAIAA-----DDTHVHVPPYEI 204 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 A AGG L + + + ++ +S Sbjct: 205 YREYAIAGGYEVLKNLRAHGDWEAVQETVLS 235 >gi|294146590|ref|YP_003559256.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium japonicum UT26S] gi|292677007|dbj|BAI98524.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium japonicum UT26S] Length = 155 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 3/155 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EE+A + + + R + ++PLL QE+ G++ AI+++A L++ V + Sbjct: 4 EETARLIEDWTQTH--GRTRDRLLPLLHMLQEEIGFIDGNAIKIIAEKLNLTRADVHGVV 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY F+ +P G R V++C C RG + + ++ DG ++ E + Sbjct: 62 TFYHDFRRAPAG-RHVVKLCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C P ++ + L+ I + Sbjct: 121 CLGLCAVGPNALVDGRPVARIDAAALDRIAQEVAA 155 >gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16] gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia eutropha H16] Length = 602 Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 3/160 (1%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + ++ RY R + +I +L Q + G + A + + L ++ + + E A+FY Sbjct: 4 RITTILERYRSDRTR--LIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYHF 61 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 F P G + + +C + + G + + E + + + +G + C G Sbjct: 62 FLDKPSG-KYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGLS 120 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P ++I K + L P ++ +II G+ P Sbjct: 121 DQEPAMLIDKVVFTRLRPGKITDIIAQLKQGRSPAEIANP 160 >gi|226227789|ref|YP_002761895.1| putative formate dehydrogenase gamma subunit [Gemmatimonas aurantiaca T-27] gi|226090980|dbj|BAH39425.1| putative formate dehydrogenase gamma subunit [Gemmatimonas aurantiaca T-27] Length = 166 Score = 154 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 3/151 (1%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + +++++ P ++P+L + Q G+VS+ A+ +A +++ V + TF Sbjct: 8 EQAVIADLLAQSPTG--AEHLLPVLQQVQATVGFVSQDAMRQIAQAFNISRADVYGVVTF 65 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 YT + +PVG +Q+C C GC +L + + +D + E C Sbjct: 66 YTDLREAPVGQ-YVMQLCMAEACQSVGCRELAAHATHVLGVPLGQTTADHRIHLEAAYCF 124 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 G C P + I +TP R +E++ Sbjct: 125 GNCALGPTMRIDDRIVGGVTPARFDELLAEL 155 >gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2] Length = 563 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 20/214 (9%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 +P + + V ++ P R + +I L Q+ G +S A + +A + Sbjct: 18 RHRPKGRQLDDAAWAEVQALLGDRP--RHRDLLIEFLHLIQDAHGCLSAAHLRALAEEMR 75 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++ V E+ATFY F + G +++C + C L G ++L + + Sbjct: 76 LSQAEVYEVATFYAHFDVVKEGEPVPPALTIRICDSLSCELAGAQQLKTALEDGLDASE- 134 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + C G C AP + +G + + T +++ I A GDT P Sbjct: 135 -------VRVLRAPCMGRCDTAPALELGHNHIDHATFDKVAAAIAA-----GDTHAHVPD 182 Query: 186 IDRISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218 + S+ A GG L + +D ++ Sbjct: 183 YEGYSAYVANGGYAQLQALREGGDWEDVQDKVLA 216 >gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1] Length = 570 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 20/209 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 E++ V +++ P R +I L Q++ G +S A + +A + M+ Sbjct: 31 KGRQLQEDAWDDVRALLADKP--RRADLLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMA 88 Query: 74 RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 V E+ATFY F + G +++C + C L G + L + + Sbjct: 89 EVYEVATFYAHFNVVKEGETPPPALTIRICDSLSCELAGAQALKTALEDGLDASE----- 143 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP + IG + + T E+++++I A GDT P + Sbjct: 144 ---VRVVRAPCMGRCDTAPALEIGHNFVDHATLEQVKQVIAA-----GDTHVHMPDYEAF 195 Query: 190 SSAPAGGLT-SLLDNNSKKRGKKKKDDKI 217 + AGG +L + + + + Sbjct: 196 DAYVAGGGYEALKKLRRDGDWEDVQQNLL 224 >gi|296127183|ref|YP_003634435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira murdochii DSM 12563] gi|296018999|gb|ADG72236.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira murdochii DSM 12563] Length = 163 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 5/156 (3%) Query: 18 FSEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +EES + ++ ++ + + +I + Q+ G+V R + V+ +++ R+ Sbjct: 8 LTEESIADEIKALVEKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEQINIPLARIY 65 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSW 135 EI TFY F + P ++ VC T C L+G +L+E + K++ K + ++D Sbjct: 66 EILTFYNYFTMEPPAE-NNIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKL 124 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 EEV C G C AP++ D + + + + I+ Sbjct: 125 EEVRCIGCCGLAPVITFNGDVSGRVVVDDISKFIED 160 >gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium HTCC2150] Length = 562 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 21/209 (10%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 QP + + + V ++ P R + +I L Q++ G +S A + +A + Sbjct: 18 RNQPKGRQYEDGAMAEVRALLGDKP--RDRDLLIEHLHLIQDEYGHLSAAHMRALAEEMR 75 Query: 70 MAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 ++ V E+A FY+ F + ++VC + C L G + L+ ++ + Sbjct: 76 LSQAEVYEVAKFYSHFDVVKEDEIAPPDLTIRVCDSLSCELAGAQALMAALKDGL----- 130 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + C G C AP++ IG + + TP+ +E+ I A DT P+ Sbjct: 131 ---DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPQLVEKAIAA-----QDTHAHIPE 182 Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214 + + A G + + + + G D Sbjct: 183 YETFDAYHAAGGYA--ELAALRGGSMTPD 209 >gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 634 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + AV+PLL E++ ++S + + ++ + ++ +L I TFY F P G + V+V Sbjct: 34 EQAVLPLLHYYMEKKNYISESDVSKISQLTGLSVSDILGIGTFYQHFVFHPTG-KNSVRV 92 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C TTPC+ RG +K E + DG + +C G C AP I D Y Sbjct: 93 CLTTPCLFRGGKKTFETLSKTLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 152 Query: 159 DLTPERLEEIIDAFSTGQ 176 +PE + I++ + G+ Sbjct: 153 GTSPEEIPSILEEYRKGK 170 >gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36] Length = 570 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 20/209 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 E++ V +++ P R +I L Q++ G +S A + +A + M+ Sbjct: 31 KGRQLQEDAWDEVRALLADKP--RRADVLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMA 88 Query: 74 RVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 V E+ATFY F + G +++C + C L G + L + + Sbjct: 89 EVYEVATFYAHFDVVKEGEAPPPALTIRICDSLSCELAGAQALKTALEDGLDASE----- 143 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP + IG + + T E+++++I A G T P + Sbjct: 144 ---VRVVRAPCMGRCDTAPALEIGHNFVDHATLEKVKQVIAA-----GYTHVHVPDYEAF 195 Query: 190 SSAPAGGLT-SLLDNNSKKRGKKKKDDKI 217 + AGG +L + + + + Sbjct: 196 DAYVAGGGYEALKKLRRDGDWEDVQQNLL 224 >gi|253698813|ref|YP_003020002.1| NADH dehydrogenase subunit E [Geobacter sp. M21] gi|251773663|gb|ACT16244.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21] Length = 155 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 7/155 (4%) Query: 26 VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 ++E + + R A+ P ++ Q GW++ A+ A +L ++ ++V E+A Sbjct: 2 ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAAALLGLSPLQVEELA 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 TFY PVG + + VC + C C+ +IE + ++ + +DG + Sbjct: 62 TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C ++P + +G Y LTP ++EI++ Sbjct: 121 CMGRCGDSPAMSVGDTPYGHLTPHLVDEILEKERA 155 >gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040] Length = 562 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ + +++ P R + +I L Q++ G +S A I ++ + + Sbjct: 22 PKGRQLDDQAHTEILDLLGARP--RDRDLLIEFLHLVQDKFGHISAAHIRALSEEMRVGQ 79 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+A+FY F + G ++VC + C L G E+L + + ++ Sbjct: 80 AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLKKALEDGMNP------ 133 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + T ++E I + DT P + Sbjct: 134 --AQVRVLRAPCMGRCDTAPVLEIGHNHIDHATLAKVETAIAS-----DDTHAHIPDYET 186 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218 S A GG L D + ++ +S Sbjct: 187 YESYAAEGGYAVLQDLRESGDWEAVQEKVLS 217 >gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum magnetotacticum MS-1] Length = 257 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 3/161 (1%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P+ S ++ V V++R+ + ++ +L QE+ W+S + VA + Sbjct: 2 PNGNSNGSDTGAVVAAVLARHGSDGTR--LMQILREIQEETEWLSPDILTRVAEGAKLPR 59 Query: 73 IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +V +A FY F P+G+ + T + G L+ K+ KP + DG Sbjct: 60 GQVEGVAGFYHFFHTEPLGSYRVLWSDNITD-RMAGNADLMARMCKKLWLKPGKVSEDGL 118 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 +S + C G C P +++ +T ER+++I+D Sbjct: 119 VSVDTTSCTGLCDQGPALLVNYRPVTRMTAERVDQIVDLIR 159 >gi|90579192|ref|ZP_01235002.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14] gi|90440025|gb|EAS65206.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14] Length = 188 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ + E I+ YP R + I L Q++ G++++ ++ +V+ + D++ ++ E Sbjct: 2 LTDQERAHLEEHIAHYPEKRAGA--IYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT + PVG R ++VC + C RG +K++E N + +DG+++ Sbjct: 60 LITFYTLLRRRPVG-RNVMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 C G C AP +I D +LTPER+ I+ + + Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158 >gi|89073314|ref|ZP_01159844.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp. SKA34] gi|89051024|gb|EAR56488.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp. SKA34] Length = 188 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +++ + E I+ YP R + I L Q++ G++++ ++ +V+ + D++ ++ E Sbjct: 2 LTDQERAHLEEHIAHYPEKRAGA--IYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + TFYT + PVG R ++VC + C RG +K++E N + +DG+++ Sbjct: 60 LITFYTLLRRRPVG-RNIMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 C G C AP +I D +LTPER+ I+ + + Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158 >gi|323526973|ref|YP_004229126.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1001] gi|323383975|gb|ADX56066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1001] Length = 161 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+++R+ ++ +++ +L Q++ G+V AA+ +A +++++ V + T+Y F+ Sbjct: 10 EELVARH--AQPGRSLVAVLHAIQDELGYVPPAAVAPLARVMNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P VQ+C C G E L + + + + G + E V C G C Sbjct: 68 TQPAAA-VTVQLCRAEACRSMGTEALAQHIESHTGCRFDAAHEAGAAVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152 >gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP 101886] Length = 609 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ +++RY R + ++ +L+ QE EG++S +++ V+A+ L+++ + V E +FY Sbjct: 5 VDAIMARYLHRRER--LLDMLIALQETEGYISDSSVNVLASGLNLSPLDVRETISFYHFL 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + + + T ++G E++ I +G + +C G Sbjct: 63 HDQPAG-KHTIYLADTVIARMKGYEEVKAALEEAIGCAFGEVTENGEFGLYDTQCIGLSD 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P +++ + LTP++++ ++ A G P Sbjct: 122 QEPAMLVDGIPFTHLTPDKVQTLVVALKAGVSPQALANP 160 >gi|237755576|ref|ZP_04584193.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium yellowstonense SS-5] gi|237692275|gb|EEP61266.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium yellowstonense SS-5] Length = 160 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + E + + +I L + ++ + ++N L++ ++ Sbjct: 6 LTPEIINKIEEYKKEFLT--KEQVIIQALHLIYSKYRDITLDHMLELSNYLEVPLSQIEG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 I +FY F++ R H++VC PC + GC+KLIE+ ++ + +G E Sbjct: 64 IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLIELFEKLTGEERNQESKNGRFYIET 122 Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172 VEC GAC AP MI D Y+ +T E+L EI+ + Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159 >gi|144897649|emb|CAM74513.1| NADH dehydrogenase I chain E [Magnetospirillum gryphiswaldense MSR-1] Length = 152 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +A +I + R A++P+L QE+ G+V +AA+ ++A L+++ + + +F Sbjct: 7 NAERARAIIESHRALR--GALLPMLHALQEEFGYVDQAAVPLLAAALNLSQAEIHGVISF 64 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y +F+ S G R V+VC C RG + L+E + K+ SDG + E V C Sbjct: 65 YHEFRQSRSG-RHVVKVCVAEACQARGSDTLVEHLKAKLGLDLGQTGSDGAFTLEAVYCL 123 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170 G C P ++ L+P RL+ + Sbjct: 124 GNCALGPSALVDDRLLGRLSPARLDGALA 152 >gi|307730639|ref|YP_003907863.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia sp. CCGE1003] gi|307585174|gb|ADN58572.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. CCGE1003] Length = 161 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+++R+ ++ +++ +L Q++ G+V + +A +++++ V + T+Y F+ Sbjct: 10 EELVARH--AQPGRSLLAVLHAIQDELGYVPPDTVAPLARVMNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P VQ+C C G E L + + + G + E V C G C Sbjct: 68 TQPAAP-VTVQLCRAEACRSMGTEALARHIESHTGCRFDAEHEAGAAVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152 >gi|209519329|ref|ZP_03268128.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. H160] gi|209500213|gb|EEA00270.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. H160] Length = 161 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++++ R+ ++ +++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ Sbjct: 10 DQLVQRH--AQPGRSLMTILHAIQDELGYVPPAAVGPLAGALNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 +P VQ+C C G E L + + + DG + E V C G C Sbjct: 68 TTPAAP-VTVQLCRAEACRSMGTEALAQHIETHTGCRFDAGHEDGAKVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + ++P++ + + A Sbjct: 127 LSPAMMLNGTLHARVSPQKFDALFAA 152 >gi|167586516|ref|ZP_02378904.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ubonensis Bu] Length = 158 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + +++R+ + +++ +L Q++ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVARH--AHGGRSLVAVLHAIQDEAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P R +Q+C C GCE L + + ++ G ++ E V C G C Sbjct: 67 TEPP-ARVTIQMCRAEACRSMGCEALAAHAQARTGCTFDASHA-GAVALESVYCLGLCAQ 124 Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171 +P + + + +TPE+ + ++ Sbjct: 125 SPSMTVNGVLHARVTPEKFDALLAD 149 >gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 567 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 20/207 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +S+E+ V V+ P R + +I L Q+ G +S + +A + + Sbjct: 27 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDVYGHLSADHLAALAFEMKLGQ 84 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G ++VC + C L G E+L + Sbjct: 85 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCALAGAEQLRAALEEGL-------- 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-D 187 G + C G C AP++ +G + + TPE++ I A GDT P Sbjct: 137 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA-----GDTHAHLPDYEG 191 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKD 214 + A AGG L + + +D Sbjct: 192 FDAYAAAGGYAVLKGLRAGGDWEAVQD 218 >gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035] Length = 568 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 20/203 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + V ++ P R + +I L R Q++ G +S A + +A L ++ Sbjct: 25 KGRQLEDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDKFGHLSAAHLRALAEELRLSQA 82 Query: 74 RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 V E+A+FY F + G ++VC + C L G + L Sbjct: 83 EVYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQALKSALE--------QGTD 134 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP+V +G + TPE + + A GDT P + + Sbjct: 135 PMQVRILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPAYEAL 189 Query: 190 SSAP-AGGLTSLLDNNSKKRGKK 211 + AGG +L D + + Sbjct: 190 DAYRTAGGYATLADLRATRNADA 212 >gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum] Length = 137 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R +E F F+ E+ + S YP +AVIPLL AQ Q GW+ A Sbjct: 38 LFVHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLDLAQRQHGWLPLTA 97 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101 + VA+ L M +RV E+ATFYT F PVG R HVQVC T Sbjct: 98 MHYVADYLGMPRMRVYEVATFYTMFMRQPVG-RYHVQVCTT 137 >gi|254431436|ref|ZP_05045139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium sp. PCC 7001] gi|197625889|gb|EDY38448.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium sp. PCC 7001] Length = 178 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 P+ ++ +I + A+I +L + QE G++ A+E VA L + Sbjct: 4 PPTLAELPPQAVERTTRLIRQ--QRGRADALIEVLHQVQELYGYLPPGALEQVARELKLP 61 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 RV +A+FY F+L VC T C ++G +L ++ + +G Sbjct: 62 LARVHGVASFYHLFRLEAPTA-HRCAVCLGTACFVKGGGELAARLEQRLGLQLDDPAGNG 120 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDL---TPERLEEIIDAF 172 + E V C GAC AP++++ L P L+ + A Sbjct: 121 NWALEHVSCLGACGQAPVLVVDGQMEPRLPMDDPAALDGRLAAL 164 >gi|330815878|ref|YP_004359583.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3] gi|327368271|gb|AEA59627.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3] Length = 156 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++SR+ +R +++ +L Q++ G+V + ++A L+++ V + T+Y F Sbjct: 8 ADALVSRH--ARADQSLVAILHAIQDEAGYVPEGCVPLLAKTLNLSRAEVHGVLTYYHHF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +P R +Q+C C G E L+E + + + + G + E V C G C Sbjct: 66 RTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDQ-GAQGDVELESVYCLGFCA 123 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P MI + + +T R + ++ A Sbjct: 124 QSPSAMINGEPHARMTAARFDALLTA 149 >gi|170693703|ref|ZP_02884861.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia graminis C4D1M] gi|170141485|gb|EDT09655.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia graminis C4D1M] Length = 161 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 E+++R+ ++ +++ +L Q++ G+V AA+ +A ++++ V + T+Y F+ Sbjct: 10 EELVARH--AQPGRSLLAVLHAIQDELGYVPPAAVPPLARTMNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P VQ+C C G E L + + + + G + E V C G C Sbjct: 68 TQPAAP-VTVQLCRAEACRSMGTEALAQHIESHTGCRFDAEHKAGAAVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPAMMVNGTLHAKITPQKFDAIFAA 152 >gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus] Length = 124 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 52/91 (57%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 V R E + F F+ E+ V +I+ YP Q+A IP+L AQ Q GW+ +A+ Sbjct: 34 FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 VA ILD++ +RV E+ATFYT F PVG Sbjct: 94 NKVAEILDVSPMRVHEVATFYTMFNRQPVGK 124 >gi|295677292|ref|YP_003605816.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1002] gi|295437135|gb|ADG16305.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp. CCGE1002] Length = 161 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++++ R+ ++ ++ +L Q++ G+V AA+ +A +L+++ V + T+Y F+ Sbjct: 10 DQLVQRH--AQPGRTLMTVLHAIQDEIGFVPPAAVGPLARVLNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 +P VQ+C C G E L + + + DG T+ E V C G C Sbjct: 68 TTPAAP-VTVQLCRAEACRSMGTEALAQHIEAHTGCRFDAGHHDGATVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + ++ A Sbjct: 127 LSPAMMLNGTLHARVTPQKFDALLAA 152 >gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 102/208 (49%), Gaps = 10/208 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + A ++ +++RYP + ++P+++ +++G++S ++ +AN + M +V Sbjct: 74 TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMYAPQVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134 + + Y F + HV +C CM++G +K+++ + K + H + +G + Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + + G CVN P ++I G D E LT + I ++ ++ +G T + Sbjct: 191 FHAMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDSIEESLNSLKGKTYKWAKNNIVEQ 250 Query: 191 SAPAGG-LTSLLDNNSKKRGKKKKDDKI 217 S A G SL++N+ + KK ++ Sbjct: 251 SLKAKGKEYSLIENHISVKDAIKKAVQM 278 >gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis SKA53] Length = 561 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 20/210 (9%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73 + + + ++ P R + +I L Q+ G +S A + +A + ++ Sbjct: 22 KGRQLDDGAMAEILALLGDRP--RRRDLLIEFLHLVQDANGHLSAAHLRALAEEMRLSQA 79 Query: 74 RVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 V E+ATFY F + ++VC + C L G + L + P Sbjct: 80 EVYEVATFYAHFDVVKESETPPPALTIRVCDSLSCELAGAQALKAALED--GLDPAQ--- 134 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP++ IG + + TP +++ I A DT P + Sbjct: 135 ---VRVLRAPCMGRCDTAPVLEIGHNHIDHATPAKVQAAIVA-----DDTHAHLPDYQTL 186 Query: 190 SSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218 +S GG L ++ + +D ++ Sbjct: 187 ASYCADGGYAVLEHLRAQGDWQAVQDKVLA 216 >gi|302037259|ref|YP_003797581.1| formate dehydrogenase subunit gamma [Candidatus Nitrospira defluvii] gi|300605323|emb|CBK41656.1| Formate dehydrogenase, gamma subunit [Candidatus Nitrospira defluvii] Length = 149 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 3/150 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V ++++ S ++ L+ QEQ G V A+ +A+ L + +V + ++Y Sbjct: 3 EQVKSILAK--VRSEPSNILKALLALQEQLGHVPTEAVPDIAHALGVTTAQVAGVLSYYP 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 +L+ G R ++VC C GC +L+ ++++ + G + + + C G Sbjct: 61 DLRLTAPG-RHLIRVCMGESCYANGCGRLLRELQDRLRVDVGETAAGGKFTLDTMSCAGN 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C +P VMI +D + L P +L+ +++ + Sbjct: 120 CAVSPTVMIDRDLHGRLLPSQLDTLLERYK 149 >gi|296159982|ref|ZP_06842802.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. Ch1-1] gi|295889728|gb|EFG69526.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia sp. Ch1-1] Length = 161 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++++ R+ ++ +++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ Sbjct: 10 DQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P + VQ+C C G E L + + G T+ E V C G C Sbjct: 68 TQPA-AQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHEHGATVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPALMLNGTLHARVTPQKFDAIFAA 152 >gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 637 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 100/208 (48%), Gaps = 10/208 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + A ++ +++RYP + ++P+++ +++G++S ++ +AN + M V Sbjct: 74 TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMHAPHVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134 + + Y F + HV +C CM++G +K+++ + K + H + +G + Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RI 189 + + G CVN P ++I G D E LT + I ++ ++ +G T + Sbjct: 191 FHGMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDNIEESLNSLKGKTYKWAKNNIVEQ 250 Query: 190 SSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 S G SLL+N+ + KK ++ Sbjct: 251 SLKSKGKEYSLLENHISVKDAIKKAVQM 278 >gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit [Thalassiobium sp. R2A62] Length = 561 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V ++ P R +I L Q G +S A + +A + M+ Sbjct: 21 PKGRALLDGPWEEVRTLLGDRP--RRSDLLIEFLHLIQGAYGHLSAAHLRALAEEMRMSM 78 Query: 73 IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V EIATFY F + ++VC + C L G ++L + + Sbjct: 79 AEVYEIATFYAHFDVVKEDEAPPPALTIRVCDSLSCELAGAQQLKAALEDGLDASE---- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G ++ T E++E I A GDT P + Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHAHIDNATVEKVEAAIAA-----GDTHAHIPDYET 185 Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218 + GG +L D + + +D ++ Sbjct: 186 FDAYVAEGGYAALKDLRADGNWEDVQDKILA 216 >gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Magnetospirillum magneticum AMB-1] Length = 627 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ V++R+ + ++ +L QE+ W+S + VA + +V +A FY F Sbjct: 23 VSAVLARHGADGTR--LMQILREIQEETEWLSPDILTRVAEGTRLPRGQVEGVAGFYHFF 80 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P+G + T + G L+ K+ KP + DG +S + C G C Sbjct: 81 HTEPLGRYRVLWSDNITD-RMAGNADLMARMCKKLWLKPGRVSEDGLVSVDTTSCTGLCD 139 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173 P +++ +T +R+++I++ Sbjct: 140 QGPALLVNYRPITRMTAQRVDQIVELIR 167 >gi|225621402|ref|YP_002722661.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira hyodysenteriae WA1] gi|225216223|gb|ACN84957.1| DH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira hyodysenteriae WA1] Length = 168 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E+ A + ++S++ + + +I + Q+ G+V R + V+ ++ R+ EI Sbjct: 11 EDIADEIKSLVSKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEETNIPLARIYEIL 68 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEV 138 TFY F L P ++ VC T C L+G +L+E + K++ K + ++D EEV Sbjct: 69 TFYNYFTLEPPAE-NNIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKLEEV 127 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C AP++ ++ + + + + I Sbjct: 128 RCIGCCGLAPVITFNEEVSGRVVIDDIAKFIK 159 >gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus 238] Length = 571 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 20/206 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +++ V ++ P R +I L Q++ G +S A I + + ++ Sbjct: 21 PKGRQLQDDAWDDVRSLLGSSPCQR--DLLIEYLHLIQDKFGHLSAAHIRALGEEMRISM 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + E+ATFY F + G ++VC + C L G ++L + K Sbjct: 79 AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKVALEGGLDAKN---- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ IG + + TPE++ I A DT + Sbjct: 135 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVLAAIAA-----QDTHAHVQDYEG 185 Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKK 213 + A GG +L D + + Sbjct: 186 FDAYAADGGYATLKDLRKNGNWEDVQ 211 >gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 608 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R ++ +L AQE G++ AA+ ++A + + RV +A FY+ L+PVG Sbjct: 18 RRDPGELVQILREAQEALGYLPAAALTLIARAVGVPRARVEGVAGFYSFLHLAPVGRYRV 77 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + T ML G L++ NK+ + + DG +S + C G C P +++ Sbjct: 78 LFSDNITDRML-GSGDLLDRLCNKLWIERGKLSEDGLVSVDTTSCTGMCDQGPALLVNGR 136 Query: 156 TYEDLTPERLEEIIDAFST 174 ++ ER++ + + Sbjct: 137 AMTRMSAERIDRLCELIRA 155 >gi|187924995|ref|YP_001896637.1| NAD-dependent formate dehydrogenase, subunit gamma [Burkholderia phytofirmans PsJN] gi|187716189|gb|ACD17413.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia phytofirmans PsJN] Length = 161 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++++ R+ ++ +++ +L Q++ G+V AA+ +A ++++ V + T+Y F+ Sbjct: 10 DQLVERH--AQPGVSLLAVLHAIQDEVGYVPPAAVAPLARAMNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P VQ+C C G E L + + + G T+ E V C G C Sbjct: 68 TQPPAP-VTVQLCRAEACRSMGTEALAQHIEAHTGCRFDGEHQHGATVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPALMLNGTLHARVTPQKFDAIFAA 152 >gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3] Length = 560 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 20/207 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +S+E+ V V+ P R + +I L Q+ G +S + +A + + Sbjct: 20 PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDACGHLSADHLAALAFEMKLGQ 77 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G ++VC + C L G E+L + Sbjct: 78 AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLRAALEEGL-------- 129 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 G + C G C AP++ +G + + TPE++ I A GDT P + Sbjct: 130 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA-----GDTHAHLPAYET 184 Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKKD 214 A AGG L + + +D Sbjct: 185 FDAYAAAGGYAVLKGLRAGGDWEAVQD 211 >gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus] Length = 604 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++ R R + +I +L Q G + + +A+ L+++ + +LE A+FY F Sbjct: 5 IKAILERNGSERTR--LIDILWDVQHLYGHIPDEVLPQLADELNLSPLDILETASFYHFF 62 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + + + T + G + + + + + + G E C G Sbjct: 63 HRKPSG-KYRIYLSDTVIAKMNGYQAVHDSLERETGARFGGTDKTGMFGLFETPCIGLSD 121 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P ++I + L P + +II G+ P Sbjct: 122 QEPAMLIDNVVFTRLRPGTIVDIITQLRQGRSPEDIANP 160 >gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 319 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 94/207 (45%), Gaps = 9/207 (4%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 +++ + + ++ ++++YP ++P+++ +Q+G++S ++ +A + +V Sbjct: 74 TYNADESAGLDSILAKYPD--HPQYLLPIVIEETDQKGYISDPSLVKIAKHVHPYPPQVE 131 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134 I + Y F + HV +C CM++G K+++ + + LH + DG + Sbjct: 132 SILSHYHFFPRK-YTSDTHVYLCRCHNCMMKGQSKVMQALKERYGVDNLHSSVSRDGKFT 190 Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 + + G CVN P +M+ G D E LT + + + +G+ + Sbjct: 191 FHTMNWLGYCVNDGPAMMVKRRGGDYVEVLTGLTGDGVEQSLKGLKGNVFKWAKNKIVEQ 250 Query: 191 SAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + A G SL++NN + K K+ Sbjct: 251 TLKAEGRYSLIENNVAVKDAVSKAVKM 277 >gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp. WH 5701] gi|87282303|gb|EAQ74263.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp. WH 5701] Length = 168 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E S + ++ R A+I +L AQ+ ++S + VA L + RV A Sbjct: 17 EASFAALEPLLLR--SQGRADALIEVLHGAQKLYSYLSDDLLRHVATRLQLPLSRVKGTA 74 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 +FY F+ P R VC T C ++G LI + K R DG S EV Sbjct: 75 SFYHLFRFQPP-ARHRCVVCTGTACQIQGAPALIAAMEEGLGLKLGARRGDGWASLSEVR 133 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C G C +AP+V+I TP L + Sbjct: 134 CLGTCSDAPLVLIDGTVGRQQTPAGLRRWLKEL 166 >gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Sideroxydans lithotrophicus ES-1] Length = 603 Score = 147 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 + F W+++++ R+ R + ++ +L QE G + + A+ V+A L + Sbjct: 3 PDNDIRFDVSDLSWLDKLVMRH--GRDATRLLQILREIQESFGHIPQQAVSVLAAKLSIP 60 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 R+ +A+FY+ L P G + T ML G + L++ + +P + DG Sbjct: 61 RSRIESVASFYSFLHLKPHGEYRVLFSDNITDRML-GSQDLMDQMCQLLWLQPGKVSEDG 119 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 +S C G C P +++ +T +R++EI Sbjct: 120 LVSIGTTSCTGMCDQGPALLVNGRAITRMTHQRVQEI 156 >gi|254252941|ref|ZP_04946259.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia dolosa AUO158] gi|124895550|gb|EAY69430.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia dolosa AUO158] Length = 166 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 10/152 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q++ G+V + + +A L+++ V + T+Y F+ Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDEAGYVPQGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVE 139 +P R +Q+C C GCE L + + + D ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAGHGDAASAHARADVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + + +TPE+ + ++ Sbjct: 126 CLGLCAQSPSMTVNGALHAKVTPEKFDALLAD 157 >gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 572 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + ++ P R + +I L Q+ G +S + +A+ + +A+ Sbjct: 26 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 83 Query: 73 IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G A V+VC + C + G E L+ + +I Sbjct: 84 AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187 G + C G C +AP +G + TPER++ + A GDT P +D Sbjct: 137 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKAAVAA-----GDTHPHIPDYVD 189 Query: 188 RISSAPAGGLTSL 200 + AGG +L Sbjct: 190 YDAYRAAGGYRTL 202 >gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium nodulans ORS 2060] Length = 567 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + ++ P R + +I L Q+ G +S + +A+ + +A+ Sbjct: 21 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 78 Query: 73 IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G A V+VC + C + G E L+ + +I Sbjct: 79 AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 131 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187 G + C G C +AP +G + TPER++ + A GDT P +D Sbjct: 132 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKAAVAA-----GDTHPHIPDYVD 184 Query: 188 RISSAPAGGLTSL 200 + AGG +L Sbjct: 185 YDAYRAAGGYRTL 197 >gi|91784826|ref|YP_560032.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia xenovorans LB400] gi|91688780|gb|ABE31980.1| formate dehydrogenase gamma subunit [Burkholderia xenovorans LB400] Length = 161 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++++ R+ ++ +++ +L Q++ G+V AA+ +A L+++ V + T+Y F+ Sbjct: 10 DQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFR 67 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145 P + VQ+C C G E L + + G T+ E V C G C Sbjct: 68 TQPA-AQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHQHGATVELESVYCLGQCA 126 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171 +P +M+ + +TP++ + I A Sbjct: 127 LSPALMLNGTLHARITPQKFDAIFAA 152 >gi|167563644|ref|ZP_02356560.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis EO147] Length = 157 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDEAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 138 Query: 161 TPERLEEIIDA 171 T ER + ++DA Sbjct: 139 TAERFDALLDA 149 >gi|221632799|ref|YP_002522021.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159] gi|221155661|gb|ACM04788.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159] Length = 182 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 7/155 (4%) Query: 26 VNEVIS-RYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + ++ RY P Q A V+ AQ GWV A +++A L + RV + TF Sbjct: 17 LRRILEERYRPRDHQEAQELVVGACQEAQHLYGWVPPQAAQLIAEHLGVTINRVYGLLTF 76 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-C 140 Y F+ P G + +C C + G +K+++ R + SDG L+ + C Sbjct: 77 YADFRTEPPGEHF-LWLCHGAACYIAGSQKVVDALRTEYRLGEDGTTSDGLLTVHVFDGC 135 Query: 141 QGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174 GAC AP+ + + L RL E+++ Sbjct: 136 LGACDLAPVAQLDHHEYIGQLDANRLRELVEELRA 170 >gi|186475494|ref|YP_001856964.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia phymatum STM815] gi|184191953|gb|ACC69918.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia phymatum STM815] Length = 170 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 13/160 (8%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 +A+ +E++ R+ + +++ LL Q+ G+V + +A ++++ V + T+ Sbjct: 5 NALAPDELVRRH--VQPGMSLVALLHAIQDDVGFVPPDTVAPLARTMNLSRAEVHGVITY 62 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ---------KPLHRNS-DG 131 Y F+ SP VQ+C C G E L + + H ++ DG Sbjct: 63 YHHFRQSPAAP-VTVQLCRAEACRSMGTEALAQHIEARTGCRFDAHKHGAHDGHDHACDG 121 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + E V C G C +P +MI + + +TP++ + ++ A Sbjct: 122 AVGLESVYCLGQCALSPAMMINGELHARVTPQKFDALLAA 161 >gi|325523855|gb|EGD02082.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia sp. TJI49] Length = 162 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 6/148 (4%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVERH--ARPGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGTLSWEEVECQGA 143 P R +Q+C C GCE L E + + + ++ E V C G Sbjct: 67 TVPP-ARVTIQMCRAEACRSMGCEALAEHAEARTGCRFDAAHDASDPQAVALESVYCLGL 125 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C +P + + + +TP++ + ++ Sbjct: 126 CAQSPSMTVNGVLHAKVTPQKFDALLAD 153 >gi|332527762|ref|ZP_08403801.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus JA2] gi|332112158|gb|EGJ12134.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus JA2] Length = 136 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + V I+R+ + ++P+L Q G++ R A+ +A L+++ V + ++ Sbjct: 2 TQDIVASTIARH--QGREGPLLPILHELQHTLGYIPREALPRIAQALNLSRAEVHGVVSY 59 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Y F+ +QVC C G ++L + + + E V C Sbjct: 60 YHHFRTEKPTA-PVLQVCRAESCQAMGADRLWDHAQAHGGCQ-----------VEAVYCL 107 Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169 G C ++P M+G++ LTPE+L+E++ Sbjct: 108 GLCASSPAAMLGEEPLGRLTPEKLDEVL 135 >gi|167570806|ref|ZP_02363680.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis C6786] Length = 154 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 18 SLVAILHAIQDEAGYVPSACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 76 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 77 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 135 Query: 161 TPERLEEIIDA 171 T ER + ++DA Sbjct: 136 TAERFDALLDA 146 >gi|83721159|ref|YP_442162.1| formate dehydrogenase subunit gamma [Burkholderia thailandensis E264] gi|257138351|ref|ZP_05586613.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis E264] gi|83654984|gb|ABC39047.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis E264] Length = 157 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 139 SPERFDALFDA 149 >gi|118475092|ref|YP_891365.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter fetus subsp. fetus 82-40] gi|118414318|gb|ABK82738.1| hydrogenosomal NADH dehydrogenase 24 kda subunit [Campylobacter fetus subsp. fetus 82-40] Length = 163 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F F+ E +NE+ + R + V+P L Q +G++ + + L + + Sbjct: 2 KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGFIDAKDVLYLEKTLGIRSMF 59 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 E FY+ F G + ++ C T C LRG ++LI+ ++ + K +SDG S Sbjct: 60 YAEAIGFYSMFNQKSKG-KFELKFCKTITCKLRGSDELIKFTQDILGIKMGETSSDGLFS 118 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 E EC G C AP ++ + + L + +I+ + Sbjct: 119 LGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKENASS 163 >gi|134295065|ref|YP_001118800.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia vietnamiensis G4] gi|134138222|gb|ABO53965.1| formate dehydrogenase gamma subunit [Burkholderia vietnamiensis G4] Length = 166 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139 +P R +Q+C C GCE L E + + + + D ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCEALAEHAQARTGCRFDAAHGDAADPHAPPDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P + I + +TPE+ + ++ + Sbjct: 126 CLGLCAQSPSMTINGVLHAKVTPEKFDALLAQAAA 160 >gi|167581038|ref|ZP_02373912.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis TXDOH] Length = 157 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 139 SPERFDALFDA 149 >gi|126640813|ref|YP_001083797.1| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978] Length = 112 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A +L ++ + +ATFY + PVG R + +C + C L G E L E + ++ Sbjct: 1 MNAIAQLLTISVADLEGVATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQREL 59 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + DG + + C G C P +MI +DT+ + ++++++ + Sbjct: 60 GIQFGQTTQDGRFTLLPICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 111 >gi|167619116|ref|ZP_02387747.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis Bt4] Length = 151 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A IE +A L+++ V + T+Y F+ +P R +++C Sbjct: 15 SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 73 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + G ++ E V C G C +P + I + + + Sbjct: 74 AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 132 Query: 161 TPERLEEIIDA 171 +PER + + DA Sbjct: 133 SPERFDALFDA 143 >gi|206561320|ref|YP_002232085.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia cenocepacia J2315] gi|198037362|emb|CAR53295.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia J2315] Length = 166 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 10/152 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVGRH--ARAGRSLVAILHAIQNDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139 +P R +Q+C C GCE L + + + D ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPHAPDDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + + +TPE+ + ++ Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157 >gi|53720138|ref|YP_109124.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia pseudomallei K96243] gi|254295607|ref|ZP_04963065.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 406e] gi|52210552|emb|CAH36535.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei K96243] gi|157805546|gb|EDO82716.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 406e] Length = 171 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 35 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 93 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + D ++ E V C G C +P + I + + + Sbjct: 94 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 152 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 153 SPARFDALFDA 163 >gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath] gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath] Length = 561 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 23/209 (11%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RRL + + +P + ++ P R +I L + Q+ G VS I Sbjct: 14 RRLGKPKGRPV----DAHVLEEIQRLLGAEP--RRADLLIEHLHKIQDHYGHVSARHIAA 67 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +A + ++ V E+ATFY F + G V+VC + C + G L+ ++ Sbjct: 68 LAFEMKLSQAEVYEVATFYHHFDVVAEGESPPPPLTVRVCESLSCAMAGAHALMPALKDA 127 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + + + + V C G C +AP+ ++G++ + TP + ++ T Sbjct: 128 LGEG---------VRIQPVPCVGRCQHAPVAVVGQNPVDRATPAAVSAAVEQGQTL---- 174 Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 P + GG D S R Sbjct: 175 PAPAAYRSYAAYQADGGYQLYQDCRSGHR 203 >gi|254181074|ref|ZP_04887672.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1655] gi|184211613|gb|EDU08656.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1655] Length = 157 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 + ++ +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P Sbjct: 13 HAHAQPGRSLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-A 71 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 +++C C G E L+ + + + + D ++ E V C G C +P + I Sbjct: 72 HVTIRLCRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTI 130 Query: 153 GKDTYEDLTPERLEEIIDA 171 + + ++P R + + DA Sbjct: 131 NDEPHAKMSPARFDALFDA 149 >gi|170732344|ref|YP_001764291.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia MC0-3] gi|254246010|ref|ZP_04939331.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia PC184] gi|124870786|gb|EAY62502.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia cenocepacia PC184] gi|169815586|gb|ACA90169.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia MC0-3] Length = 166 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 12/153 (7%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DVLVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--------RNSDGTLSWEEV 138 +P R +Q+C C GCE L + + R D ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPD-DVALESV 124 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + + +TPE+ + ++ Sbjct: 125 YCLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157 >gi|167895369|ref|ZP_02482771.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 7894] gi|167919994|ref|ZP_02507085.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei BCC215] Length = 157 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + D ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 139 SPARFDALFDA 149 >gi|78065618|ref|YP_368387.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia sp. 383] gi|77966363|gb|ABB07743.1| formate dehydrogenase gamma subunit [Burkholderia sp. 383] Length = 166 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 10/155 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DALVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLARALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L + + ++ G ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAAHGDAADAHAPGDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P + + + +TPE+ + ++ + Sbjct: 126 CLGLCAQSPSLTVNGVLHARVTPEKFDALLAEAAA 160 >gi|167903756|ref|ZP_02490961.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei NCTC 13177] Length = 146 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 10 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 68 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + D ++ E V C G C +P + I + + + Sbjct: 69 AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 127 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 128 SPARFDALFDA 138 >gi|126454394|ref|YP_001067206.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 1106a] gi|167720686|ref|ZP_02403922.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei DM98] gi|167846782|ref|ZP_02472290.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei B7210] gi|237813330|ref|YP_002897781.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei MSHR346] gi|242316557|ref|ZP_04815573.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106b] gi|254195622|ref|ZP_04902049.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei S13] gi|126228036|gb|ABN91576.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106a] gi|169652368|gb|EDS85061.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei S13] gi|237504647|gb|ACQ96965.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei MSHR346] gi|242139796|gb|EES26198.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1106b] Length = 157 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + D ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 139 SPARFDALFDA 149 >gi|53724802|ref|YP_102257.1| formate dehydrogenase subunit gamma [Burkholderia mallei ATCC 23344] gi|67642931|ref|ZP_00441682.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei GB8 horse 4] gi|76809699|ref|YP_334388.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 1710b] gi|121599593|ref|YP_993893.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1] gi|124386153|ref|YP_001026954.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC 10229] gi|126441142|ref|YP_001059918.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 668] gi|126449103|ref|YP_001079758.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC 10247] gi|134277771|ref|ZP_01764486.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 305] gi|166999709|ref|ZP_02265543.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei PRL-20] gi|167739671|ref|ZP_02412445.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 14] gi|167830054|ref|ZP_02461525.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 9] gi|167912019|ref|ZP_02499110.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 112] gi|217420553|ref|ZP_03452058.1| formate dehydrogenase family protein [Burkholderia pseudomallei 576] gi|226197898|ref|ZP_03793472.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei Pakistan 9] gi|254177027|ref|ZP_04883684.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 10399] gi|254192273|ref|ZP_04898762.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei Pasteur 52237] gi|254203942|ref|ZP_04910302.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH] gi|254208922|ref|ZP_04915270.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU] gi|254262013|ref|ZP_04953067.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1710a] gi|254360023|ref|ZP_04976293.1| formate dehydrogenase, gamma subunit [Burkholderia mallei 2002721280] gi|52428225|gb|AAU48818.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 23344] gi|76579152|gb|ABA48627.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 1710b] gi|121228403|gb|ABM50921.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1] gi|124294173|gb|ABN03442.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei NCTC 10229] gi|126220635|gb|ABN84141.1| formate dehydrogenase family protein [Burkholderia pseudomallei 668] gi|126241973|gb|ABO05066.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei NCTC 10247] gi|134251421|gb|EBA51500.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei 305] gi|147745454|gb|EDK52534.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH] gi|147750798|gb|EDK57867.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU] gi|148029263|gb|EDK87168.1| formate dehydrogenase, gamma subunit [Burkholderia mallei 2002721280] gi|157987468|gb|EDO95244.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei Pasteur 52237] gi|160698068|gb|EDP88038.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC 10399] gi|217395965|gb|EEC35982.1| formate dehydrogenase family protein [Burkholderia pseudomallei 576] gi|225930086|gb|EEH26099.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei Pakistan 9] gi|238524151|gb|EEP87586.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei GB8 horse 4] gi|243064207|gb|EES46393.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia mallei PRL-20] gi|254220702|gb|EET10086.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia pseudomallei 1710a] Length = 157 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C G E L+ + + + + D ++ E V C G C +P + I + + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138 Query: 161 TPERLEEIIDA 171 +P R + + DA Sbjct: 139 SPARFDALFDA 149 >gi|107022111|ref|YP_620438.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia cenocepacia AU 1054] gi|116689056|ref|YP_834679.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia cenocepacia HI2424] gi|105892300|gb|ABF75465.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia AU 1054] gi|116647145|gb|ABK07786.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia HI2424] Length = 166 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A +L+++ V + T+Y F+ Sbjct: 9 DVLVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKVLNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--------RNSDGTLSWEEV 138 +P RA +Q+C C GCE L + + R D ++ E V Sbjct: 67 TAPP-ARATIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPD-DVALESV 124 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + + +TPE+ + ++ Sbjct: 125 YCLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157 >gi|218514552|ref|ZP_03511392.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli 8C-3] Length = 115 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + E +RYP R SA++P L AQ + G + +E VANIL + I V E+ATFY Sbjct: 4 REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 T F PVG H+Q+C CML E L+ + K D + Sbjct: 62 TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTL 113 >gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens] gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens AM1] Length = 572 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + E++ P R + +I L Q+ G +S + +A+ + +A+ Sbjct: 25 PKGRQVDPHAKVEIEELLGTRP--RQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G R ++VC + C + G ++L+E + ++ Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C +AP V +G + + ++A DT P Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG + L+ + G+ DD + Sbjct: 190 YDAYRAGGGYATLER--LRSGELPVDDVL 216 >gi|238026516|ref|YP_002910747.1| formate dehydrogenase subunit gamma [Burkholderia glumae BGR1] gi|237875710|gb|ACR28043.1| Formate dehydrogenase, gamma subunit [Burkholderia glumae BGR1] Length = 162 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 + ++SR+ R +++ +L Q++ G+V + +A L+++ V + T+Y F Sbjct: 8 ADALVSRH--VRAGRSLVAILHAIQDEAGYVPEGCVPPLAKALNLSRAEVHGVLTYYHHF 65 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH--QKPLHRNSDGTLSWEEVECQGA 143 + +P R +Q+C C G E L+E + + H +G ++ E V C G Sbjct: 66 RTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDAGH---NGDVALESVYCLGF 121 Query: 144 CVNAPMVMIGKDTYEDLTPERL 165 C +P MI + + L+P R Sbjct: 122 CAQSPSAMINGEPHARLSPARF 143 >gi|167837457|ref|ZP_02464340.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia thailandensis MSMB43] Length = 157 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P R +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIH--QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C G E L+ + + H G ++ E V C G C +P + I + + Sbjct: 80 AEACRSMGGEALVAHAQARAGCRIDGGH---GGEVALESVYCLGLCAQSPSLTINDEPHA 136 Query: 159 DLTPERLEEIIDA 171 ++P R + + DA Sbjct: 137 KMSPARFDALFDA 149 >gi|161525534|ref|YP_001580546.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia multivorans ATCC 17616] gi|189349738|ref|YP_001945366.1| formate dehydrogenase subunit gamma [Burkholderia multivorans ATCC 17616] gi|221213581|ref|ZP_03586555.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD1] gi|160342963|gb|ABX16049.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia multivorans ATCC 17616] gi|189333760|dbj|BAG42830.1| formate dehydrogenase gamma subunit [Burkholderia multivorans ATCC 17616] gi|221166370|gb|EED98842.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD1] Length = 166 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 10/160 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 ++ R+ +R +++ +L Q++ G+V + +A L+++ V + T+Y F+ Sbjct: 9 EALVERH--ARAGRSLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L E + + + H ++ ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 C G C +P + + + +TPE+ + ++ G+ Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAVAHAGEA 165 >gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium chloromethanicum CM4] Length = 572 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + E++ SR + +I L Q+ G +S + +A+ + +A+ Sbjct: 25 PKGRQVDPHAKVEIEELLGT--RSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G R ++VC + C + G ++L+E + ++ Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C +AP V +G + + ++A DT P Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG + L+ + G+ DD + Sbjct: 190 YDAYRAGGGYATLER--LRSGELSVDDVL 216 >gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB] gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Dechloromonas aromatica RCB] Length = 632 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 4/167 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E A V+ V++RY R + ++ +L QE W+S AI+ + L + ++ +A Sbjct: 9 EAVAGVVDRVVARY--HRDPTCMVQILREVQEVCDWISPEAIDRMQVTLGVPRTKIEGVA 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FY F P G + T ML G + +++ N + + + DG +S + Sbjct: 67 GFYAFFYTEPRGKYRVLFSDNITDRML-GSKAMMDRLCNSLWVERGKVSEDGLVSVAQTA 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 C G C P ++I LT ER++EI G+ P Sbjct: 126 CTGMCDQGPALLINNYAIAGLTAERIDEI-AELIRGKVPLAEWPPAY 171 >gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium radiotolerans JCM 2831] Length = 572 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 23/210 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + E++ SR + +I L Q+ G +S + +A+ + +A+ Sbjct: 25 PKGRQVEPRAKVEIEELLGS--RSRQRDLLIEHLHLIQDTFGQISAEHLAALADEMALAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G R V+VC + C + G ++L+E + ++ Sbjct: 83 AEVFETATFYAHFDVVKEGDAAIPRLTVRVCDSITCAMFGADELLETLQRELASDA---- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187 + C G C +AP V +G + + ++A GDT P +D Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHKADLASVRAAVEA-----GDTHAHVPDYVD 189 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG +L + + G DD + Sbjct: 190 YDAYRAAGGYATL---DRLRSGDLPVDDIL 216 >gi|172059964|ref|YP_001807616.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MC40-6] gi|171992481|gb|ACB63400.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MC40-6] Length = 166 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L + + ++ G ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCESLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C +P + + + +TPE+ + ++ Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157 >gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium sp. 4-46] gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium sp. 4-46] Length = 572 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 24/210 (11%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + ++ P R + +I L Q+ G +S + +A+ + +A+ Sbjct: 26 PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAF 83 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G A V+VC + C + G E+L+ + +I Sbjct: 84 AEVFETATFYAHFDVVKEGEAAIPALTVRVCDSLTCAMHGAEELLAALQAEIG------- 136 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187 + C G C +AP +G + T E + + A GDT P ID Sbjct: 137 --AQVRVVRAPCVGLCDHAPAAEVGHNFLHRATVETVRAAVAA-----GDTHAHLPDTID 189 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG +L + G +D + Sbjct: 190 FDAYRDAGGYRTL---ERLRAGDLSVEDVL 216 >gi|188997421|ref|YP_001931672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188932488|gb|ACD67118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 160 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + E + + +I L + +S + ++N L++ ++ Sbjct: 6 LTPEIINKIEEYKKEFLT--KEQVIIQALHLIYSKSRDISLDHMLELSNYLEVPLNQIER 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 I +FY F++ R H++VC PC + GC+KLIE+ ++ + +G E Sbjct: 64 IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLIELFEKLTCEERNQESKNGRFYIET 122 Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172 VEC GAC AP MI D Y+ +T E+L EI+ + Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159 >gi|115350951|ref|YP_772790.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria AMMD] gi|115280939|gb|ABI86456.1| formate dehydrogenase gamma subunit [Burkholderia ambifaria AMMD] Length = 166 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139 +P R +Q+C C GCE L + + ++ G ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 C G C +P + + + +TPE+ + ++ +T Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAAT 160 >gi|87198756|ref|YP_496013.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium aromaticivorans DSM 12444] gi|87134437|gb|ABD25179.1| formate dehydrogenase gamma subunit [Novosphingobium aromaticivorans DSM 12444] Length = 137 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 14/151 (9%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 + ++I+ + + Q A++P+L Q G VS AI VA+ L+++ V + +FY Sbjct: 1 MERLEQIIASH--AGRQGALLPILHDVQAAFGHVSEDAIRAVASALNLSRADVFGVVSFY 58 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 F+ SP RA +++C C RG E L + H K E V C G Sbjct: 59 HDFRQSPE-PRAVLKLCRAEACQARGVEALAAQLPDNPHVK-----------IEAVYCLG 106 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C P M + L +L ++++ + Sbjct: 107 LCSVGPNAMAEGKVHARLDASKLGALVESLA 137 >gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein [Rhodoferax ferrireducens T118] gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Rhodoferax ferrireducens T118] Length = 603 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 4/151 (2%) Query: 25 WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + +++RYPP A++ +L Q +GW++ A+ VA+ L + +V +A FY Sbjct: 14 ELQRLLARYPPD--PHALLQILRELQALQGWLAPDALGQVASELGLTLAQVQGVAGFYRF 71 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 PVG V L G E L+ ++ P + DG +S E C G C Sbjct: 72 LHTRPVGA-YRVLFSDNVTDRLLGSEALLADLCQRLGVVPGQLSFDGLVSVERTSCTGLC 130 Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174 P ++I L P R+ + + Sbjct: 131 DQGPALLINHHQVLTRLDPARVAHMAELIRA 161 >gi|148554395|ref|YP_001261977.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas wittichii RW1] gi|148499585|gb|ABQ67839.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas wittichii RW1] Length = 159 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 3/146 (2%) Query: 18 FSEESAIWVNEVISRYPPSR--CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + E V +++R ++ + A++PLL QE+ G+V + VA ++++ V Sbjct: 1 MTMERREPVEAMVARLLAAQGERRGALLPLLHDLQEELGFVGEETVAAVAAAMNLSRAEV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + +FY F+ +P G R V+ C C RG + +++ +DG ++ Sbjct: 61 HGVVSFYHDFRKAPAG-RHVVKYCRAESCRSRGGVAIEAALADRLRVTMGETRADGQVTL 119 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLT 161 E V C G C P ++ + Sbjct: 120 EPVYCLGLCAIGPNALVDGAPVARID 145 >gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein [Methylobacterium extorquens PA1] gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta [Methylobacterium extorquens DM4] gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium extorquens PA1] gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit [Methylobacterium extorquens DM4] Length = 572 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + + E++ SR + +I L Q+ G +S + +A+ + +A+ Sbjct: 25 PKGRQVDPHAKVEIEELLGT--RSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G R ++VC + C + G ++L+E + ++ Sbjct: 83 AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C +AP V +G + + ++A DT P Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + AGG + L+ + G+ DD + Sbjct: 190 YDAYRAGGGYATLER--LRSGELPVDDVL 216 >gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacterium populi BJ001] Length = 572 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 26/211 (12%) Query: 3 VRRLAEE-------EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW 55 VRR A P ++ + + ++ SR + +I L Q+ G Sbjct: 8 VRRFAHPGRGRNVARGVPKGRQVDPQAKVEIEGLLGT--RSRQRDLLIEHLHLVQDTYGQ 65 Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEK 111 +S + +A+ + +A+ V E ATFY F + G R V+VC + C + G + Sbjct: 66 ISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEANIPRLTVRVCDSITCAMFGADA 125 Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 L+E + ++ + C G C +AP V +G + + ++A Sbjct: 126 LVETLQRELASDA--------VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA 177 Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 DT P + AGG L+ Sbjct: 178 -----EDTHAHIPDYVEYDAYRAGGGYVTLE 203 >gi|260886838|ref|ZP_05898101.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC 35185] gi|330839359|ref|YP_004413939.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas sputigena ATCC 35185] gi|260863437|gb|EEX77937.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC 35185] gi|329747123|gb|AEC00480.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas sputigena ATCC 35185] Length = 163 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 8/167 (4%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANI 67 P S + ++ V+ + Q ++ +L+ Q+ + +V A VA Sbjct: 2 NADPKSLEL--ATREKIDRVLEAHSYDPTQ--IVGILLDVQDLFERHYVPEPAAYYVAEK 57 Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 L + + + TFY P + +QVC + C + E L ++ + Sbjct: 58 LPLKISLIYDCLTFYASLSPVPR-AKYPIQVCDSVVCRINENETLFSALKSLLGIDVGEV 116 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT-PERLEEIIDAFS 173 DG + E+ C GAC AP V + + Y L E++EE++ Sbjct: 117 TYDGRFTLEKTPCFGACDIAPAVRVNGEVYGHLDSREKIEELLHTLQ 163 >gi|221201246|ref|ZP_03574286.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2M] gi|221206300|ref|ZP_03579313.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2] gi|221173609|gb|EEE06043.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2] gi|221179096|gb|EEE11503.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia multivorans CGD2M] Length = 166 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 8/146 (5%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q++ G+V + +A L+++ V + T+Y F+ +P R +Q+C Sbjct: 21 SLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIQMCR 79 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C GCE L E + + + H ++ ++ E V C G C +P + + Sbjct: 80 AEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSPSMTVN 139 Query: 154 KDTYEDLTPERLEEIIDAFSTGQGDT 179 + +TPE+ + ++ G+ Sbjct: 140 GVLHAKVTPEKFDALLADAVAHAGEA 165 >gi|170698429|ref|ZP_02889502.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria IOP40-10] gi|170136682|gb|EDT04937.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria IOP40-10] Length = 166 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 10/146 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ +R +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVE 139 +P R +Q+C C GCE L + + + D G ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGADAHAPGDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERL 165 C G C +P + + + +TPE+ Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKF 151 >gi|110589188|gb|ABG77103.1| NADH dehydrogenase I E subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 123 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 FS E ++ +++YP QSAV+ L Q+ G W++ A ++ VA LDMA I V Sbjct: 13 FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVY 72 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 E+ATFY+ ++L PVG + + +C CM+ ++++E ++ Sbjct: 73 EVATFYSMYELKPVG-KHKICICTNVSCMINNSDRIVEHLEKRLGIG 118 >gi|312795434|ref|YP_004028356.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) [Burkholderia rhizoxinica HKI 454] gi|312167209|emb|CBW74212.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) (EC 1.2.1.2) [Burkholderia rhizoxinica HKI 454] Length = 192 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 20/163 (12%) Query: 28 EVISRYPPSRCQS----AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 +++ + + ++ +++ +L Q+ G++ + I +A ++++ V + T+Y Sbjct: 21 RLVAHHTSAAARAVPGHSLLSVLHAIQDDAGYIPDSVIAPLAQAMNLSRAEVHGVITYYH 80 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGT--------- 132 F+ SP VQ+C C G E L + + D Sbjct: 81 HFRTSPPAA-VTVQLCRAESCRAMGSEALARHAETRTGHRFDACRHGDDHRAAPPAAPLA 139 Query: 133 ----LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + + C G C +P +M+ Y +TPE+L+ ++ A Sbjct: 140 GHPAVELQSAYCLGLCSTSPAMMVNGKPYARVTPEKLDTVLAA 182 >gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Gallionella capsiferriformans ES-2] Length = 626 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 3/149 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 ++ ++ + S ++++ +L+ AQE G++ AI+ +++ L + + +A+FY+ Sbjct: 12 LDPILRHH--SHNPNSLLQILIGAQEIHGFIHADAIDYLSSALKLPRAMIEGVASFYSFL 69 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 LSP G + T + G + L++ +++ +P + DG L C G C Sbjct: 70 YLSPHGEYRVLFSDNITD-RMAGNQNLMQRLCSQLWVEPGKASEDGLLWVNTTSCTGMCD 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174 P +++ LT ++++ I + Sbjct: 129 QGPAMLVNNIAINRLTQDKVDRICELIRE 157 >gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein [Mesorhizobium sp. BNC1] gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chelativorans sp. BNC1] Length = 557 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 20/204 (9%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M RR + P + + + V ++ R + +I L Q++ G +S Sbjct: 3 MQERR--PRDRGPKGRALDDAALAEVRTLLGT--RERRRDLLIEFLHLIQDRYGCLSARH 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVC 116 + +A + ++ V E+ATFY F + G A ++VC + CML G E LI Sbjct: 59 LRALAEEMRLSQAEVYEVATFYDHFDVVKEGEAAPPALTIRVCDSVSCMLAGAETLIAEL 118 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 + P + C G C AP +G + T E ++ + G+ Sbjct: 119 QA--GADP------AAIRIMRAPCMGRCAGAPAARVGDREVDGATAE---GLLGMAAAGE 167 Query: 177 GDTIRPGPQIDRISSAPAGGLTSL 200 P I + AGG L Sbjct: 168 TGVKVPE-YIGLDAYRGAGGYQLL 190 >gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Mycobacterium vanbaalenii PYR-1] Length = 603 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 11/189 (5%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + V+ R+ + ++ +L Q G + + VA L+ + ++E A+FY Sbjct: 3 ADIETVLRRHRYDGTR--LLDILWDIQHLFGHIPDEHLPQVATALNRTVLDIVETASFYH 60 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F +P G R + + T + G + + + + + + G E C G Sbjct: 61 FFHTTPSG-RHRIYLSNTVIAKMNGYQAVHDALELETGARFGGTDEAGMFGLFETACIGL 119 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT---SL 200 P +++ + LTP + +I+ G+ P + P G+ +L Sbjct: 120 SDQEPAMLLDGVVFTRLTPGTVADIVAQLKAGRVAADIVNP-----AGLPEDGIAYIDTL 174 Query: 201 LDNNSKKRG 209 +++ + RG Sbjct: 175 VESTVRTRG 183 >gi|171316164|ref|ZP_02905388.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MEX-5] gi|171098673|gb|EDT43468.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein [Burkholderia ambifaria MEX-5] Length = 166 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 10/146 (6%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86 + ++ R+ + +++ +L Q+ G+V + +A L+++ V + T+Y F+ Sbjct: 9 DVLVERH--AHAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66 Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSD----GTLSWEEVE 139 +P R +Q+C C GCE L + + +D G ++ E V Sbjct: 67 TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGEGADAHAPGDVALESVY 125 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERL 165 C G C +P + + + +TPE+ Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKF 151 >gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Labrenzia alexandrii DFL-11] Length = 558 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 19/201 (9%) Query: 6 LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 L+ + QP + + V ++ P R + +I L + Q+ G + + +A Sbjct: 7 LSRKPSQPKGRQLEDAALTEVQALLGEEP--RRRDLLIEHLHKIQDAYGCLEARRLRALA 64 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIH 121 + ++ V E+A+FY F + G V+VC + C L+G + L + Sbjct: 65 EEMRLSQAEVYEVASFYHHFDIVREGEVKPAPVTVRVCDSITCSLKGADALAASLES--G 122 Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P + ++V C G C AP +GK + + ++ +G Sbjct: 123 VDPS------KVRIQKVPCIGRCAAAPAAQVGKRAVDHANEMSVRSLL-----FEGTVAP 171 Query: 182 PGPQIDRISSAPAGGLTSLLD 202 PQ + A G +L+ Sbjct: 172 DIPQYTGFEAYRASGGYKVLE 192 >gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 641 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 13/206 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP + Q ++P+++ +++G++S +I ++ L M ++ Sbjct: 75 YNSNEAAGLDEILAKYP--KEQEYLLPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIDS 132 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135 I + Y F + AHV +C CM++G +L++ + DG+ + Sbjct: 133 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 191 Query: 136 EEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187 + G CVN AP +MI + +T+ L + +++ + A + + + P I Sbjct: 192 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRLKALKDLKKELPKWPKNNIK 251 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKK 213 + S G S ++ + KK Sbjct: 252 EMRSQRDGNGYSCMNTQAPIAEATKK 277 >gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp. TrichSKD4] Length = 537 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 18/199 (9%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + V +++ P R + +I L + Q+ +S A + +A+ + ++ V E+A+F Sbjct: 2 ALEEVQKLLQDEP--RRRDLLIEHLHKIQDAYDHLSAAHLRALADEMRLSQAEVYEVASF 59 Query: 82 YTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 Y F + G A ++VC + C L+G + L +V + ++ Sbjct: 60 YHHFDIVKEGQAAPAPLTIRVCDSVACSLKGADSLAKVL--------GETLDPAKIRIQK 111 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197 V C G C +AP V +GK ++ + ++ + G + P ++ + GG Sbjct: 112 VPCIGRCASAPTVQVGKRAVDNASELSVKAAV---FEGASEAEVPA-YVNLEAYRKDGGY 167 Query: 198 TSLLDNNSKKRGKKKKDDK 216 L D S K G D+ Sbjct: 168 QKLEDVRSGKVGALDIADQ 186 >gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196] gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Nitrosospira multiformis ATCC 25196] Length = 598 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + + + R+ + ++ +L+ QE ++ AI +A L++ + V A Sbjct: 8 PDIEQQIAIICQRHGCEPHR--LLQILIDVQEMYCFIPPEAITFIARHLNLPRVNVEGAA 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FY+ L P G R V + G E+L+ N++ +P + DG +S Sbjct: 66 GFYSFLSLEPAG-RYRVLFSDNVTDRMLGNEELMRHFCNRLWLEPGKVSEDGLISTNFTS 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C P +I L+ ER++ I D Sbjct: 125 CTGMCDQGPTALINGWPVTRLSKERIDLIAD 155 >gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Shewanella woodyi ATCC 51908] Length = 562 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 30/210 (14%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P SE + V ++I P R +I L R Q+ G +S I+ +A+ L++ Sbjct: 21 PKGRQLSEGAFNEVQQLIKDMPLRR--DLLIEYLHRVQDTFGHLSAPHIKALADHLNIGE 78 Query: 73 IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F L G ++VC + C + G ++L + + Sbjct: 79 AEVYEVASFYAHFDLIKEGQTPPPATTLRVCNSLSCTMAGADELADELNKTL-------- 130 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + + C G C AP V +G++ + TP +L++ I Sbjct: 131 DNQEVRVLRAPCMGRCNTAPTVALGRNHIDHATPAKLQQAI----------------SSN 174 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 +AP SL D + + + K S Sbjct: 175 AFTAPIPCYQSLTDYLAGGGYQFYEQMKAS 204 >gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 1198 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP R ++P+++ +++G++S +I ++ L M ++ Sbjct: 632 YNPNEAAGLDEILAKYPKERE--YLLPIIIEEHDKKGYISDPSIVKISEYLGMYPAQIDS 689 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135 I + Y F + AHV +C CM++G +L++ + DG+ + Sbjct: 690 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 748 Query: 136 EEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187 + G CVN AP +MI + +T+ L + +++ A + + + P I Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRRKALKDLKKELPKWPKNNIK 808 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKK 213 + S G S ++ + KK Sbjct: 809 EMRSQRDGNGYSCMNTQAPIAEATKK 834 >gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein [Ahrensia sp. R2A130] Length = 570 Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 18/189 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V ++ R +I L Q++ +S A I +A + ++ Sbjct: 18 PKGRQLDDGALANVRALLGDRKIQRDH--LIEYLHLIQDEYKCLSAAHIRALAEEMRLSQ 75 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 + V E+A+FY F + G ++VC + CM+ G E L Sbjct: 76 VEVYEVASFYDHFDVVKEGEPEPAPLTIRVCDSITCMMMGAEALHAGLE--TGIDRN--- 130 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C GAC AP IG + T ++ ++ +G+ + P D Sbjct: 131 ---AVRVVHAPCMGACDVAPAARIGDREVGNAT---VDGLLAMVESGEIGVLTP-DYKDL 183 Query: 189 ISSAPAGGL 197 + GG Sbjct: 184 AAYRAEGGY 192 >gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 559 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 14/163 (8%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 M+VR L + P E + + E++ R + +I L Q++ G +S A Sbjct: 1 MAVRELRPRDRGPKGRELDETAWSDIRELLG--EGERRRDLLIEYLHLIQDRFGCLSAAH 58 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVC 116 + +A + ++ V E+A+FY F + G +++C + C L G E LI Sbjct: 59 LRALAEEMRLSQAEVYEVASFYDHFDVVREGEEKPAPLTIRICDSISCALAGAEALIGEV 118 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 P + C G C AP IG + Sbjct: 119 SA--GVDP------AAIRVVRAPCMGRCATAPAARIGDREVDH 153 >gi|221090843|ref|XP_002168613.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Hydra magnipapillata] Length = 101 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 + V + K+ P D + EVEC GACVNAPMV I + YEDL P + EII++ Sbjct: 1 MSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESL 60 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215 + +G +PGP+ R +S PAGGLTSL + + G K + Sbjct: 61 A--KGIIPKPGPRSGRFASEPAGGLTSLT-SPPRGPGFKLQSG 100 >gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein [Leptothrix cholodnii SP-6] gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Leptothrix cholodnii SP-6] Length = 627 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 7/169 (4%) Query: 6 LAEEEFQPSSFSFSEESA---IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62 L E P + + ++ R+ R A++ +L Q + W+ R + Sbjct: 12 LESNEMAPVKIETTPPDRLQGDGMEALLRRH--GRNPHALVQILREVQAHQTWLPRDTLS 69 Query: 63 VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 ++A+ L + V +A+FY F + PVG + T ML G E L+ ++ Sbjct: 70 LLAHELGLTLAHVEGVASFYRFFHMQPVGEYRLLLSDNITDRML-GSEALLADLCQQLRV 128 Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170 +P +DG +S C G C P +++ L +R+ I + Sbjct: 129 EPGRMRADGRVSVARSSCTGLCDQGPALLVNHHHVITRLDAQRVARIAE 177 >gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxidans DMS010] gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Methylophaga thiooxydans DMS010] Length = 565 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 20/190 (10%) Query: 1 MSVRRLAEEEFQP----SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56 +S ++L +E P ++ V ++ SR + +I L + Q+ ++ Sbjct: 6 ISAQKLGKELKLPRAVGKGRQVDPKALSEVQALLG--DESRQKDLLIEHLHKIQDFYHYI 63 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKL 112 S + +A+ + ++ V E+ATFY F + V+VC + C + G E+L Sbjct: 64 SAPHLVALAHEMKLSRAEVYEVATFYHHFDVIKEDQTPPPPLTVRVCDSMTCEMLGAEEL 123 Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 I + Q + + V C G C AP+ ++G + E ++ E +D Sbjct: 124 IHSLEQGLGQD---------VRVQRVPCIGRCDKAPVAVVGMNPVEHADAAQVIEFVDK- 173 Query: 173 STGQGDTIRP 182 Q + I P Sbjct: 174 KQVQPEKIDP 183 >gi|29375955|ref|NP_815109.1| NAD-dependent formate dehydrogenase, gamma subunit, putative [Enterococcus faecalis V583] gi|227518654|ref|ZP_03948703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX0104] gi|227553184|ref|ZP_03983233.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis HH22] gi|229545927|ref|ZP_04434652.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX1322] gi|229550121|ref|ZP_04438846.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis ATCC 29200] gi|255972898|ref|ZP_05423484.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T1] gi|255975953|ref|ZP_05426539.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T2] gi|256618968|ref|ZP_05475814.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200] gi|256762395|ref|ZP_05502975.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T3] gi|256853025|ref|ZP_05558395.1| predicted protein [Enterococcus faecalis T8] gi|256958879|ref|ZP_05563050.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256962027|ref|ZP_05566198.1| NADH dehydrogenase [Enterococcus faecalis Merz96] gi|256965225|ref|ZP_05569396.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704] gi|257082643|ref|ZP_05577004.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol] gi|257085352|ref|ZP_05579713.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1] gi|257086847|ref|ZP_05581208.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6] gi|257089782|ref|ZP_05584143.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis CH188] gi|257415998|ref|ZP_05592992.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis AR01/DG] gi|257419200|ref|ZP_05596194.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis T11] gi|257422722|ref|ZP_05599712.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis X98] gi|293383049|ref|ZP_06628967.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis R712] gi|293388210|ref|ZP_06632731.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis S613] gi|294779581|ref|ZP_06744975.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis PC1.1] gi|307271122|ref|ZP_07552405.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4248] gi|307273328|ref|ZP_07554573.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0855] gi|307277474|ref|ZP_07558566.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2134] gi|307279195|ref|ZP_07560253.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0860] gi|307288116|ref|ZP_07568126.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0109] gi|307291375|ref|ZP_07571259.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0411] gi|312900654|ref|ZP_07759951.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0470] gi|312904132|ref|ZP_07763300.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0635] gi|312907362|ref|ZP_07766353.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis DAPTO 512] gi|312909978|ref|ZP_07768826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis DAPTO 516] gi|312952392|ref|ZP_07771267.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0102] gi|29343417|gb|AAO81179.1| NAD-dependent formate dehydrogenase, gamma subunit, putative [Enterococcus faecalis V583] gi|227073911|gb|EEI11874.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX0104] gi|227177710|gb|EEI58682.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis HH22] gi|229304707|gb|EEN70703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis ATCC 29200] gi|229308995|gb|EEN74982.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis TX1322] gi|255963916|gb|EET96392.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T1] gi|255968825|gb|EET99447.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T2] gi|256598495|gb|EEU17671.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200] gi|256683646|gb|EEU23341.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis T3] gi|256711484|gb|EEU26522.1| predicted protein [Enterococcus faecalis T8] gi|256949375|gb|EEU66007.1| NADH dehydrogenase [Enterococcus faecalis DS5] gi|256952523|gb|EEU69155.1| NADH dehydrogenase [Enterococcus faecalis Merz96] gi|256955721|gb|EEU72353.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704] gi|256990673|gb|EEU77975.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol] gi|256993382|gb|EEU80684.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1] gi|256994877|gb|EEU82179.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6] gi|256998594|gb|EEU85114.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis CH188] gi|257157826|gb|EEU87786.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ARO1/DG] gi|257161028|gb|EEU90988.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis T11] gi|257164546|gb|EEU94506.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus faecalis X98] gi|291079714|gb|EFE17078.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis R712] gi|291082394|gb|EFE19357.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis S613] gi|294453371|gb|EFG21779.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis PC1.1] gi|306497606|gb|EFM67139.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0411] gi|306500852|gb|EFM70170.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0109] gi|306504320|gb|EFM73532.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0860] gi|306505739|gb|EFM74917.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2134] gi|306509855|gb|EFM78880.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0855] gi|306512620|gb|EFM81269.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4248] gi|310626390|gb|EFQ09673.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis DAPTO 512] gi|310629776|gb|EFQ13059.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0102] gi|310632608|gb|EFQ15891.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0635] gi|311289936|gb|EFQ68492.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus faecalis DAPTO 516] gi|311292135|gb|EFQ70691.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0470] gi|315027370|gb|EFT39302.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX2137] gi|315029990|gb|EFT41922.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4000] gi|315033791|gb|EFT45723.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0017] gi|315036876|gb|EFT48808.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0027] gi|315147885|gb|EFT91901.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX4244] gi|315150638|gb|EFT94654.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0012] gi|315153355|gb|EFT97371.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0031] gi|315155868|gb|EFT99884.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0043] gi|315157965|gb|EFU01982.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0312] gi|315164268|gb|EFU08285.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1302] gi|315166638|gb|EFU10655.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1341] gi|315170078|gb|EFU14095.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1342] gi|315174469|gb|EFU18486.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1346] gi|315575556|gb|EFU87747.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0309B] gi|315578477|gb|EFU90668.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0630] gi|315580002|gb|EFU92193.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX0309A] gi|327535029|gb|AEA93863.1| putative NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis OG1RF] gi|329571420|gb|EGG53107.1| Respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis TX1467] Length = 162 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 3/134 (2%) Query: 42 VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++ +L+ Q +EG++ + ++VA L + RV EI +FY + P + +++C Sbjct: 23 ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 +TPC G + EV + DG + + C GAC P++ I + Sbjct: 82 NSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKDTVFSQ 141 Query: 160 LTPERLEEIIDAFS 173 LT E++ ++I Sbjct: 142 LTEEKIYQLIQHLQ 155 >gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72] gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72] Length = 602 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V + R+ + S+++ +L+ Q++ G+++ +A+ VA LD+ V +A FY+ Sbjct: 8 AGVAAAVQRHGAA--PSSLLQVLIAVQDRLGYLAPSALTEVAAALDLPRAHVEGVAGFYS 65 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 SP G R + ++G +L+ K+ +P + DG + C G Sbjct: 66 FLHTSPAG-RYRILFADNVIERMQGSAELMHALCGKLWVEPGRVSEDGLVGVAPTSCIGM 124 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170 P ++ LT R+ EI + Sbjct: 125 GDQGPAALVNGRPITRLTHARINEIAE 151 >gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400] gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Burkholderia xenovorans LB400] Length = 610 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V+ ++ R A++ +L AQ + W+SR + +A L + V +ATFY F Sbjct: 21 VDALLLR--ARHDPHALVQILREAQARHTWLSRELLGYIAGALGLTLAHVEGVATFYRFF 78 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 SP G + T ++G L++ ++ + DG +S + C G C Sbjct: 79 HTSPAGEYRVLFSDNITD-RMQGNAALLDDLCRRLGVQRGQMREDGRVSVDFCSCTGLCD 137 Query: 146 NAPMVMIGKD-TYEDLTPERLEEIID 170 P ++I L R+ ++ + Sbjct: 138 QGPSLLINHHQVVTRLDAGRVAQLAE 163 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 19/204 (9%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + P + V E++ SR +I L + Q++ G ++ + + +A + Sbjct: 20 KRQAPKGRRVDPAALAEVRELLG--DESRQADLLIEHLHKIQDKFGHLASSHLAALAQEM 77 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 +A V E+A+FY F + G A V+VC C + G + L+ + ++ Sbjct: 78 RLAQTEVYEVASFYHHFDIVKEGDAAPQALTVRVCDGLSCEMAGAKDLLAKLPKILGKE- 136 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 + C G C AP+ ++G++ + T E ++ ++ + G Sbjct: 137 --------VRVIAAPCVGRCEQAPVAVVGQNPVINATCEAVQTAVEK----KEIVQAEGS 184 Query: 185 QIDRISSAPAGGLTSLLDNNSKKR 208 D + GG L S +R Sbjct: 185 ITDFSAYQNEGGYALLKKCVSGER 208 >gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5] Length = 620 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 13/185 (7%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + V+ L ++ GW+S A+ + L ++ V +ATFY F +P R V Sbjct: 52 QRHLVMEALHAVNDRVGWISPGALNYIGKRLSVSAADVYSVATFYGLFSTNPRPKR-VVH 110 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---MVMIGK 154 VC CM RG ++L K+ W+ C G C AP V G Sbjct: 111 VCTDIACMARGSKELCASLEKKLGPASAMTG------WKHSPCLGVCERAPAALAVEAGD 164 Query: 155 DTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 +E L P ++E++ A + G P I + A GL L K + Sbjct: 165 PPHEHLIGPATMDEVVLALNDGPEALAAEAPPIMAVPQAGQDGLMLLK--RIGKVDPESI 222 Query: 214 DDKIS 218 DD ++ Sbjct: 223 DDYLA 227 >gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium HTCC2255] Length = 565 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 19/210 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P SE++ V ++ R +I L Q++ +S + +A L ++ Sbjct: 22 PKGRQVSEDAIADVKSLLGN--RERRADLLIEYLHLIQDKFKHLSTQHLAALAEELRLSQ 79 Query: 73 IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F + ++VC + C L G + L+ K + Sbjct: 80 TEVYEVASFYAHFDIVKEDEEIPPSLTIRVCDSLSCELAGAQDLLFKLGEKYNGG----- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187 G + C G C AP + IG + ++ E++E+ I + + P + Sbjct: 135 --GKVRVVRAPCMGRCDTAPTLEIGHNHIDNANEEKVEKAI----ITKDFHPKIPNYENL 188 Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + SA GG L + + R + D+I Sbjct: 189 KDYSAN-GGYAELQNLRNGSRTPDQIQDEI 217 >gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15] Length = 571 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 16/175 (9%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGT 92 R + +I L Q+ +G++S A + +A+ +++ V E ATFY F + Sbjct: 42 RHRDRLIEHLHLIQDADGYLSMARLRALASFMNLPMADVYETATFYAHFDVVHDEQTPPP 101 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L G L + + + C G C AP+V + Sbjct: 102 AITLRVCDSLSCQLAGASALHKTLADG--------TDPAQVRVVHAPCMGRCDTAPVVAV 153 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207 G + T E + ++ Q D I D S AGG L D + Sbjct: 154 GHHHVGNATAETVGAAVEQ-QQVQPDEIHWQKLADYRS---AGGYQLLKDCREGR 204 >gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1] gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 563 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 20/211 (9%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP V V PP+R +I L Q+ G + + +A+ L++A Sbjct: 17 QPRGRRPRPADIRAVRAVSGGLPPTR--DLLIEHLHCLQDHYGHLKAEHLVALAHELNLA 74 Query: 72 YIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 V E+ATFY F + V+VC C L G + L++ + Sbjct: 75 PAEVYEVATFYHHFDVVHDNAAPPPPITVRVCDAIGCALSGADDLVQALEAGLG------ 128 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 DG + + V C G C AP+ ++G + + ++ I + + Sbjct: 129 --DG-VRVQRVPCVGRCDQAPVAVVGCNPVGQASLATVQARIAQ-RALRPELPA---GTV 181 Query: 188 RISSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217 R S+ AGG L D S +R D + Sbjct: 182 RYSAYRAAGGYRVLADCLSGRREPASVIDTL 212 >gi|300245947|gb|ADJ94031.1| putative benzoate-degrading protein BamG [Clostridia bacterium enrichment culture clone BF] Length = 129 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 + + I TFY QF+L P+G +QVC T C L EK+ E + + K H Sbjct: 1 MTGFPTSVLYSIVTFYAQFRLEPIGD-NLIQVCHGTACHLADAEKISEAIQLESGAKSGH 59 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 + DG + E+V C G C P++ + ++TY ++PE ++I G Sbjct: 60 TSPDGKFTVEKVACLGCCSLGPVITVNEETYARMSPEAARKLIKQRKKG 108 >gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia sp. 1NLS2] Length = 616 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 18/192 (9%) Query: 35 PSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 R QS V+ L ++ GW+S A+ + L +A V +ATFY F + Sbjct: 44 SGRSQSRRHLVMEALHAVNDRVGWISPGALNYIGKRLGIAAADVYSVATFYAMFSTNMRP 103 Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS-WEEVECQGACVNAP-- 148 R V VC CM RG +++ ++ G +S W+ C G C AP Sbjct: 104 KR-IVHVCTDIACMARGSKEVCADLEKRLG-------PAGAMSGWKHSPCLGVCERAPAA 155 Query: 149 -MVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206 V G +E L P +E++ A + G P + A GL L Sbjct: 156 LAVEAGDPPHEHLIGPATADEVVLALNNGPVALAAEAPPGMAVPQAGQEGLMLLK--RVG 213 Query: 207 KRGKKKKDDKIS 218 K + DD ++ Sbjct: 214 KVDPESIDDYLA 225 >gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum aromaticum EbN1] Length = 585 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 18/165 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97 +I L R Q++ G + + +A + +A V E+ATFY F P G +A V+ Sbjct: 57 LIEYLHRLQDEHGALHADHLAALAEAMKLARAEVFEVATFYHHFDFVPAGGKAPPALTVR 116 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C + G +L +++ + + + V C G C +AP+ ++G+ Sbjct: 117 VCESLGCAMAGGAELAASLASQLGAE---------VRVQRVPCVGRCDSAPVAVVGQRPV 167 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 +R+ ++ G+ P P+ R + A L D Sbjct: 168 LHADADRVAAVVAG-----GERDEPLPEAIRFDAYRAAAGYRLWD 207 >gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylocella silvestris BL2] Length = 603 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 6/195 (3%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 V +++ + R + + + + Q++ G++S A++ +A L + + + ++A+FY+ Sbjct: 7 AAVKDIVKEFGADRTR--LTDIALAVQQRFGFISDDAVQAIATGLGVHAVEIEDMASFYS 64 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 +P G R +++ T ++G + + ++DG + E G Sbjct: 65 FLDRAPRG-RFRIRLSKTPISFMKGATDVARAFEEALGLSLGDTSADGQFTLEWTSDIGM 123 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST-GQGDTIRPGPQIDRISS-APAGG-LTSL 200 P +I LTPE + +I+ A G D PQ + P +SL Sbjct: 124 ADQEPSALINSTVLTALTPEDVPQIVAALRRCGPDDGPPRFPQHKPQGAMLPKAAIRSSL 183 Query: 201 LDNNSKKRGKKKKDD 215 + G+ + D Sbjct: 184 VQPGPLLSGRPGRAD 198 >gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum USDA 110] gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110] Length = 567 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 22/209 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P +A + +++ P R + +I L Q++ +S A + +A+ + +A+ Sbjct: 25 PKGRQVDPTAAHEIEQLLGDRP--RRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLAF 82 Query: 73 IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E ATFY F + G ++VC + C + G +L++ + Sbjct: 83 AEVFETATFYAHFDIVKEGEPDIAPLTIRVCDSLTCEMLGGGQLLQDLQRSAGPG----- 137 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP+ +G T + + +GD P Sbjct: 138 ----IRVVRAPCVGLCDAAPVAEVGHHFVHQATAAEVLA-----TAARGDVHAHIPAYVD 188 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217 + G LL+ + G KDD + Sbjct: 189 YDAYVQDGGYKLLER--LRSGAVSKDDIL 215 >gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] Length = 1206 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A ++E++++YP + ++P+++ +++G++S +I ++ L M ++ Sbjct: 631 YNANEAAGLDEILAKYPKEKE--YLMPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIES 688 Query: 78 IATFYTQFQLSPVGTRAHVQVC-GTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLS 134 I + Y F + +C CM++G +L++ + DG+ + Sbjct: 689 ILSSYHYFPREHTIA-ILMSICVHCHNCMMKGQGRLLKTIQETYDIHETHGGVAKDGSFT 747 Query: 135 WEEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 + G CVN AP +MI + +T+ L + +++ + + + + + Sbjct: 748 LHTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLGDNIDQRLKSLKNLKKELPKWPKNNI 807 Query: 188 R 188 R Sbjct: 808 R 808 >gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] Length = 561 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 20/207 (9%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + + V ++ P R + +I L Q++ G++S A + +A L + Sbjct: 21 PKGRQLDDAALEEVRALLG--PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQ 78 Query: 73 IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+A+FY F L ++VC + C L + + P Sbjct: 79 AEVWEVASFYAHFDLVKEDELPPPALTIRVCESLSCELA--GAEALLAALEEGLDPAE-- 134 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C G C AP++ +G + TPE ++A G+T P + Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHRHIDHATPETARAAVEA-----GETHPVIPDYEA 185 Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKD 214 + AGG ++L + ++ Sbjct: 186 FGTYRAAGGYSALERLREGGDWEAVQE 212 >gi|323480623|gb|ADX80062.1| NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis 62] Length = 148 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 42 VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++ +L+ Q +EG++ + ++VA L + RV EI +FY + P + +++C Sbjct: 23 ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 +TPC G + EV + DG + + C GAC P++ I + Sbjct: 82 NSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKDTVFSQ 141 Query: 160 LTPERL 165 LT E++ Sbjct: 142 LTEEKI 147 >gi|255659121|ref|ZP_05404530.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544] gi|260848566|gb|EEX68573.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544] Length = 168 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 8/164 (4%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ--EQEGWVSRAAIEVVANILDMA 71 + E ++ V+ + Q ++ +L+ Q + +V +A+ L M Sbjct: 7 KEYPLPSELQERIDLVLESHDCDPTQ--IVGILLEVQALNERHYVPEPTAYYIADRLKMR 64 Query: 72 YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRNKIHQKPLHRNS 129 + + FY++ P + +QVC + C + +LI + K Sbjct: 65 VTNIFDCLKFYSELSPVPR-AKYPIQVCCSPACRVNRVDSHRLISTLERLLDIKLGETTY 123 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172 DG + E+V C GAC AP V I Y+ L T E++E ++ + Sbjct: 124 DGRFTLEKVTCIGACDRAPAVRINGHVYDHLDTQEKIETLLRSL 167 >gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus str. Bath] gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 610 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 3/149 (2%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E +N ++ + Q ++ +L Q + VS A + VA L + +V + Sbjct: 5 EYEHRIINRIVENHGRDTRQ--LLSILREVQHEFRQVSPEAQQKVAESLGVCITQVRAVV 62 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 FY+ P+G + +++ + + G ++ K+ +P DG + Sbjct: 63 DFYSFLSTVPLG-KFDIRISDSITDHMLGSREVAAGLCRKLGIQPGEPRQDGRVGLSFTS 121 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEI 168 C G C P +I LT +R ++I Sbjct: 122 CTGLCDQGPAGLINGYAIPRLTEDRTDQI 150 >gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 219 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 8 EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 E QP +F S + Y R +A I L Q+Q GWV AI +A Sbjct: 108 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 165 Query: 66 NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 ++L + V +ATFY+Q PVG R ++ C + C + G + + K Sbjct: 166 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALGKK 218 >gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien [Candidatus Puniceispirillum marinum IMCC1322] gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 25/214 (11%) Query: 10 EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69 ++P + V ++ P+R +I L Q+ E +S + +A+I+ Sbjct: 27 RYKPKGRMLDPVALDEVRALLGNISPTR--DMLIEYLHMIQDSEKHLSARHLAALAHIMR 84 Query: 70 MAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125 + V E+A+FY F L A V+VC + CM+ G E ++E + Sbjct: 85 IPMAEVWEVASFYDHFDLVKEDETAPPLCTVRVCTSLSCMMAGGETMLEKLQPY------ 138 Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + + + C GAC AP +G E + +A + D P Sbjct: 139 ---ASDKVRFVPAPCIGACDKAPAAAVGHKLVEHAS-------FEALKAVEEDGHPEIPA 188 Query: 186 ID-RISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 R A G SLL + G+K +D +S Sbjct: 189 TARRFDDYVADGGYSLL--KALLAGEKTAEDVLS 220 >gi|317970223|ref|ZP_07971613.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp. CB0205] Length = 145 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 14/153 (9%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 ++ V+ R+ A++ +L AQ+ G +S + + VA +L + RV A+FY Sbjct: 6 DALDPVLRRH--GYQAEALLEVLAAAQQIYGHLSPSLLRHVAGLLRLPLSRVQGTASFYH 63 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+LSP R VC T C ++G L + + + Q V C G+ Sbjct: 64 LFRLSPP-PRHQCLVCTGTACHVQGAGLLFKALQTTLKQPWCE--------LGSVRCIGS 114 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 C P++++ D + T + + Sbjct: 115 CSGGPLLVVDGDIWTHQTSATA---LAGLRRLK 144 >gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 585 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 18/195 (9%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + + ++ R + +I L Q++ G +S + +A+ + M V E Sbjct: 30 DPAALAEIEALLGA--AHRERDELIEHLHALQDRFGHLSLRHLRALADWMRMPMAEVYET 87 Query: 79 ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 ATFY F + PV V+VC + PC L G + L + + Sbjct: 88 ATFYAHFDVVREDEPVPPALTVRVCDSLPCQLAGAQALRAALDAALDPA--------RIR 139 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 C G C AP+ +G+ TP ++ A + G D P A Sbjct: 140 VLRAPCMGRCDQAPVAQLGRRHLSRATPA---AVLAALARGALD-PEPIAWQRLADYRAA 195 Query: 195 GGLTSLLDNNSKKRG 209 GG T L S + G Sbjct: 196 GGYTLLQRLRSGETG 210 >gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha proteobacterium BAL199] Length = 582 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 21/193 (10%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 + V ++ P R + +I L Q++ G +S + +A+ + +A Sbjct: 41 NKGRQIDPAALDEVRFLLGDAP--RRRDLLIEHLHAVQDKFGHLSARHLAALAHDMRLAM 98 Query: 73 IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128 V E+ATFY F + V+VC + C L G EK+++ ++ Sbjct: 99 AEVWEVATFYAHFDVVKEDAAAPPAVTVRVCDSLSCALAGAEKVLDTLQSGSGSD----- 153 Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 + C GAC AP+ +G E + I A R Sbjct: 154 ----VRVIRAPCMGACDKAPVAAVGHHLVEHADAASVARHIAA------PDHASALNPVR 203 Query: 189 ISSAPAGGLTSLL 201 +++ A G +LL Sbjct: 204 LAAYRADGGYALL 216 >gi|226323627|ref|ZP_03799145.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758] gi|225207811|gb|EEG90165.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758] Length = 103 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVE 139 FY F P G + ++VC T C +R ++E ++ H + D + E V Sbjct: 5 FYENFSFEPKG-KYVIKVCDGTACHVRKSIPILEALYKELGLNEHKHTSDDMLFTVETVS 63 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 C GAC AP + + + + ++PE++ ++++ + + Sbjct: 64 CLGACGLAPAITVNDEVHPKMSPEKVIKLLEELRGEENE 102 >gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 569 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 23/203 (11%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + V + P R + +I L ++ G ++ + +A+ L ++ Sbjct: 21 QPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASELRLS 78 Query: 72 YIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 V E+ATFY F + V+VC C L G + LI+ + + Sbjct: 79 MTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALLGTE 138 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + C G C AP ++G++ + T E ++ + A + P Sbjct: 139 ---------VRVVAAPCIGRCEKAPAALVGQNPVDTATAEAIDAAVQA----KAVRHAPE 185 Query: 184 PQIDRISSAPAGGLTSLLDNNSK 206 P I + GG L S Sbjct: 186 PYIGYDAYRKDGGYALLKSLASG 208 >gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans K601] Length = 633 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 15/201 (7%) Query: 3 VRRLAEEEF-QPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +RR A + QP ++ V +I R P + +I L ++ G + Sbjct: 22 IRRKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERH 76 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCR 117 + +A ++++ V E+A+FY F++ G R ++VC + C L G +L+ Sbjct: 77 LVALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLP 136 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 ++ G + + V C G C AP+ ++ + T ER+ +D Sbjct: 137 GRLRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVDLMPERAP 191 Query: 178 DTIRPGPQIDRISSAPAGGLT 198 P + P +T Sbjct: 192 ALHPQSPAAMVFDAVPESAIT 212 >gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Alicycliphilus denitrificans BC] gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Alicycliphilus denitrificans BC] Length = 633 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 15/201 (7%) Query: 3 VRRLAEEEF-QPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +RR A + QP ++ V +I R P + +I L ++ G + Sbjct: 22 IRRKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERH 76 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCR 117 + +A ++++ V E+A+FY F++ G R ++VC + C L G +L+ Sbjct: 77 LVALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLP 136 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 ++ G + + V C G C AP+ ++ + T ER+ +D Sbjct: 137 GRLRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVDLMPERAP 191 Query: 178 DTIRPGPQIDRISSAPAGGLT 198 P + P +T Sbjct: 192 ALHPQSPAAMVFDAVPESAIT 212 >gi|326386801|ref|ZP_08208421.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208720|gb|EGD59517.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 142 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%) Query: 24 IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 + E+I+ + + + ++P+L Q + G VS A +A L+++ V + +FY Sbjct: 5 ERIAEIIADH--TGREGPLLPILHDVQTEFGHVSPEAEGQIALALNLSRAEVHGVVSFYH 62 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ +P R V++C C RG E L+ + + V C G Sbjct: 63 DFREAPD-PRPCVELCRAEACQARGVEALVAAAEDAAG---------SRVRLATVYCLGL 112 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C P +G+ + L ++L ++I+A Sbjct: 113 CSVGPSARVGERLHARLDADKLVKVIEAAR 142 >gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 569 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 23/198 (11%) Query: 12 QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71 QP + V + P R + +I L ++ G ++ + +A+ L ++ Sbjct: 21 QPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASELRLS 78 Query: 72 YIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 V E+ATFY F + V+VC C L G + LI+ + + Sbjct: 79 MTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALLGTE 138 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + C G C AP ++G++ ++ T E + ++A + P Sbjct: 139 ---------VRVIAAPCIGRCEKAPAALVGQNPVDNATAETIGTAVEA----KAVRHAPE 185 Query: 184 PQIDRISSAPAGGLTSLL 201 P ID + GG L Sbjct: 186 PHIDYDAYRRDGGYALLK 203 >gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Methylobacter tundripaludum SV96] Length = 609 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 31 SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 S Y + ++ +L + Q + ++ AAIE ++ +L++ +++ + FY+ F L+P Sbjct: 12 SHYQATH----LLQILRQIQSRYHYIPEAAIEQLSGLLNIPRTQIIGVVEFYSFFHLAPR 67 Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + + + + G + L + K+ DG +S + C G C P Sbjct: 68 GQ-YELLISDSITDHMLGKKDLFDYLAKKLDVAVGEVREDGVVSLDNTSCTGMCDQGPAG 126 Query: 151 MIGKDTYEDLTPERLEEIID 170 ++ L +++I + Sbjct: 127 LVNGLALTRLDQSGIDKIAE 146 >gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nitrosococcus halophilus Nc4] Length = 564 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 15/160 (9%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 R L + P ++ + ++ P R +I L + Q+ +S A I Sbjct: 13 RALRKARPTPKGRQVDFKALEEIRALLGDSP--RRADLLIEFLHQIQDTYHHISAAHIAA 70 Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +A L ++ V E+ATFY F + G V+VC + C + G + LI + Sbjct: 71 LARELKLSQTEVYEVATFYHHFDVIKEGESPPPPLTVRVCDSVTCEIGGAKTLIAELKAV 130 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + + + ++V C G C AP+ ++G + Sbjct: 131 LGEG---------VRVQKVPCVGRCEQAPVAVVGVNPIGH 161 >gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera sp. MZ1T] Length = 627 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113 GW+ A + +A L + RV A+FY+ P G + T ML G + L+ Sbjct: 31 GWLPPATLSALAGALGIPRARVESTASFYSFLHTRPAGEYRILFSDNITDRML-GNQALM 89 Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168 + +K+ +P + DG C G C P ++ T LT ER++E+ Sbjct: 90 QTLCDKLWLQPGKVSEDGLARVSTTSCTGMCDQGPALLANGRTITRLTLERIDEM 144 >gi|318041124|ref|ZP_07973080.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp. CB0101] Length = 152 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 21/161 (13%) Query: 20 EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 E +N V+ R+ +I +L AQ+ G +S + +A L + + RV A Sbjct: 8 AELYEGLNSVLQRH--GHQAHGLIEVLNHAQQLYGHLSEPLLRHIARQLQLPFSRVQGTA 65 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR----NKIHQKPLHRNSDGTLSW 135 +FY F+ R VC T C + G +L+ R ++ + Sbjct: 66 SFYHLFRFK-APARHSCLVCTGTACHVLGAAQLLADLRNAAMEELGVELG---------- 114 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 V C G C AP+V++ + + L+ ++ + Sbjct: 115 -SVRCIGTCSGAPLVVVDGEVWNHLSSA---AVLKRLRELE 151 >gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit [Mariprofundus ferrooxydans PV-1] Length = 588 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R ++ L Q+Q + + +I +A L + ++ + FY+ F SP G R + Sbjct: 16 RQNDHLLHRLYDLQQQFHHIPQQSIINLATELKLPISQIEGVVDFYSFFHRSPRG-RYDI 74 Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 T C G +++ K++ P + +DG++S + C G C P +++ T Sbjct: 75 LFSNCTSC---GDLAMMQQLCEKLNVSPGNTRADGSVSIDATSCIGMCDQGPALLVNGRT 131 Query: 157 YEDLTPERLEEI 168 L+ +RLE I Sbjct: 132 ITQLSAQRLEMI 143 >gi|218260382|ref|ZP_03475731.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii DSM 18315] gi|218224553|gb|EEC97203.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii DSM 18315] Length = 92 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 ++P G + + VC T C +RG EK+++ + ++ K DG S + + C GAC Sbjct: 2 MTPKG-KYPISVCLGTACYVRGAEKVLDEFQRQLEIKVGETTPDGLFSLDCLRCVGACGL 60 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172 AP+V I Y LTPE++ +I+ + Sbjct: 61 APVVTIAGKVYGRLTPEKVRDILSEY 86 >gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893] Length = 571 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 16/175 (9%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGT 92 R + +I L Q+ G++S + +A+ +++ + E ATFY F + Sbjct: 42 RHRDRLIEHLHVVQDACGYLSMPHLRALASFMNLPMAAIYETATFYAHFDVIHDEQAPPP 101 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 ++VC + C L G E L + + P T+ C G C AP+V + Sbjct: 102 AITLRVCDSLSCQLAGAEALHQALSD--GADP------ATVRVRRAPCMGRCDTAPVVEV 153 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207 G + + ++ + I+ S+ GG L D + + Sbjct: 154 GHHHVCHANAQNVGAAVEQ-GQIHPEEIKWQRLAGYCST---GGYGLLTDCHEGR 204 >gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105] Length = 573 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 32/223 (14%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 +R + Q ++ SE V ++ P + + +I L + Q+ G + + + Sbjct: 18 QRGKPKGRQAAALDMSE-----VLAILG--PGAHRRDLLIEYLHQLQDHLGCLPKTHLSA 70 Query: 64 VANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +A L ++ V E+ATFY F + + V V+VC C + G E+LIE Sbjct: 71 LAECLKLSQTEVFEVATFYHHFDVVESKNAVNHTLTVRVCNGPSCCMAGAEELIEKLPTL 130 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 + T+ + V C G C AP V +G+ ++ G Sbjct: 131 LG---------STVRVQAVPCIGRCEQAPAVAVGQHEMGWANHHQI------MEAAFGQH 175 Query: 180 IRPGPQIDRISSAPA----GGLTSLLDNNSKKRGKKKKDDKIS 218 + P +S P GG L S +R + D +S Sbjct: 176 TKALPPH--CASEPQYKATGGYQLLQACVSGQRTVESVIDTLS 216 >gi|317125323|ref|YP_004099435.1| formate dehydrogenase, subunit gamma [Intrasporangium calvum DSM 43043] gi|315589411|gb|ADU48708.1| formate dehydrogenase, gamma subunit [Intrasporangium calvum DSM 43043] Length = 157 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85 V + ++ R A++ +L A + G + R +E +A++L+++ V + +FY F Sbjct: 19 VRRLAEQHATDR--GALMVVLHAAVAELGHLERTDVETIADVLNLSVADVHGVVSFYKDF 76 Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P V +C C G E + R ++ + + +EV C G C Sbjct: 77 RTDPAPA-HTVHLCRGEACQAVGAESVFAQARAQLAHRDD-------VEVDEVFCLGNCA 128 Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172 P M+ + L+ ERL + + + Sbjct: 129 LGPSAMVDGRLHGRLSGERLLGLTEEW 155 >gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 656 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 + + ++P L ++ GW+SR A++ + L + +A+FY F L Sbjct: 46 HSARDRRDLLLPALHAVNDRVGWISRPALDHICRRLTVPPAEAYAVASFYAMFALRRRPR 105 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V +C C G +++ ++ H DG +W E C G C AP + Sbjct: 106 R-VVHLCTDIACAAAGSDRMRARLTERLGPPGGH---DGEAAWHESPCLGMCERAPAAL 160 >gi|218508847|ref|ZP_03506725.1| NADH dehydrogenase subunit E [Rhizobium etli Brasil 5] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 62/90 (68%), Positives = 68/90 (75%) Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 ++GTLSWEEV C GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I+PG QIDR Sbjct: 1 AEGTLSWEEVVCLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASIKPGTQIDR 60 Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218 I SAP GG TSL K R + KK D S Sbjct: 61 IFSAPEGGPTSLTTEEPKARTRAKKADAES 90 >gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Pseudonocardia dioxanivorans CB1190] Length = 626 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 33 YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 + + ++P L + G++S A+ VA L + V +ATFY F + P Sbjct: 41 HEARGRRHLLLPALHAVSDAVGYLSEGALNHVATRLSVPPADVYGVATFYAMFTVEPR-A 99 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V VC C G E L + + + + W C G C AP VM Sbjct: 100 RRVVHVCDDVACGPVGGEDLAARLTADLGPEGVGEEA----CWVRSPCLGLCERAPAVM 154 >gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 600 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + S V +I P + +I L + + + + +A +++ V E+ Sbjct: 37 DDASVAEVRALIGAAP--HRRDLLIEHLHKLNDAYRCLHDRHLVALAKEMNIPMAEVYEV 94 Query: 79 ATFYTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 ATFY F++ V+VC C + G + L+ + + N D + Sbjct: 95 ATFYHHFEVVRGDETVPQLTVRVCDGLSCEMAGAKDLLARLPSLLG------NED--VRV 146 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C AP ++ + T E + +++ G + Sbjct: 147 IPAPCIGRCEQAPAAVVHQHPVPRATVESIAQLVKDAKGGHPSATQ 192 >gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus S110] Length = 612 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 12/158 (7%) Query: 19 SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E + + V +I P + +I L + + + + +A +++ V E Sbjct: 48 DEAALVEVRTLIGARPAEGHRRDLLIEHLHKLNDAFRCLHDRHLVALAREMNIPMAEVYE 107 Query: 78 IATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +ATFY F++ G A V+VC C L G L+ + + G + Sbjct: 108 VATFYHHFEVV-RGDEAAPGLTVRVCDGLACELAGARDLLARLPELLGVEG------GDV 160 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C G C AP V + + T ++ + + + Sbjct: 161 RVIAAPCIGRCEQAPAVAVDRQAVPLATTAKVLQALKS 198 >gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces viridochromogenes DSM 40736] Length = 607 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ + L + +ATFY F + P + Sbjct: 51 RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVKPRPA-TVLH 109 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 VC C G +L ++ +S E C G C AP + Sbjct: 110 VCTDLACAASGAPELCAGIEARLGPGSG-------VSVERSPCLGLCERAPAAL 156 >gi|19115849|ref|NP_594937.1| conserved eukaryotic protein [Schizosaccharomyces pombe 972h-] gi|3183091|sp|O13691|NDUV2_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit homolog C11E3.12, mitochondrial; Flags: Precursor gi|2330670|emb|CAB11191.1| conserved eukaryotic protein [Schizosaccharomyces pombe] Length = 162 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 17/172 (9%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILD 69 +P F F E+ +++RYP +A++PLL AQ Q G W+ A+ +A++ Sbjct: 1 MKPIRF-FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAG 59 Query: 70 MAYIRVLEIATFY-TQFQLSPVGTRAHVQVCGTTPCMLR----GCEKLIEVCRNKIHQKP 124 ++ V + Y F P R V++C + C G CR+ Sbjct: 60 VSIDYVHSLILAYPNDFFWRPKKPR--VRICNSWMCQQAAEEQGNSNWDSQCRSV----- 112 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176 G E C G C P + I Y T E+L +I++A + + Sbjct: 113 --ATKYG-FDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALTQKK 161 >gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas sp. 3As] Length = 597 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 19/167 (11%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR + QP S ++ V ++I P + +I L +Q + + Sbjct: 27 RRGKLKGRQPES-----QALAEVQQLIGAGP--HRRDLLIEHLHLINDQWHGLHERHLVA 79 Query: 64 VANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +A ++++ V E+ATFY F + V+VC + C L G L++ + Sbjct: 80 LARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGANDLLQRLPQLL 139 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 + + C G C AP+ ++G+ TP+ + E Sbjct: 140 GAE---------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDTVRE 177 >gi|325663454|ref|ZP_08151864.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470353|gb|EGC73584.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium 4_1_37FAA] Length = 153 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%) Query: 23 AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + E+I Y Q ++ +L Q+ +G + A + VA + M + + Sbjct: 2 EEQIREIIEYYTKEGETISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 Y L R +Q+C C +G L+++ K + + G Sbjct: 62 KRYP--SLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C C P +MI Y +T E L EI+ A+ Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153 >gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614] Length = 540 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 19/189 (10%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + + V +++ P R + +I L + Q+ G + + +A+ + ++ + V E Sbjct: 1 MDDAALDEVRKLLGDEP--RRRDLLIEHLHKIQDAFGCLEARHLRALADEMRLSQVEVYE 58 Query: 78 IATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 +A+FY F + G V+VC + C L+ + P + Sbjct: 59 VASFYHHFDIVREGDVRPAPLTVRVCDSVACALK--GADALAAALEAGVDP------AKV 110 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 ++V C G C AP V +GK ++ + + + +G++ P ++ S Sbjct: 111 RIQKVPCIGRCAGAPAVQVGKRAIDNASEVSVRAAL-----FEGNSDPAVPDYIKLDSYR 165 Query: 194 AGGLTSLLD 202 A G +LL+ Sbjct: 166 AAGGYALLE 174 >gi|331086985|ref|ZP_08336060.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409435|gb|EGG88878.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 153 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%) Query: 23 AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + E+I Y Q ++ +L Q+ +G + A + VA + M + + Sbjct: 2 EEQIREIIEYYTKEGEMISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 Y L R +Q+C C +G L+++ K + + G Sbjct: 62 KRYP--SLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C C P +MI Y +T E L EI+ A+ Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153 >gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] Length = 646 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ V L + +ATFY F + P + Sbjct: 34 RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 92 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 VC C G +L +++ + + E C G C AP ++ Sbjct: 93 VCTDLACTAAGASRLCAAVESRLGPESG-------VKLERSPCLGLCERAPATLV 140 >gi|237667145|ref|ZP_04527129.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655493|gb|EEP53049.1| putative iron hydrogenase, gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 94 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++ ++ +Y + +I ++ Q++ ++ + +A L ++ ++ +ATFY Sbjct: 1 MEKIDSILEKY--DYNRQLLIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFY 58 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114 F L P G + +++C T C +R ++E Sbjct: 59 ENFSLKPKG-KYVIKICNGTACHVRKSIPILE 89 >gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 573 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%) Query: 13 PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72 P + V ++ SR +I L ++ G + + +A + ++ Sbjct: 21 PKGRRVQPHALAEVQALLGI--ASRQPDLLIEHLHAINDRYGQLGTPHLAALAQEMRLSQ 78 Query: 73 IRVLEIATFYTQFQLSPV---GTRA-----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 V E+ATFY F++ G A V+VC C + G L++ + Sbjct: 79 AAVYEVATFYHHFEVVREDSDGEVAAAPSMTVRVCDGLSCEMAGARDLLDRLPALLG--- 135 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 T+ C G C AP+V+ G+ +++++ A G P P Sbjct: 136 ------ATIRVIPAPCVGRCEQAPVVVAGQLPLVH---ADVDQVVAAVQAG-TVVHVPAP 185 Query: 185 QIDRISSAPAGGLTSLLDNNSKKRG 209 ID + GG L + S R Sbjct: 186 YIDLAAYRTYGGYGLLAECVSGTRA 210 >gi|255019942|ref|ZP_05292016.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] gi|254970601|gb|EET28089.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus ATCC 51756] Length = 129 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 + QE G++ A+ A+ + ++V E+ +FY P G R +++C + C Sbjct: 1 MRLLQEALGYIDDEALHYAADCTGLTPVQVEELCSFYPLVLRRPAG-RHLLRICDSVACH 59 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 L G +L+ + G S C G C AP V++ +P L Sbjct: 60 LAGAPELVRRAEAISGVRLGQVAGAGHYSILPHVCLGLCDRAPAVLVDGRAVGGFSPTAL 119 Query: 166 EEIIDAFSTG 175 E+++ + G Sbjct: 120 EQLLAEWEQG 129 >gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72] gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp. BH72] Length = 571 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 13/122 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQ 97 +I L R Q+ G + + +A + +A V E+ATFY F + P G V+ Sbjct: 41 LIEYLHRLQDAHGALYADHLAALAEAMKLAQAEVYEVATFYHHFDVVPAGETPPPLLTVR 100 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C L G +L + ++ + + + V C G C AP+ ++G++ Sbjct: 101 VCDSLTCALYGGPELAAELQGRLGAE---------VRVQRVPCVGRCDCAPVAVVGQNPV 151 Query: 158 ED 159 Sbjct: 152 MH 153 >gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672] Length = 306 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 28/152 (18%) Query: 19 SEESAIWVNEVISRYPPSRCQSA-------------------VIPLLMRAQEQEGWVSRA 59 ++E V+ ++ P S + A ++P L ++ GW+S Sbjct: 11 TDEERAAVDALLGP-PESSWEGADRCDTDLRWARGGREARDLLLPGLHAVNDRVGWISEG 69 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 A+ + L + +ATFY F L P + VC C G L + Sbjct: 70 ALNYLCRRLTVPPAEAYGVATFYAMFSLRPRPA-TVLHVCTDLACAAAGAGDLCAGVEAR 128 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + ++ E C G C AP + Sbjct: 129 LGPGSG-------VAVERSPCLGLCERAPAAL 153 >gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thiomonas intermedia K12] Length = 626 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 19/167 (11%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR + QP ++ V ++I P + +I L R +Q + + Sbjct: 27 RRGKLKGRQPE-----PQALAEVQQLIGAGP--HRRDLLIEHLHRINDQWHGLHERHLVA 79 Query: 64 VANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 +A ++++ V E+ATFY F + V+VC + C L G L++ + Sbjct: 80 LARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGASDLLQRLPQLL 139 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 + + C G C AP+ ++G+ TP+ + E Sbjct: 140 GAE---------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDAVRE 177 >gi|213401477|ref|XP_002171511.1| predicted protein [Schizosaccharomyces japonicus yFS275] gi|211999558|gb|EEB05218.1| predicted protein [Schizosaccharomyces japonicus yFS275] Length = 163 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76 F S +++ RYP Q A +PLL AQ Q+G +V +AA+ +A++ RV Sbjct: 4 FDRRSLEIARQLLRRYPKEWAQGATLPLLDLAQRQQGNFVPQAALREIADMTKSTIARVR 63 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 A+ Y +LS G+ +VC + C +G + L + + + D ++ E Sbjct: 64 ATASQYEYIRLSDSGS--PFRVCTSWMCEEKGAQALRKHAQREAK------RLDVHINIE 115 Query: 137 EVECQGACVNAPMVMIGKDTYEDLT 161 C G C +AP++ YE+++ Sbjct: 116 SASCLGGCHHAPVLWFQDRLYENMS 140 >gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32] Length = 581 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 + ++P L ++ GW+S+ A+ ++ L + +A+FY+ F L R V V Sbjct: 26 RDQLLPALHAVNDRVGWISQGALNLICETLHVPPADAYGVASFYSLFALDERPER-VVHV 84 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C C + G E + +V + + G ++W C G C AP + Sbjct: 85 CTDLACRITGAETVCDVLTEHVGAAGK---ARGGVTWLRSPCLGVCERAPAAL 134 >gi|224696914|emb|CAX51536.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 455] gi|224696917|emb|CAX51538.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 402] gi|224696926|emb|CAX51544.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 403] gi|224696929|emb|CAX51546.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 404] gi|307697997|gb|ADN86369.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum] Length = 91 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ +PVG + +C PC L G E+ E + K+ DG + +E EC GA Sbjct: 1 MYETAPVGQ-HKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59 Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 C +AP+V++ ++ E+++++++ S Sbjct: 60 CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91 >gi|114571226|ref|YP_757906.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Maricaulis maris MCS10] gi|114341688|gb|ABI66968.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10] Length = 163 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 4/143 (2%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 A+I +L Q G +S AAI +A+ L+++ VL + +FY F+ P G R + Sbjct: 23 HPDALIEVLHWLQASAGHISDAAIATIADALNLSRAEVLGVVSFYHDFRRQP-GARHTFK 81 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMIGKDT 156 +C C G E + +++ + L + V C G C P M+ + Sbjct: 82 LCRAEACQAAGAEAVAAAIEDQL--EALSTTDHPPEFELKSVYCLGNCALGPAAMLDERP 139 Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179 LT ER + + G Sbjct: 140 LGRLTAERALAALTRLDSRTGGK 162 >gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2] gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas naphthalenivorans CJ2] Length = 600 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%) Query: 22 SAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 S V +I P + +I L R + + + +A +++ V E+AT Sbjct: 40 SLEEVRALIGVRPADGHRRDLLIEHLHRLNDAYRCLHDRHLVALAREMNIPMAEVYEVAT 99 Query: 81 FYTQFQLSPVGTR-------AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 FY F++ V+VC C + G + L+ + + + Sbjct: 100 FYHHFEVVKGDANGDGQAPGLTVRVCDGLSCEMAGAQDLLARLPALLGAQD--------V 151 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 C G C AP+ ++ + T E + + Sbjct: 152 RVIAAPCLGRCEQAPVAVVHQTPVPFATLESVVQ 185 >gi|256783975|ref|ZP_05522406.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 261 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ V L + +ATFY F + P + Sbjct: 51 RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 109 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 VC C G +L +++ + + E C G C AP ++ Sbjct: 110 VCTDLACTAAGASRLCAAVESRLGPESG-------VKVERSPCLGLCERAPATLV 157 >gi|224696908|emb|CAX51532.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica HKI 454] gi|224696911|emb|CAX51534.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 512] gi|224696923|emb|CAX51542.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 513] gi|307697982|gb|ADN86359.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697985|gb|ADN86361.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697988|gb|ADN86363.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697994|gb|ADN86367.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ +PVG + +C PC L G ++ E + K+ DG + +E EC GA Sbjct: 1 MYETAPVGQ-HKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59 Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 C +AP+V++ ++ E+++++++ S Sbjct: 60 CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91 >gi|307697991|gb|ADN86365.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ PVG + +C PC L G ++ E + K+ DG + +E EC GA Sbjct: 1 MYETVPVGQ-HKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59 Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173 C +AP+V++ ++ E+++++++ S Sbjct: 60 CGDAPVVLLNNHRMCSFMSREKIDQLLEELS 90 >gi|307697976|gb|ADN86355.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] gi|307697979|gb|ADN86357.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica] Length = 91 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ +PVG + +C PC L G ++ E + K+ DG + +E EC GA Sbjct: 1 MYETAPVGQ-HKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59 Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 C +AP+V++ ++ E+++++++ S Sbjct: 60 CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91 >gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 641 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 39/182 (21%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ + L + +ATFY F + P + Sbjct: 51 RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 109 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC C G +L +++ + E C G C AP + Sbjct: 110 VCTDLACTAAGAAELCADVESRL-------TPGSGVQVERSACLGLCERAPAAL------ 156 Query: 158 EDLTPERLEEIIDAFSTGQ------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211 A G+ D RPGP+ + P G N +RG+ Sbjct: 157 -------------AIRAGETARPAFEDEARPGPEGGPGAQPPGEG------NGKGRRGRT 197 Query: 212 KK 213 + Sbjct: 198 TQ 199 >gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Acidovorax ebreus TPSY] gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax ebreus TPSY] Length = 661 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 15/201 (7%) Query: 3 VRRLAEEEF-QPSSFSFSEESAIWVNEVI-SRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 +RR A + QP + + V +I +R P + +I L ++ G + Sbjct: 22 LRRKAHLKGRQPEASAL-----AEVQTLIGARPPEGYARDRLIEHLHLINDRHGALYERH 76 Query: 61 IEVVANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117 + +A ++++ V E+A+FY F + + R ++VC C + G + L+ Sbjct: 77 LVALARLMNLPMAEVYEVASFYHHFEVLRDADGPPRLVLRVCNGLSCCMAGADALLAELP 136 Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 ++ G + + C G C AP+ ++ + T + E +D Sbjct: 137 GRLSAAGH-----GDVRVQAAPCVGRCEQAPVAVVHQCPVPRATLGAVLERVDLMPDRAQ 191 Query: 178 DTIRPGPQIDRISSAPAGGLT 198 P + P +T Sbjct: 192 AQHPQAPTAPVFEALPQTAIT 212 >gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680] gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces avermitilis MA-4680] Length = 607 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 31/155 (20%) Query: 19 SEESAIWVNEVISRYPPSRCQSA----------------------VIPLLMRAQEQEGWV 56 S+E V+ ++ P S + A ++P L ++ GW+ Sbjct: 11 SDEERAAVDALLGP-PESSWEGADRSDADLRWARGGRAARDRRDLLLPGLHAVNDRIGWI 69 Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 S A++ + L + +ATFY+ F + P + VC C G +L Sbjct: 70 SEGALDYLCRRLTVPPAEAYGVATFYSMFAVKPRPA-TVLHVCTDLACASAGAAELCAGV 128 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 ++ + E C G C AP + Sbjct: 129 EARLGPGSG-------VGVERGPCLGLCERAPAAL 156 >gi|224696920|emb|CAX51540.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum] Length = 91 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 ++ +P+G + +C PC L G E+ E + K+ DG + +E EC GA Sbjct: 1 MYETAPIGQ-HKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59 Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174 C +AP+ ++ ++ E+++++++ S Sbjct: 60 CGDAPVALLNNHRMCSFMSREKIDQLLEELSK 91 >gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit [Variovorax paradoxus EPS] gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Variovorax paradoxus EPS] Length = 595 Score = 110 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 + V ++ P + +I L R ++ + + +A +++ V E+ATF Sbjct: 38 ALEEVQALLG--PGPHRRDLLIEHLHRLNDEWQCLHDRHLVALAREMNLPMAEVFEVATF 95 Query: 82 YTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 Y F + V+VC C L G L++ + + Sbjct: 96 YHHFEVLRGDDQPAALTVRVCDGLSCELAGARDLLQRLPAMLGAD---------VRVIAA 146 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT 198 C G C AP+ +IG+ T ++ +D + G P D + A A G Sbjct: 147 PCVGRCEQAPVAVIGQAPVVRATAANVKAAVDQDARAHGL-----PADDGVFDAAAAGPV 201 Query: 199 SLLDNN 204 S+ + Sbjct: 202 SITSSP 207 >gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s] Ferredoxin Involved In The Nadp-Reducing Hydrogenase Complex Length = 85 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + P G + + VC T C ++G +K++ + ++ DG S + + C G C Sbjct: 1 MVPKG-KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCAL 59 Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171 AP+VM+G+ Y ++TP ++++I+ Sbjct: 60 APIVMVGEKVYGNVTPGQVKKILAE 84 >gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134] Length = 580 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 17/137 (12%) Query: 37 RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 R + +I L Q++ G ++ + +A L +A V E+ATFY F + H+ Sbjct: 44 RRRDLLIEHLHCIQDRYGQLAMPHLVALAQELGLAMTEVYEVATFYHHFDVVREDADGHI 103 Query: 97 --------QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 +VC C + G + LI+ + + C G C AP Sbjct: 104 APPPALTVRVCEGIACEMAGAQVLIDKLPAVLGTD---------VRVVAAPCIGRCEKAP 154 Query: 149 MVMIGKDTYEDLTPERL 165 V+ G+ + T E + Sbjct: 155 AVLAGQKPVDGATVEAV 171 >gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37] Length = 588 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 3/152 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ A + + Y + ++ +L Q + + AI+ +A L ++ ++ Sbjct: 1 MNKALATLIQAQVKVYRGD--PTYILQILRHIQFSCSHIPQQAIQQLATTLSISIPKIRA 58 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + FY P G + + + + G ++ K++ K +DG ++ Sbjct: 59 LIEFYHFLHYHPRGD-YDIYISDSIIDHMSGKNEISNYLCEKLNVKLNQPRADGRVTVSN 117 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G P +I LT +++++I+ Sbjct: 118 TSCTGMSDQGPAALINGLALTRLTRKKVDQIV 149 >gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043] gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Chromohalobacter salexigens DSM 3043] Length = 595 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 18/171 (10%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQ 97 +I L Q+ +G +S + +A +++ V E ATFY F + V+ Sbjct: 71 LIEHLHTIQDAQGHLSLVMLRALATYMNLPMAAVYETATFYAHFDVVHDDQSPPPEVTVR 130 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC + C L G E L P + C G C AP+V +G Sbjct: 131 VCDSLSCRLAGAEALKAK--LAAGVDPE------AVRVVRAPCMGRCDTAPVVEVGHHHV 182 Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLDNNSKK 207 T E + +ID G R++ A GG L D ++ + Sbjct: 183 RFATHEGVASVIDT-----GHYHPEAILWQRLADYRAEGGYALLADCHAGR 228 >gi|297190827|ref|ZP_06908225.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] gi|297150630|gb|EFH30697.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC 25486] Length = 176 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ + L + +ATFY+ F + P + + Sbjct: 53 RRDLLLPALHAVNDRVGWLSEGALDYICRRLTVPPAEAYGVATFYSMFSVRPRPAK-VLH 111 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 VC C RG L D +S + C G C AP + Sbjct: 112 VCTDLACAARGG-SLSAA---------DAVGPD--VSVQPSPCLGLCERAPAAL 153 >gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina] Length = 610 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 10/184 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 R ++ L+R Q++ +V AA+E ++ LD+ +V FY P G Sbjct: 21 GRDPRHLLQHLIRVQQRFSYVPDAAVEALSVALDVTRTQVRAAIAFYAFLHDRPRGA-FE 79 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH------RNSDGTLSWEEVECQGACVNAPM 149 ++ + G +LI + ++ L DG S C G C P Sbjct: 80 IRFSDNITDRMLGSRRLIRLLIERLGLTGLPAWGRDLVRPDGRASVGLASCTGMCDQGPA 139 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209 +++ +L +R++ I D G PG + LL N G Sbjct: 140 LLVNGQAVTNLDAQRVDRIADLVQEGIPLERWPG---EFFRVENNIRRRGLLLGNPATDG 196 Query: 210 KKKK 213 + Sbjct: 197 AAVR 200 >gi|163784146|ref|ZP_02179087.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] gi|159880590|gb|EDP74153.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1] Length = 112 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++E + ++Y + A+IP L QE + AI ++ L + + Sbjct: 6 LTKEVIEKIEYFKNKYLT--KEQAIIPSLHTIQETYRDIPDEAIRELSEYLQVPEADIEG 63 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 I +FY F+ + H+++C PC L G K +++ + Sbjct: 64 IVSFYDMFRFEKK-AKNHIRLCRNLPCHLAGSRKFLKMLEKLTGAEAGG 111 >gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 626 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 27/156 (17%) Query: 19 SEESAIWVNEVISRYPPSRCQSA-----------------------VIPLLMRAQEQEGW 55 ++E V+ ++ P S + A ++P L ++ GW Sbjct: 11 TDEERAAVDALLGP-PESAWEGADDRTDTDLRWARGGRAARERRDLLLPGLHAINDRVGW 69 Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 +S A++ + L + +ATFY F + P V VC C RG ++ Sbjct: 70 ISEGALDYLCRRLTVPPAEGYGVATFYAMFSVRPRPA-TVVHVCTDLACAARGSAEVCAG 128 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + R + W+ C G C AP + Sbjct: 129 LERDLGAAGSARAG--GVVWQPSPCLGLCERAPAAL 162 >gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B [Herminiimonas arsenicoxydans] gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans] Length = 567 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 21/205 (10%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + P + V ++ SR +I L + Q++ G ++ A + +A + Sbjct: 20 KRQAPKGRRVDPVALEEVRALLG--DESRQADLLIEHLHKIQDKFGHLASAHLAALAQEM 77 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 +A V E+A+FY F + G A V+VC C + G L+ + ++ Sbjct: 78 RLAQTEVYEVASFYHHFDIVKEGEAAPQALTVRVCDGLSCEMGGARDLLAKLPKILGKE- 136 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 + C G C AP+V++G++ T + + + G +P Sbjct: 137 --------VRVIAAPCVGRCEQAPVVVVGQNPIIQATVDSVATAV-----GSNQITQPVA 183 Query: 185 Q-IDRISSAPAGGLTSLLDNNSKKR 208 + +D + + GG L S +R Sbjct: 184 EVVDFLEYSKVGGYELLKKCISGER 208 >gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Acidovorax delafieldii 2AN] Length = 657 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 11/165 (6%) Query: 12 QPSSFSFSEESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70 QP +E + ++ P + +I L R + G + + +A +++ Sbjct: 15 QPEDAEMTEVAL-----LLGTRPAAGYRRDLLIEYLHRINDHFGVLHDRHLVALAKQMNL 69 Query: 71 AYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 V E+A+FY F++ R ++VC + C + G +L+ ++ PL Sbjct: 70 PMAEVYEVASFYHHFEIVRGEGAQAPRLVLRVCDSLSCSMAGARELLAALPERLRAMPLG 129 Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + + V C G C AP+ ++ + T + + E +++ Sbjct: 130 GGQC-DVQVQAVPCVGRCEQAPVAVVHQCPVPHATVDAVLETVNS 173 >gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118] Length = 591 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 13/171 (7%) Query: 3 VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQS-AVIPLLMRAQEQEGWVSRAAI 61 +RR A+ + + S + +I PP +S +I L + + + Sbjct: 21 LRRTAQRVSKLKGRQPDDVSLQELRALIGVPPPGGHRSDLLIEHLHLLNDHYRGLFERHL 80 Query: 62 EVVANILDMAYIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRN 118 +A+ + + V E+ATFY F++ G V+VC + C + + L+ Sbjct: 81 VALASDMKLPMAEVFEVATFYHHFEVMRDGQSPAALTVRVCDSLSCAMARSDDLLARLTG 140 Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 + ++ C G C AP V++G+ + T + E + Sbjct: 141 LLG---------ASVRVMAAPCLGRCEQAPAVLVGQRAVPNATTASVLEAV 182 >gi|119504733|ref|ZP_01626811.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium HTCC2080] gi|119459338|gb|EAW40435.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium HTCC2080] Length = 165 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 12/153 (7%) Query: 19 SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E + +++ P R V+ L Q G+V A+ VVA + ++ Sbjct: 8 TAEQIENLKGLLT--PIAEREPGPVLLCLQAVQTHYGYVPEGAVAVVAEVCNVTRADAHG 65 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGTLS 134 + ++Y+ + +P V++C C G L P +D Sbjct: 66 VFSYYSDLRKTPPPL-ISVRLCAAEACQAVGGRALAAAWGEACAADPNLAGATGTD---- 120 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 E V C G C P ++ +++ E L+ Sbjct: 121 -EPVFCLGNCALGPAALVNDQLIGNVSVEALKS 152 >gi|260588548|ref|ZP_05854461.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583] gi|260541023|gb|EEX21592.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583] Length = 158 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 5/152 (3%) Query: 23 AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + E+I Y R Q ++ +L QE EG ++ E A L + + I Sbjct: 7 KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVLSCII 66 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 Y L + +C C + +++++ R + ++DG+ Sbjct: 67 KRYP--SLKEADYAHEMVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 124 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C C +P +++ + Y +LT E++ +++ Sbjct: 125 CLKQCRTSPNMLLDGELYANLTKEKVISLLEK 156 >gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 600 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 13/152 (8%) Query: 22 SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 S V ++I P + +I L + ++ + + +A +++ V E+ATF Sbjct: 40 SVAEVRQLIGHAP--HRRDLLIEHLHKLNDEYRALHDRHLVALAKEMNLPMAEVYEVATF 97 Query: 82 YTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 Y F++ V+VC C L G + L+ + + + + Sbjct: 98 YHHFEVVRGNDPVADITVRVCDGIACELAGAQNLLSKLPSILG--------NPNIKVAAA 149 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C AP+ ++ + + +++ I Sbjct: 150 PCVGRCEQAPVAVVHQYPVIFASVDKVAAAIK 181 >gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42] gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Acidovorax sp. JS42] Length = 640 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 13/156 (8%) Query: 20 EESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + + V +++ P + +I L R + G + + +A +++ +V E+ Sbjct: 39 DAAMADVAQLLGPRPADGYRRDLLIEYLHRLNDHFGVLHDRHLVALARQMNLPMAQVYEV 98 Query: 79 ATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 A+FY F++ R V+VC + C + G +L+E ++ Q G + Sbjct: 99 ASFYHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGARELLEALPARL-QAAGQ----GDVQ 153 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 V C G C AP+ ++ + ++ +++ Sbjct: 154 VVAVPCVGRCEQAPVAVVHQCPVPH---AAVDAVLE 186 >gi|310778150|ref|YP_003966483.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] gi|309747473|gb|ADO82135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter polytropus DSM 2926] Length = 154 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 4/152 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++E + I R + + +L ++ G++ E +A+ + + + Sbjct: 3 TKEFYQNLENFIGEMEDKRNE---VQVLNFVMKEIGYIPLEVQEFIADKTGLFLVTIQNA 59 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 F+ +++ S + ++VC C +G ++E K+ + D Sbjct: 60 IDFFPRYKTS-IDNTVEIKVCTGLGCTGKGGLLILEELEKKLGIEAGETTKDKKYRLTTQ 118 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C P + IG Y ++ E LE++I Sbjct: 119 RCFGKCAKGPNLSIGGVLYNNVNIENLEKLIK 150 >gi|331082154|ref|ZP_08331281.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402948|gb|EGG82513.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium 6_1_63FAA] Length = 153 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 5/150 (3%) Query: 23 AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + E+I Y R Q ++ +L QE EG ++ E A L + + I Sbjct: 2 KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVLSCII 61 Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 Y L V +C C + +++++ R + ++DG+ Sbjct: 62 KCYP--SLKEADYAHEVVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 119 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C C +P +++ + Y +LT E++ ++ Sbjct: 120 CLKQCRTSPNMLLDGELYANLTKEKVLSLL 149 >gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666] gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Polaromonas sp. JS666] Length = 566 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 15/155 (9%) Query: 9 EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 + P + V ++ SR +I L + Q+ G +S A + +A + Sbjct: 19 KRQAPKGRRVEPSALADVQRLLGS--ESRQADLLIEHLHKIQDHFGHLSAAHLAALAQEM 76 Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 +A V E+ATFY F + G A V+VC C + G L++ + Sbjct: 77 RLAQTEVYEVATFYHHFDVVKEGEAAPAPLTVRVCDGLSCEMAGARDLLDRLPALLG--- 133 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + C G C AP ++G++ + Sbjct: 134 ------REVRVIAAPCIGRCEQAPAAVVGQNPVPN 162 >gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Isosphaera pallida ATCC 43644] Length = 571 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105 L Q++ G++ + + + R+ E+A+F+ ++L P T + +C C Sbjct: 6 LNAIQQKFGYLPEEELRAFSKRSQIPMYRLHEVASFFPHYRLKPPATGTVL-ICRDLACH 64 Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 L G +L++ + D + V C G C AP ++I T +L Sbjct: 65 LAGASRLLQTLKA----TARET--DERIEVGGVSCLGQCDRAPALLINDQVIWGQTESQL 118 Query: 166 EEI 168 + Sbjct: 119 RAL 121 >gi|118116827|ref|XP_001236209.1| PREDICTED: hypothetical protein, partial [Gallus gallus] Length = 61 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 K D + EVEC GACVNAPMV I + YEDLTP+ +E+IID G+ + Sbjct: 1 IKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPK 58 Query: 182 PGP 184 PGP Sbjct: 59 PGP 61 >gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa] Length = 107 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 + V R E + F F+ E+ + ++ YP +AV+P+L AQ Q GW+ +A Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97 Query: 61 IEVVANILDM 70 + VA +L + Sbjct: 98 MNKVAEVLQV 107 >gi|307331427|ref|ZP_07610545.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces violaceusniger Tu 4113] gi|306882926|gb|EFN13994.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces violaceusniger Tu 4113] Length = 319 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTP 103 P L ++ GW+S ++ + L + +ATFY F + P V VC Sbjct: 58 PGLHALNDRVGWISEGGLDYLCRRLTVPPAEGYGVATFYAMFAVKPRPA-TVVHVCTDLA 116 Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 C RG ++ + P G + W+ C G C AP + Sbjct: 117 CAARGSARVCAELERDLG--PAGSAGSGAV-WQPSPCLGLCERAPAAL 161 >gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1] Length = 573 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 22/199 (11%) Query: 19 SEESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 ++ V +++ P + + +I L + G + + +A +L ++ V E Sbjct: 28 DAQALSTVQALLAARPQTPLRRDLLIEHLHTLNDHFGQLRTDHLAALAQLLRLSQAEVYE 87 Query: 78 IATFYTQFQLS--------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129 +A+FY F++ P V+VC C L G L+ + + Sbjct: 88 VASFYHHFEVVQAKADGSYPEPAPLTVRVCDGIACELTGARDLLTRLPALLGTE------ 141 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 + C G C AP ++ + + TPE ++ + A T P P Sbjct: 142 ---VRVIAAPCIGRCEQAPAAVVHQCPVPNATPEAVQAAVTAGRT----KHEPAPYTTLP 194 Query: 190 SSAPAGGLTSLLDNNSKKR 208 S AGG +L S +R Sbjct: 195 SYHDAGGYRTLRQCLSGER 213 >gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Kribbella flavida DSM 17836] Length = 565 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 11/138 (7%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 ++IPLL Q + GW+ R +E +A + + +FY F +P V+VC Sbjct: 22 SLIPLLNAIQARCGWLPREELEALARQQKRPLYEIEGLVSFYPHFLTAPP-KDVTVRVCR 80 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160 C L+G E + + + E+ C G C AP + + L Sbjct: 81 DLACWLKGAEGPAAALTAQYAEAED-------VEVLEISCPGRCDMAPAATVNEKPV-RL 132 Query: 161 TPERLEEIIDAFSTGQGD 178 E + ++ + G D Sbjct: 133 --EDVPATVEQVAAGDRD 148 >gi|90569063|gb|ABD94422.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 56/74 (75%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIAGDP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|160941290|ref|ZP_02088627.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC BAA-613] gi|158435851|gb|EDP13618.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC BAA-613] Length = 160 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 8/159 (5%) Query: 19 SEESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +E E++ Y P Q A++ +L Q+ G +S +E A + V Sbjct: 6 NEARDDQTREILDYYRGLPERSSQEAIVEMLRELQDIHGCISPYMLEQAAEAAGVRDSMV 65 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 I Y + +P + +C C +G +++ + ++ + DGT+ Sbjct: 66 QAICKRYPSLKTAPY--NHEIILCTGRNCASKGSITVMDELKKRLGVGKNGISEDGTVCL 123 Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + C C AP VM+ L E I+ Sbjct: 124 KTRNCLKNCRKAPNVMVDGRLCSGLDAE---GILRELKR 159 >gi|90569075|gb|ABD94428.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 56/74 (75%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LIE+C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIEICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569071|gb|ABD94426.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI P Sbjct: 1 ADMLGMAYVRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIASDP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569061|gb|ABD94421.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] gi|90569065|gb|ABD94423.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] gi|90569081|gb|ABD94431.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/74 (74%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569077|gb|ABD94429.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti] Length = 74 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 54/74 (72%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYMRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|90569073|gb|ABD94427.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FALNEGGTLSWEEV 74 >gi|226939219|ref|YP_002794290.1| hypothetical protein LHK_00286 [Laribacter hongkongensis HLHK9] gi|226714143|gb|ACO73281.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Laribacter hongkongensis HLHK9] Length = 288 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 ++ ++ +I + A++PLL Q Q G++ AA+ +A L + + + Sbjct: 3 DDDLLATLDALIGA--NQDRRGALLPLLHAIQAQFGYIPDAAVPRLAQALRQSRADIDGV 60 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +FY F+ +P +++C C G + L + + + Sbjct: 61 ISFYRDFRRTPPRA-HTLRLCRAESCQAMGADTLAHLLDHAPGCR 104 >gi|90569067|gb|ABD94424.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] gi|90569069|gb|ABD94425.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] gi|90569079|gb|ABD94430.1| NADH dehydrogenase I chain E [Sinorhizobium medicae] Length = 74 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|126680935|gb|ABO26551.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti] Length = 74 Score = 99.4 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 55/74 (74%), Positives = 61/74 (82%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI +P Sbjct: 1 ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIMICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|126680955|gb|ABO26552.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti] Length = 74 Score = 99.0 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 54/74 (72%), Positives = 62/74 (83%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 A++L MAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI +P Sbjct: 1 ADMLGMAYIRVIEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60 Query: 125 LHRNSDGTLSWEEV 138 N GTLSWEEV Sbjct: 61 FTLNEGGTLSWEEV 74 >gi|266619596|ref|ZP_06112531.1| putative NADP-reducing hydrogenase, subunit A [Clostridium hathewayi DSM 13479] gi|288868846|gb|EFD01145.1| putative NADP-reducing hydrogenase, subunit A [Clostridium hathewayi DSM 13479] Length = 149 Score = 98.7 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 10/149 (6%) Query: 27 NEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 E++ Y R + ++ +L QE G++ +A + +L++ Y Sbjct: 8 REIVDYYSSQRDAGSQENIVEMLREVQELYGYIPSEKTRAMAEATGVKQTLLLQLIKLYP 67 Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F+ +P G + VC C +G ++ E K + G EC Sbjct: 68 SFKKAPYG--HCITVCTGARCGDKGSAEVFEAV-----LKAVEARESGAFKIVMKECLKQ 120 Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C AP +M+ D+Y + P+ + I+ + Sbjct: 121 CKTAPNLMVDSDSYGCVKPDEVASILSNY 149 >gi|325263882|ref|ZP_08130615.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5] gi|324030920|gb|EGB92202.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5] Length = 162 Score = 98.3 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 5/153 (3%) Query: 21 ESAIWVNEVISRYPP---SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 + E+ Y Q ++ +L QE G ++ E VA++ + V Sbjct: 5 DKRKRAEEIFEYYGALENRGEQDVIVAMLRELQEVYGCITAGTAERVADVAGVKGAFVRA 64 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 + Y L + VC C +G + +V + + + + DG + Sbjct: 65 LVRMYP--TLKEAAFLHEIIVCMGKTCSEKGGRDIYKVLQRVLKVRGNGISRDGKVRVRT 122 Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C C AP ++I Y +T E+L I+ Sbjct: 123 QSCLKHCGTAPNMLIDGKLYTGVTQEKLMGILK 155 >gi|331092182|ref|ZP_08341012.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401954|gb|EGG81528.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium 2_1_46FAA] Length = 157 Score = 98.3 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q ++ L Q+ G + A + I+ M + +I + Y L+ + + V Sbjct: 28 QETLVQFLRETQDIFGCIPADAKMQIGEIMGMKPSLIDKIISMYP--SLTAEKFQTEIIV 85 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C C + +K++ + + +P DG C C P +MIG Y Sbjct: 86 CSGASCSSKNAQKVLSEIQTLLQIRPGQVTKDGRYKLTAKPCMKQCKKGPNLMIGSTIYH 145 Query: 159 DLTPERLEEII 169 ++ E+L+ ++ Sbjct: 146 NIDSEKLKTLL 156 >gi|323692272|ref|ZP_08106513.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum WAL-14673] gi|323503687|gb|EGB19508.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum WAL-14673] Length = 184 Score = 97.9 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 11/163 (6%) Query: 20 EESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E + E++S Y S+ ++ ++ QE GW+S E+ A + + Sbjct: 23 ERREEELKEILSYYSSMTSPSSQENIVSMMQEIQELYGWISAEHKEMAAEAAGVKLSVID 82 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-----LHRNSDG 131 I Y L P R + C C R + L++ + ++ K +SD Sbjct: 83 CIMKLYK--SLKPAPYRHRMTFCTGKNCH-REGQNLLDTVKKELGIKGKIPASGALSSDK 139 Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E +C C AP ++ Y E +++++ + Sbjct: 140 KVLLETRDCLKQCRTAPNFLLDGKLYSSAGEEEIKKLLKKLRS 182 >gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit [Isosphaera pallida ATCC 43644] Length = 581 Score = 97.9 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 23/206 (11%) Query: 2 SVRRLAEEEFQPSSFSFSEESAIWVNEVISR--YPPSRCQSAVIPLLMRAQEQEGWVSRA 59 S RR + P ++ V + P + +I L Q+ G + Sbjct: 28 SGRR--KPPVTPKGRQVDPQAIREVQAALEEAGSGPPDQRDLLIEHLHALQDFYGILIPR 85 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEV 115 + +A++ ++ V E ATFY FQ+S RA ++VC CM++G E L+ Sbjct: 86 HLAALADLARLSLAEVYETATFYAHFQMSRSDDLAPPRATIRVCDGVVCMIQGAEALLRE 145 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175 R N+ + C G C AP M+G+ TPERL + Sbjct: 146 TRA---------NAPADVRVVPAPCMGWCDRAPAAMVGQRHISAATPERLVA-----AAV 191 Query: 176 QGDT-IRPGPQIDRISSAPAGGLTSL 200 +G T P + + GG +L Sbjct: 192 EGSTDPIPITFLSLDETRIHGGYLTL 217 >gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Magnetospirillum magnetotacticum MS-1] Length = 514 Score = 96.3 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 31/197 (15%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPS-RCQSAVIPLLMRAQEQEGWVSRAAIE 62 RRL P E V ++ P R + +I L Q++ G + R + Sbjct: 12 RRLGPPAASP-------ECVAEVEALL---PDDFRRRDLLIENLHALQDRFGGLFRRHLT 61 Query: 63 VVANILDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119 +A + ++ V E+A+FY F+L A ++ C C +R E++ Sbjct: 62 ALAEEMRLSPAEVQEVASFYAHFRLLDDDEAAPGAVLRRCTGPACAMRMPERV------- 114 Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +G + EE C G C +AP + GK D ++ +G+ Sbjct: 115 ---------PEGVV-VEEAPCMGLCDHAPASLPGKGVVSDAILHEDYPVLARCRSGELPR 164 Query: 180 IRPGPQIDRISSAPAGG 196 +++R GG Sbjct: 165 DEVLAELERAGLRGMGG 181 >gi|294775627|ref|ZP_06741136.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450569|gb|EFG19060.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 80 Score = 96.0 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + TFYT F + P G + + VC T C LRG EKL E + + + DG Sbjct: 2 YGMVTFYTFFAMIPKG-KHPISVCMGTVCRLRGSEKLPEEFKRILGIEAGETTPDGKFFP 60 Query: 136 EEVECQGACVNAPMVMI 152 + + C GA P++MI Sbjct: 61 DCLWCVGAYGLLPVIMI 77 >gi|167761209|ref|ZP_02433336.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704] gi|167660875|gb|EDS05005.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704] Length = 155 Score = 95.6 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 5/153 (3%) Query: 24 IWVNEVISRYPPSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + E+ Y S +I +L R QE G+VS+ E VA + + V I Sbjct: 4 AILQELYDYYKEDHSLSQSELIIAMLTRIQETVGYVSKDVQEEVARLTGVNRGYVAAIIK 63 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 L R ++VC + C RG L++ + + KP DG C Sbjct: 64 --NLPHLHAQAFRHEIRVCISDRCKARGGSDLLKKLQKLLKIKPGQVTKDGVFLLNTEYC 121 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C++ P + I YE++ +L ++++ Sbjct: 122 MHNCMHGPNIKIDGRIYENVQISQLPQLLEKLR 154 >gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22] gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei 87.22] Length = 610 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 8/114 (7%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + ++P L ++ GW+S A++ + L + +ATFY F + P + Sbjct: 54 RRDLLLPGLHALNDRIGWISGGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 112 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 VC C G L ++ +S E C G C AP + Sbjct: 113 VCTDLACAAAGAAGLCAGIEARLGPGSG-------VSVERSPCLGLCERAPAAL 159 >gi|169825064|ref|YP_001692675.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC 29328] gi|167831869|dbj|BAG08785.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC 29328] Length = 159 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++E + + + A + + Q+ G VS + + +A D+ + I F Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFDIDEKYIKTIIKFI 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + S V + C C G ++++ + ++ ++DG + C Sbjct: 71 PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C + P +MI Y + E+ +E+++ Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159 >gi|167816878|ref|ZP_02448558.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 91] Length = 92 Score = 94.0 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100 +++ +L Q+ G+V A +E +A L+++ V + T+Y F+ +P +++C Sbjct: 21 SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79 Query: 101 TTPCMLRGCEKL 112 C G E L Sbjct: 80 AEACRSMGGEAL 91 >gi|302379485|ref|ZP_07267972.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|303234257|ref|ZP_07320902.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302312830|gb|EFK94824.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302494621|gb|EFL54382.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 159 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++E + + + A + + Q+ G VS + + +A ++ + I F Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKFI 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + S V + C C G ++++ + ++ ++DG + C Sbjct: 71 PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C + P +MI Y + E+ +E+++ Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159 >gi|154503789|ref|ZP_02040849.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149] gi|153795889|gb|EDN78309.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149] Length = 158 Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98 Q+ ++ L Q+ G + A E +A+I+ + + + Y LS + + + Sbjct: 30 QAILVEFLRETQDIFGCIPNDAKEQIASIMQVKPALIDTLIRLYP--SLSSQTYQKEIIL 87 Query: 99 CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158 C + C + L+ K+ + SDGT +C C P + +G Y Sbjct: 88 CTGSTCSSKQSALLLRKLEQKLQIRQGEVTSDGTYLLRTQKCFKQCGQGPNMKVGDKMYH 147 Query: 159 DLTPERLEEI 168 +T E ++++ Sbjct: 148 HVTAELIDQL 157 >gi|254883634|ref|ZP_05256344.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA] gi|319642295|ref|ZP_07996954.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A] gi|254836427|gb|EET16736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA] gi|317386151|gb|EFV67071.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A] Length = 80 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + T+YT F + P G + + VC T C +RG EKL E + + + DG Sbjct: 2 YGMVTYYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFP 60 Query: 136 EEVECQGACVNAPMVMI 152 + + C GA P++MI Sbjct: 61 DCLWCVGAYGLPPVIMI 77 >gi|297586998|ref|ZP_06945643.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC 53516] gi|297574979|gb|EFH93698.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC 53516] Length = 159 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 3/151 (1%) Query: 23 AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 ++E + + + A + + Q+ G VS + + +A ++ + I F Sbjct: 12 KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKFI 70 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + S V + C C G ++++ + ++ ++DG + C Sbjct: 71 PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128 Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C + P +MI Y + E+ +E+++ Sbjct: 129 KCKDGPNIMINGKLYHHMDAEKTKEVLEKIK 159 >gi|150002992|ref|YP_001297736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC 8482] gi|149931416|gb|ABR38114.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC 8482] Length = 77 Score = 91.7 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFYT F + P G + + VC T C +RG EKL E + + + DG + + Sbjct: 2 VTFYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDCL 60 Query: 139 ECQGACVNAPMVMI 152 C GA P++MI Sbjct: 61 WCVGAYGLPPVIMI 74 >gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246] Length = 686 Score = 90.9 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 46 LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV-GTRAHVQVCGTTPC 104 L Q + G++ + +A+ +++ R+ E+++F+ F+L ++VC C Sbjct: 6 LRDIQNRFGFLPDKELRALAHEINVPLYRIEEVSSFFPAFKLERTNPPEIEMRVCRDLTC 65 Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVECQGACVNAPMVMIGKD------- 155 RG L++ R + + ++ E V C G C AP V + K Sbjct: 66 HHRGAAALLDE-RTGLPVLAAELSEATGKSVCVEGVSCLGRCDRAPAVWVEKRPMPEHVH 124 Query: 156 --TYEDLTPERLEEIIDAFSTGQGD-------TIRPGPQIDRISSAPAG 195 Y E LE ++ + + T P +R + P G Sbjct: 125 AWVYAGRDGEFLEGVLRDLAADRDPPEPDTDATYEPHTNTNRGYAIPKG 173 >gi|225569331|ref|ZP_03778356.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM 15053] gi|225162130|gb|EEG74749.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM 15053] Length = 154 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 11/153 (7%) Query: 27 NEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83 N++ Y + VI +L Q EG + + A E A + + V + Sbjct: 7 NDIFDYYREEKTMTQSELVIAVLTELQAIEGCIPKEAREAAAELAGVNPGYVSAVIK--- 63 Query: 84 QFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 +L + R ++VC + C +G + +++ + + +P D V C Sbjct: 64 --RLPHLHEQSFRHEIKVCISDRCKNKGGQDVLKEIQRILKIRPGQVTRDKRFLLTTVYC 121 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C P + I ++++T + I+ +S Sbjct: 122 MHYCTKGPNIQIDGRLFQNVTAAEVPSILKKYS 154 >gi|218672651|ref|ZP_03522320.1| NADH dehydrogenase subunit E [Rhizobium etli GR56] Length = 62 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 47/60 (78%), Positives = 52/60 (86%) Query: 67 ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KIH P Sbjct: 1 MLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKIHAHPFE 60 >gi|269119260|ref|YP_003307437.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein [Sebaldella termitidis ATCC 33386] gi|268613138|gb|ACZ07506.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein [Sebaldella termitidis ATCC 33386] Length = 150 Score = 89.0 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 57/149 (38%), Gaps = 6/149 (4%) Query: 26 VNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84 + ++I+ Y + + + +L Q Q G + + +A + + V E+ + Sbjct: 4 IKDLINNYLLVKKDDTDLFDVLHFVQSQIGCIPEDIQKFIAARMCLELSEVHEVIEISSS 63 Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 FQ V VC + C ++G +++ + ++ D ++ C AC Sbjct: 64 FQEKKQ---ISVTVCSGSGCTMKGSMEILGIISKELGVNLND--EDKSVFLTVKNCFKAC 118 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + + + + ++T L +++ Sbjct: 119 SYGVNIEVNGELFHNVTVSTLGRVLEKIK 147 >gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24] Length = 566 Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 4/106 (3%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 VA L + V A+F+ F +P G R V+VC C + + Sbjct: 53 VARTLGLPAAAVEGPASFFADFS-APRGARH-VRVCSAAACFAATGGAHVPEVEAALGVP 110 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 ++ DGT+S + V C G C P ++G + P+ +++ Sbjct: 111 SGSKSPDGTVSLQAVRCLGYCFAGPAALVGDEACA--GPDLAAQLL 154 >gi|167769022|ref|ZP_02441075.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM 17241] gi|167668662|gb|EDS12792.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM 17241] Length = 157 Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 5/154 (3%) Query: 22 SAIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + E+++ Y R Q +I LL Q G V AA A + A V + Sbjct: 5 EQEQLQELLTYYKSIRETGGQELLIALLREIQSLCGCVPPAAQAAAAAAMKTAPAAVAAL 64 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 +P + VC C +G +++ + K DG + Sbjct: 65 VKRLPGLNAAPYA--HRIVVCTGPRCAAKGGAAVLKAFETALGIKAGQVTDDGRFLLDTQ 122 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C C +AP I D ++ + P+ + EI+ + Sbjct: 123 NCLKQCGSAPNTRIDNDLFKQVAPDLVPEILAQY 156 >gi|60687924|gb|AAX30295.1| SJCHGC02806 protein [Schistosoma japonicum] Length = 82 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 26/50 (52%) Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 G E ++ + + +P D + EVEC GACVNAPM+ I D Y Sbjct: 6 GSEAILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYY 55 >gi|218260393|ref|ZP_03475732.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii DSM 18315] gi|218224547|gb|EEC97197.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii DSM 18315] Length = 81 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Query: 23 AIWVNEVIS---RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 I +NE+++ + +I +L AQ G++ R E++A+ L + RV + Sbjct: 10 QIKINELLAVCDEHNND--PGELINILHAAQGIFGYLPREVQEIIASRLHIPVSRVYGVV 67 Query: 80 TFYTQFQLSPVGTR 93 TFY+ F ++P G Sbjct: 68 TFYSFFTMTPKGKY 81 >gi|237738151|ref|ZP_04568632.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] gi|229420031|gb|EEO35078.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817] Length = 151 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 4/151 (2%) Query: 19 SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 +E + E I + + +L E+ + + + +A+ + I + Sbjct: 3 DKEFYKELEEFIENLRDKKDD---VKILNFVIEKIDSIPKEVQKFIADKTGLMEISIENT 59 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 FY +F+ + V VC C G +++ + + DG + Sbjct: 60 INFYPKFRNRVSNIK-EVAVCTGMSCGPAGGQEIYNELVKILEVDSNGLSKDGKIMLSNK 118 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 C G C P V I + Y ++ + ++ + Sbjct: 119 RCFGRCAKGPNVSIDGEIYSLMSLQDVKRKL 149 >gi|289810294|ref|ZP_06540923.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 73 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 AI +A++L + V +ATFY+Q PVG R ++ C + C + G + + Sbjct: 2 PDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAL 60 Query: 117 RNKIHQKPLHRNSD 130 +D Sbjct: 61 EKNT---QHQTGAD 71 >gi|210612660|ref|ZP_03289408.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787] gi|210151462|gb|EEA82470.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787] Length = 158 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 5/138 (3%) Query: 24 IWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + E+ S Y P Q V+ LL Q+ G++S E V + ++ + + Sbjct: 8 DEIEEIFSYYSQQPDKGSQEMVVALLRELQDAHGFISLELKERVEQVTGVSPNYLKCLIR 67 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 Y L T + C C + ++ + ++ + + DG C Sbjct: 68 MYP--TLKEENTVHEIIACTGERCGKKEGGAILNALKRELRIQKNGVSIDGKFKLRTQNC 125 Query: 141 QGACVNAPMVMIGKDTYE 158 C AP ++I Y Sbjct: 126 LKKCGTAPNIIIDDVVYS 143 >gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 559 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 8/156 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + V+ L E G ++ A + VA+ L V A+FY +P G R Sbjct: 13 GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYADL-TAPQGLRH- 70 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+VC T C + + + + + R+ +G +S + C G C +P + G Sbjct: 71 VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 129 Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 TP + + + + P R +S Sbjct: 130 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 160 >gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea NRRL 2338] Length = 560 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 8/156 (5%) Query: 36 SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + V+ L E G ++ A + VA+ L V A+FY +P G R Sbjct: 14 GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYADL-TAPQGLRH- 71 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+VC T C + + + + + R+ +G +S + C G C +P + G Sbjct: 72 VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 130 Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 TP + + + + P R +S Sbjct: 131 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 161 >gi|89070604|ref|ZP_01157888.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] gi|89043821|gb|EAR50022.1| formate dehydrogenase, beta subunit [Oceanicola granulosus HTCC2516] Length = 98 Score = 86.3 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 34 PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP---- 89 P R + +I L Q++ G++S A + +A L + V E+A+FY F L Sbjct: 4 PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQAEVWEVASFYAHFDLVKEDEL 63 Query: 90 VGTRAHVQVCGTTPC 104 ++VC + C Sbjct: 64 PPPALTIRVCESLSC 78 >gi|154496302|ref|ZP_02034998.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC 29799] gi|150274385|gb|EDN01462.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC 29799] Length = 196 Score = 83.6 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 39 QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 Q+ ++ LL Q G + + A+E +A L + + Y + V R + Sbjct: 67 QNELVQLLRETQALYGGVIPQQALEEIAQALGFRASFLPAVLKRYPSIKTESV--RHSLT 124 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157 VC C R +L++ + +P + G + C C P V Y Sbjct: 125 VCQGPSCGRR--RELLDFLSREYGVEPGGVAAAG-FRLQTGGCMKNCGKGPCVRWDGTVY 181 Query: 158 EDLTPERLEEIIDA 171 +TPE L +I+ Sbjct: 182 TGMTPESLRALIEK 195 >gi|167746358|ref|ZP_02418485.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662] gi|167654351|gb|EDR98480.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662] Length = 150 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 11/153 (7%) Query: 25 WVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81 V+E++ Y + ++ L QE G + +A E A L + + Sbjct: 4 RVDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKK 63 Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--E 139 Y F V + V+VC C +++ + D +S + V Sbjct: 64 YPGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAA----GEEKERDQGISIKIVKGR 117 Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C C P ++I + +TPE+ +I Sbjct: 118 CTRRCGKGPNLIINGVLHHHMTPEQAAGLIRRL 150 >gi|253581891|ref|ZP_04859115.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725] gi|251836240|gb|EES64777.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725] Length = 157 Score = 82.1 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 5/157 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 ++E I + E I+ + + +L E+ + + +A + I Sbjct: 3 KMEVNKEFYIELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIAEKTGLLEIS 59 Query: 75 VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + FY +F+ G + V VC C + G + E + + DG + Sbjct: 60 IENTINFYPKFRNKVSGKQLKEVSVCVGMTCGVYG-KGFYEELAEILEIDEKGISKDGKI 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C G C P V I + Y +T L+ ++ Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMTMAELKRRLE 155 >gi|300860741|ref|ZP_07106828.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11] gi|295112906|emb|CBL31543.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Enterococcus sp. 7L76] gi|300849780|gb|EFK77530.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11] gi|315145700|gb|EFT89716.1| NAD-dependent formate dehydrogenase, gamma subunit family protein [Enterococcus faecalis TX2141] gi|315160213|gb|EFU04230.1| NAD-dependent formate dehydrogenase, gamma subunit family protein [Enterococcus faecalis TX0645] Length = 107 Score = 81.7 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 42 VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 ++ +L+ Q +EG++ + ++VA L + RV EI +FY + P + +++C Sbjct: 23 ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81 Query: 100 GTTPCMLRGCEKLIEVCRNKIHQ 122 +TPC G + EV + Sbjct: 82 NSTPCHYTGGAMVAEVLETILEV 104 >gi|225407903|ref|ZP_03761092.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme DSM 15981] gi|225042582|gb|EEG52828.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme DSM 15981] Length = 158 Score = 81.7 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%) Query: 19 SEESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 + ++ + + E++ Y +++ V+ +L Q+ +G++S + A + V Sbjct: 6 TRDTEVQIREILDYYGGREDRASQETVVEMLRELQDAQGFLSPGILAAAAETAGVKESTV 65 Query: 76 LEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLI--EVCRNKIHQKPLHRNS 129 I + P R + VC C G + + R ++ P ++ Sbjct: 66 RAIL------KRCPSLKTAPYRHEIVVCLGKNC---GGRNIEVLQELRRRLKTGPDGISA 116 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165 DG + C +C AP VM+ ++ E + Sbjct: 117 DGRVKVSTRSCLKSCRTAPNVMVDGKICSGVSAEGI 152 >gi|317063161|ref|ZP_07927646.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313688837|gb|EFS25672.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 157 Score = 81.7 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 6/151 (3%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 ++E + E I+ + + +L E+ + + +A+ + I Sbjct: 3 KMEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEIS 59 Query: 75 VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + FY +F+ G + V +C C + G + + + + DG + Sbjct: 60 IENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYG-KGFYDELAEILEVDENGVSKDGKI 118 Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLT-PE 163 C G C P V I + Y +T PE Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMTMPE 149 >gi|257468913|ref|ZP_05633007.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Fusobacterium ulcerans ATCC 49185] Length = 154 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 6/150 (4%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 ++E + E I+ + + +L E+ + + +A+ + I + Sbjct: 1 MEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEISI 57 Query: 76 LEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 FY +F+ G + V +C C + G + + + + DG + Sbjct: 58 ENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYG-KGFYDELAEILEVDENGVSKDGKIL 116 Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLT-PE 163 C G C P V I + Y +T PE Sbjct: 117 LTTKRCFGRCNKGPNVSIDGEIYSMMTMPE 146 >gi|225572091|ref|ZP_03780955.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM 10507] gi|225040425|gb|EEG50671.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM 10507] Length = 155 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 5/155 (3%) Query: 22 SAIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78 + E+ Y Q +++ + QE G++ E +A + + I Sbjct: 3 EQETIEEIFEYYKGRDDCASQESLVDMFREIQEVYGYIPAELKERMAREFCVKETFLNCI 62 Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 Y L V VC C + +L+ R + + + DG + Sbjct: 63 IQRYP--SLKEQKITHTVIVCSGERCRNKNAAELLAYIRKSLKIQKNGSSEDGKVCLRTQ 120 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 C C +P + + + +T E+ ++I+ ++S Sbjct: 121 NCLRHCRTSPNISVDGEIQTGMTCEKWKQILQSWS 155 >gi|317470766|ref|ZP_07930150.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA] gi|316901755|gb|EFV23685.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA] Length = 150 Score = 81.3 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 11/152 (7%) Query: 26 VNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82 V+E++ Y + ++ L QE G + +A E A L + + Y Sbjct: 5 VDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKKY 64 Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--EC 140 F V + V+VC C +++ + D +S + V C Sbjct: 65 PGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAA----GEEKERDQGISIKIVKGRC 118 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172 C P ++I + +TP++ +I Sbjct: 119 TRRCGKGPNLIINGVLHHHMTPDQAAGLIRRL 150 >gi|31747591|gb|AAO38265.1| probable Fe-hydrogenase gamma subunit [Leptospirillum ferrooxidans] Length = 73 Score = 81.3 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 L++ + ++ +P D + E V C G+C APM M+ Y L+P+++ +I Sbjct: 2 LVDKVKEELKIEPGENTEDMLFTLEPVSCLGSCALAPMAMVTDTAYGKLSPDKMLGLIKD 61 Query: 172 FSTGQGDTIRPG 183 + P Sbjct: 62 LESEHLSASEPA 73 >gi|325001506|ref|ZP_08122618.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1] Length = 118 Score = 81.3 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 48 RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104 + EGW+S A+ VA L + V +ATFY F + P R V VC C Sbjct: 61 AVHDAEGWLSEGALNHVARTLQVPPAEVYGVATFYAMFSVEPRAPR-VVHVCDDVAC 116 >gi|153816474|ref|ZP_01969142.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756] gi|317500205|ref|ZP_07958436.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium 8_1_57FAA] gi|145846216|gb|EDK23134.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756] gi|316898376|gb|EFV20416.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium 8_1_57FAA] Length = 160 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 5/150 (3%) Query: 24 IWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + E+ + Y R +S+ VI LL QE EG ++ V ++ + + Sbjct: 7 EQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLNCLIK 66 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 Y + + C C + +++ R ++ K +SDG C Sbjct: 67 MYP--SIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELRTRNC 124 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C +P + I + Y + ++ +++ Sbjct: 125 LKQCRTSPNMYIDRKLYSGEQLKDIKTLLN 154 >gi|331087567|ref|ZP_08336498.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium 3_1_46FAA] gi|330400707|gb|EGG80311.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium 3_1_46FAA] Length = 156 Score = 80.9 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 5/150 (3%) Query: 24 IWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + E+ + Y R +S+ VI LL QE EG ++ V ++ + + Sbjct: 3 EQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLNCLIK 62 Query: 81 FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 Y + + C C + +++ R ++ K +SDG C Sbjct: 63 MYP--SIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELRTRNC 120 Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170 C +P + I + Y + ++ +++ Sbjct: 121 LKQCRTSPNMYIDRKLYSGEQLKDIKTLLN 150 >gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1] Length = 503 Score = 79.8 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 20/113 (17%) Query: 38 CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 + V+ LL E+ G + V+ + V +A+FYT G + + Sbjct: 7 KRKVVLQLL----EEHGGMRPGVARKVSEETGVPEADVYGVASFYTLLSR--PGAKT--R 58 Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 VC C++ G E++I + + E V C G C AP Sbjct: 59 VCQGLTCVMAGAEQVIAELKAR-----GEE-------VEAVSCLGQCDRAPAA 99 >gi|307069591|ref|YP_003878068.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus Zinderia insecticola CARI] gi|306482851|gb|ADM89722.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus Zinderia insecticola CARI] Length = 154 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 60/140 (42%), Gaps = 5/140 (3%) Query: 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 ++ + + ++P +S ++ +L +++ +++ ++ ++ +L +++I+V Sbjct: 1 MFLNKYIYKNIKKEFKKFPLENKRSIILYILRIFEKKYNFINNKILKKISKVLKISFIQV 60 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 EI+ FY L + + +C + C L K+I + +I +K Sbjct: 61 KEISNFYKMCNLKKK-VKYKIFICNSISCYLNNSLKVINFLKKEIFKKKKK----KLFYI 115 Query: 136 EEVECQGACVNAPMVMIGKD 155 + C G C +P +I Sbjct: 116 HKSSCMGLCSFSPFFLINNK 135 >gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta moutnovskia 768-28] Length = 516 Score = 75.5 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 19/107 (17%) Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 S + +A ++ V ++TFY + VQVC PC+L+G ++ Sbjct: 21 SDDELRKIAEKHNLPLSTVKMLSTFYFH-------DYSEVQVCMGLPCILKGAREVTREL 73 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPE 163 + K C G C P V +G Y + + Sbjct: 74 ERR-GIKY-----------SVTYCLGYCDKGPAVRMGDRYYTFVNGD 108 >gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca] gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 537 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + C +T C ++ + + + + L +D + V C G C PMV + Sbjct: 21 RIHCCTSTGCQASESLEVKKAMEDALKESGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 YE +TPE II+A G+ ++ P Sbjct: 77 NGIHYEKVTPEDAPSIIEALKGGEAKPVQGDPN 109 >gi|255281710|ref|ZP_05346265.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267777|gb|EET60982.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 148 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 16/135 (11%) Query: 45 LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCG 100 +L QE G++S + A L + I T + P + V VC Sbjct: 1 MLREIQEFYGFISPEMKQHAAEALGVK----EGILT--CLIRRFPSLKEADYQHTVTVCT 54 Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVECQGACVNAPMVMIGK 154 C + K+++ + ++ + +G + C C AP +MI Sbjct: 55 GERCGRKQGMKILQEVKRELQIDEEYSSRQPMLSKNGKCLLKTQNCLKQCRTAPNLMIDG 114 Query: 155 DTYEDLTPERLEEII 169 Y + E + ++ Sbjct: 115 KVYHQIKLEDVHNLL 129 >gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328] Length = 537 Score = 72.1 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + C +T C ++ + + + L +D + V C G C PMV + Sbjct: 21 RIHCCTSTGCQASESLEVKKAMEDALKGSGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 YE +TPE II+A G+ ++ P Sbjct: 77 NGIHYEKVTPEDAPSIIEALQGGEAKPVQGDPD 109 >gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341] Length = 531 Score = 71.3 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 ++ C C ++ + + + + L +D + V C G C PMV + Sbjct: 21 RIRCCTAAGCQASESLEVKKAMEDALKESGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 YE +TPE II+A G+ ++ P Sbjct: 77 NGIHYEKVTPEDAPSIIEALKGGEAKPVQGDPN 109 >gi|330945473|gb|EGH47028.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. pisi str. 1704B] Length = 85 Score = 70.9 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 69 DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122 D+ V +ATFY+Q PVG R ++VC + C + G E +++ ++ + Sbjct: 6 DIPASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGI 58 >gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO] gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO] Length = 653 Score = 70.1 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD--GTLSWEEVECQGACVN 146 P + V+VC T C ++G L+ + + R D + C C Sbjct: 569 PKEEKTVVRVCLGTSCYMKGSYNLLSQLIDYV------RTEDLSDEVEITGTFCLEHCGK 622 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174 +P VM+ + T E+++E+++ ++ Sbjct: 623 SPNVMVNDKLISEATFEKIKEVLEKYAK 650 >gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 569 Score = 69.0 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + HV VCG T C GC+ ++ + I + L + C G C P++ + Sbjct: 30 KYHVLVCGGTGCHSVGCQNTLQALQKAIDSQGLQDT----VKLVVTGCMGTCEMGPVITV 85 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176 Y + PE EE++ + G+ Sbjct: 86 FPDGYYYCRVQPEDAEELVTSHLKEGK 112 >gi|226323628|ref|ZP_03799146.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758] gi|225207812|gb|EEG90166.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758] Length = 64 Score = 68.6 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 +E+I+ + +R + ++IP++ QE+ ++ + VA + + + Sbjct: 2 LDASYYQKTDEIIAMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKQIGITEAKAYS 59 Query: 78 IATF 81 +A+F Sbjct: 60 VASF 63 >gi|220931056|ref|YP_002507964.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168] gi|219992366|gb|ACL68969.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168] Length = 80 Score = 68.6 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 + V+VC T C L G +I+ +N + K + + V C +C P V Sbjct: 3 EKITVEVCVGTSCHLMGSPAIIDYLKNLPDNIKD-------KIEIKHVSCMNSCDRGPRV 55 Query: 151 MIGKDTYEDLTPERLEEII 169 M+ + TPER++E I Sbjct: 56 MVNDTVIYNATPERVKEAI 74 >gi|254416932|ref|ZP_05030680.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC 7420] gi|196176296|gb|EDX71312.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 67.8 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 SP T+A V VC + C RG K+ +V N + RN D ++ ++ C C Sbjct: 104 SPQKTKASVMVCKKSSCRKRGAAKVHQVMNNTLR----DRNLDDQVAIKDTGCMKQCKKG 159 Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 P +VM K Y + PE + ++D G ++P + + S+ GG Sbjct: 160 PCMVVMPDKARYNKVAPEDVPTLVDKHF---GSKLKPEANVSQRSTVRCGG 207 >gi|239626889|ref|ZP_04669920.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517035|gb|EEQ56901.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 155 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 19 SEESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75 +E++ V E++ Y P Q ++ +L Q+ GW+ + +E A + + Sbjct: 24 NEKTDREVREILDYYKELPERGSQEVIVSMLRELQDVCGWIGPSVLEEAAQTAGVKESLI 83 Query: 76 LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 I Y L + VC C R KL++ R ++ + DG + Sbjct: 84 EIIMKRYP--SLKKSPYVHEITVCTGQNCASRDNLKLLQELRQRLKIGGDGISQDGRIRV 141 Query: 136 EEV 138 +++ Sbjct: 142 KKI 144 >gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 541 Score = 67.8 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++ VC T C+ G E ++ ++++ L + ++ C G C P+V+I Sbjct: 4 KHNIIVCQGTGCISGGSEAILSALQDEVKNNNLEDT----VLVKQTGCHGFCQRGPLVVI 59 Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181 + Y +TPE + EI + G R Sbjct: 60 EPEELFYSHVTPEDIPEIAQSLKDGGKPVER 90 >gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1] Length = 538 Score = 67.5 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC +T C+ ++++ ++ Q+ L + ++V C G C P+V I Sbjct: 21 RYRIMVCSSTGCLSSRSDEILAALEAEVKQRGLE----NEVLVKKVGCLGLCAAGPIVSI 76 Query: 153 --GKDTYEDLTPERLEEIIDAF 172 Y+++TPE + I+D Sbjct: 77 QPDGILYKEMTPEDVPAILDRL 98 >gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 467 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 18/107 (16%) Query: 68 LDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124 + ++ V E A+FY F+L A ++ C C +R + + P Sbjct: 1 MRLSPAEVQETASFYAHFRLLDDHEAAPAAVLRRCTGPACSMRPLD---------LGALP 51 Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 DG + E+V C G C +AP+ + GK ++ + Sbjct: 52 -----DG-VMVEDVPCTGLCDHAPVALAGKVPVRRADAAKVARALAE 92 >gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 597 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C+ G KL E + ++ ++ L D + + C G C P++++ Sbjct: 5 RSHVLVCGGTGCVSSGSAKLQEALQKELGKQGL----DKEILLVQTGCHGMCEAGPIMVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + PE EI++ Sbjct: 61 YPEGTFYTHVKPEDAAEIVEE 81 >gi|237668838|ref|ZP_04528822.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657186|gb|EEP54742.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 60 Score = 66.7 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 22/43 (51%) Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E V C GAC AP+ + + Y ++T +++ ++D Sbjct: 1 MFTVETVSCLGACGLAPVCTVNDEVYPNMTKAKVKSLVDDIRK 43 >gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 176 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + VCG T C+ GC+++++ + ++ L D E C G C P+V+I Sbjct: 22 KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77 Query: 153 --GKDTYEDLTPERLEEIID-AFSTGQ 176 K Y ++ E ++E+++ G+ Sbjct: 78 YPEKTFYCNVQVEDIKELVERQLINGE 104 >gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 613 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + VCG T C+ GC+++++ + ++ L D E C G C P+V+I Sbjct: 22 KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77 Query: 153 --GKDTYEDLTPERLEEIID-AFSTGQ 176 K Y ++ E ++E+++ G+ Sbjct: 78 YPEKTFYCNVQVEDIKELVERQLINGE 104 >gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta smaragdinae DSM 11293] Length = 1040 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++VC C+ G +++E + + D S ++ C G C P+VM Sbjct: 24 KRHLIRVCAGGGCLASGSIEVMEALESNLK----ELAVDA--SVKKTGCLGPCARGPVVM 77 Query: 152 IGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRP 182 I + YE + PE EI + + G+ T+ P Sbjct: 78 IEPEGLFYEGVHPEDCREICETLYKAGKNGTVDP 111 >gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit [uncultured archaeon GZfos26D6] Length = 654 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++ +C T C G + + + ++ + D + C G C P+++I Sbjct: 25 KPYITICSGTACHATGSDAVAAAIQAEL--EKQGLTDD--VGVRRTGCHGFCERGPIIVI 80 Query: 153 --GKDTYEDLTPERLEEIIDA 171 G+ Y ++TPE + EII Sbjct: 81 YPGELCYLNVTPEDVPEIIAK 101 >gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain, NADH-quinone oxidoreductase chain F related [uncultured archaeon] Length = 658 Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++ +C T C G + + + ++ + D + C G C P+++I Sbjct: 25 KPYITICSGTACHATGSDAVAAAIQAEL--EKQGLTDD--VGVRRTGCHGFCERGPIIVI 80 Query: 153 --GKDTYEDLTPERLEEIIDA 171 G+ +Y ++TPE + EII Sbjct: 81 YPGELSYLNVTPEDVPEIIAK 101 >gi|239618157|ref|YP_002941479.1| hypothetical protein Kole_1790 [Kosmotoga olearia TBF 19.5.1] gi|239506988|gb|ACR80475.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1] Length = 83 Score = 64.4 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 ++VC + C ++G + + + + +K L DG +S + C G C +V + Sbjct: 3 IKVCMGSACHIKGSPNIAKKLQVLLKEKGL----DGKVSLKGSFCMGPCNKGVVVSVDGK 58 Query: 156 TYEDLTPERLEEII--DAFSTGQ 176 + ++ + +EE + G+ Sbjct: 59 VFYHISEDNVEEFFFKEILKRGE 81 >gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Coprococcus catus GD/7] Length = 594 Score = 64.4 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G E LI + + ++ + L ++ + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSETLISLLQEELKKNGLE----NEVAIVKTGCHGLCAQGPVMVI 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179 Y + PE + EI+ + G+ T Sbjct: 59 YPDATFYSMVKPEDIPEIVSEHLLKGRVVT 88 >gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] Length = 597 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VC T C G E +++ + + + G + C G C P ++I Sbjct: 5 RAHVLVCRGTGCTASGSESVMDAFEKE--IEKHGLS--GEVKVLLTGCLGLCELGPNIII 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E + EI++ Sbjct: 61 YPEGTYYCRVKAEDVPEIVEE 81 >gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8] Length = 626 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140 + VC T C +G K+ ++ ++ D ++ C Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78 Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171 G C + P+V M + Y ++ PE + EI+D Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR 111 >gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 626 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140 + VC T C +G K+ ++ ++ D ++ C Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78 Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171 G C + P+V M + Y ++ PE + EI+D Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR 111 >gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 569 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + HV VCG T C+ GC+ ++ + I L + C G C P++ + Sbjct: 30 KYHVLVCGGTGCISIGCQNTLQAMQKAIEDHGLQET----VKLVVTGCMGTCEMGPVITV 85 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176 Y + PE +EEI+ + G+ Sbjct: 86 FPEGYYYCRVKPEDVEEIVTSHLKEGK 112 >gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 626 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140 + VC T C +G K+ ++ ++ D ++ C Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78 Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171 G C + P+V M + Y ++ PE + EI+D Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR 111 >gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 626 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140 + VC T C +G K+ ++ ++ D ++ C Sbjct: 19 REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78 Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171 G C + P+V M + Y ++ PE + EI+D Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR 111 >gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] Length = 659 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V+VC T C L G L ++K+ Q+ + C C +P VM Sbjct: 579 KKRVVKVCVGTCCYLSGAYDLFSTLKDKLSQEDFKD----KVELAATFCFENCTQSPCVM 634 Query: 152 IGKDTYEDLTPERL-EEIIDA 171 + + T E++ EI+ Sbjct: 635 VDDVLIGEATVEKVINEILKQ 655 >gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 597 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VC T C+ G E ++E +I +K L + + C G C P V+I Sbjct: 5 RAHVLVCKGTGCVASGSEPIMEAFEKEIEKKGL----SKEVKVVQTGCLGLCELGPNVLI 60 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210 Y + E + EI++ +G + +R + SL+D + KR K Sbjct: 61 YPEGSYYCTVKAEDVPEIVEEH-LLKGRIVERLLYKERDTKER---YRSLMDIDFYKRQK 116 Query: 211 K 211 + Sbjct: 117 R 117 >gi|218671477|ref|ZP_03521147.1| formate dehydrogenase subunit gamma [Rhizobium etli GR56] Length = 164 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 17/45 (37%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 C G + L E + + DG+++ E V C C A Sbjct: 1 ACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLKLCAAA 45 >gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] Length = 596 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G + + N+I K D ++ C G C P+V+I Sbjct: 4 RSHVMVCGGTGCTSSGSDNVAAAFVNEIK-KAG---LDKEVAVIRTGCFGLCELGPVVVI 59 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQGDT 179 Y + PE + EI++ G+ T Sbjct: 60 YPEGVFYSKMKPEYVPEIVEEHLLKGRPVT 89 >gi|239826984|ref|YP_002949608.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70] gi|239807277|gb|ACS24342.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70] Length = 132 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + HV +C CM +G E++ R + L DG + C G C +A +V Sbjct: 8 GMKHHVLICNGGSCMRKGGEEVTLAIREE--IAMLEL--DGIVHTTRTRCNGRCQDACVV 63 Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 ++ Y +TPE+ E++ G+ Sbjct: 64 IVYPEGVWYNGVTPEKARELVRRHLRDGE 92 >gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 572 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G H VCG T C+ GC+ + ++I ++ L + E C G C PM+ Sbjct: 28 GYEYHALVCGGTGCVSSGCKSVKSALVDEIRKQGLE----AKVRVIETGCLGPCNLGPMI 83 Query: 151 MI--GKDTYEDLTPERLEEII-DAFSTGQGDT--IRPGPQIDRI 189 + YE +T +E ++ + G+ + P R+ Sbjct: 84 TVYPDGIFYEKVTAGDVESVVTEHLREGRPVNRLLHRCPDTGRV 127 >gi|226312181|ref|YP_002772075.1| 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599] gi|226095129|dbj|BAH43571.1| putative 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599] Length = 125 Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ HV +C CM +G E++ R I D + C G C +A +++ Sbjct: 9 TKHHVLICNGGSCMRKGGEEVTVAIREAIT----ESGLDDYVHTTRTRCNGRCEDACVMI 64 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + YE++TPE +++++ Sbjct: 65 VYPEGIWYENVTPEDAQKLVEE 86 >gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 602 Score = 62.1 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 17/106 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G E + +V KI + L ++ E C GAC P+++I Sbjct: 7 TILICAGGACISAGEESVKDVLERKIKEYNLQDT----INIVETGCMGACSLGPIMVIHP 62 Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQID 187 Y+ LTPE E+I++ G I P PQ + Sbjct: 63 EGVYYQKLTPEAAEKIVEEHLLKGRVVEEYLYKGDKGKIVPQPQKE 108 >gi|295704727|ref|YP_003597802.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319] gi|294802386|gb|ADF39452.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319] Length = 126 Score = 62.1 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RN K + D T+ C G C +AP+ Sbjct: 8 GTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGRCKDAPVA 63 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T I++ G Sbjct: 64 IVYPSGDWYKQVTETVAHRIVEEHLAG 90 >gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] Length = 594 Score = 62.1 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VCG T C+ E + + ++ +E C G C P+ + Sbjct: 2 KKYTICVCGGTGCLSSESEDVKNEFITL--IEKEGLTE--QVTVKETGCMGTCDLGPVAL 57 Query: 152 IGKD--TYEDLTPERLEEIIDA 171 I D Y L PE + +II++ Sbjct: 58 IDPDNVFYCKLKPEDVSDIINS 79 >gi|186685846|ref|YP_001869042.1| hypothetical protein Npun_F5801 [Nostoc punctiforme PCC 73102] gi|186468298|gb|ACC84099.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102] Length = 212 Score = 62.1 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 5/101 (4%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 ++ P +A + VC + CM RG + + + + + L ++ + C Sbjct: 102 HNVKVKPAKAKATILVCQKSDCMKRGGKAVCQALEAALSDRGLED----QVTIKGTGCMK 157 Query: 143 ACVNAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C P +VM K + + ++ ++D + +P Sbjct: 158 NCKAGPNLVMPDKTRHSRIQAAQVPRLMDKHFGDKSLEAQP 198 >gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus Pelagibacter ubique HTCC1062] Length = 552 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 15/116 (12%) Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVC 116 I+ +A +M + +FY + S +A VC + CM G ++ L + Sbjct: 32 ADGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKL 89 Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + K+ K + C G C + Y ++++II Sbjct: 90 QEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 134 >gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 552 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 15/116 (12%) Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVC 116 I+ +A +M + +FY + S +A VC + CM G ++ L + Sbjct: 32 ADGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKL 89 Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + K+ K + C G C + Y ++++II Sbjct: 90 QEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 134 >gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 602 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 17/106 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G E + +V KI + L ++ E C GAC P+++I Sbjct: 7 TILICAGGACISAGEESVKDVLERKIKEYNLQET----VNIVETGCMGACSLGPIMVIHP 62 Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQID 187 Y+ LTPE E+I++ G I P PQ + Sbjct: 63 EGVYYQKLTPEAAEKIVEEHLLKGRVVEEYLYQGDKGKIVPQPQKE 108 >gi|153955637|ref|YP_001396402.1| hypothetical protein CKL_3023 [Clostridium kluyveri DSM 555] gi|146348495|gb|EDK35031.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 74 Score = 61.7 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 EVI +YP R Q ++P+L Q + ++ R ++E ++ +D+ + R+ + Sbjct: 16 QEVIEKYP--RKQRFILPILHDIQRKYKYIPRQSLENLSKYMDIPFNRLYSMV 66 >gi|309389843|gb|ADO77723.1| NADH-quinone oxidoreductase chain E [Halanaerobium praevalens DSM 2228] Length = 79 Score = 61.7 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNSDGTLSWEEVECQ-GACVNAPMVMI 152 +++C TPC L G L+E + K + + C C AP++ Sbjct: 5 ILKICIGTPCHLMGAADLLEAVEELDLDLKN-------QIEIKTTHCIDNCCDKAPVIKF 57 Query: 153 GKDTYEDLTPERLEEII 169 Y+DL PE+L +II Sbjct: 58 NGKIYQDLNPEKLYKII 74 >gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 551 Score = 61.3 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%) Query: 58 RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG-CEKLIEVC 116 I+ +A ++ + +FY + + +A VC + CM G EKL + Sbjct: 31 PQDIKEIAKKHNLGVSTLHGAESFYEFLRPAHREKKA--FVCNGSACMCAGTQEKLKDTL 88 Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + K+ K + C G C + Y E++++I+ Sbjct: 89 KEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGKDIEKIDQILKG 133 >gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 596 Score = 61.3 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 11/119 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G K++E N+I ++ L ++ E C G C P++++ Sbjct: 3 RSHVLVCGGTGCTSSGSPKIMEALHNEIKKQGLEE----EVAVVETGCHGLCALGPIMIV 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 Y + P + EI+ + G+ T + + + +P GG+ +L D + K+ Sbjct: 59 YPDATFYSMVQPNDIPEIVSEHLLKGRVVT----RLLYQETVSPTGGIKALRDTDFYKK 113 >gi|326204435|ref|ZP_08194293.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM 2782] gi|325985467|gb|EGD46305.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM 2782] Length = 113 Score = 61.3 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 85 FQLSPVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 F +SP + HV VC T C +G LI+ + G + Sbjct: 11 FMVSP---KYHVFVCASCRINGTQKGFCHSKGSVALIQKFMEE--IDDNDLT--GEVMVT 63 Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C P+V+I Y ++T + +E I++ G G+ ++ Sbjct: 64 NTGCFGICDKGPVVVIYPEGTWYGNVTEDDVETIVEQHLIG-GEKVK 109 >gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 596 Score = 61.3 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +++ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSGSDEVAERFIEEIK-KAG---LDKEILVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + PE + EI++ Sbjct: 60 YPEGVFYSRVKPEYVPEIVEE 80 >gi|150020388|ref|YP_001305742.1| hydrogenase large subunit [Thermosipho melanesiensis BI429] gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis BI429] Length = 653 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V+VC T C +G +L+ +++ L + + C C NAP VM Sbjct: 574 KKTVVKVCLGTSCYAKGSYELLSQLIKLTNEEELS-----NVEIKGTFCLEKCGNAPNVM 628 Query: 152 IGKDTYEDLTPERLEEIIDA 171 + ++ + E+++E++ Sbjct: 629 VNDKIIDEASIEKIKEVLKE 648 >gi|170289103|ref|YP_001739341.1| hypothetical protein TRQ2_1314 [Thermotoga sp. RQ2] gi|166979950|sp|Q9X1D7|Y1420_THEMA RecName: Full=Protein TM_1420 gi|170176606|gb|ACB09658.1| conserved hypothetical protein [Thermotoga sp. RQ2] Length = 75 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V+VC + C L+G +++ + + +K C G C V I Sbjct: 2 IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 53 Query: 155 DTYEDLTPERLEEIIDA 171 + +TPE EEI+ Sbjct: 54 RLFSRVTPENAEEILKK 70 >gi|15644171|ref|NP_229220.1| hypothetical protein TM1420 [Thermotoga maritima MSB8] gi|4981984|gb|AAD36490.1|AE001794_6 hypothetical protein TM_1420 [Thermotoga maritima MSB8] Length = 77 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V+VC + C L+G +++ + + +K C G C V I Sbjct: 4 IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 55 Query: 155 DTYEDLTPERLEEIIDA 171 + +TPE EEI+ Sbjct: 56 RLFSRVTPENAEEILKK 72 >gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative symbiont of Hydra magnipapillata] Length = 619 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68 S + + +++YP + QSAV+ L Q++ G+VS + +V+A L Sbjct: 1 MSAATKSRFDREVAKYPADQKQSAVMACLAIVQQELGFVSAESEKVIAEHL 51 >gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 616 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC T C E++I R +I + L + + C G C P+V++ Sbjct: 34 HVMVCAGTGCTSSNSEEIISRLRVQIEKHGLGET----VKVVQTGCLGLCAKGPIVIVHP 89 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 Y +TPE + EI+++ G R Sbjct: 90 DDCMYTMVTPEDVSEIVESHLVGGTPVTR 118 >gi|325674817|ref|ZP_08154504.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707] gi|325554403|gb|EGD24078.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707] Length = 250 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G HV VC C RG + E + + + L D + + C C AP+ Sbjct: 147 PGFTRHVLVCRGPRCSARGGPETAEALDHALEARGLG---DDDVLVTQTGCMFPCSQAPV 203 Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISS 191 V + Y LT +R++ ++D G+ T G + R S+ Sbjct: 204 VAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHGAR--RRSA 246 >gi|294499376|ref|YP_003563076.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551] gi|294349313|gb|ADE69642.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551] Length = 126 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RN K + D T+ C G C +AP+ Sbjct: 8 GTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGRCKDAPVA 63 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T I+ G Sbjct: 64 IVYPSGDWYKQVTETVAHRIVKEHLAG 90 >gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] Length = 626 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140 + V VC T C +G ++ + + ++ ++ D ++ C Sbjct: 19 REKKLSGTSVYVCVGTGCTAKGALRVYDAFKRELEKRNLLGKVTLEKIDDDKVTLNRTGC 78 Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171 G C + P+V M + Y ++T E + EI++ Sbjct: 79 CGRCSSGPLVKIMPYRFFYSNVTSEDVPEIVEK 111 >gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 60.9 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD 155 VC T C G E+++ + +I + L + ++ C G C P+V+I Sbjct: 9 VCLGTGCQSGGAEEVLSSLKEEIERLSLEET----VQVKQTGCHGFCQRGPLVVIEPEGI 64 Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIR 181 Y +TP+ + EI + G+ R Sbjct: 65 FYSKVTPDDVSEIAKSLLPGETPVER 90 >gi|308068791|ref|YP_003870396.1| ferredoxin, 2Fe-2S [Paenibacillus polymyxa E681] gi|305858070|gb|ADM69858.1| Ferredoxin, 2Fe-2S (AaFd4) [Paenibacillus polymyxa E681] Length = 108 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 16/103 (15%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----RNSDGTLSWEEVEC 140 F+L P+ + HV VC CM E++ + R++I ++ C Sbjct: 4 FELEPM--KHHVLVCNGGTCMRHEGEEVTQAIRDEIRKQNAEAYIHTT--------RTRC 53 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 G C +A +V++ D Y +TP+ +++ TG+ Sbjct: 54 NGRCHDAAVVIVYPQGDWYGQMTPDSGTQLVQKLVTGEKLEPH 96 >gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] Length = 595 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 12/119 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G ++++ R+++ + L D +S + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSQQIMVKLRDELKGQGL----DQEVSVVQTGCHGLCALGPIMII 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 Y + E + EI+ + G+ P ++ + G+ +L D + K+ Sbjct: 59 YPDATFYAMVKEEDISEIVSEHLLKGR-----PVERLLYDETVTPAGIKALSDTDFYKK 112 >gi|75910726|ref|YP_325022.1| hypothetical protein Ava_4529 [Anabaena variabilis ATCC 29413] gi|75704451|gb|ABA24127.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 219 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P +A + VC + CM RG + L + + + L ++ + C C Sbjct: 108 KPDKAKATILVCQKSDCMKRGGKALCQALEATLSDRGLED----QVTIKGTGCMKNCKAG 163 Query: 148 P-MVMIGKDTYEDLTPERLEEIIDAFST 174 P +VM K Y + +++ ++++ Sbjct: 164 PNLVMPDKTRYTRIQADQVPQLMNKHFA 191 >gi|312881026|ref|ZP_07740826.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260] gi|310784317|gb|EFQ24715.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260] Length = 94 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G R + +C + C RG +K +EV R + + +S C+GAC P Sbjct: 14 KGERVVLTLCMGSSCFARGNQKNLEVIRQFLKDHRMED----RVSLVGSRCEGACTQGPN 69 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 + IG + + E L +++ Sbjct: 70 LRIGDRLFPRINQEDLPALLER 91 >gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 535 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 V C +T C ++ + + + L + V C G C P+V + Sbjct: 21 RVHCCTSTGCQAANSLQIEKNLATAVKEAHLEDT----VEVVGVGCMGFCGRGPLVEVDP 76 Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDT 179 YE++TPE II A + G+ + Sbjct: 77 QDLLYEEVTPESAASIIAALNGGKTEV 103 >gi|281412807|ref|YP_003346886.1| hypothetical protein Tnap_1390 [Thermotoga naphthophila RKU-10] gi|281373910|gb|ADA67472.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10] Length = 75 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V+VC + C L+G +++ + + +K C G C V I Sbjct: 2 IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 53 Query: 155 DTYEDLTPERLEEIIDA 171 + +TPE EEI+ Sbjct: 54 QLFSRVTPENAEEILKR 70 >gi|300868038|ref|ZP_07112676.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300333958|emb|CBN57854.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 236 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 +A + VC + C RG + + + + L ++ + C C P + Sbjct: 153 AKAKILVCQKSDCQKRGGRAICQALETALSDRGLED----HVTIQGTGCLKQCKAGPNII 208 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQG 177 +M K Y + P ++ II+ G Sbjct: 209 LMPDKTRYSRIEPAKIPGIIEKHFAVNG 236 >gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 594 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 17/103 (16%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C G +++ ++++ ++ L D + + C G C P+V++ Sbjct: 3 RAHVLVCGGTGCTSSGSHGVMDGLKSELKKQNL----DDEVLVVQTGCHGMCEMGPIVVV 58 Query: 153 --GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRP 182 Y ++ + + E+++ TG+GD P Sbjct: 59 YPEGTFYCRVSKDDVPELVEEHLLKGRTVDRLLYTGEGDVHVP 101 >gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Geobacter metallireducens GS-15] Length = 569 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 9/92 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC TPC+ G + +++ R + D + C G C P+V + Sbjct: 21 RCRIMVCAGTPCLSAGAQTVLDSLRKALA----ESRLDAEIEAVASGCMGPCSRGPLVKV 76 Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQGDT 179 + +E +TPE +I+ + + G+ Sbjct: 77 RQQGKKEIIFERVTPELARQILLSLAKGRRPP 108 >gi|312138266|ref|YP_004005602.1| ferredoxin-like protein [Rhodococcus equi 103S] gi|311887605|emb|CBH46917.1| putative ferredoxin-like protein [Rhodococcus equi 103S] Length = 250 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G HV VC C RG + E + + + L D + + C C AP+ Sbjct: 147 PGFTRHVLVCRGPRCSARGGPETAEALDHALEARGLG---DDDVLVTQTGCMFPCSQAPV 203 Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPG 183 V + Y LT +R++ ++D G+ T G Sbjct: 204 VAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHG 240 >gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424] Length = 530 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 24/126 (19%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +A +LD+A + R H C +T C ++ + + + + Sbjct: 3 LAELLDIAQQE-----------RDKQKPIRVHC--CTSTGCEAANSLEVKKNLQKAVKEG 49 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG-----Q 176 L + V C G C P+V I YE++TP + II++ G Q Sbjct: 50 KLED----KVEVIGVGCMGFCGKGPLVQIDPEDTLYEEVTPSQAASIINSLDGGTSDAAQ 105 Query: 177 GDTIRP 182 GD+ P Sbjct: 106 GDSHHP 111 >gi|17228092|ref|NP_484640.1| hypothetical protein all0596 [Nostoc sp. PCC 7120] gi|17129942|dbj|BAB72554.1| all0596 [Nostoc sp. PCC 7120] Length = 219 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P +A + VC + CM RG + L + + + L ++ + C C Sbjct: 108 KPEKAKATILVCQKSDCMKRGGKALCQALEATLSDRGLED----QVTIKGTGCMKNCKAG 163 Query: 148 P-MVMIGKDTYEDLTPERLEEIIDAFST 174 P +VM K Y + +++ ++++ Sbjct: 164 PNLVMPDKTRYTRIQADQVPKLMNKHFA 191 >gi|239905421|ref|YP_002952160.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1] gi|239795285|dbj|BAH74274.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1] Length = 685 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P T+ V+VC T C LRG + ++ I + L D S+ C C P Sbjct: 585 PAQTKVRVRVCLGTSCHLRGAQDILTGMLKHIVENGLENAVDVRASF----CFEQCAKGP 640 Query: 149 MVMIGKDTYEDLTPERLEEIIDA-FSTGQGDTIRP 182 V + + T E + +DA +P Sbjct: 641 TVEMDGEVMTHCTLESVLAALDAHLRNPLPQPTKP 675 >gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822] gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822] Length = 546 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%) Query: 64 VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123 +A +L++A + R H C +T C + + + K Sbjct: 3 LAELLEIAATE-----------RAKQKPIRVHC--CTSTGCEAANSLTVKKNLQKA--VK 47 Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175 H + V C G C P+V I YE++TPE+ II+ + G Sbjct: 48 EGHLEE--QVEIIGVGCMGFCGKGPLVQIDPENTLYEEVTPEQAASIIEGINGG 99 >gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 621 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152 V+VC T C+ G ++ E + ++ L D E C G C P + Sbjct: 25 RVRVCAGTGCLAGGSARVKEAFEVEAARRGLALGVD--FRAETTGCHGFCEEGPLVVAEP 82 Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175 G Y +TP + EI+DA ++G Sbjct: 83 GGILYRRVTPSDVPEILDALASG 105 >gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis aeruginosa NIES-843] Length = 535 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 V C +T C ++ + + + L + V C G C P+V + Sbjct: 21 RVHCCTSTGCQAANSLQIKKNLATAVQEADLEDT----VEVVGVGCMGFCGRGPLVEVDP 76 Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDT 179 YE++TPE II A + G+ + Sbjct: 77 QDLLYEEVTPESAASIIAALNGGKTEV 103 >gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8] gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8] gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima MSB8] Length = 645 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + V+VC T C +G ++++ + + + + G + C C +P Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDME----GKIEVLGTFCVENCGASP 620 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174 V++ T E++ ++ S Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643 >gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] Length = 643 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V VCG T C G ++IE + + K D +S C G C P+++ Sbjct: 50 KKKAVLVCGGTGCTSSGSRRVIERLKEE--IKKQGLEED--VSVVMTGCFGLCALGPIMI 105 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDT 179 + Y + E + EI++ G+ DT Sbjct: 106 VYPEGAFYSMVKEEEIPEIVEQHLLHGKVDT 136 >gi|170289108|ref|YP_001739346.1| hydrogenase large subunit [Thermotoga sp. RQ2] gi|170176611|gb|ACB09663.1| hydrogenase large subunit domain protein [Thermotoga sp. RQ2] Length = 645 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + V+VC T C +G ++++ + + + G + C C +P Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDRE----GKIEVLGTFCVENCGASP 620 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174 V++ T E++ ++ S Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643 >gi|148270497|ref|YP_001244957.1| hydrogenase large subunit [Thermotoga petrophila RKU-1] gi|281412803|ref|YP_003346882.1| hydrogenase large subunit domain protein [Thermotoga naphthophila RKU-10] gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila RKU-1] gi|281373906|gb|ADA67468.1| hydrogenase large subunit domain protein [Thermotoga naphthophila RKU-10] Length = 645 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P G + V+VC T C +G ++++ + + + G + C C +P Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDRE----GKIEVLGTFCVENCGASP 620 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174 V++ T E++ ++ S Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643 >gi|295400339|ref|ZP_06810318.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111135|ref|YP_003989451.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp. Y4.1MC1] gi|294977614|gb|EFG53213.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216236|gb|ADP74840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp. Y4.1MC1] Length = 122 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + HV +C CM +G E++ R + L DG + C G C +A +V Sbjct: 8 GMKHHVLICNGGSCMRKGGEEVTLAIREE--IASLEL--DGIVHTTRTRCNGRCQDACVV 63 Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 ++ Y +TPE+ E++ G+ Sbjct: 64 IVYPEGVWYNGMTPEKGREVVRRHLRDGE 92 >gi|220905651|ref|YP_002480962.1| hypothetical protein Cyan7425_0205 [Cyanothece sp. PCC 7425] gi|219862262|gb|ACL42601.1| conserved hypothetical protein [Cyanothece sp. PCC 7425] Length = 204 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 +A + VC + C RG + + + N ++ + C C P+V Sbjct: 110 AKAKILVCQGSDCRARGARAVQQKLEQTLD-DRGLTN---QVTVKSTGCMHCCKKGPVVV 165 Query: 151 -MIGKDTYEDLTPERLEEIIDA 171 M K+ Y+ +TP ++ ++ Sbjct: 166 FMPDKNRYQQVTPTQIPTLVSE 187 >gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 90 VGTRA--HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G + V +CG T C+ G + ++ + + C G C Sbjct: 19 KGRKYSKQVLICGGTGCISSGSNDIAAKMEERVKALGKED----EIRVIKTGCFGFCEKG 74 Query: 148 PM--VMIGKDTYEDLTPERLEEIIDAFSTG 175 P+ ++ Y ++TPE +++++D G Sbjct: 75 PIVKMLPDNTFYTEVTPEDVDKLVDKHLIG 104 >gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] Length = 688 Score = 59.4 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R VQVC T C LRG + ++ I + N+ + C C + P V Sbjct: 590 PRLRVQVCLGTSCHLRGAQDILTGLLGHIA-EQGLTNA---VDVRASFCHEKCADGPTVQ 645 Query: 152 IGKDTYEDLTPERLEEIIDA 171 I D T E + +DA Sbjct: 646 INGDVMTHCTLESVIAALDA 665 >gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100] Length = 549 Score = 59.4 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 + + + +++ + V ATFY + V VC + C+L G + + Sbjct: 32 LDQEVMHQISDEYLVGNANVYGAATFYDFLNPEQSNKK--VFVCAGSACLLAGTQ---QA 86 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + + Q S EV C G C Sbjct: 87 LQQTLEQHFDPT------SIGEVYCLGRC 109 >gi|261885721|ref|ZP_06009760.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 56 Score = 59.4 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179 +SDG S E EC G C AP ++ + + L + +I+ + Sbjct: 2 GETSSDGLFSLGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKENASS 56 >gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485] Length = 535 Score = 59.4 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 16/104 (15%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAP 148 TR + C C G ++ + + G + V C G C + P Sbjct: 18 TRQRILCCAAAGCQASGSLEIKRRLETVL-------TATGKLAEVDVIPVGCMGLCGHGP 70 Query: 149 MVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 ++ I + +E +TP E+++ A G P+ DR + Sbjct: 71 LLRIEPSGEMFEHVTPADAEDLVAALDGG----PCTVPRCDRNA 110 >gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium enrichment culture clone BF] Length = 597 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C+ G +K+ E +++ ++ L D + E C G C P++++ Sbjct: 5 RAHVLVCGGTGCVSSGSKKIQEALSDELAKQNL----DKEIKVVETGCHGFCEMGPILIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +T E ++EI+ Sbjct: 61 YPEGTFYCRVTVEDVQEIVAE 81 >gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] Length = 631 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C G +K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSAGSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y +TPE +EI + G+ Sbjct: 99 NVFYVKVTPEDAKEIAEKHLLKGE 122 >gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 615 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 + + +CG T C G ++ E +++ + L D E C G C P + Sbjct: 24 RKTCLMLCGGTGCRSTGSLEIKEALLEELNTRGLQDTVD----VVETGCNGFCARGPILV 79 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 V Y+ LT + + E++ Sbjct: 80 VQPHDIFYQMLTLQDIPELVQE 101 >gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563] Length = 562 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150 + H+ VCG T C ++++ + + + + + + C G C P+V Sbjct: 34 KYHILVCGGTACESNKSDEIVRLLKEYAEKNGIE----NDVLVVKTGCFGFCSQGPVVKI 89 Query: 151 MIGKDTYEDLTPERLEEIIDA 171 M G+ Y + P ++II+ Sbjct: 90 MPGRVFYTHVEPAHAKDIIEK 110 >gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 596 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +++ + +I K L D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEIQVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E + EI++ Sbjct: 60 YPEGVFYSRVKEEYVPEIVEE 80 >gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF [Desulfatibacillum alkenivorans AK-01] Length = 633 Score = 59.0 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAPMVM 151 + VC T C++ G + + + + + + + CQG C P+V Sbjct: 37 VQIVVCHGTGCLVSGSPAVTRAFKKVLG----ETDIEAKVMPGVKTTGCQGFCSRGPLVT 92 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 I YE ++P+ +E+I++ T++ G ++R Sbjct: 93 IMPQGIFYERVSPKDVEDIVEQ-------TVKNGKPVER 124 >gi|239618160|ref|YP_002941482.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1] gi|239506991|gb|ACR80478.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1] Length = 77 Score = 59.0 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA---PMVM 151 V+VC T C L G +++ V + P + V C G C P++ Sbjct: 2 KVKVCVGTMCHLMGASEILTVIQEIADNDPN-------IELVAVTCPGYCHVGKKPPIIE 54 Query: 152 IGKDTYEDLTPERLEEIIDA 171 I YE++T E + I+ Sbjct: 55 INGQVYENVTVESVYHILKE 74 >gi|138895355|ref|YP_001125808.1| putative ferredoxin [Geobacillus thermodenitrificans NG80-2] gi|134266868|gb|ABO67063.1| Putative ferredoxin [Geobacillus thermodenitrificans NG80-2] Length = 198 Score = 59.0 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 28/151 (18%) Query: 79 ATFYTQFQLSP-------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HR 127 +FY + G + HV +C C+ G + + R + + H Sbjct: 55 ISFYHSSKRGDLVATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHT 114 Query: 128 NSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 C G C +A ++++ Y +TPE+ +E + G+G +R Sbjct: 115 T--------RTRCNGRCQDACVMIVYPDGVWYRQMTPEKAKE-VARVHLGEGVPLR---- 161 Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216 ++ G L ++ K+ ++ Sbjct: 162 --EWATYEYEGELVLTPIGEREAASGKRKNE 190 >gi|121535574|ref|ZP_01667381.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1] gi|121305814|gb|EAX46749.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1] Length = 78 Score = 59.0 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C T C L G + LI ++ H + V C C P V I Sbjct: 5 VIEICVGTSCYLLGAQDLIRAVEELPCEQRSH------IELRGVTCLKTCGKGPNVRIDG 58 Query: 155 DTYEDLTPERLEEIIDA 171 +TPERL II Sbjct: 59 VVLAGMTPERLLTIIQD 75 >gi|222100046|ref|YP_002534614.1| hypothetical protein CTN_1072 [Thermotoga neapolitana DSM 4359] gi|221572436|gb|ACM23248.1| Hypothetical Protein CTN_1072 [Thermotoga neapolitana DSM 4359] Length = 75 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC + C L+G +++E R D C G C V I Sbjct: 2 TIRVCMGSSCYLKGSYRVVEKLR--------ELQKDYNFKLYGSLCFGRCSQGICVEIDG 53 Query: 155 DTYEDLTPERLEEIIDA 171 + ++PE +EE++ Sbjct: 54 RLFTGVSPENVEELVKK 70 >gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] Length = 596 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +++ + +I K L D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSNSDRVAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E + EI++ Sbjct: 60 YPEGVFYSRVKEEYVPEIVEE 80 >gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b] Length = 577 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] Length = 595 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G K+IE + + + C G C P+V++ Sbjct: 3 RSHVLVCGGTGCTSSGSVKIIEEFERE--IAATGLTD--EVKVVKTGCFGLCALGPVVIV 58 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E ++EI+D Sbjct: 59 YPEGSFYSRVKAEDVKEIVDE 79 >gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit [Brachyspira hyodysenteriae WA1] Length = 562 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150 + H+ VCG T C ++++ + R +K +D + + C G C P+V Sbjct: 34 KYHILVCGGTACESNKSDEIVRLLREY-AEKNGI--AD-EVLVVKTGCFGFCSQGPVVKI 89 Query: 151 MIGKDTYEDLTPERLEEIIDA 171 M G+ Y + PE ++II+ Sbjct: 90 MPGRVFYTHVGPEHAQDIIEK 110 >gi|119494760|ref|ZP_01624781.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106] gi|119452002|gb|EAW33231.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106] Length = 189 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148 G +A + VC + C +G L + ++ L ++ ++ C C P Sbjct: 108 AGKKAQILVCDKSDCRKKGGSHLCSALETAVQEQGLEE----HVTIKKTGCLKRCKAGPN 163 Query: 149 -MVMIGKDTYEDLTPERLEEIIDA 171 ++M K Y ++ + L ++I Sbjct: 164 VVMMPDKTRYSRVSAKELPKLIAK 187 >gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] Length = 667 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%) Query: 33 YPPS---RCQSAVIPLLMRAQEQEGWVSRA---AIEVV-ANILDMAYI-RVLEIA-TFYT 83 YP R + A +L Q + +S + + E+ T Y Sbjct: 499 YPNDVRTRARRA--KILKETQSVDVLISPTENFHMRELYTKYFGAPLSHEAHEVLHTEYK 556 Query: 84 Q-----------FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 L V + V VC T C +G +++E + +++ +N Sbjct: 557 HRKRIEEEEIEILPLPDVEDKVSVSVCLGTSCYSKGSYEILENLISLANKEEWAKN---- 612 Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI-IDAFSTGQGDT 179 L + C C AP V++ E T E+++E+ ++ +GD Sbjct: 613 LEIKGTFCVENCGMAPNVVVNDKIVEQATIEKIKEVALNELGRKKGDP 660 >gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941] Length = 532 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 7/94 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 ++ C C G L + + R + V C G C + P+V + Sbjct: 20 TCIRCCTALGCQSAGSLSLKQRLEEA--VAEVDRTD---IEVIGVGCMGMCGHGPLVRVD 74 Query: 154 KD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 D YE + I+ A G R PQ Sbjct: 75 PDGVLYEHVHAADAPSIVAALDGGDATAPRGDPQ 108 >gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 596 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +K+ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P+ + EI++ Sbjct: 60 YPEGVFYSRVKPDYVPEIVEE 80 >gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] Length = 596 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +K+ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P+ + EI++ Sbjct: 60 YPEGVFYSRVKPDYVPEIVEE 80 >gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 605 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW----EEVECQGACVNAPMV 150 V VC T C+ G + + ++ G + C G C P+V Sbjct: 13 TVLVCCGTGCLANGSMDVFRALQKQLE------TEGGEFQVRTYTKATGCNGWCEKGPLV 66 Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 I TY ++ + I+D G+ Sbjct: 67 KIVPDDITYCNVKASDVPAIVDKTLKKGE 95 >gi|12644506|sp|O87688|CBIW_BACME RecName: Full=Putative 2Fe-2S ferredoxin gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus megaterium] Length = 127 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C + CM +G E+ + RN K N D + C G C +AP+ Sbjct: 10 GTKHHVLICNGSSCMRKGGEEATQAIRN----KVAELNLDEAVHTTRT-CNGRCKDAPVA 64 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ D Y+ +T + I++ G Sbjct: 65 IVYPSGDWYKQVTEKVAHRIVEEHLAG 91 >gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl] gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl] Length = 535 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + C C G ++ + + D V C G C + P+V Sbjct: 18 ARFRILCCAAAGCQASGSLEIKRRLELVLSAAGKQADVD----VVPVGCMGLCGHGPLVR 73 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTG 175 + +E +TP EE++ A G Sbjct: 74 LEPTGKVFERVTPADAEELVAALDQG 99 >gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] Length = 596 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +K+ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P+ + EI++ Sbjct: 60 YPEGVFYSRVKPDYVPEIVEE 80 >gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 596 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +K+ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P+ + EI++ Sbjct: 60 YPEGVFYSRVKPDYVPEIVEE 80 >gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 596 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +K+ E +I K D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P+ + EI++ Sbjct: 60 YPEGVFYSRVKPDYVPEIVEE 80 >gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [Nostoc sp. PCC 7120] gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120] Length = 188 Score = 58.6 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P A + VC + C+ RG + L+ + ++ E CQ C +AP Sbjct: 96 PAPPPAKIMVCQKSGCVKRGGDGLLSELEKTL-CDRGLL---DKVTIEHTGCQKRCSSAP 151 Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTG 175 ++M+GK Y+ + PE + +++ + TG Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTG 180 >gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 596 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ +CG T C G + +N+I ++ L +D ++ E C G C P+ ++ Sbjct: 5 RQHLLICGGTGCHAAGSADVRTALQNEIKKQGL---AD-EVAVVETGCNGFCAMGPVAVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 G Y LT + + E++ Sbjct: 61 YPGGTFYVSLTIDDVPELVQE 81 >gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus Ellin6076] Length = 548 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 HV VC C+ G E++ + + ++ + + + + V C G C P+V + Sbjct: 22 HHVCVCIAAGCLSSGAEQVRDALKKEVAESGMQ----NEVLVKGVGCMGLCSAGPLVGVT 77 Query: 153 -GKDTYEDLTPERLEEIIDAFSTG-QGDTIRPGP 184 + ++TP EII + TG + ++ P Sbjct: 78 TDGQMFAEVTPAAAPEIIRSLDTGSEPGGVKRCP 111 >gi|294646918|ref|ZP_06724539.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|292637863|gb|EFF56260.1| conserved domain protein [Bacteroides ovatus SD CC 2a] Length = 159 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|209525188|ref|ZP_03273731.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima CS-328] gi|209494373|gb|EDZ94685.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima CS-328] Length = 190 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P + + VC + C RG + + V + + LH + E+ C C Sbjct: 104 QPKPAK--ILVCQKSDCRQRGGQAVCRVLEQALCDRGLHD----QVKIEKTGCLKKCKLG 157 Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFST 174 P +VM K Y + P + E+I+ Sbjct: 158 PNLVVMPDKAHYTRVKPSDISEVIEKHLA 186 >gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23] gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23] Length = 635 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 635 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 610 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G E + + K+ D +S E C GAC P+ ++ Sbjct: 7 TILICAGGGCISAGEESVKQAFERKLK----EYGLDTVVSVVETGCMGACSLGPLAIVYP 62 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y+ LTP+ E+I++ Sbjct: 63 DGVYYQKLTPKAAEKIVEE 81 >gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Bacteroides xylanisolvens XB1A] Length = 635 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] Length = 600 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+H+ VC T C K+IE ++ + + + + + C G C P+VMI Sbjct: 5 RSHILVCTGTGCTSSNSLKIIEAFERELEAQGMAKEA----QVVKTGCFGLCAMGPIVMI 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +TP + EI+ Sbjct: 61 YPEGACYTKVTPADVPEIVSE 81 >gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1] Length = 537 Score = 58.2 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 ++ C C G L + + R + V C G C + P+V + Sbjct: 21 CIRCCTALGCQSAGSLSLKQRLEEA--VAEVDRTD---IEVMGVGCMGLCGHGPLVRVDP 75 Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 YE + I+ A G+ + P Sbjct: 76 EGTLYEHVRAADAPSIVAALDGGEATAPKGDP 107 >gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] Length = 630 Score = 57.8 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G R V VCG T C +++ + ++ K + +D + C G C Sbjct: 32 KETGYRKQVLVCGGTGCQSSHSMDVLKALKEELAAKGI---AD-EVLVVRTGCFGLCSLG 87 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P+V++ Y TPE ++ I+D Sbjct: 88 PIVIVYPEGAFYAQATPEGIKRIVDE 113 >gi|332712123|ref|ZP_08432051.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L] gi|332348929|gb|EGJ28541.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L] Length = 185 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 +A + VC + C RG + + + + L + +E C C + P + Sbjct: 105 RKASILVCQKSSCRKRGGQAVCNAIASSLKDHGLED----QVKIKETGCLKQCKHGPNLV 160 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 +M K Y ++ P+++ +I+ Sbjct: 161 MMPDKARYSEVAPQQIPTLIER 182 >gi|307718916|ref|YP_003874448.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM 6192] gi|306532641|gb|ADN02175.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM 6192] Length = 91 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146 ++ + VC T C + G L+ R+ + + L WE C C Sbjct: 2 SKIRITVCVGTACYVMGGADLL-ALRDALPPEWAS-----HLEWEGTPCLNHCREFGTER 55 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 AP V++ + +TPERL+ I G D R Sbjct: 56 APFVLVDGNLLAGVTPERLKAEIARLIAGGTDAER 90 >gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] Length = 595 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +K+ E +I + L + + C G C P++++ Sbjct: 3 RSHVLVCGGTGCTSSGSQKIREKLEAEIKKNGLE----NEVGVVKTGCFGLCALGPIMIV 58 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E + EI++ Sbjct: 59 YPEGSFYAMVKEEDIPEIVEE 79 >gi|332298929|ref|YP_004440851.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168] gi|332182032|gb|AEE17720.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168] Length = 81 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC + C RG EV + + + L ++ C+ C N P V I Sbjct: 3 TITVCMGSSCFSRGNSANAEVIQRFLTENDLQD----KVTLRGCLCESECKNGPNVRIDG 58 Query: 155 DTYEDLTPERLEEII 169 Y ++TPE L +++ Sbjct: 59 KLYTNMTPESLVDLL 73 >gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] Length = 635 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + I +K G + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKAI-EKNGIT---GKVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|254410381|ref|ZP_05024160.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC 7420] gi|196182587|gb|EDX77572.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC 7420] Length = 101 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 16/93 (17%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ VC + C + LI+ ++I + L D +S C C Sbjct: 6 HHIFVCSSFRVNGNAKGVCQKKDSTNLIQYLESEITDRGL----DALVS--STGCMNLCN 59 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176 N P++M+ Y ++ E ++EI+DA G+ Sbjct: 60 NGPVMMVYPDNYWYGNVDEEAIDEILDALEDGK 92 >gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 1032 Score = 57.8 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R V VCG C+ C ++ + + + G + C G C P++++ Sbjct: 25 RRQVLVCGGAGCISSNCGEVRDALVKA--VENFQLS--GEVQVMVTGCMGTCAMGPVILV 80 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +TP+++E+++ Sbjct: 81 EPEGVFYTKMTPDKVEQVVAR 101 >gi|300313591|ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1] gi|300076376|gb|ADJ65775.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1] Length = 106 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%) Query: 94 AHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 HV C T C +G + E + + K L ++ G + + C C Sbjct: 9 HHVFFCLNQRQPGERTCCADKGAQAAQEHAKKR--IKQLGLSAPGKVRINKAGCLERCEE 66 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+V+I Y + E ++EIID+ G Sbjct: 67 GPVVVIYPQGTWYTYVDKEDIDEIIDSHIVG 97 >gi|166368041|ref|YP_001660314.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa NIES-843] gi|166090414|dbj|BAG05122.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa NIES-843] Length = 184 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148 +A V +C + C G ++ + + + +K L ++ + C C P Sbjct: 92 KAKKATVLICQKSDCWKNGGARVCQRLESGLEEKGLGE----AVNIKLTGCLKQCKKGPN 147 Query: 149 -MVMIGKDTYEDLTPERLEEIIDAFST 174 +VM K Y + P+ + +I+ Sbjct: 148 LVVMPDKKHYNQVAPQDVPSLIERHFA 174 >gi|154150692|ref|YP_001404310.1| ferredoxin, 2Fe-2S [Candidatus Methanoregula boonei 6A8] gi|153999244|gb|ABS55667.1| ferredoxin, 2Fe-2S [Methanoregula boonei 6A8] Length = 102 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 14/94 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C + ++ +I R+ G + C G Sbjct: 4 PKHHIFVCTSSRANGQQKGFCHSKEGVAIMSRFMEEI----EERDCGGEVFLSNTGCFGI 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C P+V++ Y +TP+ + EI+D G Sbjct: 60 CDKGPVVVVYPDNVWYGAVTPDDVTEIMDTHIEG 93 >gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] Length = 598 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+H+ VCG T C+ GCE++ E + ++ K N + E C G C P++++ Sbjct: 7 RSHILVCGGTGCVSSGCEEVQEALKEELD-KQGLTNE---IKIVETGCHGFCEKGPILIV 62 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y ++ PE LEE+++ Sbjct: 63 YPEGVFYCEVQPEDLEELVEE 83 >gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5] Length = 572 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 + VC +TPC+ G + + +D + C G C P++ + Sbjct: 23 RILVCCSTPCLSSGAAAIKSALESA----VAEHQADMAIEAVATGCMGPCSRGPVLTVQQ 78 Query: 154 ----KDTYEDLTPERLEEIIDAF-STGQGDTIRPGP 184 YE +T E E++ + TG T + P Sbjct: 79 PGAADTVYEHVTGEFAVELVQHYARTGTLPTQQQVP 114 >gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 596 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ VCG T C+ ++L E + + ++ L + C G C P+V + Sbjct: 4 KMHILVCGGTGCISSQSDRLAEALKEALAKRGLAE----EVKVVLSGCFGFCEQGPIVKV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +TPE +EI+ Sbjct: 60 APDNTFYVKVTPEDADEIVAE 80 >gi|315187126|gb|EFU20883.1| hypothetical protein SpithDRAFT_0491 [Spirochaeta thermophila DSM 6578] Length = 91 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146 ++ + VC T C + G L+ R+ + + L WE C C Sbjct: 2 SKIRITVCVGTACYVMGGADLL-ALRDALPPEWA-----PHLEWEGTPCLNHCREFGTER 55 Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 AP V++ + +TPERL+ I G D R Sbjct: 56 APFVLVDGNLLAGVTPERLKAEIARLIAGGTDAER 90 >gi|196249200|ref|ZP_03147899.1| putative ferredoxin [Geobacillus sp. G11MC16] gi|196211429|gb|EDY06189.1| putative ferredoxin [Geobacillus sp. G11MC16] Length = 132 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 21/133 (15%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145 G + HV +C C+ G + + R + + H C G C Sbjct: 7 RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203 +A ++++ Y +TPE+ +E + G+G +R ++ G L Sbjct: 59 DACVMIVYPDGVWYRQMTPEKAKE-VARVHLGEGVPLR------EWATYEYEGELVLTPI 111 Query: 204 NSKKRGKKKKDDK 216 ++ K+ ++ Sbjct: 112 GEREAASGKRKNE 124 >gi|195400737|ref|XP_002058972.1| GJ15321 [Drosophila virilis] gi|194141624|gb|EDW58041.1| GJ15321 [Drosophila virilis] Length = 71 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQS 40 + V R E+ F FS E+ V+ ++S YP + Sbjct: 31 LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRG 70 >gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2] Length = 601 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 38/140 (27%) Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 + A L + + + VC + C+ G ++++ Sbjct: 3 PEELQRIAAEELQ------------------AKSAAKHRIGVCTASGCLSCGSREVLKAI 44 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT---------------YEDLT 161 + +P + L E V C G C P+VM+ +++LT Sbjct: 45 EQEAAARP-----EANLRIEGVGCMGLCSRGPLVMVQSGPVPAENSGAGAETAFLFKELT 99 Query: 162 PERLEEIIDAFSTGQGDTIR 181 P ++ + D Sbjct: 100 PADAPALVAYLEQQKSDPPT 119 >gi|159029412|emb|CAO90788.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 191 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148 +A V +C + C G ++ + + + +K L ++ + C C P Sbjct: 99 KAKKATVLICQKSDCWKNGGARVCQRLESSLEEKGLGE----AVNIKLTGCLKQCKKGPN 154 Query: 149 -MVMIGKDTYEDLTPERLEEIIDAFST 174 +VM K Y + P+ + +I+ Sbjct: 155 LVVMPDKKHYNQVAPQDVPSLIERHFA 181 >gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 547 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ VC T C + +++I+ + +K + + C G C P++ I Sbjct: 5 RLHMLVCAGTACESQESKEIIKNLEETLKEKGYE----KEVQIVKTGCFGFCEKGPIIKI 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y ++ PE + EI++ Sbjct: 61 HPDHVFYVEVKPEDVNEIVEE 81 >gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum] Length = 596 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C +++ + +I K L D + C G C P+V++ Sbjct: 4 RSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVV 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E + EI++ Sbjct: 60 YPEGVFYSCVKEEYVPEIVEE 80 >gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Microcoleus chthonoplastes PCC 7420] Length = 538 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 V C +T C + + K + V C G C P+V I Sbjct: 21 RVHCCTSTGCQAANSLGVKKNLEGA--VKAADLGD--RVQVVGVGCMGFCGRGPLVEIDP 76 Query: 154 -KDTYEDLTPERLEEIIDAFSTG 175 YE++TP+ II++ + G Sbjct: 77 QDKLYEEVTPDDAASIIESLNGG 99 >gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] Length = 635 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + K + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IKKSEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+H+ +CG T C+ GCE++ + +++ ++ E C G C P+++I Sbjct: 7 RSHIIICGGTGCVSSGCEEVQKALEDEL--DKQDLTD--EINIVETGCHGLCEKGPVMVI 62 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +L PE +EE++ Sbjct: 63 YPEGIFYCELQPEDMEELVTE 83 >gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 604 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 14/91 (15%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-----SWEEVECQGACVNAP 148 + VC T C+ G ++ + ++ + + D + S C G C P Sbjct: 10 HLLLVCCGTGCVANGAREVYQALKDNL------TSDDKAVLAATTSARATGCHGLCAQGP 63 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 V I TY + + EI++ G+ Sbjct: 64 FVRILPEDITYCRVKAADIPEIVEKTLKQGE 94 >gi|307352421|ref|YP_003893472.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM 11571] gi|307155654|gb|ADN35034.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM 11571] Length = 102 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 14/94 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C + ++ +I ++ L G + C G Sbjct: 4 PKYHIFVCSSSKPNGQQKGYCHSQAGVDILMRFVEEIDERDLG----GEVFVNNTGCFGI 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C P+V++ Y +TP+ +EEI+D G Sbjct: 60 CDKGPIVVVYPDNVWYGSVTPDDVEEILDEHIEG 93 >gi|325679184|ref|ZP_08158775.1| hypothetical protein CUS_5481 [Ruminococcus albus 8] gi|324109113|gb|EGC03338.1| hypothetical protein CUS_5481 [Ruminococcus albus 8] Length = 83 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153 +Q+C + C L+G E +IE+ + I L ++ C G C V + Sbjct: 2 IIQICVGSSCHLKGSEDMIELLKQAISTHDLE----NEVTLAGSFCAGRCNRVGVTVTVD 57 Query: 154 KDTYEDLTPERLEE 167 + Y +TPE E Sbjct: 58 DEVYTGVTPEGFAE 71 >gi|307718919|ref|YP_003874451.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM 6192] gi|306532644|gb|ADN02178.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM 6192] gi|315187123|gb|EFU20880.1| hypothetical protein SpithDRAFT_0488 [Spirochaeta thermophila DSM 6578] Length = 84 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC + C RG ++V R + D + C G C P+V IG Sbjct: 7 IVVCMGSSCHARGNALTVKVIRAWL----EEHGLDQDVEVRGELCSGRCKEGPVVRIGNR 62 Query: 156 TYEDLTPERLEEII 169 YE + PE + +I+ Sbjct: 63 IYERVQPEAVPDIL 76 >gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 610 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 21/107 (19%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G + + + ++ K D + E C GAC P+ +I Sbjct: 10 TILICAGGACISAGEKSVKDAFEEELK-KYG---LDEVVRVIETGCMGACTLGPIAVIYP 65 Query: 153 GKDTYEDLTPERLEEIIDA------------FSTGQGDTIRPGPQID 187 Y+ LTP+ +EI++ + +G +P P++ Sbjct: 66 EGVFYQKLTPDAAKEIVEEHILKGRIVEKHLYRAPEG---KPVPRVH 109 >gi|310826807|ref|YP_003959164.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612] gi|308738541|gb|ADO36201.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612] Length = 83 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C + C ++G ++++ + + ++ L + C AC + V + Sbjct: 4 IHICIGSACHVKGSYQVVQRFKELVAERGLE----NEVELMGTFCLDACSDGVAVKVDDH 59 Query: 156 TYEDLTPERLEEIIDAFSTGQ 176 Y + PE ++++ D G Sbjct: 60 IYT-VKPEGVDQLFDQIMEGN 79 >gi|257061417|ref|YP_003139305.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802] gi|256591583|gb|ACV02470.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802] Length = 182 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 + + VC + C RG E L + K+ + L + + C C N P + Sbjct: 102 DKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLGD----QVEIKLTGCLKQCKNGPNVV 157 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 V+ K Y + P +++++++ Sbjct: 158 VLPDKARYSQVHPRQVDKLLEK 179 >gi|218247247|ref|YP_002372618.1| iron-sulfur cluster-binding protein-like protein [Cyanothece sp. PCC 8801] gi|218167725|gb|ACK66462.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp. PCC 8801] Length = 182 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 + + VC + C RG E L + K+ + L + + C C N P + Sbjct: 102 DKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLGD----QVEIKLTGCLKQCKNGPNVV 157 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 V+ K Y + P +++++++ Sbjct: 158 VLPDKARYSQVHPRQVDKLLEK 179 >gi|313836940|gb|EFS74654.1| hypothetical protein HMPREF9621_00930 [Propionibacterium acnes HL037PA2] gi|314929469|gb|EFS93300.1| hypothetical protein HMPREF9607_00513 [Propionibacterium acnes HL044PA1] gi|314971446|gb|EFT15544.1| hypothetical protein HMPREF9622_01318 [Propionibacterium acnes HL037PA3] gi|328906873|gb|EGG26639.1| ferredoxin [Propionibacterium sp. P08] Length = 263 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ VC C +G L +V NK+ Q ++ C C +AP+V+I Sbjct: 166 RHHLLVCRGPRCCAQGAVALHDVLHNKLVQADAIDTE-VLVTV--TGCMFPCNHAPLVVI 222 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDT-----IRPGPQ 185 LT + ++EI+ S Q + P P Sbjct: 223 WPDGKCL-RLTEDNIDEIVRDLSAPQEASLTASMPPPTPD 261 >gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1] Length = 632 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VCG T C G K+IE ++ L + + C G C P++++ Sbjct: 33 HVLVCGGTGCTSSGSPKIIEKLEEELAANGLKD----KVQIVKTGCFGLCERGPIMIVYP 88 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 Y + + + I++ G G+ ++ Sbjct: 89 EGSFYSRVKVDEIPRIVEEHLVG-GNPVK 116 >gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] Length = 628 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R HV VC T C ++E + ++ D + + C G C P+V Sbjct: 32 ERLHVLVCAGTGCTSSSSALIMEQMQQQL-IARG---LDQEVRVIKTGCFGLCQKGPIVA 87 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + K Y + P+ + EII+ G G ++ Sbjct: 88 VYPDKIFYCHVKPDDVGEIIEQHFIG-GQPVK 118 >gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 635 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T + +CG T C + + E + + + V C G C P+V Sbjct: 42 THLQILICGGTGCKASSSQGITENLQKA--IERNGITD--KVDVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII G Sbjct: 98 IIPDNTFYTQVTPEDAEEIISEHIIG 123 >gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5] gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5] Length = 597 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +++IE +I + L + + C G C P++++ Sbjct: 5 RSHVLVCGGTGCTSSGSQRIIEKLEKEIKAQGLED----EVGVVKTGCFGLCALGPIMIV 60 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E + EI+ + G+ Sbjct: 61 YPEGSFYSMVQEEDIPEIVSEHLLKGR 87 >gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14] gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14] Length = 635 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + E + + + V C G C P+V Sbjct: 42 AHLQILICGGTGCKASSSQGITENLQKA--IERNGITD--KVDVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII G Sbjct: 98 IIPDNTFYTQVTPEDAEEIISEHIIG 123 >gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 530 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 25/110 (22%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC + C+ G +KL+ R+++ Q+P +DG V C G C P+VM Sbjct: 22 RHRIGVCTASGCLSCGSDKLLSSLRDQLAQQPQISARADG------VGCMGLCSKGPLVM 75 Query: 152 I------------------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + Y L PE ++ + + P Sbjct: 76 VQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLADSGSGEQTPA 125 >gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] Length = 639 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R HV VCG T C G ++ E + + + + + C G C P++++ Sbjct: 47 RTHVLVCGGTGCTSSGSARIRERLEKE--IEANGLSD--EVCVVKTGCFGLCALGPIMIV 102 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 Y + E + EI+ +G+ ++ Sbjct: 103 YPEGTFYSMVQEEDIPEIVTEH-LLKGNVVKH 133 >gi|22212574|dbj|BAC07503.1| NADH-ubiquinone oxidoreductase 24kDa subunit [Phanerochaete chrysosporium] Length = 56 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213 DLTPE ++++DAF +G+ +PGPQ R +S + GLT+L + G Sbjct: 1 DLTPETTKKVLDAFK--KGEKPKPGPQSGRHTSENSAGLTALT-SEPYGPGAFCT 52 >gi|119513294|ref|ZP_01632334.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414] gi|119462057|gb|EAW43054.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414] Length = 218 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P + + VC + CM RG + + + + + L ++ + C C Sbjct: 111 KTKPAKNKETILVCQKSDCMKRGGKAVCQALEAALSNRGLED----QVTIKGTGCMKKCK 166 Query: 146 NAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P +VM K Y + ++ I+D + +P Sbjct: 167 AGPNIVMPDKTRYSRIPSTQVPAIMDKHFADIREEEQP 204 >gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 595 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +++E + + + +S + C G C P+++I Sbjct: 3 RSHVLVCGGTGCTSSGSLQIMETLKAE--IDKNGLSE--EVSVVQTGCHGLCALGPIMII 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E + EI+ + G+ Sbjct: 59 YPDATFYAMVKNEDIPEIVSEHLLKGR 85 >gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens PCA] gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens PCA] gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit [Geobacter sulfurreducens KN400] Length = 570 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC TPC+ G +++ R D + C G C P+V + Sbjct: 21 RCRIMVCAGTPCLSAGALAVLDALRQA----VEESRLDAEIEAVSTGCMGPCSRGPLVKV 76 Query: 153 G-----KDTYEDLTPERLEEIIDAFSTG-QGDTIRPGP 184 + YE +TPE +I+ + G + T P P Sbjct: 77 AVQGKPEIVYERVTPELARQILYSVVKGRRPPTASPLP 114 >gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 599 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 17/104 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G + + + ++ + D + E C GAC P++++ Sbjct: 7 TILICAGGACISAGEKSVKDALQDLLK----EYALDSVVKIIETGCMGACDLGPIIIVYP 62 Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQ 185 Y+ LTPE + +++ G+ ++ PQ Sbjct: 63 EGIFYQKLTPENVRRVVEEHLLKGRIVEDMLYKGEFGEVKAKPQ 106 >gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] Length = 597 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ VCG T C+ + L + ++ + ++ L + C G C P+V + Sbjct: 5 KMHILVCGGTGCISSQSDVLAQALKDALKEQGLE----NEVKVVLSGCFGFCEQGPIVKV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +TPE EI+ Sbjct: 61 APDNTFYVKVTPEDAGEIVAE 81 >gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] Length = 596 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150 + H+ VCG T C + +I + + ++ L + C G C P+V Sbjct: 4 KMHILVCGGTGCRASASKNIICRLEDCLKERALED----EVQVIATGCFGFCEKGPIVKI 59 Query: 151 MIGKDTYEDLTPERLEEIIDA 171 M Y + PE EEI++ Sbjct: 60 MPDNTFYVQVKPEDAEEIVNE 80 >gi|307267725|ref|ZP_07549170.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii Rt8.B1] gi|306917256|gb|EFN47585.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii Rt8.B1] Length = 84 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + VC + C L+G ++I+ I L + + + C G C V +G Sbjct: 2 VEITVCVGSSCHLKGAYEVIKEFERLIPFYGLENS----VELKAGFCLGRCTEGVTVKVG 57 Query: 154 KDTYEDLTPERLEEIIDAFSTGQ 176 + + P+ + +++A G Sbjct: 58 DRYFTSVAPKDVAGLLEAVKNGN 80 >gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22] gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22] Length = 635 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + + + + + V C G C P+V Sbjct: 42 QHLQILICGGTGCKASSSQGITDNLLKA--IQKNEITD--KVEVITVGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEII+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIINEHIIG 123 >gi|24217226|ref|NP_714709.1| putative cbiX protein [Leptospira interrogans serovar Lai str. 56601] gi|45655717|ref|YP_003526.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24202278|gb|AAN51724.1| ferredoxin-related protein [Leptospira interrogans serovar Lai str. 56601] gi|45602688|gb|AAS72163.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 389 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ VC + C+ +G LI R+ + R SD + C G C P V+I Sbjct: 297 KKHIFVCDSVDCVNQGSISLIHKIRSF--IRKHGRQSD--FRVSKSSCLGRCGEGPTVVI 352 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y+ ++ + +E++D Sbjct: 353 YPDGIWYQRVSEDDAKELVDE 373 >gi|71909767|ref|YP_287354.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB] gi|71849388|gb|AAZ48884.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB] Length = 102 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + HV VC C G + +++I L N G + + C G C N Sbjct: 5 KHHVFVCTNQREGGEQCCNNVGGSDMFAYAKDRIG--ALKLNGAGAVRINKAGCLGRCDN 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P++++ + Y + E +EEII G Sbjct: 63 GPVMVVYPEETWYSFIDKEDVEEIIQEHLIG 93 >gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] Length = 597 Score = 56.7 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G ++LIE N+ + LH + + + C G C P V+I Sbjct: 5 RSHVLVCGGTGCTSSGAQQLIEALNNE--IERLHLS--NEVKVVQTGCLGLCERGPNVVI 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + PE +I + Sbjct: 61 YPEGAYYCHVKPEDARDIAEE 81 >gi|261420011|ref|YP_003253693.1| ferredoxin [Geobacillus sp. Y412MC61] gi|319766826|ref|YP_004132327.1| ferredoxin [Geobacillus sp. Y412MC52] gi|261376468|gb|ACX79211.1| putative ferredoxin [Geobacillus sp. Y412MC61] gi|317111692|gb|ADU94184.1| putative ferredoxin [Geobacillus sp. Y412MC52] Length = 132 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 15/94 (15%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145 G + HV +C C+ G + + R + + H C G C Sbjct: 7 RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 +A ++++ Y +TPE+ +E++ G+ Sbjct: 59 DACVMIVYPDGVWYRLMTPEKAKEVVQRHLQNGE 92 >gi|317133835|ref|YP_004089746.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7] gi|315450297|gb|ADU23860.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7] Length = 83 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153 +Q+C + C L+G E +IE+ + I L ++ C G C V + Sbjct: 2 IIQICVGSSCHLKGSEDMIELLKQAIATHDLE----NEITLAGSFCAGRCNRVGVTVTVD 57 Query: 154 KDTYEDLTPERLEE 167 + Y +TPE E Sbjct: 58 DEVYTGVTPEGFTE 71 >gi|157363820|ref|YP_001470587.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermotoga lettingae TMO] gi|157314424|gb|ABV33523.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermotoga lettingae TMO] Length = 99 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G ++VC + C L+G K+++ + +K G+L C G C + V Sbjct: 23 GDFMLIRVCMGSSCHLKGSYKIVQKIEQ-LRKKYPEIQLYGSL------CFGRCSDGICV 75 Query: 151 MIGKDTYEDLTPERLEEIIDAFST 174 I Y + + +E+II+ T Sbjct: 76 EIDGKLYTHVDDKNIEKIIEEAKT 99 >gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 625 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 16/133 (12%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-----NSDGT-LSWEEVECQGA 143 G + + VC T C+ G K+ E + + +K L+ D ++ C G Sbjct: 20 AGEKMKILVCAGTGCISGGSLKVYEAIKKLLEEKNLYVDIDLYTEDKEGVNVSPSGCHGF 79 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP-AGGLTSL 200 C P+V + Y + E +EI++ T+ G ++R+ G + Sbjct: 80 CQMGPIVRVEPQGYFYVKVKEEDAQEIVEK-------TVEKGEPVERLLYKSHEDGQAFM 132 Query: 201 LDNNSKKRGKKKK 213 +++ GK+ + Sbjct: 133 TEDSIPFYGKQSR 145 >gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1] Length = 562 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 25/110 (22%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC + C+ G +KL+ R+++ Q+P +DG V C G C P+VM Sbjct: 22 RHRIGVCTASGCLSCGSDKLLSSLRDQLEQQPQISARADG------VGCMGLCSKGPLVM 75 Query: 152 I------------------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 + Y L PE ++ + + P Sbjct: 76 VQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLADSGSGEQTPA 125 >gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 631 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C +K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSDKIVESLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y +TPE +EI + G+ Sbjct: 99 NVFYVKVTPEDAKEIAEKHLLKGE 122 >gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8] gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8] Length = 252 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 G R V VCG T C +++ ++++ + + +D + C G C Sbjct: 32 KETGYRKQVLVCGGTGCQSSHSMDVLKALKDELAAQGI---AD-EVLVVRTGCFGLCSLG 87 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P+V++ Y TPE ++ I+D Sbjct: 88 PIVIVYPEGAFYSQATPEGIKRIVDE 113 >gi|119896654|ref|YP_931867.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72] gi|119669067|emb|CAL92980.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72] Length = 106 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 17/96 (17%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGA 143 + HV C T C G + + ++ K G++ + C G Sbjct: 5 KHHVFFCCNQRQGGETSCNDHGASAMQVYAKERTAELGLKGK-----GSVRINKAGCLGR 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 C + P++++ Y + + ++EII+ + G+ Sbjct: 60 CDDGPVLVVYPDNVWYTYVDKDDIDEIINEHLAHGR 95 >gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] Length = 599 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R+ + +CG T C G + L++ + ++ + L + C G C P+V+ Sbjct: 4 KRSQILLCGGTGCTSSGSQTLVKEFKKELIKHELMD----EVELVITGCFGLCELGPVVI 59 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + Y + P + E+++ Sbjct: 60 VYPEGTFYSRVEPSDIPELVEE 81 >gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 630 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + V VCG T C +++I+ + + + ++ +S +S + C G C P+ Sbjct: 36 KKDKIEVLVCGGTGCKSSNSDEIIKNFK--LEIENINLSS--KVSVKMTGCFGFCEKGPI 91 Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171 V I Y ++P+ + EI++ Sbjct: 92 VKIIPDNTFYIHVSPKDVAEIVEE 115 >gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 551 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 +AH+ VCG C+ C ++++ + ++ K + C G C P+ ++ Sbjct: 17 KAHIMVCGGQGCISSKCGEVVDALKESLN-KNGLTE---QVRIILTGCMGPCDMGPVAIV 72 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y L P+ E I++ Sbjct: 73 YPDATFYRRLRPKDAEAIVEE 93 >gi|158320104|ref|YP_001512611.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs] gi|158140303|gb|ABW18615.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs] Length = 83 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 99 CGTTPCMLRGCEKLIEVCR--NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 C + C + + E + ++ + +E C G C P+V I Sbjct: 12 CKSQSCNINKGVDIFEELKMYEELFLEKNIV-----FDVKECGCLGKC-KGPVVKINGKI 65 Query: 157 YEDLTPERLEEIIDAF 172 Y + +++EEI++ Sbjct: 66 YTKVDADKVEEILNEL 81 >gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. 18P13] Length = 597 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 12/118 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +CG T C G K+ + + +I++ L + + C G C N P++++ Sbjct: 3 RSHVLICGGTGCTSSGSLKIYDKLQEEINKNGL----SKEVQVVKTGCFGLCANGPIMIV 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207 Y + E + EI+ + G+ T ++ + G+ SL D + K Sbjct: 59 YPEGTFYSMVNVEDIPEIVSEHLLKGRIVT-----RLVYQETVEEDGIKSLNDTDFYK 111 >gi|77919428|ref|YP_357243.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380] gi|77545511|gb|ABA89073.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380] Length = 82 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C RG ++ +E+ D + C+G C P+ I Sbjct: 2 KKQIVICMGSSCFSRGNDRNLEIIEEF--IARHQL--DAEVDLRGSRCEGRCDQGPVFKI 57 Query: 153 GKDTYEDLTPERLEEIIDA 171 + + EI+ Sbjct: 58 DDKIFSHANQSDIVEILKE 76 >gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402 065] Length = 631 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C +K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y +TPE +EI + G+ Sbjct: 99 NVFYVKVTPEDAKEIAEKHLLKGE 122 >gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] Length = 631 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C +K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y +TPE +EI + G+ Sbjct: 99 NVFYVKVTPEDAKEIAEKHLLKGE 122 >gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] Length = 631 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C +K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA 171 Y +TPE +EI + Sbjct: 99 NVFYVKVTPEDAKEIAEK 116 >gi|313125123|ref|YP_004035387.1| hypothetical protein Hbor_03430 [Halogeometricum borinquense DSM 11551] gi|312291488|gb|ADQ65948.1| uncharacterized conserved protein [Halogeometricum borinquense DSM 11551] Length = 404 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + D + + C G C + P+V + Sbjct: 315 HVAVCTNQTCAASGAATVLEQLRQH-----ARDSDDCDVHFSRSSCLGQCGDGPIVAVYP 369 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y +TP+ E I+ + Sbjct: 370 DSIWYGSVTPDDTERIVSS 388 >gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta proteobacterium NaphS2] Length = 540 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%) Query: 98 VCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GK 154 VC T C G E+++ + +I + ++ C G C P+V+I Sbjct: 9 VCLGTGCQSGGAEEVLSSLKEEIDRLSLGET-----VQVKQTGCHGFCQRGPLVVIEPEG 63 Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIR 181 Y ++ + + EI + G+ R Sbjct: 64 IFYSKVSLDDVSEIAKSLLPGEPPVDR 90 >gi|217076874|ref|YP_002334590.1| hydrogenase-1 [Thermosipho africanus TCF52B] gi|217036727|gb|ACJ75249.1| hydrogenase-1 [Thermosipho africanus TCF52B] Length = 658 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V+VC T C +G ++ + ++++ +N + + C C +P V+ Sbjct: 576 KKTTVKVCLGTSCYSKGSYDILSDLIDVVNKEEWAKN----VEIKGTFCVENCGKSPNVV 631 Query: 152 IGKDTYEDLTPERLEEIIDA 171 I + T E+++E++ Sbjct: 632 IDDTIVSEATTEKVKEVLKK 651 >gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 595 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 13/90 (14%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 R+H+ VCG T C G ++++ + K K ++ + C G C P+ Sbjct: 3 RSHILVCGGTGCTSSGSQQILNALQTEIEKAGLKE-------EVAVVQTGCHGLCALGPI 55 Query: 150 VMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 ++I Y + + + EI+ + G+ Sbjct: 56 MLIYPEGTFYSMVNVDDIPEIVTEHLLKGR 85 >gi|163784277|ref|ZP_02179193.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1] gi|159880453|gb|EDP74041.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1] Length = 111 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV VC C +G +K+ + + KP ++ C G C+ P Sbjct: 8 HVFVCMQNKPPGMPSCGSQGSDKIFMKFQEVLMSKPELMT---KMAVTPTGCLGPCMFGP 64 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V++ Y +TPE +EEII+ G R Sbjct: 65 NVVVYPDAVWYGRVTPEDVEEIIEKHIIGGEPVER 99 >gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] Length = 597 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +CG T C G ++++ R ++ + L D + C G C P+V++ Sbjct: 5 RSHVLICGGTGCTSSGSHEVMDAFREELRNQKL----DREVLIVPTGCHGMCEMGPIVVV 60 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E ++EI+ + G+ Sbjct: 61 YPEGTFYCRVKAEDVKEIVSEHLLKGR 87 >gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme DSM 15981] Length = 1048 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + V VCG C+ C+ + +V + L + C G C P++++ Sbjct: 41 KRQVLVCGGAGCISSHCQDVKDVLFEALKTYKLED----EVEVLVTGCMGTCALGPVILV 96 Query: 153 --GKDTYEDLTPERLEEII 169 Y + PE++E ++ Sbjct: 97 QPDGVFYTKMDPEKVENVV 115 >gi|281358775|ref|ZP_06245250.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] gi|281314730|gb|EFA98768.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] Length = 79 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C RG ++ +++ + + G C G C P + I Sbjct: 2 KHTIVICMGSSCFARGNKRNLKIIEEYLAGHRIDCTLTGR------GCVGKCRTGPNLSI 55 Query: 153 GKDTYEDLTPERLEEIIDA 171 + +E + E L ++++A Sbjct: 56 DGENFERVDSESLIDLLEA 74 >gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P + H+ VC T C +++I+ + K G + C G C Sbjct: 24 DHRPASEQRHLLVCAGTACTSSASQEIIKELDRQ--IKEHKLT--GKAKVFKTGCFGFCQ 79 Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDAFSTG 175 P +V Y + E ++++++ G Sbjct: 80 QGPIVVVQPDNIFYCRVKKENVKDLVEKHIIG 111 >gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7] gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7] Length = 631 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 R + VCG T C + ++ + + + + ++ E C G C P Sbjct: 37 KRCKRY-ITVCGGTGCKSAEGDVIVSNLKAE--VEKAGLSE--EVTVEIAGCFGFCEKGP 91 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 +V I Y +TPE ++I++ G+ Sbjct: 92 IVKISPDNVFYVHVTPEDTQDIVNEHLLKGK 122 >gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422] Length = 541 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 12/96 (12%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 ++ C C+ G + E K + + V C G C AP+V + Sbjct: 20 TRIRCCMAAGCLSSGAVAVKESLE-KTKAEIGLT---DKVEVRSVGCMGLCCQAPLVQVD 75 Query: 154 KD--------TYEDLTPERLEEIIDAFSTGQGDTIR 181 + YE +TPE + I+ + + Sbjct: 76 RSEVQGFIPLLYEKVTPEIVSSIVAELQGDEIKVQK 111 >gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 629 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQG 142 G R + VC T C+ G +K+++ + + L + DG + CQG Sbjct: 19 GGRRVI-VCAGTGCVANGSKKVLDALEKHMGEAGLDVVLEFRPEGHGDG-VRVSHSGCQG 76 Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 C P+V I Y +T + + EI+ + G+ Sbjct: 77 FCQMGPLVTILPENILYTKVTADDVAEIVTETLVAGK 113 >gi|326383960|ref|ZP_08205644.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326197419|gb|EGD54609.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395] Length = 244 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 8/101 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G + + + + L D ++ C C AP+V + Sbjct: 150 HVLVCRGPRCSANGAPETQAALTDALEAQALGD-DDVLVTL--TGCLFPCSQAPVVAVYP 206 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193 Y LT +R+ +++ G G+ IR I +S P Sbjct: 207 DGVWYAGLTADRVATVVEQHLVG-GEPIRG--WIGERASRP 244 >gi|116329721|ref|YP_799440.1| ferredoxin related-protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332604|ref|YP_802321.1| ferredoxin related-protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122614|gb|ABJ80507.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127471|gb|ABJ77563.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 397 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV +C +T C +G LI R+ I + + C G C P +++ Sbjct: 306 HVYICESTNCASKGSISLIHRIRSCIKKHGKQT----DFRVSKSSCLGRCGEGPTLVVYP 361 Query: 153 GKDTYEDLTPERLEEII 169 Y+ + EEI+ Sbjct: 362 DGIWYQRVNENDAEEIV 378 >gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] Length = 595 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C G +K+ E +I + L + + C G C P++++ Sbjct: 3 RSHVLVCGGTGCTSSGSQKIRERLEAEIKRNGLED----EVGVVKTGCFGLCALGPIMIV 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179 Y + E + EI+ + G+ T Sbjct: 59 YPEGSFYAMVKEEDIPEIVSEHLLKGRVVT 88 >gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina] Length = 536 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 23/115 (20%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ + G V+VC C G + + ++ + V C G C Sbjct: 13 YREAEAGVDREVRVCLAASCQSSGAVPVFDALVAELG----DTKPSCK--VKGVGCMGLC 66 Query: 145 VNAPMVMIGKD--------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 P+V + Y D+T + E+I+ + GP ++R+ Sbjct: 67 SAGPLVAVADREADLQGSVLYRDVTADDAEDIVASID---------GPPVERLRC 112 >gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] Length = 628 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+ V VCG T C EK+I + ++ +K + + C G C P++++ Sbjct: 36 RSQVLVCGGTGCTSSNAEKIISTLKEEL-EKQGLTDE---VQVVRTGCFGLCALGPIMIV 91 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTG 175 Y + E + EI++ G Sbjct: 92 YPEGSFYSMVKVEDIPEIVEQHLKNG 117 >gi|75910163|ref|YP_324459.1| hypothetical protein Ava_3959 [Anabaena variabilis ATCC 29413] gi|75703888|gb|ABA23564.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 188 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P A + VC + C+ RG E L+ + ++ E CQ C +AP Sbjct: 96 PSPPPAKIMVCQKSGCVKRGGEGLLSELEKTL-CDRGLL---DKVTIEHTGCQKRCSSAP 151 Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178 ++M+GK Y+ + PE + +++ + T Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTADHP 183 >gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] Length = 626 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R HV VCG T C G +K+IE +I + L + + C G C P++++ Sbjct: 34 RKHVLVCGGTGCTSSGSKKIIEKLHEEIRKNSLE----NEIGVVKTGCFGLCALGPIMIV 89 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E + EI+ + G+ Sbjct: 90 YPEGAFYSMVKEEDIPEIVSEHLLNGR 116 >gi|284052538|ref|ZP_06382748.1| hypothetical protein AplaP_13803 [Arthrospira platensis str. Paraca] gi|291568977|dbj|BAI91249.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 190 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P + + +C + C RG + + +V + + LH + E+ C C Sbjct: 104 QPKPAK--ILICQKSDCRKRGGQAVCQVLEQALCDRGLHD----QVKIEKTGCLKKCKLG 157 Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFST 174 P + M K Y + P + E+I+ Sbjct: 158 PNLVFMPDKAHYTRVKPSDISEVIEKHLA 186 >gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16] gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16] Length = 626 Score = 55.5 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 15/100 (15%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPL-----HR--NSDGTLSWEEVE 139 R V +C T C+ G + + + + ++ ++ + Sbjct: 20 QRRQVLICAGTGCIAGGSLNIYDRLKEECQRRGLNVHVGLLREDETPETKSDDINLKRSG 79 Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 C G C P++ I Y + E ++II+ G+ Sbjct: 80 CHGFCEMGPLLQIEPDGILYTHVQVEDCDDIIEQTLLRGK 119 >gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 624 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + + +C T C+ G K+ + +++I + L GT+S + CQG C Sbjct: 25 QAKKTENKVITICCGTGCLAYGASKIGQSFKDEIKNQGLE----GTVSVKFTGCQGFCER 80 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P+V+I Y+ + PE + I+ Sbjct: 81 GPLVVIRPENILYQRVKPEDVSRIVTE 107 >gi|296126169|ref|YP_003633421.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family, DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily [Brachyspira murdochii DSM 12563] gi|296017985|gb|ADG71222.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family, DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily [Brachyspira murdochii DSM 12563] Length = 89 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++VC C ++G L+E R+ + +SDG L +E+EC C NA V+I Sbjct: 6 KTVIEVCVGLHCSMKGSYALLEAIRSHYDLQIGVPSSDGML-LKEMECMHNCHNAVPVLI 64 Query: 153 GKDTYEDLTPERLEEIIDA 171 + + + + I+A Sbjct: 65 NGTECTKSSFKSVVKYIEA 83 >gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--- 152 V VC T C G ++ + +K L G + + C G C P+V+I Sbjct: 7 VLVCSGTSCFSSGGPEIYNNLLENLEEKGLT----GEVKLVQTGCFGFCEKGPIVVIYQE 62 Query: 153 ---GKDTYEDLTPERLEEIIDA 171 G Y + PE + I++ Sbjct: 63 DNPGGIFYCQVEPEDAQRIVEE 84 >gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] Length = 641 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 14/107 (13%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + +C T C G KL++ RN++ ++ L D + +E C G C +V+I Sbjct: 26 RLCITICCGTGCRALGSVKLVDAFRNELAKQEL----DNQVDIKETGCHGFCEKGSVVVI 81 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 Y + PE +I+D TI+ G ++R + + PA G Sbjct: 82 YPQNICYFHVKPEDAADIVDK-------TIKNGALVERLLYTDPATG 121 >gi|188585465|ref|YP_001917010.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350152|gb|ACB84422.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 77 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC + C L+G +I K+ +K L + + C G C A V + Sbjct: 2 IINVCVGSACHLKGAYDVINSIEKKLEEKNLTD----KVELKAAFCLGECTKAVSVKVDD 57 Query: 155 DTYEDLTPERLEEIIDA 171 L E +E+ I+ Sbjct: 58 GPVHSLALEDVEDFIEK 74 >gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142] gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142] Length = 545 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 ++ C + C+ G E + + N I + L + + V C G C P + I + Sbjct: 34 IRCCIASGCLSCGAESVKKSLDNAIKEAHLEQ----EVEVLGVGCMGICGRGPSIEIDPE 89 Query: 156 T--YEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 T Y ++T E + II + + + P PQ D Sbjct: 90 TTLYHNVTLENIPAIITSLNQTKTSENLP-PQGD 122 >gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 607 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 21/107 (19%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C+ G + + + ++ K D + E C GAC P+ +I Sbjct: 7 TILICAGGACISAGEKSVKDAFEEELR-KYG---LDEVVRVIETGCMGACTLGPIAVIYP 62 Query: 153 GKDTYEDLTPERLEEIIDA------------FSTGQGDTIRPGPQID 187 Y+ LTP+ EI++ + +G +P P++ Sbjct: 63 ESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEG---KPVPRVH 106 >gi|326789577|ref|YP_004307398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] gi|326540341|gb|ADZ82200.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] Length = 102 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHRNSD----GTLSWEEVECQGACV 145 + HV +C T C + G +K +N I + + D G + C G C Sbjct: 4 PKYHVFIC--TSCRINGQQKGFCHSKNSIGIVERFMEEIEDRGLSGDVVINNTGCFGICD 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+V++ Y +++ E +E I++ Sbjct: 62 KGPIVVVYPEGAWYGNVSEEDVERIVEE 89 >gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359] gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359] Length = 645 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P + V+VC T C +G ++++ + + + + G + C C +P Sbjct: 565 PSEEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDME----GKIEVLGTFCVENCGASP 620 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174 V++ + T E++ ++ S Sbjct: 621 NVVVDGKILSEATFEKV---LEELSK 643 >gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM 14796] Length = 537 Score = 55.1 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H VC T C+ G ++ K + E C G+C P +++ Sbjct: 5 RIHALVCAGTQCLAAGGNSFKNALEDE--IKKHDLT--NEVIVVETGCMGSCQLGPRMVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y L PE +EI++ Sbjct: 61 YPEGIMYTKLKPEDGKEIVEE 81 >gi|167816879|ref|ZP_02448559.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia pseudomallei 91] Length = 65 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + + + + D ++ E V C G C +P + I + + ++P R + + DA Sbjct: 1 AHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKMSPARFDALFDA 57 >gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801] Length = 535 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++ C C+ G + ++ + I + L + V C C P+V Sbjct: 20 PRKQLRCCTAAGCLSSGSQAVLNRLKTAIKEGNLE----NEVEISSVGCLRLCSQGPLVE 75 Query: 152 IGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182 I D Y+ +TPE+ IID + + P Sbjct: 76 IDPDKTLYQQVTPEQALAIIDTLNGVEPSQELP 108 >gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 619 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + +C + C+ G K+ E N + K N ++ E C G C P+++ Sbjct: 4 KRIDLLICCGSGCVSAGALKVKEQFHNVLKTK-GLTNE---INIIETGCMGPCDYGPVIV 59 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 I Y+ +TP+ +EEI++ Sbjct: 60 IYPEGVFYKKVTPDDVEEIVNE 81 >gi|257055782|ref|YP_003133614.1| ferredoxin [Saccharomonospora viridis DSM 43017] gi|256585654|gb|ACU96787.1| ferredoxin [Saccharomonospora viridis DSM 43017] Length = 217 Score = 55.1 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 6/95 (6%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P R H+ VC C RG + + + + D ++ + C C + Sbjct: 111 RPPAYRHHLLVCRGPRCSARGADATYRTLVRTL-VRHGLTDEDVLVA--QTGCLFPCNHG 167 Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179 P+ ++ Y + P E ++ + + GQ T Sbjct: 168 PVAVVHPEGVWYGPMHPADTERLVREHLTDGQPLT 202 >gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 599 Score = 54.7 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V +C C+ G + + + + + D + E C GAC PM++I Sbjct: 7 TVLICAGGACISAGEKSVKGIFEETLR----KYSLDNVVRVVETGCMGACDLGPMLVIYP 62 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y+ +TPE I++ Sbjct: 63 EGVFYQKITPENASRIVEE 81 >gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724] gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724] Length = 666 Score = 54.7 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P + V+VC T C L+G K++ + ++ +N + C C NAP Sbjct: 575 PEEEKVKVRVCLGTSCYLKGSYKILSDLIEIVRKEEWAKN----IEVVGTFCTENCSNAP 630 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V+I +++E++ + + + + Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQEGVS 663 >gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 625 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGT--LSW 135 Y + G + VCG T C+ G + E + +H+K L+ + +G + Sbjct: 12 YDELSKMVQGYHMRILVCGGTGCIANGSLDVYEKFKEILHKKGLYTDLKLIQEGKEGVGI 71 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C G C P+V I Y + E +EEI+++ Sbjct: 72 SSSGCHGFCEMGPLVRIEPEGYLYVKVKAEDVEEIVES 109 >gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425] Length = 543 Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 V C +T C ++++ + I K L + V C G C P+V + Sbjct: 20 VRVHCCTSTGCRAANSLEVLQQLQEGITAKGLGD----RVEAVGVGCMGFCGRGPLVQVE 75 Query: 154 --KDTYEDLTPERLEEIIDAFSTGQGDTIR 181 YE++ P+ II A G+ ++ Sbjct: 76 PAGILYEEVKPDEAPSIITALEGGKAKALQ 105 >gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + V VC C+ G + +++ ++++ D ++ + C G C Sbjct: 18 TKERNYKKQVLVCCGVNCLTSGNDIILDKFQSRMK----EMRLDNEINVTKTGCFGFCAR 73 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P+V I K Y ++T + +++IID Sbjct: 74 GPIVEILPDKIFYTEITLDDVDKIIDK 100 >gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] Length = 535 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++ C C+ G + ++ + I + L + V C C P+V Sbjct: 20 PRKQLRCCTAAGCLSSGSQAVLNRLKTAIKEGNLE----NQVEISSVGCLRLCSQGPLVE 75 Query: 152 IGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182 I D Y+ +TPE+ IID + + P Sbjct: 76 IDPDKTLYQQVTPEQALAIIDTLNGVEPRQELP 108 >gi|292493993|ref|YP_003533135.1| colbalt chelase thioredoxin [Haloferax volcanii DS2] gi|291369163|gb|ADE01393.1| colbalt chelase thioredoxin [Haloferax volcanii DS2] Length = 406 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + D + C G C + P+V + Sbjct: 317 HVAVCTNQTCAASGAATVLEQLRQ--GVRDA---DDCDVHVSRSSCLGQCGDGPIVAVYP 371 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y +TP+ + I+ + Sbjct: 372 DSVWYGGVTPDDTDRIVSS 390 >gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH [Geobacter metallireducens GS-15] Length = 635 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ + VC C+ G ++I + ++ ++ + C G C P+VM Sbjct: 24 TKPCISVCAGAGCLASGAAEVIAAFKTELEFH-GLTTE---VNTKGTGCPGFCERGPIVM 79 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-PAGGLTSLLDNNSK 206 I Y + PE + EI+ TI+ +DR+ PA G +L +++ Sbjct: 80 IYPEGICYLKVKPEDVPEIV-------SHTIKEKKVVDRLLYEDPATGTRALRESDIP 130 >gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides ethenogenes 195] Length = 623 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + +C T C G +K+ + ++ + L + C G C P+V+ Sbjct: 29 QKTVIAICCGTGCQAYGAKKVADAFEEELSKAGLGD----KVEVRTTGCHGFCERGPLVV 84 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 I Y+ L + EII+ Sbjct: 85 IRPQNIFYQRLKISDIPEIIEK 106 >gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] Length = 650 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G V +C T C G +LI++ R ++ + L D + C G C P++ Sbjct: 56 GGMRQVLICTGTGCASSGSNRLIDLIREELAAQGL----DEHIQVRSTGCHGFCEQGPIL 111 Query: 151 MI--GKDTYEDLTPERLEEIIDA 171 +I K Y + P + EI+ Sbjct: 112 IIEPDKTFYTKVKPSDIPEIVAR 134 >gi|152982584|ref|YP_001354936.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille] gi|151282661|gb|ABR91071.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille] Length = 106 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 10/84 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ +C C RG + + + K L + G + + C G C P Sbjct: 11 HLFICMNQRDDGRECCAERGAHAAQKHLKAR--VKELGLSRSGEVRVNQSGCLGRCEEGP 68 Query: 149 MVMI--GKDTYEDLTPERLEEIID 170 +++I Y + E L+EIID Sbjct: 69 VIVIYPQGTWYTYVDNEDLDEIID 92 >gi|56420345|ref|YP_147663.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426] gi|56380187|dbj|BAD76095.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426] Length = 132 Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 15/98 (15%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145 G + HV +C C+ G + + R + + H C G C Sbjct: 7 RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 +A ++++ Y +TPER +E++ A G+G +R Sbjct: 59 DACVMIVYPQGIWYRQMTPERAKEVVRAH-LGEGVPMR 95 >gi|218442113|ref|YP_002380442.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp. PCC 7424] gi|218174841|gb|ACK73574.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp. PCC 7424] Length = 193 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VC + C +G + + + + + + + C C P +++ Sbjct: 114 ILVCQKSDCWKKGGKAMCQAIETCL--RDNGLTD--KVQVKLTGCLKRCSKGPNMVVLPD 169 Query: 154 KDTYEDLTPERLEEIIDAFST 174 K Y + P+ + +++ Sbjct: 170 KTNYTRVRPDEIPILLEKHFA 190 >gi|307153358|ref|YP_003888742.1| hypothetical protein Cyan7822_3525 [Cyanothece sp. PCC 7822] gi|306983586|gb|ADN15467.1| conserved hypothetical protein [Cyanothece sp. PCC 7822] Length = 194 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VC + C +G + + + + + L + + C C P ++I Sbjct: 114 ILVCQKSDCWKKGGKDMCQAIESCLKDNGLED----QVQVKRTGCLKRCSKGPNMIILPD 169 Query: 154 KDTYEDLTPERLEEIIDA 171 K Y + P+ + +++ Sbjct: 170 KANYTRVKPQEIPVLLEK 187 >gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 574 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 S G R ++ VCG T C+ +K+++ + + +D + C G C Sbjct: 24 HRSAPGPRMNIMVCGGTGCLSSDSDKVVKNLELILKARGY---AD-EVKVVRTGCFGFCE 79 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P+V I Y ++P+ ++I+D +G+++ Sbjct: 80 QGPIVKIEPDNVFYVRVSPKDAKDIVDEHVA-KGNSVE 116 >gi|297539794|ref|YP_003675563.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301] gi|297259141|gb|ADI30986.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301] Length = 103 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 10/86 (11%) Query: 94 AHVQVC-----GTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C T C + +G E + +++ K L + +G + C C Sbjct: 7 HHVFFCLNQRADGTACCMDKGAEAAFDHMKSR--VKKLGLSGEGKVRINRAGCLDRCGEG 64 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P+++I Y + E ++EII++ Sbjct: 65 PLLVIYPQAIWYTFVDNEDIDEIIES 90 >gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191] gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191] Length = 620 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL----HRNSDGTLS-WEEVECQGACVNAPM 149 + VCG T C+ G +++E + ++ K L + + CQG C P+ Sbjct: 23 RIIVCGGTGCIAGGSLEVLEAFKKELSAKGLNVCTQITDGCRGTYLSKSGCQGFCAAGPL 82 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 V +G Y + + EI++ Sbjct: 83 VSVGDIFYTKVKESDVSEIVEK 104 >gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] Length = 596 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV +C T C+ G +K+ R ++ D + E C G C P+V++ Sbjct: 5 RAHVLICAGTGCVSSGSKKVEAALRAELA----RTGLDKEVKVVETGCHGFCEMGPIVIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + + E++++ Sbjct: 61 YPEGVFYCRVQESDVPELVES 81 >gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 623 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VC T C G K+ + I D + ++ C G C P+V Sbjct: 27 KIYVCVGTGCTANGSRKVYKKFVEVITNKGLDVKVEAEDEHPTVKKTGCCGLCSLGPLVK 86 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 I TY +T + +EEI++ Sbjct: 87 ITPEGITYHHVTVDDVEEIVEK 108 >gi|150020393|ref|YP_001305747.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermosipho melanesiensis BI429] gi|149792914|gb|ABR30362.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermosipho melanesiensis BI429] Length = 74 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 9/78 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C + C L+G +++ + + K L C G C + + I Sbjct: 2 RIRICMGSSCHLKGAYDVVKKIKE-LDIKNLK--------LYGSLCFGKCESGINIEIDG 52 Query: 155 DTYEDLTPERLEEIIDAF 172 + ++PE ++EI+ F Sbjct: 53 ELVSHVSPENVQEIVKKF 70 >gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002] Length = 534 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 18/111 (16%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + +A + ++A T+ ++ C CM G + E +I Sbjct: 1 MTDLAELFEIAEAE-------------QDSHTKIQIRCCTAAGCMSSGSLAVKEELEKQI 47 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-YEDLTPERLEEIID 170 +K L L V C C AP+V + +T ++ + PE EI+D Sbjct: 48 KEKNLGD----RLEVVPVGCMKLCGFAPLVDVSDETCFQQVMPEVAPEIVD 94 >gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 631 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C K++E + +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSYKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y +TPE +EI + G+ Sbjct: 99 NVFYVKVTPEDAKEIAEKHLLKGE 122 >gi|225568914|ref|ZP_03777939.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM 15053] gi|225162413|gb|EEG75032.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM 15053] Length = 81 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 VQ+C + C LRG E +++ + ++ L + C GAC V IG+ Sbjct: 2 KVQICIGSSCHLRGSETIVKTFNRLLKEEKLE----AQVELCGSFCMGACSKGVSVKIGE 57 Query: 155 DTYEDLTPERLEE 167 + Y + PE E+ Sbjct: 58 NIY-HVKPEDAED 69 >gi|297530030|ref|YP_003671305.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3] gi|297253282|gb|ADI26728.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3] Length = 132 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 14/88 (15%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145 G + HV +C C+ G + + R + + H C G C Sbjct: 7 RGMKHHVLICNGGTCLRHGGDDVTMAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 +A ++++ Y +TPER +E++ A Sbjct: 59 DACVMIVYPQGVWYRQMTPERAKEVVRA 86 >gi|167770145|ref|ZP_02442198.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM 17241] gi|167667467|gb|EDS11597.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM 17241] Length = 83 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 9/84 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V VC + C L+G +I V + +I Q+ L ++ C G C N + I Sbjct: 3 VYVCIGSSCHLKGSYDIINVFKQQIAQQHLED----KVNLNASFCLGHCQNGVTIKIDDR 58 Query: 156 TYEDLTPERL-----EEIIDAFST 174 L E +E+++ Sbjct: 59 LVTGLNAENAAEVFQKEVVEGLKE 82 >gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 640 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 +R + VC T C G KL++ R+++ ++ L + +E C G C +V+ Sbjct: 24 SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 I Y + PE ++I+ TI+ G ++R + + PA G Sbjct: 80 IYPQNICYFHVKPEDAADVIEK-------TIKTGELVERLLYADPATG 120 >gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293] gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293] Length = 671 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V+VC T C LRG +K+ +H + D + C C P V Sbjct: 587 DRIPVKVCVGTSCFLRGSQKV---LSKLLHAVEEEK-LDRFYEVQATFCSEQCDKGPTVH 642 Query: 152 IGKDTYEDLTPERLEEIIDAFST 174 IG +++ E++ Sbjct: 643 IGDRVINRADGDQIVELLREMVA 665 >gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 640 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 +R + VC T C G KL++ R+++ ++ L + +E C G C +V+ Sbjct: 24 SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 I Y + PE ++I+ TI+ G ++R + + PA G Sbjct: 80 IYPQNICYFHVKPEDAADVIEK-------TIKTGELVERLLYADPATG 120 >gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 599 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 V +C C+ G E + + ++ + + + E C GAC P+++I Sbjct: 6 TTVLICAGGACISAGEESVKQALESE--IEKYALSE--VVRVVETGCMGACSLGPLMVIY 61 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y+ LTP+ I++ Sbjct: 62 PEGVFYQKLTPQAARRIVEE 81 >gi|154249016|ref|YP_001409841.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Fervidobacterium nodosum Rt17-B1] gi|154152952|gb|ABS60184.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Fervidobacterium nodosum Rt17-B1] Length = 96 Score = 54.0 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + V +C + C L+G + E + I + L + + + C G CVN Sbjct: 8 KNEKFVVSICFGSSCHLKGSYSIAERLKEFIEKNKLENS----VELKGSLCLGMCVNGVN 63 Query: 150 VMIGKDTYEDLTPERLEEIIDAFS 173 ++I ++ E +E + + Sbjct: 64 ILIDDKLLSNINCENIEVVYEYLR 87 >gi|326314920|ref|YP_004232592.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371756|gb|ADX44025.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 131 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 93 RAHVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149 R H+ +C C G + L + K L+ DG L + V C AC P+ Sbjct: 31 RRHLLICTGPRCAQEGQAQALFDSLGEKFKAAGLN---DGELRVKRSRVSCFAACKGGPV 87 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175 + + Y D+TP+ ++ II+ G Sbjct: 88 MCVQPDGTWYYDVTPDNMDRIIEQHLVG 115 >gi|153005413|ref|YP_001379738.1| ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5] gi|152028986|gb|ABS26754.1| Ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5] Length = 134 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 21/121 (17%) Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV VC C +G + + ++++ ++ L D + C AC Sbjct: 13 RHHVFVCENVRPEDDPRGSCGGKGSSAIRKALKDELKRRGL----DKQIRANAAGCLDAC 68 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR------PGPQIDRISS-APAG 195 P +++ Y ++ + EI++ G R G R S+ AP G Sbjct: 69 AFGPSMVVYPEGVWYGHVSVADVPEIVERHLVGGEPVERLRLRRLEGAPATRASAIAPDG 128 Query: 196 G 196 G Sbjct: 129 G 129 >gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 632 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 23/128 (17%) Query: 57 SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116 + + L + + + + VC T C G K+ Sbjct: 12 PADLLRYI-EELKI---------------KREKKLQKTSIYVCVGTGCTASGSRKVYAKF 55 Query: 117 RNKIHQKPLHRN----SDGTLSWEEVECQGACVNAPMV--MIGKDTYEDLTPERLEEIID 170 I+QK L N D ++ C G C P+V M TY ++ +EEI++ Sbjct: 56 VEVINQKGLDVNIEKIDDDDTPVKKTGCCGLCSLGPLVKIMPYGITYSHVSVNDVEEIVE 115 Query: 171 A-FSTGQG 177 G+ Sbjct: 116 RTLMKGEA 123 >gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 596 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 RAH+ +C C+ G E ++ + E C G C P++ Sbjct: 3 ERAHILICAGAACISAGEESFKSALERELK----EAGIYDEVKVIETGCFGTCDLGPVMA 58 Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176 I Y L P+ ++I+ + G+ Sbjct: 59 IYPEGTFYIRLKPQDAKDIVHEHLLKGR 86 >gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110] gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110] Length = 535 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V+ C C+ G + ++E K + + ++ V C C P++ Sbjct: 20 KRKRVRCCTAAGCLSSGSKAIVEKLS--TAVKSANLTEEIEIT--PVGCLRLCGQGPLIY 75 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 I Y+ + PE+ E IID+ + + P Sbjct: 76 IDPDDTLYQQIKPEQAEAIIDSLNGQEQPENLP 108 >gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 603 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 6/85 (7%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 V VC T C + + L + +++ D + + C G C Sbjct: 9 KKPAKERQVLVCRGTGCESQKAKILFDNLEHELKM----LGLDDDIEVKFTGCHGFCQQG 64 Query: 148 PM--VMIGKDTYEDLTPERLEEIID 170 P VM Y ++ PE +EI+ Sbjct: 65 PTVIVMPAGTFYCNVQPEDADEIVK 89 >gi|120608788|ref|YP_968466.1| hypothetical protein Aave_0078 [Acidovorax citrulli AAC00-1] gi|120587252|gb|ABM30692.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 130 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEE--VECQGACVNAPM 149 R H+ +C C G + + + +K +DG L + V C AC P+ Sbjct: 30 RRHILICTGPRCAQEGQ---AQALFDSLGEKFKAAGLNDGDLRVKRSRVSCFAACKGGPV 86 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQID 187 + + Y D+TP ++ II+ G + GP Sbjct: 87 MCVQPDGTWYYDVTPANMDRIIEQHLVGGQPVEDLVFHQGPTGG 130 >gi|303239674|ref|ZP_07326199.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302592845|gb|EFL62568.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 107 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 14/96 (14%) Query: 85 FQLSPVGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 L + HV VC ++ C + +I+ + + + ++ Sbjct: 1 MNLVMRKPKYHVFVCTSSRINGQQKGYCFSKDAVSIIQRFMEE--IEANELTDEVMVT-- 56 Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIID 170 C G C + P+V++ Y+++TP+ + EI++ Sbjct: 57 NTGCFGICSSGPVVVVYPEGVWYKEVTPDDVSEIVE 92 >gi|317133834|ref|YP_004089745.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7] gi|315450296|gb|ADU23859.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7] Length = 79 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 19/84 (22%) Query: 95 HVQVCGTTPCMLRGCEKLIEVC-----RNKIH--QKPLHRNSDGTLSWEEVECQGACVNA 147 V VC + C L+G +++E K+ K C G C Sbjct: 2 KVTVCIGSSCHLKGSRQVVEQLQYLIAEEKLGDKIKLGGT-----------FCMGKCQQG 50 Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171 V + Y +TPE + E + Sbjct: 51 VCVTVDDVFYS-VTPETVGEFFEK 73 >gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2] gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2] Length = 595 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + +CG T C G EK+ + +I ++ L +D + C G C P++++ Sbjct: 5 RTQLMLCGGTGCDSTGSEKVRQALVREIERQGL---AD-EVEIVVTGCNGFCAVGPVMVV 60 Query: 153 G--KDTYEDLTPERLEEIIDA 171 Y+ + PE E+++ Sbjct: 61 QPEGIFYQKIQPEDAPELVEE 81 >gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5] gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5] Length = 1042 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R V VCG C+ C+++ + + L + C G C P++++ Sbjct: 35 RRQVLVCGGAGCISSHCQEVKDALYESLANYQLKD----EVEVLVTGCMGTCSLGPVILV 90 Query: 153 --GKDTYEDLTPERLEEII 169 Y + PE+++ I+ Sbjct: 91 EPDGVFYTQMEPEKVDHIV 109 >gi|225620389|ref|YP_002721646.1| NADH:ubiquinone oxidoreductase (Nuo) subunit E family protein [Brachyspira hyodysenteriae WA1] gi|225215208|gb|ACN83942.1| TRX Fd NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family, DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily [Brachyspira hyodysenteriae WA1] Length = 89 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + ++VC C ++G L+E R+ + +SDG L +E+EC C NA V+I Sbjct: 6 KTVIEVCVGLHCSMKGAYSLLESIRSHYDLEIGVPSSDGML-LKEMECMHNCHNAVPVLI 64 Query: 153 GKDTYEDLTPERLEEIID 170 T + II Sbjct: 65 NGMEC---TKSSFKSIIK 79 >gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 596 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 RAH+ +C C+ G E ++ + E C G C P++ Sbjct: 3 ERAHILICAGAACISAGEESFKSALERELK----EAGIYDEVKIIETGCFGTCDLGPVMA 58 Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176 I Y L P+ ++I+ + G+ Sbjct: 59 IYPEGTFYIRLKPQDAKDIVHEHLLKGR 86 >gi|307688103|ref|ZP_07630549.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 102 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIH--------QKPLHRNSDGTLSWEEVECQGAC 144 + H+ VC T C + G +K ++ + +S+ ++ C G C Sbjct: 5 KHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMIT--NTGCFGIC 60 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P+V++ Y ++T + + EI+++ G+ ++ Sbjct: 61 AQGPVVVVYPEGVWYGNVTEDDVAEIVESHIE-NGEVVK 98 >gi|302875665|ref|YP_003844298.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] gi|302578522|gb|ADL52534.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium cellulovorans 743B] Length = 103 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIH--------QKPLHRNSDGTLSWEEVECQGAC 144 + H+ VC T C + G +K ++ + +S+ ++ C G C Sbjct: 6 KHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMIT--NTGCFGIC 61 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P+V++ Y ++T + + EI+++ G+ ++ Sbjct: 62 AQGPVVVVYPEGVWYGNVTEDDVAEIVESHIE-NGEVVK 99 >gi|302337815|ref|YP_003803021.1| hypothetical protein Spirs_1300 [Spirochaeta smaragdinae DSM 11293] gi|301635000|gb|ADK80427.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293] Length = 83 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C + C +RG L+ + + L SD ++ + C C P V+I Sbjct: 2 TIEICMGSSCYVRGNRDLLAALEQFLETEGL---SD-RVALKGCLCTDCCGQGPNVIIDG 57 Query: 155 DTYEDLTPERLEEII 169 + Y + P + +++ Sbjct: 58 EIYHEAAPGSIIDLL 72 >gi|119942|sp|P07324|FER2_CLOPA RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=2FeCpFd gi|40563|emb|CAA79492.1| [2Fe-2S] ferredoxin [Clostridium pasteurianum] Length = 102 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 19/104 (18%) Query: 90 VGTRAHVQVCGTTPCMLRG----------CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 V + H+ VC T C L G +++E ++ + L + Sbjct: 2 VNPKHHIFVC--TSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSS----EVMVNNTG 55 Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C P+V++ Y ++T + +EEI+++ G+ ++ Sbjct: 56 CFGICSQGPIVVVYPEGVWYGNVTADDVEEIVESHIE-NGEVVK 98 >gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Synechococcus sp. WH 5701] Length = 528 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++ C + C+ RG L+ + V C G C P + Sbjct: 4 LRCCASAGCLARGSGALMGALE--TAISRGELGD--RIQLRPVGCLGPCSQGPLLALDPD 59 Query: 154 KDTYEDLTPERLEEIIDAFS--------TGQGDTIRPGPQIDRI--SSAP 193 D Y + P+ E ++ A + + Q ++ P S P Sbjct: 60 GDLYAGVDPQDAETLVAALARRQHQDCDSAQAPPLKWTPARGERLDLSEP 109 >gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 592 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 10/100 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V +C T C+ G K+ E R ++ K + C G C P+V+I Sbjct: 3 KVLICAGTGCISSGSPKVTEKFREELS-KRGIT----DIEVYNTGCHGFCEQGPIVIIEP 57 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRI 189 K Y + + + EII+ G + PQ+D+ Sbjct: 58 DKTFYCRVEVDDVPEIIEKHLLGGQIVEKVLFHEPQVDKK 97 >gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120] gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120] Length = 544 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 ++ C C+ + + + + + L G + V C C P+V + Sbjct: 20 VQIRCCTAAGCLSANSQAVQQQLEQAVKAEGLE----GEVQVSGVGCMRLCCQGPLVEVE 75 Query: 154 K--------DTYEDLTPERLEEIIDAFSTGQGD 178 YE +TPE II A + Sbjct: 76 GSGEEKTKQRLYEKVTPEDASAIIGALKGKEAQ 108 >gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS] Length = 626 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + +C T C G +K+ + ++ + L + C G C P+V+I Sbjct: 34 TVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 89 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y+ L + EII+ Sbjct: 90 PQNIFYQRLKISDIPEIIEK 109 >gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 572 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 84 QFQLSPVG--TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 Q + G +AH+ VCG C+ C ++++ R + + SD + C Sbjct: 19 QIRYGKPGVLHKAHIMVCGGQGCISSKCAEVVDAIREALKKHNF---SD-HVKVVLTGCM 74 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEII 169 G C P+ ++ Y L P+ E I+ Sbjct: 75 GPCDMGPVAVVFPDAVFYRRLKPKDAEAIV 104 >gi|254414361|ref|ZP_05028128.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC 7420] gi|196179036|gb|EDX74033.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC 7420] Length = 104 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 11/95 (11%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 V VC C G ++ D + +CQG C P V + Sbjct: 13 VLVCQHRSCQAEGSADVLAAFE--------EVAKDTDFKIKGTDCQGQCSCGPTVRVVPE 64 Query: 154 KDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + Y + P + I++ G+ + P+I Sbjct: 65 ETWYYRVQPSDVRRIVEQHLKEGKPVDEKLNPRIH 99 >gi|332527507|ref|ZP_08403559.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2] gi|332111914|gb|EGJ11892.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2] Length = 108 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R H+ C C G ++ + C+ + K G + + C C Sbjct: 5 RHHIFFCLNERPAGESSCARHGAQEAFDHCKAR--VKAEGLAGAGGVRVNKAGCLDRCAG 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG-DTIRPGPQIDR 188 P+ ++ Y + E ++EI+++ G+ + + P + R Sbjct: 63 GPVAVVYPEGTWYTYVDREDIDEIVESHLKNGRPVERLMLPPDVGR 108 >gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 613 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +CG T C+ G +++ + R ++ L + E C G C P+++I Sbjct: 24 RILICGGTGCVSSGSKEIQDELRKELEVNNLKS----EVKIVETGCHGFCEKGPIIIIYP 79 Query: 153 GKDTYEDLTPERLEEIID-AFSTGQ 176 + Y ++ PE ++E+++ G+ Sbjct: 80 EEVFYCEVDPEDIKELVEKQLLEGE 104 >gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106] gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106] Length = 538 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 6/93 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + C +T C + + + + L + V C G C P+V I Sbjct: 21 RIHCCTSTGCQAANSLAVKKEMEQAVKKAGLQD----KVQVVGVGCMGFCGKGPIVEIEP 76 Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185 + YE + PE I++ + G+ PQ Sbjct: 77 EGLQYETVKPEVAASIVEGLNGGEVKATPGDPQ 109 >gi|330945791|gb|EGH47199.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. pisi str. 1704B] Length = 56 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 Q F+ SE + + Y R +A I L Q++ GWV AI Sbjct: 6 IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYA 56 >gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] Length = 596 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E++I R + C G C P+V MI Sbjct: 8 ILVCGGTGCRASRSEEIIAALRRAL----DRTGESERTRVIRTGCFGFCEQGPIVKMIPD 63 Query: 154 KDTYEDLTPERLEEII 169 Y + PE EEI+ Sbjct: 64 NTFYVSVKPEDAEEIV 79 >gi|150391253|ref|YP_001321302.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF] gi|149951115|gb|ABR49643.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF] Length = 102 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 14/94 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C+ +G ++ +I + R DG + C G Sbjct: 4 PKHHIFVCSSSRINGEQKGFCLQKGAVDIVNSFMEEI----MERELDGDVMVTNTGCIGI 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C P+V++ Y +T + +EEI+D+ G Sbjct: 60 CSKGPIVIVYPEGVWYGSVTADDVEEIMDSHIEG 93 >gi|218295408|ref|ZP_03496221.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus aquaticus Y51MC23] gi|218244040|gb|EED10566.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus aquaticus Y51MC23] Length = 367 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 10/82 (12%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145 P G H+ +C C RG L+ + P + C G C Sbjct: 271 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEDLRDLGP-------WVQLTPTPCLGRCG 323 Query: 146 NAPMVM--IGKDTYEDLTPERL 165 P+++ Y L+PE Sbjct: 324 KGPVLIAYPEGVVYGGLSPEDA 345 >gi|298490010|ref|YP_003720187.1| hypothetical protein Aazo_0568 ['Nostoc azollae' 0708] gi|298231928|gb|ADI63064.1| conserved hypothetical protein ['Nostoc azollae' 0708] Length = 194 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%) Query: 87 LSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 L P + + C + CM G + + ++ ++ + L D ++ + C Sbjct: 94 LKPKPEAAKKQTILFCQKSGCMKSGGKAVCQMLEKELSDRGL----DNKVNIKGTGCMKN 149 Query: 144 CVNAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C P +VM K Y + ++ +ID +T P Sbjct: 150 CKAGPNLVMPDKTRYSRIQARQVPAVIDKHLGKNMETEVP 189 >gi|162457511|ref|YP_001619878.1| hypothetical protein sce9225 [Sorangium cellulosum 'So ce 56'] gi|161168093|emb|CAN99398.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 127 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%) Query: 89 PVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P R + VC P C RG E + + + ++ L + S C Sbjct: 2 PQRKRY-LFVCVNRRPDGVPKGSCAQRGAEGIHVQLKAALAERGLAKVEARACS---ASC 57 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176 C P++ + Y +TP + EI+DA ++G+ Sbjct: 58 LDVCWAGPVIAVEPDGYFYGRVTPADVPEIVDALASGR 95 >gi|261885720|ref|ZP_06009759.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 78 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F F+ E +NE+ + R + V+P L Q +G + + + L + + Sbjct: 2 KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGIIDAKDVLYLEKTLCIRSMF 59 Query: 75 VLEIATFYTQF 85 E FY+ F Sbjct: 60 YAEAIGFYSMF 70 >gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180] Length = 538 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 13/97 (13%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 Q++ V+VC C G ++E + G+ + V C G Sbjct: 11 AQYRNEDAHIEREVRVCVAASCQSSGSLPVLEALK-----SACDTQGAGSCKVKGVGCMG 65 Query: 143 ACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171 C P+V + Y D+TP+ +I+ + Sbjct: 66 LCSAGPLVAVADKDCALNESVLYRDVTPDDAPDIMAS 102 >gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 774 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + VC PC G +++ ++ ++ + + + CQG C P++ Sbjct: 24 GAKVRASVCCGLPCTALGSQEIARELADESARQGIE------VDIVKTGCQGLCQKGPLM 77 Query: 151 MIG--KDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + Y+ + PER E+I + G G +R Sbjct: 78 QVEPHGYFYQKVKPERAGEMISK-TMGSGQPVR 109 >gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment culture clone BF] Length = 595 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 H+ +C T C+ ++ ++I + L + C G C P++++ Sbjct: 6 HILICRGTACVSSESIEVQRELEDQIKSRGLEE----QVRVVHTGCFGFCARGPVMVVLP 61 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y ++ E + EII++ Sbjct: 62 QGTLYCEVRVEDVGEIIES 80 >gi|50842146|ref|YP_055373.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes KPA171202] gi|289426196|ref|ZP_06427942.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289426919|ref|ZP_06428645.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|50839748|gb|AAT82415.1| conserved protein, putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes KPA171202] gi|289153361|gb|EFD02076.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289160008|gb|EFD08186.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|313791559|gb|EFS39677.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313802354|gb|EFS43580.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313808224|gb|EFS46698.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313812493|gb|EFS50207.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313818990|gb|EFS56704.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313820820|gb|EFS58534.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313822418|gb|EFS60132.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313825787|gb|EFS63501.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|313839122|gb|EFS76836.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314925577|gb|EFS89408.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314959895|gb|EFT03997.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314962284|gb|EFT06385.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314979250|gb|EFT23344.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314986834|gb|EFT30926.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314989393|gb|EFT33484.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315077371|gb|EFT49431.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315083998|gb|EFT55974.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315085201|gb|EFT57177.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315089007|gb|EFT60983.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|315107158|gb|EFT79134.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1] gi|327330958|gb|EGE72702.1| hypothetical protein HMPREF9337_01525 [Propionibacterium acnes HL096PA3] gi|327331165|gb|EGE72905.1| hypothetical protein HMPREF9344_01820 [Propionibacterium acnes HL097PA1] gi|327447449|gb|EGE94103.1| hypothetical protein HMPREF9568_00745 [Propionibacterium acnes HL013PA2] gi|327455220|gb|EGF01875.1| hypothetical protein HMPREF9584_01176 [Propionibacterium acnes HL092PA1] gi|328752943|gb|EGF66559.1| hypothetical protein HMPREF9563_02196 [Propionibacterium acnes HL020PA1] gi|332675071|gb|AEE71887.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes 266] Length = 206 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ C C G L ++K+ D + C C +AP++++ Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHAPLIVV 179 Query: 153 --GKDTYEDLTPERLEEIIDAF 172 LT + L+ I++ Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200 >gi|91788628|ref|YP_549580.1| hypothetical protein Bpro_2766 [Polaromonas sp. JS666] gi|91697853|gb|ABE44682.1| conserved hypothetical protein [Polaromonas sp. JS666] Length = 117 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 93 RAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149 + H+ +C C G ++L + +K LH DG + + V C AC P+ Sbjct: 14 KRHLLICTGPRCTQDGASQELFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPV 70 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175 + + Y ++TP ++ IID G Sbjct: 71 MCVQPDGTWYYNVTPANMDRIIDQHLVG 98 >gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 600 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VC T C+ G + L + ++ K G + E C G C P++++ Sbjct: 7 RSHVLVCTGTGCVSSGAKDLKTILDEELAAKD----MSGEIKIVETGCHGFCEKGPIMIV 62 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y ++ + ++EI+D Sbjct: 63 YPEGVFYCEVNEKDVKEIVDE 83 >gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12] gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12] Length = 666 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P + V++C T C ++G K++ + ++ +N + C C NAP Sbjct: 575 PEEEKIKVRICLGTSCYIKGSYKILSDLIEVVRKEDWAKN----VEVVGTFCTENCSNAP 630 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V+I +++E++ + + + + Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQEGVS 663 >gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 634 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMI 152 H+ +CG C + +++ + L+ D + C G C P+ +M Sbjct: 39 HILICGGPGCKASNSDNILKAFNEE--ITRLNLQED--VKVIMTGCFGFCAKGPVIEIMP 94 Query: 153 GKDTYEDLTPERLEEIIDA 171 K Y +T E ++EII++ Sbjct: 95 DKVFYIKVTEEDVKEIIES 113 >gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + + +C TT C G ++ + + +I + + + + CQG C AP+V Sbjct: 26 GEKIRILIC-TTGCRALGAWEVYKTFQAEIEMQ----SLKDRVEVVDTGCQGLCTRAPVV 80 Query: 151 MIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 + Y +T + EI+ T+ G I+R+ G + S + Sbjct: 81 TVEPMGVFYGRVTESDVHEIVSR-------TVLKGEIIERLCCTEDGKRVPYRKDISFYK 133 Query: 209 GKKK 212 +KK Sbjct: 134 KQKK 137 >gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 623 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 A + +C T C G +K+ + ++ + L + C G C P+V+I Sbjct: 31 AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 86 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y+ L + EII+ Sbjct: 87 PQNIFYQRLKISDIPEIIEK 106 >gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 623 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 A + +C T C G +K+ + ++ + L + C G C P+V+I Sbjct: 31 AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 86 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y+ L + EII+ Sbjct: 87 PQNIFYQRLKISDIPEIIEK 106 >gi|86607084|ref|YP_475847.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab] gi|86555626|gb|ABD00584.1| putative iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab] Length = 184 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148 G + V VC + C RG +++ + + P + + V C C P Sbjct: 97 GRKGVVLVCQKSDCCRRGAMAVMQALQAHLAAYP-ET-----IRVQGVGCMKDCKRGPNV 150 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + + K Y ++P+ + ++ P Sbjct: 151 VFLPDKARYSGVSPQGIPALLQRHFPLADPVPSP 184 >gi|317132513|ref|YP_004091827.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3] gi|315470492|gb|ADU27096.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3] Length = 103 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 14/87 (16%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + HV VC + C G ++ + D ++ C G C Sbjct: 6 KHHVFVCTSCRQNGTQKGKCFANGANDVVMKFQEV--IDDEDIRDDVMVT--NCGCFGLC 61 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII 169 N +V + Y+ +T + +EEI+ Sbjct: 62 DNGVVVAVYPDGVFYKHVTVDDVEEIV 88 >gi|225405725|ref|ZP_03760914.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme DSM 15981] gi|225042749|gb|EEG52995.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme DSM 15981] Length = 104 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +G + + C + C L+G ++IE + + Q L G + C G C Sbjct: 20 KRRKLGMKVTI--CIGSACHLKGSREIIEKLQQLVAQNGL----SGKVDLNGSFCSGNCD 73 Query: 146 NAPMVMIGKDTYEDLTPERLEE 167 + V + + L PE EE Sbjct: 74 HGVCVTVEDQLFS-LKPEDTEE 94 >gi|319796227|ref|YP_004157867.1| ferredoxin-like protein [Variovorax paradoxus EPS] gi|315598690|gb|ADU39756.1| ferredoxin-like protein [Variovorax paradoxus EPS] Length = 117 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 89 PVGTR-AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 P G H+ C C + ++ + C+ K K + G + + C Sbjct: 9 PSGYYGRHIFFCLNERKNGEDSCAMHNAQEGFDRCKAK--VKEAGLSGPGKVRVNKAGCL 66 Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C P+ ++ + Y + + ++EI+++ G+ Sbjct: 67 DRCAGGPVAVVYPEAVWYTFVDADDIDEIVESHLKNGE 104 >gi|325679206|ref|ZP_08158797.1| hypothetical protein CUS_5482 [Ruminococcus albus 8] gi|324109135|gb|EGC03360.1| hypothetical protein CUS_5482 [Ruminococcus albus 8] Length = 80 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 5/77 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC + C L+G +++E + I ++ L + C G C V + Sbjct: 2 KVTVCIGSSCHLKGSRQVVEQLQYLIAKEDLGD----KVKLGGTFCMGKCQQGVCVTVDD 57 Query: 155 DTYEDLTPERLEEIIDA 171 + Y ++PE + E + Sbjct: 58 EFYS-VSPETVGEFFEK 73 >gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit [Desulfobulbus propionicus DSM 2032] Length = 538 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G H VC C E++I R+ I ++ L +S +V C G C P+V Sbjct: 19 GFTHHFLVCAGLGC--PRNEEIIAALRSVIAERGLQE----QISVRKVGCMGLCALGPIV 72 Query: 151 MIG--KDTYEDLTPERLEEIIDAF 172 ++ + Y+ +TPE E+++ + Sbjct: 73 LVQPEEIFYQAVTPEDAEDLVASL 96 >gi|53802527|ref|YP_112790.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath] gi|53756288|gb|AAU90579.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath] Length = 108 Score = 52.8 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 16/99 (16%) Query: 89 PVGTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P ++ V VC T C G + + + + G + C Sbjct: 2 PKPSKH-VFVCAQTRPPGHPRGSCGQLGSTAVFQTFMQQF--EAGQL--YGQFALTSTGC 56 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 G C P V++ Y ++P + EII+ G+ Sbjct: 57 LGTCDLGPTVLVYPEGVMYSKVSPADVSEIIEEHLKNGR 95 >gi|312797427|ref|YP_004030349.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454] gi|312169202|emb|CBW76205.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454] Length = 111 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 21/105 (20%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +FY + HV C C G + + E + + K L +G Sbjct: 3 SFY----------QHHVFFCLNQRDPGERPSCANCGAQAMQEYAKRR--IKALGLAGEGK 50 Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 + + C C P++++ Y + ++EIID+ G Sbjct: 51 VRINKAGCLDRCELGPVLVVYPDATWYTYVDEADIDEIIDSHLVG 95 >gi|9955119|pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus gi|9955120|pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus gi|24158927|pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus gi|24158928|pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus Length = 110 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158 C RG ++ + KI P C AC+ P+V++ Y Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNACMMGPVVVVYPDGVWYG 75 Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181 + PE ++EI++ G R Sbjct: 76 QVKPEDVDEIVEKHLKGGEPVER 98 >gi|12644516|sp|O66511|FER2_AQUAE RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=AaFd4 Length = 111 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158 C RG ++ + KI P C AC+ P+V++ Y Sbjct: 22 SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNACMMGPVVVVYPDGVWYG 76 Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181 + PE ++EI++ G R Sbjct: 77 QVKPEDVDEIVEKHLKGGEPVER 99 >gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] Length = 595 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R ++ VCG T C +++ + + + + +D + + C G C P+V I Sbjct: 4 RNYILVCGGTACESSRSDQIYQNLIEECKAQGI---AD-EVQVVKTGCFGFCEQGPIVKI 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y +TPE +E+I Sbjct: 60 LPEDSFYVKVTPEDAKELISE 80 >gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 636 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + +C + C G EK+ + ++ L D C G C P+V+ Sbjct: 24 KKPCITLCSGSACHATGSEKVADAILAELESHGLKDQVD----IRRTGCHGFCEQGPIVV 79 Query: 152 I--GKDTYEDLTPERLEEII 169 + +Y + PE + EI+ Sbjct: 80 VYPEGISYLKVKPEDVCEIV 99 >gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] Length = 640 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 +R + VC T C G KL++ R ++ ++ L + D +E C G C +V+ Sbjct: 24 SRPCITVCCGTGCRALGSVKLVDAFRAELAKQGLESSVD----IKETGCHGFCEKGSVVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176 I Y + PE +++ TG+ Sbjct: 80 IYPQNICYFHVKPEDAADVVAKTIKTGE 107 >gi|237654532|ref|YP_002890846.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T] gi|237625779|gb|ACR02469.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T] Length = 107 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 16/90 (17%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143 + HV C + C +L + + + K G++ + C G Sbjct: 5 KHHVFFCCNQRQPGESCCNDHKASELQTYAKERTAALGLKGK-----GSVRVNKAGCLGR 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C + P++++ Y + E ++EIID+ Sbjct: 60 CDDGPVIVVYPDNVWYTYVDKEDIDEIIDS 89 >gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 636 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + +C + C G EK+ + ++ L D C G C P+V+ Sbjct: 24 KKPCITLCSGSACHATGSEKVADAILAELESHGLKDQVD----IRRTGCHGFCEQGPIVV 79 Query: 152 I--GKDTYEDLTPERLEEII 169 + +Y + PE + EI+ Sbjct: 80 VYPEGISYLKVKPEDVCEIV 99 >gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] Length = 597 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+ V +CG T C G K+ + + + + C G C P++++ Sbjct: 3 RSQVLICGGTGCTSSGSVKIAKRLQEE--IDKNGLTD--EVMVVRTGCFGLCALGPIMIV 58 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E + EI+ + G+ Sbjct: 59 YPEGTFYSMVKEEDIAEIVSEHLLKGR 85 >gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 635 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + E + + + ++ C G C P+V Sbjct: 42 KHLQILICGGTGCKASASHVIAEKLQQAL--EKNKITD--QVNVITTGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y +TPE EEI+ G Sbjct: 98 IIPDNTFYTQVTPEDAEEIVSEHIIG 123 >gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 625 Score = 52.4 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 20/111 (18%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR------NSDGTLSWEEVECQGACVNAP 148 + VC T C+ G +K+ E P + D + ++ CQG C P Sbjct: 25 RILVCSGTGCVATGSQKIYEKFMEIAKDAPGVTIEFGPHDKDAHVGVKKTGCQGVCELGP 84 Query: 149 MVMI--GKDT--YEDLTPERLEEI----------IDAFSTGQGDTIRPGPQ 185 +V I G D Y + E +EI I+ +G + GP+ Sbjct: 85 LVRIQKGDDVIQYTKVQIEDCQEIFEKSVQGNETIERLLYQKGGKVSRGPE 135 >gi|295130232|ref|YP_003580895.1| hypothetical protein HMPREF0675_3726 [Propionibacterium acnes SK137] gi|291376839|gb|ADE00694.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313763904|gb|EFS35268.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313771394|gb|EFS37360.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313811310|gb|EFS49024.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313814810|gb|EFS52524.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313828131|gb|EFS65845.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|313830937|gb|EFS68651.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313833363|gb|EFS71077.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|314915108|gb|EFS78939.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314918738|gb|EFS82569.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314920539|gb|EFS84370.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314932213|gb|EFS96044.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314954671|gb|EFS99077.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314958507|gb|EFT02609.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314968282|gb|EFT12381.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|314973823|gb|EFT17919.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314976474|gb|EFT20569.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314983413|gb|EFT27505.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|315080116|gb|EFT52092.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315096441|gb|EFT68417.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|315099008|gb|EFT70984.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315100913|gb|EFT72889.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315108130|gb|EFT80106.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] gi|327326847|gb|EGE68630.1| hypothetical protein HMPREF9338_01721 [Propionibacterium acnes HL096PA2] gi|327442950|gb|EGE89604.1| hypothetical protein HMPREF9570_02455 [Propionibacterium acnes HL043PA1] gi|327445074|gb|EGE91728.1| hypothetical protein HMPREF9571_02059 [Propionibacterium acnes HL043PA2] gi|327450053|gb|EGE96707.1| hypothetical protein HMPREF9581_02500 [Propionibacterium acnes HL087PA3] gi|327455394|gb|EGF02049.1| hypothetical protein HMPREF9586_01431 [Propionibacterium acnes HL083PA2] gi|328752721|gb|EGF66337.1| hypothetical protein HMPREF9579_02263 [Propionibacterium acnes HL087PA1] gi|328759360|gb|EGF72976.1| hypothetical protein HMPREF9588_00205 [Propionibacterium acnes HL025PA2] gi|328760314|gb|EGF73885.1| hypothetical protein HMPREF9343_01978 [Propionibacterium acnes HL099PA1] Length = 206 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ C C G L ++K+ D + C C +AP++++ Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHAPLIIV 179 Query: 153 --GKDTYEDLTPERLEEIIDAF 172 LT + L+ I++ Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200 >gi|315103067|gb|EFT75043.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] Length = 206 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ C C G L ++K+ D + C C AP++++ Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYAPLIVV 179 Query: 153 --GKDTYEDLTPERLEEIIDAF 172 LT + L+ I++ Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200 >gi|282854371|ref|ZP_06263708.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282583824|gb|EFB89204.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|314922939|gb|EFS86770.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] gi|314966391|gb|EFT10490.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314980870|gb|EFT24964.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315090186|gb|EFT62162.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315093539|gb|EFT65515.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|327326990|gb|EGE68771.1| hypothetical protein HMPREF9341_02065 [Propionibacterium acnes HL103PA1] Length = 206 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ C C G L ++K+ D + C C AP++++ Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYAPLIVV 179 Query: 153 --GKDTYEDLTPERLEEIIDAF 172 LT + L+ I++ Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200 >gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 509 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 15/104 (14%) Query: 70 MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVCRNKIH-QKPLHR 127 M + +FY + S +A VC + CM G ++ L + + K+ K Sbjct: 1 MGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKLQEKLGDDKVGE- 57 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 + C G C + Y ++++II Sbjct: 58 ----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 91 >gi|291543752|emb|CBL16861.1| NADH dehydrogenase subunit E [Ruminococcus sp. 18P13] Length = 79 Score = 52.4 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC + C L+G +++E + I QK L + C C N V Sbjct: 2 KIKVCIGSSCHLKGSRQVVEQLQALIAQKKLED----QIELAGTFCMNNCQNGVCVSCDD 57 Query: 155 DTYEDLTPERLEE 167 Y LTP+ +++ Sbjct: 58 QIYS-LTPDTVDQ 69 >gi|269469007|gb|EEZ80575.1| ferredoxin [uncultured SUP05 cluster bacterium] Length = 103 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 21/111 (18%) Query: 79 ATFYTQFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 +FYT H+ C C G +++ ++K + +G Sbjct: 1 MSFYT----------KHIFFCNNVRKDGKACCSQLGAKQMYRHAKDK--CRDEGMLGEGK 48 Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + E C G C + P+ ++ Y+ + + ++EII G G+ ++ Sbjct: 49 IGISESRCLGRCEHGPVAVVYPDNVWYQYIDEDDVDEIIAEHLIG-GNAVK 98 >gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 633 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVN 146 + + VC T C+ G K+ E R + + D + + C G C Sbjct: 32 KDPAKTEIVVCHGTGCLAAGSPKVTEAMRKALA----EADLDIEVRPGIKTTGCHGFCSR 87 Query: 147 APMVMIG--KDTYEDLTPERLEEIIDA 171 P+V+I Y+ + PE + EII + Sbjct: 88 GPLVIIQPEGIFYQKVKPEDVGEIIQS 114 >gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 614 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + V T + G +++ +I ++ L + EV C G C P++M+ Sbjct: 25 KLLVSMGTCGIAAGTAAVLKAIHQEIAERNLE----NAIEVSEVGCMGLCHAEPVIMLAD 80 Query: 155 D------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-DRISSAPA 194 + Y D+TPE++ I+ +I PG + +R P Sbjct: 81 EATGEKLIYGDVTPEQVPAIL----AAGTSSIAPGTRTLERNWYYPE 123 >gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase [Candidatus Kuenenia stuttgartiensis] Length = 552 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + + +C TT C G ++ + + +I + + + + CQG C AP+V Sbjct: 26 GEKIRILIC-TTGCRALGAWEVYKTFQAEIEMQ----SLKDRVEVVDTGCQGLCTRAPVV 80 Query: 151 MIG--KDTYEDLTPERLEEII 169 + Y +T + EI+ Sbjct: 81 TVEPMGVFYGRVTESDVHEIV 101 >gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] Length = 631 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VCG T C +K++ R +I++ L + C G C P+V I D Sbjct: 43 ILVCGGTGCKSADSDKIVANLREEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98 Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176 Y + PE +EI + G+ Sbjct: 99 NVFYVKVKPEDAKEIAEKHLLKGE 122 >gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 597 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ VCG T C +++E ++ C G C P+V I Sbjct: 4 KMHILVCGGTGCSASASHEIVEELNKEL--VAHDLTDFAK--VVVTGCFGFCERGPIVKI 59 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P +EII+ Sbjct: 60 IPDNTFYTRVKPSDAKEIIEE 80 >gi|332971311|gb|EGK10274.1| 2Fe-2S ferredoxin [Desmospora sp. 8437] Length = 139 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 14/99 (14%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPL---HRNSDGTLSWEEVECQGACV 145 G + H+ +C C G E++ + R +I H H C G C Sbjct: 6 TGVKVHLLLCNGASCTRNGAEEVTKAIRQEIQHLDLGKEVHTTK--------TFCNGRCK 57 Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+V+ + Y+ + R +E++ S ++ P Sbjct: 58 YGPIVVKYPAGEWYQQMDAGRGKELVRKLSQPGMESPVP 96 >gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 552 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + C +TPC+ G + E + I + L + C G C P++ + Sbjct: 21 RCRLLCCASTPCISSGGTAVYEAVKQAIEAEGLQ----AEVEAVATGCVGPCSRGPLITV 76 Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQ 176 YE +TPE I+D + Sbjct: 77 KMEGREDVVYEQVTPEMAARILDKHLRSK 105 >gi|158334978|ref|YP_001516150.1| hypothetical protein AM1_1815 [Acaryochloris marina MBIC11017] gi|158305219|gb|ABW26836.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 186 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAP-- 148 + +++C + C RG K++ + + D + + + C G C P Sbjct: 107 QKGKIRICQKSSCRKRGSRKVLTALNTAL-----QTSGRDKEIQLQPMGCVGKCKAGPNL 161 Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171 +V+ K Y + P+ + I+ Sbjct: 162 VVLPDKTRYTRVKPKNITHILQQ 184 >gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] Length = 597 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 14/92 (15%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 + VC T C+ G + + ++ + + C G C P+V Sbjct: 7 KILVCCGTSCIANGALDVADAIEQELAARGINGVE------VCVTRTGCSGECEQGPIVR 60 Query: 151 -MIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 M Y +T I+D+ +G+ ++ Sbjct: 61 FMPRDLMYYRVTVRDAAAIVDSL---EGEPVK 89 >gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC BAA-613] Length = 1033 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGA 143 + R V VCG C+ C ++ + K + D + C G Sbjct: 17 YLRRQKSYRRQVLVCGGAGCISSNCGEVRDAL-----IKSVSTYKLDDEVKVMVTGCMGT 71 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C P++++ Y + PE+ E+++ Sbjct: 72 CAMGPVILVEPEGIFYTKMNPEKAEDVVAR 101 >gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301] Length = 534 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 ++ C T C G E + + + I + L V C G C P+V Sbjct: 21 RLRCCTATGCRANGAEAVFKAVQQTIADQNLGD----RCEAVSVGCLGLCGAGPLVQCDP 76 Query: 154 -KDTYEDLTPERLEEIIDA 171 Y D+ P++ +++ A Sbjct: 77 SDRLYSDIRPDQAADLVAA 95 >gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301] gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942] Length = 534 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 ++ C T C G E + + + I + L V C G C P+V Sbjct: 21 RLRCCTATGCRANGAEAVFKAVQQTIADQNLGD----RCEAVSVGCLGLCGAGPLVQCDP 76 Query: 154 -KDTYEDLTPERLEEIIDA 171 Y D+ P++ +++ A Sbjct: 77 SDRLYSDIRPDQAADLVAA 95 >gi|197123053|ref|YP_002135004.1| ferredoxin [Anaeromyxobacter sp. K] gi|196172902|gb|ACG73875.1| putative ferredoxin [Anaeromyxobacter sp. K] Length = 112 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 14/99 (14%) Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV VC C +G E + + ++ ++ L + C AC Sbjct: 4 RHHVFVCENHRDPSDPRGACGNKGSEAIRAALKAEVARRGLK----AQVRVNSAGCLDAC 59 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P +++ Y ++P + EI++ G R Sbjct: 60 AFGPSIVVYPEGVWYGHVSPADVPEIVERHLVGGTPVER 98 >gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] Length = 626 Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGAC 144 R + VC T C+ G + + I +K L D T+ ++ C G C Sbjct: 23 QRKQILVCAGTGCVAGGSLNIYRRFKEIIKEKGLEVTLELKEEPHDNTIGLKKSGCHGFC 82 Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA 171 P++ I + Y ++ + EEII+ Sbjct: 83 EMGPLIRIEPEGWLYIKVSIDDCEEIIEK 111 >gi|148270502|ref|YP_001244962.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermotoga petrophila RKU-1] gi|147736046|gb|ABQ47386.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein [Thermotoga petrophila RKU-1] Length = 69 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%) Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 + C L+G +++ + + +K C G C V I + Sbjct: 1 MGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDGQLFSR 52 Query: 160 LTPERLEEIIDA 171 +TPE EEI+ Sbjct: 53 VTPENAEEILKR 64 >gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 626 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 86 QLSPVGT-RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + P G+ + + VCG C G L E R I + L ++ V C G C Sbjct: 27 RFPPPGSGQRRLLVCGGLTCGAAGSFSLPEAFRKAIEKAGLEE----QVTVTLVGCLGLC 82 Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P +VM + Y L E + I++ G R Sbjct: 83 EEGPLALVMPERVLYCRLKLEDVAAIVEEHFKGGKPVER 121 >gi|310779013|ref|YP_003967346.1| hypothetical protein Ilyop_1217 [Ilyobacter polytropus DSM 2926] gi|309748336|gb|ADO82998.1| conserved hypothetical protein [Ilyobacter polytropus DSM 2926] Length = 81 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC + C ++G E++I++ + I + + ++ + C G C A V + Sbjct: 2 VLKVCVGSACHIKGSEQVIQILQKCIKESDMED----RITLKASFCLGNCTEAVSVTVDD 57 >gi|288817810|ref|YP_003432157.1| ferredoxin [Hydrogenobacter thermophilus TK-6] gi|288787209|dbj|BAI68956.1| ferredoxin [Hydrogenobacter thermophilus TK-6] gi|308751408|gb|ADO44891.1| Sucraseferredoxin family protein [Hydrogenobacter thermophilus TK-6] Length = 110 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQGACVNAPMVMI--GKDTY 157 C +G + + K+ P C G C P +++ Y Sbjct: 21 SCAEKGSRDIYQKFMEKLQMDPE------LFMSVVITPTGCLGPCGMGPTMVVYPDGVWY 74 Query: 158 EDLTPERLEEIID 170 ++ PE +EEI++ Sbjct: 75 GNVRPEDVEEIVN 87 >gi|212550910|ref|YP_002309227.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549148|dbj|BAG83816.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 100 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 22/96 (22%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142 + VC + C +G L++ + + + C Sbjct: 6 YTILVCNSYRVTGDAQGFCNKQGAVSLLQYITEECADRNIDAVVTT---------TACLS 56 Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176 C P+V++ Y +T ++++EI+DA G+ Sbjct: 57 VCSQGPVVVVQPNNYWYGGVTKDKVDEILDALEEGK 92 >gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001] Length = 606 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 19/90 (21%) Query: 95 HVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 H++ C + C G E L R+++ ++ + V C C P+V Sbjct: 5 HLRCCAASGCRSAGAEALRSALLAARDQLGGAAD------AVTIKPVGCLRLCGRGPLVA 58 Query: 152 IGK----------DTYEDLTPERLEEIIDA 171 + + + Y DLTP + +++A Sbjct: 59 LDRTGEAPGTASTELYADLTPAQAPALLEA 88 >gi|86157642|ref|YP_464427.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C] gi|220917843|ref|YP_002493147.1| ferredoxin [Anaeromyxobacter dehalogenans 2CP-1] gi|85774153|gb|ABC80990.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C] gi|219955697|gb|ACL66081.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-1] Length = 112 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 14/99 (14%) Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV VC C +G E + + ++ ++ L + C AC Sbjct: 4 RHHVFVCENHRDPSDPRGACGNKGSEAIRAALKAEVARRGLK----AQVRVNGAGCLDAC 59 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P +++ Y ++P + EI++ G R Sbjct: 60 AFGPSIVVYPEGVWYGHVSPADVPEIVERHLVGGTPVER 98 >gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 584 Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIG 153 ++V + M G K++E + ++ R+ + + E C G C P+V +I Sbjct: 2 KIRVGLGSCGMAAGGNKVMECIQQEL------RSRNLDIPVEPTGCIGLCFFEPLVDVID 55 Query: 154 KD---TYEDLTPERLEEIIDAFSTGQGD 178 D TY ++TPE + +II++ G+ Sbjct: 56 GDDVYTYGNVTPEMIPKIIESHVIGKKP 83 >gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067] gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067] Length = 596 Score = 51.7 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C G +++ ++ + L + E C G C + P+V++ Sbjct: 5 RAHVLVCGGTGCKANGSKEIQLTFARELQKFGLQD----EVMVVETGCHGFCEHGPLVIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + PE ++ I++ Sbjct: 61 YPEGTFYCSVKPENVKTIVEE 81 >gi|284164276|ref|YP_003402555.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena turkmenica DSM 5511] gi|284013931|gb|ADB59882.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena turkmenica DSM 5511] Length = 410 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 7/77 (9%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + D ++ C G C + PMV + Sbjct: 321 HVAVCMNQTCAEMGSPSVLERLRQEARDSDHC---DARIT--RSSCLGRCGDGPMVAVYP 375 Query: 153 GKDTYEDLTPERLEEII 169 Y D+ + E I+ Sbjct: 376 DGIWYGDVASQDAERIV 392 >gi|302339490|ref|YP_003804696.1| ferredoxin 2Fe-2S [Spirochaeta smaragdinae DSM 11293] gi|301636675|gb|ADK82102.1| ferredoxin, 2Fe-2S [Spirochaeta smaragdinae DSM 11293] Length = 102 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLT 161 C +G L+ + ++ R DG +S C C P++ I Y + Sbjct: 24 CEKKGAIGLVPYIQEELA----DRGMDG-VSVAMTSCLNMCDRGPVMAIFPDNIWYGGVD 78 Query: 162 PER-LEEIIDAFSTGQ 176 E +++I+DA G+ Sbjct: 79 SEDVVDQILDALEGGR 94 >gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 597 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V VC T C + LI+ R +I L +S C G C P V Sbjct: 2 ERIQVLVCAGTGCSIGNSGALIDAFRTEIKSMGLES----EVSVLRTGCLGLCGVGPNVS 57 Query: 152 I--GKDTYEDLTPERLEEII 169 I Y+ + E ++EI+ Sbjct: 58 IYPDNIIYKSVKVEDVKEIV 77 >gi|213029189|ref|ZP_03343636.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 34 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 G C P +MI +DT+ LTPE + E+++ + Sbjct: 3 GNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 34 >gi|239814020|ref|YP_002942930.1| hypothetical protein Vapar_1013 [Variovorax paradoxus S110] gi|239800597|gb|ACS17664.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 118 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%) Query: 87 LSPV--GTRAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQ 141 + P G + H+ VC C G + L + +K K N G L + V C Sbjct: 5 VKPKIGGYKRHLLVCTGPRCSPDGASQDLFDSLGDKF--KAAGLNE-GALRVKRSRVGCF 61 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 AC P++ + Y ++TPE ++ I+ G Sbjct: 62 AACKGGPVMCVQPDGTWYYNVTPENMDRILSQHLVG 97 >gi|134096153|ref|YP_001101228.1| putative ferredoxin [Herminiimonas arsenicoxydans] gi|133740056|emb|CAL63107.1| Putative ferredoxin [Herminiimonas arsenicoxydans] Length = 106 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ +C C +G + + + K L + G + + C G C P Sbjct: 11 HLFICMNQRDDGRECCAEKGAHAAQKHLKAR--VKELGLSRSGDVRINQSGCLGRCEEGP 68 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175 +++I Y + ++EIID G Sbjct: 69 VLVIYPQGTWYTYVDNHDIDEIIDEHLVG 97 >gi|220931030|ref|YP_002507938.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168] gi|219992340|gb|ACL68943.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168] Length = 666 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 VQVC T C L G L++ + + + + E C C NAP V +G Sbjct: 589 VPVQVCVGTCCYLHGSYDLLQGLIER--VEEEGLSD--KVDIEATFCFENCKNAPSVKVG 644 Query: 154 KDTYEDLTPERLEEIIDAFS 173 + E +++I+ Sbjct: 645 NQLLSKV--ESVDDILKHLK 662 >gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Clostridium thermocellum ATCC 27405] gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 597 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C K+I +I + + + C G C P++++ Sbjct: 5 RAHVLVCGGTGCTSSNSNKIITELEEQIARNGIQ----NEVKVVRTGCFGLCAEGPIMVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E ++EI++ Sbjct: 61 YPEGAMYTMVKVEDVKEIVEE 81 >gi|326201305|ref|ZP_08191177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988873|gb|EGD49697.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 86 Score = 51.7 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC + C L+G ++I + I L + + C G C V IG Sbjct: 4 IYVCVGSSCHLKGSYQIINCFQRMIKDNNLES----RVELKASFCMGHCTTGVCVKIGDT 59 Query: 156 TYEDL 160 Y D+ Sbjct: 60 FYGDV 64 >gi|302038080|ref|YP_003798402.1| ferredoxin [Candidatus Nitrospira defluvii] gi|300606144|emb|CBK42477.1| Ferredoxin, 2Fe-2S [Candidatus Nitrospira defluvii] Length = 108 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 19/108 (17%) Query: 92 TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVEC 140 + H+ VC C +G +L+ + P ++ C Sbjct: 4 PKYHILVCTNARPPGHPKPSCGGQGSAQLLMSFNMGLMQRGIMPGEV----LVT--GSSC 57 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186 G C P V++ Y +T + I+D G + P Sbjct: 58 LGPCEQGPTVVVYPDNTWYSKVTEADVATILDEHIKGGKPAAKLNPDS 105 >gi|169236276|ref|YP_001689476.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1] gi|167727342|emb|CAP14128.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1] Length = 407 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + + L C G C + P V + Sbjct: 318 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 372 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y+ + P+ I+ + Sbjct: 373 DGVWYQRVDPDDAGRIVSS 391 >gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 650 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 V VC T C + L + + +I+++ L N + + C G C P+VM+ Sbjct: 33 TQVMVCSGTACTSADSQILRQALQEEIYKRGLEEN----IKLFKTGCFGFCQQGPIVMVH 88 Query: 153 -GKDTYEDLTPERLEEIIDA 171 G Y + PE ++++A Sbjct: 89 PGGVFYCQVRPEDTGKLVEA 108 >gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] Length = 628 Score = 51.3 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VCG T C +IE + +I + L ++ C G C P+V Sbjct: 33 DKRDILVCGGTGCTSSESLLIIEKLKEEIKKAGLEDHA----MVHLTGCFGFCAMGPIVK 88 Query: 152 I--GKDTYEDLTPERLEEIIDAFST 174 + Y + P+ EEI+++ Sbjct: 89 VYPDNVFYVHVKPDDAEEIVNSHIA 113 >gi|126656491|ref|ZP_01727752.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110] gi|126622177|gb|EAZ92884.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110] Length = 198 Score = 51.3 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 87 LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139 ++P G + + +CG + C RG KL ++ + + ++ E+ Sbjct: 104 VNPQGKTCPKKGKILLCGKSDCAKRGGRKLHQLLEQTLCNLGLQDH-------VTIEKTS 156 Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171 CQ C AP ++M GK + P+ + E+++ Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKADPKNIAELLEE 190 >gi|323706139|ref|ZP_08117708.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium xylanolyticum LX-11] gi|323534583|gb|EGB24365.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium xylanolyticum LX-11] Length = 81 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VC + C L+G +I + I + + + C G C+ A V Sbjct: 2 VITVCVGSSCHLKGSYDVINKLKEMIKNYGIED-------KVELKADFCMGNCLRAVSVK 54 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ 176 I + P +E+ + G+ Sbjct: 55 IDDGKCLSVKPNNVEKFFKEYVLGE 79 >gi|16554498|ref|NP_444222.1| ferredoxin [Halobacterium sp. NRC-1] Length = 397 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + + L C G C + P V + Sbjct: 308 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 362 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y+ + P+ I+ + Sbjct: 363 DGVWYQRVDPDDAGRIVSS 381 >gi|266619057|ref|ZP_06111992.1| conserved domain protein [Clostridium hathewayi DSM 13479] gi|288869440|gb|EFD01739.1| conserved domain protein [Clostridium hathewayi DSM 13479] Length = 79 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++I + + + L + C G CVN V + Sbjct: 2 RVTICIGSACHLKGSREIIAQLQQLVKENHLES----KVDLNGSFCSGNCVNGVCVTVDG 57 Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176 + L PE +E D G+ Sbjct: 58 QLFS-LKPEDTKEFFDKEIKGR 78 >gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 533 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 + EIAT + T+ ++ C C+ E + + I L + Sbjct: 5 ELKEIAT-----KSREKQTKIRIRCCSAAGCLSSEGETVKKNLTTAIAAAGLEE----KV 55 Query: 134 SWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFST 174 V C C P+V + YE +TP+++ +I+ Sbjct: 56 EVCGVGCMKFCGRGPLVAVDDRNQLYEFVTPDQVGDIVKKLQK 98 >gi|284052702|ref|ZP_06382912.1| hypothetical protein AplaP_14633 [Arthrospira platensis str. Paraca] gi|291570234|dbj|BAI92506.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 80 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 11/75 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + +C C +G K+++ + + G C G+C N PMV++ Sbjct: 9 IIICHNRTCRKQGAAKVLQAFQAA-NFSVGVITPSG--------CLGSCGNGPMVLVLPE 59 Query: 154 KDTYEDLTPERLEEI 168 + Y+ +TPE++ I Sbjct: 60 QVWYDHVTPEQVPSI 74 >gi|55978241|ref|YP_145297.1| cobalamin biosynthesis protein CbiX [Thermus thermophilus HB8] gi|55773414|dbj|BAD71854.1| cobalamin biosynthesis protein CbiX [Thermus thermophilus HB8] Length = 367 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 10/92 (10%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145 P G H+ +C C RG L+ + P + C C Sbjct: 271 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEGLRDLGP-------LVQLTPTPCLSRCG 323 Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTG 175 P+++ Y L+PE + + A G Sbjct: 324 KGPVLIAYPEGVVYGGLSPEDVLPLRKAHLEG 355 >gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfatibacillum alkenivorans AK-01] gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like) [Desulfatibacillum alkenivorans AK-01] Length = 1044 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 15/106 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC T C G ++++ ++++ ++ + + C G C AP++ Sbjct: 24 ARNVIHVCM-TGCRAYGAAEVLQSLQDEVKRQGME----KEVEVRSTGCHGFCARAPVIA 78 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APA 194 + Y+++ PE EII G TI+ IDR++ P Sbjct: 79 LDPLGVQYQEVGPEDAAEII-------GQTIKQNRLIDRLAYKEPK 117 >gi|332968954|gb|EGK08000.1| 2Fe-2S ferredoxin [Desmospora sp. 8437] Length = 137 Score = 51.3 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 14/99 (14%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPL---HRNSDGTLSWEEVECQGACV 145 G + H +C C G E++ + R +I H H + C G C Sbjct: 4 TGMKVHFLLCNGASCTRNGAEEVTKAIRQEIQHLDLGKEVHTTK----TL----CNGRCK 55 Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 + P+V+ + Y+ + R +E++ ++ P Sbjct: 56 HGPIVVQYPAGEWYQQMDAGRGKELVRKLMQPGMESPVP 94 >gi|46255086|ref|YP_005998.1| cbiX protein [Thermus thermophilus HB27] gi|46197935|gb|AAS82345.1| cbiX protein [Thermus thermophilus HB27] Length = 409 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 10/92 (10%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145 P G H+ +C C RG L+ + P + C C Sbjct: 313 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEGLRDLGP-------LVQLTPTPCLSRCG 365 Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTG 175 P+++ Y L+PE + + A G Sbjct: 366 KGPVLIAYPEGVVYGGLSPEDVLPLRKAHLEG 397 >gi|222481341|ref|YP_002567577.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum lacusprofundi ATCC 49239] gi|222454717|gb|ACM58980.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum lacusprofundi ATCC 49239] Length = 408 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + + C G C + PMV + Sbjct: 319 HVAVCTNQTCAADGAPAVLEGLRQ-----AARDSEECDARITRSSCLGRCGDGPMVAVYP 373 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y D+ + + I+ + Sbjct: 374 DGVWYGDVDGDDADRIVSS 392 >gi|67921465|ref|ZP_00514983.1| unknown protein [Crocosphaera watsonii WH 8501] gi|67856577|gb|EAM51818.1| unknown protein [Crocosphaera watsonii WH 8501] Length = 185 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152 + VC + C RG + + + ++ ++ L SD + + C C P +VM Sbjct: 107 KILVCQKSSCWKRGGQSVCQRLEKELEKQGL---SD-RIKIKLTGCLKQCKKGPNVVVMP 162 Query: 153 GKDTYEDLTPERLEEII 169 K Y + P + E++ Sbjct: 163 HKARYSQIKPGEVGELL 179 >gi|302387730|ref|YP_003823552.1| hypothetical protein Closa_3402 [Clostridium saccharolyticum WM1] gi|302198358|gb|ADL05929.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 79 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++I + ++ D + C G CVN V + Sbjct: 2 RVTICIGSACHLKGSREIIAQLQTL----VKEQHLDDKVDLNGSFCCGDCVNGVCVTVDG 57 Query: 155 DTYEDLTPERLEEIIDA 171 Y L PE E D Sbjct: 58 QLYS-LKPEDTREFFDK 73 >gi|296132219|ref|YP_003639466.1| Sucraseferredoxin family protein [Thermincola sp. JR] gi|296030797|gb|ADG81565.1| Sucraseferredoxin family protein [Thermincola potens JR] Length = 102 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 14/94 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C + +L+E +I ++ L + C G Sbjct: 4 PKYHIFVCTSSRPTGQQKGFCHAKASVELMEAFMEEIEERGLGS----EVFVTNTGCLGI 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C P+V++ Y +T + +EEI++ G Sbjct: 60 CEKGPIVIVYPDNVWYGAVTVDDVEEIMEEHIEG 93 >gi|172035462|ref|YP_001801963.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142] gi|171696916|gb|ACB49897.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142] Length = 198 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 87 LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139 ++P G + + +CG + C RG KL ++ + + ++ E+ Sbjct: 104 VNPRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTLCNLGLQDH-------VTIEKTS 156 Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171 CQ C AP ++M GK + P+ + E+++ Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKANPKNIAELLEE 190 >gi|57864802|gb|AAW56977.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142] Length = 198 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 87 LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139 ++P G + + +CG + C RG KL ++ + + ++ E+ Sbjct: 104 VNPRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTLCNLGLQDH-------VTIEKTS 156 Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171 CQ C AP ++M GK + P+ + E+++ Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKANPKNIAELLEE 190 >gi|325972700|ref|YP_004248891.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy] gi|324027938|gb|ADY14697.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy] Length = 88 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 12/88 (13%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA-- 147 + HVQ+C T C ++G L+ + + L + E V C G C +A Sbjct: 3 KKEKVHVQICVGTACFVQGGADLLLY-NDFLDPAVLC-----SCEIEGVSCLGGCKDAQS 56 Query: 148 ----PMVMIGKDTYEDLTPERLEEIIDA 171 P V IG+ Y + E+L +++ Sbjct: 57 KDRPPYVRIGEKVYGSVNQEKLCKLLAE 84 >gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] Length = 631 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + VCG T C +K++E NK+ + + C G C P+V I Sbjct: 43 ILVCGGTGCKSSDSDKIVENLNAEINKLGIQD-------EVKVSITGCFGFCEKGPIVKI 95 Query: 153 GKD--TYEDLTPERLEEIIDA-FSTGQ 176 D Y + PE +EI + G+ Sbjct: 96 NPDNVFYVKVKPEDAKEIAEKHLLKGE 122 >gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + +C + C+ G ++I R +I + L D C G C P+V+ Sbjct: 24 DKPCISICAGSGCVASGALEVIAAFREEIEKHGLAATVDTK----GTGCPGFCERGPLVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 I + Y +TPE + EII Sbjct: 80 IYPEEICYLQVTPEDVPEIIAQ 101 >gi|83313658|ref|YP_423922.1| ferredoxin [Magnetospirillum magneticum AMB-1] gi|82948499|dbj|BAE53363.1| Ferredoxin [Magnetospirillum magneticum AMB-1] Length = 113 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 21/102 (20%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQ 141 R HV +C C RG E L E + K+ K + C Sbjct: 13 RVHVFICTNRRPDDNKRGSCAGRGSEALREHMKDAQKKLGLKD--------VRINSAGCL 64 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C P+++I Y + L+EI++ G G R Sbjct: 65 DRCGKGPVMVIYPEGIWYSFNSVADLDEILETHIVGGGRVER 106 >gi|34497956|ref|NP_902171.1| ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC 12472] gi|34103811|gb|AAQ60172.1| probable ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC 12472] Length = 102 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 95 HVQVCGTT--PCMLR----GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C G L+ ++K K L +G + + C G C + P Sbjct: 7 HVFICCNQRDACQDCCNNHGSSALLGYMKDK--VKALGLAGEGKIRVNKAGCLGRCDDGP 64 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++++ + Y + + ++EI+ Sbjct: 65 VMVVYPEETWYTFVDKDDIDEIVSE 89 >gi|297831032|ref|XP_002883398.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329238|gb|EFH59657.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 103 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62 V E++S YP + Q AVIPLL AQ+Q GW+ +A+ Sbjct: 1 VKEILSYYPSNYKQFAVIPLLDLAQQQHGGWLPVSAMN 38 >gi|86608900|ref|YP_477662.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557442|gb|ABD02399.1| iron-sulfur cluster-binding protein, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 216 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 12/101 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MV 150 + V VC + C RG +++ + G++ + V C C P + Sbjct: 124 KGKVLVCQKSDCYRRGAGAVMQALNAHLAAYS------GSICVQGVGCMKDCKRGPHVVF 177 Query: 151 MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 M K Y ++P+ + +++ P PQ ++ Sbjct: 178 MPDKARYSGVSPQGIPALLERHF----PLSSPQPQEVEAAA 214 >gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] Length = 628 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VCG T C ++IE + + + + + C G C P+V Sbjct: 33 DKRDILVCGGTGCTSSDSLQIIENLKAE--IEKAGLSDHAMVHL--TGCFGFCAMGPIVK 88 Query: 152 I--GKDTYEDLTPERLEEIIDAFST 174 + Y + PE EI+ + Sbjct: 89 VYPDNVFYVHVKPEDAAEIVQSHIA 113 >gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Synechococcus sp. PCC 7335] Length = 534 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 ++ C C+ + + H + + V C G C P+V I Sbjct: 18 RIRCCTVGGCLSANGLAVKTALQ--TAVADHHLAE--QVKVKGVGCLGLCSKGPLVQIDP 73 Query: 153 GKDTYEDLTPERLEEII 169 YE +TPE+ +++ Sbjct: 74 DGRLYEQVTPEQATQLV 90 >gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] Length = 592 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + VC T C+ ++ + +H L + C G C P+V+I Sbjct: 3 RILVCAGTGCVASHSRQVTARLKAALHAHHLEE----RFQVDNTGCHGFCEQGPLVIIEP 58 Query: 153 GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + E +E I+ + G+ Sbjct: 59 EGILYCRVREEDVEAIVTEHLEQGR 83 >gi|76812106|ref|YP_332031.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b] gi|167813980|ref|ZP_02445660.1| ferredoxin family protein [Burkholderia pseudomallei 91] gi|167822502|ref|ZP_02453973.1| ferredoxin family protein [Burkholderia pseudomallei 9] gi|167892587|ref|ZP_02479989.1| ferredoxin family protein [Burkholderia pseudomallei 7894] gi|167909304|ref|ZP_02496395.1| ferredoxin family protein [Burkholderia pseudomallei 112] gi|254187922|ref|ZP_04894434.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237] gi|76581559|gb|ABA51034.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b] gi|157935602|gb|EDO91272.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237] Length = 105 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 6 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 64 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98 >gi|160940740|ref|ZP_02088082.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC BAA-613] gi|158436260|gb|EDP14027.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC BAA-613] Length = 79 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++I + + + C G C + V + Sbjct: 2 KVTICIGSACHLKGSREIISKLQKL--VDENGLSD--KVDLNGAFCSGNCDHGVCVTVEG 57 Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176 + Y L PE EE + G+ Sbjct: 58 ELYS-LKPEDTEEFFENEIKGR 78 >gi|296444629|ref|ZP_06886593.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b] gi|296257897|gb|EFH04960.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b] Length = 110 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 15/98 (15%) Query: 84 QFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + PV + HV C C G + L + + K+ +PL D +S Sbjct: 1 MLEDLPVVFKYHVFTCFQQRPPGHPRGSCTTSGAKPLWDRLQAKLGAQPL---PD--VSM 55 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C G C P++++ Y TPE ++EI+ + Sbjct: 56 TATACLGFCRAGPLMVVYPQGVWYAPRTPEDIDEIVQS 93 >gi|194336996|ref|YP_002018790.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1] gi|194309473|gb|ACF44173.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1] Length = 102 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 16/97 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC TP C + LI +++ ++ C Sbjct: 4 PKHHILVCASFRAQGTPQGICHKKESLSLIPYIESELS-DRGMT----DVTVSATGCLNL 58 Query: 144 CVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177 C P++++ Y ++ E+++EI+DA G+ Sbjct: 59 CEKGPVLVVYPENFWYGEVDGEEKIDEILDALEEGEA 95 >gi|167736876|ref|ZP_02409650.1| ferredoxin family protein [Burkholderia pseudomallei 14] Length = 109 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 10 RHHVFFCLNRREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 68 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102 >gi|53718046|ref|YP_107032.1| putative ferredoxin [Burkholderia pseudomallei K96243] gi|126440126|ref|YP_001057489.1| ferredoxin, putative [Burkholderia pseudomallei 668] gi|126454789|ref|YP_001064738.1| ferredoxin family protein [Burkholderia pseudomallei 1106a] gi|134279496|ref|ZP_01766208.1| ferredoxin family protein [Burkholderia pseudomallei 305] gi|167717857|ref|ZP_02401093.1| ferredoxin family protein [Burkholderia pseudomallei DM98] gi|167844084|ref|ZP_02469592.1| ferredoxin family protein [Burkholderia pseudomallei B7210] gi|167901084|ref|ZP_02488289.1| ferredoxin family protein [Burkholderia pseudomallei NCTC 13177] gi|167917337|ref|ZP_02504428.1| ferredoxin family protein [Burkholderia pseudomallei BCC215] gi|217419647|ref|ZP_03451153.1| ferredoxin family protein [Burkholderia pseudomallei 576] gi|226193683|ref|ZP_03789286.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9] gi|237810640|ref|YP_002895091.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346] gi|242314153|ref|ZP_04813169.1| ferredoxin family protein [Burkholderia pseudomallei 1106b] gi|254181993|ref|ZP_04888590.1| ferredoxin family protein [Burkholderia pseudomallei 1655] gi|254196590|ref|ZP_04903014.1| ferredoxin family protein [Burkholderia pseudomallei S13] gi|254261131|ref|ZP_04952185.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a] gi|254295958|ref|ZP_04963415.1| ferredoxin family protein [Burkholderia pseudomallei 406e] gi|52208460|emb|CAH34394.1| putative ferredoxin [Burkholderia pseudomallei K96243] gi|126219619|gb|ABN83125.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 668] gi|126228431|gb|ABN91971.1| ferredoxin family protein [Burkholderia pseudomallei 1106a] gi|134248696|gb|EBA48778.1| ferredoxin family protein [Burkholderia pseudomallei 305] gi|157806245|gb|EDO83415.1| ferredoxin family protein [Burkholderia pseudomallei 406e] gi|169653333|gb|EDS86026.1| ferredoxin family protein [Burkholderia pseudomallei S13] gi|184212531|gb|EDU09574.1| ferredoxin family protein [Burkholderia pseudomallei 1655] gi|217396951|gb|EEC36967.1| ferredoxin family protein [Burkholderia pseudomallei 576] gi|225934261|gb|EEH30245.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9] gi|237505352|gb|ACQ97670.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346] gi|242137392|gb|EES23794.1| ferredoxin family protein [Burkholderia pseudomallei 1106b] gi|254219820|gb|EET09204.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a] Length = 109 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 10 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 68 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102 >gi|10581045|gb|AAG19841.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 199 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + + L C G C + P V + Sbjct: 110 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 164 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y+ + P+ I+ + Sbjct: 165 DGVWYQRVDPDDAGRIVSS 183 >gi|74316297|ref|YP_314037.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC 25259] gi|74055792|gb|AAZ96232.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC 25259] Length = 105 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 11/93 (11%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + HV C C G + + + + K K + N +G C C Sbjct: 7 KHHVFFCTNQRDDGAKCCGAAGGQHMRDYLKKK--IKQANLNGEGKCRINTAGCMDRCDE 64 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI +A G+ Sbjct: 65 GPVLVVYPEGVWYTYVDESDIDEIFEAHLKEGR 97 >gi|291523454|emb|CBK81747.1| NADH dehydrogenase subunit E [Coprococcus catus GD/7] Length = 79 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G +I+ I R + + C G C N V I Sbjct: 2 TITICIGSSCHLKGSRTIIQKLEELIT----ERQLNDKIELNGSFCMGECSNGVCVKIND 57 Query: 155 DTYEDLTPERLEEIID 170 + + ++PE + + Sbjct: 58 ELFS-VSPETVNTFFE 72 >gi|325972703|ref|YP_004248894.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy] gi|324027941|gb|ADY14700.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy] Length = 86 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V++C + C RG + ++ + ++ L +D ++ C G C P + Sbjct: 2 EKLVVELCLGSSCFARGNSQTLQALEAYLKEEGL---AD-RVALVGHLCLGNCAKGPNLR 57 Query: 152 IGKDTYEDLTPERLEEII 169 IG +TY L + +I Sbjct: 58 IGSETYSGLDTASVLALI 75 >gi|304404619|ref|ZP_07386280.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9] gi|304346426|gb|EFM12259.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9] Length = 120 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 TR HV +C CM + +++ R +I +D + +C G C +A +V Sbjct: 9 TRHHVLICNGGSCMRQLGDEVTLAIREEIKLHK----ADNYIHTTRTKCNGRCEDACVVT 64 Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176 + Y+ +TPE + ++ + G+ Sbjct: 65 VYPEGIWYQGMTPESGKRLVREHLLRGE 92 >gi|212640009|ref|YP_002316529.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1] gi|212561489|gb|ACJ34544.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1] Length = 123 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GT+ HV +C CM +G E++ + R++I + LH + C G C +A +V Sbjct: 11 GTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHT----HVHTTRTRCNGRCEDACVV 66 Query: 151 MI 152 ++ Sbjct: 67 IV 68 >gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] Length = 570 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 7/89 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-----HQKPLHRNSDGTLSWEEVECQGAC 144 G++ + +C T C+ G K+ K+ L + CQG C Sbjct: 10 TGSKRRIIICAGTGCVSSGALKVHGALLKKLSERNMDIDVKLAPESQNLHLSKSGCQGFC 69 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+V + Y +T +++I++ Sbjct: 70 QMGPLVTVLPDNILYCKVTTSDVDDIVEQ 98 >gi|117923365|ref|YP_863982.1| ferredoxin 2Fe-2S [Magnetococcus sp. MC-1] gi|117607121|gb|ABK42576.1| ferredoxin, 2Fe-2S [Magnetococcus sp. MC-1] Length = 103 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 92 TRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + HV VC C G + E ++ ++ ++ + C G Sbjct: 3 PKHHVFVCMNRRPEGHPRGSCQASGSQGTFEAFNTELEKRGMYE----QVFVTGTFCMGP 58 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C P+ ++ Y ++ PE + EI D G+ + Sbjct: 59 CDRGPVAVVYPEGVWYGNVKPEDVSEIFDKHFVDGGEPVE 98 >gi|319645903|ref|ZP_08000133.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2] gi|317391653|gb|EFV72450.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2] Length = 128 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ +C T C G E+L +V +I R D + C G C + V I Sbjct: 10 KHHIFICNGTSCNRAGAEELTQVILQEIS----ERELDDVIHTTRTRCNGRCQDK-CVAI 64 Query: 153 G---KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199 Y DL PE + +ID+ T + + D + G+ S Sbjct: 65 HYPRGTWYRDLIPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVIS 114 >gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] Length = 599 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V VC T C + +LI +I L + C G C P + Sbjct: 4 KRTQVLVCAGTGCTIGNSGELITEFEKEIKALGLE----NEIEVLRTGCLGLCGVGPNIS 59 Query: 152 I--GKDTYEDLTPERLEEII 169 I Y+ + E ++EI+ Sbjct: 60 IYPDNIIYKSVKVEDVKEIV 79 >gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] Length = 618 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 G + + +C + C G + E ++ K + + C G C Sbjct: 21 QHKDGNKKLISLCSGSGCGAYGTASVYESLVAEL--KKAGLSD--LVEVRLTGCHGFCEK 76 Query: 147 APMVMI--GKDTYEDLTPERLEEIID-AFSTGQ 176 P+++I Y + P+ + EI++ G+ Sbjct: 77 GPIMVIHPEGIFYPQVKPDMIPEIVEMTLKNGE 109 >gi|220929709|ref|YP_002506618.1| hypothetical protein Ccel_2301 [Clostridium cellulolyticum H10] gi|220000037|gb|ACL76638.1| conserved hypothetical protein [Clostridium cellulolyticum H10] Length = 86 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + VC + C L+G ++I + I + L + C G C V IG Sbjct: 4 IYVCVGSSCHLKGSYQIINCFQRMIKENNLES----KAELKASFCMGHCTTGVCVKIGDT 59 Query: 156 TYEDL 160 Y D+ Sbjct: 60 FYGDV 64 >gi|83719806|ref|YP_440936.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264] gi|167579650|ref|ZP_02372524.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis TXDOH] gi|167617728|ref|ZP_02386359.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis Bt4] gi|257140409|ref|ZP_05588671.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264] gi|83653631|gb|ABC37694.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264] Length = 105 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 6 RHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 64 EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98 >gi|226940659|ref|YP_002795733.1| ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9] gi|226715586|gb|ACO74724.1| Probable ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9] Length = 106 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 16/89 (17%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144 HV C C RG +L++ ++ ++ K G + ++ C C Sbjct: 6 HHVFFCTNQREGGKDCCNNRGASELLDYAKDRIRELGLKGA-----GGVRVQKAGCLDRC 60 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P++++ + Y + + ++EII+ Sbjct: 61 DYGPVLVVYPDETWYTYVDRDDIDEIINE 89 >gi|78184265|ref|YP_376700.1| putative ferredoxin like protein [Synechococcus sp. CC9902] gi|78168559|gb|ABB25656.1| putative ferredoxin like protein [Synechococcus sp. CC9902] Length = 119 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Query: 87 LSPVGTRAHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVE 139 ++P H+ +C T C + + ++ + R +G + +V+ Sbjct: 1 MTPAKISHHLLLCATPSKAKCCDPAKGAATWDALKQGVKRLGLEAASR-PEGMVLRSKVD 59 Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C C P+++I Y ++TP+R+E I+ G Sbjct: 60 CLRICDRGPVLLIWPDGTWYGEVTPDRIERILTEHVIG 97 >gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] Length = 597 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VC T CM K+++ + + +K L + + C G C P+V+ Sbjct: 4 KNTILVCAGTGCMSSSSLKILKRLEDLMAEKGILEQTK-----IVKTGCFGLCSVGPIVI 58 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 + Y + E + I++ G Sbjct: 59 VYPEGAFYAHVQEEDADRIVNEHLIG 84 >gi|116071090|ref|ZP_01468359.1| putative ferredoxin like protein [Synechococcus sp. BL107] gi|116066495|gb|EAU72252.1| putative ferredoxin like protein [Synechococcus sp. BL107] Length = 119 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 14/100 (14%) Query: 87 LSPVGTRAHVQVCGTTP---CM--LRGCEKLIEVCR---NKIHQKPLHRN-SDGTLSWEE 137 ++P H+ +C T C ++G + + ++ + + +G + + Sbjct: 1 MTPAKISHHLLLCATPSKAKCCDPVKGA-ATWDALKQGVKRLGLEA--TSRPEGMVLRSK 57 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 V+C C P+++I Y ++TP+R+E I+ G Sbjct: 58 VDCLRICDRGPVLLIWPDGTWYGEVTPDRIERILTEHVIG 97 >gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 617 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 V VCG C+ G E+L+ + ++ K + DG + + C G C + V+I Sbjct: 28 VLVCGGPGCLPLGSEELVAAFKAEMEAKGI----DGKVILKTTGCHGLCSHGVRVLIRPQ 83 Query: 154 KDTYEDLTPERLEEIID 170 + Y+ + PE + EI+D Sbjct: 84 EIAYQKVQPEDVAEIVD 100 >gi|167835254|ref|ZP_02462137.1| ferredoxin family protein [Burkholderia thailandensis MSMB43] Length = 109 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 10 RHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 68 EEGPVVVVYPEGTWYTYVDKSDIDEIVESHLRDGQ 102 >gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R] Length = 594 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152 + +CG T CM ++L E + L + C G C P+V M Sbjct: 5 KIYICGGTGCMSSKSKRLKENIEAILASNHLED----KVEVRLTGCFGFCEKGPIVKIMP 60 Query: 153 GKDTYEDLTPERLEEIID 170 Y ++ P EI++ Sbjct: 61 DNTFYTEVNPRDAIEIVE 78 >gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 634 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + VC C+ G +I + ++ L ++ + C G C P+VM Sbjct: 24 AKPCISVCAGAGCLASGAADVIAAFKTELEFHNL-TTE---VNTKGTGCPGFCERGPIVM 79 Query: 152 I--GKDTYEDLTPERLEEII 169 I + Y + PE + EI+ Sbjct: 80 IYPEEICYLQVKPEDVPEIV 99 >gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 594 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152 + +CG T CM ++L E + L + C G C P+V M Sbjct: 5 KIYICGGTGCMSSKSKRLKENIEAILASNHLED----KVEVRLTGCFGFCEKGPIVKIMP 60 Query: 153 GKDTYEDLTPERLEEIID 170 Y ++ P EI++ Sbjct: 61 DNTFYTEVNPRDAIEIVE 78 >gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414] gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414] Length = 533 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 18/94 (19%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAPMV 150 ++ C C+ + + + ++ + V C C P+V Sbjct: 20 VQIRCCIAAACLATNSQAVKQSLEEA-------VTAENLAEQVEVYGVGCMRLCCQGPLV 72 Query: 151 MIGKDT--------YEDLTPERLEEIIDAFSTGQ 176 + K+T YE +TP+ II A + G+ Sbjct: 73 QVEKNTEPESTSTLYEKVTPDDAPSIITALNGGE 106 >gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 597 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VC C+ C+ + I + L + E C G C P+V+I Sbjct: 5 RSHVLVCAGAGCISSDCKAVQSALIANIQAQGLKD----EIKVVETGCMGPCDLGPVVLI 60 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y L PE +I+ + G+ Sbjct: 61 FPDGVFYRKLKPEDTADIVTEHLLKGK 87 >gi|121535571|ref|ZP_01667378.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] gi|121305811|gb|EAX46746.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1] Length = 80 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + +C + C LRG ++ I + + N D E CQG C ++ I Sbjct: 2 VKLSICIGSACHLRGAHGVLSAFNALIDKYQVQSNVD----LEGSFCQGKCTEGVVIKID 57 Query: 154 KDTYEDLTPERLEEI 168 + ++T +++ +I Sbjct: 58 DEVITNVTKDKVYDI 72 >gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 626 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN------SDGTLSWEEVE 139 + ++ + VC T C +G K+ E + + ++ L + D ++ Sbjct: 18 KRKEKLSKLSIYVCVGTGCTAKGALKVYEEFQRVLLREGLLNSVKLAKIEDSENPLKKTG 77 Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 C G C N P+V I Y +T +E+I++ G+ Sbjct: 78 CCGRCSNGPLVNILPHGYFYSHVTVNDVEKIVEKTIKRGE 117 >gi|301058538|ref|ZP_07199545.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2] gi|300447384|gb|EFK11142.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2] Length = 101 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ VC + C +G LI +I L R D L+ C C Sbjct: 6 HHIFVCSSFRASGEVKGKCSKKGSSDLIPYIEGEI----LDRGLDALLT--STGCMKQCD 59 Query: 146 NAPMVMIGKDT--YEDLTPER-LEEIIDAFSTG 175 N P+++I + Y ++T E ++EI+DA G Sbjct: 60 NGPVMVIYPENLWYGNVTSEEIVDEILDALEDG 92 >gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 624 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNS-DGTLSWEEVECQGACVNAP 148 + VC T C+ G ++ + + K + K + ++ + C G C P Sbjct: 25 RILVCAGTGCVAGGSLEIFDELKKKVENLSLPVKVGLLEEKESNVTVKTSGCHGFCEKGP 84 Query: 149 MVMIG--KDTYEDLTPERLEEII-DAFSTGQ 176 +V I + ++ + ++EII D G+ Sbjct: 85 LVKIEPLGILFTKVSQDDVDEIINDTIKAGK 115 >gi|78189218|ref|YP_379556.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3] gi|78171417|gb|ABB28513.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3] Length = 102 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 16/96 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC TP C + LI +++ + + SD ++ C Sbjct: 4 PKHHILVCASFRAQGTPQGICHKKNSLALIPYLESELADRGM---SD--VTVSATGCLNL 58 Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176 C P++++ E + E+++EI+DA G+ Sbjct: 59 CEKGPVLVVYPENFWYGEIDSEEKIDEILDALEEGE 94 >gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 624 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 17/101 (16%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGT 132 + + V VC T C+ G ++ E ++ ++P D T Sbjct: 14 MYSRYLKAEKRRVLVCAGTGCVSGGSMEIFERLSELVSKRGMDCQVELKEEPH----DNT 69 Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 + ++ C G C P+V I Y + E EEI+D Sbjct: 70 IGMKKSGCHGFCEMGPLVRIEPEGYLYTKVKLEDCEEIVDR 110 >gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] Length = 640 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 14/108 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 +R + VC T C G KL++ R+++ ++ L + +E C G C +V+ Sbjct: 24 SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 I Y + E ++I+ TI+ G ++R + + PA G Sbjct: 80 IYPQNICYFHVKSEDAADVIEK-------TIKTGELVERLLYADPATG 120 >gi|323486585|ref|ZP_08091906.1| hypothetical protein HMPREF9474_03657 [Clostridium symbiosum WAL-14163] gi|323399966|gb|EGA92343.1| hypothetical protein HMPREF9474_03657 [Clostridium symbiosum WAL-14163] Length = 125 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 20 EESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 E + E++S Y S+ ++ ++ QE GW+S E+ A + + Sbjct: 23 ERREEELKEILSYYSSMTSPSSQENIVSMMQEIQELYGWISAEHKEMAAEAAGVKLSVID 82 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGT 101 I Y L P R + C Sbjct: 83 CIMKLYK--SLKPAPYRHRMTFCTG 105 >gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 632 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 15/99 (15%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---------IHQKPLHRNSDGTLSWEEVEC 140 G R + VC T C+ G +K++ + + KP + DG + C Sbjct: 21 AGQRRVI-VCAGTGCVANGSKKVLAALETQMAEAGLDVVLEFKP-EGHGDG-VRLSHSGC 77 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIID-AFSTGQ 176 QG C P+V I Y + E + +I+D G+ Sbjct: 78 QGFCQMGPLVTILPENTLYTKVAVEDVPDIVDLTLKKGE 116 >gi|225849631|ref|YP_002729865.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1] gi|225644814|gb|ACO03000.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1] Length = 109 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 12/95 (12%) Query: 95 HVQVCG-----TTP-CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV VC P C +G + + + + ++ K L ++ C G C+ P Sbjct: 7 HVFVCLQRKPPGMPNCGEKGADMIFQKFQEELMMKNLFD----KMAVTPTGCMGPCMMGP 62 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V++ Y ++ PE + EII+ G R Sbjct: 63 TVVVYPDAVWYGNVKPEDVPEIIEKHILGGEPVER 97 >gi|303242582|ref|ZP_07329059.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302589886|gb|EFL59657.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 80 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++IE +N I L + C CVN V IG Sbjct: 2 KVAICIGSSCHLKGSRQIIEQLQNMIAANNLEE----KIELCGAFCMKNCVNGVSVTIGD 57 Query: 155 DTYEDLTPERLEEIID 170 + + +TPE + + Sbjct: 58 ELFS-VTPENAKNFFE 72 >gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Cylindrospermopsis raciborskii CS-505] Length = 533 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK- 154 ++ C C+ G + + E + L + + V C C + P+V I + Sbjct: 22 IRCCTAAGCLSSGSQAVKENLLTSLKAAGLEQ----QVEVVGVGCMRLCCHGPLVEIDEN 77 Query: 155 -----DTYEDLTPERLEEIIDAFSTGQGDTIR 181 Y+ +TP+ ++ID+ G+ T++ Sbjct: 78 KSHKIKLYQQVTPQDAPKVIDSIK-GKNTTLK 108 >gi|119485426|ref|ZP_01619754.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106] gi|119457182|gb|EAW38308.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106] Length = 99 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V VC C +G +++ + + E C G C N PMV+I Sbjct: 8 KVLVCQNRTCRKQGSAQVLAAFQAEPIPDVG---------IEATGCLGQCGNGPMVIILP 58 Query: 153 GKDTYEDLTPERLEEIID 170 + Y + PE + I++ Sbjct: 59 EEVWYNRIQPEEVPTIVE 76 >gi|332298932|ref|YP_004440854.1| hypothetical protein Trebr_2314 [Treponema brennaborense DSM 12168] gi|332182035|gb|AEE17723.1| hypothetical protein Trebr_2314 [Treponema brennaborense DSM 12168] Length = 84 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 16/91 (17%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC-----QGACVNA 147 + HV +C T C + G +++ + ++ + G + E + C C A Sbjct: 3 KIHVSICTGTACFVMGASEIM-LLEEQLPPELQ-----GRVEIEGITCFDKCKNAECGKA 56 Query: 148 PMVMIGKDTYEDLTPE-RLEEIIDAFSTGQG 177 P V I +T PE L +ID G Sbjct: 57 PFVQINGETI----PEASLVTVIDRIRELAG 83 >gi|224824990|ref|ZP_03698096.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002] gi|224602661|gb|EEG08838.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002] Length = 102 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C G L+ +++ K L +G + + C G C + P Sbjct: 7 HVFICCNQRAEGEGCCADFGTPALLGYMKDR--VKALGLAGEGQVRVNKAGCLGRCDDGP 64 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++++ + Y + + L+EIID+ Sbjct: 65 VMVVYPQETWYTFVDKDDLDEIIDS 89 >gi|217076869|ref|YP_002334585.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B] gi|217036722|gb|ACJ75244.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B] Length = 75 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C + C L+G +++E + ++ + + C G C N + I Sbjct: 2 VIKICMGSSCHLKGSYEVVEKIKE-MNLEG--------VKLYGSLCFGKCANGINIEIDG 52 Query: 155 DTYEDLTPERLEEIIDA-FSTGQ 176 +TP+ ++E I+ G Sbjct: 53 VLISSVTPDNVKEKIEKFLKEGN 75 >gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016] gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 320 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAP 148 G + + VC T C+ + + E R+KIH D +S C G C P Sbjct: 2 GNKKKIYVCCGTGCIAKNSMSIFEEFRDKIH----EMEIDAEVSAKLTSSVCSGICDKGP 57 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 +V I Y + + +EEII Sbjct: 58 VVKIYPNITYYG-VKIKDVEEIIQR 81 >gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 595 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 16/92 (17%) Query: 82 YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 YT H+ VCG T C+ ++++ H + + + + C Sbjct: 4 YTM----------HILVCGGTGCLSSQSNEIVDQLIA--HIEEAGMSE--EVQVLKTGCF 49 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 G C P+V I Y + PE EEI+ Sbjct: 50 GFCEKGPIVKILPDNTFYVQVKPEDAEEIVKE 81 >gi|254423540|ref|ZP_05037258.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335] gi|196191029|gb|EDX85993.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335] Length = 250 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P + + VC + C RG +L+ + L + + CQ C A Sbjct: 163 RPARQKQRILVCHKSGCNKRGGRQLVSALEQALQTYQLQD----RVEIQYTGCQKCCSKA 218 Query: 148 P--MVMIGKDTYEDLTPERLEEIIDA 171 P +M GK Y L P+ L +I+ Sbjct: 219 PGLTIMPGKHRYYGLNPQDLPSLIEK 244 >gi|238028747|ref|YP_002912978.1| Ferredoxin-like protein [Burkholderia glumae BGR1] gi|237877941|gb|ACR30274.1| Ferredoxin-like protein [Burkholderia glumae BGR1] Length = 107 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C + C + + E + + K L G + + C C Sbjct: 8 RHHVFFCLNQRDPGADRSSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRC 65 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + + ++EI+++ G+ Sbjct: 66 EEGPVMVVYPEGTWYTYVDKQDIDEIVESHLRDGK 100 >gi|52080317|ref|YP_079108.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580] gi|52785692|ref|YP_091521.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus licheniformis ATCC 14580] gi|52003528|gb|AAU23470.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580] gi|52348194|gb|AAU40828.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus licheniformis ATCC 14580] Length = 128 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + H+ +C + C G E+L +V R +I + L D + C G C + V I Sbjct: 10 KHHIFICNGSSCNRAGAEELTQVIRQEISDREL----DDFIHTTRTRCNGRCQDK-CVAI 64 Query: 153 G---KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199 Y DL PE + +ID+ T + + D + G+ S Sbjct: 65 HYPRGTWYRDLKPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVIS 114 >gi|295704477|ref|YP_003597552.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319] gi|294802136|gb|ADF39202.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319] Length = 130 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 14/96 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL----HRNSDGTLSWEEVECQGACVNA 147 T+ HV +C + C G E++ + R++I + L H C G C + Sbjct: 9 TKHHVLICNGSSCNRFGAEEVTQAIRSEIANQELDPYIHTT--------RTRCNGRCHDK 60 Query: 148 PMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 +V+ Y+D+ P+ +E+I++ Q + Sbjct: 61 CVVISYPDGIWYKDVKPQDAQELINSLKKDQPFVEK 96 >gi|239628145|ref|ZP_04671176.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518291|gb|EEQ58157.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 79 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++I + + C G C + V + Sbjct: 2 KVTICIGSACHLKGSREIIAKLQKL----VAENGLSDQVDLNGAFCTGNCDHGVCVTVEG 57 Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176 + Y L PE EE + G+ Sbjct: 58 ELYS-LKPEDTEEFFENEIKGR 78 >gi|113475882|ref|YP_721943.1| hypothetical protein Tery_2241 [Trichodesmium erythraeum IMS101] gi|110166930|gb|ABG51470.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 109 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R V VC C+ + +++++ + + + E C G C +P V Sbjct: 14 GDRY-VFVCQNHSCLRQNSQEVLKAFKAETENLVG-------VYIESSSCLGQCSISPTV 65 Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179 I + Y + PE + I+ G Sbjct: 66 RIIPDEIWYYRVQPEHVPLIVTQHFVGNKPV 96 >gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4] Length = 538 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 7/91 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V C +T C + + + L + V C G C P+V I Sbjct: 21 RVHCCTSTGCQAANSLAVKKEMEQAVKTAGLQD----KIEVVGVGCMGFCGKGPIVEIEP 76 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 YE + PE IID + G+ PG Sbjct: 77 QGLQYEVVKPEVAASIIDGLNGGEVKA-TPG 106 >gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 629 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V+VC T C+ G E+ + +I K CQG C AP++ Sbjct: 27 VVKVCQGTGCLAAGAEETFRAFQEEIARQGVKA---------QVIPTGCQGFCQGAPVIT 77 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP---GPQIDRISSAPAG 195 + +T + +I+D G+ ++ PQ +I P Sbjct: 78 VEPRGWFLHRITAADVPKIVDVVLKRGGELVQHFYRDPQTGKICRRPED 126 >gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7] gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7] Length = 626 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + + VCG T C +I +N+I + + C G C P+ Sbjct: 31 KNMKRSILVCGGTGCHASKSLDVISTLKNEIKNAGIE----NEVDVISTGCFGFCEKGPI 86 Query: 150 VMI--GKDTYEDLTPERLEEII 169 V + Y ++T E+ + I+ Sbjct: 87 VKVVPDNVFYVEVTAEKAKLIV 108 >gi|150016878|ref|YP_001309132.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052] gi|49617542|gb|AAT67466.1| hypothetical 2Fe2S ferredoxin [Clostridium beijerinckii] gi|149903343|gb|ABR34176.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052] Length = 102 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHRNSD----GTLSWEEVECQGACVN 146 + H+ VC C + G +K + ++ + K + D + C G C Sbjct: 5 KHHIFVC--ASCRVNGMQKGMCYSKDSVKVVQKFMEEVEDRDLINEVMVTNTGCLGVCNK 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+V++ Y ++ E +E I++ G Sbjct: 63 GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93 >gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 588 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V VCG T C+ G +++ +V ++ ++ + CQG C P++ + Sbjct: 2 RVLVCGGTGCVTSGSQEVKDVLETELEKENIQ-----DYKVIFTGCQGFCEQGPLIRVEQ 56 Query: 153 GKDTYEDLTPERLEEII 169 + Y ++ E ++I+ Sbjct: 57 DETFYCNVDAEGAKKIV 73 >gi|315505069|ref|YP_004083956.1| ferredoxin [Micromonospora sp. L5] gi|315411688|gb|ADU09805.1| ferredoxin [Micromonospora sp. L5] Length = 214 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R H+ +C C RG ++ + + ++D ++ + C C + P+ ++ Sbjct: 115 RHHLLLCRGPRCSARGADETYRAIVGAL-VEQQLTDADVLMA--QTGCLFPCNHGPVAVV 171 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 Y + P ++ + G+ Sbjct: 172 HPDGTWYGPVRPGDAARLVGEHLRAGR 198 >gi|219848576|ref|YP_002463009.1| hypothetical protein Cagg_1672 [Chloroflexus aggregans DSM 9485] gi|219542835|gb|ACL24573.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 80 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 102 TPCML--RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159 T C L R L + P L E++C AC + P VMI D + Sbjct: 7 TVCRLCARSRPDLWQTLARLRANHPGE------LRVVELDCMAACDDVPAVMIDFDYFPR 60 Query: 160 LTPERLEEIIDA 171 +TP++L E++ + Sbjct: 61 VTPQQLIELVQS 72 >gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] Length = 596 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E++IE R + Q L C G C P+V MI Sbjct: 8 ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62 Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176 Y + P +EI+ + G+ Sbjct: 63 NTFYVQVQPSDADEIVREHLVKGR 86 >gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] Length = 596 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E++IE R + Q L C G C P+V MI Sbjct: 8 ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62 Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176 Y + P +EI+ + G+ Sbjct: 63 NTFYVQVQPSDADEIVREHLVKGR 86 >gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] Length = 596 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E++IE R + Q L C G C P+V MI Sbjct: 8 ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62 Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176 Y + P +EI+ + G+ Sbjct: 63 NTFYVQVQPSDADEIVREHLVKGR 86 >gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum] Length = 538 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 13/97 (13%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 Q++ V+VC C ++E + G+ + V C G Sbjct: 11 AQYRNEDAHIEREVRVCVAASCQSAAAVPVLEALK-----SACDTQGAGSCKVKGVGCMG 65 Query: 143 ACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171 C P+V + Y D+TP+ +I+ + Sbjct: 66 LCSAGPLVAVADKDCALNESALYRDVTPDDAPDIMAS 102 >gi|317127563|ref|YP_004093845.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM 2522] gi|315472511|gb|ADU29114.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM 2522] Length = 133 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIH----QKPLHRNSDGTLSWEEVECQGACVNAPM 149 H+ +C CM G E+L++ RN+I K +H + + C G C + Sbjct: 11 HHLLICNGGSCMKAGAEELVQAVRNEIGKMDVHKRVHTSR----TL----CNGRCHDK-C 61 Query: 150 VMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V+I Y+ +T +I++ TG+ T + Sbjct: 62 VLISYPDGYWYKGMTSADASNLIESLLTGKVMTEK 96 >gi|239817883|ref|YP_002946793.1| ferredoxin-like protein [Variovorax paradoxus S110] gi|239804460|gb|ACS21527.1| ferredoxin-like protein [Variovorax paradoxus S110] Length = 117 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 12/98 (12%) Query: 89 PVGTR-AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 P G H+ C C L + + C+ K K G + + C Sbjct: 9 PRGYYGRHIFFCLNERKNGEDCCALHNAQAGFDRCKAK--VKEAGLAGPGKVRVNKAGCL 66 Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C P+ ++ + Y + + ++EI+D+ GQ Sbjct: 67 DRCAGGPVAVVYPEAVWYTFVDADDIDEIVDSHLKNGQ 104 >gi|218513055|ref|ZP_03509895.1| formate dehydrogenase subunit gamma [Rhizobium etli 8C-3] Length = 42 Score = 49.7 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 17/41 (41%) Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + E V C G C AP M+ + Y + + E++ Sbjct: 2 TLEAVYCLGLCACAPSAMLDGEVYGRVDDQLATELVAEARR 42 >gi|288960155|ref|YP_003450495.1| 2Fe-2S ferredoxin [Azospirillum sp. B510] gi|288912463|dbj|BAI73951.1| 2Fe-2S ferredoxin [Azospirillum sp. B510] Length = 110 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 15/93 (16%) Query: 89 PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P R HV C C +G L + K + G C Sbjct: 6 PQTFRHHVFCCAQQRPPGHPRGSCAAKGAHPLWQRLDQK--IQGQGLTDIGMA---MTGC 60 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 G C P++++ Y TPE ++EI+D+ Sbjct: 61 LGFCSAGPLMVVYPEGIWYRPETPEDIDEIVDS 93 >gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] Length = 623 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEV----CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 V VC T CM G +K+ + C++ K + L + CQG C P++ Sbjct: 26 RVLVCSGTGCMASGAQKIYDEMSLLCKDLEGVKIEMQKDLPHLGVVKTGCQGLCELGPLM 85 Query: 151 MIG--KDTYEDLTPERLEEIIDA 171 I Y + PE EI++ Sbjct: 86 RIEPYNYQYVKVQPEDCREIVEK 108 >gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] Length = 624 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGTLSWEEVECQGACVNAP--M 149 V VC T C +G K+ E + + ++ N D + C G C + P + Sbjct: 28 VYVCVGTGCAAKGSLKVYEALKKIFKENNVNVNLQKLDDNEERVRKTGCCGRCSSGPWVI 87 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196 VM Y ++ PE ++EI + +TI G ++R + + PA G Sbjct: 88 VMPYGYFYSEVKPEDVKEIYE-------ETILKGKPVERLLFTDPATG 128 >gi|186680959|ref|YP_001864155.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc punctiforme PCC 73102] gi|186463411|gb|ACC79212.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc punctiforme PCC 73102] Length = 180 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P +A + VC C+ RG + L+ + ++ E CQ C +AP Sbjct: 96 PPQIKARIMVCQKGGCLKRGGKGLLSDLEKTL-CDRGLL---DKVTIEHTSCQKCCNSAP 151 Query: 149 --MVMIGKDTYEDLTPERLEEIIDA 171 ++ +GK Y+++ P+ + ++++ Sbjct: 152 NCVLHLGKKKYKNIHPDAIASLLES 176 >gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea psychrophila LSv54] Length = 550 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + +C C+ G +L + ++ ++ L D + + V C G C P+V + Sbjct: 24 HQLNICVAAGCLSCGSGELKTALQEEVARRGL----DKQVCVKGVGCLGLCSAGPLVALA 79 Query: 154 KD--TYEDLTPERLEEIIDAF 172 Y+ P +E I+DA Sbjct: 80 SKNVLYQGCGPADVETILDAL 100 >gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +CG T C GC+++ + ++ + L + C G C P+V++ Sbjct: 5 RSHVLICGGTGCSSSGCQQVQDKFNEELDKHNL----SNEVKLIITGCHGLCELGPIVIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 +Y ++ E + EI++ Sbjct: 61 YPEGTSYFTVSAEDVSEIVEE 81 >gi|193212204|ref|YP_001998157.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327] gi|193085681|gb|ACF10957.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327] Length = 100 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 12/84 (14%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 AHV +C C + L + + K G + C G C Sbjct: 11 AHVFICTNDRKGERKSCADGDSQLLKAKLKEAVDAKGWK----GKVRVSTSGCLGVCGEG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEII 169 P VMI K + +TP+ ++EI+ Sbjct: 67 PNVMIYPQKLWFSGVTPDDVDEIL 90 >gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1] Length = 623 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 A + +C T C G +K+ + ++ + L + C G C P+V+I Sbjct: 31 AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTPGCHGFCERGPLVVIR 86 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y+ L + EII+ Sbjct: 87 PQNIFYQRLKISDIPEIIEK 106 >gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 595 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 H+ +C T C+ ++ + I + C G C P+++I Sbjct: 6 HILICHGTACVSSESREVYKALEKAI----DEAGLADQVRILHTGCFGFCARGPIILIHP 61 Query: 153 GKDTYEDLTPERLEEIIDA 171 G Y +++ ++EI++ Sbjct: 62 GGVMYCEVSVGDVKEIVEE 80 >gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 622 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 19/130 (14%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146 G+R H+ + T + G ++E ++ + +V C G C Sbjct: 23 AGSRPHILIGTATCGKVAGAMSVLEAVEATLQRLGIEADIT---------QVGCFGMCYA 73 Query: 147 APMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201 P V I + +Y +TPE+ +I+ + G RP + I GL SL Sbjct: 74 EPTVDIALPGQPRISYGYMTPEKATRVIEDYIAG--GDPRPDLALCTIGEGRVDGLPSLE 131 Query: 202 DNNSKKRGKK 211 + + ++ Sbjct: 132 EMPMYRAQRR 141 >gi|89054741|ref|YP_510192.1| hypothetical protein Jann_2250 [Jannaschia sp. CCS1] gi|88864290|gb|ABD55167.1| hypothetical protein Jann_2250 [Jannaschia sp. CCS1] Length = 249 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P R HV VC C LR L+ + + + L D ++ C C P Sbjct: 146 PPAHRHHVLVCTGPRCHLRDAPDLLGLLKAE--ITHLSLGDDCLVT--ATGCLFPCNAGP 201 Query: 149 MVMI 152 +V++ Sbjct: 202 VVVV 205 >gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] Length = 624 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 8/83 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVC-----RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 + VC T C G K+ + + + K D + + C G C P+V Sbjct: 28 IYVCVGTGCTANGSRKVYKKFVEVIRKKGLDVKV-ETIDDESDVVRKTGCCGLCSLGPLV 86 Query: 151 --MIGKDTYEDLTPERLEEIIDA 171 M TY + + +EEI++ Sbjct: 87 KIMPEGITYSHVRLDDVEEIVEK 109 >gi|172035448|ref|YP_001801949.1| hypothetical protein cce_0532 [Cyanothece sp. ATCC 51142] gi|171696902|gb|ACB49883.1| hypothetical protein cce_0532 [Cyanothece sp. ATCC 51142] Length = 94 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 11/72 (15%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VC C G +K++ + + D + C G C N P ++I Sbjct: 23 ILVCQGRCCRKDGSKKILTALES-------QTSGD--IKVMPCGCLGQCGNGPNIIILPE 73 Query: 154 KDTYEDLTPERL 165 + Y+ ++P+ + Sbjct: 74 EKLYQRVSPKDV 85 >gi|269792194|ref|YP_003317098.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099829|gb|ACZ18816.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 104 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII-DAF 172 ++ C GAC P+V Y +TPE+L I+ +A+ Sbjct: 63 VTVRRSSCLGACSQPPVVEFRGKVYASMTPEKLRSILREAY 103 >gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 633 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 16/116 (13%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQG 142 G + V +C T C+ G K+ + ++ +K L ++ G ++ CQG Sbjct: 16 GAQRRVVICAGTGCVANGAMKVHAAFQQRMAEKNLPFVLELREENDNSGKTAFTRSGCQG 75 Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 C P+V + Y + P ++EII+ G G R + S P G Sbjct: 76 FCQMGPLVTVLPENILYTQVKPADIDEIIETSLIGGGVVER------LLYSEPGNG 125 >gi|150021056|ref|YP_001306410.1| ferredoxin-like protein [Thermosipho melanesiensis BI429] gi|149793577|gb|ABR31025.1| Ferredoxin-like protein [Thermosipho melanesiensis BI429] Length = 125 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 ++ G R + V T + G + + ++ N D +S + C G C Sbjct: 22 KMREEGKRGKITVAMGTCGIAAGAKDTLNAIVETLN----ELNID-DISVVQSGCMGLCE 76 Query: 146 NAPMVMI--GKDT---YEDLTPERLEEIIDA 171 P + + D Y +TPE + II + Sbjct: 77 VEPTIKVELDDDVPVIYGHVTPENAKRIIKS 107 >gi|219851218|ref|YP_002465650.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c] gi|219545477|gb|ACL15927.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c] Length = 102 Score = 49.0 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 14/92 (15%) Query: 94 AHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C ++ C + ++ + + ++ ++ C G C Sbjct: 6 HHIFICTSSRPTGQQKGFCHNKEGVDVMMRFMEE--IEDRELGNEVFIT--NTGCFGICE 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+V++ Y +TP+ + EI+D G Sbjct: 62 KGPIVVVYPDNIWYGSVTPDDVGEILDEHIEG 93 >gi|125972946|ref|YP_001036856.1| hypothetical protein Cthe_0425 [Clostridium thermocellum ATCC 27405] gi|256005702|ref|ZP_05430658.1| hypothetical protein ClothDRAFT_2519 [Clostridium thermocellum DSM 2360] gi|281417157|ref|ZP_06248177.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|125713171|gb|ABN51663.1| NADH dehydrogenase subunit E [Clostridium thermocellum ATCC 27405] gi|255990333|gb|EEU00459.1| hypothetical protein ClothDRAFT_2519 [Clostridium thermocellum DSM 2360] gi|281408559|gb|EFB38817.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|316940818|gb|ADU74852.1| hypothetical protein Clo1313_1796 [Clostridium thermocellum DSM 1313] Length = 81 Score = 49.0 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 16/86 (18%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 V +C + C L+G ++++E ++ + K + C CVN V Sbjct: 2 KVSICIGSSCHLKGAKQIVEQLQSLVADYNLKE-------KVELGGAFCMKNCVNGVSVT 54 Query: 152 IGKDTYEDLTPERLE-----EIIDAF 172 + + +TPE ++ EI+ Sbjct: 55 VDDKLFS-VTPENVKSFFETEILKKL 79 >gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101] Length = 521 Score = 49.0 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 A +++C C RG +L+E CR + + L +EV C G C + P++ I Sbjct: 3 ACLRLCTAASCRSRGATELLEHCRKALA------SDQAQLRVKEVGCLGPCSDGPLLAID 56 >gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19] gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3] gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19] gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3] Length = 596 Score = 49.0 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E++IE R + Q L C G C P+V MI Sbjct: 8 ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62 Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176 Y + P +EI+ + G+ Sbjct: 63 NTFYVQVQPSDTDEIVREHLVKGR 86 >gi|160895832|ref|YP_001561414.1| ferredoxin-like protein [Delftia acidovorans SPH-1] gi|160361416|gb|ABX33029.1| ferredoxin-like protein [Delftia acidovorans SPH-1] Length = 124 Score = 49.0 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 14/111 (12%) Query: 90 VGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 G H+ C C L G + + C+ + K L G + + C Sbjct: 16 AGNYYARHIFFCLNERPNGEDCCALHGAKAGFDHCKKQ--VKQLGLAGKGQVRVNKAGCL 73 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG-DTIRPGPQIDR 188 C P+ ++ Y + ++EI+++ GQ + + P + R Sbjct: 74 DRCAGGPVAVVYPEGTWYTFVDESDIDEIVESHLKNGQPVERLLLPPDVGR 124 >gi|269925972|ref|YP_003322595.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798] gi|269789632|gb|ACZ41773.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798] Length = 113 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + V +C C R +LI V + + L G + C C P ++I Sbjct: 2 KYSVAICAGADCSKRNTSQLITVLEQALRDEGLE----GDVLLRPAACSKLCELGPTLII 57 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176 + Y +TPERL+ I+ + G Sbjct: 58 YPDRVWYGGVTPERLQRIVREHLKYGN 84 >gi|253997648|ref|YP_003049712.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8] gi|253984327|gb|ACT49185.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8] Length = 102 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 10/86 (11%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C CM G E+ + +++ K L+ N G + C C + Sbjct: 6 YHVFFCLNQREGGAACCMDHGAEQAFDHMKSR--VKKLNLNGAGKVRINRAGCLDRCNDG 63 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P++++ Y + + ++EI+D+ Sbjct: 64 PVMVVYPQAVWYTFVDNDDIDEIVDS 89 >gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 575 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG T C+ +K+I+ + K + + C G C P++ I Sbjct: 35 ILVCGGTGCLASDSDKVIKNLGAIL--KAKGLSE--QVQVIRTGCFGFCEQGPIIKIEPD 90 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + P+ +EII+ Sbjct: 91 NVFYVRVKPKDAKEIIEQ 108 >gi|163782063|ref|ZP_02177062.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1] gi|159882595|gb|EDP76100.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1] Length = 110 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 18/95 (18%) Query: 95 HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGAC 144 HV +C C +G ++ + K+ + P + C G C Sbjct: 5 HVFICVNQRPPGHPQGSCAEKGSREVYQAFMEKLQEDPELFMSTA-----VTPTGCLGPC 59 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 + P +++ Y ++ E +EEII + G+ Sbjct: 60 MMGPTMVVYPEGIWYGNVKVEDVEEIIREHLKGGK 94 >gi|254000281|ref|YP_003052344.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4] gi|253986960|gb|ACT51817.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4] Length = 110 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C + C G E + +++ K L + G + C C Sbjct: 12 HHVFFCLNKREDGSDCCANHGAEAAFDYMKSR--IKKLKLSGKGNVRINRAGCLDRCSEG 69 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P+++I + Y + E ++EII++ Sbjct: 70 PLMVIYPEAVWYGFVDNEDIDEIIES 95 >gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] Length = 659 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + +C T C+ G ++ R R ++ C G C P+V+ Sbjct: 68 RRWRLLLCAGTGCIASGGAPVVAALREV----VEERGMSNQVAIVLTGCHGFCEQGPIVV 123 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRISSAPA 194 + G Y ++ + +I+D G R P + ++S P Sbjct: 124 VEPGNTFYRRVSAADVRDIVDTHLIGGQKVDRLLYRLPGGEAVASYPE 171 >gi|313202237|ref|YP_004040895.1| ferredoxin 2fe-2S protein [Methylovorus sp. MP688] gi|312441553|gb|ADQ85659.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. MP688] Length = 105 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C + C G E + +++ K L + G + C C Sbjct: 7 HHVFFCLNKREDGSDCCANHGAEAAFDYMKSR--IKKLKLSGKGNVRINRAGCLDRCSEG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P+++I + Y + E ++EII++ Sbjct: 65 PLMVIYPEAVWYGFVDNEDIDEIIES 90 >gi|294101230|ref|YP_003553088.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM 12261] gi|293616210|gb|ADE56364.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM 12261] Length = 97 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 23/42 (54%) Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + + V C GAC +P+V + Y +T E+L ++ ++ T Sbjct: 55 VHIKLVSCLGACTASPVVEFKGEIYGHMTKEKLFALLRSYFT 96 >gi|225848008|ref|YP_002728171.1| ferredoxin 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644489|gb|ACN99539.1| ferredoxin, 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1] Length = 108 Score = 48.6 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 18/88 (20%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL---SWEEVECQGACV 145 HV VC C +G +++ + + K G + C G C+ Sbjct: 6 HVFVCMQRKPPGMPSCGDKGSDQIFMKFQEALMTK-------GLFNKMAVTATGCLGPCM 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P V++ Y ++TP +EEII Sbjct: 59 FGPNVVVYPDAIWYGNVTPADVEEIIQK 86 >gi|21674473|ref|NP_662538.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS] gi|21647662|gb|AAM72880.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS] Length = 100 Score = 48.6 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 12/84 (14%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV VC C + + + + + K G + C G C Sbjct: 11 VHVFVCTNDRGGERKSCADNNSQLVKDQLKKAVDGKGWK----GKVRVSTSGCMGVCGEG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEII 169 P VMI K + ++P+ ++ ++ Sbjct: 67 PNVMIYPQKLWFSRVSPDDVDAVL 90 >gi|241661813|ref|YP_002980173.1| ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D] gi|240863840|gb|ACS61501.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D] Length = 109 Score = 48.6 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C G + + E + + K L N +G + + C C Sbjct: 7 HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + E ++EII + Sbjct: 65 PVMVVYPEAVWYTFVDKEDIDEIIQS 90 >gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 597 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 17/104 (16%) Query: 79 ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138 TFY R H+ VCG C GC ++ R + +K + + + Sbjct: 1 MTFY----------RGHLLVCGGEGCTSSGCNEVHGAFREAMRKKKIED----EIKIVQT 46 Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDT 179 C G C P+V++ Y + + EI++ G+ T Sbjct: 47 GCHGYCEKGPLVVVYPEGVMYNRVGVKDASEIVNEHLVKGKPVT 90 >gi|257452271|ref|ZP_05617570.1| hypothetical protein F3_04335 [Fusobacterium sp. 3_1_5R] gi|257465929|ref|ZP_05630240.1| hypothetical protein FgonA2_00585 [Fusobacterium gonidiaformans ATCC 25563] gi|315917085|ref|ZP_07913325.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] gi|317058814|ref|ZP_07923299.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313684490|gb|EFS21325.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313690960|gb|EFS27795.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] Length = 69 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 12/75 (16%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V VC C + +K+ E + EEV C G C P V Sbjct: 2 EKKKVIVCRGMTCGKKN-QKMWEALSKREDII-----------LEEVRCFGQCKKGPNVK 49 Query: 152 IGKDTYEDLTPERLE 166 I Y + E++E Sbjct: 50 IDGQIYHFMDLEKVE 64 >gi|108805721|ref|YP_645658.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941] gi|108766964|gb|ABG05846.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941] Length = 109 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 AHV +CG C RG +++ +V + ++ + N D + + V+C G C + P ++ Sbjct: 8 AHVLLCGGGDCKKRGSKEVRKVLKAEL--RAAGLNRD--VRVDSVDCLGFCKHGPNAVVY 63 Query: 153 -----GKDTYEDLTPERLEEIIDA-FSTGQ 176 G Y L ++ E++ A G+ Sbjct: 64 GPNGHGGTWYLGLDEGKVPEVVSAHLKEGR 93 >gi|167561352|ref|ZP_02354268.1| ferredoxin family protein [Burkholderia oklahomensis EO147] gi|167568583|ref|ZP_02361457.1| ferredoxin family protein [Burkholderia oklahomensis C6786] Length = 109 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C G +++ E + + K L G + + C C Sbjct: 11 HHVFFCLNQREKSADRPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRCE 68 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V++ Y + ++EI+++ GQ Sbjct: 69 EGPVVVVYPEGVWYTYVDTNDIDEIVESHLRDGQ 102 >gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] Length = 635 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + E + + + + +D + C G C P+V Sbjct: 42 EHLQILICGGTGCKASDSHIIAERLQQALERNNI---AD-KVDIITTGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y + P+ +EI+ G Sbjct: 98 IIPDNTFYTQVVPDDADEIVREHIIG 123 >gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile 630] gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-66c26] gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile CIP 107932] gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-63q42] gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile ATCC 43255] gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-76w55] gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-97b34] gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-37x79] gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit [Clostridium difficile QCD-23m63] gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile QCD-32g58] gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit HymB-like [Clostridium difficile] gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile CD196] gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit [Clostridium difficile R20291] gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08] gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07] Length = 628 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC T C +++ N+I + + +S C G C P+V + Sbjct: 34 RRELLVCCDTGCTSSNSLEIVSELENEIKKSGIQD----KVSVRLTGCFGFCAQGPIVKV 89 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + P E+I+ + Sbjct: 90 YPDNVFYVKVEPSDAEKIVQS 110 >gi|301631537|ref|XP_002944854.1| PREDICTED: ferredoxin, 2Fe-2S-like [Xenopus (Silurana) tropicalis] Length = 113 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 12/115 (10%) Query: 84 QFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +P + H+ C C G ++ E C+ + K L + G + + Sbjct: 1 MSDTTPPYFQRHIFFCLNERANGEACCAQYGAQQAFEHCKAQ--AKALGLSGPGKVRVNK 58 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188 C C P+ ++ Y + ++EI+ GQ + +R P++ R Sbjct: 59 AGCLDRCAAGPVAVVYPEGVWYSYVDTSDIDEIVTTHLRDGQVVERLRTPPELGR 113 >gi|187927293|ref|YP_001897780.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J] gi|309780008|ref|ZP_07674761.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA] gi|187724183|gb|ACD25348.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J] gi|308921178|gb|EFP66822.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA] Length = 109 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C G + + E + + K L N +G + + C C Sbjct: 7 HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + E ++EII + Sbjct: 65 PVMVVYPEAVWYTFVDKEDIDEIIQS 90 >gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] Length = 632 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNK-------IHQKPLHRNSDG-TLSWEEVECQGAC 144 R + +C T C+ G + + + +H + D + CQG C Sbjct: 21 RMRIIICAGTGCLAGGSLNIFHAFKAEAQKHGVPLHVELKQ--EDNPEFLLSKSGCQGFC 78 Query: 145 VNAPMVMIG--KDTYEDLTPERLEEIID 170 P+V I Y +T E + EI + Sbjct: 79 QVGPLVTIEPAGILYTKVTAEDVPEIFE 106 >gi|124262989|ref|YP_001023459.1| hypothetical protein Mpe_B0451 [Methylibium petroleiphilum PM1] gi|124263023|ref|YP_001023493.1| hypothetical protein Mpe_B0486 [Methylibium petroleiphilum PM1] gi|124262235|gb|ABM97224.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] gi|124262269|gb|ABM97258.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 115 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%) Query: 93 RAHVQVCGTTPCMLRG-CEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAP 148 R H+ +C C G + L + +K + + V C AC P Sbjct: 14 RRHILICTGPRCTKDGQSQVLFDSLGDKFKAVGLHQGEL----RVKRSRVSCFAACNGGP 69 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175 ++ + Y D+TP+ ++ II+ G Sbjct: 70 VMCVQPDGVWYYDVTPQNMDRIIEQHLVG 98 >gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis] Length = 541 Score = 48.6 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 15/109 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 ++ C C+ + + E + + + V C C P+V + Sbjct: 20 VQIRCCVAAGCLSANSQAVKERLEET--VTAKNLTA--KVEVRGVGCMRLCCQGPLVEVR 75 Query: 153 ---------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 K YE +TP+ I+ A + G+ T++ G + Sbjct: 76 SQEESQQFPQKKLYEKVTPDDAPSIVTAVN-GEETTVKQGNLSHPFFTY 123 >gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 631 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R HV VC T C ++ + +I N + + + C G C P+V Sbjct: 38 GARKHVLVCAGTGCTSSKSPQIQKKFEEQI----EQNNLNDEVKIVKTGCFGFCEAGPIV 93 Query: 151 MI--GKDTYEDLTPERLEEIIDA 171 +I Y + E +E I+ Sbjct: 94 VIYPEGTFYSHIKVEDVERIVKE 116 >gi|73539984|ref|YP_294504.1| putative ferredoxin [Ralstonia eutropha JMP134] gi|72117397|gb|AAZ59660.1| putative Ferredoxin [Ralstonia eutropha JMP134] Length = 106 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGA 143 + HV C C + + E + ++ G + + C Sbjct: 6 KHHVFFCLNQREAGENCCAQHNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNR 61 Query: 144 CVNAPMVMIGKDT--YEDLTPERLEEIIDA 171 C P++++ + Y + + ++EIID+ Sbjct: 62 CELGPVLVVYPEAVWYTFVDEKDIDEIIDS 91 >gi|57234137|ref|YP_181864.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195] gi|57224585|gb|AAW39642.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195] Length = 100 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 16/96 (16%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ VC + C +G L+ N+I + C +C Sbjct: 6 YHILVCNSFRVNGDPQGICNRKGAADLLGYLENEI-IDRG-----LNVLVSSTGCLKSCE 59 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179 + P ++I Y ++ +L+ I+DA GQ + Sbjct: 60 HGPAMVIYPPGWWYGEVDTAKLDIILDALEDGQAAS 95 >gi|53724947|ref|YP_101910.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344] gi|121599717|ref|YP_991578.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1] gi|126449924|ref|YP_001082713.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247] gi|254202023|ref|ZP_04908387.1| ferredoxin family protein [Burkholderia mallei FMH] gi|52428370|gb|AAU48963.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344] gi|121228527|gb|ABM51045.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1] gi|126242794|gb|ABO05887.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247] gi|147747917|gb|EDK54993.1| ferredoxin family protein [Burkholderia mallei FMH] Length = 104 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 6 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63 Query: 145 VNAPMVM-IGKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V+ Y + ++EI+++ GQ Sbjct: 64 EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 97 >gi|218779362|ref|YP_002430680.1| ferredoxin, 2Fe-2S [Desulfatibacillum alkenivorans AK-01] gi|218760746|gb|ACL03212.1| ferredoxin, 2Fe-2S [Desulfatibacillum alkenivorans AK-01] Length = 100 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 17/94 (18%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ VC + C +G L+ N+I D ++ C AC Sbjct: 6 HHIFVCASFRADGDAKGVCNKKGAVSLLPYIENEI-IDRG---LDAQIT--STGCMKACD 59 Query: 146 NAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQ 176 + P+++I Y + E ++EI+DA G+ Sbjct: 60 HGPVMVIYPAGLWYGGVESEDAVDEILDALEDGE 93 >gi|255502229|gb|ACU11594.1| HfsA [Thermoanaerobacterium saccharolyticum] Length = 84 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VC + C L+G +I + I + + + C G C+ A V Sbjct: 5 VITVCVGSSCHLKGSYDVINKLKEMIKNYGIED-------KVELKADFCMGNCLRAVSVK 57 Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ 176 I + P +E G+ Sbjct: 58 IDGGACLSIKPNSVERFFKEHVLGE 82 >gi|239906687|ref|YP_002953428.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1] gi|239796553|dbj|BAH75542.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1] Length = 101 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 17/95 (17%) Query: 94 AHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + VC C +G L+ + D C C Sbjct: 6 YLINVCASFRVKGEAKGICHKKGSHNLLGYMEE------GILDRDIDARVVSTGCLKQCE 59 Query: 146 NAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 + P+V++ E + ++++EI+DA G+ Sbjct: 60 DGPVVVVMPNNWWYKEIDSEDKVDEILDALENGEA 94 >gi|283853653|ref|ZP_06370886.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] gi|283570955|gb|EFC18982.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] Length = 80 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C RG +K + + + L + C+ C + P + I Sbjct: 2 KHDIVICMGSSCFARGNKKHLLLIEQYLADHGLTDT----VVLSGSRCEDQCTSGPNIRI 57 Query: 153 GKDTYEDLTPERLEEII 169 Y D+ ERL E++ Sbjct: 58 DGQLYGDINTERLMELL 74 >gi|282900705|ref|ZP_06308647.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281194505|gb|EFA69460.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 188 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVM 151 A + VC + C+ G + L+ + + E CQ AC AP ++M Sbjct: 106 AKIMVCQKSACLKHGGKSLLANLEKTL-CDRGLL---DKVKIEHTNCQKACRTAPNCILM 161 Query: 152 IGKDTYEDLTPERLEEII 169 +G++ Y+ L PE + ++ Sbjct: 162 LGEEQYKKLEPEAIASLL 179 >gi|160878254|ref|YP_001557222.1| hypothetical protein Cphy_0093 [Clostridium phytofermentans ISDg] gi|160426920|gb|ABX40483.1| conserved hypothetical protein [Clostridium phytofermentans ISDg] Length = 80 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C L+G ++I I + L + C G CV + + Sbjct: 2 VVTICVGSSCHLKGSREIITRLETLITENKLKS----KVELNGAFCMGQCVKGVCIKLDG 57 Query: 155 DTYEDLTPERLE-----EIIDAF 172 + + LTP+ + EI+ Sbjct: 58 EPFS-LTPKDTDSFFHGEILRRL 79 >gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium sp. D12] gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12] Length = 594 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--M 151 + +CG T C+ ++L E + L + C G C P+V M Sbjct: 4 TKIYICGGTGCISSKSKRLKENIEAILASNHLE----NKVEVRLTGCFGFCEKGPIVKIM 59 Query: 152 IGKDTYEDLTPERLEEIID 170 Y ++ P EI++ Sbjct: 60 PDNTFYTEVNPRDAIEIVE 78 >gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] Length = 626 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148 + +CG T C+ G K+ + + I Q+ L + D ++ ++ C G C P Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++ I Y + E EEI++ Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111 >gi|288573616|ref|ZP_06391973.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569357|gb|EFC90914.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 85 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + +C + C RG ++ ++ + + L + + C+G C+ P + + Sbjct: 4 HTIVICMGSSCFSRGNQENLQEIKTFLKDNDLED----QVLLKGSRCEGECLKGPNITVD 59 Query: 154 KDTYEDLTPERLEEIIDA 171 + + E + I++ Sbjct: 60 GRLFNGVKRENILSILEE 77 >gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 626 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148 + +CG T C+ G K+ + + I Q+ L + D ++ ++ C G C P Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++ I Y + E EEI++ Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111 >gi|124384163|ref|YP_001027349.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229] gi|238561972|ref|ZP_00441172.2| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4] gi|251767973|ref|ZP_02269015.2| ferredoxin family protein [Burkholderia mallei PRL-20] gi|254177055|ref|ZP_04883712.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399] gi|254207355|ref|ZP_04913706.1| ferredoxin family protein [Burkholderia mallei JHU] gi|254357612|ref|ZP_04973886.1| ferredoxin family protein [Burkholderia mallei 2002721280] gi|124292183|gb|ABN01452.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229] gi|147752897|gb|EDK59963.1| ferredoxin family protein [Burkholderia mallei JHU] gi|148026676|gb|EDK84761.1| ferredoxin family protein [Burkholderia mallei 2002721280] gi|160698096|gb|EDP88066.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399] gi|238523564|gb|EEP87002.1| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4] gi|243061222|gb|EES43408.1| ferredoxin family protein [Burkholderia mallei PRL-20] Length = 108 Score = 48.2 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C G +++ E + + K L G + + C C Sbjct: 10 RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67 Query: 145 VNAPMVM-IGKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V+ Y + ++EI+++ GQ Sbjct: 68 EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 101 >gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] Length = 595 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG T C +++ + + + L + + C G C P+V I Sbjct: 7 ILVCGGTGCESSKSDQIFKNLIAECEAQGLKDT----VQVVKTGCFGFCEQGPIVKILPE 62 Query: 154 KDTYEDLTPERLEEIIDA 171 Y ++PE +E+I Sbjct: 63 DSFYVRVSPEDAKELISE 80 >gi|239904992|ref|YP_002951731.1| hypothetical protein DMR_03540 [Desulfovibrio magneticus RS-1] gi|239794856|dbj|BAH73845.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 80 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C RG K + + + + ++ C+ C P + I Sbjct: 2 KHEIVICMGSSCFARGNRKHLLMIEQYLA--DHGLSE--SVVLTGSRCEDQCRCGPNIRI 57 Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175 Y D+ ERL E++ G Sbjct: 58 DGQLYGDINGERLLELLSRHLAG 80 >gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] Length = 624 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 13/116 (11%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL---HRNSD-GTLSWEEVECQ 141 + G + VC T C+ G + R + D + + CQ Sbjct: 17 RDRKDGYTCRILVCAGTGCVATGSLDVYSQLRELCKEDEGIRVELEKDVPHIGIVKSGCQ 76 Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 G C P+V I Y + PE EEI++ T++ G ++R+ G Sbjct: 77 GFCELGPLVRIEPQHCQYVKVQPEDCEEIVEK-------TVKQGIPVERLFYKKEG 125 >gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148 + +CG T C+ G K+ + + I Q+ L + D ++ ++ C G C P Sbjct: 27 ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++ I Y + E EEI++ Sbjct: 87 LLRIEPEGILYIKVKLEDCEEIVEK 111 >gi|226355039|ref|YP_002784779.1| ferredoxin [Deinococcus deserti VCD115] gi|226317029|gb|ACO45025.1| putative Ferredoxin [Deinococcus deserti VCD115] Length = 120 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMV 150 TR H+ VC + C RG L + + ++ L G++ C GAC + P + Sbjct: 8 TRGHLLVCQGSSCQARGSSLLHQALWKHLEREALSYYKQGGSVRLTTSGCLGACNHGPTM 67 Query: 151 MI 152 + Sbjct: 68 CV 69 >gi|188996507|ref|YP_001930758.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237755692|ref|ZP_04584301.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5] gi|188931574|gb|ACD66204.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237692142|gb|EEP61141.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5] Length = 108 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 18/88 (20%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL---SWEEVECQGACV 145 HV VC C +G +++ + + K G + C G C+ Sbjct: 6 HVFVCMQRKPPGMPSCGDKGSDQIFMKFQEALMTK-------GLFNKMAVTATGCLGPCM 58 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P V++ Y ++TP +EEI+ Sbjct: 59 FGPNVVVYPDAIWYGNVTPADVEEIVQK 86 >gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 617 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 11/113 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + V T + G EK++ + ++ + L D + C G C P+V I Sbjct: 21 RPRIVVGLGTCGIAAGGEKVMAAIKEQVAARGLDV--DVDFT----SCIGMCYREPLVEI 74 Query: 153 G-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200 Y D+ P+++E +I++ + P GL ++ Sbjct: 75 SLPGRPSVIYGDIFPDKVERLIESHLIKGEPVFEWAAMQITEGAEPYDGLVTM 127 >gi|307728306|ref|YP_003905530.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003] gi|323524596|ref|YP_004226749.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001] gi|307582841|gb|ADN56239.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003] gi|323381598|gb|ADX53689.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001] Length = 107 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 23/108 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C + + E + + K L G Sbjct: 3 SFY----------KYHVFFCLNQREPGAERPSCANCNAQAMQEHAKKR--VKKLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 + + C C P +++ Y + ++EI+D+ + G+ Sbjct: 51 QVRINKAGCLDRCELGPALVVYPEGVWYTYVDESDIDEIVDSHLANGK 98 >gi|125995227|dbj|BAF47142.1| hypothetical protein [Gloeothece sp. KO68DGA] Length = 197 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 + + +C + C RG +L + + + + ++ E+ CQ C AP Sbjct: 110 KKGKILLCNKSDCAKRGGRELYQTLQKTLCNLGLQDH-------VTIEKTSCQKRCGKAP 162 Query: 149 --MVMIGKDTYEDLTPERLEEIIDA 171 ++M GK P+ + E+++ Sbjct: 163 NLILMPGKARLSKPNPKTISELLED 187 >gi|302339760|ref|YP_003804966.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293] gi|301636945|gb|ADK82372.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293] Length = 93 Score = 48.2 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 18/86 (20%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC---QGACVN-- 146 + HV VC T C RG +L+E R + K EE+ C C + Sbjct: 9 AKMHVSVCMGTNCTFRGASQLMETLRAEEGIKDHCI-------IEEMSCPDEL--CDHSR 59 Query: 147 -APMVMIGKDTYEDLTPERLEEIIDA 171 +P+V I D PE I+D Sbjct: 60 RSPVVKIDDDYVMQAKPE---AILDE 82 >gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] Length = 597 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V +C T C+ G +I++ + + D + C+G C P ++ Sbjct: 5 AKKQVFICAGTGCISSGANTIIDLINVE--IERRGLAKD--VELIATGCRGFCEQGPTLV 60 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 I + Y + PE + E+++ QG+ + +D S PA Sbjct: 61 IEPAQRFYRRIQPEDIPELVEK-ELAQGEKVERLFYVDPQSGEPA 104 >gi|115352996|ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria AMMD] gi|115282984|gb|ABI88501.1| ferredoxin-like protein [Burkholderia ambifaria AMMD] Length = 105 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQRDPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|257387914|ref|YP_003177687.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halomicrobium mukohataei DSM 12286] gi|257170221|gb|ACV47980.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halomicrobium mukohataei DSM 12286] Length = 410 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + D ++ C G C PMV + Sbjct: 319 HVAVCTNQTCAADGSAAVLERLRQA---ERDSEACDARVT--RSSCLGRCGEGPMVAVYP 373 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y + + E I+ + Sbjct: 374 DGVWYGGVGEDDAERIVSS 392 >gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] Length = 599 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 + +V VC T C G ++E + + H+ + + + C G C N P+V Sbjct: 2 KQNVLVCCGTGCRANGSLLVLEALQKAARKHKSDIEVSPL----IKSTGCNGFCENGPIV 57 Query: 151 MIG--KDTYEDLTPERLEEIIDA 171 I +Y + PE + II Sbjct: 58 KIEPADISYYKVKPEDADSIIKD 80 >gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + P + + +C + C+ G ++I + +I ++ L D C G C Sbjct: 20 RRDP--DKPCISICAGSGCVASGALEVIAAFKAEIEKQGLAATVDTK----GTGCPGFCE 73 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+V+I + Y + PE + EII Sbjct: 74 RGPVVVIYPEEICYLQVMPEDVPEIISQ 101 >gi|24158931|pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The Cys59ser Variant Of The Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus gi|24158932|pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The Cys59ser Variant Of The Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus Length = 110 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158 C RG ++ + KI P C A + P+V++ Y Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNASMMGPVVVVYPDGVWYG 75 Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181 + PE ++EI++ G R Sbjct: 76 QVKPEDVDEIVEKHLKGGEPVER 98 >gi|119509521|ref|ZP_01628669.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414] gi|119465927|gb|EAW46816.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414] Length = 110 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V+VC C +G K++ + ++ C G C N PMV++ Sbjct: 21 CVRVCQNRTCKKQGAAKVLAAFATFLVPD---------VTVTASGCLGQCGNGPMVLVLP 71 Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175 Y + P+ + +++ G Sbjct: 72 DMVWYSGVRPDEVPLVVEQHLLG 94 >gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 623 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIE---VCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150 V VC T C+ G +K+ E V +I + D + + CQG C P++ Sbjct: 26 RVLVCSGTGCIASGAQKIYEEMSVLCERIDGVTVEMQKDVPHVGVIKTGCQGLCELGPLM 85 Query: 151 MIG--KDTYEDLTPERLEEIIDA 171 I Y + PE +EI++ Sbjct: 86 RIEPYDYQYVHVQPEDCKEIVER 108 >gi|170704065|ref|ZP_02894700.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10] gi|171320086|ref|ZP_02909154.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5] gi|172061848|ref|YP_001809500.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6] gi|170131026|gb|EDS99718.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10] gi|171094683|gb|EDT39729.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5] gi|171994365|gb|ACB65284.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6] Length = 105 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|257463868|ref|ZP_05628254.1| hypothetical protein FuD12_08469 [Fusobacterium sp. D12] Length = 73 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 12/72 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC C R K+ E + EEV C G C P V I Sbjct: 9 KVIVCRGVSCG-RKNRKMWETLSEREDII-----------LEEVRCFGQCKKGPNVKIDG 56 Query: 155 DTYEDLTPERLE 166 Y + E++E Sbjct: 57 QMYHFMDLEKVE 68 >gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 599 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V VC T C + +LI +I L + C G C P + Sbjct: 4 KRTQVLVCAGTGCTIGNSGELITEFEKEIKALGLE----KEVEVLRTGCLGLCGVGPNIS 59 Query: 152 I--GKDTYEDLTPERLEEII 169 I Y+ + ++EI+ Sbjct: 60 IYPDNIIYKTVQVSDVKEIV 79 >gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 597 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VC T C K+++ + L + + C G C P+V++ Sbjct: 5 RAHVLVCAGTGCTSSNSLKIMDEMEALLASNGLES----EVKIVKTGCFGLCAEGPIVVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + +EI++ Sbjct: 61 YPEGAMYTRVEVSDAKEIVEE 81 >gi|218439690|ref|YP_002378019.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424] gi|218172418|gb|ACK71151.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424] Length = 104 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V VC + C+++G K++ + L D T CQG C +P V I Sbjct: 9 CVMVCQHSSCIVQGSAKILLAFQ-------LADLPDDTF-VMASGCQGQCSTSPTVRIIP 60 Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185 + Y + + + +I++ GQ T + P+ Sbjct: 61 DETWYYRVQLDDVNKIVEQHLKAGQPVTEKLHPR 94 >gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519] gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii] Length = 576 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 14/76 (18%) Query: 103 PC-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYED 159 C G K+++ D +E C G C P++ I + Y Sbjct: 9 SCGFAAGAHKVMDELEQI---------KDIQFEYEITGCIGMCHLEPIMEIHDNGEMYRF 59 Query: 160 LT--PERLEEIIDAFS 173 + PE + I++ + Sbjct: 60 VKVMPEDVRPILEDYK 75 >gi|332830634|gb|EGK03240.1| hypothetical protein HMPREF9455_00628 [Dysgonomonas gadei ATCC BAA-286] Length = 101 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 22/99 (22%) Query: 94 AHVQVCGT--TP------CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142 + VC + C +G ++ + + C Sbjct: 6 YMIMVCNSYRVAGDAQGFCNKQGATSFVQYISEECSDRAINAVVTT---------TACLS 56 Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179 C P+V+I Y +T ++L+EI+DA G+ + Sbjct: 57 VCSQGPVVVIQPNNFWYGGVTEDKLDEILDALEEGKAVS 95 >gi|328952093|ref|YP_004369427.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109] gi|328452417|gb|AEB08246.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109] Length = 111 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 15/92 (16%) Query: 94 AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ VC + C+ + ++L+ +++ + + + C C Sbjct: 16 YHIFVCMSFRGLEPKGKCIRKNAQELLSYLESELADRGM-----NNVMVSTTGCLKLCDK 70 Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTG 175 P+V++ Y + E ++ I+DA G Sbjct: 71 GPVVVVYPNGYWYAGVDGEGAVDAILDALENG 102 >gi|302037414|ref|YP_003797736.1| sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii] gi|300605478|emb|CBK41811.1| Sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii] Length = 393 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C RG LI R + D ++ C G C P V + Sbjct: 302 HVLVCVNADCADRGSVTLIATLRRLLKDAGREV--DIKVT--RTLCMGRCGEGPTVAVYP 357 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y + E++D Sbjct: 358 DGIWYRGVQETDARELVDE 376 >gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 625 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + VCG T CM +KLI + ++ + ++ C G C P+V Sbjct: 32 EYREILVCGGTGCMSSQSQKLI----DNLNAEIAKAGLSDKVNAHITGCFGFCEQGPIVK 87 Query: 152 I--GKDTYEDLTPERLEEIID 170 + Y + PE E++ Sbjct: 88 VFPDDVFYVQVAPEDAAELVK 108 >gi|167585313|ref|ZP_02377701.1| Ferredoxin-like protein [Burkholderia ubonensis Bu] Length = 105 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGK 98 >gi|94309172|ref|YP_582382.1| ferredoxin-like protein [Cupriavidus metallidurans CH34] gi|93353024|gb|ABF07113.1| putative ferredoxin (modular protein) [Cupriavidus metallidurans CH34] Length = 134 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 15/89 (16%) Query: 94 AHVQVC-----GTTPCML-RGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144 HV C + C + + E + ++ G + + C C Sbjct: 35 HHVFFCLNQRDDGSACCADHNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 90 Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + + ++EII++ Sbjct: 91 ELGPVLVVYPEAVWYTFVDEQDIDEIIES 119 >gi|254425178|ref|ZP_05038896.1| hypothetical protein S7335_5341 [Synechococcus sp. PCC 7335] gi|196192667|gb|EDX87631.1| hypothetical protein S7335_5341 [Synechococcus sp. PCC 7335] Length = 212 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 14/88 (15%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + VC + C +G +K+ + + + + C C P V++ Sbjct: 127 TRILVCQKSSCRKKGSQKVSDAMEK--AIANAEASD--QVIVKSTGCLKCCKTGPTVVVL 182 Query: 153 --GK-------DTYEDLTPERLEEIIDA 171 + + +TP+ ++I+ + Sbjct: 183 PANDKNKKTSKERHRKVTPKAAKKIVAS 210 >gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii DSM 18315] Length = 400 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153 + VCG T C E +++ + + ++ L + C G C P+V M+ Sbjct: 8 ILVCGGTGCRASQSELILQNLKEAVERQGLQET----VQVIRTGCFGFCEKGPVVKMVPD 63 Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176 Y + P +I+ + G+ Sbjct: 64 NTFYVQVKPTDAVDIVREHLVKGR 87 >gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] Length = 597 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V +C T C+ G +I++ + + D + C+G C P ++ Sbjct: 5 AKKQVFICAGTGCISSGANTIIDLMNVE--IERQGLAKD--VELIATGCRGFCEQGPTLV 60 Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 I + Y + PE + E+++ QG+ + +D S PA Sbjct: 61 IEPAQRFYRRIQPEDIPELVEK-ELAQGEKVERLFYVDPQSGEPA 104 >gi|304439875|ref|ZP_07399769.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371614|gb|EFM25226.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 92 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACV-----N 146 V VC + C + G ++ + N++ S L +C C Sbjct: 2 KVTVCMGSRCTMMGANQIYDQLEYIANELCGPESELCSSKNLELNISKCLNLCKGENERK 61 Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFS 173 AP+V+I + + TP+ + E++++A Sbjct: 62 APIVVIDDEIVYNATPQVVSEKVMEALR 89 >gi|196228397|ref|ZP_03127264.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus Ellin428] gi|196227800|gb|EDY22303.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus Ellin428] Length = 168 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 ++VC C G ++L + + + + GT+ E C C P Sbjct: 93 IRVCNKKNCWRNGGKELWDALEDTLA-RQGLT---GTIPLEGAHCLDHCKRGPNAEWRGH 148 Query: 156 TYEDLTPERLEEII 169 + TP E I+ Sbjct: 149 DFHHCTPRDAERIV 162 >gi|310779196|ref|YP_003967529.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926] gi|309748519|gb|ADO83181.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926] Length = 102 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 14/100 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C+ + +I+ + + G + C Sbjct: 4 PKHHIFVCSSSRINGQQKGYCLQKESVTIIQNFMEE--IDDRDLS--GEIMVTNTGCLAI 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C P+V++ Y +TP+ +EEI+D+ G R Sbjct: 60 CDKGPIVIVYPEGVWYGSVTPDDVEEIMDSHIEGGKPVER 99 >gi|110668920|ref|YP_658731.1| cobalamin cluster protein CbiX ( ferredoxin-like iron-sulfur protein) [Haloquadratum walsbyi DSM 16790] gi|109626667|emb|CAJ53134.2| conserved cobalamin cluster protein CbiX (probable ferredoxin-like iron-sulfur protein) [Haloquadratum walsbyi DSM 16790] Length = 418 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R + + C G C + PMV + Sbjct: 329 HVTVCMNQTCAADGAASVLEQLRQ-----SARDSDACDVRITRSSCLGRCGDGPMVAVYP 383 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y + E EI+ + Sbjct: 384 DGVWYGSVDDEGATEIVSS 402 >gi|323483910|ref|ZP_08089285.1| hypothetical protein HMPREF9474_01034 [Clostridium symbiosum WAL-14163] gi|323693499|ref|ZP_08107706.1| hypothetical protein HMPREF9475_02569 [Clostridium symbiosum WAL-14673] gi|323402748|gb|EGA95071.1| hypothetical protein HMPREF9474_01034 [Clostridium symbiosum WAL-14163] gi|323502456|gb|EGB18311.1| hypothetical protein HMPREF9475_02569 [Clostridium symbiosum WAL-14673] Length = 81 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEEVECQGACVNAPMVM 151 V +C + C L+G ++I+ + DG + C G C+ V Sbjct: 2 RVSICIGSACHLKGSREVIKKLQQL-------VTDNKLDGKVDLNGDFCSGNCLKGVCVT 54 Query: 152 IGKDTYE 158 + + Y Sbjct: 55 VDGELYS 61 >gi|264676433|ref|YP_003276339.1| ferredoxin [Comamonas testosteroni CNB-2] gi|262206945|gb|ACY31043.1| ferredoxin-like protein [Comamonas testosteroni CNB-2] Length = 118 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 G H+ C C L G + + C+ K K G + + Sbjct: 6 NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNK 63 Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C C P+ ++ + Y + ++EI+++ G+ Sbjct: 64 AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKNGK 105 >gi|332711033|ref|ZP_08430968.1| ferredoxin [Lyngbya majuscula 3L] gi|332350159|gb|EGJ29764.1| ferredoxin [Lyngbya majuscula 3L] Length = 107 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 14/100 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMV 150 + V VC C+ G +++ +D S CQG C + P V Sbjct: 13 EKPCVLVCQHKSCLAAGSAEVLAAFEE----------ADLSEFSVIGTTCQGQCSSGPTV 62 Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 I + Y + P+ + I++ G+ + P+I Sbjct: 63 RIVPEETWYCRVKPQDVPVIVEQHLQGGKLVRAKLHPRIH 102 >gi|258514318|ref|YP_003190540.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771] gi|257778023|gb|ACV61917.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771] Length = 102 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 14/94 (14%) Query: 92 TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC ++ C + ++ R +I R G + C G Sbjct: 4 PKKHIFVCTSSRPNGQQKGFCHTKAGVDILNNFREEI----EERGLGGEVFISNTGCFGL 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C P+V++ Y + P+ +EEI+D G Sbjct: 60 CEQGPIVVVYPENVWYGAVVPDDVEEIMDEHIEG 93 >gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 597 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VC T C K+I+ + + L D + + C G C P+V++ Sbjct: 5 RAHVLVCAGTGCTSSNSLKIIDEMESLLVSNRL----DSEVQIVKTGCFGLCAEGPIVVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + ++EI++ Sbjct: 61 YPEGAMYTRVEISDVKEIVEE 81 >gi|241766086|ref|ZP_04763999.1| ferredoxin-like protein [Acidovorax delafieldii 2AN] gi|241363890|gb|EER59196.1| ferredoxin-like protein [Acidovorax delafieldii 2AN] Length = 119 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ C C G ++ + C+ + K G + + C C P Sbjct: 18 HIFFCLNDRPNGENSCAHHGAQEAFDRCKAQ--VKAAGLAGPGKVRVNKAGCLDRCAAGP 75 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188 + ++ Y + ++EI+++ GQ + + P++ R Sbjct: 76 VAVVYPEGTWYSYVDASDVDEIVESHLKNGQIVERLLTPPELGR 119 >gi|307154991|ref|YP_003890375.1| hypothetical protein Cyan7822_5219 [Cyanothece sp. PCC 7822] gi|306985219|gb|ADN17100.1| conserved hypothetical protein [Cyanothece sp. PCC 7822] Length = 96 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 11/86 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V +C C G ++ E+ + N + +V C G C N PMV+I Sbjct: 8 KVLICCNRTCRKSGSSRIFEIFK---------TNPIPEVEVIKVGCLGECGNGPMVLILP 58 Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGD 178 + Y + P+ + II G Sbjct: 59 EEIWYWQVQPDEVSMIIQKHLRGHSP 84 >gi|119356570|ref|YP_911214.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266] gi|119353919|gb|ABL64790.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266] Length = 102 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 20/99 (20%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQ 141 + H+ VC TP C + LI +++ + G ++ C Sbjct: 4 PKHHIFVCGSFRAQGTPQGICHKKESLSLIPYFESEL-------SDRGMSDVAVSATGCL 56 Query: 142 GACVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177 C P+V+I Y ++ E+++EI+DA G+ Sbjct: 57 NICEKGPVVVIYPENFWYGEVDSEEKVDEILDALEEGEA 95 >gi|121605052|ref|YP_982381.1| hypothetical protein Pnap_2152 [Polaromonas naphthalenivorans CJ2] gi|120594021|gb|ABM37460.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 116 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 93 RAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149 + H+ VC C G + L + +K LH DG + + V C AC P+ Sbjct: 13 KRHLLVCIGPRCTQDGASQDLFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPV 69 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQID 187 + + Y ++T ++ II G + GP Sbjct: 70 MCVQPDGTWYYNVTSANMDRIIGQHLVGGQPVEDLVFHQGPDGG 113 >gi|91781626|ref|YP_556832.1| putative ferredoxin [Burkholderia xenovorans LB400] gi|91685580|gb|ABE28780.1| Putative ferredoxin [Burkholderia xenovorans LB400] Length = 107 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 22/102 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C +++ E + + K L G Sbjct: 3 SFY----------KYHVFFCLNQREPGAERPSCANCNAQEMQEHAKKR--VKKLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 + + C C P +++ Y + ++EI+D+ Sbjct: 51 QVRINKAGCLDRCELGPALVVYPEGVWYTYVDESDIDEIVDS 92 >gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus torques L2-14] Length = 622 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRN------KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 + VCG T C+ G +K+ + + K + + C G C P Sbjct: 26 CILVCGGTGCLAGGSDKIYARLKELTSNMDHVTVKIGE--EIAHVGLKMSGCHGFCEMGP 83 Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171 +V I Y + E EEI + Sbjct: 84 LVRIEPYNYLYLKVKLEDCEEIFEK 108 >gi|144899663|emb|CAM76527.1| ferredoxin 2fe-2s [Magnetospirillum gryphiswaldense MSR-1] Length = 113 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R H +C C RG E L + + +K + G + C C Sbjct: 12 RIHAFICTNRRADDHPRGSCAARGSEPLRDYLKAAAKKKGV-----GGVRVNAAGCLDRC 66 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P+++I Y + E ++EIID G G R Sbjct: 67 ELGPVLVIYPEGIWYGFNSREDIDEIIDTHLLGGGRVTR 105 >gi|325519252|gb|EGC98702.1| 2Fe-2S ferredoxin [Burkholderia sp. TJI49] Length = 105 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ GQ Sbjct: 65 EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGQ 98 >gi|325284075|ref|YP_004256616.1| putative ferredoxin [Deinococcus proteolyticus MRP] gi|324315884|gb|ADY26999.1| putative ferredoxin [Deinococcus proteolyticus MRP] Length = 124 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 87 LSPVGTRA-----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVEC 140 ++ G + H+ VC C RG + L + + ++ L + G + C Sbjct: 1 MTKAGPKYFPTAGHLLVCQGQSCQARGSQLLYQALWQALDREHLAYYKAGGQVRLTGSGC 60 Query: 141 QGACVNAPMVMI 152 GAC P V + Sbjct: 61 LGACSFGPTVCV 72 >gi|289549145|ref|YP_003474133.1| ferredoxin 2Fe-2S [Thermocrinis albus DSM 14484] gi|289182762|gb|ADC90006.1| ferredoxin, 2Fe-2S [Thermocrinis albus DSM 14484] Length = 110 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C RG +++ K+ P ++ C AC P+V++ Y ++ Sbjct: 21 SCSDRGSRDVLQRLMEKVQFDP-ELFMSTMVT--PTGCLNACGAGPIVVVYPEGVWYGNV 77 Query: 161 TPERLEEIIDAFSTGQGDTIR 181 PE ++EI++ G R Sbjct: 78 RPEDVDEIVEKHLKGNEPVER 98 >gi|147676362|ref|YP_001210577.1| hypothetical protein PTH_0027 [Pelotomaculum thermopropionicum SI] gi|146272459|dbj|BAF58208.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 93 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +Q+C + C LRG ++IE I+ H D + + C C + + IG Sbjct: 3 VIQICVGSSCFLRGSREVIETVEKLIN----HYRLDDVVVLKGSFCMEHCNDGVTLKIGD 58 Query: 155 DTYEDLTPERLEEIIDA 171 T+ + E + + + Sbjct: 59 KTFTGVNRESITGLFEK 75 >gi|89899956|ref|YP_522427.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118] gi|89344693|gb|ABD68896.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118] Length = 103 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 23/51 (45%) Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92 ++ +L QE GW+ RA + V A L + V FY F PVG Sbjct: 24 LVQILRETQELAGWLFRAVLGVGARELTLNLAHVEVAVGFYRFFHTRPVGR 74 >gi|221211093|ref|ZP_03584072.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1] gi|221168454|gb|EEE00922.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1] Length = 143 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 45 HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 102 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 103 EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGK 136 >gi|46395074|gb|AAS91671.1| 2Fe2S ferredoxin [Clostridium beijerinckii] Length = 102 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------KPLHRNSDGTLSWEEVECQGACVN 146 + H+ VC C + G +K + ++ + + R+ + C G C Sbjct: 5 KHHIFVC--ASCRVNGMQKGMCYSKDSVKVVQKFMEEVEERDLINEVMVTNTGCLGVCNK 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+V++ Y ++ E +E I++ G Sbjct: 63 GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93 >gi|119717108|ref|YP_924073.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614] gi|119537769|gb|ABL82386.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614] Length = 226 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 15/89 (16%) Query: 90 VGTRAHVQVCGTTPCMLRGCEK-----LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 G R V VC C G ++ + +++ D + CQ C Sbjct: 129 AGHRHQVMVCRGPRCTAMGQVDNLRAMVVALVEHQLG--------DNDVLLVHTGCQSPC 180 Query: 145 VNAPM--VMIGKDTYEDLTPERLEEIIDA 171 AP+ V Y + P I+ Sbjct: 181 NQAPVISVQPDDVWYGGVDPAMASLIVAE 209 >gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Synergistetes bacterium SGP1] Length = 628 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 24/115 (20%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGTLSWEEVECQGA 143 V VC T C+ G K+ + R ++ +P HR L ++ C G Sbjct: 27 KVVVCCGTGCVAGGSLKIYDRLRELCEGAGLSVSVELGLEPGHR----DLGMKKSGCIGF 82 Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 C P++ I Y ++ E +EI + + +G+ + ++R+ GG Sbjct: 83 CEMGPLLHIQPLDVLYTRVSLEDCQEIFE--RSLKGNEV-----VERLLYRAEGG 130 >gi|254442378|ref|ZP_05055854.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium DG1235] gi|198256686|gb|EDY80994.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium DG1235] Length = 103 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 17/94 (18%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLS---WEEVECQGACV 145 H+ +CG+ R +L VC NK + D LS C C Sbjct: 6 HHLFICGS----ARASGELQGVCCNKDSVALLSYTQGEV-QDRMLSGVEVSMTGCLNMCT 60 Query: 146 NAPMVMIG---KDTYEDLTPERLEEIIDAFSTGQ 176 P+V I YE+ T E ++EI+DA G+ Sbjct: 61 RGPVV-IDYPSGHYYENATEELIDEILDAIEDGE 93 >gi|326315216|ref|YP_004232888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372052|gb|ADX44321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 116 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 14/115 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 SP H+ C C G ++ + C+ + K G + + Sbjct: 4 DTSPSRGYYARHIFFCLNDRINGEDSCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNK 61 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188 C C P+ ++ Y + ++EI+++ GQ + + P++ R Sbjct: 62 AGCLDRCAGGPVAVVYPEGTWYTYVDTSDIDEIVESHLKNGQVVERLLTPPELGR 116 >gi|255523560|ref|ZP_05390528.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|296186478|ref|ZP_06854881.1| hypothetical protein CLCAR_1930 [Clostridium carboxidivorans P7] gi|255512817|gb|EET89089.1| conserved hypothetical protein [Clostridium carboxidivorans P7] gi|296048925|gb|EFG88356.1| hypothetical protein CLCAR_1930 [Clostridium carboxidivorans P7] Length = 84 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + VC + C L+G K+I + I Q L + + + C G C V I Sbjct: 2 VTISVCVGSACHLKGSYKVINSLQKLISQYKLEAS----VELKGAFCLGHCTEGVSVKID 57 Query: 154 KD 155 ++ Sbjct: 58 EE 59 >gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] Length = 635 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C + E + + + + + C G C P+V Sbjct: 42 EHLQILICGGTGCKASDSHIIAERLQQALERNNIA----NKVDVITTGCFGFCEKGPIVK 97 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175 I Y + P+ +E++ G Sbjct: 98 IIPDNTFYTQVVPDDADEVVREHIIG 123 >gi|254247083|ref|ZP_04940404.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184] gi|124871859|gb|EAY63575.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184] Length = 151 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 53 HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 110 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 111 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 144 >gi|189346133|ref|YP_001942662.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245] gi|189340280|gb|ACD89683.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245] Length = 100 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 12/86 (13%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 AHV VC C E + + + +K G + C G C Sbjct: 11 AHVFVCTNDRRGARKSCADDNSELVKAALKRVVDEKGWK----GNVRVSTSGCMGLCATG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P VMI K + ++P+ ++ I+ A Sbjct: 67 PNVMIYPQKVLFSGVSPDDVDGIVSA 92 >gi|313889054|ref|ZP_07822712.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844927|gb|EFR32330.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 90 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 9/88 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSDGTLSWEEVECQGACVN----- 146 V +C C L G + + ++ + S L E C C Sbjct: 2 KVTICMGARCTLMGANAIYDAVEYLQDHLCGPESELCSAENLEVEFAHCLNYCKIHNNEA 61 Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFS 173 +P+V++ + T + + +IID Sbjct: 62 SPVVIVDDEIMLKATAQEVSAKIIDKLR 89 >gi|167750543|ref|ZP_02422670.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702] gi|167656469|gb|EDS00599.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702] gi|291530238|emb|CBK95823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum 70/3] gi|291557050|emb|CBL34167.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum V10Sc8a] Length = 82 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C + C L+G K+IE+ ++ I + ++ C G C + + I + Sbjct: 4 ISICVGSSCHLKGSYKIIELAKDYIANHNIGD----KVNLGAAFCLGRCTDGVTIKIDDE 59 Query: 156 TYEDLTPERLEEIIDA 171 + ++I D Sbjct: 60 IICGVNENNFQQIFDE 75 >gi|221069458|ref|ZP_03545563.1| ferredoxin-like protein [Comamonas testosteroni KF-1] gi|220714481|gb|EED69849.1| ferredoxin-like protein [Comamonas testosteroni KF-1] Length = 118 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 G H+ C C L G + + C+ K K G + + Sbjct: 6 NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGQVRVNK 63 Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C C P+ ++ + Y + ++EI+++ G+ Sbjct: 64 AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKNGK 105 >gi|161523588|ref|YP_001578600.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616] gi|189351642|ref|YP_001947270.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616] gi|221199885|ref|ZP_03572928.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M] gi|221207447|ref|ZP_03580456.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2] gi|160341017|gb|ABX14103.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616] gi|189335664|dbj|BAG44734.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616] gi|221172650|gb|EEE05088.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2] gi|221180124|gb|EEE12528.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M] Length = 105 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGK 98 >gi|119899827|ref|YP_935040.1| ferredoxin [Azoarcus sp. BH72] gi|119672240|emb|CAL96154.1| conserved hypothetical ferredoxin [Azoarcus sp. BH72] Length = 130 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%) Query: 87 LSPVGTRA--HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEE--VECQ 141 + P H+ VC C + + + + D G L + V C Sbjct: 17 VKPKLGHYRRHLLVCTGPRCS---ADGEAQALFDSLGATFKAAGLDQGELRVKRTRVSCF 73 Query: 142 GACVNAP--MVMIGKDTYEDLTPERLEEIIDAFSTG 175 AC P V Y ++TPE + I+D G Sbjct: 74 AACKGGPILCVQPDGVWYYNVTPENMRRIVDRHLVG 109 >gi|78067707|ref|YP_370476.1| ferredoxin-like [Burkholderia sp. 383] gi|77968452|gb|ABB09832.1| Ferredoxin-like protein [Burkholderia sp. 383] Length = 105 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCDAQSMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|125972952|ref|YP_001036862.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC 27405] gi|256005708|ref|ZP_05430664.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium thermocellum DSM 2360] gi|281417162|ref|ZP_06248182.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|125713177|gb|ABN51669.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC 27405] gi|255990339|gb|EEU00465.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium thermocellum DSM 2360] gi|281408564|gb|EFB38822.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|316940812|gb|ADU74846.1| hypothetical protein Clo1313_1790 [Clostridium thermocellum DSM 1313] Length = 81 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV-NAPMVMIGK 154 +++C + C L+G +I ++ I +K LH + + C C N V + Sbjct: 4 IKICVGSSCHLKGSYNVINEFQHLIEEKALHD----KIDIKATFCMKQCQKNGVAVEVNN 59 Query: 155 DTYEDLTPERLEE 167 + + L PE EE Sbjct: 60 EIFGVL-PEAAEE 71 >gi|78188014|ref|YP_378352.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3] gi|78170213|gb|ABB27309.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3] Length = 100 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 12/85 (14%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 AHV VC C E + + + K G + C G C Sbjct: 11 AHVFVCTNNRGGERKSCADGKSELVKATLKELVDAKGWK----GKVRVSSAGCLGVCSAG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIID 170 P VMI K + +++ + ++EI+ Sbjct: 67 PNVMIYPQKVWFSNVSLDDVDEIVA 91 >gi|120609033|ref|YP_968711.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1] gi|120587497|gb|ABM30937.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1] Length = 116 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 14/115 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 SP H+ C C G ++ + C+ + K G + + Sbjct: 4 DTSPSRGYYARHIFFCLNDRINGEDSCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNK 61 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188 C C P+ ++ Y + ++EI+++ GQ + + P++ R Sbjct: 62 AGCLDRCAGGPVAVVYPEGIWYTYVDTSDIDEIVESHLKNGQVVERLLTPPELGR 116 >gi|71907117|ref|YP_284704.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB] gi|71846738|gb|AAZ46234.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB] Length = 109 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 20/96 (20%) Query: 89 PVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEE 137 P + + VC P C +GC + + ++ + + Sbjct: 2 PKPKKHVL-VCVQGRPNGHPRGSCQEKGCGQTWQAFSDEF------TTRNLWASGFALTN 54 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C G C P V++ Y + PE + IID Sbjct: 55 TGCLGPCHLGPSVLVYPEGIMYTGVKPEDVGTIIDE 90 >gi|281356041|ref|ZP_06242534.1| hydrogenase large subunit [Victivallis vadensis ATCC BAA-548] gi|281317410|gb|EFB01431.1| hydrogenase large subunit [Victivallis vadensis ATCC BAA-548] Length = 92 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 11/90 (12%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VNA 147 + V++C T C + G +L ++ P S + C C NA Sbjct: 6 KIKVEICLGTTCYVLGSFRLS-ALEEQL---PPELKS--KVDIVGCACLNVCHDRNYGNA 59 Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177 P V IG+ ++ T E++ +I + G Sbjct: 60 PFVRIGERIVDNATVEKVIGVIQEIVSAGG 89 >gi|170691585|ref|ZP_02882750.1| putative ferredoxin [Burkholderia graminis C4D1M] gi|170143790|gb|EDT11953.1| putative ferredoxin [Burkholderia graminis C4D1M] Length = 107 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 23/108 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C + + E + + K L G Sbjct: 3 SFY----------KYHVFFCLNQREPGAERPSCANCNAQAMQEHAKKR--VKKLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 + + C C P +++ Y + ++EI+D+ + G+ Sbjct: 51 QVRINKAGCLDRCELGPTLVVYPEGVWYTYVDESDIDEIVDSHLANGK 98 >gi|146342244|ref|YP_001207292.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. ORS278] gi|146195050|emb|CAL79075.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. ORS278] Length = 120 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 22/110 (20%) Query: 89 PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P + H VC T C G + L + + + C Sbjct: 16 PQLYKYHAFVCLTQRPPGHPRGSCGALGVQPLWDRLTKT--IEAQRLTD---VGVTAAGC 70 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 G C PM+++ Y PE ++EI+++ + G ++DR Sbjct: 71 FGFCSAGPMMVVYPDGIWYRPTKPEDIDEIVESH-------FKQGKRVDR 113 >gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 595 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 + HV +CG T C+ ++ + + +K + + C G C P+V Sbjct: 3 DKKHVLICGGTGCLSSKSRQIADNINTVLKEKGMED----QVEVVLTGCFGFCEKGPIVK 58 Query: 151 -MIGKDTYEDLTPERLEEIIDA 171 M Y ++ PE I++ Sbjct: 59 IMPENTFYVEVKPEDAGRIVEE 80 >gi|283850224|ref|ZP_06367513.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B] gi|283574250|gb|EFC22221.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B] Length = 103 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 17/97 (17%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 R + VC C +G L+ + D C Sbjct: 6 PRYLINVCASFRVKGEAKGICHKKGSHNLLGYFEE------GILDRDIDARVVSTGCMKQ 59 Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P+V++ + ++++E++DA G+ Sbjct: 60 CEEGPIVVVMPENWWYRGIDSEDKVDELLDALENGEA 96 >gi|170734239|ref|YP_001766186.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3] gi|206559100|ref|YP_002229860.1| putative ferredoxin [Burkholderia cenocepacia J2315] gi|169817481|gb|ACA92064.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3] gi|198035137|emb|CAR51011.1| putative ferredoxin [Burkholderia cenocepacia J2315] Length = 105 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQRDPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|153953065|ref|YP_001393830.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555] gi|219853716|ref|YP_002470838.1| hypothetical protein CKR_0373 [Clostridium kluyveri NBRC 12016] gi|146345946|gb|EDK32482.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555] gi|219567440|dbj|BAH05424.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 102 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 15/102 (14%) Query: 90 VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141 V + H+ VC ++ C + ++ ++ + L G + C Sbjct: 2 VNPKYHIFVCTSSRVNGKQQGFCFSKESVDIVSEFMEEVESRDL----SGEVMVTNTGCF 57 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 G C P+V++ Y +T E +EEI+D +G+ ++ Sbjct: 58 GICNRGPIVVVYPEGIWYGGVTAEDVEEIMDKHIE-EGEVVK 98 >gi|113477689|ref|YP_723750.1| hypothetical protein Tery_4280 [Trichodesmium erythraeum IMS101] gi|110168737|gb|ABG53277.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 222 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148 VG +A + VC + C RG K+ + + + L + ++ C C P Sbjct: 137 VGKKAEILVCQKSDCEKRGASKICKALSKALSEHDLQD----QVKIKKTGCLKKCKAGPN 192 Query: 149 -MVMIGKDTYEDLTPERLEEIIDA 171 +VM K Y + + ++I Sbjct: 193 IIVMPQKAKYSRIRSAEIPQVIQK 216 >gi|189346210|ref|YP_001942739.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245] gi|189340357|gb|ACD89760.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245] Length = 102 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGT--LSWEEVECQGACVN 146 + H+ VC + +G + I + + P + G ++ C C Sbjct: 4 PKHHIFVCASF--RAQGAPQGICHKKESLGLIPYLESELSDRGMSDVAVSATACLNLCEK 61 Query: 147 APMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 P+V++ E + ++++EI+DA G+ Sbjct: 62 GPVVVVYPENFWYGEIDSEDKIDEILDALEEGEA 95 >gi|304317221|ref|YP_003852366.1| hypothetical protein Tthe_1785 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778723|gb|ADL69282.1| conserved hypothetical protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 81 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC + C L+G +I + I L + + C G C+ A V I Sbjct: 2 VITVCVGSSCHLKGSYDVINELKKFIKDYNLED----RVELKADFCMGNCLRAVSVKIDD 57 Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176 + P +E+ + G Sbjct: 58 GKCLSIKPNNVEKFFREYVLGN 79 >gi|330818435|ref|YP_004362140.1| Ferredoxin-like protein [Burkholderia gladioli BSR3] gi|327370828|gb|AEA62184.1| Ferredoxin-like protein [Burkholderia gladioli BSR3] Length = 106 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 8 HHVFFCLNQRDPGADRPSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 65 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + + ++EI+++ GQ Sbjct: 66 EGPVMVVYPEGTWYTYVDKQDIDEIVESHLRDGQ 99 >gi|116690914|ref|YP_836537.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424] gi|116649003|gb|ABK09644.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424] Length = 105 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit [Raphidiopsis brookii D9] Length = 533 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 ++ C C+ G + + E I L + + V C C P+V I ++ Sbjct: 22 IRCCTAAGCLSSGSQAVKENLLTSIKAAGLEQ----QVEVVGVGCMRLCCQGPLVEIDEN 77 Query: 156 ------TYEDLTPERLEEIIDAFSTGQGDTIR 181 Y+ +TP+ ++ID+ G+ ++ Sbjct: 78 KSDKITLYQQVTPQDAPKVIDSIK-GKNTNLK 108 >gi|148257146|ref|YP_001241731.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. BTAi1] gi|146409319|gb|ABQ37825.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. BTAi1] Length = 120 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 22/110 (20%) Query: 89 PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P + H VC T C G + L + + G C Sbjct: 16 PQLYKYHAFVCLTQRPPGHPRGSCGALGVQPLWDRLTKT--IEAQRLTDIG---VTAAGC 70 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 G C PM+++ Y PE ++EI+++ + G ++DR Sbjct: 71 FGFCSAGPMMVVYPDGIWYRPTKPEDIDEIVESH-------FKQGKRVDR 113 >gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] Length = 626 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + + + + VCG T C ++ + + +I L D C G C Sbjct: 26 YDNADKNIKKTLLVCGGTGCRASRSLDIVNILKTEIKNAGLENTVD----VISTGCFGFC 81 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII 169 P+V + Y ++ ER + I+ Sbjct: 82 EKGPIVKVVPDNVFYVEVNTERAKLIV 108 >gi|291565748|dbj|BAI88020.1| ferredoxin-like protein [Arthrospira platensis NIES-39] Length = 118 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152 V VC C+ G ++ ++ + +D + E C G C P V + Sbjct: 27 CVLVCQHQSCLRNGSQETLKAFED----------ADIPNVKVEASGCLGQCNIGPTVRVI 76 Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + Y + PE +E I G+ + P+I Sbjct: 77 PDETWYYRVQPEDVEAIASQHLQGGKPVQEKLNPRIH 113 >gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 629 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRN-------SDGTLSWEEVECQGA 143 ++ V +C T C+ G + + + + P + DG + ++ C G Sbjct: 25 SKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEVHFGPEIAHGDGEIGIKKSGCHGF 84 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168 C P++ I Y + E EEI Sbjct: 85 CEMGPLMRIEPQGILYTKVKLEDCEEI 111 >gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] Length = 629 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRN-------SDGTLSWEEVECQGA 143 ++ V +C T C+ G + + + + P + DG + ++ C G Sbjct: 25 SKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEVHFGPEIAHGDGEIGIKKSGCHGF 84 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168 C P++ I Y + E EEI Sbjct: 85 CEMGPLMRIEPQGILYTKVKLEDCEEI 111 >gi|134297082|ref|YP_001120817.1| ferredoxin-like protein [Burkholderia vietnamiensis G4] gi|134140239|gb|ABO55982.1| ferredoxin-like protein [Burkholderia vietnamiensis G4] Length = 105 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98 >gi|56477464|ref|YP_159053.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1] gi|56313507|emb|CAI08152.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1] Length = 106 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 16/90 (17%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143 + HV C T C + +++ + K G + + C Sbjct: 5 KHHVFFCCNQREPGDTCCNNHNATGMQTYAKDRIAALGLKGR-----GKIRINKAGCLDR 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C P++++ Y + E ++EIID Sbjct: 60 CDEGPVLVVYPDNVWYTYIDKEDIDEIIDE 89 >gi|297627550|ref|YP_003689313.1| hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923315|emb|CBL57915.1| Hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 263 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 11/88 (12%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGA 143 +P R H+ VC C +G +++E ++ ++ C Sbjct: 177 QAPPPFRRHLLVCCGVRCNAQGSREVVESMVRTAKELGVVHDEV----LIT--RTLCLFP 230 Query: 144 CVNAPMVM--IGKDTYEDLTPERLEEII 169 C AP+V+ +TP + EI+ Sbjct: 231 CNQAPVVVSYPDNQWRGGVTPAQAAEIV 258 >gi|182680473|ref|YP_001834619.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC 9039] gi|182636356|gb|ACB97130.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC 9039] Length = 110 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%) Query: 89 PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEV 138 P + H+ C T CM RG + L E K+ K P +S Sbjct: 6 PQVFKYHIFTCSTKRPAGHPRGSCMERGAQPLWERLGQKLEAKQLPG-------VSMTMT 58 Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C C P++++ Y PE ++EI+ + Sbjct: 59 GCLSFCQAGPLMVVYPEGIWYHPEKPEDIDEIVQS 93 >gi|299530595|ref|ZP_07044013.1| ferredoxin-like protein [Comamonas testosteroni S44] gi|298721418|gb|EFI62357.1| ferredoxin-like protein [Comamonas testosteroni S44] Length = 118 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 G H+ C C L G + + C+ K K G + + Sbjct: 6 NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNK 63 Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C C P+ ++ + Y + ++EI+++ G+ Sbjct: 64 AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKHGK 105 >gi|82702107|ref|YP_411673.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC 25196] gi|82410172|gb|ABB74281.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC 25196] Length = 103 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 12/94 (12%) Query: 93 RAHVQVC------GTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACV 145 HV C GT C G + + + + + K L + + + C C Sbjct: 5 HRHVFFCVNQREPGTLCCNNFGAQAMRDYAKER--VKALKLDSKNKRIRINNAGCLDRCN 62 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + E ++EII+ G+ Sbjct: 63 EGPVIVVYPEDVWYTYVDKEDIDEIIEEHLKNGR 96 >gi|254251301|ref|ZP_04944619.1| Ferredoxin [Burkholderia dolosa AUO158] gi|124893910|gb|EAY67790.1| Ferredoxin [Burkholderia dolosa AUO158] Length = 105 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQRDPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G Sbjct: 65 EGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGN 98 >gi|187922503|ref|YP_001894145.1| ferredoxin [Burkholderia phytofirmans PsJN] gi|187713697|gb|ACD14921.1| putative ferredoxin [Burkholderia phytofirmans PsJN] Length = 107 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 23/108 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C +++ E + + K L G Sbjct: 3 SFY----------KYHVFFCLNQRDPGAERPSCANCNAQEMQEYAKKR--VKKLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 + + C C P +++ Y + ++EI+D+ + G+ Sbjct: 51 QVRINKAGCLDRCELGPTLVVYPEGIWYTYVDESDIDEIVDSHLANGK 98 >gi|332298650|ref|YP_004440572.1| hypothetical protein Trebr_2026 [Treponema brennaborense DSM 12168] gi|332181753|gb|AEE17441.1| hypothetical protein Trebr_2026 [Treponema brennaborense DSM 12168] Length = 82 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153 ++ C + C +G +++E+ + I + L ++ C G C + IG Sbjct: 2 TIEACMGSSCHAKGAGRILELLKKAIKENGLE----NKVTLAGTLCLGRCGEPGANLKIG 57 Query: 154 KDTYEDLTPERLEEIID 170 + +T E D Sbjct: 58 DEVITGITEANFAEFFD 74 >gi|237795238|ref|YP_002862790.1| hypothetical protein CLJ_B2007 [Clostridium botulinum Ba4 str. 657] gi|229262096|gb|ACQ53129.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 80 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G K+I + +N I + L + + C G C V + Sbjct: 3 IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGHCTEGVSVKVED 58 Query: 155 DTYEDLTPERLEE 167 Y + E +EE Sbjct: 59 KIYS-VNEENVEE 70 >gi|255086707|ref|XP_002509320.1| predicted protein [Micromonas sp. RCC299] gi|226524598|gb|ACO70578.1| predicted protein [Micromonas sp. RCC299] Length = 112 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 13/81 (16%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 V+VC C RG K + + + E+ C G C P V I D Sbjct: 37 VKVCTNKECK-RGGSKKTLALFEALGLEGVE--------IVEIRCLGECGMGPNVQINGD 87 Query: 156 ----TYEDLTPERLEEIIDAF 172 T + +++++D Sbjct: 88 DGPIINGVKTEDDVKKVVDRL 108 >gi|323138486|ref|ZP_08073555.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242] gi|322396282|gb|EFX98814.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242] Length = 112 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 16/109 (14%) Query: 83 TQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134 PV + HV C C+ G + L + + K+ +P+ D +S Sbjct: 2 HMIAELPVVFKYHVFTCFQQRPPGHPRGSCVSAGGKPLWDRLQAKLTAQPI---PD--VS 56 Query: 135 WEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C P++++ Y T ++EII + T +G+ + Sbjct: 57 ITATGCLGFCRAGPLMVVYPEGVWYTPRTEADIDEIIQSHFT-EGNPVE 104 >gi|107023828|ref|YP_622155.1| ferredoxin-like [Burkholderia cenocepacia AU 1054] gi|105894017|gb|ABF77182.1| ferredoxin-like protein [Burkholderia cenocepacia AU 1054] Length = 105 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV C C + + E + + K L G + + C C Sbjct: 7 HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ Y + ++EI+++ G+ Sbjct: 65 EGPVMVVYPEGAWYTYVDQADIDEIVESHLRDGK 98 >gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] Length = 593 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 ++ VCG T C + + + K + +D + + C G C P+V + Sbjct: 5 HYILVCGGTGCESSSADDIFRNLHEE--AKNYNV-AD-KVQIVKTGCFGFCEKGPIVKVL 60 Query: 153 -GKDTYEDLTPERLEEIIDA 171 Y ++ PE ++II Sbjct: 61 PEDSFYVEVKPEDAKDIIAE 80 >gi|320333185|ref|YP_004169896.1| hypothetical protein Deima_0572 [Deinococcus maricopensis DSM 21211] gi|319754474|gb|ADV66231.1| hypothetical protein Deima_0572 [Deinococcus maricopensis DSM 21211] Length = 113 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMI 152 AH+ VC T C RG L N + + L G++ C GAC + P++ + Sbjct: 10 AHLLVCQHTNCASRGSALLHRALWNALERDGLAYYKRGGSVRLTSSGCLGACSHGPVLCV 69 Query: 153 GKDTYEDL 160 +D L Sbjct: 70 YRDAGGRL 77 >gi|163846740|ref|YP_001634784.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl] gi|222524552|ref|YP_002569023.1| hypothetical protein Chy400_1276 [Chloroflexus sp. Y-400-fl] gi|163668029|gb|ABY34395.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl] gi|222448431|gb|ACM52697.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 82 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 26/41 (63%) Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 G L E++C AC + P VM+ D + +TP++L EI+++ Sbjct: 32 GALCIVELDCMAACDDVPAVMLEYDYFPRVTPQQLIEIVES 72 >gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] Length = 592 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +CG T C+ + + E ++ ++ + + C G C P+V + Sbjct: 4 KILICGGTGCLSSKSKDIKENLEKELKERNI-----NDVEVVLTGCFGFCEKGPIVKVVP 58 Query: 153 GKDTYEDLTPERLEEIID 170 + Y ++ PE ++I++ Sbjct: 59 ANNFYIEVKPEDAKKIVE 76 >gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1] Length = 495 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 26/95 (27%) Query: 56 VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115 + + I+++A + Y I +FY+ ++ G ++ C C + E Sbjct: 35 IDKKTIKLLARKFGIPYSETFSIVSFYSLLNVN--GK--NLLSCNAPCC--KNDELFDNA 88 Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 + C G C N+P V Sbjct: 89 IKTH--------------------CLGLCDNSPAV 103 >gi|332701929|ref|ZP_08422017.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay] gi|332552078|gb|EGJ49122.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay] Length = 103 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 17/94 (18%) Query: 95 HVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ VC + C +G L++ + L R DG + C C + Sbjct: 8 HILVCASFRVSGDPKGVCHKKGSTGLLQYIEEGL----LDRGIDGLV--CATGCMKQCDD 61 Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTGQG 177 P++++ Y+ + E +++EI+DA G+ Sbjct: 62 GPIMVVYPQGHWYKAVDSEGKIDEILDACENGEA 95 >gi|320334127|ref|YP_004170838.1| hypothetical protein Deima_1524 [Deinococcus maricopensis DSM 21211] gi|319755416|gb|ADV67173.1| hypothetical protein Deima_1524 [Deinococcus maricopensis DSM 21211] Length = 101 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV--NAPMVMIGKDTY 157 LR E L+EV + + P ++DG G +AP+V + Y Sbjct: 29 DGLDPHLR--EALLEVIWDTLRISPGMVSADGNFELTLTR--GKDDPEDAPVVRLNGLPY 84 Query: 158 EDLTPERLEEII 169 +TP+RL E++ Sbjct: 85 IRVTPQRLHELL 96 >gi|193213270|ref|YP_001999223.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327] gi|193086747|gb|ACF12023.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327] Length = 102 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 16/97 (16%) Query: 92 TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC + C + LI +++ + + + C Sbjct: 4 PKHHIFVCASFRAAGAPQGICHKKEALGLIPYLESELADRGMSDTA-----VSATACLNL 58 Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P+V++ E + ++++EI+DA G+ Sbjct: 59 CEKGPVVVVYPENFWYGEIDSEDKIDEILDALEEGEA 95 >gi|150391757|ref|YP_001321806.1| hypothetical protein Amet_4065 [Alkaliphilus metalliredigens QYMF] gi|149951619|gb|ABR50147.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF] Length = 78 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G ++ ++ + +K L ++ + C G C A V I + Sbjct: 3 TINICIGSACHLKGAYDVVNKFQSIVEEKALED----QVTIKAAFCLGECTKAVSVKIDE 58 >gi|46204209|ref|ZP_00050335.2| COG3411: Ferredoxin [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 103 PCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTY 157 C +G E L E + ++ K + C C P+++I Y Sbjct: 16 SCAQKGSEALREHMKDAQKRLGLKD--------VRINSAGCLDRCGKGPVMVIYPEGVWY 67 Query: 158 EDLTPERLEEIIDAF--STGQGDTIRPGPQ 185 + ++EI+D G+ D + P Sbjct: 68 SFHSVADIDEILDTHIVKGGRVDRLMLAPD 97 >gi|312131825|ref|YP_003999165.1| sucraseferredoxin family protein [Leadbetterella byssophila DSM 17132] gi|311908371|gb|ADQ18812.1| Sucraseferredoxin family protein [Leadbetterella byssophila DSM 17132] Length = 101 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 12/85 (14%) Query: 95 HVQVCGT---TPCMLRGCEK---LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C P G E+ L+ + + K+ +K L++ + ++ C C P Sbjct: 6 HVFICTNDKVAPKKCCGSERGMILVNLFKEKMKEKGLNKT----MRAQKTGCLDVCAFGP 61 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 +++ Y ++TPE ++EII++ Sbjct: 62 GMVVYPEGVFYGNVTPEDVDEIIES 86 >gi|148379789|ref|YP_001254330.1| hypothetical protein CBO1829 [Clostridium botulinum A str. ATCC 3502] gi|153933205|ref|YP_001384086.1| hypothetical protein CLB_1764 [Clostridium botulinum A str. ATCC 19397] gi|153936655|ref|YP_001387626.1| hypothetical protein CLC_1771 [Clostridium botulinum A str. Hall] gi|148289273|emb|CAL83369.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929249|gb|ABS34749.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152932569|gb|ABS38068.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 80 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G K+I + +N I + L + + C G C V I Sbjct: 3 IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGYCTEGVSVKIQD 58 Query: 155 DTYEDLTPERLEE 167 Y + E +EE Sbjct: 59 KIYS-VNEENVEE 70 >gi|153940562|ref|YP_001391084.1| hypothetical protein CLI_1824 [Clostridium botulinum F str. Langeland] gi|168180403|ref|ZP_02615067.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|168184887|ref|ZP_02619551.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|170754407|ref|YP_001781377.1| hypothetical protein CLD_2811 [Clostridium botulinum B1 str. Okra] gi|226949070|ref|YP_002804161.1| hypothetical protein CLM_1986 [Clostridium botulinum A2 str. Kyoto] gi|152936458|gb|ABS41956.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|169119619|gb|ACA43455.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] gi|182668649|gb|EDT80627.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182672079|gb|EDT84040.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|226842396|gb|ACO85062.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] gi|295319131|gb|ADF99508.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 80 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G K+I + +N I + L + + C G C V I Sbjct: 3 IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGYCTEGVSVKIED 58 Query: 155 DTYEDLTPERLEE 167 Y + E +EE Sbjct: 59 KIYS-VNEENVEE 70 >gi|24158929|pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The Cys55ser Variant Of The Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus gi|24158930|pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The Cys55ser Variant Of The Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus Length = 110 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158 C RG ++ + KI P AC+ P+V++ Y Sbjct: 21 SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGSMNACMMGPVVVVYPDGVWYG 75 Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181 + PE ++EI++ G R Sbjct: 76 QVKPEDVDEIVEKHLKGGEPVER 98 >gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 624 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCR---NKIHQKPL-HRNSDGTLSWEEVECQGACVNAP--M 149 + VC T C +G K+ E R + + K + + + C G C + P + Sbjct: 28 IYVCVGTGCAAKGSIKVYEELRRIFKENNVKANLQKLEEKEERVRKTGCCGRCSSGPWVI 87 Query: 150 VMIGKDTYEDLTPERLEEIIDA 171 VM Y ++ PE ++EI + Sbjct: 88 VMPYGYFYSEVKPEDVKEIYEE 109 >gi|67922918|ref|ZP_00516415.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501] gi|67855268|gb|EAM50530.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501] Length = 197 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150 + +C + C RG +KL V + + ++ ++ CQ C AP + Sbjct: 116 ILICNKSDCAKRGGKKLYGVLEKTISNLGLEKH-------VTIQKTGCQKRCGKAPNMIL 168 Query: 151 MIGKDTYEDLTPERLEEIIDA 171 M G+ + P+ + +++ Sbjct: 169 MPGRSKHSKPNPKNIAGLLEE 189 >gi|300692698|ref|YP_003753693.1| ferredoxin [Ralstonia solanacearum PSI07] gi|299079758|emb|CBJ52434.1| putative ferredoxin [Ralstonia solanacearum PSI07] Length = 108 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C G + + E + + K L N +G + + C C Sbjct: 7 HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + E ++EII + Sbjct: 65 PVLVVYPEAVWYTFVDREDIDEIIQS 90 >gi|284052910|ref|ZP_06383120.1| hypothetical protein AplaP_15683 [Arthrospira platensis str. Paraca] Length = 118 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152 V VC C+ G ++ ++ + +D + E C G C P V + Sbjct: 27 CVLVCQHQSCLRNGSQETLKAFED----------ADIPNVKVEASGCLGQCNIGPTVRVI 76 Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + Y + PE ++ I G+ + P+I Sbjct: 77 PDETWYYRVQPEDVQAIASQHLQGGKPVQEKLNPRIH 113 >gi|309389846|gb|ADO77726.1| hypothetical protein Hprae_1599 [Halanaerobium praevalens DSM 2228] Length = 82 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G EK+IE+ + +I + G+ CQG C + I Sbjct: 4 IIICVGSSCHLKGSEKVIEIFKEEIKKHNLDQVEISGSF------CQGNCTEGVNIEING 57 Query: 155 DTYEDLTPERLEEIIDA 171 E + E +EI Sbjct: 58 QKIEAVNEENAQEIFKK 74 >gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] Length = 606 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIG 153 + +C T C G K+ E K + + C G C N P+V M Sbjct: 5 ILICCGTGCRANGSMKVAEALSEAAEAKGGR--AQVIAEVKTTGCNGFCENGPIVKIMPD 62 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + P+ EEII+ Sbjct: 63 NLVYYKVKPKDAEEIIEK 80 >gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5] gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5] Length = 628 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 10/87 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIH------QKPLH--RNSDGTLSWEEVECQGA 143 ++ V +C T C+ G + + + + DG + ++ C G Sbjct: 24 SKCRVLICAGTGCLAGGSGDIYKRMCELVEENPDVEVHFGEEIAHGDGEIGIKKSGCHGF 83 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168 C P++ I Y + E +EI Sbjct: 84 CEMGPLMRIEPQGILYTKVQLEDCDEI 110 >gi|325000401|ref|ZP_08121513.1| hypothetical protein PseP1_16617 [Pseudonocardia sp. P1] Length = 217 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 H+ VC C++ G + G C G C P+V+ Sbjct: 142 PHRHLFVCRGPRCLVHGAGETHRALSAAAKGTTTQVTPCG--------CLGPCNLGPLVV 193 Query: 152 IGKDTYEDLTPERLEEII 169 G + ++P +E++ Sbjct: 194 DGATWHRAVSPLDADELV 211 >gi|293374978|ref|ZP_06621273.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|325843327|ref|ZP_08167910.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1] gi|292646388|gb|EFF64403.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|325489356|gb|EGC91729.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1] Length = 84 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM-IG 153 +++C + C L+G ++I++ ++ + L C G C A VM Sbjct: 3 TIKICVGSSCHLKGSYEVIQIFQSL--IEKHQLQE--VLELRAAFCLGHCTEAVSVMGPN 58 Query: 154 KDTYEDLTPERLEEIIDA 171 ++ ++P+ E++ +A Sbjct: 59 EEVLA-VSPDDAEKLFEA 75 >gi|296160366|ref|ZP_06843183.1| Sucraseferredoxin family protein [Burkholderia sp. Ch1-1] gi|295889347|gb|EFG69148.1| Sucraseferredoxin family protein [Burkholderia sp. Ch1-1] Length = 107 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 22/102 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C +++ E + + K L G Sbjct: 3 SFY----------KYHVFFCLNQREPGAERPSCANCNAQEMQEHAKKR--VKKLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 + + C C P +++ Y + ++EI+D+ Sbjct: 51 QVRINKAGCLDRCELGPTLVVYPEGVWYTYVDESDIDEIVDS 92 >gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 573 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIID 170 ++ ++++ +K L D + E C G C P+V++ Y + PE + EI++ Sbjct: 1 MKAFKDELVKKGL----DREVMLVETGCHGMCEMGPVVVVYPEGAFYCRVMPEDVPEIVE 56 Query: 171 A 171 Sbjct: 57 E 57 >gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] Length = 597 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 13/122 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 V VC T + G +++ K K + + ++ C+G C Sbjct: 7 DHVEVHVCMGTAGVASGAIEVMAALDEQFEKHGLKNAE-SKERNCEAKQTGCRGLCARD- 64 Query: 149 MVMIG-------KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201 V+I TYE +T E + I++ G + + D L Sbjct: 65 -VLIDVYMPGEKSITYEHVTAEMVPTIVEEHIIGGQVVEKWAAKADYFQFYDKQKRYVLH 123 Query: 202 DN 203 D Sbjct: 124 DC 125 >gi|326790681|ref|YP_004308502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] gi|326541445|gb|ADZ83304.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium lentocellum DSM 5427] Length = 84 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-K 154 +++C + C ++G +I + + + + V C G C A V I Sbjct: 3 LKICIGSACHIKGSYNVISAFQQL--IEEYQVFE--QVELKAVFCLGHCTEAVSVQIDQG 58 Query: 155 DTYE 158 D Y Sbjct: 59 DIYS 62 >gi|83746893|ref|ZP_00943940.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551] gi|207727768|ref|YP_002256162.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2] gi|207742172|ref|YP_002258564.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609] gi|300705315|ref|YP_003746918.1| ferredoxin [Ralstonia solanacearum CFBP2957] gi|83726478|gb|EAP73609.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551] gi|206591009|emb|CAQ56621.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2] gi|206593560|emb|CAQ60487.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609] gi|299072979|emb|CBJ44336.1| putative ferredoxin [Ralstonia solanacearum CFBP2957] Length = 108 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C G + + E + + K L N +G + + C C Sbjct: 7 HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + E ++EII + Sbjct: 65 PVLVVYPEAVWYTFVDREDIDEIIQS 90 >gi|326333064|ref|ZP_08199315.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1] gi|325949138|gb|EGD41227.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1] Length = 223 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 6/99 (6%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G V +C C +G E++ + D L CQ C AP+ Sbjct: 128 PGHVRQVLICRGPRCTAKGSEEVARAV--ILGAMEAGLGDDDLL-ITHTGCQFPCNQAPV 184 Query: 150 --VMIGKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQ 185 V Y ++ I+ D G+ P+ Sbjct: 185 LSVQPDDVWYGNVEAAAARVIVRDHLDGGRPVEAYRLPR 223 >gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 598 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C EK+I ++ L + + C G C P+V++ Sbjct: 5 RSHVLVCGGTGCTSSNSEKIISEFNVQLANNNLQ----NEVKIVKTGCFGLCAQGPIVVV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + E ++EI + Sbjct: 61 YPEGAMYTMVKVEDIKEITEE 81 >gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans SSM1] gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans SSM1] Length = 596 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 12/121 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPM 149 R V VC T + G +++ + + + + C+G C Sbjct: 7 DRIEVHVCMGTAGVASGGAEVMAAFEEEFKKHGLIGEV-KERNCKVKATGCRGLCARD-- 63 Query: 150 VMIG-------KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 V++ + TYE +TPE + I++ + + D L D Sbjct: 64 VLVDIHIPGQEEVTYEHVTPEIVPTIVEEHILKGEVVKKWAAKKDYYDFYKLQKRYVLAD 123 Query: 203 N 203 Sbjct: 124 C 124 >gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus mobilis] Length = 609 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAPMVMI 152 V VC C+ + + R+KI D + +E CQG C PM+ I Sbjct: 17 TVLVCCGPGCLANDSPAIAKALRSKI----DEAGLDVKVHPLIKETGCQGLCEKGPMIRI 72 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176 Y ++ +E I++ +G+ Sbjct: 73 VPDDIAYYKVSLNDVEAIVEKTLRSGE 99 >gi|55379593|ref|YP_137443.1| colbalt chelase thioredoxin [Haloarcula marismortui ATCC 43049] gi|55232318|gb|AAV47737.1| colbalt chelase thioredoxin [Haloarcula marismortui ATCC 43049] Length = 407 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 HV VC C G ++E R D ++ C G C PMV + Sbjct: 318 HVAVCTNQTCAQDGAPAVLERLRQAARDSDQC---DARIT--RSSCLGRCGEGPMVAVYP 372 Query: 153 GKDTYEDLTPERLEEIIDA 171 Y + E EI+ + Sbjct: 373 DGVWYGGVEDEDAAEIVSS 391 >gi|303239625|ref|ZP_07326150.1| ferredoxin [Acetivibrio cellulolyticus CD2] gi|302592796|gb|EFL62519.1| ferredoxin [Acetivibrio cellulolyticus CD2] Length = 122 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 10/94 (10%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 Q L V V T + G ++ +++++ + ++ C G Sbjct: 16 DQMSLRKSNDGMRVIVGMATCGIAAGARPVMSAFVEELNKRNIT-----DVTVTMTGCIG 70 Query: 143 ACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171 C P+V I K TY +TPE+ I+ Sbjct: 71 VCRLEPVVEIIDKDGNKVTYVKMTPEKAARIVAE 104 >gi|27376876|ref|NP_768405.1| ferredoxin [Bradyrhizobium japonicum USDA 110] gi|12620475|gb|AAG60751.1|AF322012_56 Fer2 [Bradyrhizobium japonicum] gi|27350018|dbj|BAC47030.1| ferredoxin [Bradyrhizobium japonicum USDA 110] Length = 115 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 23/114 (20%) Query: 85 FQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 F L P R HV C T C G + L + I + L D + Sbjct: 7 FHL-PQLYRHHVFACNTQRPPNHPHGSCGASGAQALWDRMGKAIEAQGL---DDIGFA-- 60 Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 C G C + P++++ Y TPE ++EI+ ++ G ++DR Sbjct: 61 TAGCLGFCNSGPLLVVYPDGVWYRATTPEDVDEIV-------ISHLKHGQRVDR 107 >gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909] gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1] gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909] gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1] Length = 606 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +CG T C +++ N + + D + C G C P+V++ Sbjct: 5 RSHVLICGGTGCTSSKSKEIKHELVNHL-VRLG---LDKEVQVVMTGCFGLCEAGPIVIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + I + Sbjct: 61 YPEGTFYSKVQVSDAVRIAEE 81 >gi|17545048|ref|NP_518450.1| ferredoxin 2FE-2S protein [Ralstonia solanacearum GMI1000] gi|17427338|emb|CAD13857.1| putative ferredoxin 2fe-2s protein [Ralstonia solanacearum GMI1000] gi|299068145|emb|CBJ39362.1| putative ferredoxin [Ralstonia solanacearum CMR15] Length = 108 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C G + + E + + K L N +G + + C C Sbjct: 7 HHVFFCLNEREDGARCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64 Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + E ++EII + Sbjct: 65 PVLVVYPEAVWYTFVDREDIDEIIQS 90 >gi|298490568|ref|YP_003720745.1| nucleic acid-binding OB-fold tRNA/helicase-type protein ['Nostoc azollae' 0708] gi|298232486|gb|ADI63622.1| nucleic acid binding, OB-fold, tRNA/helicase-type ['Nostoc azollae' 0708] Length = 188 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 16/111 (14%) Query: 83 TQFQLSPVG----------TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 T +++ PVG T A + VC + C+ RG + L+ + Sbjct: 80 TAYRVQPVGFCPIHNHLPETTAKIMVCQKSGCIKRGGKGLLSKLEKTL-CDRGLLE---K 135 Query: 133 LSWEEVECQGACVNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + E +CQ C +AP ++++GK Y + P+ + ++ G T + Sbjct: 136 VKIEHTDCQKRCSSAPNCVLILGKKQYRKIHPDAIASFLENHLKGFSKTGK 186 >gi|270158044|ref|ZP_06186701.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968] gi|289163688|ref|YP_003453826.1| ferredoxin 2fe-2s protein [Legionella longbeachae NSW150] gi|269990069|gb|EEZ96323.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968] gi|288856861|emb|CBJ10672.1| putative ferredoxin 2fe-2s protein [Legionella longbeachae NSW150] Length = 105 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ +C C G E+ + ++++ L + G + + C G C + P Sbjct: 7 HIFLCTNKKAAGKQCCANSGGEEFFDYIKSRL--LELEMHGPGKVRISKTGCLGRCSSGP 64 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 ++I Y + ++EII+ Sbjct: 65 CIVIYPEGVWYTYSSFADIDEIIEK 89 >gi|281356044|ref|ZP_06242537.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] gi|281317413|gb|EFB01434.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] Length = 86 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + +C + C RG E+ I V + + + + CQ C + P V+ Sbjct: 2 AKPKIVICLGSSCFARGNEENIRVVEAYLAENSYR--DEVEVELSGTLCQARCADGPNVI 59 Query: 152 IGKDTYEDLTPERLEEII 169 I TY + P + +++ Sbjct: 60 IDGVTYSKVDPGVMLDLL 77 >gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 575 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG T C +K+I++ + + + + C G C P++ I Sbjct: 35 ILVCGGTGCHANESDKIIKILEALLKSRGMAE----QVKVIRTGCFGFCEQGPIIKIEPD 90 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + + + I++ Sbjct: 91 NVFYVRVGLKDAKAIVEE 108 >gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] Length = 595 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + +V +CG T C +++ + + +SD + + C G C P+V + Sbjct: 4 KQYVLICGGTGCESNKSDQVYRNLLGLL--EKEGISSD--VQVVKTGCFGFCEQGPIVKV 59 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179 + Y + PE EEI+ + G+ T Sbjct: 60 LPEESFYVQVKPEDAEEIVKEHLIKGRPVT 89 >gi|221635789|ref|YP_002523665.1| NADH:ubiquinone oxidoreductase, nadh-binding [Thermomicrobium roseum DSM 5159] gi|221158137|gb|ACM07255.1| NADH:ubiquinone oxidoreductase, nadh-binding [Thermomicrobium roseum DSM 5159] Length = 172 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VC C +G +++ R ++ + L D + + C P +++ Sbjct: 5 RAHVLVCTANHCSQKGAQQVAARLRLELKRAGL----DAEIMVNTCDSIDLCDIGPNIVV 60 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 Y ++ L E+I++ GQ R Sbjct: 61 YPQGWIYRNVQVGDLPEVIESLRHGQHPVER 91 >gi|113866330|ref|YP_724819.1| ferredoxin [Ralstonia eutropha H16] gi|113525106|emb|CAJ91451.1| Ferredoxin [Ralstonia eutropha H16] Length = 106 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 15/89 (16%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144 HV C C + + E + ++ G + + C C Sbjct: 7 HHVFFCLNQREAGENCCANHNAQAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 62 Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + ++EIID+ Sbjct: 63 ELGPVLVVYPEAIWYTFVDEHDIDEIIDS 91 >gi|224368088|ref|YP_002602251.1| Thx [Desulfobacterium autotrophicum HRM2] gi|223690804|gb|ACN14087.1| Thx [Desulfobacterium autotrophicum HRM2] Length = 108 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 16/95 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC P C + + N+I +G + C Sbjct: 4 PKHHILVCASFRPSGEPKGKCHRKNSMDFLPYIENEI-IDRG---LEGVI-VSSTCCLKL 58 Query: 144 CVNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTG 175 C P+++I Y ++T E ++EI+DA G Sbjct: 59 CDEGPILVIYPENIWYGNVTSEDAIDEILDALEDG 93 >gi|312880917|ref|ZP_07740717.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] gi|310784208|gb|EFQ24606.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] Length = 99 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169 G + + C G C AP++ Y +T +L++++ Sbjct: 56 GKVQVAKTSCLGDCAGAPVLEFRGQVYSRMTEGKLKDLL 94 >gi|319955893|ref|YP_004167156.1| 2fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511] gi|319418297|gb|ADV45407.1| 2Fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511] Length = 126 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 GT+ + C G C P++++ G Y +L E+++ II+ G Sbjct: 55 GTVQPVQTGCLGRCQQGPVMLVEPGHTMYVNLNKEKIDRIIEEHILG 101 >gi|195953767|ref|YP_002122057.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1] gi|195933379|gb|ACG58079.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1] Length = 109 Score = 45.5 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%) Query: 95 HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 HV VC C +G + + + Q P T++ C G C Sbjct: 4 HVFVCVNQRPPGHPLGSCAEKGSRDVYTAFADALQQDPQLM---MTVAVTPTGCLGPCAM 60 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P V++ Y + E + EII++ Sbjct: 61 GPTVVVYPEGIWYGGVKKEDVNEIIES 87 >gi|119492672|ref|ZP_01623851.1| hypothetical protein L8106_00175 [Lyngbya sp. PCC 8106] gi|119453010|gb|EAW34181.1| hypothetical protein L8106_00175 [Lyngbya sp. PCC 8106] Length = 111 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 18/99 (18%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQGACVNAPMVM 151 V+VC C+ +G +K+++ + D +S E C G C P V Sbjct: 20 CVRVCQNQTCLRQGSQKVLQAFQ------------DADISDIIIEASGCMGQCSVGPTVK 67 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + + Y + + II+ GQ + P+I Sbjct: 68 VTPDETWYYRVQQTDVPIIIEQHLKGGQPVEEKLNPRIH 106 >gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 667 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 80 TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEV 138 TF ++ G V VC CM RG E++++ + G++ E Sbjct: 577 TF-EIYKPDQKGN-IKVSVCFGNSCMQRGSEEILKHI-----ISFVENGKYKGSVGIEVS 629 Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171 C C P+V + T E T + EE I Sbjct: 630 MCLEKCFRGPVVKVANQTLEHCTTKAAEEAIQE 662 >gi|168017648|ref|XP_001761359.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687365|gb|EDQ73748.1| predicted protein [Physcomitrella patens subsp. patens] Length = 629 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC C G ++++ + I + LS +C G C +AP V + Sbjct: 533 KIEVCTVGKCRRGGSQEILAAFQESIPESSN-------LSATSCKCMGKCKSAPNVRVKN 585 Query: 155 -----DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 + ++ E ++ +++ G + P P Sbjct: 586 SDGISQLHSHVSAEDVDTLLE-LHFGMQPSGNPMP 619 >gi|187251163|ref|YP_001875645.1| hypothetical protein Emin_0753 [Elusimicrobium minutum Pei191] gi|186971323|gb|ACC98308.1| hypothetical protein Emin_0753 [Elusimicrobium minutum Pei191] Length = 79 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V VC + C L+G +++E + N + C G C V + Sbjct: 2 KVTVCIGSSCHLKGSRQVVEELQYL----VAENNLKEKVELSGTFCMGNCQKGVCVTVNG 57 Query: 155 DTYEDLTPER 164 + + ++P+ Sbjct: 58 ENFS-VSPQE 66 >gi|186686526|ref|YP_001869722.1| hypothetical protein Npun_F6517 [Nostoc punctiforme PCC 73102] gi|186468978|gb|ACC84779.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102] Length = 110 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V+VC C +G K+ + D ++ C G C N PMV++ Sbjct: 21 CVRVCQNRTCKKQGAAKVFAAF-TALPI------PD--VTVTASSCLGQCGNGPMVLVLP 71 Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175 Y + P + +I+ G Sbjct: 72 DMVWYSGVKPHEVSLLIENHLLG 94 >gi|328951489|ref|YP_004368824.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884] gi|328451813|gb|AEB12714.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884] Length = 105 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148 TRAH+ +C C RG + + + + GTL E C GAC P Sbjct: 8 TRAHLLLCTGPRCRARGADTVFRYLWDALEREGLAYYKTG--GTLRLTESSCLGACCCGP 65 Query: 149 MVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190 +++ Y +T E+ A G+ P+ +R Sbjct: 66 ILLAYPAGAWYHGVTVPAALEVARALHEGRDL-----PETNRFD 104 >gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfobulbus propionicus DSM 2032] gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfobulbus propionicus DSM 2032] Length = 683 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V+VC T C LR + +I+ + L D + + C C P V +G Sbjct: 596 TVRVCAGTGCFLRNSQAIIQGLMKHVEANDL----DDKVQVQASFCFEMCGEGPNVAVGD 651 Query: 155 DTYEDLTPE----RLEEIIDAFSTGQ 176 T + + + ++GQ Sbjct: 652 TIINHATLDVVINAVHAELAQMASGQ 677 >gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta thermophila DSM 6578] Length = 595 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + +V +CG T C +++ + + +SD + + C G C P+V + Sbjct: 4 KQYVLICGGTGCESNKSDQVYRNLLGLL--EKEGISSD--IQVVKTGCFGFCEQGPIVKV 59 Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179 + Y + PE EEI+ + G+ T Sbjct: 60 LPEESFYVQVKPEDAEEIVKEHLIKGRPVT 89 >gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] Length = 612 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 8/72 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMI 152 + C T C G LI R + ++ G + E C G C P+ + Sbjct: 29 RIFCCSGTGCHATGSIPLIAALREEAARQG------GCVQVIETGCNGFCALGPVVIMQP 82 Query: 153 GKDTYEDLTPER 164 G Y + E Sbjct: 83 GGILYCKVRVED 94 >gi|217077619|ref|YP_002335337.1| NADP-reducing hydrogenase, subunit b [Thermosipho africanus TCF52B] gi|217037474|gb|ACJ75996.1| NADP-reducing hydrogenase, subunit b [Thermosipho africanus TCF52B] Length = 124 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 ++ G R + V T + G + ++ + N D +S + C G C Sbjct: 22 KMREEGKRGRIIVAMGTCGIAAGAKDTLKAIVETLS----ELNID-DISVVQSGCMGLCE 76 Query: 146 NAPMVMI--GKD---TYEDLTPERLEEIIDA 171 P + + + Y +TPE + II + Sbjct: 77 VEPTIKVELDGEIPVIYGHVTPENAKRIIKS 107 >gi|296272233|ref|YP_003654864.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299] gi|296096408|gb|ADG92358.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299] Length = 120 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%) Query: 80 TFYTQFQ---LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 TFY F+ +P G C+ L K+ +K L G + Sbjct: 10 TFY-MFKCEQSAPPGMPKP-------SCVTEDNRDLYNYLAQKMMEKGLM----GPVQAI 57 Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C G C P++++ G Y L+ E++++I++ G Sbjct: 58 RTSCLGRCQMGPVLLVEPGHTMYCKLSKEKIDKIVEEHIIG 98 >gi|206603963|gb|EDZ40443.1| Probable ferredoxin [Leptospirillum sp. Group II '5-way CG'] Length = 112 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 14/89 (15%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C LR E+++ + R ++ N + C AC Sbjct: 5 RYHVFACTNKRDPEHPRGSCQLRNAEEILSLFREELK----QANIPQPFRINKSGCLDAC 60 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+ + Y T E + +++ Sbjct: 61 EEGPVFAVYPDGVYYRLKTREDVRQVVRQ 89 >gi|307823873|ref|ZP_07654101.1| Sucraseferredoxin family protein [Methylobacter tundripaludum SV96] gi|307735167|gb|EFO06016.1| Sucraseferredoxin family protein [Methylobacter tundripaludum SV96] Length = 107 Score = 45.1 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 89 PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P + V VC C GC +++ N+I + L ++ C Sbjct: 2 PRPEKH-VFVCTQNRPQGHPRGSCASSGCAEIMNEFMNEIQARNLFE----KIALTNTGC 56 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 G C+ P V++ Y L + ++ II+ G Sbjct: 57 MGPCMMGPSVLVYPEGIMYGKLKKDDVKTIIEQHLLG 93 >gi|169828909|ref|YP_001699067.1| putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41] gi|168993397|gb|ACA40937.1| Putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41] Length = 173 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + H+ +C + CM + E++ + R++I + L D + C G C +A +V Sbjct: 58 GMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCNGRCKDACVV 113 >gi|76801206|ref|YP_326214.1| cobalamin cluster protein CbiX 1 ( ferredoxin-like iron-sulfur protein) [Natronomonas pharaonis DSM 2160] gi|76557071|emb|CAI48645.1| conserved cobalamin cluster protein CbiX 1 (probable ferredoxin-like iron-sulfur protein) [Natronomonas pharaonis DSM 2160] Length = 396 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 14/87 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 HV VC C G ++E R + D ++ C C + P V Sbjct: 309 HVTVCTNRTCADAGAATVLERLRQAVRDRGI-------DARIT--RSSCLDRCGDGPNVA 359 Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQ 176 + Y + PE ++ I + + Sbjct: 360 VYPDNVWYGGVAPEDVDRIASSLERDR 386 >gi|120586949|ref|YP_961294.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564363|gb|ABM30106.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris DP4] Length = 100 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%) Query: 94 AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ VC + C+ +G L+ +I + L C C Sbjct: 6 HHILVCMSFRGLEPKGTCIRKGAPDLVAHLDAEIAARGL-----NAF-VSTTGCLQFCDK 59 Query: 147 APMVMI--GKDTYEDLTPER-LEEIIDAFSTGQGDT 179 P++++ Y + E ++ I+DA G+ T Sbjct: 60 GPVLVVYPQGHWYGGVDDEDAIDAILDALEAGEPCT 95 >gi|33863432|ref|NP_894992.1| hypothetical protein PMT1162 [Prochlorococcus marinus str. MIT 9313] gi|33640881|emb|CAE21337.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 115 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 12/108 (11%) Query: 94 AHVQVCGTT---PCMLRG-CEKLIEVCRNKIHQKPLH--RNSDGTLSWEEVECQGACVNA 147 H+ +C T C + +I L +G + +V+C C + Sbjct: 7 HHLLLCATANKAACCSADVGNASWANLKKQIKHHDLENIDRPEGVVLRSKVDCLRICNDG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQIDRI 189 P+++I Y +TPER+E I+ G + IR PQ R Sbjct: 67 PILLIWPDGIWYGGVTPERIESIVKEHVLGGQPIEAWIIRRTPQQQRH 114 >gi|257095119|ref|YP_003168760.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047643|gb|ACV36831.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 102 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R HV C T C G +++I + L G + + C C + Sbjct: 5 RHHVFFCCNQRGEGETCCNNAGATAAQMYAKDRIGELRLKGA--GKVRINKAGCMDRCDS 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P++++ Y + E +EEII Sbjct: 63 GPVLVVYPDAVWYSYVDNEDIEEIIQE 89 >gi|326201390|ref|ZP_08191262.1| ferredoxin [Clostridium papyrosolvens DSM 2782] gi|325988958|gb|EGD49782.1| ferredoxin [Clostridium papyrosolvens DSM 2782] Length = 123 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 14/90 (15%) Query: 86 QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + + G + V + C + G ++ +I+++ L ++ C G C Sbjct: 21 RSNEKGIKVVVAMAT---CGIAAGARPVMNKFIEEINKRNLE-----NVTVSITGCIGVC 72 Query: 145 VNAPMVMI---GKD--TYEDLTPERLEEII 169 P+V I TY ++TPE+ E ++ Sbjct: 73 KMEPVVEILDKDDKKVTYVNMTPEKAERVV 102 >gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] Length = 602 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD--TY 157 C + G + E + ++ ++ L + + V C G C P++ I + TY Sbjct: 13 SCGIAAGARETYEAVKEELEKRNLD------IKLKIVGCVGMCYREPLLDIITDNEIITY 66 Query: 158 EDLTPERLEEIIDA 171 +TP+R+ II+ Sbjct: 67 GHVTPDRVPRIIEE 80 >gi|126652145|ref|ZP_01724327.1| cobalamin biosynthesis protein [Bacillus sp. B14905] gi|126591053|gb|EAZ85164.1| cobalamin biosynthesis protein [Bacillus sp. B14905] Length = 123 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + H+ +C + CM + E++ + R++I + L D + C G C +A +V Sbjct: 8 GMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCNGRCKDACVV 63 >gi|257059647|ref|YP_003137535.1| hypothetical protein Cyan8802_1801 [Cyanothece sp. PCC 8802] gi|256589813|gb|ACV00700.1| hypothetical protein Cyan8802_1801 [Cyanothece sp. PCC 8802] Length = 198 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 + + +C + C G +L E + + + L + ++ ++ CQ C AP + Sbjct: 111 KKGKILLCNKSDCAKNGGRQLYEELQKTLCRLGLEDS----VTIQKTSCQKRCSKAPNMI 166 Query: 151 -MIGKDTYEDLTPERLEEII 169 M GK P+ ++ ++ Sbjct: 167 LMPGKAKCSKPNPKTIDNLL 186 >gi|198284910|ref|YP_002221231.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667590|ref|YP_002427591.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249431|gb|ACH85024.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519803|gb|ACK80389.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 105 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 18/94 (19%) Query: 95 HVQVCGTT------PCMLRG-CEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGAC 144 H+ VC C G E++ + + + C G C Sbjct: 9 HLFVCLNQRENGERACNNSGIAEEVFHAAKQHAKALGIH-GE----KQVRVNRCGCLGRC 63 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175 P+ ++ Y + + + EI+++ G Sbjct: 64 DEGPIAVVYPDAVWYTYVDADDIREIVESHLRDG 97 >gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 617 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGAC 144 R + V T M G K++ K+ + + C G C Sbjct: 16 KKKLDRPRIIVGLGTCGMAAGGTKVMAAIETEVEKLGLD---------VDLDFTSCIGMC 66 Query: 145 VNAPMVMIG-----KDTYEDLTPERLEEIIDA 171 P+V +G Y + PE + ++I++ Sbjct: 67 YAEPVVEMGLPGAASVVYGGVYPEDVAQLIES 98 >gi|188584740|ref|YP_001916285.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349427|gb|ACB83697.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 124 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 15/90 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 V V T + G +++ +++++ L ++ + C G C N V++ Sbjct: 30 MVIVGMGTCGIAAGAREVMNALLEELNKRSLK-----EITVTQTGCIGMCENE--VLVDV 82 Query: 154 ------KDTYEDLTPERLEEII-DAFSTGQ 176 + TY ++TPE + I+ D G+ Sbjct: 83 KKQGEERITYGNVTPEDIPRIVNDHLINGK 112 >gi|162448515|ref|YP_001610882.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56'] gi|161159097|emb|CAN90402.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56'] Length = 395 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R HV VCG C+ RG L+E R + Q + + C G C P V + Sbjct: 302 RKHVLVCGNADCVDRGSLALLESVRRLVKQAGQQQ----QIRVTRTSCMGRCGEGPTVAV 357 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y + E +++++ G Sbjct: 358 YPDGVWYRGVRDEDAKDLVEEHLLG 382 >gi|126658203|ref|ZP_01729354.1| hypothetical protein CY0110_11732 [Cyanothece sp. CCY0110] gi|126620574|gb|EAZ91292.1| hypothetical protein CY0110_11732 [Cyanothece sp. CCY0110] Length = 88 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 11/73 (15%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152 + VC C G ++L+ + D + C G C N P +++ Sbjct: 16 TILVCQGRCCRKDGSKQLLMAFES-------QTPPD--VQIIPCGCLGQCGNGPNIVILP 66 Query: 153 GKDTYEDLTPERL 165 K Y+ ++ + + Sbjct: 67 EKKLYQRVSAKDV 79 >gi|311747469|ref|ZP_07721254.1| NAD-reducing hydrogenase, alpha subunit [Algoriphagus sp. PR1] gi|126574827|gb|EAZ79198.1| NAD-reducing hydrogenase, alpha subunit [Algoriphagus sp. PR1] Length = 80 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC + C G + L + + + K G +C C +AP+++ Sbjct: 4 KRKLIFVCSGSDCKKAGIKSLKKELKQAM--KEGEL--KGQCKMITTKCMDFCKSAPVMI 59 Query: 152 IGKDTYEDLTPERLEEIIDA 171 +G + T ++ E I Sbjct: 60 VGNHICKKATKTKVLEQIKK 79 >gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 637 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC + C+ G KL+ +++I ++ L + + E C G C P+++I Sbjct: 25 RPCIAVCTGSGCLALGAAKLVAALKSEIKEQGLEQ----RIEVRETGCPGFCERGPLIVI 80 Query: 153 --GKDTYEDLTPERLEEIIDA 171 + Y + P +E+I + Sbjct: 81 YPEETCYLKVQPTDAKEVIAS 101 >gi|147920060|ref|YP_686183.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I] gi|110621579|emb|CAJ36857.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I] Length = 102 Score = 44.7 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 14/91 (15%) Query: 95 HVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ +C ++ C + ++++ +I + L G + C G C Sbjct: 7 HIFICTSSRHTGQQKGFCHSKAGVEVLQKFMEEIEMRELG----GEVFVNNTGCFGICEK 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+V++ Y+ +T + + EII++ G Sbjct: 63 GPIVVVYPDNVWYKSVTSDDVTEIIESHIEG 93 >gi|251772858|gb|EES53417.1| probable ferredoxin [Leptospirillum ferrodiazotrophum] Length = 108 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C RG ++ + ++ + + + C G C +++ Y + Sbjct: 23 SCAQRGAMEVFQAMAMQL--EQGGLSR--RFAVTNTGCLGPCDTGANMIVYPDGIMYGGV 78 Query: 161 TPERLEEIIDAFSTGQGDTIR 181 E + EII G R Sbjct: 79 KAEDVPEIISEHLVGGKPVER 99 >gi|194334440|ref|YP_002016300.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271] gi|194312258|gb|ACF46653.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271] Length = 103 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 22/98 (22%) Query: 94 AHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQG 142 H+ VC TP C + LI +++ SD ++ C Sbjct: 6 HHILVCASFRAQGTPQGICHKKESLSLIPYLESEL--------SDRDMTDVVVSATGCLN 57 Query: 143 ACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P+V++ E + E+++EI+DA G+ Sbjct: 58 VCEKGPIVVVYPENHWYGEIDSEEKIDEILDALEEGEA 95 >gi|298244919|ref|ZP_06968725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter racemifer DSM 44963] gi|297552400|gb|EFH86265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter racemifer DSM 44963] Length = 246 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 2 SVRRLAEEEFQPSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIP-LLMRAQEQEGWVSRA 59 + +A P + V+ +I ++P +A +P LL + G++S Sbjct: 126 FNKPVAPCVTTPVKDELEPQIDLSQVDALIEQWPYD---AASLPGLLDAIMDMYGYLSLQ 182 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPV 90 A + V + V IAT +F+ +P Sbjct: 183 AAKRVVQARGVDLSDVFGIATMSPKFKPAPA 213 >gi|251770990|gb|EES51574.1| probable ferredoxin [Leptospirillum ferrodiazotrophum] Length = 106 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 7/99 (7%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 L+ R H+ C C+ +G E++ + +N + P +S L + C C + Sbjct: 2 LTKAKIRHHILFCTGNKCLGKGGEEMKILAQNIVDATP-ELSS---LLVSKTGCVNMCES 57 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 PMV++ + D+T R + ++++ + + PG Sbjct: 58 GPMVLLYPEGYWFSDMTEGRTKLLLESIRENR-EAPLPG 95 >gi|300861283|ref|ZP_07107370.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis TUSoD Ef11] gi|295112907|emb|CBL31544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit. [Enterococcus sp. 7L76] gi|300850322|gb|EFK78072.1| putative NAD-dependent formate dehydrogenase, gamma subunit [Enterococcus faecalis TUSoD Ef11] gi|315145701|gb|EFT89717.1| hypothetical protein HMPREF9495_00660 [Enterococcus faecalis TX2141] gi|315160212|gb|EFU04229.1| hypothetical protein HMPREF9513_03189 [Enterococcus faecalis TX0645] Length = 47 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173 + C GAC P++ I + LT E++ ++I Sbjct: 5 IPCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQ 40 >gi|283782440|ref|YP_003373195.1| ferredoxin-like protein [Pirellula staleyi DSM 6068] gi|283440893|gb|ADB19335.1| ferredoxin-like protein [Pirellula staleyi DSM 6068] Length = 112 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C C + G E+L + ++ ++ L G + C C Sbjct: 6 HHIFICTNQREKGHKRGSCDVDGEERLKSAFKKELDRRGLK----GEVRANSAGCLDQCE 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+++I Y ++ + + +II+ Sbjct: 62 LGPVIVIYPQAIWYGNVQVKDVPKIIEE 89 >gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way CG'] Length = 1048 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 11/85 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ ++ + T + G ++ E + ++ L+ C G C N P++ Sbjct: 2 TKTNIYIGMATCGLASGARRIHEAVEKESRERGYE------LAIHPTGCIGMCHNEPILE 55 Query: 152 IG-----KDTYEDLTPERLEEIIDA 171 + + TY +TPE + I+D+ Sbjct: 56 VEVPGQPRITYAQVTPESVPAILDS 80 >gi|303246370|ref|ZP_07332649.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ] gi|302492080|gb|EFL51955.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ] Length = 103 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 23/98 (23%) Query: 94 AHVQVC-----GTTP---CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142 + VC C +G L+ + C Sbjct: 8 YLINVCASFRVKGEAKGICHKKGSHNLMGYFEEGVLDRGIDA---------RIVSTGCMK 58 Query: 143 ACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P+V++ + ++++EI+DA G+ Sbjct: 59 QCEEGPIVVVMPENWWYRGIDSEDKVDEILDALENGEA 96 >gi|218246604|ref|YP_002371975.1| hypothetical protein PCC8801_1773 [Cyanothece sp. PCC 8801] gi|218167082|gb|ACK65819.1| conserved hypothetical protein [Cyanothece sp. PCC 8801] Length = 198 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 + + +C + C G +L E + + + L + ++ ++ CQ C AP + Sbjct: 111 KKGKILLCNKSDCAKNGGRQLYEELQKTLCRLGLEES----VTIQKTSCQKRCSKAPNMI 166 Query: 151 -MIGKDTYEDLTPERLEEII 169 M GK P+ ++ ++ Sbjct: 167 LMPGKAKCSKPNPKTIDNLL 186 >gi|226356214|ref|YP_002785954.1| hypothetical protein Deide_12790 [Deinococcus deserti VCD115] gi|226318204|gb|ACO46200.1| Hypothetical protein Deide_12790 [Deinococcus deserti VCD115] Length = 85 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN---APMVMIGKDTYEDLTPERLE 166 E L++ + P +DG + +C G V AP V + Y ++TPERL Sbjct: 19 EDLLDAVWTALRISPGMVTADGNVELALCQC-GQGVLPEDAPFVRVDGREYRNVTPERLS 77 Query: 167 EII 169 ++ Sbjct: 78 TLM 80 >gi|307297599|ref|ZP_07577405.1| NADP-reducing hydrogenase, subunit B [Thermotogales bacterium mesG1.Ag.4.2] gi|306916859|gb|EFN47241.1| NADP-reducing hydrogenase, subunit B [Thermotogales bacterium mesG1.Ag.4.2] Length = 125 Score = 44.7 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 10/90 (11%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G R V V T + G + + + + +K + +S + C G C P + Sbjct: 27 GKRGKVIVAMGTCGIAAGAKDTLRAIVDSLEEKGID-----DVSVVQSGCFGLCDAEPTI 81 Query: 151 MI-----GKDTYEDLTPERLEEIIDAFSTG 175 + Y +TP + + +++ G Sbjct: 82 EVHLEGSDPIIYGHVTPAQAKRVVEQHIVG 111 >gi|170759372|ref|YP_001787151.1| hypothetical protein CLK_1211 [Clostridium botulinum A3 str. Loch Maree] gi|169406361|gb|ACA54772.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 80 Score = 44.3 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G K+I + +N I + L + + C G C V + Sbjct: 3 IINICVGSACHLKGSYKVITLLQNFIEKNNLKD----KVEIKGSFCLGHCTEGVSVKVED 58 Query: 155 DTYEDLTPERLEE 167 Y + E +EE Sbjct: 59 KIYS-VDEENVEE 70 >gi|124514844|gb|EAY56355.1| probable ferredoxin [Leptospirillum rubarum] Length = 112 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 14/89 (15%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 R HV C C LR E+++ + R ++ N + C AC Sbjct: 5 RYHVFACTNKRDPEHPRGSCQLRNAEEVLSLFREELK----QANIPQPFRINKSGCLDAC 60 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+ + Y T E + +++ Sbjct: 61 EEGPVFAVYPDGVYYRLKTREDVRQVVRQ 89 >gi|303248864|ref|ZP_07335113.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302489733|gb|EFL49666.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 80 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C + C RG +K + + + + ++ C+ C P + I Sbjct: 2 KHEIVICMGSSCFARGNKKHLLMIEQYLA--DHGLSE--SVVLTGSRCEDQCTTGPNIRI 57 Query: 153 GKDTYEDLTPERLEEII 169 Y ++ ERL E++ Sbjct: 58 DGQLYGEINGERLMELL 74 >gi|224373698|ref|YP_002608070.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH] gi|223589008|gb|ACM92744.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH] Length = 111 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 16/106 (15%) Query: 87 LSPVGTRAHVQVCG--------TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW-EE 137 + + + +C C+ G E L + + K + D ++W Sbjct: 1 MQMPKPKNVIYMCQVKRPPSFPKPSCVREGKEDLFQFTQQ----KMMEMGIDPMVNWIVP 56 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C C P++M+ G+ Y DL E++E+I+ G G+ ++ Sbjct: 57 TGCLNRCNFGPVMMVEPGQYMYVDLDKEKIEKILKEHIIG-GNPVK 101 >gi|145590144|ref|YP_001156741.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048550|gb|ABP35177.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 102 Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 94 AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 H+ C C R L E +N+ K L + G + + C C + Sbjct: 5 HHLFFCLNQRSNGEDCCDRHNAFALFEYAKNR--VKELGLSGPGKIRVNKAGCLDRCADG 62 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P++++ Y + + +EEII + Sbjct: 63 PVMVVYPQGVWYTLVDQDDVEEIIQS 88 >gi|288939936|ref|YP_003442176.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180] gi|288895308|gb|ADC61144.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180] Length = 109 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 11/103 (10%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 H+ C C + + + + K + + C G CV+ Sbjct: 6 HHIFFCTNRREDGRQCCAQSNASNMRDYLKRR--AKDEGLSGPSGVRVNTAGCLGRCVDG 63 Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQID 187 P +++ Y + LEEI+ + G+ P Sbjct: 64 PTIVVYPDAVWYTYADEQDLEEILSEHLKGGRVVERLRLPDSG 106 >gi|121603112|ref|YP_980441.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2] gi|120592081|gb|ABM35520.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2] Length = 123 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 95 HVQVC----GTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H+ C PC +G ++ + C++ K G + + C C P+ Sbjct: 23 HIFFCLNQRTGEPCCADQGAQQAFDRCKSL--VKAAGLAGPGKVRVNKAGCLDRCAGGPV 80 Query: 150 VMIGKDT--YEDLTPERLEEIIDA 171 ++ + Y + ++EI+++ Sbjct: 81 AVVYPEAVWYSYVDASDIDEIVES 104 >gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 624 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 17/130 (13%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVC-----RNKIHQKPL--HRNSDGTLSWEEVECQGAC 144 + + VC T C+ G ++ E + ++ D ++ ++ C G C Sbjct: 22 EKIKILVCSGTGCIASGSLEIYEEMLRLMKKEGLNCSVNLEEEPHDSSIGMKKSGCHGFC 81 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLL 201 P++ I Y + E +EII+ +TI+ G I+R+ G G + Sbjct: 82 EMGPLLRIEPWGYLYIKVKVEDCKEIIE-------ETIKKGQCIERLIYKKDGKGYKTQA 134 Query: 202 DNNSKKRGKK 211 + K+ + Sbjct: 135 EIPFYKKQTR 144 >gi|313203907|ref|YP_004042564.1| 2fe-2S ferredoxin [Paludibacter propionicigenes WB4] gi|312443223|gb|ADQ79579.1| 2Fe-2S ferredoxin [Paludibacter propionicigenes WB4] Length = 102 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 19/95 (20%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144 H+ VC + C +G L++ + G ++ C C Sbjct: 6 YHILVCNSFRIAGDAQGACNKKGASDLLQYISE-------EASDRGLDVAVSTTACLNVC 58 Query: 145 VNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQ 176 P+++I Y + E ++EI DA + Sbjct: 59 SQGPVMVIHPNNFWYGGVESEEIIDEIFDALEEDE 93 >gi|302816314|ref|XP_002989836.1| hypothetical protein SELMODRAFT_450953 [Selaginella moellendorffii] gi|300142402|gb|EFJ09103.1| hypothetical protein SELMODRAFT_450953 [Selaginella moellendorffii] Length = 236 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 R V+VC T C G + ++ +N + +S E C G C + P + Sbjct: 25 KRREVRVCTHTTCRKSGSLQTLQALQNL---------APAAVSVESCGCLGRCGSGPNLV 75 Query: 150 VMIGKDTYEDL-TPERLEEIID 170 ++ + TP +D Sbjct: 76 LLPDQRLVSYCNTPAHAARFLD 97 >gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 594 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C+ +++ + + K + C G C P+V Sbjct: 6 KILICGGTGCLSSKSDEIKKNLEKCIAEYDIKDIE--------VVLTGCFGFCEKGPIVK 57 Query: 152 I--GKDTYEDLTPERLEEIID 170 I Y ++ PE EEII Sbjct: 58 IIPENTFYIEVKPEDAEEIIK 78 >gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] Length = 626 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG C G + LI+ I ++ + + V C G C P V++ Sbjct: 39 IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + ++ I+D Sbjct: 94 GIFYTRVKLSDVKSIVDK 111 >gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 618 Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 H+ VC T C + + + +D + V C G C P+V++ Sbjct: 25 VHILVCAGTGCQSNKSLNTVAALQQA--VEDHGV-AD-RVKVVPVGCFGFCRMGPVVVVY 80 Query: 153 -GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQ 185 G+ Y ++ P+ II G + P P+ Sbjct: 81 PGQTFYCEVQPQHAPVIIQQHVLGGQPVEALLYAPNPR 118 >gi|254785688|ref|YP_003073117.1| ferredoxin 2Fe-2S [Teredinibacter turnerae T7901] gi|237684290|gb|ACR11554.1| ferredoxin, 2Fe-2S [Teredinibacter turnerae T7901] Length = 106 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C C RG E + ++ Q+ L ++ + C G C Sbjct: 6 HHIFICMQKRPPGHPRGSCGERGSEAVFNAFSQQLIQRNLQ-----NVALTQTGCLGPCQ 60 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 V++ Y + P+ + +II+ G Sbjct: 61 AGANVLVYPSGVMYGWVEPDDVPKIIEQHILG 92 >gi|193214873|ref|YP_001996072.1| ferredoxin-like protein [Chloroherpeton thalassium ATCC 35110] gi|193088350|gb|ACF13625.1| ferredoxin-like protein [Chloroherpeton thalassium ATCC 35110] Length = 122 Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 19/90 (21%) Query: 92 TRAHVQVC-------GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE--CQ 141 + V VC C +R G E ++ R +I ++ E VE C Sbjct: 8 EKKRVYVCHKLRPETDARSCCIRRGSESVLLAFREEIGKQHCE-------QIEAVESKCL 60 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEII 169 GAC +V++ Y +T + EI+ Sbjct: 61 GACTEGCVVLVHPDNIWYGKVTEADVAEIV 90 >gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] Length = 628 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 V +CG T C + E + + + + C G C P+V+I Sbjct: 38 VMICGGTGCTSSDSMFIAEAFEQAVASQGIQD----KIEIVRTGCFGLCELGPVVIIYPE 93 Query: 154 KDTYEDLTPERLEEIIDA 171 + Y + + + EI+D Sbjct: 94 EVFYNRVKVKDVAEIVDK 111 >gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] Length = 626 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG C G + LI+ I ++ + + V C G C P V++ Sbjct: 39 IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + ++ I+D Sbjct: 94 GIFYTRVKLSDVKNIVDK 111 >gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4] gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4] Length = 626 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153 + VCG C G + LI+ I ++ + + V C G C P V++ Sbjct: 39 IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93 Query: 154 KDTYEDLTPERLEEIIDA 171 Y + ++ I+D Sbjct: 94 GIFYTRVKLSDVKNIVDK 111 >gi|302387720|ref|YP_003823542.1| hypothetical protein Closa_3392 [Clostridium saccharolyticum WM1] gi|302198348|gb|ADL05919.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 125 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + V T + G ++ N + H S + C G C P+V I Sbjct: 27 RTRILVGMATCGIASGARPVLNTLSNL--VQENHMTD--RFSVTQTGCIGLCQYEPIVEI 82 Query: 153 -----GKDTYEDLTPERLEEI 168 K TY +TPE+ EE+ Sbjct: 83 LEPGKDKITYIKMTPEKAEEV 103 >gi|188591034|ref|YP_001795634.1| hypothetical protein RALTA_A0242 [Cupriavidus taiwanensis LMG 19424] gi|170937928|emb|CAP62912.1| conserved hypothetical protein; putative FERREDOXIN 2FE-2S [Cupriavidus taiwanensis LMG 19424] Length = 106 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 15/89 (16%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144 HV C C + + E + ++ G + + C C Sbjct: 7 HHVFFCLNQREAGENCCANYNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 62 Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171 P++++ + Y + ++EIID+ Sbjct: 63 ELGPVLVVYPEAIWYTYVDEHDIDEIIDS 91 >gi|332529903|ref|ZP_08405854.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624] gi|332040600|gb|EGI76975.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624] Length = 113 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 12/106 (11%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R H+ C C E C+ + + G + + C C Sbjct: 10 RQHIFFCLNQRANGEASCGDHQAEAAFAHCKKQ--VHEAGLSGKGQVRVNKAGCLDRCAG 67 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188 P+ ++ + Y + + ++EI+++ G+ + + P++ R Sbjct: 68 GPVAVVYPEETWYTYVDLKDIDEIVESHLKQGKVVERLLLSPEVGR 113 >gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 639 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 11/102 (10%) Query: 87 LSPVGTRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 L + + +++ C + G L ++ KI + L + + C G C Sbjct: 17 LKKLKPKNKIRISVGLATCGISVGGALLYDLLEKKIKEFGLE----NKVELSKTGCIGFC 72 Query: 145 VNAPMVMI---GKDTY--EDLTPERLEEIIDAFSTGQGDTIR 181 P+V I GK +TPE ++EI+ + + + Sbjct: 73 KEEPIVNIKIPGKAIVVLHRVTPEDVDEILKTIADDEYKFPK 114 >gi|296533445|ref|ZP_06896028.1| ferredoxin [Roseomonas cervicalis ATCC 49957] gi|296266225|gb|EFH12267.1| ferredoxin [Roseomonas cervicalis ATCC 49957] Length = 117 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 20/91 (21%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQG 142 P G R C RG E L + + ++ K + + C Sbjct: 20 NRRPDGHRRG-------SCAARGSEALKDYMKARAKELGLKG--------IRVNQAGCLD 64 Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C P+++I Y T E ++EI+ A Sbjct: 65 RCEFGPVIVIYPEGIWYRAETREDVDEILQA 95 >gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. SR1/5] Length = 623 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIE---VCRNKIHQKPLHRNSD-GTLSWEEVECQGACVN 146 G V VC T C+ G +K+ E I + D + + CQG C Sbjct: 22 GYTCRVLVCSGTGCIASGAQKIYEEMSRLCEGIEGVAVEMQKDVPHVGIVKTGCQGLCEL 81 Query: 147 APMVMIG--KDTYEDLTPERLEEIIDA 171 P++ I Y + + EI++ Sbjct: 82 GPLMRIEPYDYQYVHVQVDDCREIVEK 108 >gi|220929647|ref|YP_002506556.1| ferredoxin [Clostridium cellulolyticum H10] gi|219999975|gb|ACL76576.1| ferredoxin [Clostridium cellulolyticum H10] Length = 123 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%) Query: 90 VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 G + V + C + G +++ +I+Q+ L ++ +C G C P Sbjct: 25 KGIKVVVAMAT---CGIAAGARPVMKAFIEEINQRNL-----NNVTVSITDCIGVCKLEP 76 Query: 149 MVMI-GKD----TYEDLTPERLEEII 169 +V I KD TY ++TPE+ + ++ Sbjct: 77 VVEILDKDGKKVTYVNMTPEKAQRVV 102 >gi|30249826|ref|NP_841896.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC 19718] gi|30180863|emb|CAD85785.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC 19718] Length = 102 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 11/92 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C +++ + + + K L + G + C C Sbjct: 6 HHVFFCINQRANGERCCNDHHAQEMRDYAKAR--IKELKLSGKGKIRINNAGCLDRCSEG 63 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+++I + Y + E ++EII++ G+ Sbjct: 64 PVIVIYPEEVWYTYVDQEDIDEIIESHLQNGK 95 >gi|222481336|ref|YP_002567572.1| hypothetical protein Hlac_3465 [Halorubrum lacusprofundi ATCC 49239] gi|222454712|gb|ACM58975.1| hypothetical protein Hlac_3465 [Halorubrum lacusprofundi ATCC 49239] Length = 116 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC---V 145 HV VC C + + + + + + + E C G C Sbjct: 16 HVLVCTNARDSEYAACADAHGDAVYDAVEAWLRDHGVFWSP---VQLAETTCLGLCSADG 72 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 A + Y D+TPE + E++ Sbjct: 73 TAIAIQPRNRWYSDVTPEDVPELL 96 >gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Halanaerobium praevalens DSM 2228] Length = 601 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV +C T C+ G + L E ++ K L G + E C G C P++++ Sbjct: 7 RSHVLICTGTGCVSSGAKTLEESLEEELAAKDL----SGEIKIVETGCHGFCEKGPIMIV 62 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y ++ E + EI++ Sbjct: 63 YPEGVFYCEVQAEDVPEIVEE 83 >gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] Length = 628 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 14/89 (15%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRN----------KIHQKPLHRNSDGTLSWEEVECQ 141 +R + +C T C+ G ++ + + H + G L ++ C Sbjct: 24 SRCRILICAGTGCLAGGSGEIYRRMSELAEENPDIDVEFGPEIAHGS--GPLEVKKSGCH 81 Query: 142 GACVNAPMVMIG--KDTYEDLTPERLEEI 168 G C P++ I Y + PE EI Sbjct: 82 GFCEMGPLMRIEPAGILYTKVKPEDCNEI 110 >gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6] Length = 529 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ-----GDTIRP 182 C G+C PMV I YE + PE + I+ A + G+ GD +RP Sbjct: 62 CIGSCGQGPMVEIAPEGTLYEYVRPEDADAIVAAINGGECSVQRGDPLRP 111 >gi|94984131|ref|YP_603495.1| hypothetical protein Dgeo_0022 [Deinococcus geothermalis DSM 11300] gi|94554412|gb|ABF44326.1| Ferredoxin [Deinococcus geothermalis DSM 11300] Length = 111 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMV 150 TR H+ VC C RG L + N + + L G++ E C GAC P + Sbjct: 8 TRGHLLVCQGQNCQARGSALLYKALWNHLERAALAYYKQGGSVRLTESGCLGACSFGPAL 67 Query: 151 MI 152 + Sbjct: 68 CV 69 >gi|189500688|ref|YP_001960158.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides BS1] gi|189496129|gb|ACE04677.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides BS1] Length = 103 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 92 TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140 + H+ VC + C + +L+ +++ SD ++ C Sbjct: 4 PKHHILVCASFRSQGAPQGICHKKESLQLLPYLESEL--------SDRDMTDVVVSATGC 55 Query: 141 QGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P+V+I E + E+++EI+DA G+ Sbjct: 56 LNVCEKGPIVVIHPENHWYKEIDSEEKIDEILDALEEGEA 95 >gi|146281723|ref|YP_001171876.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri A1501] gi|145569928|gb|ABP79034.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri A1501] Length = 106 Score = 44.0 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 14/101 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C C +G E L + + + G ++ C G C Sbjct: 6 YHIFLCLQRRAEGHPRGSCAAKGGEALFDAFSQAL-IRRNLI---GRIALTGTGCLGPCQ 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 V+I G Y + P ++ I+ G+ + P Sbjct: 62 AGANVLIYPGALMYSWVEPADVDSILTHLLEGEPFADKLTP 102 >gi|300697246|ref|YP_003747907.1| ferredoxin protein [Ralstonia solanacearum CFBP2957] gi|299073970|emb|CBJ53507.1| putative ferredoxin protein [Ralstonia solanacearum CFBP2957] Length = 109 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDAASVRRIVDEHLAG 86 >gi|299068985|emb|CBJ40233.1| putative ferredoxin protein [Ralstonia solanacearum CMR15] Length = 109 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDAASVRRIVDEHLAG 86 >gi|299537832|ref|ZP_07051121.1| putative 2Fe-2S ferredoxin [Lysinibacillus fusiformis ZC1] gi|298726811|gb|EFI67397.1| putative 2Fe-2S ferredoxin [Lysinibacillus fusiformis ZC1] Length = 123 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + H+ +C + CM + E++ R++I ++ L D + C G C +A +V Sbjct: 8 GMKTHLFICNGSSCMKKDGEEITLAIRDEIQRQAL----DQEIHTTRTRCNGRCKDACVV 63 >gi|295675326|ref|YP_003603850.1| putative ferredoxin [Burkholderia sp. CCGE1002] gi|295435169|gb|ADG14339.1| putative ferredoxin [Burkholderia sp. CCGE1002] Length = 107 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 22/102 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C + + E + + K L G Sbjct: 3 SFY----------KHHVFFCLNQRDPGAERPSCANCNAQAMQEYAKKR--VKQLGLAGPG 50 Query: 132 TLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA 171 + + C C P +++ + Y + ++EI+++ Sbjct: 51 QVRINKAGCLDRCELGPALVVYPEAVWYTYVDESDIDEIVES 92 >gi|119899657|ref|YP_934870.1| ferredoxin 2Fe-2S protein [Azoarcus sp. BH72] gi|119672070|emb|CAL95984.1| probable ferredoxin 2Fe-2S protein [Azoarcus sp. BH72] Length = 108 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 15/103 (14%) Query: 89 PVGTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P + + VC C +GC ++ + + L + C Sbjct: 2 PKPKKHVL-VCVQGRPPGHPRGSCQQKGCGEVHQAFLEAFQARNLW----NEFAVTNTGC 56 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 G C+ P V++ Y +T + IID G R Sbjct: 57 LGPCMAGPSVLVYPDAVMYGGVTAADVGTIIDEHLIGGTPVER 99 >gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] Length = 634 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 14/90 (15%) Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GK--DTYEDLTP 162 G + + + ++ + + E+ C G C P+V + YE++T Sbjct: 47 GADDVYGLLSAELG-------PNDDATVEKTGCMGFCDREPLVEVIRPDGVSIIYENVTQ 99 Query: 163 ERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192 E ++ A G+ G R + Sbjct: 100 EDASQLAGAVEDGE--LPAEGALAARSHAE 127 >gi|209528066|ref|ZP_03276544.1| conserved hypothetical protein [Arthrospira maxima CS-328] gi|209491490|gb|EDZ91867.1| conserved hypothetical protein [Arthrospira maxima CS-328] Length = 118 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 14/97 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152 V VC C+ G E ++ + +D + E C G C P V + Sbjct: 27 CVLVCQHQSCLRNGSEGTLKAFED----------ADVPNVKVEASGCLGQCNIGPTVRVI 76 Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + Y + PE + I G+ + P+I Sbjct: 77 PDETWYYRVQPEDAKAIATQHLQGGKPVQEKLNPRIH 113 >gi|83747210|ref|ZP_00944253.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551] gi|207739071|ref|YP_002257464.1| ferredoxin protein [Ralstonia solanacearum IPO1609] gi|83726185|gb|EAP73320.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551] gi|206592443|emb|CAQ59349.1| ferredoxin protein [Ralstonia solanacearum IPO1609] Length = 109 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDAASVRRIVDEHLAG 86 >gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum] Length = 1048 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 11/85 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ ++ + T + G ++ E + ++ L+ C G C N P++ Sbjct: 2 TKTNIYIGMATCGLASGARRIQEAVEKESRERGYE------LAIHPTGCIGMCHNEPILE 55 Query: 152 IG-----KDTYEDLTPERLEEIIDA 171 + + TY +TPE + I+++ Sbjct: 56 VEVPGQPRITYAQVTPESVPAILES 80 >gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] Length = 594 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 13/81 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + +CG T C+ +++ + + + K + C G C P+V Sbjct: 6 KILICGGTGCLSSKSDEIKKNLEKYIAEYNVKDVE--------VVLTGCFGFCEKGPIVK 57 Query: 152 I--GKDTYEDLTPERLEEIID 170 I Y ++ PE EEII Sbjct: 58 IVPENTFYIEVKPEDAEEIIK 78 >gi|187779576|ref|ZP_02996049.1| hypothetical protein CLOSPO_03172 [Clostridium sporogenes ATCC 15579] gi|187773201|gb|EDU37003.1| hypothetical protein CLOSPO_03172 [Clostridium sporogenes ATCC 15579] Length = 81 Score = 44.0 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C + C L+G K+I + +N I + L + + C G C V +G Sbjct: 3 TINICVGSACHLKGSYKVITLLQNFIEKNNLKD----KVEIKGSFCLGHCTEGVSVNVGD 58 Query: 155 DTYEDLTPERLEE 167 Y + E EE Sbjct: 59 KIYS-VNEENAEE 70 >gi|167761229|ref|ZP_02433356.1| hypothetical protein CLOSCI_03634 [Clostridium scindens ATCC 35704] gi|167660895|gb|EDS05025.1| hypothetical protein CLOSCI_03634 [Clostridium scindens ATCC 35704] Length = 90 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C + C +RG + +IE K +D + C GAC V I + Sbjct: 9 KVLICIGSSCHVRGSKDVIETFTRLT--KEHRDVAD--IELSGSFCMGACSKGVSVKIRE 64 Query: 155 DTYEDLTPERLEE 167 + Y + P E+ Sbjct: 65 NIY-HVKPGDAED 76 >gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] Length = 623 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150 V VC T C+ G +K+ + + + D + + CQG C P++ Sbjct: 26 RVLVCSGTGCIASGAQKIYDEMAKLCENLDWVSVEMQKDVPHVGVVKTGCQGLCELGPLM 85 Query: 151 MIG--KDTYEDLTPERLEEIIDA 171 I Y + E +EI++ Sbjct: 86 KIEPYDYQYVHVQVEDCKEIVER 108 >gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 619 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 18/135 (13%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 +L+ + + V T + G +K+ + N + K L + C G C Sbjct: 14 RLAEKAKKTIIVVGMGTCGIAAGGDKVWQALENAVKNKNLD------IELVYSGCIGLCY 67 Query: 146 NAPMVMIG-----KDTYEDLTPERLEEIIDAFS-TGQGDTIRPGPQIDRISSAPAGGLTS 199 P++ + + Y ++ E +I++ + G+ + ++ P G T Sbjct: 68 VEPIMEVHRPDMPRVIYGNVNGETALKILEEHALNGKVVSDLA------VAQDPKEGKTV 121 Query: 200 LLDNNSKKRGKKKKD 214 L + K Sbjct: 122 LPEIPILNEMPFYKK 136 >gi|89902562|ref|YP_525033.1| ferredoxin-like protein [Rhodoferax ferrireducens T118] gi|89347299|gb|ABD71502.1| Ferredoxin-like [Rhodoferax ferrireducens T118] Length = 127 Score = 43.6 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 13/102 (12%) Query: 86 QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 L P + HV C C ++ + C+ + K G + + Sbjct: 15 DLQPPKSYYERHVFFCLNERKNGEPCCAQYQAQQAFDHCKTQ--VKAAGLAGPGQVRVNK 72 Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 C C P++++ + Y L ++EI+ + GQ Sbjct: 73 AGCMDRCAAGPVLVVYPEAVWYTYLDNADIDEIVASHLKNGQ 114 >gi|159482310|ref|XP_001699214.1| hypothetical protein CHLREDRAFT_185361 [Chlamydomonas reinhardtii] gi|158273061|gb|EDO98854.1| predicted protein [Chlamydomonas reinhardtii] Length = 227 Score = 43.6 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 T+ +QVC C +G E +I+ + + + + G C G C N P + Sbjct: 17 TKLELQVCIHRSCKRQGSENIIKFVND-LGISEVKATTTG--------CLGNCGNGPNAV 67 Query: 150 VMIGKDTYEDL-TPERLEEIIDAF 172 ++ + + TP + +++ + Sbjct: 68 LLPAEQLLHHVATPADVAQVLQSL 91 >gi|293376712|ref|ZP_06622935.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|325845175|ref|ZP_08168483.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1] gi|292644669|gb|EFF62756.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|325488771|gb|EGC91172.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1] Length = 122 Score = 43.6 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 G V V T + G ++ N+++Q+ L + + C G C Sbjct: 21 RDHEGKEVRVVVGMGTCGISAGARPVLNELVNEVNQRHLE-----HVVITQTGCIGMCTY 75 Query: 147 APMVMI----GKDTYEDLTPERLEE-IIDAFSTGQ 176 PM + GK TY +TPE++++ +++ G Sbjct: 76 EPMFDVFDAFGKTTYVHMTPEKVKKVVLEHLVNGN 110 >gi|114331325|ref|YP_747547.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91] gi|114308339|gb|ABI59582.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91] Length = 102 Score = 43.6 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 11/92 (11%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C + + + + + K L + G + C C Sbjct: 6 HHVFFCVNQRGNCEGCCNDYHAQAMRDYAKAR--IKELKLSGKGKIRINNAGCLDRCNEG 63 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P++++ + Y + E ++EII++ GQ Sbjct: 64 PVIVVYPEEVWYTYVDQEDIDEIIESHLKNGQ 95 >gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus obeum A2-162] Length = 623 Score = 43.6 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150 V VC T C+ G +K+ + + + D + + CQG C P++ Sbjct: 26 RVLVCSGTGCIASGAQKIYDEMMKLCENLDWVSVEMQKDVPHVGVVKTGCQGLCELGPLM 85 Query: 151 MIG--KDTYEDLTPERLEEIIDA 171 I Y + E +EI++ Sbjct: 86 KIEPYDYQYVHVQVEDCKEIVER 108 >gi|209521268|ref|ZP_03269988.1| putative ferredoxin [Burkholderia sp. H160] gi|209498310|gb|EDZ98445.1| putative ferredoxin [Burkholderia sp. H160] Length = 129 Score = 43.6 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 23/108 (21%) Query: 80 TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131 +FY + HV C C + + E + + K L G Sbjct: 26 SFY----------KHHVFFCLNQREPGAERPSCANCNAQAMQEYAKKR--VKQLGLAGPG 73 Query: 132 TLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 + + C C P +++ + Y + ++EI+++ + G+ Sbjct: 74 QVRINKAGCLDRCELGPTLVVYPEAVWYTYVDESDIDEIVESHLAKGK 121 >gi|116784081|gb|ABK23206.1| unknown [Picea sitchensis] Length = 339 Score = 43.6 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 35/128 (27%) Query: 68 LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127 + + V + ++VC + C G E L+ +I++ + Sbjct: 231 MGIPVQEVNSV-----------------IKVCMSGKCKKSGSEMLLGAFEERINKSGIG- 272 Query: 128 NSDGTLSWEEVEC--QGACVNAPMVMIG-------KDTYEDLTPERLEEIIDA---FSTG 175 E V C G C NAP V + + + ++ I+ + Sbjct: 273 -----FDVEAVGCKCMGKCRNAPSVRVQTEEDVGKGVMHMGVNIGDIDLILAQHFGLNLQ 327 Query: 176 QGDTIRPG 183 Q + + G Sbjct: 328 QPPSPKEG 335 >gi|288870988|ref|ZP_06116012.2| Fe-hydrogenase, gamma subunit [Clostridium hathewayi DSM 13479] gi|288865172|gb|EFC97470.1| Fe-hydrogenase, gamma subunit [Clostridium hathewayi DSM 13479] Length = 102 Score = 43.6 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 19 SEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65 S E+ + + E+ S Y + ++I +L AQ G++ + VA Sbjct: 57 SPETLLGRIGELASEY--RGKEGSLISVLHMAQGIYGYLPLEVQKTVA 102 >gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 624 Score = 43.6 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRN-----SDGTLSWEEVECQGACVNAP 148 + +C T C+ G + E + +K + + D T+ ++ C G C P Sbjct: 26 ILICAGTGCVAGGSLDIYEEFIKLMKEKEINCEVSLEKEPHDETVGIKKSGCHGFCEMGP 85 Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171 +V I Y + PE EI++ Sbjct: 86 LVRIEPFGYLYIKVKPEDCAEILEK 110 >gi|17548848|ref|NP_522188.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000] gi|17431097|emb|CAD17778.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000] Length = 109 Score = 43.6 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 5/89 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E N + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFNVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDT 179 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDAASVRRIVDEHLAGGAPV 90 >gi|300693525|ref|YP_003749498.1| ferredoxin protein [Ralstonia solanacearum PSI07] gi|299075562|emb|CBJ34855.1| putative ferredoxin protein [Ralstonia solanacearum PSI07] Length = 109 Score = 43.6 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDTASVRRIVDEHLAG 86 >gi|262196840|ref|YP_003268049.1| ferredoxin [Haliangium ochraceum DSM 14365] gi|262080187|gb|ACY16156.1| putative ferredoxin [Haliangium ochraceum DSM 14365] Length = 106 Score = 43.6 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%) Query: 93 RAHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 R H+ VC C RG + L + + + P ++ C G C Sbjct: 4 RHHIFVCTNERPAGGKPACGGRGGDALADEFERAVARHP---TLCRAVAVTRCGCLGPCF 60 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 + P ++I Y + + +I++ G Sbjct: 61 DGPNLVIYPEGIWYAGVESADVADIVEQHLLG 92 >gi|126658029|ref|ZP_01729181.1| hypothetical protein CY0110_05422 [Cyanothece sp. CCY0110] gi|126620667|gb|EAZ91384.1| hypothetical protein CY0110_05422 [Cyanothece sp. CCY0110] Length = 185 Score = 43.6 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152 + VC + C RG E + + K+ Q+ L SD + + C C P ++M Sbjct: 107 KILVCQKSSCWKRGGESVCQQLEQKLEQQGL---SD-RVKVKLTGCLKQCKKGPNVVIMP 162 Query: 153 GKDTYEDLTPERLEEIIDA 171 K Y + P +E++++ Sbjct: 163 HKARYCQVQPREVEQLLNK 181 >gi|259418140|ref|ZP_05742059.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259347046|gb|EEW58860.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 239 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 P R H+ VC C ++ L + + + + + ++ C C P Sbjct: 136 PPAHRHHLLVCTGPRCHVKDAPNLADALKVE--IRRAGLSDSCLVT--TTGCVFPCNAGP 191 Query: 149 MVM 151 +++ Sbjct: 192 VIV 194 >gi|99082773|ref|YP_614927.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040] gi|99039053|gb|ABF65665.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040] Length = 239 Score = 43.2 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 36/131 (27%) Query: 50 QEQEGWVSRAAIEVVANILDMAYIRVL-------------EIATFYTQFQLS-------- 88 Q E W+ AA A + V +A+ + L Sbjct: 71 QSLENWLPGAAGAWCAQQNGVPP-EVFFASSPEHDDDVIRAVAS--AEVSLQRVVDRPRG 127 Query: 89 --------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 P + H+ VC C L+ L + +++ + ++ C Sbjct: 128 EIGKGWDLPPPHQHHLLVCTGPRCHLKDAPNLADHLKSE--IRRAGLGDSCLVT--TTGC 183 Query: 141 QGACVNAPMVM 151 C P+++ Sbjct: 184 VFPCNAGPVIV 194 >gi|46562236|ref|YP_009050.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris str. Hildenborough] gi|46447773|gb|AAS94439.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris str. Hildenborough] gi|311235392|gb|ADP88245.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris RCH1] Length = 100 Score = 43.2 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 16/96 (16%) Query: 94 AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ VC + C+ +G L+ +I + L C C Sbjct: 6 HHILVCMSFRGLEPKGTCIRKGAPDLVAHLDAEIAARGL-----NAF-VSTTGCLQFCDK 59 Query: 147 APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDT 179 P++++ G + ++ I+DA G+ T Sbjct: 60 GPVLVVYPQGHWYGGGDDEDAVDAILDALEAGEPCT 95 >gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 43.2 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVNAPMVMI 152 ++ C C+ + E +I D + V C G C P+V + Sbjct: 21 CIRCCTVGGCLSANALAVKEQIEVEIA------TQDLNPPMHVRGVGCMGLCSRGPLVRL 74 Query: 153 G--KDTYEDLTPERLEEII 169 Y+ +TPE E++ Sbjct: 75 DPAGILYDQVTPEDAPELV 93 >gi|302816843|ref|XP_002990099.1| hypothetical protein SELMODRAFT_447911 [Selaginella moellendorffii] gi|300142112|gb|EFJ08816.1| hypothetical protein SELMODRAFT_447911 [Selaginella moellendorffii] Length = 236 Score = 43.2 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 9/57 (15%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 R V+VC T C G + ++ +N + +S E C G C + P Sbjct: 25 KRREVRVCTHTTCRKSGSLQTLQALQNL---------APAAVSVESCGCLGRCGSGP 72 >gi|114776526|ref|ZP_01451571.1| hypothetical protein SPV1_02362 [Mariprofundus ferrooxydans PV-1] gi|114553356|gb|EAU55754.1| hypothetical protein SPV1_02362 [Mariprofundus ferrooxydans PV-1] Length = 88 Score = 43.2 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC C G L + K +C+ C +AP+V++ Sbjct: 21 TIEVCHGPQCSDSGGRALAAELEE-MGLK-----------VCAGDCRSQCAHAPLVLVDN 68 Query: 155 DTYEDLTPERLEEIIDAFST 174 T +++ E + Sbjct: 69 YMISKATTDKVVERLKTLQA 88 >gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 627 Score = 43.2 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQGACVN 146 + VC T C+ G K+ E + I +K L + +G + C G C Sbjct: 26 RILVCAGTGCVANGSLKIYEKLKKMISEKGLLAEVELVKEVSHEG-IGVNISGCHGFCQM 84 Query: 147 APMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIR 181 P+V Y + E +EEI++ G G R Sbjct: 85 GPLVRFEPSGLLYVKVKEEDVEEIVNTTVIGNGVVER 121 >gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 656 Score = 43.2 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 16/122 (13%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-------CQGAC 144 ++ VC T C+L G ++ + + ++ + + E + C G C Sbjct: 25 QKSRFLVCAGTGCVLGGALEVYQEFVRLLKERGCPTSVELLFEGRETDAGAAYSGCHGFC 84 Query: 145 VNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202 P+V Y +T + EII + +T+ ++R+ G SL + Sbjct: 85 QLGPLVRFEPKGIFYTQVTAADVPEIIT--TALDKNTV-----VERLLYQNPDGSKSLRE 137 Query: 203 NN 204 + Sbjct: 138 ED 139 >gi|21674360|ref|NP_662425.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS] gi|21647538|gb|AAM72767.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS] Length = 102 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 22/100 (22%) Query: 92 TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140 + H+ VC + C + LI +++ +D +S C Sbjct: 4 PKHHIFVCASFRAQGAPQGMCHKKESLNLIPYLESEL--------ADRGMSDVAVSATAC 55 Query: 141 QGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177 C P++++ E + ++++EI+DA GQ Sbjct: 56 LNLCEKGPVLVVYPENFWYGEIDSEDKVDEILDALEEGQA 95 >gi|115378568|ref|ZP_01465723.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1] gi|310820735|ref|YP_003953093.1| NADH dehydrogenase I chain f [Stigmatella aurantiaca DW4/3-1] gi|115364440|gb|EAU63520.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1] gi|309393807|gb|ADO71266.1| NADH dehydrogenase I chain F [Stigmatella aurantiaca DW4/3-1] Length = 118 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 26/102 (25%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + VC C G + + ++ Q+ L C G C P V+ Sbjct: 2 KRYRLSVCKGMDCKANGSNAVFAAAQEELTQRGLAP----RCEAYRGGCYGFCHMGPNVV 57 Query: 152 IGKD----------------------TYEDLTPERLEEIIDA 171 I +D Y + PER+ +I Sbjct: 58 IREDTGRKKDPLSPEDYQLMGWPGEVYYSRMNPERMRRVIAE 99 >gi|171060902|ref|YP_001793251.1| ferredoxin-like protein [Leptothrix cholodnii SP-6] gi|170778347|gb|ACB36486.1| ferredoxin-like protein [Leptothrix cholodnii SP-6] Length = 131 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ C + C + + C+ + K G + + C C P Sbjct: 30 HIFFCLNQRDNGQSSCADFPAQAAFDHCKKQ--VKAAGLAGPGQVRVNKAGCLDRCAGGP 87 Query: 149 MVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 + ++ + Y + ++EI+++ GQ Sbjct: 88 VAVVYPEAVWYSFVDNSDIDEIVESHLKNGQ 118 >gi|15605694|ref|NP_213071.1| ferredoxin [Aquifex aeolicus VF5] gi|2982853|gb|AAC06474.1| ferredoxin [Aquifex aeolicus VF5] Length = 65 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 135 WEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C AC+ P+V++ Y + PE ++EI++ G R Sbjct: 5 ITPTGCMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVER 53 >gi|310641711|ref|YP_003946469.1| NADH-ubiquinone oxidoreductase 51 kda subunit [Paenibacillus polymyxa SC2] gi|309246661|gb|ADO56228.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paenibacillus polymyxa SC2] Length = 87 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEE 167 +++ + R + + +H C G C +A +V++ D Y +TP E Sbjct: 10 QEIRDEIRKQHAEAYIHTT--------RTRCNGRCHDAAVVIVYPQGDWYGQMTPASGTE 61 Query: 168 IIDAFSTGQGDTIR 181 ++ G+ Sbjct: 62 LVQKLVAGEKLEPH 75 >gi|222099661|ref|YP_002534229.1| NADP-reducing hydrogenase, subunit B [Thermotoga neapolitana DSM 4359] gi|221572051|gb|ACM22863.1| NADP-reducing hydrogenase, subunit B [Thermotoga neapolitana DSM 4359] Length = 126 Score = 43.2 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G R + V T + G ++ ++ +++ + ++ + C G C P Sbjct: 27 TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEHGV-----NDVAVVQSGCMGLCEVEPT 81 Query: 150 VMIGKD-----TYEDLTPERLEEIID 170 V + + Y +TPE I+ Sbjct: 82 VEVRLEGQEPVVYGRVTPENARRIVK 107 >gi|312878986|ref|ZP_07738786.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260] gi|310782277|gb|EFQ22675.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260] Length = 123 Score = 43.2 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 10/84 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---M 149 + + + T + G ++E +++++ L +S E C G C P + Sbjct: 28 KTRIIIGLGTCGIAAGARAVMEAVMEELNKRGLK-----DVSVEGTGCIGMCQQEPLLDV 82 Query: 150 VMIGK--DTYEDLTPERLEEIIDA 171 + G+ TY +T + + I+ Sbjct: 83 IRPGEPRITYGRVTAQDVPRIVAD 106 >gi|288574746|ref|ZP_06393103.1| NADH dehydrogenase I, F subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570487|gb|EFC92044.1| NADH dehydrogenase I, F subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 124 Score = 43.2 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 10/83 (12%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 V V T + G ++++ +I ++ L +S + C G C P++ + Sbjct: 29 VKVIVGMGTCGIAAGAREVMDAVLKEIEKRGLK-----DVSVQTTGCIGMCQEEPLLDVI 83 Query: 153 ----GKDTYEDLTPERLEEIIDA 171 G+ TY +TPE + I+ Sbjct: 84 YPNKGRITYGRVTPEDVPRIVSE 106 >gi|217977899|ref|YP_002362046.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocella silvestris BL2] gi|217503275|gb|ACK50684.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocella silvestris BL2] Length = 114 Score = 43.2 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 19/123 (15%) Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 + VA LD+ + + F P G CM G + L E + K Sbjct: 1 MSSVAE-LDLPVVFKYHVI---ACFTKRPPGHPRG-------SCMESGAQPLWEHLQKK- 48 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGD 178 + + C C P++++ Y T + ++EI+D G G+ Sbjct: 49 -VEAQRLTD---VCVTASGCLSFCRAGPLMVVYPEGVWYHPETVDDIDEIVDRHF-GAGE 103 Query: 179 TIR 181 + Sbjct: 104 PVE 106 >gi|239616589|ref|YP_002939911.1| NADP-reducing hydrogenase, subunit B [Kosmotoga olearia TBF 19.5.1] gi|239505420|gb|ACR78907.1| NADP-reducing hydrogenase, subunit B [Kosmotoga olearia TBF 19.5.1] Length = 125 Score = 43.2 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R + V T + G ++ ++ +++K + ++ + C G C P + Sbjct: 28 KRGKIIVAMGTCGIAAGAKETLKAIVETLNEKGID-----DIAVVQSGCFGLCDVEPTIE 82 Query: 152 I---GKDT--YEDLTPERLEEIIDA 171 + + Y +TP + + II+ Sbjct: 83 VHMENSEPIIYGHVTPAQAKRIIEQ 107 >gi|110596761|ref|ZP_01385051.1| ferredoxin, 2Fe-2S [Chlorobium ferrooxidans DSM 13031] gi|110341448|gb|EAT59908.1| ferredoxin, 2Fe-2S [Chlorobium ferrooxidans DSM 13031] Length = 102 Score = 43.2 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 22/99 (22%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140 + H+ VC TP C + LI +++ +D +S C Sbjct: 4 PKHHILVCASFRAQGTPQGICHKKESLSLIPYIESEL--------ADRGMSDVAVSATGC 55 Query: 141 QGACVNAPMVMI--GKDTYEDLTPE-RLEEIIDAFSTGQ 176 C P++++ Y ++ E ++++I+DA G+ Sbjct: 56 LNLCEKGPVLVVYPENFWYGEIDSEGKIDDILDALEEGE 94 >gi|22299462|ref|NP_682709.1| hypothetical protein tlr1919 [Thermosynechococcus elongatus BP-1] gi|22295645|dbj|BAC09471.1| tlr1919 [Thermosynechococcus elongatus BP-1] Length = 172 Score = 43.2 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 14/78 (17%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 V +C + C RG ++L + ++ + + C G C P V+I Sbjct: 101 RVLICQKSSCCRRGAKELWQELEAQQLPI-----------TLKATGCMGECKRGPAVVIL 149 Query: 153 -GKDTYEDLTPERLEEII 169 K +++ E++ Sbjct: 150 PQKKRLTRANAQQIRELV 167 >gi|310826465|ref|YP_003958822.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612] gi|308738199|gb|ADO35859.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612] Length = 132 Score = 43.2 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 11/98 (11%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 L V V T + G ++ ++ + L ++ + C G C Sbjct: 19 INLRKGKDGYRVVVGMATCGIAAGARPVMVKLMEEVEAQGLK-----DVTVAQTGCIGVC 73 Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEIIDA-FSTGQ 176 P+V + K TY +TPE+++ I+D G+ Sbjct: 74 RLEPIVEVYNPEGEKVTYVKMTPEKVQRIVDEHLKNGK 111 >gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus] Length = 496 Score = 43.2 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Query: 38 CQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 + ++ +L+ ++ +G +S A + VA L + E+AT + + A Sbjct: 27 QRGRLLEILLEVRDAKGGVGISPAGLAAVAEHLRLFPSEAYEVATAFPAVNYAAATPYAT 86 Query: 96 VQVCGTTPCMLRGCEKLIEVCRNK 119 + CG C L VCRN+ Sbjct: 87 -EGCGDLVCGLLQGAPGAGVCRNR 109 >gi|260219751|emb|CBA26595.1| Ferredoxin, 2Fe-2S [Curvibacter putative symbiont of Hydra magnipapillata] Length = 116 Score = 43.2 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ C C ++ + C+ K + G + + C C P Sbjct: 15 HIFFCLNERKNGEDCCAHHNAQEGFDRCKQL--VKEAGLSGPGQVRVNKAGCLDRCAAGP 72 Query: 149 MVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176 + ++ + Y + + +EEI+++ G+ Sbjct: 73 VAVVYPEAVWYTFVDAQDIEEIVESHLKNGK 103 >gi|119713521|gb|ABL97574.1| putative ferredoxin 2fe-2s protein [uncultured marine bacterium EB0_35D03] Length = 74 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 G L E C G C N P++++ Y+ + E ++EI+++ +G+ Sbjct: 18 GGLGVSESRCLGRCENGPVLVVYPDNVWYQYIDEEDIDEILESHLESGK 66 >gi|312144190|ref|YP_003995636.1| ferredoxin-like protein [Halanaerobium sp. 'sapolanicus'] gi|311904841|gb|ADQ15282.1| ferredoxin-like protein [Halanaerobium sp. 'sapolanicus'] Length = 121 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GTR + V T + G ++++ ++ D + + C G C P++ Sbjct: 24 GTRPEIIVGMGTCGIAAGAREILKAILEEVE------TRDIDVRVTQTGCIGMCEKEPLI 77 Query: 151 ---MIGKD--TYEDLTPERLEEIIDA 171 M GK+ TY +L+ ++EII Sbjct: 78 DVRMPGKERITYGNLSKTDVKEIISK 103 >gi|209966077|ref|YP_002298992.1| ferredoxin, 2Fe-2S [Rhodospirillum centenum SW] gi|209959543|gb|ACJ00180.1| ferredoxin, 2Fe-2S [Rhodospirillum centenum SW] Length = 132 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 21/91 (23%) Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQ 141 RAHV C C RG E L + + + + + + C Sbjct: 14 RAHVFCCTNERPEGHPRGSCKRRGAEPLRDYMKKRATALGLRG--------IRVNAAGCL 65 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIID 170 C P++++ Y + ++EI++ Sbjct: 66 DRCELGPVMVVYPEGVWYGFSSEADIDEILE 96 >gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] Length = 584 Score = 42.8 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + +C T + G EK+ + R + D + V +V Sbjct: 2 KNRILICTGTSGISAGAEKVAKFFRE--GIQHHKLEDDYDVVVTGDRGLFRDVLVDIVPP 59 Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181 + TYE +TPE + I++ +G+ ++ Sbjct: 60 DGERITYEFVTPEDVSTIVEEHLV-KGEPVK 89 >gi|114321392|ref|YP_743075.1| ferredoxin, 2Fe-2S [Alkalilimnicola ehrlichii MLHE-1] gi|114227786|gb|ABI57585.1| ferredoxin, 2Fe-2S [Alkalilimnicola ehrlichii MLHE-1] Length = 103 Score = 42.8 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%) Query: 93 RAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 R H+ C C RG + + + + K L G L C C Sbjct: 5 RRHMFFCTNRREGDERPCCCNRGGAEAKDYVKAR--AKALGLTGPGGLRVNAAGCLDRCE 62 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+ ++ Y + E L+E++D Sbjct: 63 EGPVAVVYPEGVWYTWVDEEDLDELVDE 90 >gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 634 Score = 42.8 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 18/96 (18%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----------CQGA 143 + +C T C+ G ++ + + D L ++ E CQG Sbjct: 28 RIIICAGTGCVANGSLEVRDALAEALK----EAGVDVALELKKEEEHTGTYISKSGCQGF 83 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 C P++ I G Y + + EI++ G+ Sbjct: 84 CQMGPLLHIEPGDILYTKVKVSDVPEIVERTLKKGE 119 >gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] Length = 622 Score = 42.8 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTL---SWEEVECQGACVNAPMV 150 + +C T C+ G + + + + + +G + ++ C G C P++ Sbjct: 26 RILICAGTGCISGGSQFIYDKMKELVGDNENVEVKFEGHVPHPEVKKSGCHGFCEMGPLM 85 Query: 151 MIG--KDTYEDLTPERLEEI 168 I Y + PE EEI Sbjct: 86 RIEPLNILYVKVQPEDCEEI 105 >gi|332296988|ref|YP_004438910.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Treponema brennaborense DSM 12168] gi|332180091|gb|AEE15779.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Treponema brennaborense DSM 12168] Length = 131 Score = 42.8 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 9/84 (10%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + V T + G + +E ++ K + G++ + C G C N P V Sbjct: 27 GKTFQIIVGMGTCGIAAGAKPTLEAFIKELDAKGMA----GSVIIRQTGCMGMCANEPTV 82 Query: 151 MI-----GKDTYEDLTPERLEEII 169 + Y ++TPE ++I+ Sbjct: 83 EVIAPDMPAVIYGNVTPEVAKQIV 106 >gi|144897802|emb|CAM74666.1| Ferredoxin, 2Fe-2S [Magnetospirillum gryphiswaldense MSR-1] Length = 107 Score = 42.8 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 23/100 (23%) Query: 93 RAHVQVCGTT--------PCMLRGC-----EKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139 + HV VC T+ C +G ++++ + + + +S + Sbjct: 4 KYHVFVCTTSRPAGHPRGCCTSKGGGTAMFDQMMARFQKGMLWEKG-------VSLAQAS 56 Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 C G C N P++++ Y+ + +EI+D+ F GQ Sbjct: 57 CLGFCGNGPLMVVYPEGIWYQPVEAADYDEIVDSHFKKGQ 96 >gi|327479970|gb|AEA83280.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri DSM 4166] Length = 106 Score = 42.8 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 14/101 (13%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C C +G E L + + + G ++ C G C Sbjct: 6 YHIFLCLQRRAEGHPRGSCAAKGGEALFDAFSQAL-IRRNLI---GRIALTGTGCLGPCQ 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184 V+I G Y + P + I+ G+ T + P Sbjct: 62 AGANVLIYPGALMYSWVEPADADGILTHLLEGEPFTDKLTP 102 >gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] Length = 624 Score = 42.8 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP------LHRNSDGTLSWEEVECQGACVNAP 148 V VC T C+ G + E R + +K L + + + + C G C P Sbjct: 26 RVSVCAGTGCLAGGSLEFYERLRAIVAEKGLLVDVRLEKEPEHGIGVHKSGCHGFCEMGP 85 Query: 149 MVMIG--KDTYEDLTPERLEEIID 170 +V I Y + PE EEI + Sbjct: 86 IVRIEPAGYLYLRVKPEDAEEIAE 109 >gi|308270213|emb|CBX26825.1| hypothetical protein N47_A08540 [uncultured Desulfobacterium sp.] Length = 100 Score = 42.8 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNK-------IHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ VC C RG E + R + + ++ + R + +S C C + Sbjct: 6 YHIFVC----CSFRGIEAKGKCLRKESPNLIPYLQEELVDRGLNAMVS--SSGCLNRCDD 59 Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTG 175 P ++I Y ++ E ++EI+DA G Sbjct: 60 GPAMVIYPQGIWYGNVNGEAEVDEILDALEEG 91 >gi|207724362|ref|YP_002254759.1| ferredoxin protein [Ralstonia solanacearum MolK2] gi|206589580|emb|CAQ36541.1| ferredoxin protein [Ralstonia solanacearum MolK2] Length = 109 Score = 42.8 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 HV +C C G E E + Q + C C P++++ Sbjct: 5 HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61 Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175 Y +L + I+D G Sbjct: 62 YPDGVWYRNLDATSVRRIVDEHLAG 86 >gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator MP104C] Length = 539 Score = 42.8 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 12/62 (19%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 V VC +T C G E+L + R + + + + C G C + Sbjct: 5 TQVLVCTSTACRSSGGEQLFKALRREIKNLGLD---------VRVVKTGCYGFCGLGSVA 55 Query: 151 MI 152 ++ Sbjct: 56 VV 57 >gi|186474979|ref|YP_001856449.1| putative ferredoxin [Burkholderia phymatum STM815] gi|184191438|gb|ACC69403.1| putative ferredoxin [Burkholderia phymatum STM815] Length = 107 Score = 42.8 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + HV C C +++ E + + K L G + + C C Sbjct: 6 KHHVFFCLNQREPGASRPSCANCNAQEMQEYAKKR--VKQLGLAGPGQVRINKAGCLDRC 63 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 P +++ Y + ++EI+++ + G+ Sbjct: 64 EEGPTIVVYPEGVWYTYIDKTDIDEIVESHLANGK 98 >gi|194335513|ref|YP_002017307.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1] gi|194307990|gb|ACF42690.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1] Length = 100 Score = 42.8 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 AHV VC RG EK ++K+ Q + G + C G C N Sbjct: 11 AHVFVCTND----RGGEKKSCADNNSQLTKDKLKQAVDEKGWKGKVRISTSGCMGLCGNG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 VMI K + + P+ ++EI+ A Sbjct: 67 SHVMIYPQKVWFSGVLPDDVDEIVSA 92 >gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619] gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619] Length = 519 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 21/91 (23%) Query: 99 CGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEE-VECQ---GACVNAPM 149 C + + G ++++E + + + +S G E VEC+ G P+ Sbjct: 8 CDSVARAV-GADQVVEALQREAERRQLALDIQRTSSRGLYWLEPLVECERAEGRQGFGPV 66 Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 TPE + ++DA + G Sbjct: 67 -----------TPEDVPALLDALAAEPGSHP 86 >gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 628 Score = 42.4 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN------SDGTLSWEEVECQGACV 145 + +CG T C+ G + + I + L + + ++ C G C Sbjct: 23 QYKQILICGGTGCVAGGSLNIYARLKELIEESGLDVSVSLEDEPHEAVGIKKSGCHGFCE 82 Query: 146 NAPMVMIG--KDTYEDLTPERLEEIIDA 171 P++ I Y + E EEI++ Sbjct: 83 MGPLLRIEPAGVLYIKVKVEDCEEIVEQ 110 >gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] Length = 627 Score = 42.4 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQGA 143 + + VC T C+ G K+ + I +K L + +G ++ C G Sbjct: 23 EKMRILVCAGTGCVANGSLKVYAALKRMIEEKGLLTSVELVEEVSHEG-IAVNISGCHGF 81 Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIID 170 C P+V Y + E EEI++ Sbjct: 82 CQMGPLVRFEPSGLLYCKVKEEDAEEIVN 110 >gi|154495353|ref|ZP_02034358.1| hypothetical protein PARMER_04410 [Parabacteroides merdae ATCC 43184] gi|154085277|gb|EDN84322.1| hypothetical protein PARMER_04410 [Parabacteroides merdae ATCC 43184] Length = 132 Score = 42.4 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 +++ T + G ++++ + ++ D ++ + C G C P V + Sbjct: 34 VQIRISMATCGIAAGAKEIMNYFIEALDREK----VDALVT--QTGCMGYCYAEPTVEVT 87 Query: 153 --GKD--TYEDLTPERLEEIIDAF-STGQ 176 GK+ + + +++EIID + G+ Sbjct: 88 LPGKEPLVFGHVKKAKVDEIIDRYIRNGE 116 >gi|168023109|ref|XP_001764081.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684820|gb|EDQ71220.1| predicted protein [Physcomitrella patens subsp. patens] Length = 619 Score = 42.4 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 12/81 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC C G ++++ ++ P +S +C G C +AP V + Sbjct: 519 KIEVCTVGKCRKGGSQQILASLKS---IVP----ESSNISVTSCKCMGKCKSAPNVRVKN 571 Query: 155 -----DTYEDLTPERLEEIID 170 + ++ + + + D Sbjct: 572 SERQSHLHSHVSEDDADTLFD 592 >gi|166367039|ref|YP_001659312.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843] gi|166089412|dbj|BAG04120.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843] Length = 99 Score = 42.4 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V VC + C+++G +L+ + + + CQG C +P V Sbjct: 5 QKRFVMVCQHSSCLVQGASELLLAWQTAALPED--------VIVMTSGCQGQCSTSPTVR 56 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176 I + Y + PE + +I++ GQ Sbjct: 57 IIPEETWYCRVKPEDVNQIVEEHLKNGQ 84 >gi|225437783|ref|XP_002273957.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 341 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 21/108 (19%) Query: 86 QLSPVGT-RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + VG + ++VC C G L+E + ++ K +C G C Sbjct: 237 NTNRVGESKTRIEVCMGGKCRKLGAAMLLEEFQRQVGTKAG---------VVPCKCMGRC 287 Query: 145 VNAPMV----MIGKDTYED-------LTPERLEEIIDAFSTGQGDTIR 181 + P V +G + + + + I+ S G+ + Sbjct: 288 RDGPNVKGVEEVGWGSCSKSSSHWCGVGLDEISVIVADLSDGRSNKPH 335 >gi|78187393|ref|YP_375436.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273] gi|78167295|gb|ABB24393.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273] Length = 102 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 16/97 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC P C + LI +++ ++ C Sbjct: 4 PKHHIFVCASFRAQGAPQGICRKKESLSLIPYFESELA-DRGMT----DVAVSATACLNL 58 Query: 144 CVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177 C P+V+I Y ++ ++++EI+DA G+ Sbjct: 59 CEKGPIVVIYPENFWYGEVDSEDKVDEILDALEEGEA 95 >gi|251771319|gb|EES51900.1| probable ferredoxin [Leptospirillum ferrodiazotrophum] Length = 110 Score = 42.4 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 15/110 (13%) Query: 93 RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 RAH+ +C C RG E L+E+ + + K C AC Sbjct: 5 RAHLFLCTNERPADHPRGSCRARGAEPLLEIIKEEAR-KAGVPEP---FRANRSGCLDAC 60 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISS 191 + P++ + Y E + I+ + G+ + P R + Sbjct: 61 ESGPVLAVYPDGVFYTVRNREEVARIVSEHLVGGKVVSDLAIPDPPRRGA 110 >gi|159030120|emb|CAO91012.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 99 Score = 42.4 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V VC + C+++G +L+ + + + CQG C +P V Sbjct: 5 QKRFVMVCQHSSCLVQGASELLLAWQTAALPED--------VIVMTSGCQGQCSTSPTVR 56 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176 I + Y + PE + +I++ GQ Sbjct: 57 IIPEETWYCRVKPEDVNQIVEEHLKNGQ 84 >gi|152993856|ref|YP_001359577.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1] gi|151425717|dbj|BAF73220.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1] Length = 124 Score = 42.4 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLE 166 ++L + + K + GT+ + C C P++++ G Y LT E+++ Sbjct: 35 SQQLFQHLAQSLMMKGII----GTVQPIQTGCLNRCQQGPVMLVEPGHTMYVGLTKEKID 90 Query: 167 EIIDAFSTG 175 IID G Sbjct: 91 RIIDEHIIG 99 >gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 613 Score = 42.4 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156 C + G +K+ + + + + G C G C N P+V + G+ Sbjct: 25 SCGIAAGAQKVYDTFKTALEGLAVELTFSG--------CMGMCYNEPLVEVRSLSGGRYI 76 Query: 157 YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191 Y + PE++ I+ G + DRI + Sbjct: 77 YGKVQPEQVARIVQEHIQGGTPIMDWVVYSDRIKT 111 >gi|53803626|ref|YP_114709.1| hypothetical protein MCA2292 [Methylococcus capsulatus str. Bath] gi|53757387|gb|AAU91678.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 107 Score = 42.4 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 10/89 (11%) Query: 93 RAHVQVCGTTPCMLRG-CEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148 R H+ VC C G + L + K + V C C + P Sbjct: 5 RRHLLVCTGPRCTTNGESQALFDSLGEKFRAAGIDQGEL----RVKRTRVSCFATCKSGP 60 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175 +V I Y D+T L+ II G Sbjct: 61 LVCIQPDGVWYYDVTEANLDRIIREHLVG 89 >gi|312880509|ref|ZP_07740309.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260] gi|310783800|gb|EFQ24198.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260] Length = 123 Score = 42.4 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--- 148 + V V T + G +++ ++ ++ +H ++ E C G C N P Sbjct: 27 DKCRVIVGLGTCGIAAGGRGVMQAVLEELQRRNIH-----DVAVETTGCAGMCQNEPLLD 81 Query: 149 MVMIGKD--TYEDLTPERLEEIIDAFSTG 175 +V G++ TY +TP + II+ G Sbjct: 82 VVRPGEERVTYGRVTPGDVPRIIEEHLLG 110 >gi|15612930|ref|NP_241233.1| hypothetical protein BH0367 [Bacillus halodurans C-125] gi|10172980|dbj|BAB04086.1| BH0367 [Bacillus halodurans C-125] Length = 129 Score = 42.4 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 16/97 (16%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKP-LHRNSDGTLSWEEVECQGACVNA 147 T+ HV +C + C G E+L R +I P +H + C G C + Sbjct: 9 TKHHVLICNGSSCNKAGAEQLTRSIRAEIMAKGLDPIIHTTR----TL----CNGRCQDK 60 Query: 148 PMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V+I Y++++ E +D+ +G+ + Sbjct: 61 -CVLITYPSGHWYKEMSSEDAPRFVDSLLSGRRVEEK 96 >gi|158421927|ref|YP_001523219.1| ferredoxin [Azorhizobium caulinodans ORS 571] gi|158328816|dbj|BAF86301.1| ferredoxin [Azorhizobium caulinodans ORS 571] Length = 117 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C G + L E +I + C G C P++++ Y+ Sbjct: 35 SCGAAGAQPLWERLGKQI-----EATGQRDIVMTATGCMGFCQAGPIMVVYPEGVWYQPR 89 Query: 161 TPERLEEII 169 TPE ++EI+ Sbjct: 90 TPEDVDEIV 98 >gi|294338751|emb|CAZ87083.1| putative ferredoxin / thioredoxin [Thiomonas sp. 3As] Length = 115 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + H+ C C G E E C++ K L G + C C Sbjct: 5 KHHIFFCLNQRDASATRPCCAASGAEAAFEHCKSA--VKTLGLAGAGKVRVNRAGCLDRC 62 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+ ++ Y + +++I+ + Sbjct: 63 EEGPVCVVYPEGVWYTYVDQSDIDDIVQS 91 >gi|37522134|ref|NP_925511.1| hypothetical protein gll2565 [Gloeobacter violaceus PCC 7421] gi|35213134|dbj|BAC90506.1| gll2565 [Gloeobacter violaceus PCC 7421] Length = 199 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 12/84 (14%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGAC 144 SP + V VC ++ C RG KLI + +D + C C Sbjct: 111 SPTLPKTRVLVCESSDCCKRGARKLIRNLEEAVERYGL------AD-RVQIRTTGCMKHC 163 Query: 145 VNAPMVMI--GKDTYEDLTPERLE 166 P +MI K + + P + + Sbjct: 164 KQGPNLMITPAKTRHTYVDPAQAQ 187 >gi|296134795|ref|YP_003642037.1| Sucraseferredoxin family protein [Thiomonas intermedia K12] gi|295794917|gb|ADG29707.1| Sucraseferredoxin family protein [Thiomonas intermedia K12] Length = 115 Score = 42.0 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 93 RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + H+ C C G E E C++ K L G + C C Sbjct: 5 KHHIFFCLNQRDASAARPCCAASGAEAAFEHCKSA--VKTLGLAGAGKVRVNRAGCLDRC 62 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+ ++ Y + +++I+ + Sbjct: 63 EEGPVCVVYPEGVWYTYVDQSDIDDIVQS 91 >gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 633 Score = 42.0 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 89 PVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 P G + +V + C + G + + P ++ + C G C Sbjct: 23 PEGIKVNVGM---ASCGIAAGAQASYNKASQEYSGNPG-------VTISQTGCIGFCEME 72 Query: 148 PMVMIGKD-----TYEDLTPERLEEIIDAFSTGQ 176 P+V I Y +T +++ E I + G+ Sbjct: 73 PLVEIMSKDKARIIYHHMTEDKIIEAISGYMNGE 106 >gi|116749278|ref|YP_845965.1| hypothetical protein Sfum_1845 [Syntrophobacter fumaroxidans MPOB] gi|116698342|gb|ABK17530.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length = 87 Score = 42.0 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + +C + C RG + I++ + G ++ + C+G C + P + + + Sbjct: 10 LAICMGSSCFSRGNKHNIKIIKEY--IDRHGL--CGRVALKGHLCEGLCKDGPNITLNGE 65 Query: 156 TYEDLTPERLEEIIDA 171 + + + +++ Sbjct: 66 VFHSIDSASINVLLEE 81 >gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] Length = 619 Score = 42.0 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 11/97 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + V T G +++ V R +I D + EV C G C P++ Sbjct: 19 DKTVIAVGSATCGRSAGAQEISSVLREEIA----EAGLD--VEIIEVGCIGLCYLEPIIT 72 Query: 152 IGK-----DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183 I K Y +T + ++++ + G Sbjct: 73 IIKPGHPAIFYGQVTKKLAKQLVTEYLQGNNPLPEHA 109 >gi|193214739|ref|YP_001995938.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110] gi|193088216|gb|ACF13491.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110] Length = 102 Score = 42.0 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 16/99 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ +C G TP C + +L++ +++ + C Sbjct: 4 PKHHLLICASFRAGGTPQGICYKKESLQLMQYLEDELS-DRGMT----DVMISTTGCLNV 58 Query: 144 CVNAPMVMI--GKDTYEDL-TPERLEEIIDAFSTGQGDT 179 C P++++ Y + E ++EI+DA GQ Sbjct: 59 CERGPIIVVYPEGYWYGQIENEEMIDEILDALEEGQAKE 97 >gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] Length = 584 Score = 42.0 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 11/74 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157 C + G +K+ + N D +++ C G C P+V +I + +Y Sbjct: 9 SCGIAAGAKKVKDKLEAI--IDENKLNVDVSIT----GCIGMCFYEPIVDVIDDNGVFSY 62 Query: 158 EDLTPERLEEIIDA 171 ++TPE ++EI++ Sbjct: 63 GNVTPELVQEIVEK 76 >gi|116748456|ref|YP_845143.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB] gi|116697520|gb|ABK16708.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB] Length = 106 Score = 42.0 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 22/101 (21%) Query: 94 AHVQVC---GTTP----CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143 H+ VC T C+ + +LI ++ C Sbjct: 6 HHILVCASFRGTEAKGKCIKKESLQLISYLEEELDDRGINA---------MVSSTGCLKL 56 Query: 144 CVNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQGDTIR 181 C P++++ Y +T E ++EI+DA G+ R Sbjct: 57 CEQGPIMVVYPQGYWYRSVTDENAVDEILDALEEGKPAQSR 97 >gi|255556610|ref|XP_002519339.1| soluble diacylglycerol acyltransferase [Ricinus communis] gi|223541654|gb|EEF43203.1| soluble diacylglycerol acyltransferase [Ricinus communis] Length = 332 Score = 42.0 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 9/71 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 ++VC C G L+E + + + +C G C + P V + Sbjct: 239 RIEVCMGNKCKKSGGAALLEEFQRVLGVEAA---------VVGCKCMGNCRDGPNVRVRN 289 Query: 155 DTYEDLTPERL 165 + T + + Sbjct: 290 SVQDRNTDDSV 300 >gi|150025827|ref|YP_001296653.1| ferredoxin [Flavobacterium psychrophilum JIP02/86] gi|149772368|emb|CAL43848.1| Probable ferredoxin [Flavobacterium psychrophilum JIP02/86] Length = 83 Score = 42.0 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 8/83 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150 + + +C + C +++ + ++ I + LH+ + ++EC G C AP+V Sbjct: 7 PKKALFICNGSKC--GKHKEIKKQFKSSIKEGGLHKT----IEIFKIECSGRCKYAPIVY 60 Query: 151 -MIGKDTYEDLTPERLEEIIDAF 172 + YE++ E+ ++II+ Sbjct: 61 AQPQNNWYENVDLEKAKKIIEKM 83 >gi|72548103|ref|XP_843339.1| hypothetical protein [Leishmania major strain Friedlin] gi|323363855|emb|CBZ12861.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 919 Score = 42.0 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 23/127 (18%) Query: 34 PPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91 P Q A + L E +EG V AA V IAT + +QL Sbjct: 502 PSKMVQGAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK--- 547 Query: 92 TRAHV-----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV 145 R + VC T +RG E+LI + Q +D L W +C C Sbjct: 548 NRVLLLEAVQSVCQTLGAAVRGSEELISALLAPLGQLWSQTPNDSPLLWSLFDCMATVCA 607 Query: 146 -NAPMVM 151 P + Sbjct: 608 TLGPAMQ 614 >gi|309389875|gb|ADO77755.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Halanaerobium praevalens DSM 2228] Length = 124 Score = 42.0 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 GTRA + V T + G ++++ ++ ++ D + + C G C P++ Sbjct: 24 GTRAEIIVGMGTCGIAAGAREILKAVLAEVEKR------DLDVRVTQTGCIGMCEKEPLM 77 Query: 151 MI-----GKDTYEDLTPERLEEII-DAFSTGQ 176 + + TY +L P +++II + GQ Sbjct: 78 DVKLPGKERITYGNLNPADVQKIITEHLVNGQ 109 >gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 645 Score = 42.0 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 V C T C G + +I+ + I + L + + C G C P++++ Sbjct: 32 YQVLCCTGTGCSSSGSKSVIKALNHHIKSQGLQD----RVRVYKTGCFGFCKMGPILLVH 87 Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQ 176 G+ Y ++ + E+++ F GQ Sbjct: 88 PGQVFYCLVSEKDTEDLVVQHFKRGQ 113 >gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 598 Score = 42.0 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 33/93 (35%), Gaps = 10/93 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 + +++ T + G + L + + ++ R + ++ C G C Sbjct: 15 YQKSENEKTLIKISMATCGITAGADTLYDFFKEEL-----EREGNASIKLVSTGCMGLCH 69 Query: 146 NAPMVMI-----GKDTYEDLTPERLEEIIDAFS 173 + P + + + + ++ + E+I+ Sbjct: 70 SEPTIEVTIPGQQPEIFGNVDLPKAEKILKDIK 102 >gi|75907569|ref|YP_321865.1| hypothetical protein Ava_1346 [Anabaena variabilis ATCC 29413] gi|75701294|gb|ABA20970.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 109 Score = 42.0 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P R V+VC C +G ++++ ++ C G C N Sbjct: 13 TEPSTPR-CVRVCQHRTCKKQGAKEVLRAFAVLPVVD---------VTVTGSGCLGQCGN 62 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 PMV+I Y + P + +++ G Sbjct: 63 GPMVLILPDMVWYSGIQPHEVPLLVEQHLLG 93 >gi|148907665|gb|ABR16961.1| unknown [Picea sitchensis] Length = 353 Score = 42.0 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 24/92 (26%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 ++VC C G E L+E + + + +C G C NAP Sbjct: 258 VIKVCMGGKCKKSGSEMLLEALEERISKLGLGCEVEAVG---------CKCMGKCRNAPN 308 Query: 150 VMIG----------KDTYEDLTPERLEEIIDA 171 V + + + + ++ I+ Sbjct: 309 VRVQTEEDGFHGGKGEVHMGVDIGDVDLILAQ 340 >gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 589 Score = 42.0 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM-----IGKDT 156 C + G +++ ++ + ++ C G C P+V +G Sbjct: 12 SCGVAAGAQEVYLALEQYLNANS------RPVILKKTACIGMCFEEPIVQFVGSELGSIH 65 Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179 PE + I++ + G+ Sbjct: 66 IGKANPETITHILEDYIAGKTPA 88 >gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 600 Score = 42.0 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V +C C G K++E + +I Q+ L +D + + V C G C P+V + Sbjct: 11 VVCICAG-GCTSSGSLKILERFQTEIEQRGL---ADKIV-VKPVGCHGFCEQGPIVTVEP 65 Query: 155 D--TYEDLTPERLEEIIDAFSTG 175 + Y ++ + ++ + + G Sbjct: 66 EKLFYTRVSENDVPALVVSIAKG 88 >gi|198282357|ref|YP_002218678.1| putative ferredoxin 2Fe-2S protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246878|gb|ACH82471.1| putative ferredoxin 2Fe-2S protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 108 Score = 42.0 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 22/109 (20%) Query: 93 RAHVQVC-----GTTPCMLRGCEKLIEVCR------NKIHQKPLHRNSDGTLSWEEVECQ 141 R H+ C + C G ++ + ++ + NS G C Sbjct: 9 RHHIFFCTNKRNDGSSCANHGSVASHQLAKVIISNLEQLGITNVMVNSSG--------CL 60 Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188 G C + P+++I Y + + EII T +G ++ + Sbjct: 61 GRCKDGPVLVIYPDGIWYTFGVEDDVREIIQEHIT-RGHIVKRLRLNGQ 108 >gi|70729607|ref|YP_259346.1| hypothetical protein PFL_2239 [Pseudomonas fluorescens Pf-5] gi|68343906|gb|AAY91512.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 250 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P R V +C C+ RG L + R ++ + G L CQ C Sbjct: 142 SRVPPHAR-QVFLCTGPRCVRRGALALWKTLRRELLRLEHMETPGGVL-LTRTACQFPCN 199 Query: 146 NAPMVMI 152 P++ + Sbjct: 200 LGPVLTV 206 >gi|54298699|ref|YP_125068.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris] gi|148358555|ref|YP_001249762.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby] gi|53752484|emb|CAH13916.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris] gi|148280328|gb|ABQ54416.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby] Length = 105 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 11/96 (11%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C G E+ + ++K+ + G + + C G C + P Sbjct: 8 HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKVRVSKSGCLGRCSSGP 65 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++I Y + E +E+II + G+ + P Sbjct: 66 CIVIYPEGVWYTYSSFEDIEQII-KYHLIDGEIVEP 100 >gi|296139316|ref|YP_003646559.1| hypothetical protein Tpau_1599 [Tsukamurella paurometabola DSM 20162] gi|296027450|gb|ADG78220.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length = 246 Score = 42.0 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R V VC C RG L ++ ++ L D ++ CQ C +AP+V + Sbjct: 136 RHQVLVCRGPRCSARGAAALSAALGAELRRRALDD-DDVLMTV--TGCQFPCNHAPVVTV 192 Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185 Y +T E + +++ G+ R P+ Sbjct: 193 QPDDAWYGGITVEDVPALVEDHLVDGRRLAHRLLPR 228 >gi|220935951|ref|YP_002514850.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7] gi|219997261|gb|ACL73863.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7] Length = 101 Score = 42.0 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 9/84 (10%) Query: 95 HVQVC-----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H+ C C G ++ + + K L G + C C P+ Sbjct: 7 HIFFCTNCREDGNCCENYGASQIRAYAKQR--AKELGITGKGGVRVNTAGCLDRCNEGPV 64 Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171 ++ Y + + +EEI+ Sbjct: 65 AVVYPEGVWYTYVDEQDVEEILQE 88 >gi|289522155|ref|ZP_06439009.1| NADP-reducing hydrogenase, subunit B [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503991|gb|EFD25155.1| NADP-reducing hydrogenase, subunit B [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 123 Score = 41.6 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 16/89 (17%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNA 147 G + + V T + G +++ ++ K ++ E C G C Sbjct: 26 GGKKKIIVGMGTCGIAAGAREVLTAILTELDKRGIKD--------VAVETTGCIGMCQYE 77 Query: 148 PMVMI-----GKDTYEDLTPERLEEIIDA 171 P+V I + TY ++ PE + II Sbjct: 78 PLVDIIRPGEPRVTYGNIKPEDVSRIIAE 106 >gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 536 Score = 41.6 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + VC C+ G +K++E + D + V C G C +V I Sbjct: 22 TISVCVAAGCLALGSDKVLEELKRIF--------PDRI--VKGVGCLGLCSRGALVRIEP 71 Query: 155 D--TYEDLTPERLEEIID 170 + E P+ ++EI++ Sbjct: 72 EGFVIEHARPDNIDEIVN 89 >gi|291615275|ref|YP_003525432.1| ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus ES-1] gi|291585387|gb|ADE13045.1| putative ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus ES-1] Length = 103 Score = 41.6 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 24/109 (22%) Query: 79 ATFYT---QF--QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSD 130 + Y F P G C + + ++K + Sbjct: 1 MSHYDKHVFFCVNQRPAGE----DCCNNHD-----AQAARDYVKDKVKQLGIS----TEK 47 Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAF-STGQ 176 + C G C P++++ Y + L+EII+ G+ Sbjct: 48 HQVRINSAGCLGRCELGPVLVVYPDAVWYTYVDRSDLDEIIEEHIRNGR 96 >gi|219116606|ref|XP_002179098.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409865|gb|EEC49796.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 294 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 15/100 (15%) Query: 88 SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 SP+ R +QVC + C+ G + + + + + EE C C Sbjct: 27 SPIPERVTLQVCLSPGCVADGAARTMHLLQAL---------APAHFVIEEGGCNSLCGYG 77 Query: 148 PMVMIGKDT---YEDLTPERLEEIIDAFSTGQGDTIRPGP 184 P+V I + Y+ + E+ EI+ +S + GP Sbjct: 78 PVV-ISPEASNKYKKVVEEKALEIL--YSHNNDPNVPAGP 114 >gi|87310147|ref|ZP_01092279.1| ferredoxin, 2Fe-2S [Blastopirellula marina DSM 3645] gi|87287137|gb|EAQ79039.1| ferredoxin, 2Fe-2S [Blastopirellula marina DSM 3645] Length = 131 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 14/88 (15%) Query: 94 AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ +C C +G L + + ++ + L G + C C Sbjct: 6 HHIFICENRRAAGHPRGSCDEQGHGDLKDALKKELKRHGLK----GEVRANSAGCLDQCE 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P+++I Y +T + + I++ Sbjct: 62 CGPVLVIYPQAIWYGAVTLQDVPRIVEE 89 >gi|145220156|ref|YP_001130865.1| ferredoxin, 2Fe-2S [Prosthecochloris vibrioformis DSM 265] gi|145206320|gb|ABP37363.1| ferredoxin, 2Fe-2S [Chlorobium phaeovibrioides DSM 265] Length = 102 Score = 41.6 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 16/97 (16%) Query: 92 TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + H+ VC P C + LI +++ + + ++ C Sbjct: 4 PKHHIFVCASFRAQGAPQGICHKKESLSLIPYFESELADRGMS-----DVAVSATACLNL 58 Query: 144 CVNAPMVMI--GKDTYEDL-TPERLEEIIDAFSTGQG 177 C P+V+I Y ++ + E+++EI+DA G+ Sbjct: 59 CEKGPIVVIYPENFWYGEVNSEEKVDEILDALEEGEA 95 >gi|297603543|ref|NP_001054236.2| Os04g0674100 [Oryza sativa Japonica Group] gi|255675872|dbj|BAF16150.2| Os04g0674100 [Oryza sativa Japonica Group] Length = 238 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 15/88 (17%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM- 149 G ++VC C +G +++ + + C G C P Sbjct: 29 GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNF 79 Query: 150 -VMIGK---DTYEDL-TPERLEEIIDAF 172 + + + T R ++++ Sbjct: 80 GASVSGGGAAVFGHVGTAARAAQLLEHL 107 >gi|167950510|ref|ZP_02537584.1| Ferredoxin-like protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 110 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 93 RAHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R H+ C PC R + ++ + L G + C C + Sbjct: 5 RHHLFFCTNQRDDGHPCCGRFNAAGQCGYLKQRVKELELELAGPGGVRVNIAGCLDRCEH 64 Query: 147 APMVMIGKDT--YEDLTPERLEEIIDA 171 P+++I + Y + + L+EI+ Sbjct: 65 GPVLVIYPEAVWYTYVDRDDLDEILQR 91 >gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 598 Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+HV VCG T C K+I+ + L + + C G C P+V++ Sbjct: 5 RSHVLVCGGTGCASSDSFKMIDEFDEAFKKYGLE----KEVKLVKTGCFGLCEAGPIVIV 60 Query: 153 --GKDTYEDLTPERLEEIIDA 171 Y + ++ I + Sbjct: 61 YPEGAFYSHVKLSDIDRITEE 81 >gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479] gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479] Length = 573 Score = 41.6 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 12/96 (12%) Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-F 172 R ++ ++ L D +S + C G C P++++ Y + + + EI++ Sbjct: 4 LREELKKQGL----DEEVSVVQTGCHGLCALGPIMIVYPDATFYAMVKEDDIPEIVEEHL 59 Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 G+ P ++ + G+ SL D + K+ Sbjct: 60 LKGR-----PVQRLLYDETVTPAGVKSLGDTDFYKK 90 >gi|298708046|emb|CBJ30399.1| conserved unknown protein [Ectocarpus siliculosus] Length = 274 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ V VC T C G ++ R G + E CQG C P ++ Sbjct: 41 TKGTVHVCTNTSCRKAGSRWTVDTFRAFA--------PPGDIKVLETGCQGRCGLGPNIL 92 Query: 152 --IGKDTYEDL-TPERLEEIID 170 ++ Y + P + II+ Sbjct: 93 TRPSEEVYNGVAQPATVAAIIE 114 >gi|172035393|ref|YP_001801894.1| hypothetical protein cce_0477 [Cyanothece sp. ATCC 51142] gi|171696847|gb|ACB49828.1| hypothetical protein cce_0477 [Cyanothece sp. ATCC 51142] Length = 185 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152 + VC + C RG + + C+ + SD + + C C P ++M Sbjct: 107 KILVCQKSSCWKRGGKSV---CQQLEQELEQQGLSD-RVKIKLTGCLKQCKKGPNVVIMP 162 Query: 153 GKDTYEDLTPERLEEIIDA 171 K Y + P ++++++ Sbjct: 163 HKARYCQVQPGEVDKLVNK 181 >gi|124022573|ref|YP_001016880.1| ferredoxin [Prochlorococcus marinus str. MIT 9303] gi|123962859|gb|ABM77615.1| Ferredoxin [Prochlorococcus marinus str. MIT 9303] Length = 139 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 12/108 (11%) Query: 94 AHVQVCGT----TPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLSWEEVECQGACVNA 147 H+ +C T C + I Q L +G + +V+C C + Sbjct: 31 HHLLLCATPNKAACCSAAVGNASWANLKKLIKQLDLENIDRPEGVVLRSKVDCLRICNDG 90 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQIDRI 189 P+++I Y +TPER+E I+ G + IR PQ R Sbjct: 91 PILLIWPDGIWYGGVTPERIESIVREHVLGGQPIEAWIIRRTPQQQRH 138 >gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528] gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528] Length = 599 Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V +C T C+ +G ++ E + + L N++ + + C G C P++ Sbjct: 3 DKKTVNICCGTGCLAKGSMEVYEEMKAQ--IAKLGANAEVNVKLKATGCDGLCEKGPVLK 60 Query: 152 I--GKDTY 157 I Y Sbjct: 61 IYPDDIAY 68 >gi|300022058|ref|YP_003754669.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523879|gb|ADJ22348.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 386 Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 24/112 (21%) Query: 97 QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156 +VC PC L G E+ + C C AP + Sbjct: 29 RVCVGLPCALAGAEQFCHSLVESGLVRSDEIT--------RETCLAQCWRAPAIGRDGRI 80 Query: 157 YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208 Y +G +T GP +GG L +K+R Sbjct: 81 Y----------------SGACETSDFGPAESFEQYCASGGYGVLKSCLAKRR 116 >gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 616 Score = 41.6 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + V T + G + + R + + + R+ ++ E C G C + P V + + Sbjct: 27 TILVSMGTCGLAAGARPVYDALRAEAEIQGMARS----VAVVETGCMGLCHSEPSVELME 82 Query: 155 D------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 Y +T ++ +I+ A G + +IDR AP Sbjct: 83 HATGRRLIYGRVTGKQAAQIVAAGMAGAEGVV----EIDRSWYAPED 125 >gi|282883178|ref|ZP_06291777.1| putative NADH-quinone oxidoreductase chain f [Peptoniphilus lacrimalis 315-B] gi|300814451|ref|ZP_07094713.1| hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281296990|gb|EFA89487.1| putative NADH-quinone oxidoreductase chain f [Peptoniphilus lacrimalis 315-B] gi|300511421|gb|EFK38659.1| hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 91 Score = 41.6 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSDGTLSWEEVECQGAC------V 145 V +C + C L G + + + + L +E + G C Sbjct: 2 KVTICMCSKCTLMGANAIFDAVEYLHESLCAPGSEFCNAQNLEFEASDSLGICKENTDSE 61 Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169 +P+V I Y + T + + EII Sbjct: 62 ISPVVAIDDTIYTNATAQEISEII 85 >gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 619 Score = 41.6 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 TRA V V T + G +K+++ + + + L + + C G C P V Sbjct: 20 TRARVVVGLGTCGIAAGGDKVMKALQAIVAGRVLD------IDVDFTSCIGMCYAEPTVE 73 Query: 152 IG-----KDTYEDLTPERLEEIIDAFSTGQGDT 179 + Y D+ PE + +ID G+ Sbjct: 74 VALPGEASVIYGDVNPENVIRLIDEHVIGKKPV 106 >gi|159903758|ref|YP_001551102.1| ferredoxin [Prochlorococcus marinus str. MIT 9211] gi|159888934|gb|ABX09148.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211] Length = 114 Score = 41.6 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 94 AHVQVC----GTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLSWEEVECQGACVNA 147 H+ +C C + + + L +G + +V+C C Sbjct: 7 HHLLLCASPKNALCCKPENGINSWKRLKKILKDLNLEDPQRPEGIVLRSKVDCLRVCKEG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+++I YE +TP+ +E+II+ G Sbjct: 67 PILLIWPDGIWYEKVTPDLIEQIINQHVIG 96 >gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 620 Score = 41.6 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-- 153 V+VC T C+ G + + E + + + +S C G C P+V+ G Sbjct: 26 VRVCAGTGCLAGGSQGVYEALVEE--ARRIGLDSPVKFQARCSGCHGFCEEGPLVVCGMG 83 Query: 154 --KDTYEDLTPERLEEIIDAFSTGQ 176 + Y + E EI+ A + + Sbjct: 84 DSEVLYRKVRREDALEILLALADDR 108 >gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 623 Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGT---LSWEEVECQGACVN 146 + V VC T C+ G ++ + I++K L D + ++ C G C Sbjct: 23 QKKKVLVCAGTGCVAGGSLEIYNRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEM 82 Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171 P+V I + Y + E EEI++ Sbjct: 83 GPLVRIEPENYLYLRVQIEDCEEIVNK 109 >gi|16329813|ref|NP_440541.1| hypothetical protein sll1584 [Synechocystis sp. PCC 6803] gi|1652298|dbj|BAA17221.1| sll1584 [Synechocystis sp. PCC 6803] Length = 134 Score = 41.6 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%) Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACV 145 R C T C + + ++ + DG + + C C Sbjct: 26 QRHLFLCCDQTKPKCCSKEDSLATWDYLKKRLPELGLDCTQSSRDGNIFRTKANCLRVCQ 85 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P++++ Y ++TP +E+I+ Sbjct: 86 QGPILLVYPEGIWYRNVTPTVMEKILQE 113 >gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] Length = 625 Score = 41.6 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 9/86 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRN------KIHQKPLHRNSDGT-LSWEEVECQGACVNA 147 + VCG T C+ G +K+ + + + + G + ++ C G C Sbjct: 26 KILVCGGTGCLAGGSDKIFDRFSELTAGMDHVEVRIGAEIAHGEHVGVKKSGCHGFCEMG 85 Query: 148 PMVMIG--KDTYEDLTPERLEEIIDA 171 P+V I Y + E EEI + Sbjct: 86 PLVRIEPYNYLYLKVKLEDCEEIFEK 111 >gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 624 Score = 41.3 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 17/93 (18%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGTLSWEEVEC 140 + + VC T C+ G ++ + ++ ++P D ++ ++ C Sbjct: 22 QKKKILVCAGTGCVSSGALEIFDRLAELISQNGLDCQVELEKEPH----DKSIGMKKSGC 77 Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 G C P++ I Y + + EEI+D Sbjct: 78 HGFCEMGPLIRIEPEGYLYTKVKLQDCEEIVDR 110 >gi|302391063|ref|YP_003826883.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Acetohalobium arabaticum DSM 5501] gi|302203140|gb|ADL11818.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Acetohalobium arabaticum DSM 5501] Length = 121 Score = 41.3 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 11/91 (12%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + + V V T + G ++++ ++I+++ D + + C G Sbjct: 17 DMKTRKSEGKPKVIVGMGTCGIAAGAREIMQALLDEINKR------DLDVIVTQTGCIGM 70 Query: 144 CVNAPMVMI-----GKDTYEDLTPERLEEII 169 C P+V + + TY +T E ++II Sbjct: 71 CEKEPLVDVKLPGKDRITYGGVTEEDAQKII 101 >gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 623 Score = 41.3 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGT---LSWEEVECQGACVN 146 + V VC T C+ G ++ + I++K L D + ++ C G C Sbjct: 23 QKKKVLVCAGTGCVAGGALEIYNRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEM 82 Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171 P+V I + Y + E EEI+ Sbjct: 83 GPLVRIEPENYLYLRVQIEDCEEIVAK 109 >gi|218247216|ref|YP_002372587.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 8801] gi|257061450|ref|YP_003139338.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] gi|218167694|gb|ACK66431.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 8801] gi|256591616|gb|ACV02503.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802] Length = 97 Score = 41.3 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 11/99 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R V +C + C + G K+ + P D + CQG C + P V Sbjct: 4 QRRSVMICQHSACKIEGAAKVFLAF--HLANLP----PD--VVIMSTGCQGQCSSGPTVR 55 Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 I + Y + P+ + I++ GQ + P+I Sbjct: 56 ILPEETWYCRVKPQDVTLIVEQHLRGGQPVKEKLHPRIH 94 >gi|125972861|ref|YP_001036771.1| ferredoxin [Clostridium thermocellum ATCC 27405] gi|256005731|ref|ZP_05430686.1| NADP-reducing hydrogenase, subunit B [Clostridium thermocellum DSM 2360] gi|281417060|ref|ZP_06248080.1| ferredoxin [Clostridium thermocellum JW20] gi|125713086|gb|ABN51578.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Clostridium thermocellum ATCC 27405] gi|255990304|gb|EEU00431.1| NADP-reducing hydrogenase, subunit B [Clostridium thermocellum DSM 2360] gi|281408462|gb|EFB38720.1| ferredoxin [Clostridium thermocellum JW20] gi|316940901|gb|ADU74935.1| ferredoxin [Clostridium thermocellum DSM 1313] Length = 122 Score = 41.3 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 Q L V V T + G ++ +++++ L ++ C G Sbjct: 16 DQINLRTSNHDIRVVVGMATCGIAAGARPVMNAFVEELNKRNLT-----NVAVTMTGCIG 70 Query: 143 ACVNAPMV-MIGKD----TYEDLTPERLEEIIDA 171 C P+V +I KD TY +TPE++ ++ Sbjct: 71 MCKLEPIVEVIDKDGSKVTYVKMTPEKVARVVAE 104 >gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 579 Score = 41.3 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEI 168 ++++ + Q+ + + C G C P+V++ G+ Y+++ P+ ++EI Sbjct: 2 EVLKAFEEAL-QRVGEVEATAKFT----GCHGFCERGPIVIVSPGEIFYQNVKPKDVDEI 56 Query: 169 IDA 171 + Sbjct: 57 VQR 59 >gi|319761130|ref|YP_004125067.1| ferredoxin-like protein [Alicycliphilus denitrificans BC] gi|330822988|ref|YP_004386291.1| ferredoxin-like protein [Alicycliphilus denitrificans K601] gi|317115691|gb|ADU98179.1| ferredoxin-like protein [Alicycliphilus denitrificans BC] gi|329308360|gb|AEB82775.1| ferredoxin-like protein [Alicycliphilus denitrificans K601] Length = 113 Score = 41.3 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 H+ C C G ++ E C+ + K G + + C C P Sbjct: 12 HIFFCLNERSNGENCCAQHGAQQAFERCK--MLVKQQGLMGPGKVRVNKAGCMDRCAGGP 69 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTG-QGDTIRPGPQIDR 188 + ++ Y + ++EI+++ G + +R P++ R Sbjct: 70 IAVVYPEGVWYTYVDEADIDEIVESHLKNGVVVERLRTPPELGR 113 >gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] Length = 600 Score = 41.3 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157 C + G + E + ++ ++ L+ + + V C G C P+V +I +D TY Sbjct: 13 SCGIAAGARETYEAIKAELEKRNLN------IKLKIVGCVGMCYREPLVDIITEDEIITY 66 Query: 158 EDLTPERLEEIIDA 171 + P+++ II+ Sbjct: 67 GHVDPKKVPRIIEE 80 >gi|300114570|ref|YP_003761145.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113] gi|299540507|gb|ADJ28824.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113] Length = 104 Score = 41.3 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 11/93 (11%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R HV C C + + K K L + C C Sbjct: 7 RYHVFFCTNQRDDGRPCCQNHDALAIRNYAKEK--VKALGLARRRQVRINTAGCLNRCAQ 64 Query: 147 APMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 P +++ Y T + ++EII + GQ Sbjct: 65 GPAMVVYPEGTWYTYTTRKDIDEIITEHLMNGQ 97 >gi|307611585|emb|CBX01267.1| hypothetical protein LPW_29651 [Legionella pneumophila 130b] Length = 105 Score = 41.3 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C G E+ + ++K+ + G + + C G C + P Sbjct: 8 HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKIRVSKSGCLGRCSSGP 65 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++I Y + E +E+II + G + P Sbjct: 66 CIVIYPEGVWYTYSSFEDIEQII-KYHLIDGKIVAP 100 >gi|320107078|ref|YP_004182668.1| Sucraseferredoxin family protein [Terriglobus saanensis SP1PR4] gi|319925599|gb|ADV82674.1| Sucraseferredoxin family protein [Terriglobus saanensis SP1PR4] Length = 119 Score = 41.3 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%) Query: 95 HVQVCGTT--------PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143 HV +C C G +KL + ++ I K + E C Sbjct: 7 HVFICTNERDESAARPSCRNEGAKKLKDAFKDAIKDAGLKH-------QIRANESGCLDQ 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C + P+V++ Y + P+ +EEI+ + G Sbjct: 60 CEHGPVVVVYPDAVWYGFVRPKDVEEIVQSHLVG 93 >gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] Length = 599 Score = 41.3 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 11/74 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157 C + G + E + ++ ++ L + + V C G C P+V +I +D TY Sbjct: 13 SCGIAAGARETYEAIKAELERRNLD------VKLKIVGCVGMCYREPLVDIITEDEIITY 66 Query: 158 EDLTPERLEEIIDA 171 + P+++ II+ Sbjct: 67 GHVDPKKVPRIIEE 80 >gi|225181916|ref|ZP_03735350.1| ferredoxin, 2Fe-2S [Dethiobacter alkaliphilus AHT 1] gi|225167356|gb|EEG76173.1| ferredoxin, 2Fe-2S [Dethiobacter alkaliphilus AHT 1] Length = 104 Score = 41.3 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 14/82 (17%) Query: 94 AHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 H+ VC ++ C + ++E +I+ + L G + C G C Sbjct: 6 HHIFVCTSSRPNGQQKGFCHSKDAFAIMETLLEEINDRGLG----GEVFVTNTGCLGFCE 61 Query: 146 NAPMVMI--GKDTYEDLTPERL 165 P+V++ Y ++P+ + Sbjct: 62 KGPIVIVYPENIWYFSVSPDNV 83 >gi|302761634|ref|XP_002964239.1| hypothetical protein SELMODRAFT_406024 [Selaginella moellendorffii] gi|300167968|gb|EFJ34572.1| hypothetical protein SELMODRAFT_406024 [Selaginella moellendorffii] Length = 229 Score = 41.3 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 PV R V+VC C G ++++ + KI S T +C G C P Sbjct: 130 PVCAR--VEVCTGGKCRKAGSQQVLAAFQAKISSSSSPSLSSAT----SCKCMGMCGQGP 183 Query: 149 MVMIGKD------TYEDLTPERLEEIIDA 171 V I + + E ++ ++ Sbjct: 184 NVRIQGAGDGAPLAFNHVGVEDVDPLLQQ 212 >gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 623 Score = 41.3 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%) Query: 86 QLSPVGTRAH--VQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLS--WEEV 138 + G + VC T C+ G K+ E ++ G + + Sbjct: 10 SVKKAGENITKRIVVCAGTGCVASGSIKVFESFIIVAKELGISVCVELKGGNIGTLLSKS 69 Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 CQG C P+V I + Y ++ + ++EI+ Sbjct: 70 GCQGFCQKGPLVNILPAEILYINVKVDDVKEILKK 104 >gi|219121272|ref|XP_002185863.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582712|gb|ACI65333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 243 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 V+VCG C G K N I+ + +S E +CQG C P V++ Sbjct: 45 KVEVCGFKDCKRAGGGK---RLENLINAIVEEKGLSDAISVEGCDCQGECGYGPNVVVDG 101 Query: 155 DTYEDL 160 ++ Sbjct: 102 KLINNV 107 >gi|218260407|ref|ZP_03475736.1| hypothetical protein PRABACTJOHN_01399 [Parabacteroides johnsonii DSM 18315] gi|218224535|gb|EEC97185.1| hypothetical protein PRABACTJOHN_01399 [Parabacteroides johnsonii DSM 18315] Length = 132 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 ++V T + G ++++ + ++ D ++ + C G C P V + Sbjct: 34 VQIRVSMATCGIAAGAKEIMNYFIEALDREK----VDALVT--QTGCMGYCYAEPTVEVT 87 Query: 153 --GKD--TYEDLTPERLEEIIDAF 172 GK+ + + +++EII + Sbjct: 88 LPGKEPLVFGHVKKAKVDEIIARY 111 >gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Moorella thermoacetica ATCC 39073] Length = 619 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148 G +A + V T + G +++ ++ ++ + C G C P Sbjct: 24 AGAKAKIVVGMGTCGIAAGAREVMNAILDE--VAKRQLTG---VTVSQTSCIGLCAQEPL 78 Query: 149 --MVMIG--KDTYEDLTPERLEEII 169 +++ G K TY + + EI+ Sbjct: 79 VDVILPGQPKVTYGKVDAAKAREIV 103 >gi|123468|sp|P22658|HOXF_RHOOP RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha gi|80659|pir||S03941 hydrogen dehydrogenase (EC 1.12.1.2) alpha chain, cytosolic - Rhodococcus sp. (fragment) Length = 37 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61 + ++ R R + +I +L Q G + + Sbjct: 4 IKAILERNGSERTR--LIDILWDVQHLYGHIPDEVL 37 >gi|38344917|emb|CAE03233.2| OSJNBa0018M05.8 [Oryza sativa Japonica Group] gi|90399197|emb|CAH68183.1| H0403D02.12 [Oryza sativa Indica Group] gi|125550199|gb|EAY96021.1| hypothetical protein OsI_17892 [Oryza sativa Indica Group] Length = 250 Score = 40.9 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 15/88 (17%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM- 149 G ++VC C +G +++ + + C G C P Sbjct: 29 GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNF 79 Query: 150 -VMIGK---DTYEDL-TPERLEEIIDAF 172 + + + T R ++++ Sbjct: 80 GASVSGGGAAVFGHVGTAARAAQLLEHL 107 >gi|37523977|ref|NP_927354.1| hypothetical protein glr4408 [Gloeobacter violaceus PCC 7421] gi|35214983|dbj|BAC92349.1| glr4408 [Gloeobacter violaceus PCC 7421] Length = 121 Score = 40.9 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 + C C G ++ ++ L SD + + C C N PM+++ + Sbjct: 8 IFACQNRTCRRDGSSAVLAALEGELACCGL---SD-QVELQATGCLSQCGNGPMLLVVQT 63 Query: 156 T------YEDLTPERLEEIIDA-FSTGQGDT 179 Y+ + PE + ++ G+ T Sbjct: 64 ATGRQIWYDRVRPEEMPLVVRRHLIEGKPVT 94 >gi|323141629|ref|ZP_08076511.1| hypothetical protein HMPREF9443_01290 [Phascolarctobacterium sp. YIT 12067] gi|322413894|gb|EFY04731.1| hypothetical protein HMPREF9443_01290 [Phascolarctobacterium sp. YIT 12067] Length = 122 Score = 40.9 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 + V T + G +++ +++++ L + ++ C G C V++ Sbjct: 26 TKIIVGMGTCGIAAGAREVMSAILQELNKRHL-----FDVQVQQTGCIGMCEKE--VLVD 78 Query: 154 -------KDTYEDLTPERLEEIIDA 171 + TY +TPE + +II Sbjct: 79 VVRPGEARITYGKVTPEDVPKIIAE 103 >gi|168704828|ref|ZP_02737105.1| hypothetical protein GobsU_35147 [Gemmata obscuriglobus UQM 2246] Length = 114 Score = 40.9 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 95 HVQVCGTTPCMLR----GCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACVNAPM 149 HV +C C G + + ++++ + L +V C C P+ Sbjct: 2 HVMLCVGDACCGAIGKDGAQAAWDALKDELKTRNLSLATGPTACYRTKVSCLRVCAGGPL 61 Query: 150 VMI--GKDTYEDLTPERLEEII-DAFSTGQGD---TIRPGPQIDRISSAPAGG 196 +++ Y ++T +R+ + + G+ P + ++ P G Sbjct: 62 LVVYPEGTWYGNMTADRIPRFVQEHLIDGKPIEEWVFARNPLPNPPTAEPVQG 114 >gi|54295549|ref|YP_127964.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens] gi|53755381|emb|CAH16877.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens] Length = 105 Score = 40.9 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C G E+ + ++K+ + G + + C G C + P Sbjct: 8 HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKIRVSKSGCLGRCSSGP 65 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 ++I Y + E +E+II + G + P Sbjct: 66 CIVIYPEGVWYTYSSFEDIEQII-RYHLIDGKIVAP 100 >gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] Length = 628 Score = 40.9 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI------HQKPLHRNSDGT--LSWEEVECQGA 143 +R + +C T C+ G ++ E R + + G + ++ C G Sbjct: 24 SRCRILICAGTGCLAGGSGEIYEKMRRLTEECPDVEVEFAPEAAHGESGVGVKKSGCHGF 83 Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 C P++ I Y ++ + E I + + +GD IR Sbjct: 84 CEMGPLMRIEPMGILYTKVSVDDCEAIFER-TIKKGDIIRH 123 >gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] Length = 633 Score = 40.9 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 15/92 (16%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI----------HQKPLHRNSD---GTLSWEEV 138 +R + +C T C+ G ++ E + H ++ G + ++ Sbjct: 24 SRCRILICAGTGCLAGGSGEIYEKMCELTAENPDVDVFFGPEIAHTEAEQKTGPVEVKKS 83 Query: 139 ECQGACVNAPMVMIG--KDTYEDLTPERLEEI 168 C G C P++ I Y + EEI Sbjct: 84 GCHGFCEMGPLMRIEPMGILYTKVQLSDCEEI 115 >gi|315651467|ref|ZP_07904490.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium saburreum DSM 3986] gi|315486287|gb|EFU76646.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium saburreum DSM 3986] Length = 389 Score = 40.9 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 14/80 (17%) Query: 14 SSFSFSEESAIWVNEVISRYPPSRCQSAVIPL--------LMRAQE----QEGWVSRAAI 61 F FS + W+ + I+R + ++ IP+ L++ Q + G R Sbjct: 200 KGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINRLIKIQRKLVQEFGREPRP-- 257 Query: 62 EVVANILDMAYIRVLEIATF 81 + VA ++ + +V EI +F Sbjct: 258 DEVAKVMGIPVSKVREIMSF 277 >gi|302871902|ref|YP_003840538.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis OB47] gi|302574761|gb|ADL42552.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis OB47] Length = 129 Score = 40.9 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G V V T + G ++ +I ++ L ++ + C G C Sbjct: 21 FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NITVVQTGCIGLCK 75 Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171 P+V + K+ TY +TPE++ I+ Sbjct: 76 YEPIVEVYEPNKEKVTYVKMTPEKVTRIVAE 106 >gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum] Length = 1059 Score = 40.9 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Query: 133 LSWEEVECQGACVNAPM--VMIGKD---TYEDLTPERLEEIIDA 171 ++ C G C N P+ V + TY +TPE +E I+ A Sbjct: 38 VTVHPTGCVGMCHNEPLLDVQVAGRSRVTYTQVTPESVEGILKA 81 >gi|312135113|ref|YP_004002451.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis OL] gi|311775164|gb|ADQ04651.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis OL] Length = 129 Score = 40.5 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G V V T + G ++ +I ++ L ++ + C G C Sbjct: 21 FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NVTVVQTGCIGLCK 75 Query: 146 NAPMVMI---GKD--TYEDLTPERLEEII-DAFSTGQ 176 P+V + K+ TY +TPE++ +++ + G+ Sbjct: 76 YEPIVEVYEPNKEKVTYVRMTPEKVVKVVTEHLVNGK 112 >gi|260446977|emb|CBG76259.1| OO_Ba0005L10-OO_Ba0081K17.10 [Oryza officinalis] Length = 254 Score = 40.5 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 15/86 (17%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G ++VC C +G +++ + + C G C P + Sbjct: 33 GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNI 83 Query: 151 MI-----GKDTYEDL-TPERLEEIID 170 G + + T R ++++ Sbjct: 84 GASVSGGGAAVFGHVGTAARAAQLLE 109 >gi|121592704|ref|YP_984600.1| ferredoxin-like protein [Acidovorax sp. JS42] gi|222109485|ref|YP_002551749.1| ferredoxin-like protein [Acidovorax ebreus TPSY] gi|120604784|gb|ABM40524.1| ferredoxin-like protein [Acidovorax sp. JS42] gi|221728929|gb|ACM31749.1| ferredoxin-like protein [Acidovorax ebreus TPSY] Length = 113 Score = 40.5 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 84 QFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +P + H+ C C G ++ + C+ + K G + + Sbjct: 1 MSDTTPQYYQRHIFFCLNERTNGENCCAHHGAQQAFDRCK--MLVKQQGLMGPGKVRVNK 58 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175 C C P+ ++ Y + ++EI+++ G Sbjct: 59 AGCLDRCAGGPIAVVYPEGTWYTYVDESDIDEIVESHLKNG 99 >gi|284929584|ref|YP_003422106.1| DNA-directed RNA polymerase subunit alpha [cyanobacterium UCYN-A] gi|284810028|gb|ADB95725.1| DNA-directed RNA polymerase subunit alpha [cyanobacterium UCYN-A] Length = 314 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 26/112 (23%) Query: 18 FSE-ESAIWVNEVISRYPPSRCQSAVIPL--LMRAQEQEGWVSRAAIEVVANILDMAYIR 74 FS ++ + V+ YP + IP+ L + + RA I VA++LD + Sbjct: 221 FSPLKNINQIETVVPEYPDEENPQSQIPIEELQLSVRAYNCLKRAQINTVADLLDYSQED 280 Query: 75 VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126 +LEI F G ++ E++IE + ++ Sbjct: 281 LLEIKNF---------GQKS--------------AEEVIEALQKRLGITLAQ 309 >gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1] gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfotomaculum reducens MI-1] Length = 659 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 13/81 (16%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 G + VC CM +G LIE N + + V C C N Sbjct: 579 KDGNGPEITVCIGEGCMKKGSISLIEKLVNL------------PVKVKGVFCLENCGNGV 626 Query: 149 MVMIGKDTYEDLTPERLEEII 169 V + + +TPE E I Sbjct: 627 SVKVNDEIL-HVTPENALESI 646 >gi|307720219|ref|YP_003891359.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294] gi|306978312|gb|ADN08347.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294] Length = 124 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C+ + L + K+ Q+ + GT+ C C P++++ G Y L Sbjct: 25 SCVTPATQDLFQYLAQKLMQEGIM----GTVQPIRTSCMNRCSAGPVMLVEPGHTMYAGL 80 Query: 161 TPERLEEIIDAFSTG 175 T E++++II G Sbjct: 81 TKEKIDKIISEHIIG 95 >gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA] gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA] gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400] Length = 591 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + +C T + G +K+ I +K + + C+G C N +V Sbjct: 2 GEAIKILICQGTGGVSAGAKKVEAEFLRVIGEKGVDATVGKRCDVIKTGCRGLCANDVLV 61 Query: 151 MI-----GKDTYEDLTPERLEEIIDA 171 I G+ TY+ + PE +E+I+ Sbjct: 62 DIVDPELGRVTYDFVLPEEVEKIVAE 87 >gi|296134041|ref|YP_003641288.1| ferredoxin [Thermincola sp. JR] gi|296032619|gb|ADG83387.1| ferredoxin [Thermincola potens JR] Length = 138 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%) Query: 86 QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 QL+P + + V T C ++ G + + ++ D V C+GAC Sbjct: 39 QLAPDSAQPRITVGMGT-CGIKAGARHVFQAFGEELK----QVGCDAV--LVPVGCKGAC 91 Query: 145 VNAPMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P+V + Y ++ PE+++ I+ + Sbjct: 92 SYEPLVEVKLPGLPTVLYGNVDPEKVKHIVRQHLMKKQPVHEW 134 >gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] Length = 586 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V + + + G K+ E +++I + ++ E+ C G C P+V Sbjct: 2 EKYKVIIGQGSCGIAAGAAKVEESFKDQI------TAKNLSIDLEKTGCIGTCYLEPIVD 55 Query: 152 I-----GKDTYEDLTPERLEEIIDAFSTGQGD 178 + K TY ++ +E I+D GQ + Sbjct: 56 VVDPSGNKITYVNVDTSDVERIVDEHILGQKN 87 >gi|309390026|gb|ADO77906.1| hypothetical protein Hprae_1781 [Halanaerobium praevalens DSM 2228] Length = 79 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV---NAPMV 150 VQ+C + C L G ++E N + + + E V+C C NAP+V Sbjct: 2 VKVQICVGSHCSLVGALNILETLEN-LKEDYPE-----QIKIERVKCMDRCGDIKNAPVV 55 Query: 151 MIGKD 155 + + Sbjct: 56 KVDDE 60 >gi|302342953|ref|YP_003807482.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Desulfarculus baarsii DSM 2075] gi|301639566|gb|ADK84888.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Desulfarculus baarsii DSM 2075] Length = 125 Score = 40.5 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 16/105 (15%) Query: 74 RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133 RV E Q L G + + V T + G ++ +++ K D + Sbjct: 15 RVHE------QINLREDGAQVKITVHMGTCGIASGARDVLNAAMDELD-KSGRT--DIII 65 Query: 134 SWEEVECQGACVNAPMVMI---GKDT--YEDLTPERLEEIIDAFS 173 + C G C PM+ + ++ Y + ++ +I + + Sbjct: 66 T--TSGCAGLCSQEPMITVERLNEEPIKYVFVDNAKMRQIFNRHA 108 >gi|284176189|ref|YP_003406466.1| hypothetical protein Htur_5162 [Haloterrigena turkmenica DSM 5511] gi|284017846|gb|ADB63793.1| hypothetical protein Htur_5162 [Haloterrigena turkmenica DSM 5511] Length = 121 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 14/111 (12%) Query: 94 AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC--- 144 A V VC C G + +E + + ++ N +S E C G C Sbjct: 14 AQVFVCTNDRDSEYVCCADVGGQATLEAVTDWLRERDAFWNP---ISVIETGCLGLCSED 70 Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 A + + Y D+ P + ++++ + D R G + R + P+ Sbjct: 71 GTAIAIQPRDEWYSDVRPAEVPDLLE--TEFGPDAERVGEEYRRRTDDPSA 119 >gi|78776534|ref|YP_392849.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251] gi|78497074|gb|ABB43614.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251] Length = 124 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C+ + L + K+ ++ + GT+ C C + P++++ G Y L Sbjct: 25 SCVTPQTQDLFQHLAQKLMKEGVM----GTIQPIRTSCLSRCSSGPVMLVEPGHFMYAAL 80 Query: 161 TPERLEEIIDAFSTG 175 T E+++ I++ G Sbjct: 81 TKEKIDRIVEEHLIG 95 >gi|149925916|ref|ZP_01914179.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105] gi|149825204|gb|EDM84415.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105] Length = 103 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%) Query: 95 HVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 HV C C C K K L N G + + C C P+ Sbjct: 7 HVFFCTNQRPNNESCC-ADCHASAAHAHAKERIKKLGLNGQGKIRMNKAGCLDRCDEGPV 65 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175 +++ Y + ++EIID+ G Sbjct: 66 MVVYPEGVWYTYVDISDVDEIIDSHLVG 93 >gi|288956851|ref|YP_003447192.1| 2Fe-2S ferredoxin [Azospirillum sp. B510] gi|288909159|dbj|BAI70648.1| 2Fe-2S ferredoxin [Azospirillum sp. B510] Length = 119 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 13/86 (15%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P G + C +G EKL + + + DG + C C Sbjct: 17 NRRPDGHKRG-------SCAAQGSEKLRDYMKAR----ARELGFDGKVRINSAGCLDRCE 65 Query: 146 NAPMVMI--GKDTYEDLTPERLEEII 169 P ++I Y + +++I+ Sbjct: 66 LGPTLVIYPEGVWYSYHSTADIDDIL 91 >gi|150388474|ref|YP_001318523.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149948336|gb|ABR46864.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 129 Score = 40.1 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V T + G +I ++ + + +V C G C + P+V Sbjct: 30 KHIKIMVGMATCGIAAGARDTFNTLLEEIDKRKMK-----NVYLVQVGCMGYCHDEPIVQ 84 Query: 152 IGK-----DTYEDLTPERLEEII 169 + Y + E+ EII Sbjct: 85 VNAPGASPVLYGHINQEKAIEII 107 >gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] Length = 601 Score = 40.1 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 + V VC C+ + ++ E + K + + + + C G C P+ Sbjct: 4 KKIVNVCCGAGCLAKHSMEVFEELKKKVAELGANAEVKTE---VQLKATGCDGLCEKGPV 60 Query: 150 VMI--GKDTY 157 + I Y Sbjct: 61 IKIYPDDIAY 70 >gi|148270046|ref|YP_001244506.1| ferredoxin-like protein [Thermotoga petrophila RKU-1] gi|170288730|ref|YP_001738968.1| ferredoxin-like protein [Thermotoga sp. RQ2] gi|281412073|ref|YP_003346152.1| Sucraseferredoxin family protein [Thermotoga naphthophila RKU-10] gi|147735590|gb|ABQ46930.1| Ferredoxin-like protein [Thermotoga petrophila RKU-1] gi|170176233|gb|ACB09285.1| ferredoxin-like protein [Thermotoga sp. RQ2] gi|281373176|gb|ADA66738.1| Sucraseferredoxin family protein [Thermotoga naphthophila RKU-10] Length = 126 Score = 40.1 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G R + V T + G ++ ++ +++ + ++ + C G C P Sbjct: 27 TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNI-----NDIAVVQSGCMGLCEVEPT 81 Query: 150 VMIGKD-----TYEDLTPERLEEIID 170 V + + Y +TPE + I+ Sbjct: 82 VEVRLEGQEPVIYGRVTPENAKRIVK 107 >gi|15642786|ref|NP_227827.1| NADP-reducing hydrogenase, subunit B [Thermotoga maritima MSB8] gi|4980494|gb|AAD35105.1|AE001689_11 NADP-reducing hydrogenase, subunit B [Thermotoga maritima MSB8] Length = 128 Score = 40.1 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 90 VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 G R + V T + G ++ ++ +++ + ++ + C G C P Sbjct: 29 TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNI-----NDIAVVQSGCMGLCEVEPT 83 Query: 150 VMIGKD-----TYEDLTPERLEEIID 170 V + + Y +TPE + I+ Sbjct: 84 VEVRLEGQEPVIYGRVTPENAKRIVK 109 >gi|78213488|ref|YP_382267.1| putative ferredoxin like protein [Synechococcus sp. CC9605] gi|78197947|gb|ABB35712.1| putative ferredoxin like protein [Synechococcus sp. CC9605] Length = 120 Score = 40.1 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 94 AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ +C T C + + ++ + R +G + + +C C Sbjct: 6 HHLLLCATATKAKCCDSALGAQTWNALKSIVRELDLENAAR-PEGIVLRSKADCLRVCER 64 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 P++++ Y D++P+R++ II+ GQ Sbjct: 65 GPILLVWPDGIWYSDVSPDRVKRIIEQHIIGQQPVDEW 102 >gi|307136211|gb|ADN34049.1| diacylglycerol acyltransferase [Cucumis melo subsp. melo] Length = 331 Score = 40.1 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 17/90 (18%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 ++VC C G L+E + + +C G C + P V + Sbjct: 240 RIEVCMGNKCKKAGAAALMEEFERVMGDEAA---------VCGCKCMGKCRDGPNVRVLG 290 Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQG 177 + E ++ I+ + +G Sbjct: 291 SMEMQNPLCIG-VGVEDVDRIVAEYLGQKG 319 >gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 589 Score = 40.1 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD--TY 157 C + G + R + P + +V C G C P+V + Y Sbjct: 12 SCGIAAGARPVEAKLRTLLEGHP-------EIEIRKVGCIGLCFQEPLVEVEVDGKSTMY 64 Query: 158 EDLTPERLEEIIDAFSTG 175 +T E +E+I+ G Sbjct: 65 GHVTEESVEDIVKKHVLG 82 >gi|255020292|ref|ZP_05292360.1| ferredoxin family protein [Acidithiobacillus caldus ATCC 51756] gi|254970212|gb|EET27706.1| ferredoxin family protein [Acidithiobacillus caldus ATCC 51756] Length = 115 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 18/103 (17%) Query: 81 FY--TQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 FY F G Q C + R + + G + Sbjct: 15 FYERHLFICLNRRESGE----QACNNSDIAERAFHSAKRHAKT-LGIHGA-----GKVRV 64 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175 C G C P ++ Y + + L EI+++ G Sbjct: 65 NRSGCLGRCSEGPTAVVYPDGVWYTYVDEDDLIEIVESHLRDG 107 >gi|146309582|ref|YP_001190047.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp] gi|145577783|gb|ABP87315.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp] Length = 241 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 14/105 (13%) Query: 86 QLSPVGTRA----------HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + PV + +C C +G L + R ++ DG + Sbjct: 117 DVPPVPAHHAWSQIPPHAQRLLLCNGPRCTRKGALGLWKTLRQRLK-AAGKLECDGGVHI 175 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG 177 +CQ C P + + Y + ++D G+ Sbjct: 176 TRSQCQFPCDLGPTASLYPQGEWYGIRDEAAVIRLVDERLVAGRA 220 >gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469] gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469] Length = 626 Score = 40.1 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 16/98 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVC----RNKIHQK----PLHRNSDGTLSWEEVECQGACVN 146 + VC T C+ G +K+ E +++ + P + + ++ CQG C Sbjct: 25 RILVCSGTGCIATGSQKIYEEFLKIAKDEPGIRIDFAPHGQGE--HVGIKKTGCQGVCEL 82 Query: 147 APMVMI--GKDT--YEDLTPERLEEIIDAFSTGQGDTI 180 P+V I G Y + EI + + +GD + Sbjct: 83 GPLVRIQKGDQVVQYTKVQLSDCREIFE--RSVKGDDV 118 >gi|322503053|emb|CBZ38137.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 919 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 23/122 (18%) Query: 39 QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 QSA + L E +EG V AA V IAT + +QL R + Sbjct: 507 QSAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK---NRVLL 552 Query: 97 -----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV-NAPM 149 VC T +RG E+LI + Q +D L W +C C P Sbjct: 553 LEAVQSVCQTLGAAVRGSEELISTLLAPLGQLWSQTPNDSPLLWSLFDCMATVCATLGPA 612 Query: 150 VM 151 + Sbjct: 613 MQ 614 >gi|294102540|ref|YP_003554398.1| NADP-reducing hydrogenase, subunit B [Aminobacterium colombiense DSM 12261] gi|293617520|gb|ADE57674.1| NADP-reducing hydrogenase, subunit B [Aminobacterium colombiense DSM 12261] Length = 122 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 19/100 (19%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 + + V T + G +++ ++I + ++ + C G C + P+V + Sbjct: 28 KVVIIVGMGTCGIAAGAREIMTAIMDEI-----EKRKLNEVNVQTTGCIGMCQDEPLVDV 82 Query: 153 --GKD--TYEDLTPERLEEII----------DAFSTGQGD 178 TY ++ P + II + + G+ D Sbjct: 83 IRDGKRITYGNVKPSDIPVIITEHVVNGHIVEKLAIGRAD 122 >gi|146101171|ref|XP_001469044.1| hypothetical protein [Leishmania infantum] gi|134073413|emb|CAM72141.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 919 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 23/122 (18%) Query: 39 QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96 QSA + L E +EG V AA V IAT + +QL R + Sbjct: 507 QSAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK---NRVLL 552 Query: 97 -----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV-NAPM 149 VC T +RG E+LI + Q +D L W +C C P Sbjct: 553 LEAVQSVCQTLGAAVRGSEELISTLLAPLGQLWSQTPNDSPLLWSLFDCMATVCATLGPA 612 Query: 150 VM 151 + Sbjct: 613 MQ 614 >gi|150391792|ref|YP_001321841.1| ferredoxin [Alkaliphilus metalliredigens QYMF] gi|149951654|gb|ABR50182.1| ferredoxin [Alkaliphilus metalliredigens QYMF] Length = 119 Score = 40.1 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 14/90 (15%) Query: 86 QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + GTR V + C + G ++ ++ ++ L + + C G C Sbjct: 18 RTEKGGTRIVVGMAT---CGIASGARPVMMALMEEVKKRNLE-----HIIVTQTGCIGVC 69 Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEII 169 P+V I K TY D+T E+ ++I Sbjct: 70 KYEPIVEIYKEGEDKVTYVDMTAEKARKVI 99 >gi|124005441|ref|ZP_01690282.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134] gi|123989263|gb|EAY28841.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134] Length = 108 Score = 39.7 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 12/83 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAPMV- 150 V VC + C +G + R S G + C G C AP+V Sbjct: 11 TVLVCTGSKCGSKGGNNHYKSLRAM-------TRSAGKKDEVQIIRTACSGNCKMAPLVG 63 Query: 151 -MIGKDTYEDLTPERLEEIIDAF 172 M Y + +++ ++ Sbjct: 64 IMPKNKWYGQVNNDKVVKLFGKL 86 >gi|302391320|ref|YP_003827140.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501] gi|302203397|gb|ADL12075.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501] Length = 118 Score = 39.7 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-----DTYEDLTP 162 G +++ V ++ ++ + ++ + C G C P+V + + TY ++TP Sbjct: 41 GAREVLNVISEELDRQEID-----NVTLNQRGCIGLCHYEPIVEVKESDQEVVTYGNITP 95 Query: 163 ERLEEIIDA 171 E II+ Sbjct: 96 EGARRIIEE 104 >gi|299143935|ref|ZP_07037015.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518420|gb|EFI42159.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 91 Score = 39.7 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 16/92 (17%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL------SWEEVECQGACVN-- 146 V +C + C L G + + K + E C C N Sbjct: 2 KVTICMGSRCTLMGANAIYDAVDF---LKDNICTPESDYCSAENLEIELSHCMNYCKNAE 58 Query: 147 ----APMVMIGKDTYEDLTPERL-EEIIDAFS 173 AP+V++ + T + + +IID Sbjct: 59 HGNLAPIVIVDDEIIYKATAQEVSAKIIDKLK 90 >gi|258513530|ref|YP_003189752.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans DSM 771] gi|257777235|gb|ACV61129.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans DSM 771] Length = 119 Score = 39.7 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 V V T + G + ++ +I K + ++ + C GAC P+V I Sbjct: 28 TVNVSMGTCGIAAGARETMKTLIEEISSKNIK-----DIALTQTGCLGACQQEPLVQIQK 82 Query: 154 ---KDTYEDLTPERLEEIIDA-FSTGQ 176 K TY ++ E+ +I++ G+ Sbjct: 83 GGEKVTYINVDQEKARQIVNRHLLEGK 109 >gi|119356125|ref|YP_910769.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266] gi|119353474|gb|ABL64345.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266] Length = 100 Score = 39.7 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 AHV VC RG EK + ++ Q + G + C G C N Sbjct: 11 AHVFVCTND----RGGEKKSCADNNSQLTKARLKQAVDEKGWRGKVRISTSGCMGLCSNG 66 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 VMI K + + P+ ++EI+ A Sbjct: 67 SHVMIYPQKVWFSGVLPDDVDEIVSA 92 >gi|313226141|emb|CBY21284.1| unnamed protein product [Oikopleura dioica] Length = 4621 Score = 39.7 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 99 CGTTPCMLR--GCE-KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 C + C L+ G E L+E +++ + D + C AC +A Sbjct: 2671 CASALCKLKISGSESNLMEFIIDRLLLQKGETTPDNLC-LNLLACFAACDHA 2721 >gi|269929061|ref|YP_003321382.1| hypothetical protein Sthe_3160 [Sphaerobacter thermophilus DSM 20745] gi|269788418|gb|ACZ40560.1| hypothetical protein Sthe_3160 [Sphaerobacter thermophilus DSM 20745] Length = 179 Score = 39.7 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 10/94 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC--QGACVNAPM 149 TR HV +C C +G + + R ++ +K L + C C P Sbjct: 4 TRKHVLICTAQHCNQKGAQAVAGRLRIELKRKGLD------VDVLANTCDSIDICDIGPN 57 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 +++ + Y + + E++++ G R Sbjct: 58 IVVYPDRIIYHGVKTSDIPELVESLRPGGKPVER 91 >gi|15807573|ref|NP_296310.1| hypothetical protein DR_2591 [Deinococcus radiodurans R1] gi|6460424|gb|AAF12135.1|AE002088_12 hypothetical protein DR_2591 [Deinococcus radiodurans R1] Length = 121 Score = 39.7 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMI 152 H+ +C + C R L + N + + L G++ + C GAC P + + Sbjct: 13 HLLLCRGSSCQQRNSVLLHKALWNALERDGLAYYKQGGSVRLTDSGCLGACKFGPTLCV 71 >gi|320102434|ref|YP_004178025.1| Sucraseferredoxin family protein [Isosphaera pallida ATCC 43644] gi|319749716|gb|ADV61476.1| Sucraseferredoxin family protein [Isosphaera pallida ATCC 43644] Length = 129 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 14/88 (15%) Query: 94 AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 HV +CG T C G + L E + + + L + C C Sbjct: 6 HHVFICGNTRAPGHSRGCCDPTGKQPLREAFKEEFRKVGLGST----VRANHAGCLDQCE 61 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171 P V+I Y + E + I++ Sbjct: 62 LGPTVVIYPQNIWYGRVRIEDVPRIVER 89 >gi|300868871|ref|ZP_07113477.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300333088|emb|CBN58669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 108 Score = 39.7 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + VC C+ G +++E P ++ + CQG C P V I Sbjct: 17 CILVCQYQSCLRNGAAEVLEAFEAA--AVPG-------ITVQASGCQGQCSIGPTVRITP 67 Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187 + Y + P ++ I++ G+ P+I Sbjct: 68 EEIWYCRVKPTDVQLIVEQHLQGGKPVDALLNPRIH 103 >gi|256839948|ref|ZP_05545457.1| NADP-reducing hydrogenase subunit B [Parabacteroides sp. D13] gi|262381804|ref|ZP_06074942.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_33B] gi|298375633|ref|ZP_06985590.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 3_1_19] gi|256738878|gb|EEU52203.1| NADP-reducing hydrogenase subunit B [Parabacteroides sp. D13] gi|262296981|gb|EEY84911.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_33B] gi|298268133|gb|EFI09789.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 3_1_19] Length = 132 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 11/84 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 ++V T + G ++++ + ++ + D ++ + C G C P + I Sbjct: 34 VQIKVSMATCGIAAGAKEIMSYFIEVLDRQKI----DALVT--QTGCMGYCYAEPTIEIK 87 Query: 153 --GKD--TYEDLTPERLEEIIDAF 172 G++ + + ++EEIID + Sbjct: 88 LPGQEPLVFGYVDKAKVEEIIDKY 111 >gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg] Length = 620 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 16/99 (16%) Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142 + F+ P + + T G ++ V + + + S C G Sbjct: 15 SLFRDEP-----VIFLGSATCGRSAGAHEIERVLLERASELSVE------CSIVHTGCMG 63 Query: 143 ACVNAPMVMI-GKDT----YEDLTPERLEEIIDAFSTGQ 176 C PMV + DT Y + + II + G+ Sbjct: 64 LCYAEPMVTVFNGDTRGAIYGPVNRRLAKRIIQELADGE 102 >gi|146296867|ref|YP_001180638.1| hypothetical protein Csac_1862 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410443|gb|ABP67447.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 129 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G + V T + G ++ +I ++ L ++ + C G C Sbjct: 21 FRKQQGEGIRIVVGMATCGIAAGARPVMLKFVEEIQKRSLK-----NVTVVQTGCIGLCK 75 Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171 P+V + K+ TY +TPE++ ++ Sbjct: 76 YEPIVEVYEPNKEKVTYVKMTPEKVSRVVAE 106 >gi|113478112|ref|YP_724173.1| hypothetical protein Tery_4743 [Trichodesmium erythraeum IMS101] gi|110169160|gb|ABG53700.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 83 Score = 39.7 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 13/82 (15%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVM 151 + + VC + C +G K++ + D ++ ++ C G C N PM++ Sbjct: 8 KRLLLVCQSRTCRKQGSAKVLANFQKF----------DMPNITIKKSGCLGKCGNGPMIL 57 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + + Y + + + I++ Sbjct: 58 VLPEEVWYSHVELQNISVIMEK 79 >gi|150007687|ref|YP_001302430.1| NADP-reducing hydrogenase subunit B [Parabacteroides distasonis ATCC 8503] gi|255013608|ref|ZP_05285734.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_7] gi|301310276|ref|ZP_07216215.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 20_3] gi|149936111|gb|ABR42808.1| NADP-reducing hydrogenase B chain - Desulfovibrio fructosovorans gi|466364|gb|AAA87055.1| potential NAD-reducing hydrogenase subunit [Parabacteroides distasonis ATCC 8503] gi|300831850|gb|EFK62481.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 20_3] Length = 134 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 11/84 (13%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 ++V T + G ++++ + ++ + D ++ + C G C P + I Sbjct: 36 VQIKVSMATCGIAAGAKEIMSYFIEVLDRQKI----DALVT--QTGCMGYCYAEPTIEIK 89 Query: 153 --GKD--TYEDLTPERLEEIIDAF 172 G++ + + ++EEIID + Sbjct: 90 LPGQEPLVFGYVDKAKVEEIIDKY 113 >gi|91786159|ref|YP_547111.1| ferredoxin-like protein [Polaromonas sp. JS666] gi|91695384|gb|ABE42213.1| Ferredoxin-like protein [Polaromonas sp. JS666] Length = 124 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 30/129 (23%) Query: 56 VSRAAIEVVANILDMAYIRVLEIATFY--TQF---QLSPVGTRAHVQVCGTTPCMLRGCE 110 +S+ A+ A A++Y F P G C + Sbjct: 5 ISQDAVPAPAKA-----------ASYYERHIFFCLNQRPPGED---------SCANHQAQ 44 Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEI 168 + + C+++ K G + + C C P+ ++ + Y + ++EI Sbjct: 45 EGFDRCKSQ--VKAAGLAGPGKVRVNKAGCLDRCAGGPVAVVYPEAVWYSYVDAHDIDEI 102 Query: 169 IDA-FSTGQ 176 +++ GQ Sbjct: 103 VESHLKNGQ 111 >gi|255082578|ref|XP_002504275.1| predicted protein [Micromonas sp. RCC299] gi|226519543|gb|ACO65533.1| predicted protein [Micromonas sp. RCC299] Length = 281 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + VC C RG +L + P N + C AC +V + Sbjct: 189 IVVCTNNACAKRGARELKAELERAVGATAAPNGSNRGARCVVKGARCMDACGAGCVVRVV 248 Query: 153 ---GKDTYEDLTPERLEEIIDAFSTGQG 177 G +T+ + ++ +TG+ Sbjct: 249 GVAGLETHLLVDASEA-GVVAELATGRA 275 >gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit [Candidatus Kuenenia stuttgartiensis] Length = 594 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 13/76 (17%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156 C + G + L +KI N D +S C G C P++ + Sbjct: 16 SCGIAAGAKDLYGELASKI-----ENNPD--VSLSHTSCNGMCFKEPILEVFYPDGNHLM 68 Query: 157 YEDLTPERLEEIIDAF 172 ++ + L++I+D Sbjct: 69 MGNVHKKDLDKILDPL 84 >gi|318042063|ref|ZP_07974019.1| ferredoxin [Synechococcus sp. CB0101] Length = 113 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182 +C CV P+++I Y +TPER+E I+ G G I P Sbjct: 55 ADCLRICVEGPVLLIWPEGIVYGSVTPERIERILRDHVVG-GTPIEP 100 >gi|222529288|ref|YP_002573170.1| hypothetical protein Athe_1297 [Caldicellulosiruptor bescii DSM 6725] gi|312622466|ref|YP_004024079.1| hypothetical protein Calkro_1404 [Caldicellulosiruptor kronotskyensis 2002] gi|222456135|gb|ACM60397.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM 6725] gi|312202933|gb|ADQ46260.1| hypothetical protein Calkro_1404 [Caldicellulosiruptor kronotskyensis 2002] Length = 129 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G V V T + G ++ +I ++ L ++ + C G C Sbjct: 21 FRKQQGEGIRVVVGMATCGIAAGARPVMLKFIEEIQKRNLK-----NVTVVQTGCIGLCK 75 Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171 P+V + K+ TY +TPE++ ++ Sbjct: 76 YEPIVEVYEPNKEKVTYVKMTPEKVTRVVAE 106 >gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 590 Score = 39.3 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG----KDTY 157 C L G + + E + ++V C G C P+V + + Y Sbjct: 12 SCGLASGADSVYEELSKVLVGDENTI-------LKKVGCIGLCSYEPLVEVEIEGKRTIY 64 Query: 158 EDLTPERLEEII 169 +TPE +E++ Sbjct: 65 GYMTPELAKELV 76 >gi|326531826|dbj|BAJ97917.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 402 Score = 39.3 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 9/56 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 ++VC C G +++ ++ + +C G C P V Sbjct: 317 RIEVCMGGKCKKAGSLAVLQEFETELGMGG---------TVVGCKCLGKCGLGPNV 363 >gi|225405647|ref|ZP_03760836.1| hypothetical protein CLOSTASPAR_04868 [Clostridium asparagiforme DSM 15981] gi|225042841|gb|EEG53087.1| hypothetical protein CLOSTASPAR_04868 [Clostridium asparagiforme DSM 15981] Length = 125 Score = 39.3 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 92 TRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H++V C + G ++ + + +S + C G C P+ Sbjct: 24 DHNHIRVVVGMATCGIAAGARPVLNTLAQE--VQTRGLTD--KISVTQTGCIGLCQYEPI 79 Query: 150 VMI-----GKDTYEDLTPERLEEIIDAFSTG 175 V + K TY + ++ EI++ G Sbjct: 80 VEVMEPGKDKVTYVKMNADKAVEIVERHLIG 110 >gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 582 Score = 39.3 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GKD--T 156 C + G +K+ + N++ + G+ V C G C P++ + T Sbjct: 9 SCGIAAGAQKVYKEIENQLKV-YGSNSPVGS-----VGCIGMCYLEPIIEFLSDDGEKYT 62 Query: 157 YEDLTPERLEEIIDAFSTGQ 176 Y +TP + EI++ GQ Sbjct: 63 YTKVTPNIVAEIVEGILEGQ 82 >gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 595 Score = 39.3 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGACVNAPMVMIG 153 V +C T + G +++E + K + + C+G C V++ Sbjct: 10 VHICMGTAGVASGGYEVMEAFEQEFK-KEGVPAILKERNCKVKATGCRGLCARD--VLVD 66 Query: 154 KD-------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203 TYE +TPE + I+ + + D L D Sbjct: 67 IHLPGMEPITYEHVTPEMVPAIVQEHIGNGQVVEKWAAKKDYYDFYKLQKRYVLKDC 123 >gi|86609166|ref|YP_477928.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557708|gb|ABD02665.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 149 Score = 39.3 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--ECQGACVNA---PMVMI--GKDT 156 C + + +++I + L S G+L C AC A P++++ G Sbjct: 48 CEKAVGLEAWDYLKSRIKELNLEIGSGGSLRVHRTKANCLRACDYAVPGPVLLVYPGGFW 107 Query: 157 YEDLTPERLEEIIDAFSTG 175 Y +TPE +EEI+ G Sbjct: 108 YHSVTPEVVEEILQKHILG 126 >gi|312127641|ref|YP_003992515.1| hypothetical protein Calhy_1429 [Caldicellulosiruptor hydrothermalis 108] gi|312793479|ref|YP_004026402.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876006|ref|ZP_07735995.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus 6A] gi|311777660|gb|ADQ07146.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis 108] gi|311797204|gb|EFR13544.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus 6A] gi|312180619|gb|ADQ40789.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 129 Score = 39.3 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 G V V T + G ++ +I ++ L ++ + C G C Sbjct: 21 FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NVTVVQTGCIGLCK 75 Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171 P+V + K+ TY +TPE++ +++ Sbjct: 76 YEPIVEVYEPNKEKVTYVKMTPEKVLKVVAE 106 >gi|291084683|ref|ZP_06570879.1| hypothetical protein Salmonellaentericaenterica_40312 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 24 Score = 39.3 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 150 VMIGKDTYEDLTPERLEEIIDAFS 173 +MI +DT+ LTPE + E+++ + Sbjct: 1 MMIDEDTHSHLTPEAIPELLERYK 24 >gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 596 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 RAHV VCG T C K+I+ ++ + L + + + C G C P+V++ Sbjct: 5 RAHVLVCGGTGCASSDSFKMIDKFEEELKKVELEK----EIKVVKTGCFGLCEAGPIVIV 60 Query: 153 --GKDTYEDLTPERLEEI 168 G Y + E +E I Sbjct: 61 YPGGVFYSQVKLEDVERI 78 >gi|154249676|ref|YP_001410501.1| ferredoxin-like protein [Fervidobacterium nodosum Rt17-B1] gi|154153612|gb|ABS60844.1| ferredoxin-like protein [Fervidobacterium nodosum Rt17-B1] Length = 126 Score = 39.3 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Query: 85 FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 ++ G R + V T + G + ++ ++ D ++ + C G C Sbjct: 21 IKMRESGKRGKIIVAMGTCGIAAGAKDTLKAIVEYMN----EMKID-DIAVVQSGCMGLC 75 Query: 145 VNAPMVMIGKD-----TYEDLTPERLEEIIDA 171 P + + + Y +TPE + I+ + Sbjct: 76 EVEPTIEVSLEGQEPVIYGHVTPENAKRIVQS 107 >gi|298705132|emb|CBJ28575.1| conserved unknown protein [Ectocarpus siliculosus] Length = 429 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 14/84 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V +C CM +G + +G + + V C G C P V + Sbjct: 192 RVYICTNRWCMEKGSAA-------TLGSFVG-LAPEGEVLVQGVNCLGRCNKGPNVRVRQ 243 Query: 153 ---GKDTYEDL-TPERLEEIIDAF 172 + + ER+ +I+ + Sbjct: 244 ETGNWLEFNRIENVERVYKILRDY 267 >gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 633 Score = 39.3 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 130 DGTLSWEEVECQGACVNAPMVMI---GK--DTYEDLTPERLEEIIDAFST 174 D + C G C P+V I Y+ T +++ +I+D + Sbjct: 55 DRNIRLRSTGCLGFCEMEPLVEIYRKNGPRIIYKKATEDKIRDIVDGYRE 104 >gi|302815787|ref|XP_002989574.1| hypothetical protein SELMODRAFT_447731 [Selaginella moellendorffii] gi|300142752|gb|EFJ09450.1| hypothetical protein SELMODRAFT_447731 [Selaginella moellendorffii] Length = 229 Score = 39.3 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 89 PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 PV R V+VC C G ++++ + KI S T +C G C P Sbjct: 130 PVCAR--VEVCTGGKCRKAGSQQVLAAFQAKISSSSSPSLSSAT----SCKCMGMCGQGP 183 Query: 149 MVMIGKD------TYEDLTPERLEEIIDA 171 V I + + + ++ ++ Sbjct: 184 NVRIQGAGDGAPLAFNHVGVKDVDPLLQQ 212 >gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977] Length = 538 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 54 GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE--K 111 G + A +E A + + E FY +++ P + + V +RG + + Sbjct: 45 GHLEPADVEAAAREARVPLAQAWEAVRFYPRYRTEPP-EKRFLLVDDPV---VRGRDFAR 100 Query: 112 LIEVCRN 118 L + Sbjct: 101 LWAELED 107 >gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803] gi|2500787|sp|Q59996|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] Length = 404 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 7 AEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPL--------LMRAQE----QE 53 A E+F P+ + FS S W+ + I+R ++ + +P+ + RAQ ++ Sbjct: 205 AVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEK 264 Query: 54 GWVSRAAIEVVANILDMAYIRVLEIAT 80 G + I+ VA L M +V E+ T Sbjct: 265 GHTPK--IDEVAEELGMTPEQVREVLT 289 >gi|154246274|ref|YP_001417232.1| ferredoxin, 2Fe-2S (AaFd4) [Xanthobacter autotrophicus Py2] gi|154160359|gb|ABS67575.1| ferredoxin, 2Fe-2S (AaFd4) [Xanthobacter autotrophicus Py2] Length = 117 Score = 38.9 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 33/127 (25%) Query: 65 ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVC 116 + +LD+ +V HV C T C G L + Sbjct: 7 SEVLDIP--QVY----------------THHVFCCFTQRPPQHPRGSCGANGAAPLWDRL 48 Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFST 174 K+ + ++ C C P++++ Y +PE ++EI+ + Sbjct: 49 AKKL-----EASGRRDIAMTSAGCLSFCQAGPIMVVYPQGIWYTPKSPEDIDEIVTSHLL 103 Query: 175 GQGDTIR 181 G R Sbjct: 104 GGKPVER 110 >gi|302148781|pdb|3M7G|A Chain A, Structure Of Topoisomerase Domain Of Topoisomerase V Protein Length = 269 Score = 38.9 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +I RY P + ++ +L + W +A L ++ V Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216 >gi|87124850|ref|ZP_01080698.1| putative ferredoxin like protein [Synechococcus sp. RS9917] gi|86167729|gb|EAQ68988.1| putative ferredoxin like protein [Synechococcus sp. RS9917] Length = 110 Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 +C C P+++I Y +TPER++ I++ G Sbjct: 54 ADCLRVCEQGPVLLIWPDGIWYGGVTPERVQLILERHVVG 93 >gi|125592038|gb|EAZ32388.1| hypothetical protein OsJ_16597 [Oryza sativa Japonica Group] Length = 228 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 9/58 (15%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 G ++VC C +G +++ + + C G C P Sbjct: 29 GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGP 77 >gi|292493541|ref|YP_003528980.1| Fe2-S2-type ferredoxin [Nitrosococcus halophilus Nc4] gi|291582136|gb|ADE16593.1| Fe2-S2-type ferredoxin [Nitrosococcus halophilus Nc4] Length = 104 Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 10/87 (11%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R HV C C L + K K L + C C Sbjct: 7 RYHVFFCTNQRDNGRPCCQNHDALALRNYAKEK--VKALGLAQQRQVRINTAGCLNRCAQ 64 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P ++I Y E ++EII+ Sbjct: 65 GPTIVIYPEGTWYTYANREDIDEIINE 91 >gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] Length = 584 Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD------ 155 C + G +K+ + +K + N D C G C P+V I +D Sbjct: 9 SCGIATGAKKVANRFEEILGEKNIDINVD------ITGCIGTCFLEPIVDIYEDGKGEPT 62 Query: 156 TYEDLTPERLEEIIDAFSTG 175 Y + P+ + EI+++ G Sbjct: 63 RYVKVKPDDVAEIVESHIEG 82 >gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 583 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 12/75 (16%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD----T 156 C + G +++E + ++ + + + ++ C G C P+V +I D T Sbjct: 9 SCGIAAGGNRVLEAIQEEVESRKID------VDVKKAGCIGMCYLEPIVDVIDDDGNKTT 62 Query: 157 YEDLTPERLEEIIDA 171 Y +TPE ++EI + Sbjct: 63 YVRVTPEIVKEIFEK 77 >gi|108760310|ref|YP_631137.1| ferredoxin, 2Fe-2S [Myxococcus xanthus DK 1622] gi|108464190|gb|ABF89375.1| ferredoxin, 2Fe-2S [Myxococcus xanthus DK 1622] Length = 113 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 14/87 (16%) Query: 95 HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 HV VC C +G E++ + ++ ++ L G + C C Sbjct: 8 HVFVCTNRRPDGNPKGCCASKGAEEVRAAFKAELDKRGLK----GGMRANAAGCLDTCSF 63 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 V++ Y + E +++I++ Sbjct: 64 GVAVVVYPEGTWYGGVKVEDVKDIVEQ 90 >gi|170079142|ref|YP_001735780.1| ferredoxin PetF2 [Synechococcus sp. PCC 7002] gi|22651984|gb|AAN03538.1|AF381035_2 ferredoxin PetF2 [Synechococcus sp. PCC 7002] gi|169886811|gb|ACB00525.1| ferredoxin PetF2 [Synechococcus sp. PCC 7002] Length = 124 Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 17/105 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 V +C C +G ++ + + + + + C G C N P+V + Sbjct: 4 TVLICCHHTCPKQGSTAILAAFQAQ---------APADVEVRQAGCFGECGNGPLVRVLP 54 Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIR-----PGPQIDRISS 191 + Y + + I+ + + P I++ Sbjct: 55 DEVWYAHVQQADIPAIVKQHLRQNRPVKQKLYGKFHQPNHGAIAA 99 >gi|302879930|ref|YP_003848494.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans ES-2] gi|302582719|gb|ADL56730.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans ES-2] Length = 103 Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 95 HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNA 147 HV C C G +K + +NK K L ++ G ++ C C Sbjct: 7 HVFFCTNQREDGSDCCGNHGAQKARDYVKNK--VKELGISARGNSIRINSAGCLDRCDEG 64 Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 P+++I Y + L+EII + G+ Sbjct: 65 PVLVIYPEGVWYTFIDESDLDEIIAEHLQHGR 96 >gi|218710611|ref|YP_002418232.1| cobalamin biosynthesis protein [Vibrio splendidus LGP32] gi|218323630|emb|CAV19909.1| Cobalamin biosynthesis protein [Vibrio splendidus LGP32] Length = 534 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQGACVNAPMV 150 R HV +C C G + L R + SDG + C G C N + Sbjct: 414 RHHVLLCEGGRCAKEGSKNLAHDLRQVLKALNF---SDGEQRIKISRTHCAGTCRNRAAM 470 Query: 151 MIGKDTYEDLTP 162 +I + E TP Sbjct: 471 VIYERLLEHETP 482 >gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 590 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 + +C T + G +K+ I +K L + C+G C N +V I Sbjct: 6 KILICQGTGGISAGAKKVEAEFNRIIAEKGLSATVGKRCDIVKTGCRGLCANDVLVDIVD 65 Query: 155 D----TYEDLTPERLEEIIDA 171 D TY+ + PE + ++++ Sbjct: 66 DKGCTTYDFVQPEEVAKLVEE 86 >gi|86146397|ref|ZP_01064721.1| cobalamin biosynthesis protein [Vibrio sp. MED222] gi|85835876|gb|EAQ54010.1| cobalamin biosynthesis protein [Vibrio sp. MED222] Length = 534 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQGACVNAPMV 150 R HV +C C G + L R + SDG + C G C N + Sbjct: 414 RHHVLLCEGGRCAKEGSKNLAHDLRQVLKALNF---SDGEQRIKISRTHCAGTCRNRAAM 470 Query: 151 MIGKDTYEDLTP 162 +I + E TP Sbjct: 471 VIYERLLEHETP 482 >gi|300856936|ref|YP_003781920.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM 13528] gi|300437051|gb|ADK16818.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM 13528] Length = 286 Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 26/135 (19%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV---ANILDMAYI 73 +F+ E +N++ +Y R S + L + W+ E V A L + Sbjct: 34 NFTVEELNNINKIAEKY--GRGYSGLTTRLQI---EVPWIKDEDAEKVIQEAKALGL--- 85 Query: 74 RVLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + G + + C T C L G + ++ +K ++ Sbjct: 86 ------------RHGGTGQKVRPLVSCKGTVC-LHGNID-TQAICRELDRKYFGTDTPHK 131 Query: 133 LSWEEVECQGACVNA 147 V C C A Sbjct: 132 CKIGIVGCANNCGKA 146 >gi|88192676|pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus Kandleri (61 Kda Fragment) gi|88192677|pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus Kandleri (61 Kda Fragment) Length = 519 Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +I RY P + ++ +L + W +A L ++ V Sbjct: 164 PEXAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216 >gi|282890777|ref|ZP_06299297.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499370|gb|EFB41669.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 121 Score = 38.9 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 8/85 (9%) Query: 93 RAHVQVCGTT----PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 + H+ +C C + E + ++ K LH + G + + +C C P Sbjct: 20 KRHIFICCDPKKPKCCQPAEGLESWEYLKTRL--KELHLSELGGIYRSKADCLRVCKKGP 77 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171 +V++ Y TPE LE II Sbjct: 78 IVVVYPDGIWYHSCTPEVLERIIQE 102 >gi|302148776|pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of Topoisomerase V In The Presence Of Guanidium Hydrochloride gi|302148777|pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of Topoisomerase V In The Presence Of Guanidium Hydrochloride gi|302148778|pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of Topoisomerase V In The Presence Of Guanidium Hydrochloride gi|302148779|pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of Topoisomerase V In The Presence Of Guanidium Hydrochloride gi|302148780|pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of Topoisomerase V In The Presence Of Dioxane Length = 380 Score = 38.6 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +I RY P + ++ +L + W +A L ++ V Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216 >gi|126331781|ref|XP_001372368.1| PREDICTED: similar to Gamma-aminobutyric acid (GABA) A receptor, alpha 4 [Monodelphis domestica] Length = 555 Score = 38.6 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 123 KPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTY--EDLTPERLEEIIDAFSTGQGDT 179 +P S G + + C AC+N P D E L PE I+D+ G + Sbjct: 7 EPGTTMSSGVSFTLLHFLCLAACLNEPP----GDPQKEEKLRPENFTRILDSLLDGYDNR 62 Query: 180 IRPG 183 +RPG Sbjct: 63 LRPG 66 >gi|260436757|ref|ZP_05790727.1| ferredoxin [Synechococcus sp. WH 8109] gi|260414631|gb|EEX07927.1| ferredoxin [Synechococcus sp. WH 8109] Length = 129 Score = 38.6 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 10/94 (10%) Query: 94 AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ +C T C + + +++ + R +G + + +C C Sbjct: 6 HHLLLCATATKAKCCDSALGAQTWNELKSVVRELNLENPER-PEGIVLRSKADCLRVCER 64 Query: 147 APMVMIG--KDTYEDLTPERLEEIIDAFSTGQGD 178 P++++ Y +++P+R++ IID GQ Sbjct: 65 GPILLVWPEGIWYANVSPDRIKRIIDEHIIGQQP 98 >gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] Length = 622 Score = 38.6 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 10/82 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIH------QKPLHRNSDGTLSWEEVECQGACVNAP 148 V VCG T C+ G K+ E + K + + + C G C P Sbjct: 25 RVLVCGGTGCLASGSGKIYEKLKELTKDHTGVEVKIGEEIAHTKV--MKSGCHGFCEMGP 82 Query: 149 MVMIG--KDTYEDLTPERLEEI 168 +V I Y + E EEI Sbjct: 83 LVRIEPYNYLYIKVKLEDCEEI 104 >gi|313683410|ref|YP_004061148.1| ferredoxin, 2fe-2S [Sulfuricurvum kujiense DSM 16994] gi|313156270|gb|ADR34948.1| ferredoxin, 2Fe-2S [Sulfuricurvum kujiense DSM 16994] Length = 124 Score = 38.6 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C+ + + + + QK L + C C P++++ G Y L Sbjct: 25 SCVNPHTQDIFQHLAQTLMQKGLIAT----VQPIRTSCMNRCNVGPIMLVEPGHVMYAGL 80 Query: 161 TPERLEEIIDAFSTG 175 T E++ EIID G Sbjct: 81 TKEKINEIIDRHIIG 95 >gi|262198531|ref|YP_003269740.1| Ferredoxin-like protein [Haliangium ochraceum DSM 14365] gi|262081878|gb|ACY17847.1| Ferredoxin-like protein [Haliangium ochraceum DSM 14365] Length = 130 Score = 38.6 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 20/90 (22%) Query: 95 HVQVCGTT--------PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143 HV VC C RG +++ + + + K + C Sbjct: 7 HVFVCINERAPGHPRGCCKSRGGDEVRTAFKRELGRLGIKD-------RVRANNAGCLDQ 59 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 C + V+I + Y +T + E+I+ Sbjct: 60 CEHGVTVVIYPEQVWYGGVTESDVPELIER 89 >gi|312114322|ref|YP_004011918.1| ferredoxin [Rhodomicrobium vannielii ATCC 17100] gi|311219451|gb|ADP70819.1| ferredoxin [Rhodomicrobium vannielii ATCC 17100] Length = 121 Score = 38.6 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C G LIE K + L D L+ C G C P+V++ Y Sbjct: 39 SCAASGAMPLIERLSAK--IQALQ---DPELAVTVTGCLGFCQAGPVVVVYPEGIWYAPK 93 Query: 161 TPERLEEI 168 T E ++EI Sbjct: 94 TVEDIDEI 101 >gi|219848997|ref|YP_002463430.1| hypothetical protein Cagg_2108 [Chloroflexus aggregans DSM 9485] gi|219543256|gb|ACL24994.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485] Length = 83 Score = 38.6 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 16/87 (18%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ--GA---CVNAP 148 + +C C RG +L + Q L + VEC G C P Sbjct: 2 VRLYLCMGPNCRSRGAAELRMALEQALWQHGL---------LDRVECISSGCQDHCQIGP 52 Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFS 173 ++ G + +T +++ ++ + Sbjct: 53 NLLLQPGGRCWHGVTLQQISALVAVLA 79 >gi|296088006|emb|CBI35289.3| unnamed protein product [Vitis vinifera] Length = 285 Score = 38.6 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++VC C +G ++ + D ++ + C G C P + + Sbjct: 78 LRVCVNRTCRRQGS---LQTLETLSGIA----SPD--VAVKSCGCLGRCGAGPNLVALPD 128 Query: 154 KDTYEDL-TPERLEEIIDAFSTG 175 T R E++ +F G Sbjct: 129 GVIVGHCGTAARAAEVMMSFVAG 151 >gi|325281878|ref|YP_004254420.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM 20712] gi|324313687|gb|ADY34240.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM 20712] Length = 80 Score = 38.6 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 +++C + C RG +EV + H ++ + S E C + P++ I + Sbjct: 4 IKICLGSSCYSRGNNVHLEVIKKY--IAENHLEAEISFSGHLCEEL--CSSGPILRIDEK 59 Query: 156 TYEDLTPERLEEIIDA 171 Y+++ L +I+ Sbjct: 60 VYKEVNLSGLYKILQE 75 >gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19] gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri] gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19] Length = 984 Score = 38.6 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +I RY P + ++ +L + W +A L ++ V Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216 >gi|223985318|ref|ZP_03635394.1| hypothetical protein HOLDEFILI_02700 [Holdemania filiformis DSM 12042] gi|223962719|gb|EEF67155.1| hypothetical protein HOLDEFILI_02700 [Holdemania filiformis DSM 12042] Length = 82 Score = 38.6 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 V+VC + C ++G +++ + + I +K ++ + C C + + Sbjct: 2 VTVEVCIGSACYVKGSNEVVTILQELIKEKGWED----QVNVKGAFCMQVCTQGLGLRVN 57 Query: 154 KDTYEDLTPERLEEIIDA 171 + + E+++ Sbjct: 58 GKQLLGVGLHNVREVLEQ 75 >gi|158339995|ref|YP_001521165.1| iron-sulfur cluster-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310236|gb|ABW31851.1| iron-sulfur cluster-binding protein, putative [Acaryochloris marina MBIC11017] Length = 295 Score = 38.6 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%) Query: 92 TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 R ++ VC ++ C + + +IE + + Q L ++ C C P+V Sbjct: 197 KRPYLSVCRSSRCYPSQDVQPIIEALQTAVQQSGLE------VAVRTSGCLEVCAAGPVV 250 Query: 151 MIGKDT--YEDLTPERLEEIIDAF-STGQGDTIRPGPQIDRISS 191 D Y +TPE I+ + G+ P I +S Sbjct: 251 FYSGDRTWYTRVTPEIAHRIVQEHVAQGRPIQAHVYPPIKTQAS 294 >gi|220909413|ref|YP_002484724.1| hypothetical protein Cyan7425_4049 [Cyanothece sp. PCC 7425] gi|219866024|gb|ACL46363.1| conserved hypothetical protein [Cyanothece sp. PCC 7425] Length = 88 Score = 38.6 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 8/77 (10%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 ++ ++ +C + C G +++ + + L + + C C + ++ Sbjct: 2 SKENLFLCMGSACHQLGVYEVLPRLQALLKTYKLEE----RIELKGSFCLETCSHGIVMK 57 Query: 152 IGKDTYEDLTPERLEEI 168 + +++P+ +E + Sbjct: 58 FRDRHFLNISPQNIETL 74 >gi|88192678|pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment) gi|88192679|pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment) Length = 519 Score = 38.6 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 20 EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 E A +I RY P + ++ +L + W +A L ++ V Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216 >gi|86141877|ref|ZP_01060401.1| ferredoxin-nitrite reductase [Leeuwenhoekiella blandensis MED217] gi|85831440|gb|EAQ49896.1| ferredoxin-nitrite reductase [Leeuwenhoekiella blandensis MED217] Length = 698 Score = 38.6 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 32/160 (20%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75 FS E A + +I +Y + L Q + AI Sbjct: 337 DFSTEKARALAGLIKKYGGDELR------LTLRQNILLRHIPEGAIPF------------ 378 Query: 76 LEIATFYTQ-----FQLSPVGTRAHVQVCGTTP-CML--RGCEKLIEVCRNKIHQKPLHR 127 FY+Q F T + C T C L + + + + ++ Sbjct: 379 -----FYSQLANLGFARPGYETTTDITACPGTDTCNLGIASSTGIADKLEDVLVEEYPEY 433 Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167 ++ ++ + C AC M IG TPE+L Sbjct: 434 LNNKEVTIKISGCMNACGQHNMAHIGFQGMSVRTPEKLVA 473 >gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium roseum DSM 5159] Length = 574 Score = 38.6 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 135 WEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189 +V C G C P V + Y +T +R+ E++DA G +RP + Sbjct: 65 LRQVGCGGWCFAEPFVEVKLPGHPPIVYGWMTTDRVPELLDALRRG---DLRPDWALGVR 121 Query: 190 SSAPAGGLTSLLDNN 204 ++ G+ L ++ Sbjct: 122 AAGAWHGIPPLTEHP 136 >gi|225457464|ref|XP_002265398.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 250 Score = 38.6 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++VC C +G ++ + D ++ + C G C P + + Sbjct: 43 LRVCVNRTCRRQGS---LQTLETLSGIA----SPD--VAVKSCGCLGRCGAGPNLVALPD 93 Query: 154 KDTYEDL-TPERLEEIIDAFSTG 175 T R E++ +F G Sbjct: 94 GVIVGHCGTAARAAEVMMSFVAG 116 >gi|167626932|ref|YP_001677432.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667508|ref|ZP_04755086.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876054|ref|ZP_05248764.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596933|gb|ABZ86931.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842075|gb|EET20489.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 118 Score = 38.6 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 95 HVQVCGTTPCMLRGCEKL----IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148 H+ +C + E + ++ + L + +G + + C C N P Sbjct: 20 HIFLCCDQERQKCCAGDVSLKSWEYLKKRL--QELKLSQNGHIYRSKTYCLRVCQNGPIA 77 Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175 +V Y TPE LE+II G Sbjct: 78 VVQPDNVWYHSCTPEVLEKIIQKHLIG 104 >gi|284038859|ref|YP_003388789.1| ferredoxin [Spirosoma linguale DSM 74] gi|283818152|gb|ADB39990.1| ferredoxin-like protein [Spirosoma linguale DSM 74] Length = 120 Score = 38.6 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 12/87 (13%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + HV +C C +L++ + + R + + C AC Sbjct: 23 KKHVFICNNQKVAPKKSCGEAHGNELVDAFKAALA----ERGLLKEMRAQRTGCLDACAF 78 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P +++ Y ++ + EI+D+ Sbjct: 79 GPTLVVYPEGTYYGNVQLSDVAEIVDS 105 >gi|167761225|ref|ZP_02433352.1| hypothetical protein CLOSCI_03630 [Clostridium scindens ATCC 35704] gi|167660891|gb|EDS05021.1| hypothetical protein CLOSCI_03630 [Clostridium scindens ATCC 35704] Length = 126 Score = 38.6 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 132 TLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIID-AFSTGQGDT 179 +S C G C P+V + K TY +TPE+ E+ + GQ T Sbjct: 64 KISVTPTGCIGLCQYEPIVEVLEPGKDKVTYVKMTPEKAMEVFNLHLKQGQVVT 117 >gi|163846913|ref|YP_001634957.1| hypothetical protein Caur_1340 [Chloroflexus aurantiacus J-10-fl] gi|222524735|ref|YP_002569206.1| hypothetical protein Chy400_1462 [Chloroflexus sp. Y-400-fl] gi|163668202|gb|ABY34568.1| hypothetical protein Caur_1340 [Chloroflexus aurantiacus J-10-fl] gi|222448614|gb|ACM52880.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 83 Score = 38.6 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C RG + + I + L SD ++ CQ C P +++ Sbjct: 3 RIYICLGPHCRGRGAADVHIALEDAIWRAGL---SD-QITCIAGSCQDRCTIGPNLLVYP 58 Query: 153 GKDTYEDLTPERLEEIIDAFS 173 G + +TP + +I + Sbjct: 59 GGRRFHGVTPTEIPTLIAQLA 79 >gi|329905876|ref|ZP_08274259.1| putative ferredoxin [Oxalobacteraceae bacterium IMCC9480] gi|327547447|gb|EGF32268.1| putative ferredoxin [Oxalobacteraceae bacterium IMCC9480] Length = 105 Score = 38.6 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 95 HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 HV +C C RG + + ++++ K L N G + + C C P Sbjct: 10 HVFICMNKREDGRPCCGERGAQAAQKHAKSRL--KALDLNGQGKIRINQSGCLDRCEEGP 67 Query: 149 MVMI 152 +++I Sbjct: 68 VMVI 71 >gi|220907780|ref|YP_002483091.1| hypothetical protein Cyan7425_2372 [Cyanothece sp. PCC 7425] gi|219864391|gb|ACL44730.1| conserved hypothetical protein [Cyanothece sp. PCC 7425] Length = 205 Score = 38.6 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVM 151 + VC + C +G ++ + + + R +++E C G C AP M+M Sbjct: 131 FKILVCQKSGCQKKGAKQQQQRLKTALQ----ERGLSDRVTFESTGCLGKCSMAPNTMLM 186 Query: 152 IGKDTYEDLTPERLEEII 169 GK ++ + ++I Sbjct: 187 PGKKRLSGMSTGAIVDLI 204 >gi|86608806|ref|YP_477568.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557348|gb|ABD02305.1| iron-sulfur cluster-binding protein, putative [Synechococcus sp. JA-2-3B'a(2-13)] Length = 289 Score = 38.6 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%) Query: 92 TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 R ++ VC ++ C R + ++E + + N D + C C P+V Sbjct: 197 KRPYLAVCRSSRCYPSRNYQPVVEALESALR----EANLD--VQVITSGCLEVCQQGPVV 250 Query: 151 MIGKDT--YEDLTPERLEEII 169 D Y+ +TP+ +I+ Sbjct: 251 FYSGDRTWYKRVTPQVARQIV 271 >gi|281422651|ref|ZP_06253650.1| site-specific recombinase, phage integrase family [Prevotella copri DSM 18205] gi|281403321|gb|EFB34001.1| site-specific recombinase, phage integrase family [Prevotella copri DSM 18205] Length = 499 Score = 38.6 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 19/83 (22%) Query: 2 SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPPS-RCQSAVIPLL----------M 47 +R + + +S F + E + ++ +Y R V P++ Sbjct: 324 FLRHKTRDRNESASEVIFPITPE----LKAILDKYGNEPRLGRRVFPIMSDEITPEQEVW 379 Query: 48 RAQEQEGWVSRAAIEVVANILDM 70 Q ++ R ++ VA++L M Sbjct: 380 VIQRYNRYI-REHMKKVADMLGM 401 >gi|303242576|ref|ZP_07329053.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302589880|gb|EFL59651.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 83 Score = 38.2 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIGK 154 V++C + C L+G +I ++ + + + C C N V + Sbjct: 4 VKICIGSSCHLKGSYNVIHEFQHL----VEENSLHDKIDIKAKFCMKQCQNKGVAVEVCN 59 Query: 155 DTYEDLTPERLEE 167 Y L PE EE Sbjct: 60 KVYGIL-PENAEE 71 >gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 630 Score = 38.2 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 13/84 (15%) Query: 98 VCGTTP-C-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155 VC C M G K+ + ++I +K L EV C G C P+V+I K Sbjct: 24 VCVGVATCSMASGALKVKDAFISEIQRKELDA------RVMEVGCMGHCYAEPLVLIKKP 77 Query: 156 -----TYEDLTPERLEEIIDAFST 174 Y L + +E +++ F Sbjct: 78 GFPALLYGKLDEDLVERLVEDFLA 101 >gi|239627944|ref|ZP_04670975.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518090|gb|EEQ57956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 125 Score = 38.2 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 9/94 (9%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 V V T + G ++ + + +S + C G C P+V + Sbjct: 27 HTRVVVGMATCGIAAGARPVLNTLAQE--VQSRGLTD--KISVTQTGCIGLCQYEPIVEV 82 Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 K TY + P++ E+++ G + Sbjct: 83 IEPGKDKITYVKMNPDKALEVMERHLIGGHPVEK 116 >gi|254458740|ref|ZP_05072164.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1] gi|207084506|gb|EDZ61794.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1] Length = 124 Score = 38.2 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160 C+ + L + K+ Q+ + GT+ C C + P++++ G Y L Sbjct: 25 SCVTPQTQDLFQYLATKLMQEGIM----GTVQPIRTSCMNRCSSGPIMLVEPGHTMYAGL 80 Query: 161 TPERLEEIIDAFSTG 175 T E++++II G Sbjct: 81 TKEKIDKIISEHIIG 95 >gi|212696804|ref|ZP_03304932.1| hypothetical protein ANHYDRO_01366 [Anaerococcus hydrogenalis DSM 7454] gi|212676094|gb|EEB35701.1| hypothetical protein ANHYDRO_01366 [Anaerococcus hydrogenalis DSM 7454] Length = 96 Score = 38.2 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 13/89 (14%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCR-------NKIHQKPLHRNSDGTLSWEEVECQGAC--- 144 ++VC C + G + + +++++ L D L E + C C Sbjct: 2 KIEVCAGARCTMLGSDIIFNRLSDFVEEFNDRLYKGELDV-QDIELEIEMITCNDECKKN 60 Query: 145 -VNAPMVMIGKDTYEDLTPERLEE-IIDA 171 NAP+V++ + + E + E I+D Sbjct: 61 KKNAPIVIVNGKVFTNAKTEVIMEYILDK 89 >gi|325982320|ref|YP_004294722.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212] gi|325531839|gb|ADZ26560.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212] Length = 102 Score = 38.2 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 94 AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147 HV C C ++L + + + K L + + C C Sbjct: 6 YHVFFCTNQRDGGAKCCNNFCAQELRDYAKQR--IKSLRLDGKKRIRINNAGCLDRCNEG 63 Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171 P+++I + Y + E ++EIID Sbjct: 64 PVIVIYPEETWYTYIDQEDIDEIIDE 89 >gi|323349366|gb|EGA83590.1| Thi5p [Saccharomyces cerevisiae Lalvin QA23] Length = 282 Score = 38.2 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 22/61 (36%) Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174 + K + L +++ C G C ++ I D + PE++ + + A Sbjct: 109 ELEEYLASKADQASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIKK 168 Query: 175 G 175 Sbjct: 169 A 169 >gi|254442661|ref|ZP_05056137.1| hypothetical protein VDG1235_895 [Verrucomicrobiae bacterium DG1235] gi|198256969|gb|EDY81277.1| hypothetical protein VDG1235_895 [Verrucomicrobiae bacterium DG1235] Length = 131 Score = 38.2 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE----------GWVSRAAIEVVAN 66 FSEE A V + + + PP + S + L Q + G +SRAAIE + + Sbjct: 23 QFSEERAAAVLQTLEKNPPRKYASVLKQFLKLVQREVAKSTADVEHAGSISRAAIEAIQS 82 Query: 67 ILDMAYIRVLEIAT 80 L Y R + + T Sbjct: 83 KLSGHYGRAINVTT 96 >gi|150391800|ref|YP_001321849.1| ferredoxin [Alkaliphilus metalliredigens QYMF] gi|149951662|gb|ABR50190.1| ferredoxin [Alkaliphilus metalliredigens QYMF] Length = 122 Score = 38.2 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%) Query: 86 QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144 + GTR V + C + G ++ ++ ++ L + + C G C Sbjct: 21 RKEKGGTRIVVGMAT---CGIASGARPVMMALIEEVKKRNLE-----HMIVTQTGCIGVC 72 Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEII 169 P+V + K TY D+T E+ ++II Sbjct: 73 KYEPIVEVYREGEDKVTYVDMTVEKAQKII 102 >gi|124265502|ref|YP_001019506.1| putative ferredoxin [Methylibium petroleiphilum PM1] gi|124258277|gb|ABM93271.1| putative ferredoxin [Methylibium petroleiphilum PM1] Length = 107 Score = 38.2 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 95 HVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H+ C C E C+++ K G + + C C P+ Sbjct: 7 HIFFCLNKRDGEAACADHDAEAGFARCKSQ--AKAAGLMGAGKVRVNKAGCLDRCAGGPV 64 Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 ++ Y + ++EI+++ GQ Sbjct: 65 AVVYPEGTWYTYVDAHDIDEIVESHLKHGQ 94 >gi|302393029|ref|YP_003828849.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501] gi|302205106|gb|ADL13784.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501] Length = 121 Score = 38.2 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%) Query: 84 QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 + + V V T + G ++++V +I ++ L D ++ + C G Sbjct: 17 DLKTRKADGKPKVIVGMGTCGIAAGAREIMQVLLEEIDKRKL----DVVVT--QTGCIGM 70 Query: 144 CVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171 C P+V + + TY ++T E II Sbjct: 71 CEKEPLVDVQLSGKNRITYGEVTKEAARRIISE 103 >gi|291286921|ref|YP_003503737.1| cytochrome c oxidase, subunit II [Denitrovibrio acetiphilus DSM 12809] gi|290884081|gb|ADD67781.1| cytochrome c oxidase, subunit II [Denitrovibrio acetiphilus DSM 12809] Length = 402 Score = 38.2 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 16/107 (14%) Query: 101 TTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA---PMVMIGKDT 156 C L G E + ++ ++ + DG ++ E A P I K+ Sbjct: 215 CIDCHSLDGTELVGPTFKDIYGRETVVVTPDGEMTVTADE--KYLETAIYDPSAEIVKN- 271 Query: 157 YEDLTP--------ERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195 YED+ P + L+ +I+ F +G +PG + R+ + G Sbjct: 272 YEDMMPPFKDEMSGDELDTVIEYFKSGGTQVEKPG-EKGRVIAENEG 317 >gi|115379420|ref|ZP_01466521.1| ferredoxin [Stigmatella aurantiaca DW4/3-1] gi|310822414|ref|YP_003954772.1| ferredoxin, 2fe-2S [Stigmatella aurantiaca DW4/3-1] gi|115363559|gb|EAU62693.1| ferredoxin [Stigmatella aurantiaca DW4/3-1] gi|309395486|gb|ADO72945.1| Ferredoxin, 2Fe-2S [Stigmatella aurantiaca DW4/3-1] Length = 116 Score = 38.2 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 33/115 (28%) Query: 95 HVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143 HV VC C +G E++ ++++ K G + C Sbjct: 8 HVFVCTNRRPDGHPKGCCATKGAEEVRAAFKSEMEKRGIK-------GQMRANAAGCIDT 60 Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG-------------QGDTIRPG 183 C V+I Y + E + I+D G +G PG Sbjct: 61 CAMGVSVVIYPEGIWYGGVKTEDVPTIVDEHLLGGKPVERLMMPFMKKGPKPEPG 115 >gi|160936129|ref|ZP_02083502.1| hypothetical protein CLOBOL_01025 [Clostridium bolteae ATCC BAA-613] gi|158440939|gb|EDP18663.1| hypothetical protein CLOBOL_01025 [Clostridium bolteae ATCC BAA-613] Length = 125 Score = 38.2 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 11/97 (11%) Query: 92 TRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H++V C + G ++ +++ QK N +S + C G C P+ Sbjct: 24 DHDHIRVVVGMATCGIAAGARPVLNTLADEV-QKRGLTN---KISVTQTGCIGLCQYEPI 79 Query: 150 VMI-----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 V + K TY + ++ E+++ G + Sbjct: 80 VEVMEPGKDKITYVKMNADKALEVVERHLVGGHPVEK 116 >gi|76801202|ref|YP_326210.1| cobalamin cluster protein CbiX 2 ( ferredoxin-like iron-sulfur protein) [Natronomonas pharaonis DSM 2160] gi|76557067|emb|CAI48641.1| conserved cobalamin cluster protein CbiX 2 (probable ferredoxin-like iron-sulfur protein) [Natronomonas pharaonis DSM 2160] Length = 109 Score = 38.2 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 20/90 (22%) Query: 96 VQVCGTT------PCMLRG--CEKLIEVCRNKIHQKPLHRNSD---GTLSWEEVECQGAC 144 V VC C G E +E + ++ D + +C G C Sbjct: 16 VFVCTNARDSEYAACADAGPGAEATVEAVTEWLRER------DVYWNGVGVSTTDCLGLC 69 Query: 145 ---VNAPMVMIGKDTYEDLTPERLEEIIDA 171 A + + + D+TPE + E++ Sbjct: 70 SEGGTALTIQPHDEWFSDVTPEDVPELLAE 99 >gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia bacterium enrichment culture clone BF] Length = 603 Score = 38.2 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GK---D 155 C + G +K+ + R + P + + C G C N P+V + Sbjct: 22 SCGIAAGAQKVYDAFRQALEGLPA--------ALDFSGCMGMCFNEPLVEVRSPNDGRRY 73 Query: 156 TYEDLTPERLEEII-DAFSTGQ 176 Y + PE +E I+ D GQ Sbjct: 74 IYGKVQPEWVERIVSDHIKNGQ 95 >gi|110637215|ref|YP_677422.1| 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406] gi|110279896|gb|ABG58082.1| possible 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406] Length = 84 Score = 38.2 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMIG 153 + +C + C +++ + + K H D + ++EC C +AP+ V Sbjct: 10 IFICDGSKC--GRHKEVRKHLKEA--IKEHHL-KD-RVEIFKMECSDRCKHAPVLCVQPA 63 Query: 154 KDTYEDLTPERLEEIIDAF 172 + Y ++T ++II Sbjct: 64 NEWYSEVTLRDADKIITDL 82 >gi|221198862|ref|ZP_03571907.1| transposase Tn3 [Burkholderia multivorans CGD2M] gi|221205122|ref|ZP_03578138.1| transposase Tn3 [Burkholderia multivorans CGD2] gi|221174913|gb|EEE07344.1| transposase Tn3 [Burkholderia multivorans CGD2] gi|221181313|gb|EEE13715.1| transposase Tn3 [Burkholderia multivorans CGD2M] Length = 145 Score = 38.2 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPL--LMR---AQEQEGWVSRA 59 RL+E + + F+ ++ +NE R+ R A + L L + G + R Sbjct: 9 RLSEFDVE-RYFALNDSDVAAINE---RFRRDRRAGAAVQLVFLRASGHTLDHVGTLPRQ 64 Query: 60 AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99 + V L + + + T Y +++ V C Sbjct: 65 LLRYVGERLGLPTPSIASLRTLYQRYKTQ---YEHQVWAC 101 >gi|307718059|ref|YP_003873591.1| hypothetical protein STHERM_c03450 [Spirochaeta thermophila DSM 6192] gi|306531784|gb|ADN01318.1| hypothetical protein STHERM_c03450 [Spirochaeta thermophila DSM 6192] Length = 101 Score = 38.2 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLT 161 C RG L ++ + + + D ++ C C P+V+I Y + Sbjct: 24 CARRGSLPLAGYLQSAVEDRGMG---DVVVTL--TGCMNLCEKGPVVVIQPDNLWYGGIE 78 Query: 162 -PERLEEIIDAFSTGQ 176 E ++EI+DA G+ Sbjct: 79 GEEDIDEILDALLEGR 94 >gi|86605795|ref|YP_474558.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab] gi|86554337|gb|ABC99295.1| putative iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab] Length = 289 Score = 37.8 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 92 TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 R ++ VC ++ C R + ++E ++ + N D + C C P+V Sbjct: 197 KRPYLAVCRSSRCYPSRHYQPVVEALQSALR----EANLD--IQVITSGCLEVCQQGPVV 250 Query: 151 MIGKDT--YEDLTPERLEEIIDA 171 D Y+ +TP+ +I+ Sbjct: 251 FYSGDRTWYKRVTPQVARQIVQE 273 >gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] Length = 628 Score = 37.8 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 T+ V +C T C+ G ++ + + +K L + +E C G C +V+ Sbjct: 24 TKPLVAICAGTGCLTLGARLVVRAFQEYLIKKGLE----KEIEIKETGCPGFCEKGTLVV 79 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + Y + + + +I++ Sbjct: 80 VYPRGVYYIGVHQDDVPDIVEE 101 >gi|239979268|ref|ZP_04701792.1| MarR family transcriptional regulator [Streptomyces albus J1074] Length = 140 Score = 37.8 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA--IEVVANILDMAYIR 74 + E + V++RY ++A L AQ G +S A + +A L Sbjct: 8 LTLEVVELIGAVVARYHEEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSN 67 Query: 75 VLEIA 79 V I Sbjct: 68 VTGIV 72 >gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 545 Score = 37.8 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 8/82 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + + T L G +++ E ++ R D ++ E G +++ Sbjct: 6 SHVLISIDANTL--LAGAKEVEEALIRELK----ERGLDKEIAVIETGPLGIIGKGVVMV 59 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + Y ++ E + E+++ Sbjct: 60 VYPEGIYYGNVKVEDIPELVEE 81 >gi|291451146|ref|ZP_06590536.1| MarR-family transcriptional regulator [Streptomyces albus J1074] gi|291354095|gb|EFE80997.1| MarR-family transcriptional regulator [Streptomyces albus J1074] Length = 143 Score = 37.8 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA--IEVVANILDMAYIR 74 + E + V++RY ++A L AQ G +S A + +A L Sbjct: 11 LTLEVVELIGAVVARYHEEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSN 70 Query: 75 VLEIA 79 V I Sbjct: 71 VTGIV 75 >gi|153871803|ref|ZP_02000880.1| ferredoxin 2fe-2s protein [Beggiatoa sp. PS] gi|152071729|gb|EDN69118.1| ferredoxin 2fe-2s protein [Beggiatoa sp. PS] Length = 106 Score = 37.8 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 11/93 (11%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R HV C C + + + + + + DG + C C + Sbjct: 7 RYHVFFCTNQRTEGQRCCQNHNAQAMRDYLKKRTK-ELGIIGRDG-VRANSAGCMDRCKD 64 Query: 147 APMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176 P++++ Y ++EII + G+ Sbjct: 65 GPVMVVYPQGIWYTYKELADIDEIISEHLQNGR 97 >gi|118496732|ref|YP_897782.1| ferredoxin [Francisella tularensis subsp. novicida U112] gi|194324039|ref|ZP_03057814.1| hypothetical protein FTE_0407 [Francisella tularensis subsp. novicida FTE] gi|208779997|ref|ZP_03247340.1| hypothetical protein FTG_1000 [Francisella novicida FTG] gi|254372098|ref|ZP_04987591.1| hypothetical protein FTCG_01239 [Francisella tularensis subsp. novicida GA99-3549] gi|254375245|ref|ZP_04990725.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548] gi|118422638|gb|ABK89028.1| ferredoxin [Francisella novicida U112] gi|151569829|gb|EDN35483.1| hypothetical protein FTCG_01239 [Francisella novicida GA99-3549] gi|151572963|gb|EDN38617.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548] gi|194321936|gb|EDX19419.1| hypothetical protein FTE_0407 [Francisella tularensis subsp. novicida FTE] gi|208744001|gb|EDZ90302.1| hypothetical protein FTG_1000 [Francisella novicida FTG] gi|328676187|gb|AEB27057.1| Ferredoxin, 2Fe-2S [Francisella cf. novicida Fx1] Length = 117 Score = 37.8 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 + C C K E + ++ + L + +G + + C C N P Sbjct: 18 QKHIFLCCDQERQKCCAGDVSLKAWEYLKKRL--QELGLSQNGHIYRTKTYCLRICQNGP 75 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 + ++ Y TPE LEEII G G+ ++ Sbjct: 76 IAVVHPDNVWYHSCTPEVLEEIIQKHLIG-GEIVK 109 >gi|145338641|ref|NP_188394.2| binding [Arabidopsis thaliana] gi|9294156|dbj|BAB02058.1| unnamed protein product [Arabidopsis thaliana] gi|332642467|gb|AEE75988.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 236 Score = 37.8 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++VC C +G +++E + L C G C + P + + Sbjct: 21 IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTHCACLGRCGSGPNLVALPQ 71 Query: 154 KDTYED-LTPERLEEIIDAF 172 TP R EI+ + Sbjct: 72 GLILRHCATPSRAAEILFSL 91 >gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum] Length = 2707 Score = 37.8 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR +EE++P +F++ V +++++Y R ++ + A + + VS A IE Sbjct: 1745 RRREDEEYRPDELAFNKSEYFKVEKLLAQYGWGRWKA-----MREASDLKESVSEADIEH 1799 Query: 64 VANIL 68 ++ L Sbjct: 1800 ISRTL 1804 >gi|159468552|ref|XP_001692438.1| predicted protein [Chlamydomonas reinhardtii] gi|158278151|gb|EDP03916.1| predicted protein [Chlamydomonas reinhardtii] Length = 119 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%) Query: 86 QLSPVGTRAHVQVCGTTP--CMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVEC 140 +L+ G + T C K + + ++ + + C Sbjct: 9 RLATPGRHLFLCSDQTVAKCCSKADGIKSWDYLKKRCKELGLEGGEV----PFWRTKANC 64 Query: 141 QGACVNAPMVMIGKD--------TYEDLTPERLEEIIDAFSTG 175 C P+ ++ + Y TPE LE I+ G Sbjct: 65 LRVCAMGPVAVVYPEQARACACVYYHSCTPEVLERILQEHIIG 107 >gi|324500342|gb|ADY40163.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum] Length = 1811 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Query: 4 RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63 RR +EE++P +F++ V +++++Y R ++ + A + + VS A IE Sbjct: 1709 RRREDEEYRPDELAFNKSEYFKVEKLLAQYGWGRWKA-----MREASDLKESVSEADIEH 1763 Query: 64 VANIL 68 ++ L Sbjct: 1764 ISRTL 1768 >gi|296114463|ref|ZP_06833116.1| hypothetical protein GXY_01746 [Gluconacetobacter hansenii ATCC 23769] gi|295978819|gb|EFG85544.1| hypothetical protein GXY_01746 [Gluconacetobacter hansenii ATCC 23769] Length = 190 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%) Query: 87 LSPVGTRAHVQVCGTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 P H+ VC T L G ++ L R D + EV+C AC Sbjct: 65 TRPDLRAIHLHVCVTCLRGLPVGAAPPGRALYEQM----LTRTHDTNVVVHEVKCLAACD 120 Query: 146 N---APMVMIG--KDTYEDLTPERLEEI---IDAFSTGQGDTIRP 182 A + M G L PE+ +++ + A++T ++ P Sbjct: 121 RGCTAVVAMPGKWGWLLGHLGPEKADDLMIYLAAYATSHSGSVMP 165 >gi|332642468|gb|AEE75989.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 244 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++VC C +G +++E + L C G C + P + + Sbjct: 21 IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTHCACLGRCGSGPNLVALPQ 71 Query: 154 KDTYED-LTPERLEEIIDAF 172 TP R EI+ + Sbjct: 72 GLILRHCATPSRAAEILFSL 91 >gi|327440532|dbj|BAK16897.1| uncharacterized conserved protein [Solibacillus silvestris StLB046] Length = 398 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 H+ +C CM G E++ + R++I + L D + C G C + V+I Sbjct: 12 HLLICNGATCMGAGAEEVTKQIRDEIRKNRL----DEMIHTSRTRCNGRCKDK-CVVIDY 66 Query: 154 --KDTYEDLTPERLEEIIDA 171 Y E I+ Sbjct: 67 PKGTWYSVQDEETSRAIVQD 86 >gi|149195162|ref|ZP_01872253.1| ferredoxin, 2Fe-2S [Caminibacter mediatlanticus TB-2] gi|149134714|gb|EDM23199.1| ferredoxin, 2Fe-2S [Caminibacter mediatlanticus TB-2] Length = 111 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Query: 103 PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTY 157 C+ G E L+ + K + P T C C P++++ G Y Sbjct: 25 SCVRVGKEDLLPFTQQKMMELGIDP------MTNWIVPTGCLNRCNFGPVMLVEPGSYMY 78 Query: 158 EDLTPERLEEIIDA 171 L E++E I+ Sbjct: 79 VGLDKEKIERILKE 92 >gi|46202422|ref|ZP_00053240.2| COG3411: Ferredoxin [Magnetospirillum magnetotacticum MS-1] Length = 111 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%) Query: 82 YTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEE 137 Y F Q P G H + C C +G + N++ K N D +S Sbjct: 8 YHAFVCTQRRPDG---HPRGC----CTSKGG---GQNLFNQLAMKVSELNLWDKGVSVAS 57 Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 C G C P++++ Y+ T ++EI+ + R Sbjct: 58 SSCLGFCKAGPLMVVYPQGIWYKTETTADIDEIVTSHFANDTPVER 103 >gi|332799827|ref|YP_004461326.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Tepidanaerobacter sp. Re1] gi|332697562|gb|AEE92019.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Tepidanaerobacter sp. Re1] Length = 124 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 16/86 (18%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148 T+ V V T + G ++ +++ + + G C G C P Sbjct: 29 TKTRVVVGMGTCGIAAGARAVMLAILDELKKRNIDDVIVTETG--------CIGLCQYEP 80 Query: 149 MVMI----GKDT-YEDLTPERLEEII 169 +V + Y ++TPE+ E++ Sbjct: 81 LVDVIKPDNPKVTYVNMTPEKAREVV 106 >gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] Length = 598 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEE 167 +K+ + +I + L + C G C P+V++ Y +T ++E Sbjct: 22 DKIYDAFLKEIEAQNLKD----EVQVIHTGCFGLCAEGPIVIVYPEGAFYSKVTDSDVKE 77 Query: 168 IIDA 171 I++ Sbjct: 78 IVEE 81 >gi|262196905|ref|YP_003268114.1| hypothetical protein Hoch_3721 [Haliangium ochraceum DSM 14365] gi|262080252|gb|ACY16221.1| hypothetical protein Hoch_3721 [Haliangium ochraceum DSM 14365] Length = 164 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 21/96 (21%) Query: 93 RAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 R ++VC C LR + + E +I + ++ + C G C+ P V Sbjct: 2 RFEIRVCSGPYCAGLRDADAVSERFTERIAESGRQERAE----VQRWRCFGRCMLGPNVH 57 Query: 152 I---------GKDT-------YEDLTPERLEEIIDA 171 + D Y ++ + ++EI++ Sbjct: 58 VRDLQASAAEDGDPPRRVSALYHGVSRDDVDEILEK 93 >gi|307150744|ref|YP_003886128.1| NADH dehydrogenase [Cyanothece sp. PCC 7822] gi|306980972|gb|ADN12853.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822] Length = 99 Score = 37.4 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 91 GTR-AHVQVCGTTPCMLRGCEKLIEVCR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 G V VC C ++G K++ + D TL CQG C +P Sbjct: 4 GEHQRCVMVCQHQSCQVQGAAKVLLAFHMADL--------PDDTL-VMPTGCQGQCSTSP 54 Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185 V I + Y + + I++ G+ + P+ Sbjct: 55 TVRIIPEEIWYCRVQSTDVPLIVEQHLKGGKPVKEKLHPR 94 >gi|300866732|ref|ZP_07111414.1| putative iron-sulfur cluster-binding protein [Oscillatoria sp. PCC 6506] gi|300335238|emb|CBN56574.1| putative iron-sulfur cluster-binding protein [Oscillatoria sp. PCC 6506] Length = 299 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%) Query: 92 TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 R ++ VC ++ C R + +IE + + + + + C C P+V Sbjct: 197 KRPYISVCRSSRCHPSRNWQPIIEALQTAVKE------AGMDVYVMTSGCLEVCKMGPVV 250 Query: 151 MIGKDT--YEDLTPERLEEII 169 D Y +TP + I+ Sbjct: 251 FYSGDRTWYTRVTPAIAQRIV 271 >gi|114776823|ref|ZP_01451866.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1] gi|114552909|gb|EAU55340.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1] Length = 105 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 9/88 (10%) Query: 92 TRAHVQVCGTTPCMLRGCEKL--IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 R + C C E L + + ++ + L + C G C P+ Sbjct: 10 KRHAIMCC-GKSC----GENLPLLNYLKKRVAEAGLIMGDPDAVRVNRAGCLGVCCEGPI 64 Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175 +++ Y L ++ I++ G Sbjct: 65 MVVHPEGVWYCHLDEAGIDRIVNEHFRG 92 >gi|262370041|ref|ZP_06063368.1| magnesium and cobalt efflux protein [Acinetobacter johnsonii SH046] gi|262315080|gb|EEY96120.1| magnesium and cobalt efflux protein [Acinetobacter johnsonii SH046] Length = 279 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + + P +R LL Q+ ++ + ++ +LD+ +V E+ T Sbjct: 14 LRKWLGTAPETRD-----ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63 >gi|224064764|ref|XP_002301551.1| predicted protein [Populus trichocarpa] gi|222843277|gb|EEE80824.1| predicted protein [Populus trichocarpa] Length = 350 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154 +++C C G L+E KI + +C G C+ P V + Sbjct: 246 KIEICMGGKCRKLGAAALLEEFERKIGMESA---------VVGCKCMGKCMKGPNVRVFN 296 Query: 155 DTYED 159 T E+ Sbjct: 297 CTVEN 301 >gi|50083671|ref|YP_045181.1| magnesium and cobalt efflux protein [Acinetobacter sp. ADP1] gi|49529647|emb|CAG67359.1| magnesium and cobalt efflux protein [Acinetobacter sp. ADP1] Length = 279 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 + + + P +R LL Q+ ++ + ++ +LD+ +V E+ T Sbjct: 14 LRKWLGTAPETRD-----ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63 >gi|326791480|ref|YP_004309301.1| NADP-reducing hydrogenase subunit B [Clostridium lentocellum DSM 5427] gi|326542244|gb|ADZ84103.1| NADP-reducing hydrogenase subunit B [Clostridium lentocellum DSM 5427] Length = 132 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 14/100 (14%) Query: 85 FQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140 L G ++V T + G ++ ++ + L + + C Sbjct: 21 IDLREKGDHVDQMIVIRVAMATCGIAAGARDIMNYFSEEVRARGL-----NNIVLTQSGC 75 Query: 141 QGACVNAPMVMI---GKD--TYEDLTPERLEEIIDAFSTG 175 G C P V I GK+ Y D+ R EI++ G Sbjct: 76 MGYCYAEPTVEITIPGKEPVVYGDVNKARAAEILEKHIIG 115 >gi|90416647|ref|ZP_01224577.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207] gi|90331400|gb|EAS46636.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207] Length = 124 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Query: 93 RAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACVNAPMV 150 R H+ +C C E + + + L + DG + +VEC C P++ Sbjct: 20 RQHLLICTAGKCAPAEQTSDAWEYLKRR--IRELELLDVDGGVYRSKVECLRICRQGPIM 77 Query: 151 M--IGKDTYEDLTPERLEEIIDAFSTG 175 + Y TPE +E I+ G Sbjct: 78 VSYPDGTWYHSCTPEVIERILQEHVLG 104 >gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] Length = 574 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDR 188 ++ E C G C P++++ Y + + EI+ + G+ T + + Sbjct: 16 EVAVVETGCHGLCALGPIMIVYPDATFYSMVQVNDIPEIVSEHLLKGRVVT----RLLYQ 71 Query: 189 ISSAPAGGLTSLLDNNSKKR 208 + +P GG+ +L+D + K+ Sbjct: 72 ETVSPTGGIKALIDTDFYKK 91 >gi|94967165|ref|YP_589213.1| ferredoxin-like [Candidatus Koribacter versatilis Ellin345] gi|94549215|gb|ABF39139.1| Ferredoxin-like protein [Candidatus Koribacter versatilis Ellin345] Length = 133 Score = 37.4 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 20/114 (17%) Query: 81 FYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNS 129 F+ + P + V +C C G +L ++ + K+ + + Sbjct: 8 FFFRIGTMPKFQKH-VFICQNQRPAEHHRGSCDPGGTGELQKIFKKKLADHGIRGDQVRA 66 Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDTIR 181 + + C C + P V++ + Y + ++EII++ G R Sbjct: 67 NKS------GCLEQCEHGPTVVVYPEAVWYGGVQAADVDEIIESHILGGKPVER 114 >gi|308809065|ref|XP_003081842.1| kinesin-like calmodulin binding protein (ISS) [Ostreococcus tauri] gi|116060309|emb|CAL55645.1| kinesin-like calmodulin binding protein (ISS) [Ostreococcus tauri] Length = 1220 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAI- 61 R +E +F + ++ YP SR SA++ L Q +EG +V A Sbjct: 346 RETDESITEPTFILLSYVQAKHDFLMGNYPLSRDDSALLAALQ-VQAEEGPRFVDDPAAL 404 Query: 62 -EVVANIL 68 + +A L Sbjct: 405 GQTLAKYL 412 >gi|330821338|ref|YP_004350200.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3] gi|327373333|gb|AEA64688.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3] Length = 210 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 15/71 (21%) Query: 17 SFSEESAIWVNEVISRYP----------PSRCQSAVIPLLMRAQEQEGWVS-RAAIEVVA 65 + +A + E I R+ + + A++ L +G++ R A+E++A Sbjct: 140 TLDPANAEAIRERIDRFAMTLATTPRSLKTEQRRALMQELKD----DGYLEVRRAMEIIA 195 Query: 66 NILDMAYIRVL 76 L ++ V Sbjct: 196 QHLGVSRATVY 206 >gi|209525017|ref|ZP_03273561.1| conserved hypothetical protein [Arthrospira maxima CS-328] gi|209494426|gb|EDZ94737.1| conserved hypothetical protein [Arthrospira maxima CS-328] Length = 92 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + ++ +C + C G +++ + I + L + + C C + ++ Sbjct: 2 AKQNLYLCMGSACHQMGVYEVLPKLQELIAEYQLE----NRIELKGSFCLETCSSGIVMK 57 Query: 152 IGKDTYEDLTPERLEE 167 + +++P+ +E+ Sbjct: 58 YQDQHFINISPKNIED 73 >gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 604 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 14/74 (18%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157 C + G +K+ ++ ++ K S +E C G C P+V +I + Y Sbjct: 11 SCGIAAGAKKVYDLFSDEAQSKA---------SVQETGCVGMCFKEPLVEVIDNEGRFIY 61 Query: 158 EDLTPERLEEIIDA 171 D+ ++ ++II+ Sbjct: 62 GDVDEKKAQQIIED 75 >gi|145351791|ref|XP_001420246.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580480|gb|ABO98539.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1109 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG 54 R A+E ++F + ++ YP SR +A++ L Q +EG Sbjct: 272 RDADETIDETTFVLLSYVQAKHDFMMGNYPISRDDAALLAALQ-VQAEEG 320 >gi|325106379|ref|YP_004276033.1| hypothetical protein Pedsa_3682 [Pedobacter saltans DSM 12145] gi|324975227|gb|ADY54211.1| hypothetical protein Pedsa_3682 [Pedobacter saltans DSM 12145] Length = 101 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 + +C + C RG ++ + ++ + L + +EC C AP++ Sbjct: 23 HVIYICTGSKCSKRGGKECYKTLKSFLKDSKLRD----KIELVRIECTDRCKFAPVL 75 >gi|229494111|ref|ZP_04387874.1| putative cobalamin [Rhodococcus erythropolis SK121] gi|229318473|gb|EEN84331.1| putative cobalamin [Rhodococcus erythropolis SK121] Length = 233 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 H+ VC CM G L G C C P+V+ Sbjct: 151 HLLVCKGPRCMAYGAGPLHRAMSAAAKGTSAKVTGTG--------CLSPCNLGPLVIANP 202 Query: 154 -KDTYEDLTPERLEEIIDA 171 + + E ++ Sbjct: 203 GGTWFGHVDAGDAEALVAG 221 >gi|254430975|ref|ZP_05044678.1| ferredoxin [Cyanobium sp. PCC 7001] gi|197625428|gb|EDY37987.1| ferredoxin [Cyanobium sp. PCC 7001] Length = 120 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175 +C C P++++ Y +TPER+E I+ G Sbjct: 54 ADCLRICAEGPVLLVWPEGIVYGGVTPERIERIVREHVVG 93 >gi|237508186|ref|ZP_04520901.1| YheO domain protein [Burkholderia pseudomallei MSHR346] gi|235000391|gb|EEP49815.1| YheO domain protein [Burkholderia pseudomallei MSHR346] Length = 214 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63 +E PSS E ++ P + + A++ L EG++ R ++E Sbjct: 142 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 197 Query: 64 VANILDMAYIRVL 76 VA L ++ V Sbjct: 198 VAQHLGVSRATVY 210 >gi|167907944|ref|ZP_02495149.1| hypothetical protein BpseN_37301 [Burkholderia pseudomallei NCTC 13177] Length = 210 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63 +E PSS E ++ P + + A++ L EG++ R ++E Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193 Query: 64 VANILDMAYIRVL 76 VA L ++ V Sbjct: 194 VAQHLGVSRATVY 206 >gi|167899628|ref|ZP_02487029.1| hypothetical protein Bpse7_38195 [Burkholderia pseudomallei 7894] gi|167924137|ref|ZP_02511228.1| hypothetical protein BpseBC_36603 [Burkholderia pseudomallei BCC215] gi|217422173|ref|ZP_03453676.1| conserved hypothetical protein [Burkholderia pseudomallei 576] gi|217394404|gb|EEC34423.1| conserved hypothetical protein [Burkholderia pseudomallei 576] Length = 210 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63 +E PSS E ++ P + + A++ L EG++ R ++E Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193 Query: 64 VANILDMAYIRVL 76 VA L ++ V Sbjct: 194 VAQHLGVSRATVY 206 >gi|134278284|ref|ZP_01764998.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|254184549|ref|ZP_04891138.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|134250068|gb|EBA50148.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|184215141|gb|EDU12122.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] Length = 214 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63 +E PSS E ++ P + + A++ L EG++ R ++E Sbjct: 142 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 197 Query: 64 VANILDMAYIRVL 76 VA L ++ V Sbjct: 198 VAQHLGVSRATVY 210 >gi|53723078|ref|YP_112063.1| hypothetical protein BPSS2061 [Burkholderia pseudomallei K96243] gi|167821178|ref|ZP_02452858.1| hypothetical protein Bpse9_38998 [Burkholderia pseudomallei 91] gi|52213492|emb|CAH39539.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] Length = 210 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63 +E PSS E ++ P + + A++ L EG++ R ++E Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193 Query: 64 VANILDMAYIRVL 76 VA L ++ V Sbjct: 194 VAQHLGVSRATVY 206 >gi|218131555|ref|ZP_03460359.1| hypothetical protein BACEGG_03175 [Bacteroides eggerthii DSM 20697] gi|217986487|gb|EEC52824.1| hypothetical protein BACEGG_03175 [Bacteroides eggerthii DSM 20697] Length = 528 Score = 37.0 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 19/83 (22%) Query: 2 SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPP-SRCQSAVIPLL----------M 47 +R E + +S F + E + E+++RY + V P++ Sbjct: 353 FLRHKTRERNESASEVIFPVTPE----IQEILNRYGNVPKLGRRVFPIMSELITPEQEIW 408 Query: 48 RAQEQEGWVSRAAIEVVANILDM 70 Q ++ R + VA +LDM Sbjct: 409 VIQRYNRYI-REHMAKVAKLLDM 430 >gi|260774106|ref|ZP_05883021.1| pseudouridylate synthase LSU rRNA-specific [Vibrio metschnikovii CIP 69.14] gi|260611067|gb|EEX36271.1| pseudouridylate synthase LSU rRNA-specific [Vibrio metschnikovii CIP 69.14] Length = 557 Score = 37.0 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 9 EEFQPSSFSFSEES--AIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52 + F P++F FS E+ +N+ I++ S +SA+I L QEQ Sbjct: 105 DRFTPAAF-FSAEANHIAEINQQINQLMHSEQRSALIEALQACQEQ 149 >gi|284050509|ref|ZP_06380719.1| hypothetical protein AplaP_03432 [Arthrospira platensis str. Paraca] gi|291570286|dbj|BAI92558.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 92 Score = 37.0 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + ++ +C + C G +++ + I + L + + C C + ++ Sbjct: 2 AKQNLYLCMGSACHQMGVYEVLPKLQELIAEYKLES----RIELKGSFCLETCSSGIVMK 57 Query: 152 IGKDTYEDLTPERLEE 167 + +++P+ +E+ Sbjct: 58 YQDQHFINISPKNIED 73 >gi|113474666|ref|YP_720727.1| putative iron-sulfur cluster-binding protein [Trichodesmium erythraeum IMS101] gi|110165714|gb|ABG50254.1| putative iron-sulfur cluster-binding protein [Trichodesmium erythraeum IMS101] Length = 291 Score = 37.0 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 10/94 (10%) Query: 85 FQLSPVGTRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143 F +P+ R ++ VC ++ C R + + E + + S+ + C Sbjct: 191 FNSNPL-KRPYLSVCRSSRCYPSRKWQPIFEALQTAVK------TSELDIDVITSGCLEV 243 Query: 144 CVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTG 175 C P+V + Y +T + + I++ G Sbjct: 244 CKMGPVVFYSADRTWYTRVTSDVAKRIVNEHLLG 277 >gi|152990003|ref|YP_001355725.1| 2Fe-2S ferredoxin [Nitratiruptor sp. SB155-2] gi|151421864|dbj|BAF69368.1| 2Fe-2S ferredoxin [Nitratiruptor sp. SB155-2] Length = 128 Score = 37.0 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 C C P++++ G Y L ++++ II+ G Sbjct: 59 TGCLNRCQLGPVMLVEPGHYMYVGLDKQKIDRIIEEHIIG 98 >gi|300866263|ref|ZP_07110974.1| putative ferredoxin [Oscillatoria sp. PCC 6506] gi|300335734|emb|CBN56134.1| putative ferredoxin [Oscillatoria sp. PCC 6506] Length = 155 Score = 37.0 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 95 HVQVC--GTTP--CMLRGCEKLIEVCRNKIHQ----KPLHRNSDGTLSWEEVECQGACVN 146 H+ +C T P C + + ++ + KP + C C N Sbjct: 44 HIFICADQTVPKCCDKEASLEAWNYLKKRLQELKLDKPSGDRPSCIFR-TKANCLRVCSN 102 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+++I Y ++TP +E I+ G Sbjct: 103 GPIMVIYPDGVWYRNVTPPIIERILQEHLIG 133 >gi|297830392|ref|XP_002883078.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328918|gb|EFH59337.1| binding protein [Arabidopsis lyrata subsp. lyrata] Length = 236 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153 ++VC C +G +++E + L C G C + P + + Sbjct: 21 IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTPCACLGRCGSGPNLVALPQ 71 Query: 154 KDTYED-LTPERLEEIIDAF 172 TP R EI+ + Sbjct: 72 GLILRHCATPSRAAEILFSL 91 >gi|298385934|ref|ZP_06995491.1| hypothetical protein HMPREF9007_02650 [Bacteroides sp. 1_1_14] gi|298261162|gb|EFI04029.1| hypothetical protein HMPREF9007_02650 [Bacteroides sp. 1_1_14] Length = 499 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 19/86 (22%) Query: 2 SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPP----SRCQSAVI-PLL------M 47 +R E + +S F + E + E+++RY R ++ LL Sbjct: 324 FLRHKTRERNESASEVIFPVTPE----IQEILNRYGNVPKLGRRVFPIMNELLSPEQEIW 379 Query: 48 RAQEQEGWVSRAAIEVVANILDMAYI 73 Q ++ R + VA +L+M + Sbjct: 380 VIQRYNRYI-REHMAKVAKLLEMEQM 404 >gi|256828646|ref|YP_003157374.1| ferredoxin, 2fe-2s [Desulfomicrobium baculatum DSM 4028] gi|256577822|gb|ACU88958.1| ferredoxin, 2fe-2s [Desulfomicrobium baculatum DSM 4028] Length = 100 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 138 VECQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176 C C P++++ + E ++ I+D G+ Sbjct: 51 TGCMKLCEKGPVMVVQPDNWWFGGVSSEEAIDAILDGIEAGE 92 >gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 96 VQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAP 148 V VCG T C+ G ++ + + I + + + ++ C G C P Sbjct: 27 VLVCGGTGCVAGGALEVYDEIKRLIEERGLLAQVELYE--EERGIGVKKSGCHGFCEAGP 84 Query: 149 MVMI--GKDTYEDLTPERLEEIID 170 +V I + Y + E +EI++ Sbjct: 85 LVRIEPDQFLYLKVKREDCKEIVE 108 >gi|53749491|gb|AAU90344.1| Putative TPR domain containing protein, identical [Solanum demissum] Length = 265 Score = 37.0 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149 + +++C C +G ++V P ++ C G C P + Sbjct: 48 RKIEIRLCTERACRKQGSLDTLQVLS---GIAP------PFVAVNSCGCLGRCGAGPNVV 98 Query: 150 VMIGKDTYEDL-TPERLEE 167 V+ G + + TP R E Sbjct: 99 VLPGAVYVKHVGTPTRAAE 117 >gi|302036602|ref|YP_003796924.1| putative [2Fe-2S] ferredoxin [Candidatus Nitrospira defluvii] gi|300604666|emb|CBK40998.1| putative [2Fe-2S] ferredoxin [Candidatus Nitrospira defluvii] Length = 116 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 22/96 (22%) Query: 90 VGTRAHVQVCGT--------TPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEV 138 G + H+ VC C G + L + +++ K G + + Sbjct: 2 TGYQRHIFVCTNKREPDDPRGSCSKLGSDALHACFKQEAKRLNLK-------GVVRANKA 54 Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPE-RLEEIIDA 171 C C P V++ Y +T E ++EI++ Sbjct: 55 GCLDYCAQGPTVVVYPEGIWY-RVTSEADVKEIMER 89 >gi|167588401|ref|ZP_02380789.1| hypothetical protein BuboB_23869 [Burkholderia ubonensis Bu] Length = 210 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 38 CQSAVIPLLMRAQEQEGWVS-RAAIEVVANILDMAYIRVL 76 + A++ L ++EG++ R ++E +A L ++ V Sbjct: 171 QRRALMQAL----KEEGYLDLRRSMETIAQHLGVSRATVY 206 >gi|156094788|ref|XP_001613430.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802304|gb|EDL43703.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1504 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 F+ E + ++ +I RY V+ ++ ++ + + I +A IL ++ Sbjct: 1226 KFALIESNYNLLHRIIERY--------VLYVIELINDENRAIYKENIFRLAAILRVSPAV 1277 Query: 75 VLEIAT 80 + EIAT Sbjct: 1278 IDEIAT 1283 >gi|291530732|emb|CBK96317.1| Ferredoxin [Eubacterium siraeum 70/3] Length = 122 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + V T + G +++ + I +K + + + C G C P+V + Sbjct: 28 TRIVVGMATCGIAAGARPVLKAFSDGIQEKGIK-----DVMVIQEGCIGLCQYEPVVEVI 82 Query: 153 ----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 K TY ++T E+ E+I+ G + Sbjct: 83 TPGKEKVTYVNMTSEKAVEVIEQHIIGGNVVTK 115 >gi|238025065|ref|YP_002909297.1| hypothetical protein bglu_2g17210 [Burkholderia glumae BGR1] gi|237879730|gb|ACR32062.1| Hypothetical protein bglu_2g17210 [Burkholderia glumae BGR1] Length = 210 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 15/71 (21%) Query: 17 SFSEESAIWVNEVISRYP----------PSRCQSAVIPLLMRAQEQEGWVS-RAAIEVVA 65 + +A + E I R+ + + ++ L EG++ R A+EV+A Sbjct: 140 TLDPANADAIRERIDRFAMTLATTPRSLKTEQRRELMQAL----RAEGYLEVRRAMEVIA 195 Query: 66 NILDMAYIRVL 76 L ++ V Sbjct: 196 QHLGVSRATVY 206 >gi|167772591|ref|ZP_02444644.1| hypothetical protein ANACOL_03970 [Anaerotruncus colihominis DSM 17241] gi|167665069|gb|EDS09199.1| hypothetical protein ANACOL_03970 [Anaerotruncus colihominis DSM 17241] Length = 123 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 133 LSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171 ++ + C G C P+V + K TY +TPE+ ++ Sbjct: 62 VTIAQTGCIGICQYEPVVEVFEPGREKVTYVKMTPEKAARVVAE 105 >gi|166368456|ref|YP_001660729.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843] gi|166090829|dbj|BAG05537.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843] Length = 151 Score = 37.0 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%) Query: 92 TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIH-QKPLHRNSD--GTLSWEEVECQGACV 145 R C T C ++ + + ++ + ++D G + + C C Sbjct: 23 QRHLFLCCDQTKPKCCDKEEGLEVWDYLKKRLSELQLDRPSADRPGCIFRTKANCLRVCS 82 Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176 P++++ Y + E +E II G Sbjct: 83 QGPILLVYPEGVWYGRVNKEAIERIIQEHLIGN 115 >gi|291521597|emb|CBK79890.1| Ferredoxin [Coprococcus catus GD/7] Length = 124 Score = 37.0 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 135 WEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171 + C G C P+V + K TY +TPE+ +E+++ Sbjct: 65 VTQTGCIGLCQYEPIVEVYEPGKEKVTYIKMTPEKADEVVEQ 106 >gi|77164556|ref|YP_343081.1| Fe2-S2-type ferredoxin [Nitrosococcus oceani ATCC 19707] gi|254434912|ref|ZP_05048420.1| hypothetical protein NOC27_1843 [Nitrosococcus oceani AFC27] gi|76882870|gb|ABA57551.1| Fe2-S2-type ferredoxin [Nitrosococcus oceani ATCC 19707] gi|207091245|gb|EDZ68516.1| hypothetical protein NOC27_1843 [Nitrosococcus oceani AFC27] Length = 104 Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 10/87 (11%) Query: 93 RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 R HV C C + + K K L + C C Sbjct: 7 RYHVFFCTNQRDDGRPCCQNHDALAIRNYAKEK--VKALGLARRRQVRINTAGCLNRCAQ 64 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P +++ Y + + ++EII Sbjct: 65 GPAIVVYPEGTWYTYTSRKDIDEIITE 91 >gi|262380039|ref|ZP_06073194.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens SH164] gi|262298233|gb|EEY86147.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens SH164] Length = 279 Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 LL Q+ ++ + ++ +LD+ +V E+ T Sbjct: 27 ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63 >gi|255319678|ref|ZP_05360886.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens SK82] gi|255303207|gb|EET82416.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens SK82] Length = 269 Score = 36.6 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 18/37 (48%) Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80 LL Q+ ++ + ++ +LD+ +V E+ T Sbjct: 17 ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 53 >gi|194677133|ref|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos taurus] gi|297488689|ref|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [Bos taurus] gi|296474940|gb|DAA17055.1| ubiquitin specific peptidase 19 [Bos taurus] Length = 1238 Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G +D Sbjct: 806 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSDRD 863 >gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1] Length = 519 Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 13/84 (15%) Query: 99 CGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153 C + + G ++++E + + + +S G E C +A G Sbjct: 8 CDSVARAV-GADQVVEALQREAERRQLPLDIQRTSSRGLYWLEP---LIECDSA----QG 59 Query: 154 KDTYEDLTPERLEEIIDAFSTGQG 177 + + +TP+ + ++DA + G Sbjct: 60 RQGFGPVTPQDVPSLLDALAGDPG 83 >gi|254498714|ref|ZP_05111430.1| ferredoxin 2Fe-2S protein [Legionella drancourtii LLAP12] gi|254352042|gb|EET10861.1| ferredoxin 2Fe-2S protein [Legionella drancourtii LLAP12] Length = 74 Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 ++ G + + C G C + P ++I Y + ++EIID+ Sbjct: 7 ELGIHG-----PGNVRVSKSGCLGRCGSGPCIVIYPEGVWYSYASFADIDEIIDS 56 >gi|289209468|ref|YP_003461534.1| ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix] gi|288945099|gb|ADC72798.1| putative ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix] Length = 101 Score = 36.6 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 95 HVQVC-----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149 H+ C C G ++ +++ K + + G + C C P+ Sbjct: 7 HIFFCTNCREDGNCCEDHGATEMRAYAKDR--AKAMGIHGKGQVRVNTAGCLDRCNEGPV 64 Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176 ++ Y ++EI++ G+ Sbjct: 65 AVVYPEGVWYTYHDERDIDEILEEHLKNGR 94 >gi|319787150|ref|YP_004146625.1| Integrase catalytic region [Pseudoxanthomonas suwonensis 11-1] gi|317465662|gb|ADV27394.1| Integrase catalytic region [Pseudoxanthomonas suwonensis 11-1] Length = 466 Score = 36.6 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 23/121 (19%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64 RL ++E PS +F+ + A E I+R R S + P +Q+ +R +E + Sbjct: 51 RLLQDELTPSPHAFTGDLARISEEEIAR--ALRQYSVLAPF--ISQKA----TREDVERL 102 Query: 65 ANILDMAYIRVLE------IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118 A L++ + A +T P G C L E + V Sbjct: 103 AKELELKRAHIYGQLSKLRAAPHFTTLIRRPRG--------RGKGCSLV-SEAVDRVIEK 153 Query: 119 K 119 + Sbjct: 154 Q 154 >gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 545 Score = 36.6 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + + + T L G +++ E ++ Q+ L D ++ E G +++ Sbjct: 6 SHVLISIDANTL--LAGAKEVEEALIRELKQRGL----DKEIAVIETGPLGIIGKGVVMV 59 Query: 152 I--GKDTYEDLTPERLEEIIDA 171 + Y ++ E + E+++ Sbjct: 60 VYPEGIYYGNVKLEDVPELVEE 81 >gi|167750763|ref|ZP_02422890.1| hypothetical protein EUBSIR_01741 [Eubacterium siraeum DSM 15702] gi|167656198|gb|EDS00328.1| hypothetical protein EUBSIR_01741 [Eubacterium siraeum DSM 15702] gi|291557756|emb|CBL34873.1| Ferredoxin [Eubacterium siraeum V10Sc8a] Length = 122 Score = 36.6 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152 + V T + G +++ + I +K + + + C G C P+V + Sbjct: 28 TRIVVGMATCGIAAGARPVLKAFSDGIQEKGIK-----DVMVIQEGCIGLCQYEPVVEVI 82 Query: 153 ----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 K TY ++T E+ E+I+ G + Sbjct: 83 TPGKEKVTYVNMTSEKAVEVIEQHIIGGNVVTK 115 >gi|282877306|ref|ZP_06286137.1| RNA polymerase sigma-70 factor [Prevotella buccalis ATCC 35310] gi|281300584|gb|EFA92922.1| RNA polymerase sigma-70 factor [Prevotella buccalis ATCC 35310] Length = 188 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 13/80 (16%) Query: 8 EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLM------RAQEQEGWVSRAAI 61 EE FSEE + VIS+ P R + + L AQ +S+ + Sbjct: 105 PEENSLEEMIFSEELKAILENVISKMPDQRRRVFTMSRLQGMTNQKIAQAL--HISKRTV 162 Query: 62 E-VVANILDMAYIRVLEIAT 80 E ++ L ++ + T Sbjct: 163 ETHISAAL----AQIRRVVT 178 >gi|226304589|ref|YP_002764547.1| hypothetical protein RER_11000 [Rhodococcus erythropolis PR4] gi|226183704|dbj|BAH31808.1| hypothetical protein RER_11000 [Rhodococcus erythropolis PR4] Length = 233 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153 H+ VC CM G L G C C P+V+ Sbjct: 151 HLLVCKGPRCMAYGAGPLHRAMSAAAKGTSSKVTGTG--------CLSPCNLGPLVIANP 202 Query: 154 -KDTYEDLTPERLEEIIDA 171 + + E ++ Sbjct: 203 GGTWFGHVDAGDAEALVAG 221 >gi|317152741|ref|YP_004120789.1| ferredoxin, 2Fe-2S [Desulfovibrio aespoeensis Aspo-2] gi|316942992|gb|ADU62043.1| ferredoxin, 2Fe-2S [Desulfovibrio aespoeensis Aspo-2] Length = 99 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Query: 140 CQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176 C C + P++++ + E ++ I+D G+ Sbjct: 53 CLKQCESGPIMVVQPENWWFKGVASEEAIDAILDGLEAGE 92 >gi|125550768|gb|EAY96477.1| hypothetical protein OsI_18375 [Oryza sativa Indica Group] Length = 416 Score = 36.6 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 ++VC C G +++ K+ +DG + +C G C P V Sbjct: 321 RIEVCMGGKCKKSGSLAVLQEFEKKVG-------TDGAV--VGCKCLGKCGLGPNV 367 >gi|319935286|ref|ZP_08009724.1| hypothetical protein HMPREF9488_00555 [Coprobacillus sp. 29_1] gi|319809694|gb|EFW06095.1| hypothetical protein HMPREF9488_00555 [Coprobacillus sp. 29_1] Length = 127 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 13/74 (17%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRA---QEQEG-WVSRAAIEVVANILDMAYI 73 FS+E + ++I+ YP +P L + E ++ + L + + Sbjct: 34 FSDEKVAFAEKLIASYPTK------VPALAKFCMESECFKACYPDETMDTIMEKLHLPDM 87 Query: 74 RVL---EIATFYTQ 84 R+ I T+Y Sbjct: 88 RIDNIGGILTYYNH 101 >gi|242277918|ref|YP_002990047.1| ferredoxin, 2Fe-2S [Desulfovibrio salexigens DSM 2638] gi|242120812|gb|ACS78508.1| ferredoxin, 2Fe-2S [Desulfovibrio salexigens DSM 2638] Length = 100 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%) Query: 135 WEEVECQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176 C C N P++++ + E ++EI+D G+ Sbjct: 48 VVATSCLKQCDNGPILVVQPENWWFKGVDSEEAIDEILDGLEDGE 92 >gi|113955308|ref|YP_730132.1| ferredoxin [Synechococcus sp. CC9311] gi|113882659|gb|ABI47617.1| Ferredoxin [Synechococcus sp. CC9311] Length = 111 Score = 36.6 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 V+C C P++++ Y +TPER+ I+ Sbjct: 57 VDCLRICDQGPILLVWPDGTWYRGVTPERISSILQR 92 >gi|317969176|ref|ZP_07970566.1| ferredoxin [Synechococcus sp. CB0205] Length = 117 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175 +C CV P+++I Y +T ER+E I+ G Sbjct: 59 ADCLRICVEGPVLLIWPEGIVYGGVTAERVERILKEHVIG 98 >gi|304310519|ref|YP_003810117.1| putative metal ion transporter [gamma proteobacterium HdN1] gi|301796252|emb|CBL44460.1| putative metal ion transporter [gamma proteobacterium HdN1] Length = 279 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79 + +S ++ +L AQE G + A ++ + ++ ++V EI Sbjct: 25 EPQDKSELLEMLHSAQE-NGLIDPEATNIIHGAMQVSEMQVWEIM 68 >gi|116073143|ref|ZP_01470405.1| putative ferredoxin like protein [Synechococcus sp. RS9916] gi|116068448|gb|EAU74200.1| putative ferredoxin like protein [Synechococcus sp. RS9916] Length = 136 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEII 169 V+C C P+++I Y ++PER++ I+ Sbjct: 63 VDCLRVCEQGPVLLIWPDGIWYGGVSPERMDIIL 96 >gi|194221326|ref|XP_001498305.2| PREDICTED: similar to ubiquitin specific peptidase 19 isoform 1 [Equus caballus] Length = 1237 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G ++D Sbjct: 805 SRLTYARLAQLLEGYARFSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 862 >gi|33861699|ref|NP_893260.1| hypothetical protein PMM1143 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640067|emb|CAE19602.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 109 Score = 36.6 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEI 168 V+C C N P+++I YE ++PE++ EI Sbjct: 54 VDCLRICKNGPILLIWPDGIWYEKVSPEKVSEI 86 >gi|301770391|ref|XP_002920596.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Ailuropoda melanoleuca] Length = 1222 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G ++D Sbjct: 790 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 847 >gi|281338356|gb|EFB13940.1| hypothetical protein PANDA_009359 [Ailuropoda melanoleuca] Length = 1359 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G ++D Sbjct: 890 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 947 >gi|303275552|ref|XP_003057070.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461422|gb|EEH58715.1| predicted protein [Micromonas pusilla CCMP1545] Length = 447 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R+ V+VC C+ G ++ + + P + C G C A +V + Sbjct: 236 RSSVEVCTGKACLRAGAGSVMRAVQENL--PPGWSCAGKK-------CMGMCERATVVRV 286 Query: 153 GKD 155 D Sbjct: 287 TSD 289 >gi|157364374|ref|YP_001471141.1| NADP-reducing hydrogenase, subunit B [Thermotoga lettingae TMO] gi|157314978|gb|ABV34077.1| NADP-reducing hydrogenase, subunit B [Thermotoga lettingae TMO] Length = 125 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 86 QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145 QL G R + V T + G + ++ + + + ++ + C G C Sbjct: 22 QLRDAGKRGKITVAMGTCGIAAGAKDTLKAIVEALDENNI-----NDIAVVQSGCMGLCE 76 Query: 146 NAPMVMIGKD-----TYEDLTPERLEEIID 170 P V + + Y + E + I+ Sbjct: 77 VEPTVEVRIEGQEPVVYGHVNSENAKRIVK 106 >gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] Length = 571 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 ++ C G C P++++ Y + E + EI++ Sbjct: 13 EVNVVRTGCFGLCALGPIMIVYPEGAFYSMVKVEDVPEIVEE 54 >gi|115461971|ref|NP_001054585.1| Os05g0137300 [Oryza sativa Japonica Group] gi|46485797|gb|AAS98422.1| unknown protein [Oryza sativa Japonica Group] gi|113578136|dbj|BAF16499.1| Os05g0137300 [Oryza sativa Japonica Group] gi|215695454|dbj|BAG90615.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630119|gb|EEE62251.1| hypothetical protein OsJ_17038 [Oryza sativa Japonica Group] Length = 409 Score = 36.6 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 ++VC C G +++ K+ +DG + +C G C P V Sbjct: 321 RIEVCMGGKCKKSGSLAVLQEFEKKVG-------TDGAV--VGCKCLGKCGLGPNV 367 >gi|160935015|ref|ZP_02082401.1| hypothetical protein CLOLEP_03891 [Clostridium leptum DSM 753] gi|156866468|gb|EDO59840.1| hypothetical protein CLOLEP_03891 [Clostridium leptum DSM 753] Length = 123 Score = 36.3 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%) Query: 132 TLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171 ++ + C G C P+V + K TY +TPE+ +++ Sbjct: 62 KVAVTQTGCIGICQYEPVVEVLVPGQEKVTYVKMTPEKAVRVVND 106 >gi|149919839|ref|ZP_01908315.1| hypothetical protein PPSIR1_12078 [Plesiocystis pacifica SIR-1] gi|149819286|gb|EDM78719.1| hypothetical protein PPSIR1_12078 [Plesiocystis pacifica SIR-1] Length = 121 Score = 36.3 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 8/64 (12%) Query: 92 TRAHVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPL--HRNSDGTLSWEEVECQGACVNAP 148 R + VC C + E L+E ++ ++ R L+ C G C P Sbjct: 8 KRFQILVCDGPSCGITHESETLVEHIEGRLDKEAALQGRAECAALT-----CFGRCDEGP 62 Query: 149 MVMI 152 +MI Sbjct: 63 NLMI 66 >gi|296281993|ref|ZP_06859991.1| RNA polymerase factor sigma-54 [Citromicrobium bathyomarinum JL354] Length = 495 Score = 36.3 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%) Query: 41 AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 A+I L A G++ + VA L + V Sbjct: 159 ALIDRLDMA----GYLPDP-LREVAEALGVPLAEVE 189 >gi|126696671|ref|YP_001091557.1| ferredoxin [Prochlorococcus marinus str. MIT 9301] gi|126543714|gb|ABO17956.1| Ferredoxin [Prochlorococcus marinus str. MIT 9301] Length = 116 Score = 36.3 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 90 VGTRAHVQVCGTTP---CMLRG-CEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144 G H+ +C T C +K E + + + + + + + +C C Sbjct: 3 KGVHKHLLLCATPTKQKCFKGNEGQKAWECMKKTLKKFENDPSTKNVHILRSKADCLRVC 62 Query: 145 VNAPMVMI--GKDTYEDLTPERLEEI 168 N P+++I YE ++PE++ EI Sbjct: 63 KNGPILLIWPDGIWYEKISPEKISEI 88 >gi|325860491|ref|ZP_08173602.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482018|gb|EGC85040.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 485 Score = 36.3 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 19/83 (22%) Query: 2 SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPPSRCQSA-VIPLL----------M 47 +R + + +S F + E + +++ +Y V P++ Sbjct: 311 FLRHKTRDRNESASEVIFPITPE----LQKILDKYGNKPELGKRVFPIMSEFITPEKEVW 366 Query: 48 RAQEQEGWVSRAAIEVVANILDM 70 Q ++ R + +A +LDM Sbjct: 367 VIQRYNRYI-REHMAKIAELLDM 388 >gi|268315674|ref|YP_003289393.1| alkylhydroperoxidase like protein, AhpD family [Rhodothermus marinus DSM 4252] gi|262333208|gb|ACY47005.1| alkylhydroperoxidase like protein, AhpD family [Rhodothermus marinus DSM 4252] Length = 182 Score = 36.3 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74 S E+ + E R P + ++ E+ GW+ A++ + + Sbjct: 79 GMGLSPETVDAILE--GRLPEDERLALLVEATRAVLERRGWLDEDALQKL-EARGLDRAA 135 Query: 75 VLEIA 79 + EI Sbjct: 136 LYEII 140 >gi|33865231|ref|NP_896790.1| putative ferredoxin like protein [Synechococcus sp. WH 8102] gi|33638915|emb|CAE07212.1| putative ferredoxin like protein [Synechococcus sp. WH 8102] Length = 114 Score = 36.3 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%) Query: 94 AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146 H+ +C T C + ++ + R +G + +V+C C Sbjct: 8 HHLLLCATPTKAKCCDPNTGLATWNELKRLIKELGLENSDR-PEGVVLRSKVDCLRICDK 66 Query: 147 APMVMI--GKDTYEDLTPERLEE 167 P++++ Y D+T E++E Sbjct: 67 GPILVVWPDGIWYTDVTTEKIEA 89 >gi|330505811|ref|YP_004382680.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01] gi|328920097|gb|AEB60928.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01] Length = 230 Score = 36.3 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 14/105 (13%) Query: 86 QLSPVGTRA----------HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135 + PV + +C C +G L + R ++ +G + Sbjct: 117 DVPPVPAHHAWSQIPPHAQRLLLCNGPRCTRKGALGLWKTLRQRLK-AAGRLECEGGVHI 175 Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG 177 +CQ C P + + Y + ++D G+ Sbjct: 176 TRSQCQFPCDLGPTASLYPQGEWYGIRDEAAVIRLVDERLVAGRA 220 >gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 36.3 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179 ++ E C G C P++++ Y + P + EI+ + G+ T Sbjct: 16 EVAVVETGCHGLCALGPIMIVYPDATFYSMVQPGDIPEIVSEHLLKGRVVT 66 >gi|124514247|gb|EAY55761.1| probable ferredoxin [Leptospirillum rubarum] gi|206602859|gb|EDZ39340.1| Probable ferredoxin [Leptospirillum sp. Group II '5-way CG'] Length = 86 Score = 36.3 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%) Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTP 162 M +G E L + H L D ++ + C C PMV++ Y + Sbjct: 1 MGKGNEDL--KLLTQSHIVSLGLEKDILVT--KTGCLDQCEYGPMVLLYPEGTWYSGMDE 56 Query: 163 ERLEEIIDAFSTGQGDTIR 181 + + +++ G+ R Sbjct: 57 KSVRTLVEQIRDGKELLPR 75 >gi|269838920|ref|YP_003323612.1| hypothetical protein Tter_1884 [Thermobaculum terrenum ATCC BAA-798] gi|269790650|gb|ACZ42790.1| hypothetical protein Tter_1884 [Thermobaculum terrenum ATCC BAA-798] Length = 170 Score = 36.3 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 18/39 (46%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 ++PE+ E++++A G+ P P+ GG Sbjct: 15 GRISPEQAEQLLEALEEGERAAPTPRPEPPGFQQERIGG 53 >gi|94263849|ref|ZP_01287654.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1] gi|94266906|ref|ZP_01290561.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1] gi|93452406|gb|EAT03020.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1] gi|93455770|gb|EAT05941.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1] Length = 101 Score = 36.3 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Query: 140 CQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176 C C + P+++I + E ++ I+D G+ Sbjct: 53 CLKQCDSGPIMVIQPENWWFKGVDSEEAIDAILDGLEDGE 92 >gi|294677585|ref|YP_003578200.1| hypothetical protein RCAP_rcc02049 [Rhodobacter capsulatus SB 1003] gi|2407198|gb|AAB70521.1| ORF378 [Rhodobacter capsulatus] gi|3128330|gb|AAC16182.1| hypothetical protein [Rhodobacter capsulatus SB 1003] gi|294476405|gb|ADE85793.1| protein of unknown function DUF1636 [Rhodobacter capsulatus SB 1003] Length = 125 Score = 36.3 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 22/89 (24%) Query: 94 AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--------LSWEEVECQGACV 145 C T + +P + ++ VEC AC Sbjct: 6 HVCTTCRGTA---------AAPLAEEAGPRPGELLAHALSALPVPEGVTVVPVECLSACT 56 Query: 146 NAPMVMIGK-----DTYEDLTPERLEEII 169 V + Y L P + I+ Sbjct: 57 QGCAVALSGPGKWSYVYGRLDPRDADTIL 85 >gi|212212920|ref|YP_002303856.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212] gi|212011330|gb|ACJ18711.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212] Length = 132 Score = 36.3 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 93 RAHVQVC---GTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 R H+ +C C + + + + ++ L +G + + C C P Sbjct: 22 RHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICCQGP 79 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175 + ++ Y TP +E II G Sbjct: 80 IAVVYPDGIWYHSCTPAVIERIIQEHFIG 108 >gi|291393659|ref|XP_002713461.1| PREDICTED: ubiquitin thioesterase 19 isoform 2 [Oryctolagus cuniculus] Length = 1360 Score = 36.3 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G ++D Sbjct: 891 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDNERD 948 >gi|302340163|ref|YP_003805369.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Spirochaeta smaragdinae DSM 11293] gi|301637348|gb|ADK82775.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein [Spirochaeta smaragdinae DSM 11293] Length = 130 Score = 35.9 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--- 148 + V T + G ++ ++ ++ +K ++ + C G C P Sbjct: 28 KNIQIIVGMGTCGIAAGAKETLDAFLQELDEK--KLTDKVMVT--QTGCMGLCYVEPTVE 83 Query: 149 MVMIG--KDTYEDLTPERLEEIIDAFSTGQG 177 ++M Y + E +I+ G+ Sbjct: 84 VIMPDMPDVIYGKVDAEVARKIVRKHIQGKA 114 >gi|29653927|ref|NP_819619.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493] gi|153209536|ref|ZP_01947432.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177'] gi|154706703|ref|YP_001424820.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111] gi|161831414|ref|YP_001596517.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331] gi|165923931|ref|ZP_02219763.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334] gi|212218791|ref|YP_002305578.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154] gi|29541190|gb|AAO90133.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493] gi|120575329|gb|EAX31953.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177'] gi|154355989|gb|ABS77451.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111] gi|161763281|gb|ABX78923.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331] gi|165916623|gb|EDR35227.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334] gi|212013053|gb|ACJ20433.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154] Length = 132 Score = 35.9 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 93 RAHVQVC---GTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148 R H+ +C C + + + + ++ L +G + + C C P Sbjct: 22 RHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICCQGP 79 Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175 + ++ Y TP +E II G Sbjct: 80 IAVVYPDGIWYHSCTPAVIERIIQEHFIG 108 >gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ] Length = 572 Score = 35.9 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152 R + VC TPC+ G E ++ R ++ + L CQG C P++ + Sbjct: 21 RLRLMVCCGTPCVAAGAEAVMAALRERLA----SLGNPADLELVGTGCQGPCSRGPLLTM 76 Query: 153 -----GKDTYEDLTPERLEEIIDA 171 + +E TPE I++A Sbjct: 77 LRPGQPEQVWEKSTPELAVSILEA 100 >gi|78779623|ref|YP_397735.1| hypothetical protein PMT9312_1240 [Prochlorococcus marinus str. MIT 9312] gi|78713122|gb|ABB50299.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 116 Score = 35.9 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Query: 93 RAHVQVCGTTP---CMLRG-CEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147 H+ +C T C +K E + + + + + + + +C C N Sbjct: 6 HKHLLLCATPTKQKCFKSNEGQKTWESLKKTLKKFENDPSTKNFHILRSKADCLRICKNG 65 Query: 148 PMVMI--GKDTYEDLTPERLEEI 168 P++++ YE ++PE++ EI Sbjct: 66 PILLVWPDGIWYEKVSPEKISEI 88 >gi|291393657|ref|XP_002713460.1| PREDICTED: ubiquitin thioesterase 19 isoform 1 [Oryctolagus cuniculus] Length = 1322 Score = 35.9 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214 LT RL ++++ ++ +P Q R++ G G T+LL +S + G ++D Sbjct: 890 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDNERD 947 >gi|160902191|ref|YP_001567772.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160359835|gb|ABX31449.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 124 Score = 35.9 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 5/41 (12%) Query: 135 WEEVECQGACVNAPMVMIGK-----DTYEDLTPERLEEIID 170 + C G C P V + + Y ++T ++++++ Sbjct: 62 VIKTGCLGYCYAEPTVEVNEPGKEPVLYGNVTKSKVKDLVK 102 >gi|284097317|ref|ZP_06385453.1| Sucraseferredoxin-like protein [Candidatus Poribacteria sp. WGA-A3] gi|283831191|gb|EFC35165.1| Sucraseferredoxin-like protein [Candidatus Poribacteria sp. WGA-A3] Length = 75 Score = 35.9 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%) Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171 +P ++ C G C P V++ Y + E + I+D Sbjct: 11 GIQPGEV----LVT--GSTCLGPCEQGPTVVVYPDGIWYSQVKEEHVPLILDE 57 >gi|167755793|ref|ZP_02427920.1| hypothetical protein CLORAM_01308 [Clostridium ramosum DSM 1402] gi|167704732|gb|EDS19311.1| hypothetical protein CLORAM_01308 [Clostridium ramosum DSM 1402] Length = 122 Score = 35.9 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151 + V V T + G ++ + Q+ L + C G C P+V Sbjct: 26 QKYRVVVGMATCGIAAGARPVLNTLVETVAQEKLPAT------VLQTGCIGMCTLEPIVE 79 Query: 152 I-----GKDTYEDLTPERL----------EEIIDAFSTG 175 + K TY + P + +EIID ++ G Sbjct: 80 VFDRDDNKTTYVLVNPAKAKEIAEKHLKHDEIIDEYTVG 118 >gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 582 Score = 35.9 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 12/83 (14%) Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGK----DT 156 C + G K+ V + +I + L + + C G C P+V +I + +T Sbjct: 9 SCGIAAGANKVYSVLKEQIEHRNLD------IELKSTGCIGMCYLEPIVDLIDENGHKET 62 Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179 + + + I+ A + QG++ Sbjct: 63 FVKVDGDMANAIVAAIAERQGNS 85 >gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 649 Score = 35.9 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 T+ + C G C N P+V + Y + + EI+ + G Sbjct: 93 TVQVKRTSCHGFCENGPVVHVEPEGTFYTKVQASDVPEIVASHLVG 138 >gi|125571728|gb|EAZ13243.1| hypothetical protein OsJ_03166 [Oryza sativa Japonica Group] Length = 375 Score = 35.9 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 18/27 (66%) Query: 5 RLAEEEFQPSSFSFSEESAIWVNEVIS 31 RL EE + +F F++ES W++ +IS Sbjct: 25 RLKEEMLEDPAFEFTDESLQWIDRIIS 51 >gi|108757981|ref|YP_630941.1| ferredoxin-related protein [Myxococcus xanthus DK 1622] gi|108461861|gb|ABF87046.1| ferredoxin-related protein [Myxococcus xanthus DK 1622] Length = 114 Score = 35.9 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 26/104 (25%) Query: 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-- 155 +C + C G + + R+ + + L C G C P V++ +D Sbjct: 1 MCKGSSCKAGGADAVYAEARDALSGQGLVP----RCELYRGGCYGFCHMGPNVVVREDTG 56 Query: 156 --------------------TYEDLTPERLEEIIDAFSTGQGDT 179 Y +T E++ ++ Sbjct: 57 RKRDPLSPEDYQLMGWPGEVYYSAMTTEKMRRVVAEHIAKDAPV 100 >gi|110637125|ref|YP_677332.1| ferrodoxin [Cytophaga hutchinsonii ATCC 33406] gi|110279806|gb|ABG57992.1| ferrodoxin [Cytophaga hutchinsonii ATCC 33406] Length = 101 Score = 35.5 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 12/87 (13%) Query: 93 RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 + HV +C C L+E+ + +I ++ L + + C C N Sbjct: 4 KKHVFICTNERPNGKECCGEERGMALVELFKKEIRERKLAV----DIRAQRAGCIDVCAN 59 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171 P +++ Y + P + EI+++ Sbjct: 60 GPALVVYPEGVFYGKVEPADVAEIVES 86 >gi|296284853|ref|ZP_06862851.1| ferredoxin, 2Fe-2S, putative [Citromicrobium bathyomarinum JL354] Length = 128 Score = 35.5 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 95 HVQVC----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG----TLSWEEVECQGACVN 146 H+ +C C ++ + ++ + + + D + + +C C Sbjct: 25 HIFLCALPEKAKCCDRAQGKESWNYLKKRLKELRIGPSKDDGQDLLVRRTKADCLQICDA 84 Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175 P+ ++ Y TPE LEEII G Sbjct: 85 GPIALVQPDGVWYHSCTPEVLEEIIQQHLIG 115 >gi|218658335|ref|ZP_03514265.1| sulfolipid biosynthesis protein [Rhizobium etli IE4771] Length = 210 Score = 35.5 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187 Y DL+P + + +ID + G+ R G ++ Sbjct: 77 IYGDLSPNKWDGLIDDYRAGRPVAPRAGTEVH 108 >gi|121534127|ref|ZP_01665952.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] gi|121307230|gb|EAX48147.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] Length = 121 Score = 35.5 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 14/88 (15%) Query: 91 GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150 G + V T + G +++ ++I ++ L ++ + C G C V Sbjct: 23 GAGTQIIVGMGTCGIAAGAREVMAAILDEIAKRKLQ-----DVTVRQTGCIGMCEKE--V 75 Query: 151 MIG-------KDTYEDLTPERLEEIIDA 171 ++ + TY + + +II Sbjct: 76 LVDVIRPGEPRITYGKVKVADVPKIIAE 103 >gi|323484500|ref|ZP_08089866.1| hypothetical protein HMPREF9474_01617 [Clostridium symbiosum WAL-14163] gi|323692561|ref|ZP_08106794.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402278|gb|EGA94610.1| hypothetical protein HMPREF9474_01617 [Clostridium symbiosum WAL-14163] gi|323503427|gb|EGB19256.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 125 Score = 35.1 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 131 GTLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181 G + + C G C P+V + K TY + PE+ E+++ G + Sbjct: 61 GKVIVTQTGCIGLCQYEPIVEVMEPGKEKVTYIKMNPEKAAEVVERHLIGGHPVEK 116 >gi|322711618|gb|EFZ03191.1| ankyrin repeat protein [Metarhizium anisopliae ARSEF 23] Length = 218 Score = 35.1 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 41 AVIPLLMR------AQEQEGWVSRAAIEVVA--NILDMAYIRVLEIATFYTQFQLSPVGT 92 +++PLL AQ++ G+ + + A N LD+ VLE F+ + Sbjct: 15 SLLPLLRENPNLAAAQDEHGY---SLLHAAASYNHLDLLRALVLE---FHVDVNMKDEDD 68 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V T + +V ++ H+ +DG Sbjct: 69 ETALFVVETL--------EAAKVLVEELGIDAHHQGADGM 100 >gi|84687977|ref|ZP_01015841.1| putative periplasmic thiol-disulphide interchange protein (DsbA family protein) [Maritimibacter alkaliphilus HTCC2654] gi|84664009|gb|EAQ10509.1| putative periplasmic thiol-disulphide interchange protein (DsbA family protein) [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 35.1 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 17/28 (60%) Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175 P +I + Y ++T + L++I+D + G Sbjct: 195 PTFIINGEKYSNMTYDDLKKILDGLAEG 222 >gi|322692997|gb|EFY84876.1| ankyrin repeat-containing protein [Metarhizium acridum CQMa 102] Length = 218 Score = 35.1 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 41 AVIPLLMR------AQEQEGWVSRAAIEVVA--NILDMAYIRVLEIATFYTQFQLSPVGT 92 +++PLL AQ++ G+ + + A N LD+ VLE F+ + Sbjct: 15 SLLPLLRENPDLAAAQDEHGY---SLLHAAASYNHLDLLRALVLE---FHVDVNMKDEDN 68 Query: 93 RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132 + V T + +V ++ H+ +DG Sbjct: 69 ETALFVVETL--------EAAKVLVEELGIDAHHKGADGM 100 >gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 638 Score = 34.7 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 13/95 (13%) Query: 92 TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV----ECQGACVNA 147 + + VC + C+ G ++ E + I +D ++ V C G C Sbjct: 35 AKGEIVVCHGSGCLAAGAAQVAEALESAIAA------ADLDVAVRPVVKITGCHGFCSCG 88 Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179 P+V+I Y+ + P EEI+ ++ G+ T Sbjct: 89 PLVVIHPEGIFYQKVQPSDAEEIVQESLINGRPVT 123 >gi|309791536|ref|ZP_07686037.1| hypothetical protein OSCT_1988 [Oscillochloris trichoides DG6] gi|308226425|gb|EFO80152.1| hypothetical protein OSCT_1988 [Oscillochloris trichoides DG6] Length = 121 Score = 34.7 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Query: 95 HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152 + +C C G ++ + + D + CQ C + P+V + Sbjct: 22 CLAICAGKKCAKAGSTLILHAAQTALQ----EVGLDSSTRIVLTRCQDQCEDGPVVTVVP 77 Query: 153 GKDTYEDLTPERLEEII 169 G Y ++ + + I+ Sbjct: 78 GGYPYLNMRSQDMRPIV 94 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.168 0.533 Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,984,882,781 Number of Sequences: 14124377 Number of extensions: 250963007 Number of successful extensions: 651153 Number of sequences better than 10.0: 3107 Number of HSP's better than 10.0 without gapping: 3642 Number of HSP's successfully gapped in prelim test: 1456 Number of HSP's that attempted gapping in prelim test: 640541 Number of HSP's gapped (non-prelim): 5213 length of query: 218 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 85 effective length of database: 2,964,251,489 effective search space: 251961376565 effective search space used: 251961376565 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 79 (34.7 bits)