BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (218 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 218

 Score =  454 bits (1169), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA
Sbjct: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI
Sbjct: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI
Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS
Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218


>gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 203

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/202 (86%), Positives = 188/202 (93%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA
Sbjct: 1   MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI
Sbjct: 61  IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I
Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           RPGPQIDRISSAPAGGLTSL++
Sbjct: 181 RPGPQIDRISSAPAGGLTSLVE 202


>gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894]
          Length = 322

 Score =  340 bits (873), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 182/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDRI SAP GGLTSL     K + + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGLTSLTTEEPKAKTRAKKTD 215


>gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42]
 gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
          Length = 385

 Score =  340 bits (871), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDRI SAP GG TSL     K R + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215


>gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512]
          Length = 385

 Score =  340 bits (871), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDRI SAP GG TSL     K R + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215


>gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 388

 Score =  339 bits (869), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDR+ SAP GGLTSL     K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGLTSLTTEEPKARTRAKKAD 215


>gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 388

 Score =  336 bits (862), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+++A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDR+ SAP GG TSL     K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGPTSLTTEEPKVRARAKKAD 215


>gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 388

 Score =  336 bits (861), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 180/215 (83%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDRI SAP GG TSL     K R + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKAD 215


>gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
           radiobacter K84]
 gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
           radiobacter K84]
          Length = 381

 Score =  330 bits (847), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 147/213 (69%), Positives = 180/213 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+F++E+A+W  + I +YP  R QSA+IPL+MRAQEQEGWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMA+IR LE+ATFYTQFQL+PVGT+AH+QVCGTTPCMLRG E L++VC++KI
Sbjct: 61  IETIADMLDMAHIRALEVATFYTQFQLNPVGTKAHIQVCGTTPCMLRGAEGLVKVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +     RN+DGTLSWEEVECQGACVNAPMV+IGKDTYEDLTPERLEEIIDAFS G+G  +
Sbjct: 121 NGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFSAGEGSKV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
             GPQIDR+ SAP GGLTSL     K +    K
Sbjct: 181 PTGPQIDRVFSAPEGGLTSLTTEAPKAKSASGK 213


>gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1]
 gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1]
          Length = 345

 Score =  330 bits (846), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 172/204 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+VRRLA+E  QP  F+F+ E+  W +  I +YPP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MAVRRLADEAVQPQGFAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +LDM  IRVLE+ATFYTQFQL+PVGTRAHVQVCGTTPCMLRG   LIEVC+++I
Sbjct: 61  IEHVAKMLDMPLIRVLEVATFYTQFQLAPVGTRAHVQVCGTTPCMLRGAGDLIEVCKSRI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P H N  GTLSWEEVECQGACVNAPM+MI KD+YEDLTPERLEEIIDAF  G+GDTI
Sbjct: 121 HPEPFHTNEGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
           +PG QIDR++SAPA GLTSL D +
Sbjct: 181 KPGTQIDRLTSAPASGLTSLTDES 204


>gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58]
 gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
           str. C58]
          Length = 369

 Score =  327 bits (839), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 148/202 (73%), Positives = 170/202 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP +F+F+ ++  W  + I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  PLH N  GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F  G+GDT+
Sbjct: 121 HHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           + GPQIDR  S P GGLT+L +
Sbjct: 181 KTGPQIDRHESVPVGGLTTLTE 202


>gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
 gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
          Length = 369

 Score =  325 bits (834), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 170/202 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP +F+F+ ++  W  + I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61  IEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  PLH N  GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F  G+GDT+
Sbjct: 121 HHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           + GPQIDR  S P GGLT+L +
Sbjct: 181 KTGPQIDRHQSVPVGGLTTLTE 202


>gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4]
 gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
          Length = 266

 Score =  324 bits (831), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 148/208 (71%), Positives = 176/208 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP+SF+FSEE+A+W    I +YP  R QSAVIPLLMRAQEQ+GWV++A 
Sbjct: 1   MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA+ LDM YIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+L+++C+ KI
Sbjct: 61  IEFVADKLDMPYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELMKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +PL RNS GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIIDAF  G+G  +
Sbjct: 121 HPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFEAGKGVEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           + GPQI+R+ SAP GGLTSL +  +  R
Sbjct: 181 KTGPQIERVFSAPEGGLTSLTEEITPVR 208


>gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3]
          Length = 195

 Score =  323 bits (829), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 171/195 (87%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAG 195
           +PG QIDRI SAP G
Sbjct: 181 KPGTQIDRIFSAPEG 195


>gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021]
 gi|307301094|ref|ZP_07580863.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
 gi|8473988|sp|P56909|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName:
           Full=NADH dehydrogenase I subunit E 1; AltName:
           Full=NDH-1 subunit E 1
 gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021]
 gi|306904049|gb|EFN34635.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
          Length = 275

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/221 (67%), Positives = 175/221 (79%), Gaps = 5/221 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180

Query: 181 RPGPQIDRISSAPAGGLTSL-----LDNNSKKRGKKKKDDK 216
            PGPQIDR+ SAP GGLT+L     ++     R  K KD++
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKSVRASKAKDEQ 221


>gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234]
 gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234]
          Length = 276

 Score =  319 bits (817), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/210 (70%), Positives = 171/210 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I++YP  R QSA+IPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L MAYIR LE+ATFYTQFQL PVG+RAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61  IESIADMLGMAYIRALEVATFYTQFQLKPVGSRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   N  GTLSWEEVECQGACVNAPMVMI KD+YEDLTPERLEEIID F  G+G  I
Sbjct: 121 AADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFDAGKGAEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
            PGPQIDRI SAPAGGLT+L    + +R K
Sbjct: 181 EPGPQIDRIYSAPAGGLTTLQLVEAPQRTK 210


>gi|307317828|ref|ZP_07597266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti]
 gi|306896590|gb|EFN27338.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
          Length = 276

 Score =  318 bits (814), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/222 (67%), Positives = 174/222 (78%), Gaps = 6/222 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLL------DNNSKKRGKKKKDDK 216
            PGPQIDR+ SAP GGLT+L       +     R  K KD++
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKKPVRASKAKDEQ 222


>gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419]
 gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
           WSM419]
          Length = 273

 Score =  316 bits (810), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 173/219 (78%), Gaps = 3/219 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61  IEKIADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 AGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFEAGKGTDV 180

Query: 181 RPGPQIDRISSAPAGGLTSL---LDNNSKKRGKKKKDDK 216
            PGPQIDRI SAP GGLT+L    +     R  K K+++
Sbjct: 181 VPGPQIDRIYSAPIGGLTTLQAPAEEKKPARASKAKEEQ 219


>gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941]
 gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 237

 Score =  313 bits (801), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 172/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M]
 gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330]
 gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus
           2308]
 gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840]
 gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365]
 gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445]
 gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19]
 gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|254689062|ref|ZP_05152316.1| NADH dehydrogenase subunit E [Brucella abortus bv. 6 str. 870]
 gi|254693544|ref|ZP_05155372.1| NADH dehydrogenase subunit E [Brucella abortus bv. 3 str. Tulya]
 gi|254697196|ref|ZP_05159024.1| NADH dehydrogenase subunit E [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701574|ref|ZP_05163402.1| NADH dehydrogenase subunit E [Brucella suis bv. 5 str. 513]
 gi|254704121|ref|ZP_05165949.1| NADH dehydrogenase subunit E [Brucella suis bv. 3 str. 686]
 gi|254706979|ref|ZP_05168807.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M163/99/10]
 gi|254709914|ref|ZP_05171725.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94]
 gi|254713915|ref|ZP_05175726.1| NADH dehydrogenase subunit E [Brucella ceti M644/93/1]
 gi|254717027|ref|ZP_05178838.1| NADH dehydrogenase subunit E [Brucella ceti M13/05/1]
 gi|254718915|ref|ZP_05180726.1| NADH dehydrogenase subunit E [Brucella sp. 83/13]
 gi|254730092|ref|ZP_05188670.1| NADH dehydrogenase subunit E [Brucella abortus bv. 4 str. 292]
 gi|256031407|ref|ZP_05445021.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M292/94/1]
 gi|256044485|ref|ZP_05447389.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060918|ref|ZP_05451076.1| NADH dehydrogenase subunit E [Brucella neotomae 5K33]
 gi|256159528|ref|ZP_05457296.1| NADH dehydrogenase subunit E [Brucella ceti M490/95/1]
 gi|256254815|ref|ZP_05460351.1| NADH dehydrogenase subunit E [Brucella ceti B1/94]
 gi|256257311|ref|ZP_05462847.1| NADH dehydrogenase subunit E [Brucella abortus bv. 9 str. C68]
 gi|256369238|ref|YP_003106746.1| ATP synthase subunit E [Brucella microti CCM 4915]
 gi|260168541|ref|ZP_05755352.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
 gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
 gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str.
           16M]
 gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330]
 gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840]
 gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365]
 gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445]
 gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus
           S19]
 gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915]
 gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
 gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
          Length = 237

 Score =  313 bits (801), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 172/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457]
 gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC
           23457]
 gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28]
 gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90]
          Length = 237

 Score =  312 bits (800), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 173/210 (82%), Gaps = 1/210 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLL-DNNSKKRG 209
           +PGPQ  R++S PA GLT+L  D + KK G
Sbjct: 181 KPGPQDGRVTSEPASGLTALTKDLDYKKIG 210


>gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
 gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
          Length = 217

 Score =  312 bits (799), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/208 (70%), Positives = 169/208 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             GPQ  R SS P  GLTSL+D+  +K+
Sbjct: 181 AVGPQSSRKSSEPISGLTSLIDDEKEKK 208


>gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3]
          Length = 225

 Score =  310 bits (794), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 166/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGRGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204


>gi|256113341|ref|ZP_05454199.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 3 str. Ether]
 gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
          Length = 237

 Score =  310 bits (794), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 171/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           + GPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KSGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1]
 gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  310 bits (793), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 167/206 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEIATFYTQFQLQPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N DG+LSWEEVEC GACVNAPMVMI KDTYEDLT +RLEEIIDAF  G+G  I
Sbjct: 121 HHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFEAGKGAEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
             GPQ  R SS P  GLTSL+D   +
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDEKEQ 206


>gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
 gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
          Length = 225

 Score =  309 bits (792), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 166/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAELLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204


>gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 377

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 170/208 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W  + I+++P  R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEHVAAMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQIDR +S P  GLTSL +    K+
Sbjct: 181 KPGPQIDRETSNPLNGLTSLTEELDYKK 208


>gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476]
 gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476]
          Length = 223

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 167/203 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG ++LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSDELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFGAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
             GPQ  R SS P  GLTSLL++
Sbjct: 181 AVGPQNSRQSSEPISGLTSLLED 203


>gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188]
 gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 385

 Score =  308 bits (789), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 171/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I+++P  R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEHVAGMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S P  GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPINGLTALTEDLDYKK 208


>gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C]
          Length = 223

 Score =  307 bits (787), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 164/204 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+   QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N  GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204


>gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 225

 Score =  307 bits (786), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 146/204 (71%), Positives = 164/204 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+   QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N  GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204


>gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
 gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
          Length = 422

 Score =  307 bits (786), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 171/220 (77%), Gaps = 4/220 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP +F FS+ +  W  + I  YP  R  SAVIPLLMRAQEQEGWV++AA
Sbjct: 1   MSVRRLADETVQPDAFKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L M  IRVLE+ATFYTQFQL+PVG RAHVQVCGTTPCMLRG  ++++VC+ +I
Sbjct: 61  IEHIAEMLGMPLIRVLEVATFYTQFQLAPVGKRAHVQVCGTTPCMLRGAGEIMDVCKKRI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP   + DG LSWEEVECQGACVNAPMVM+ KD+YEDLT ER+EEIIDAF  G GD+I
Sbjct: 121 APKPFELSEDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN----NSKKRGKKKKDDK 216
            PGPQIDRI SAP GGLTSL ++     ++K GK KK +K
Sbjct: 181 PPGPQIDRIYSAPIGGLTSLTEDPTLKGARKTGKGKKAEK 220


>gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse]
 gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse]
          Length = 216

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/203 (70%), Positives = 166/203 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+Q+CGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLQPVGTKAHIQICGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
             GPQ  R SS P  GLTSL+D+
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDD 203


>gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1]
          Length = 217

 Score =  304 bits (779), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 163/204 (79%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +W    I++YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEYVAQMLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+   I
Sbjct: 121 HSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKNSDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ  R SS P  GLTSL+D N
Sbjct: 181 AVGPQNGRKSSEPINGLTSLIDEN 204


>gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 488

 Score =  303 bits (776), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 160/200 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ FQP  F+F++E+A W    I +YP  R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1   MSVRRLADDAFQPHGFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQDQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L  VCR+KI
Sbjct: 61  IEHVADMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGAEDLKAVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P HRN  GTLSWEEVEC GACVNAPMVMI  D YEDLTPERLEEIID F  G+G  +
Sbjct: 121 HAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPERLEEIIDEFEAGRGGDV 180

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           + GPQ  R  S P GGLT+L
Sbjct: 181 KTGPQNGRHESVPIGGLTTL 200


>gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
 gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
          Length = 500

 Score =  303 bits (775), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 164/214 (76%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP SF+F++E+A W +  + +YP  R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1   MSVRRLADDSIQPQSFAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +E VA+ L M  IRVLE+ATFYTQF L P+GTRAHVQVCGTTPCMLRG E L  VC+ KI
Sbjct: 61  VEHVADRLKMPLIRVLEVATFYTQFMLQPIGTRAHVQVCGTTPCMLRGAEDLKAVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P HRNS GTLSWEEVECQGACVNAPMVMI KD YEDLTPERLEEIID F  G G  +
Sbjct: 121 HPVPFHRNSSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAGNGANV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
             GPQ  R  S P GGLTSL ++      K+K++
Sbjct: 181 TTGPQNGRHQSVPIGGLTSLTEDYGDLIAKQKRE 214


>gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
 gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
          Length = 395

 Score =  298 bits (764), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 163/220 (74%), Gaps = 2/220 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAEE  QP+ F+F+ E A      I +YP  R QSAVIPLLM AQEQ+GWV++ A
Sbjct: 1   MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L M YIR LE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E+L+EVCR+KI
Sbjct: 61  IETIADMLGMPYIRALEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEELMEVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P H N  GTLSWEEVECQGACVNAPMVMI KD YEDLTPERL  IID F  G+ + I
Sbjct: 121 HPEPFHLNESGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLAYIIDRFDAGRPEDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLD--NNSKKRGKKKKDDKIS 218
             GPQI R  SAPA GLTSL +      KR  K    K S
Sbjct: 181 NTGPQIKRTFSAPASGLTSLTEEIKPGSKRAAKSTKAKAS 220


>gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583]
 gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis
           KC583]
          Length = 225

 Score =  295 bits (755), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 163/204 (79%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +W    I++YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L MAYIRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG  +LI++C+ KI
Sbjct: 61  IEHIAQMLSMAYIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSTELIKICQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF   +G  +
Sbjct: 121 HPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEANKGFEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ  R SS P  GLTSL++ +
Sbjct: 181 AVGPQNSRKSSEPINGLTSLINED 204


>gi|260462234|ref|ZP_05810478.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032094|gb|EEW33361.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 426

 Score =  285 bits (728), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 159/205 (77%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP+SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPASFAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVM+ KDT+EDLTPERL EIID +  G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205
            PGPQ  R  S PA GLT+L +  +
Sbjct: 181 APGPQNGRTGSEPATGLTTLKNEKA 205


>gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
 gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
          Length = 212

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/214 (62%), Positives = 167/214 (78%), Gaps = 5/214 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP+SF F++E+  W  + I++YP  R QSAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKELQPASFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L MA+IRV+EIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61  AIRAVADLLGMAHIRVMEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G  + 
Sbjct: 121 IHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSL--LDNNSKKRGKK 211
            +PGPQIDR  +AP GG   L  + +++ K+GKK
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLQEVGDDATKKGKK 212


>gi|209885056|ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
           carboxidovorans OM5]
 gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
           carboxidovorans OM5]
          Length = 250

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 160/211 (75%), Gaps = 3/211 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA +E QP SF F++E+  W  + I ++PP R QSAVIP+L R QEQ EGWVS A
Sbjct: 1   MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L MA+IRVLEIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61  AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++  G+ 
Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFAS--GNP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
            +PGPQIDR  +AP GG   L D  +   G+
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLKDITASGDGR 209


>gi|190891290|ref|YP_001977832.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
 gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           CIAT 652]
          Length = 339

 Score =  274 bits (701), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 142/169 (84%)

Query: 47  MRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML 106
           MRAQEQ+GWV+RAAIE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCML
Sbjct: 1   MRAQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCML 60

Query: 107 RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLE 166
           RG E L+ VC++KIH  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLE
Sbjct: 61  RGSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLE 120

Query: 167 EIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           EIID F+ G G +I+PG QIDRI SAP GG TSL  +  K R + KK D
Sbjct: 121 EIIDTFAAGNGASIKPGTQIDRIFSAPEGGPTSLTTDEPKARTRAKKAD 169


>gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099]
 gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti
           MAFF303099]
          Length = 424

 Score =  274 bits (700), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 156/200 (78%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPVSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID +  G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASV 180

Query: 181 RPGPQIDRISSAPAGGLTSL 200
            PGPQ  R  S PA GLT+L
Sbjct: 181 APGPQNGRTGSEPASGLTTL 200


>gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 426

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/200 (65%), Positives = 156/200 (78%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP+SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPASFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+K+
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKV 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID +  G+G  +
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAV 180

Query: 181 RPGPQIDRISSAPAGGLTSL 200
            PGPQ  R  S PA GLT+L
Sbjct: 181 EPGPQNGRTGSEPASGLTTL 200


>gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
 gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
          Length = 228

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 157/213 (73%), Gaps = 3/213 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I +YP  R  SA I +L RAQEQ +GWVS A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+N+
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++GQ   
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +PGPQIDR  SAP GG T+L    +K  G ++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGQR 211


>gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
 gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
          Length = 203

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 153/201 (76%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA ++ QP+SF+F+EE+  +    I++YP  R  SAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA++L M YIRVLE+ATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61  AIRVVADMLGMPYIRVLEVATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMV + KDTYEDLTPE   +++D F+TG   T
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGNLPT 180

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
             PGPQ  R  SAPAGG T+L
Sbjct: 181 --PGPQNGRQFSAPAGGPTTL 199


>gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
 gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
          Length = 251

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 157/213 (73%), Gaps = 3/213 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I++YP  R  SA I +L RAQEQ G W+S A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61  AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++  G+ 
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFAS--GNP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +PGPQIDR  SAP GG T+L    +K  G ++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGRR 211


>gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS278]
 gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS278]
          Length = 203

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 153/201 (76%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP+SF+F++++  +    I++YP  R  SAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA++L M YIRVLEIATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61  AIRVVADMLGMPYIRVLEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMV + KDTYEDLTPE   +++D F+TG   T
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATGNLPT 180

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
             PGPQ  R  SAPAGG T+L
Sbjct: 181 --PGPQNGRQFSAPAGGPTTL 199


>gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
 gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
          Length = 250

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 156/210 (74%), Gaps = 6/210 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I++YP  R  SA I +L RAQEQ G W+S A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++GQ   
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
            +PGPQIDR  SAP GG T+L   N+  +G
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTL---NTAAKG 205


>gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
 gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 249

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 154/213 (72%), Gaps = 5/213 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA +E QP SF+F++E+  W ++ +++YPP R  SAVI ++ RAQEQ  GW+S A
Sbjct: 1   MAVRRLAPKELQPESFAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 61  AIRAVADLLDMPHIRALEIATFYTMFQLHPVGRKAHVQVCGTTPCRLRGAEDIIKVCQNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMVMIGKDTYEDLTPE   +++D    G G  
Sbjct: 121 IHHDPSHLSADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGI--GSGHP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNN--SKKRGK 210
            +PGPQ  R  +AP GG   L D    S   GK
Sbjct: 179 PKPGPQGGRQFAAPEGGPRVLKDGGGPSASHGK 211


>gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110]
 gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum
           USDA 110]
          Length = 203

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 154/201 (76%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP+SF+F+EE+  +  + I++YP  R  SAVI +L RAQEQ +GWVS A
Sbjct: 1   MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V+A++LDM YIRVLE+ATFYT FQL+PVG +AHVQVCGTTPC LRG E LI VC ++
Sbjct: 61  AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC GACVNAPMV+IGKDTYEDLT E   +++D F++  G+ 
Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFAS--GNP 178

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
            +PGPQ  R  SAP  G T+L
Sbjct: 179 PKPGPQNGRQFSAPITGPTTL 199


>gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
 gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
 gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
           CGA009]
 gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 249

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 149/201 (74%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP SF+F+ E+  W  + I++YPP R  SAVI ++ RAQEQ  GW+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+N+
Sbjct: 61  AIRTVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F++G   T
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASGNPPT 180

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
             PGPQ  R  +AP  G T+L
Sbjct: 181 --PGPQNGRQHAAPMTGPTTL 199


>gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
 gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 265

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 147/197 (74%), Gaps = 3/197 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA +E QP SF+F+EE+  W    I++YPP R  SAVI ++ RA EQ  GW++ A
Sbjct: 15  MAVRRLAPKELQPESFAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEA 74

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 75  AIRAVADLLQMPHIRALEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEDIIKVCKNR 134

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H ++DG  SWEEVEC G+CVNAPMVMI KDTYEDLTPE   +++D F++G   T
Sbjct: 135 IHHEPFHLSADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASGNFPT 194

Query: 180 IRPGPQIDRISSAPAGG 196
             PGPQ  R  +AP GG
Sbjct: 195 --PGPQNGRQFAAPEGG 209


>gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
 gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 249

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 152/201 (75%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP SF+F+EE+  W    I++YPP+R  SAVI ++ RAQEQ  GW+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V++++L+M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+++
Sbjct: 61  AIRVISDMLEMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F+   G+ 
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAA--GNP 178

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
            +PGPQ  R  +AP  G T+L
Sbjct: 179 PKPGPQNGRQYAAPITGPTTL 199


>gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
 gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 249

 Score =  254 bits (648), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 150/201 (74%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP SF+F+EE+  W    I++YPP R  SAVI ++ RAQEQ  GW+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V+ ++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+++
Sbjct: 61  AIRVIGDMLGMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  PLH ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F +  G+ 
Sbjct: 121 IHHDPLHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVS--GNK 178

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
            +PGPQ  R  +AP  G T+L
Sbjct: 179 PKPGPQNGRQYAAPISGPTTL 199


>gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris
           DX-1]
 gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 148/201 (73%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP SF+F+ E+  W  + I++YPP R  SAVI ++ RAQEQ  GW+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+N+
Sbjct: 61  AIRAVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KD YEDLTPE L +++D F++G    
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGH--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
            +PGPQ  R  +AP  G T+L
Sbjct: 179 PQPGPQNGRQHAAPITGPTTL 199


>gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 388

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 150/205 (73%), Gaps = 5/205 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRR+  +  QP+ F+FS E+  W  E I++YP  +  SA+IPLL RAQEQ G W+   
Sbjct: 1   MAVRRVNPD--QPAEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  V ++L MA+IR +E+ATFYT FQLSPVGT+AHVQVCGTTPCMLRG   LI VC+++
Sbjct: 59  AIRAVCDLLGMAHIRGMEVATFYTMFQLSPVGTKAHVQVCGTTPCMLRGSRDLISVCQHR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH+ P   NSDGTLSWEEVEC G C NAP+V IGKDTYEDLT E+ E+++D F  G+   
Sbjct: 119 IHEHPHTPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGK--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNN 204
           ++PG Q  R +S PAGG TSL D +
Sbjct: 177 LKPGSQTGRTASCPAGGPTSLTDQS 201


>gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
 gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
          Length = 290

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 147/201 (73%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA  E QP +F+F++E+  W  + I++YP  R  SAVIPLLMRAQEQ G WVS  
Sbjct: 1   MSVRRLAPREVQPENFAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEP 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  V ++L MA IRV EIATFYTQFQL+PVG +AH+QVCGTTPCMLRG  +L++VC+++
Sbjct: 61  AMRYVGDMLGMAPIRVYEIATFYTQFQLNPVGKKAHIQVCGTTPCMLRGAGELMDVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH++  H + +G  SWEEVEC G CVNAPM+ + KD YEDLTP  LE I+DAF   +G+ 
Sbjct: 121 IHEEQFHLSENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFE--RGEK 178

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
              GPQI R SS P  GL  L
Sbjct: 179 PDAGPQIARHSSEPVTGLRVL 199


>gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
 gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
          Length = 266

 Score =  244 bits (623), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 150/210 (71%), Gaps = 5/210 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRL  E  QP SF FS E+  W  +VI RYP  R  SAV+P+L RAQEQ GWV+  A
Sbjct: 1   MSVRRLHHE--QPESFEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I V++ +LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E+LI+VC++KI
Sbjct: 59  IRVISEMLDMPRIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEELIKVCKSKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            + P   + DG  SWEEVEC GACVNAPMV I KD YEDL  E+ E+++D  + G+   +
Sbjct: 119 SETPHTLSEDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGK--PV 176

Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRG 209
            PGPQ +DRI +AP GG T+LL+     +G
Sbjct: 177 LPGPQGVDRIFAAPEGGPTTLLNIEDTTKG 206


>gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
 gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
          Length = 425

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 142/198 (71%), Gaps = 4/198 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHHE--QPESFAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L MAYIR LE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E+L+E+C+ KI  
Sbjct: 60  AVAEMLGMAYIRALEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEELMELCKTKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLTP +LE ++D  + G+  T  P
Sbjct: 120 RPHELSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGRVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSL 200
           GPQ  R +S PA GLTSL
Sbjct: 178 GPQNGRYASEPASGLTSL 195


>gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
 gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
          Length = 437

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 149/209 (71%), Gaps = 7/209 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA E  QP SF+F+E++  W  ++I RYP  R  SAVIPLL RAQEQ EGWVS  
Sbjct: 1   MAVRRLAAE--QPESFAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIAELLDMPKIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLTP+   ++ID  + G+   
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGK--E 176

Query: 180 IRPGPQIDRISSAPAGGLTSL--LDNNSK 206
           + PGPQ  R  +   GG TSL  LD+++K
Sbjct: 177 VTPGPQNGRRFAMAEGGQTSLTELDDDTK 205


>gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
 gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
          Length = 468

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 148/211 (70%), Gaps = 5/211 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA E  QP  F F+ ++  W  ++I RYP  R  SAVIPLL RAQEQ +GWV   
Sbjct: 1   MAVRRLAAE--QPECFEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++LD+ +IRVLE+ATFYT FQL PVG++AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIADMLDIPHIRVLEVATFYTMFQLQPVGSKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLTP+   ++ID  +  +G  
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIA--EGKE 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
           + PGPQ  R  S P GG TSL + N   +G+
Sbjct: 177 VMPGPQNGRRFSMPEGGQTSLTEVNDNSKGE 207


>gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase, E subunit subfamily [polymorphum
           gilvum SL003B-26A1]
 gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Polymorphum gilvum SL003B-26A1]
          Length = 378

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 144/203 (70%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA E  QP  F+F+ ++  W  +VI RYP  R  SAVIPLL RAQEQ +GWV   
Sbjct: 1   MAVRRLAAE--QPDHFAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L M +IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI VC++K
Sbjct: 59  AIRYIADMLGMPHIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGAEDLIRVCKSK 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I       ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE LE++I+  + G+   
Sbjct: 119 IAAHAHDLSADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGR--E 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           + PGPQ  R  S P GG TSL +
Sbjct: 177 VTPGPQNGRRFSMPEGGATSLTE 199


>gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Rhodobacterales bacterium HTCC2654]
          Length = 423

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP+SF+F+ ++  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHHE--QPASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  GVADMLGMEYIRALEVATFYFMFQLQPVGSVAHFQICGTTSCMIMGAEDLIAVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT E   ++ID    G G+   P
Sbjct: 120 NPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLIDRM--GAGEVPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S PAGGLTSL D+ + K
Sbjct: 178 GPQNGRYASEPAGGLTSLKDHEANK 202


>gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
 gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
          Length = 418

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 144/210 (68%), Gaps = 5/210 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA E  QP SF F+EE+  W  ++I RYP  R  SAVIPLL RAQEQ +GWVS  
Sbjct: 1   MAVRRLAAE--QPDSFEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIADLLDMPNIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLT E   +++D      G+ 
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDA--GND 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           + PGPQ  R  S   GG TSL +     +G
Sbjct: 177 VTPGPQNGRRFSMAEGGQTSLTEIEDDTKG 206


>gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
 gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
          Length = 389

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGWV++ AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A++L MAYIRVLE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VCR KI  
Sbjct: 60  AIADMLGMAYIRVLEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ   + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--LVAP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGK 202


>gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
 gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
          Length = 379

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 147/206 (71%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL +E  QP+SF+F+  +  W    ++++P  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKE--QPASFAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A +LDMAYIR LE+ATFY  FQL+PVG+ AHVQ+CGTT CM+ G E LIEVC+ +I  
Sbjct: 60  HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEALIEVCQQEIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K  + + DG  SWEEVEC GAC NAPMV IGKD YEDLTPE+L EI+   + G+  T  P
Sbjct: 120 KAHNLSDDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGRVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P  GLTSL +  S K+
Sbjct: 178 GPQNGRYAAEPLSGLTSLKEFESGKK 203


>gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2]
 gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2]
          Length = 366

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 145/205 (70%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP +F+F+ ++  W    + ++P  R  SA+IP+L RAQEQEGW+SRAAIE
Sbjct: 2   LRRLYHD--QPETFAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LD+AYIR LE+A+FY  FQL PVG+ AH+QVCGT  CM+ G E LI VC++KI  
Sbjct: 60  HVAAMLDLAYIRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKITD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EIID  + G+  T  P
Sbjct: 120 KPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGRVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL D++S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLKDHDSGK 202


>gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
 gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
          Length = 396

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL +E  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHKE--QPESFAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDM +IR LE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E LI VCR KI  
Sbjct: 60  HVAQMLDMDFIRGLEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEDLIGVCREKISP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG LSWEEVEC GAC NAPM  IGKD YEDLT ER  +++D    G+     P
Sbjct: 120 NPHELSADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGK--VPAP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSLL ++  +
Sbjct: 178 GPQNGRYASEPVSGLTSLLAHDKGR 202


>gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 382

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPE--QPESFAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E LI VCR KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG LSWEEVEC G+C NAPM  IGKD YEDLT E    IID  ++G+     P
Sbjct: 120 KPHQLSADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P GGLTSL +    K
Sbjct: 178 GPQNGRYAAEPKGGLTSLKEYEPGK 202


>gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
 gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
          Length = 303

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/200 (56%), Positives = 140/200 (70%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E L  +ID FS   G+  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSA--GEVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
 gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           KD131]
          Length = 303

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 141/204 (69%), Gaps = 4/204 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS   G+  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206
           GPQ  R SS PAGG TSL +  S+
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGSQ 201


>gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
 gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
          Length = 382

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 140/201 (69%), Gaps = 4/201 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F++ +  W    IS+YP  R  SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPESFAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDMAYIRVLE+ATFY  FQL PVG+ AHVQ+CGTT CM+ G E L+ VC++KI  
Sbjct: 60  AVAEMLDMAYIRVLEVATFYFMFQLQPVGSVAHVQICGTTTCMICGAEDLMAVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EI+D  + G+     P
Sbjct: 120 KAHEVSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDN 203
           GPQ  R SS P GG   L ++
Sbjct: 178 GPQNGRYSSEPKGGPVVLTEH 198


>gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3]
 gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 414

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    ++++P  R  SAVIPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVGT AH+Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  AVADMLGMAYIRVLEVASFYFMFQLQPVGTVAHIQICGTTSCMICGAEDLIAVCKEKIAD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT +R  E++D  + G+     P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL + +S K
Sbjct: 178 GPQNGRYASEPLKGLTSLTEYDSGK 202


>gi|163741488|ref|ZP_02148879.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
 gi|161385222|gb|EDQ09600.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
          Length = 397

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37]
 gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37]
          Length = 242

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF F+E +  W  E I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL P G+ AH+Q+CGTT CM+ G E L+ VCR+KI  
Sbjct: 60  YVSEMLGMAYIRGLEVATFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLMAVCRDKISA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   + DG  SWEEVEC GAC NAPM  IGKD YEDLT E+L  ++DA    +G+  +P
Sbjct: 120 KPHTLSEDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDALD--KGEVPQP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R +S P GG T+L +
Sbjct: 178 GPQNGRFASEPLGGATTLTE 197


>gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
 gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
          Length = 437

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/203 (55%), Positives = 139/203 (68%), Gaps = 4/203 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+FS  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLYKD--QPESFAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQ+ PVG+ AH Q+CGTT CM+ G E L+ VCR K+  
Sbjct: 60  HVADMLGMAYIRALEVASFYFMFQMQPVGSVAHFQICGTTSCMICGAEDLVAVCREKVAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   + DG  SWEEVEC GAC NAPM  IGKD YEDLT ER  EIID  + G+  T  P
Sbjct: 120 NPHELSPDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGK--TPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
           GPQ  R ++ P  GLTSL + +S
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDS 200


>gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
 gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter
           sphaeroides 2.4.1]
          Length = 303

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS   G+  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
 gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 303

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HHAQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS   G+  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GEVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
 gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
          Length = 384

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    +++YP  R  SAVIPLL RAQEQEGWVS+ A+E
Sbjct: 2   LRRLHSE--QPESFAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQ+ P G+ AHVQ+CGTT CM+ G E L+ +C+ KI +
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLVAICKEKIAE 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E    ++D  + G+   + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGK--KVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202


>gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
 gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
          Length = 396

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 138/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+FS  +  W    IS+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLYHQ--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC++KI  
Sbjct: 60  HVADMLAMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  R  EIID  + G+     P
Sbjct: 120 KAFDLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL D +S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDFDSGR 202


>gi|163738801|ref|ZP_02146215.1| ATP synthase subunit E [Phaeobacter gallaeciensis BS107]
 gi|161388129|gb|EDQ12484.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis
           BS107]
          Length = 397

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSIAHVQICGTTSCMICGAEDLIAVCQDKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 QPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
 gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
          Length = 391

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHSE--QPESFAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCKEKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
 gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
          Length = 395

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A+IR LE+ATFY  FQL PVG  AH+Q+CGT  CM+ G E L+ V R KI  
Sbjct: 60  GVADMLGLAHIRALEVATFYFMFQLQPVGAVAHIQICGTLSCMICGAEDLVAVAREKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E    IIDA + G+  T  P
Sbjct: 120 NPHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMARGEVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ +R +S PAGGLTSL ++ + +
Sbjct: 178 GPQTERYASEPAGGLTSLTEHAAGR 202


>gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
 gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
          Length = 389

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F+  +  W    I+++P  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPD--QPDSFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC+ +I  
Sbjct: 60  HVSEMLGMAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCKERIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  RL EI+D  S G+     P
Sbjct: 120 KPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDGR--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P GGLTSL D+ S +
Sbjct: 178 GPQNGRYASEPLGGLTSLTDHESGR 202


>gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
 gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
          Length = 410

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    +++YP  R  SAVIP+L RAQEQEGWV++ A+E
Sbjct: 2   LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL P G+ AH+QVCGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMICGAEDLIAVCKDKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT     ++ID  + G+   + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGK--AVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL D  + K
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDYEADK 202


>gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193]
 gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193]
          Length = 383

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    ++++P  R  SAVIPLL RAQEQEGWVS+ AIE
Sbjct: 2   LRRLHSE--QPESFAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A++L MAYIRVLE+ +FY  FQ+ P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YIADMLGMAYIRVLEVCSFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + G+   + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGK--KVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202


>gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
 gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
          Length = 309

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP++F+F++ +  W    + ++P  R  SA+IP+L RAQEQEGW++R AIE
Sbjct: 2   LRRLYHD--QPATFAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDMAY+R LE+A+FY  FQL PVG+ AH+QVCGT  CM+ G E LI VC++KI  
Sbjct: 60  YVAKMLDMAYMRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  RL EIID  + G+  T  P
Sbjct: 120 KAHSLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGRVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P GGLT+L D  S K
Sbjct: 178 GPQNGRFAAEPKGGLTTLKDFTSGK 202


>gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
 gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
          Length = 366

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +LD+A+IR LE+A+FY  FQL PVG+ AH+Q+CGT  CM+ G E LI VC++KI  
Sbjct: 60  HVSTMLDLAFIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLIGVCQDKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP H ++DG  SWEEVEC GAC NAPM  IGKD YEDL  ERL EII+    G+  T  P
Sbjct: 120 KPHHLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGKVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRFAAEPLSGLTSLTEYDSGR 202


>gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
 gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 303

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/200 (57%), Positives = 137/200 (68%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    IS+YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HHAQPDSFAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MA IR LE+ATFY  FQL PVG  AH+Q+CGTT C++ G E+LI VCR KI  
Sbjct: 60  HVADMLGMARIRALEVATFYFMFQLQPVGRVAHIQICGTTSCLICGAEELIRVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS   GD  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSA--GDVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           G QI R SS PAGG TSL +
Sbjct: 178 GSQIGRFSSEPAGGATSLTE 197


>gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
 gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 146/205 (71%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+ ++  W N  I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A++R LE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60  GVADMLGLAFMRALEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ E+IDA +  +G+   P
Sbjct: 120 NPHEVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALA--RGEVPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLT+L D  + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYEAGK 202


>gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
 gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
          Length = 460

 Score =  227 bits (578), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+F+ E+  W    +++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKD--QPESFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A +LDMAYIR LE+ATFY  FQL+PVG+ AHVQ+CGTT CM+ G E LI VC+  I  
Sbjct: 60  HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEDLIAVCQEMIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT ERL EI+   +  +G    P
Sbjct: 120 KAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELA--EGKVPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202


>gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
 gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
          Length = 365

 Score =  227 bits (578), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  SVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG LSWEEVEC G+C NAPM  IGKD YEDLT E   +++D    G+     P
Sbjct: 120 KPHVLSADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGR--VPIP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL  ++S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTAHDSGR 202


>gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
 gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
          Length = 398

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 136/205 (66%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+FS  +  W    IS+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLYHK--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  HVADLLRMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCQEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  R  EIID  + G+     P
Sbjct: 120 KAFELSTDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLKEFESGR 202


>gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
 gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
          Length = 254

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 139/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP+SF+F+  +  W    +S+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRL--HHTQPASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ A++Q+CGTT C++ G E LI VCR  I  
Sbjct: 60  HVADMLGMAYIRALEVATFYFMFQLQPVGSVANIQICGTTSCLICGAEDLIAVCRELIAD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  ERL  +I  FS G+     P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGEVPV--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL D+ + +
Sbjct: 178 GPQNGRYASEPLAGLTSLKDHAAGR 202


>gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 222

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 148/202 (73%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP+SF+FS+E+   V+  I++YP  R +SAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAKD--QPASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A+ LDMAYIRVLE+ATFYT F L PVG+ A +QVCGTTPCMLRG  +L++VC+++I
Sbjct: 59  IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSGELMKVCKSRI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +K    ++DG   WEEVEC GACVNAPM MI    +EDLT   L +IID F+ G+    
Sbjct: 119 GEK-QTLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDDFAAGKAP-- 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PG +IDR++SAP GG  +L D
Sbjct: 176 KPGTRIDRVNSAPEGGPLTLTD 197


>gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
 gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
          Length = 245

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS+RRL     QP SF+FS+E+  W    + +YP  R  SAVIP+L RAQEQEGW+S+ A
Sbjct: 1   MSIRRL--HTTQPDSFTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE V  +L+M +IRVLE+A+FY  FQL+PVG+ AH+QVCGT  CM+ G E LI +C+  I
Sbjct: 59  IEAVGELLEMPFIRVLEVASFYFMFQLAPVGSVAHIQVCGTLSCMICGAEDLIGICKEII 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +KP   + DG LSWEEVEC GAC NAPM  IGKD YEDLT      I++    G+  T 
Sbjct: 119 SEKPHELSEDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQLLKGEVPT- 177

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKK 207
            PGPQ  R +S P  GLT+L D NS K
Sbjct: 178 -PGPQNGRYASEPLSGLTTLSDFNSGK 203


>gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
 gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
          Length = 436

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 138/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL PVG  AH Q+CGTT CM+ G E LIEVC+ +I  
Sbjct: 60  HVSEMLGMAYIRGLEVATFYFMFQLQPVGEVAHFQICGTTSCMICGAEDLIEVCKERIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT +    +ID  + GQ     P
Sbjct: 120 KAHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQ--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL D++S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDHDSGK 202


>gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
           238]
 gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
           238]
          Length = 354

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 146/205 (71%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+ ++  W N  I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A++R LE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60  SVADMLGLAFMRALEVASFYFMFQLKPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  ++ ++IDA +  +G+   P
Sbjct: 120 NPHDVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALA--RGEVPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLT+L D  + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYAADK 202


>gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB
           1003]
 gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus]
 gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter
           capsulatus]
 gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus]
 gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB
           1003]
          Length = 389

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/197 (55%), Positives = 134/197 (68%), Gaps = 4/197 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRL--HATQPDSFAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++LDM YIRVLE+A+FY  FQL P G+ AH+QVCGTT CM+ G E LIEVC+ KI  
Sbjct: 60  YVADLLDMPYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMIMGSENLIEVCKRKISH 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC GAC NAPM  IGKD +EDLT   LE +ID  + G+     P
Sbjct: 120 HPHALSADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGKAPV--P 177

Query: 183 GPQIDRISSAPAGGLTS 199
           G +I R  + PA GLTS
Sbjct: 178 GSEIGRFGAEPATGLTS 194


>gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040]
 gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040]
          Length = 398

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 139/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    +++YP  R  SAVIP+L RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL P G+ AH+Q+CGTT CM+ G E L+ +C++KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   + DG  SWEEVEC G+C NAPM  IGKD YEDLT     +++D  + G+   + P
Sbjct: 120 KPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGK--PVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  + K
Sbjct: 178 GPQNGRYAAEPKAGLTSLTEYEAGK 202


>gi|163732061|ref|ZP_02139507.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
 gi|161394359|gb|EDQ18682.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
          Length = 359

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP +F+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHPD--QPETFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L ++YIR LE+ATFY  FQL PVG  AH+QVCGTT CM+ G E LI VC+ KI +
Sbjct: 60  HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLISVCQEKIAR 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   + DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ EIID  + G+     P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL++ +S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLIEYDSGK 202


>gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12]
 gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL
           12]
          Length = 402

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP+ F+F+ E+  W    ++++P  R  SA+IP+L RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHAE--QPADFAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++LDM YIR LE+ATFY  FQL PVG+ AH+Q+CGTT CM+ G E L+ VC+ KI  
Sbjct: 60  YVADMLDMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCMICGAEDLVAVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT E    ++D  + G+     P
Sbjct: 120 RAHQLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGE--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S PAGGLTSL +  + K
Sbjct: 178 GPQNGRYTSEPAGGLTSLTEYEAGK 202


>gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
 gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
          Length = 421

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L +AYIR LE+ATFY  FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  HVSEMLGLAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    + DG  SWEEVEC GAC NAPM  IGKD YEDLT E    +ID  + G+     P
Sbjct: 120 KAHQISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL D +S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDYDSGK 202


>gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
 gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
          Length = 388

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 139/204 (68%), Gaps = 7/204 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    I++YP  R  SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHPE--QPESFAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  TVADMLGMAYIRVLEVATFYFMFQLQPVGSVAHVQVCGTTTCMICGAEDLIGVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    + DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EI+D  + G+     P
Sbjct: 120 KAHVVSPDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGG---LTSLLDN 203
           GPQ  R  S P GG   LT+ +D 
Sbjct: 178 GPQNGRYGSEPLGGPVVLTAHVDG 201


>gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114]
 gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh
           114]
          Length = 359

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHPD--QPDSFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L ++YIR LE+ATFY  FQL PVG  AH+QVCGTT CM+ G E L+ VC+ KI +
Sbjct: 60  HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLVAVCQEKIAR 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   + DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ EIID  + G+     P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202


>gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium HTCC2083]
 gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 384

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKD--QPDSFAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L +AYIR LE+A+FY  FQL PVG+ AH+Q+CGT  CM+ G E L+ VCR KI  
Sbjct: 60  HVSDMLGLAYIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCREKISN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E L +++D  + G   T  P
Sbjct: 120 KPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAGSVPT--P 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R S  P  GL+SL D +S K
Sbjct: 178 GPQNGRYSCEPLSGLSSLKDYDSGK 202


>gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
 gi|266652|sp|P29914|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName:
           Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1,
           chain 2
 gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans]
 gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
          Length = 239

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 136/200 (68%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL+    QP SF F+  +  W    +++YP  R QSA+IP+L RAQEQEGW+SR AIE
Sbjct: 2   LRRLSP--IQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A++L M YIR LE+ATFY  FQL PVG+ AH+Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  YCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E+L  +ID F+ G+     P
Sbjct: 120 EPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPV--P 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R S+   GG T+L D
Sbjct: 178 GPQNGRFSAEALGGPTALAD 197


>gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 224

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 7/209 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA E  QP+SF+FS E+  W +  I++YP  R  SAVIPLL +AQEQ  GW+   
Sbjct: 1   MSVRRLAAE--QPASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA+ L MAYIRVLEIATFYT F L PVG R  VQ+CGTTPC LRG +KL EVC  K
Sbjct: 59  AIRVVADKLGMAYIRVLEIATFYTMFNLEPVG-RHFVQLCGTTPCALRGADKLKEVCHRK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +  H   DG LSW EVEC GAC NAPMV +  D +EDLTPE LE+++D    G+   
Sbjct: 118 IGPE-RHVTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           ++ G Q  R +SAP GG TSL D +   R
Sbjct: 175 VKTGSQTGRQASAPEGGRTSLTDPSLYNR 203


>gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
 gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
          Length = 225

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 139/202 (68%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS ++       I +YP SR QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPASFAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +  +L M +IRVLE+ATFYT F L PVG  A +QVCGTTPCMLRG  +L++VC+ KI
Sbjct: 59  IRAIGELLGMPFIRVLEVATFYTMFMLEPVGKTALIQVCGTTPCMLRGANELMKVCKEKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K  H ++DG  +W+EVEC GAC NAPM  I    +EDLTPE L +IID F+ G+  T 
Sbjct: 119 GPKD-HLSADGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PG    R +S PAGG  +LLD
Sbjct: 176 KPGSYQGRATSEPAGGAKTLLD 197


>gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
 gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
          Length = 238

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/180 (58%), Positives = 125/180 (69%), Gaps = 2/180 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I++YP  R  SA+IPLL RAQEQEGW++RAAIE VAN+L+M +IR LE+ATFY  FQL P
Sbjct: 27  IAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIEHVANMLEMPFIRALEVATFYFMFQLQP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG  AH+Q+CGT  CML G E L+ VCR KI  +P   + DG LSWEEVEC GAC NAPM
Sbjct: 87  VGAVAHLQICGTLSCMLCGAEDLVSVCRQKIAAQPHSLSDDGKLSWEEVECLGACTNAPM 146

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
             IGKD YEDLT E L ++IDA     GD  +PGPQ  R S+ P GG T L +    K+ 
Sbjct: 147 AQIGKDYYEDLTAEGLSDLIDALRA--GDVPQPGPQNGRFSAEPLGGATVLQNTPGDKQA 204


>gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus
           CB 48]
          Length = 221

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 136/202 (67%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA    QP SF+F  E+    N  I++YP +R QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAA--VQPDSFAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I VVA +L MA IRV E+ATFYT F L PVG+ A +QVCGTTPC LRG E L++VC++KI
Sbjct: 59  IAVVAEMLGMARIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCQLRGSEALMKVCKDKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K    ++DG   W+EVEC GAC NAPM  I    YEDLTP+ L +IID FS G+  T 
Sbjct: 119 GPKD-KLSADGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           + GP   R +S P GG T+L D
Sbjct: 176 KTGPYNGRFTSEPLGGATTLKD 197


>gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 341

 Score =  211 bits (536), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 137/209 (65%), Gaps = 7/209 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRL  +  QPS F F+ E+  W  E I +YP  R Q+AV+PLL RAQEQ + W+   
Sbjct: 1   MSVRRL--DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  V ++L M YIRV E+ATFY+ F LSPVG R HVQVCGTTPCMLRG E + +VC+ +
Sbjct: 59  AIRYVGDLLGMPYIRVYEVATFYSMFNLSPVG-RYHVQVCGTTPCMLRGAEDIKKVCKRE 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +      +G  SW EVEC GACVNAPMV I  D YEDLTPE  E ++     G+   
Sbjct: 118 IGDE-REVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGR--E 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           ++PG QI R  SAP GG T+LL  + +K+
Sbjct: 175 VKPGSQIGRQCSAPEGGPTTLLFEDEEKQ 203


>gi|197105263|ref|YP_002130640.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
 gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
          Length = 220

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 133/202 (65%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRL+    QP SF+FS E+       ++ +PP + QSAV+P+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLSP--VQPESFAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  VA +L M  IRVLE+ATFYT F L PVGT A VQVCGTTPC  RG E L+EVC+ +I
Sbjct: 59  IRAVAELLGMPVIRVLEVATFYTMFMLEPVGTHALVQVCGTTPCQSRGAEALMEVCKRRI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +  HR++DG   W+EVEC GAC NAPM  I    YEDLTPE  E+++D F+ G+  T 
Sbjct: 119 GPQ-SHRSADGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
            PG  I R  SAP GG  +L D
Sbjct: 176 PPGSAIGRQCSAPEGGPMTLTD 197


>gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC
           21756]
 gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC
           21756]
          Length = 229

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 138/202 (68%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS+ES    +   ++YP +R QSAVIP+L  AQ+QEGW+S  A
Sbjct: 1   MSVRRLAKE--QPASFTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L+M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L  V ++KI
Sbjct: 59  IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKDKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +   H ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+  + 
Sbjct: 119 GEAN-HVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PG    R++S P G + +L D
Sbjct: 176 KPGSYDGRVASEPKGKIQTLTD 197


>gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
 gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
          Length = 218

 Score =  207 bits (528), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 136/203 (66%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA    QP+SF+FS E+    N  I++YP +R QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAA--VQPASFAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A +L M  IRV E+ATFYT F L PVG+ A +QVCGTTPCMLRG + L+ VC+ KI
Sbjct: 59  ISAIARLLGMPQIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSDALMAVCKAKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K    ++DG  +W+EVEC GAC NAPM  I    YEDLT E + +IID F+ G+  T 
Sbjct: 119 GPKD-KLSADGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
            PGP   R +S P GG T+L D+
Sbjct: 176 APGPYNGRKTSEPLGGATTLSDS 198


>gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
           BL2]
 gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
           BL2]
          Length = 264

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 137/202 (67%), Gaps = 7/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRRLAE   QP SF+FS E+  WV+ +I++YP  R  SAVI LL RAQ+Q G W+ R 
Sbjct: 1   MTVRRLAE--VQPDSFAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M YIRVLEIATFY+ F LSPVG    VQ+CGTTPC+L G + +  V +N+
Sbjct: 59  AIEAVAEKLGMPYIRVLEIATFYSMFNLSPVGEH-FVQLCGTTPCLLAGSDGIKSVLKNR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I + P    +DG  SW EVEC GAC NAPMV I  D +EDLTP+   +++D  + G+   
Sbjct: 118 IGE-PGVVTADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
           +  G Q  R+SS PAGGLT+L+
Sbjct: 175 VTAGSQTGRVSSEPAGGLTALV 196


>gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
 gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
          Length = 208

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/201 (53%), Positives = 135/201 (67%), Gaps = 7/201 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS RRLAEE  QPSSF F+ E+  W+   I++YP  R  S V+P L +AQ+Q + W+ + 
Sbjct: 1   MSTRRLAEE--QPSSFEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQK 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M YIRVLEIATFYT F L PVG + +VQ+CGTTPCML G + LI V   +
Sbjct: 59  AIEKVAQTLGMPYIRVLEIATFYTMFNLEPVG-KFYVQLCGTTPCMLSGSDDLIAVLERR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +  H ++DG  SW EVEC GAC NAPMV I  D YEDLT E  E+++D  + G+   
Sbjct: 118 VGPQ-RHVSADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
           ++ G Q  RISS PAGGLTSL
Sbjct: 175 VKTGSQTGRISSEPAGGLTSL 195


>gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans
           DS-1]
 gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 208

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 105/203 (51%), Positives = 138/203 (67%), Gaps = 7/203 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRL  +  QP+SF+F+ E+  W  + I++YP  +  SA+IPLL RAQEQ +GW+   
Sbjct: 1   MSVRRL--DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M YIR +E+ATFYT F LSPVG   +VQ+CGTTPC LRG ++L EVCR  
Sbjct: 59  AIRHVADMLGMEYIRAIEVATFYTMFNLSPVGEH-YVQLCGTTPCWLRGADELKEVCRKH 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +    ++DG  SW EVEC GACVNAPMV I  D +EDL     E ++    +G+   
Sbjct: 118 IGPEGT-VSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGK--D 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++PGPQ +R +S PAGGLTSL +
Sbjct: 175 VKPGPQNERHASEPAGGLTSLTN 197


>gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15]
 gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000]
 gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15]
 gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000]
          Length = 228

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 135/203 (66%), Gaps = 7/203 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS++S    +   ++YP  R QSAVIP+L  AQ+QEGW+S  A
Sbjct: 1   MSVRRLAKE--QPASFAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L+M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L +V  +KI
Sbjct: 59  IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLRKVLEDKI 118

Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
              P H  ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+   
Sbjct: 119 G--PAHHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGKAP- 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R +S P G + +L D
Sbjct: 176 -KPGSYEGRGASEPKGAIHTLTD 197


>gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31]
 gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31]
          Length = 228

 Score =  201 bits (510), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 132/202 (65%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS ES    +   ++YP  R QSAVIP+L  AQ+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPASFAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L  V + KI
Sbjct: 59  IQEIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKAKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            Q     ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+  + 
Sbjct: 119 GQA-NDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PG    R +S P G + +L D
Sbjct: 176 KPGSYDGRGASEPKGAIHTLTD 197


>gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans
           ORS 2060]
 gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 385

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 132/203 (65%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP SF+F+ E+A W  + I++YP  R  SAVIPLL RAQEQ G W+ + 
Sbjct: 1   MANRRLAPTAEQPESFAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC + G + L  +   +
Sbjct: 61  AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKDLKRMLEER 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H + DGT SW EVEC GAC NAPMV I  D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GHVSPDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++ G QI R SS P G +T+L D
Sbjct: 177 VKTGSQIGRTSSEPLGAVTTLTD 199


>gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
           49814]
 gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
           49814]
          Length = 366

 Score =  194 bits (493), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 6/202 (2%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA 60
           S+RR  + E    SF+F  E+   +   +S+YP  R +SAVIP+L  AQ + +GW+S  A
Sbjct: 3   SIRRF-DIEAGGESFAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPA 61

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L MAYIRV E+ATFYT F++ PVG   H+QVCGTTPCMLRG + L++VC++KI
Sbjct: 62  MREVADRLGMAYIRVYEVATFYTMFRMQPVG-EFHIQVCGTTPCMLRGSDDLMKVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +K  H  ++G LSWEEVEC GACVNAPM  I    YEDL    +  ++D F  G+    
Sbjct: 121 GEKG-HVGANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKNPA- 178

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
            PG + DR +SAP GGLTSLLD
Sbjct: 179 -PGTRADRKNSAPEGGLTSLLD 199


>gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
 gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
          Length = 394

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 131/203 (64%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA  E QP++F+F+ E+A W    I++YP  R  SAVIPLL RAQEQ G W+ + 
Sbjct: 1   MANRRLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC + G ++L     ++
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKELKHYLHDR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H + DG  SW EVEC GAC NAPMV I +D YEDLTPE L  ++D  + G+   
Sbjct: 120 LGPA-GHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++ G Q  R SS P G  T+L D
Sbjct: 177 VKAGSQAGRTSSEPKGAATTLTD 199


>gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
           Py2]
 gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
           Py2]
          Length = 229

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA E  QP SF  + E      ++I++YP  R  SAV+PLL   Q+  G W+   
Sbjct: 1   MSVRRLAAE--QPESFDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA  L MA IRVLEIATFYT F L PVG +  VQ+CGTTPCMLRG E +  VC  K
Sbjct: 59  AIRAVAERLGMANIRVLEIATFYTMFNLEPVG-KYFVQLCGTTPCMLRGAEAIKHVCEKK 117

Query: 120 I-HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           I H++  H ++DGT SW EVEC GAC NAPMV I  D YEDLTPE  E+++D  + G+  
Sbjct: 118 IGHER--HVSADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGR-- 173

Query: 179 TIRPGPQIDRISSAPAGGLTSLLD 202
            ++ GPQ  R  S P GG   L D
Sbjct: 174 PVKVGPQNSRRGSEPEGGARVLSD 197


>gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
 gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
          Length = 202

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 133/202 (65%), Gaps = 9/202 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLAE   QP SF F+ E+  W+ + I++YP  R  SAV+P L +AQ+Q   W+ + 
Sbjct: 1   MSVRRLAEN--QPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQK 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M  IRVLE+ATFYT F L PVG + ++Q+CGTTPCML G + LI+V   +
Sbjct: 59  AIEKVAETLGMPKIRVLEVATFYTMFNLEPVG-KYYIQLCGTTPCMLCGSDDLIKVLERR 117

Query: 120 IHQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +   P  +  +DG  SW EVEC GAC NAPMV I  D YEDLT E  E+++D  + G+  
Sbjct: 118 VG--PQRKVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR-- 173

Query: 179 TIRPGPQIDRISSAPAGGLTSL 200
            ++ G Q  R+SS P GGLTSL
Sbjct: 174 PVKTGSQKGRVSSEPEGGLTSL 195


>gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC
           15444]
 gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 257

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 133/203 (65%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRA 59
           M++RR  + E    SFSF  E+   +    ++YP  + +SAVIP+L  AQ +  GW+S  
Sbjct: 1   MALRRF-DLEAGGDSFSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEP 59

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+ L+M Y+RV E+ATFYT F+L PVG + HVQ+CGTTPC LRG E L EVC  +
Sbjct: 60  AMREVADRLEMPYMRVYEVATFYTMFRLQPVG-KFHVQLCGTTPCQLRGAENLKEVCTRE 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  K ++   D  LSWEEVEC GACVNAPMV I  D YEDLTP+ L +II     G    
Sbjct: 119 IG-KQMYVTDDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNGV--E 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           + PGPQIDR++SAP GG  +L +
Sbjct: 176 VTPGPQIDRVNSAPEGGNATLTE 198


>gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 457

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 129/203 (63%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP SF+FS E+A W    I++YP  R  SAVI LL RAQEQ G W+ RA
Sbjct: 1   MANRRLAPASEQPESFAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M  IRVLE+ATFYT F L PVG R  +QVCGT PC   G   L E+ + +
Sbjct: 61  AIEAVAAELGMPNIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDSCGARGLKEMLQAR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H ++DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPA-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++ G Q  R+SS P G + +L D
Sbjct: 177 VKVGSQTGRVSSEPQGAVNTLTD 199


>gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 202

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 3/197 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           ++   ++P SF+F+ E        +++YP  R QSAV+PLL  AQ QEGWVSRAA+EV+A
Sbjct: 1   MSNHSYEPESFAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +LDMA IRV E+ATFYT +   PVGT  HVQVC   PCMLRG + ++   +  +  +  
Sbjct: 61  EMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDDVVAAAKAALGVEFG 119

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              +DG  +  EVEC GACVNAPM+ I  D YEDLTPE  + +++AF   +G+T +PGPQ
Sbjct: 120 DMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFK--RGETPKPGPQ 177

Query: 186 IDRISSAPAGGLTSLLD 202
             R  S PAGG TSL +
Sbjct: 178 NGRQFSCPAGGPTSLTE 194


>gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 202

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 129/197 (65%), Gaps = 3/197 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           ++   ++P SF+F+ E        I++YP  R QSAV+PLL  AQ QEGWVSRAA+EV+A
Sbjct: 1   MSNHSYEPESFAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAAMEVIA 60

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +LDMA IRV E+ATFYT +   PVGT  HVQVC   PCMLRG ++++   +  +  +  
Sbjct: 61  EMLDMAPIRVEEVATFYTMYNRKPVGTF-HVQVCTNLPCMLRGSDEVVAAAKAALGVEFG 119

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              +DG  +  EVEC GACVNAPM+ I  D YEDL+ E  + +++AF   +G+T +PGPQ
Sbjct: 120 EMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFK--RGETPKPGPQ 177

Query: 186 IDRISSAPAGGLTSLLD 202
             R  S PAGG TSL +
Sbjct: 178 NGRQFSCPAGGPTSLTE 194


>gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
           centenum SW]
 gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
           centenum SW]
          Length = 210

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 128/190 (67%), Gaps = 4/190 (2%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
            SFSF++E+      +I++YPP R QSAV+PLL  AQ Q G W+SR AIE VA++L+M  
Sbjct: 11  GSFSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRPAIEYVADMLEMPR 70

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR +E+A+FYT + L PVG +  VQVC TTPC LRG + ++  C  K+  K     +DG 
Sbjct: 71  IRAMEVASFYTMYNLKPVG-KHFVQVCTTTPCWLRGSDDILHTCEKKLGIKAGETTADGQ 129

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  E EC GACVNAPMV IG   +EDLTPE +E I+DA +  + +T +PGPQ  RI+S 
Sbjct: 130 FTVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALA--RDETPKPGPQNGRIASC 187

Query: 193 PAGGLTSLLD 202
           P+GG T+L +
Sbjct: 188 PSGGPTTLTE 197


>gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
 gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
          Length = 221

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 145/222 (65%), Gaps = 14/222 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP SF+F+++S   +   +++YP ++  SAVIP+L  AQ+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPESFAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A  L+M YIRV E+ATFYT F L PVGT   +QVCGTTPCMLRG  +LI+VC+ +I
Sbjct: 59  IRDIAGRLEMPYIRVYEVATFYTMFNLEPVGTHL-IQVCGTTPCMLRGSGELIDVCKKRI 117

Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175
            ++  H  ++DG  +W EVEC GAC NAPM+ +    G    EDL   +LE ++D  + G
Sbjct: 118 GKQ--HEISADGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAG 175

Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +   I+ GPQ +R +S P G  T +L + S   G + K  K+
Sbjct: 176 K--QIKYGPQSERNASEPHG--TKVLTDPSLYDGSRAKKIKL 213


>gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
 gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
          Length = 221

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 128/207 (61%), Gaps = 5/207 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP SF ++E++  W  + I+++P  R  SAVIP L RAQ+QEGWVS  A+E +A  L M 
Sbjct: 10  QPDSFQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPAMEAIATQLGMP 69

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           YIRV E+ATFYT F L PVGT   VQVCGTTPCMLRG E LIEVC   I  +     S G
Sbjct: 70  YIRVYEVATFYTMFNLKPVGTY-FVQVCGTTPCMLRGSESLIEVCERVIGPQGAITES-G 127

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-QIDRIS 190
            LSW EVEC GAC NAPM  I    Y+DLTPE+ EEI+   +  +G+ + PG     R +
Sbjct: 128 HLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEIL--LTLDKGEAVAPGVFNPARHT 185

Query: 191 SAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           S P G  T+L D +       K  D++
Sbjct: 186 SDPEGDNTTLTDESLYDGSAAKPIDRL 212


>gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
           BJ001]
 gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
           BJ001]
          Length = 412

 Score =  187 bits (476), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 130/203 (64%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +Q+CGT PC   G ++L     ++
Sbjct: 61  AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RFWIQICGTVPCDCCGAKELKAALHDR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H ++DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++ G QI RISS P   + +L D
Sbjct: 177 VKVGSQIGRISSEPKDAVNTLTD 199


>gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
 gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
          Length = 201

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 6/206 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS + +A+   QPSSF+F++E+   + EV+ +YP ++ +SAV+PLL  AQ Q   W+  A
Sbjct: 1   MSGKHVAKN--QPSSFAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI++++++L + YI+V E+ATFYT + L+PVG +  VQVC TTPCM+RG  K++EVC+  
Sbjct: 59  AIQLISDMLGVTYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCMIRGSGKVVEVCKKH 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +K  H N +   SW EVEC GACVNAPMV I  D +EDL  E+ E II  F  G+   
Sbjct: 118 ISEKQGHLNKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGKLPN 177

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205
           I  G Q  R  S P    T+LL  N+
Sbjct: 178 I--GSQSGRKGSEPIQNRTTLLKKNA 201


>gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 222

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 130/201 (64%), Gaps = 7/201 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS RRLAE   QP SF+F+ ES      ++++YP  R  SAVI LL +AQ+Q + W+ R 
Sbjct: 1   MSNRRLAE--IQPDSFAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA++L M YIRVLE+ATFYT F L PVG R ++Q CGTTPC++ G + +  V   +
Sbjct: 59  AIEKVADMLHMPYIRVLEVATFYTMFNLEPVG-RYYIQFCGTTPCLIAGSDDIKAVLEKR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +     SDG  SW+EVEC GAC NAPMV I  D YEDLTPE    ++D  + G+   
Sbjct: 118 VGPEG-QVTSDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
           +R G QI R SS   GGLT+L
Sbjct: 175 VRIGSQIGRTSSEMHGGLTAL 195


>gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
           DM4]
 gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens DM4]
          Length = 412

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L    +  
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115

Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +H++  P  +  +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+
Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175

Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202
              ++ G QI R+SS P   + +L D
Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199


>gi|240137578|ref|YP_002962049.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens AM1]
 gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens AM1]
          Length = 412

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L    +  
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115

Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +H++  P  +  +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+
Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175

Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202
              ++ G QI R+SS P   + +L D
Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199


>gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           PA1]
 gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           chloromethanicum CM4]
 gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           PA1]
 gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 412

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L    +  
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKEL----KAS 115

Query: 120 IHQK--PLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +H++  P  +  +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+
Sbjct: 116 LHERLGPSGKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR 175

Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLD 202
              ++ G QI R+SS P   + +L D
Sbjct: 176 --PVKVGSQIGRVSSEPKDAVNTLTD 199


>gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 202

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 130/203 (64%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS+R+ A+E  QP  F F+ +S     E+IS+YP  + QSAV+ LL  AQ+Q + W+  A
Sbjct: 1   MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +   LDM YI+V E+ATFYT + LSPVG +  +QVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     ++D + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D    G+  T
Sbjct: 118 ISENENELSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +LLD
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198


>gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
 gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
          Length = 226

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 132/214 (61%), Gaps = 14/214 (6%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59
           AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q       +GW+   
Sbjct: 11  AETRARWGAFAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVP 70

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +E +A  LDM Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+NK
Sbjct: 71  VMEYIARQLDMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
              K      DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+   
Sbjct: 130 GLIKG-STTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPK 188

Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210
           I  GPQIDR +S P GG TSL   +++N   RG+
Sbjct: 189 I--GPQIDRQTSCPEGGPTSLPEMVEDNHDYRGQ 220


>gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 202

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 130/203 (64%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS+R+ A+E  QP  F F+ +S     E+IS+YP  + QSAV+ LL  AQ+Q + W+  A
Sbjct: 1   MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +   LDM YI+V E+ATFYT + LSPVG +  +QVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     +++ + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D    G+  T
Sbjct: 118 ISENENELSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +LLD
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198


>gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 241

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 3/203 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   V+ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  H+QVC TTPC LRG ++++ VC+ K+
Sbjct: 90  MHKVADILGLPNMRVYEVATFYTMFMRKPTGTY-HIQVCTTTPCWLRGSDEVMNVCKKKL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P     DG  +  EVEC GACVNAPMV +  D YEDLT +  EEI+D     QG   
Sbjct: 149 GISPGETTKDGKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDTEEILDDLK--QGKVP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
           RPGP+  R +S PAGGLTSL ++
Sbjct: 207 RPGPRNGRFASEPAGGLTSLTED 229


>gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
          Length = 202

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS++R A++  QP +F F+  S   V  ++S+YP  + QSAV+ LL  AQ Q   W+  A
Sbjct: 1   MSLKRPAKD--QPENFEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A  L+M YI+V E+ATFYT + LSPVG    VQVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIAKFLEMPYIKVYEVATFYTMYNLSPVGN-FFVQVCTTTPCMIRGANKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     ++D + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D     +G+T
Sbjct: 118 ISENECELSNDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDKIL--KGET 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +L+D
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLMD 198


>gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
 gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
          Length = 215

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 125/190 (65%), Gaps = 4/190 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70
           +P+SF+F+ ++      +I++YP  +  SA +PLL  AQ Q G W+ R A++ VA++L M
Sbjct: 12  EPTSFTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGM 71

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             IRV E+ATFYT +  +PVG R H+QVC TTPC LRG + ++  C+ K+        +D
Sbjct: 72  PRIRVYEVATFYTMYNKNPVG-RHHIQVCTTTPCWLRGSDDVVHACKRKLGIGMGETTAD 130

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           G  +  EVEC GACVNAP+V IG D YED+ PE +E I+DA +  +G+T +PG QI R S
Sbjct: 131 GQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALA--RGETPKPGSQIGRQS 188

Query: 191 SAPAGGLTSL 200
           S P GG T+L
Sbjct: 189 SEPVGGPTTL 198


>gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1]
 gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1]
          Length = 229

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 14/214 (6%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59
           AE   +   F+++ E+A    ++I+RYPP R QSAV+PLL  AQ Q       +GW+   
Sbjct: 11  AETRARWGGFAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPVP 70

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +E +   L MAYIRV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + ++E C  K
Sbjct: 71  VMEYIGAQLGMAYIRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVLEACYKK 129

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
             +K     +DG  +  EVEC GAC NAPMV I  D YEDLT + +  ++D  + G    
Sbjct: 130 GLKKGA-TTADGLFTLTEVECLGACANAPMVQINDDNYEDLTFDSMTAVLDTLAAGGQPK 188

Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210
           I  GPQ++R +S P GG T+L   +  N   RG+
Sbjct: 189 I--GPQVERQTSCPEGGPTTLQEMVSENHDYRGR 220


>gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
 gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
          Length = 346

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 10/222 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS RR+A E  QP SF+F+E+S   V   +++YP  R  SAVIPLL  AQ+Q+ WVS  A
Sbjct: 1   MSARRIAAE--QPESFAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A    M YIRV E+ATFYT F L   G +  +QVCGTTPC LRG + L  VC  KI
Sbjct: 59  MREIAARCGMPYIRVYEVATFYTMFNLEQTG-KHLIQVCGTTPCWLRGADDLKAVCEKKI 117

Query: 121 HQKPL-HRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175
            +K   H +SDG L+WEEVEC GAC NAPMV I    G   YEDLT E LE+++D    G
Sbjct: 118 GKKGREHVSSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAG 177

Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +   ++ GP   R  S P       L + S   G + K  K+
Sbjct: 178 K--EVKAGPISGRSCSEPTQATVKTLVDESLYDGSRAKKIKL 217


>gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
 gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
          Length = 223

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 128/212 (60%), Gaps = 19/212 (8%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            +F F+E      ++ I+RYP  R +SAV+PLL  AQ Q       +GW+    IE VA+
Sbjct: 18  GAFEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVAD 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRVLE+A+FY  + + PVG + HVQVCGTTPCMLRG + L E C+ +  +K  H
Sbjct: 78  YLDMPVIRVLEVASFYFMYNMVPVG-KYHVQVCGTTPCMLRGSDGLFETCKKRGMKKG-H 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRPG 183
            + DG  +  EVEC G C  APMV I  D YEDLTPERL+EI+D  + G   +  T  PG
Sbjct: 136 VSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDEILDELAAGKQPKSGTQEPG 195

Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRGKKK 212
               R +S PAGG T+L   +D N   RG+ K
Sbjct: 196 ----RHTSEPAGGPTTLKEMVDANHDYRGEWK 223


>gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
 gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
          Length = 222

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/214 (45%), Positives = 131/214 (61%), Gaps = 14/214 (6%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59
           AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q       +GW+   
Sbjct: 11  AETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPVP 70

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+NK
Sbjct: 71  VMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
              K      DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+   
Sbjct: 130 GLVKG-GTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGKQPR 188

Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRGK 210
           I  GPQIDR +S P GG T+L   +  N   RG+
Sbjct: 189 I--GPQIDRQTSCPEGGPTTLKEMVGENHDYRGE 220


>gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
 gi|115950058|ref|XP_001178801.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
          Length = 242

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 124/202 (61%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R ++     + F F+EE+   VN++I+ YP     +A +P+L  AQ Q GW   +A
Sbjct: 31  LFVHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL M  +RV E+ATFYT F  +PVG + H+Q+C TTPCMLR  + ++EV   K+
Sbjct: 91  MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDL  + +EEIID    G+  T 
Sbjct: 150 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 207

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R +S P GGLTSL+D
Sbjct: 208 KPGPRNARFASEPEGGLTSLID 229


>gi|307293266|ref|ZP_07573112.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881332|gb|EFN12548.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 129/213 (60%), Gaps = 14/213 (6%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59
           AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q        GW+   
Sbjct: 11  AETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPVP 70

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+NK
Sbjct: 71  VMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKNK 129

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
              K      DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+   
Sbjct: 130 GLVKG-GTTPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGKQPK 188

Query: 180 IRPGPQIDRISSAPAGGLTSL---LDNNSKKRG 209
           I  GPQI+R +S P GG T+L   +  N   RG
Sbjct: 189 I--GPQIERQTSCPEGGPTTLKEMVSGNHDYRG 219


>gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC
           30864]
          Length = 255

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 119/198 (60%), Gaps = 11/198 (5%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           ++   F F+ E+      +I+ YPP    +A IPLL  AQ Q GW+  +A+  VA +LDM
Sbjct: 46  YKDEPFEFTAENLTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWLPLSAMNTVAKMLDM 105

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRN 128
           A IRV E A+FYT F    +G + HVQVC TTPC+L GC  +K+++  +  +   P    
Sbjct: 106 APIRVYETASFYTMFNREKIG-KYHVQVCTTTPCLLGGCGSDKIMKAVQKNLGVHPGGTT 164

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID- 187
           SDG  ++ EVEC GACVNAPM+ I  D YEDLTPE  E+I+D F   +GD  +PGPQ D 
Sbjct: 165 SDGLFTFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFR--RGDRPKPGPQKDP 222

Query: 188 -----RISSAPAGGLTSL 200
                R S  P  GLT+L
Sbjct: 223 ATGKLRKSCEPVDGLTTL 240


>gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 216

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 126/214 (58%), Gaps = 10/214 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS +  A E  +P+ F F ++S   +  V+++YPP R  S V+PLL   Q+Q G      
Sbjct: 1   MSAQPSAPEGAEPTHFEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           W+ R A++VVA  L+MA IRV E+ATFY  F   P+G R H+QVC TT C LRG + +  
Sbjct: 61  WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVTA 119

Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+     K     S DG  +  EVEC GAC NAP++ +  D YEDL   R EE+I A  
Sbjct: 120 ACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALK 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207
            G+  T  PGP IDR++SAPAGG   L+ + ++K
Sbjct: 180 RGERPT--PGPTIDRLNSAPAGGRKVLVGDMAQK 211


>gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 244

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 117/200 (58%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  ++      F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 33  LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L M  +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E +  V   K+
Sbjct: 93  MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   + DG  +   VEC GACVNAPMV +  D YEDL  + +EEI+D+    QG   
Sbjct: 152 GIGPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDLEAKDVEEILDSLK--QGKRP 209

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           +PGP+  R+S  P GGLTSL
Sbjct: 210 KPGPRNGRLSCEPKGGLTSL 229


>gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes
           aegypti]
 gi|108878788|gb|EAT43013.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
          Length = 240

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   VN +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 29  LFVHRDTAEDNPSIPFEFTEENKKRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  HVQVC TTPC LRG ++++  C+ K+
Sbjct: 89  MHRVADILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTTTPCWLRGSDEIMTACKEKL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ +  D YEDLT +   EI+      QG   
Sbjct: 148 GIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLK--QGKVP 205

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           RPGP+  R +S P GGLTSL +
Sbjct: 206 RPGPRNGRFASEPTGGLTSLTE 227


>gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
 gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
          Length = 269

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 115/188 (61%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
           F F+EE+A    E+IS YP    ++AVIPLL   Q Q  GWVS + +  VA +L+M  +R
Sbjct: 69  FEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLGQRQNSGWVSISVMNYVAKLLEMPPMR 128

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT F   PVG +  +Q+C TTPCML GC   K++E   +K+  K      D  
Sbjct: 129 VYEVATFYTMFNREPVG-KYFLQLCTTTPCMLGGCGSTKILEALESKLGIKAGQTTKDNK 187

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPM+ I  D +EDLTPE +  IID  S   G+ ++PGPQ  R SS 
Sbjct: 188 FTLVEVECLGACANAPMIQINDDFFEDLTPESMNNIIDKLS--NGEKVKPGPQSGRHSSE 245

Query: 193 PAGGLTSL 200
           PA G T+L
Sbjct: 246 PANGRTAL 253


>gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 234

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 3/196 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M V R +E     + F F+ E+   +  +IS+YPP     A+IP+L  AQ Q GW+  +A
Sbjct: 23  MVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLAQRQHGWLPISA 82

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +A +RV E+ATFY+ F   P+G +  VQVCGTTPCMLRG E ++E    K+
Sbjct: 83  MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 141

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      DG  S  EVEC GACVNAPMV I  D YEDLTPE + +I+D F  G+    
Sbjct: 142 GIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTPEDISDILDEFKAGKRP-- 199

Query: 181 RPGPQIDRISSAPAGG 196
           +PGP+  R ++ P  G
Sbjct: 200 KPGPRSGRTAAEPING 215


>gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
 gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
          Length = 257

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 119/186 (63%), Gaps = 4/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F F+ E+     E+I+RYPP   ++AVIPLL   Q Q +GW S + +  VA +L M  +R
Sbjct: 59  FEFNAENLKRAEEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVARLLGMPPMR 118

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F   P+G    VQVC TTPCMLRG   ++    N+++ KP   + DG  +
Sbjct: 119 VYEVATFYTMFNREPIGEH-FVQVCTTTPCMLRGSTDILNTVCNELNVKPGGTSKDGKFT 177

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
             EVECQGAC NAPM+++G D YEDLTPE  + I+ AFS  +G+  + GPQ +R +S  +
Sbjct: 178 VVEVECQGACSNAPMMVVGDDFYEDLTPESTKRILAAFS--KGEKPKAGPQSNRQTSENS 235

Query: 195 GGLTSL 200
            GLT+L
Sbjct: 236 AGLTAL 241


>gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 199

 Score =  167 bits (424), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 129/205 (62%), Gaps = 8/205 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS + +A++  QP SF FS E+    + ++ +YP  R +SAV+PLL  AQ+Q +GW+S A
Sbjct: 1   MSGKHVAKD--QPKSFIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A++L++ YI+V E+ATFYT + L+PVG +  VQVC TTPC +RG  K++E C+  
Sbjct: 59  AVQYIADLLEVPYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCAIRGSGKIVEACKKY 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I     H + D   SW EVEC GACVNAPM+ I +D YEDL     E+I  +F   + D 
Sbjct: 118 ISSNEGHLSEDKKSSWIEVECLGACVNAPMIQINEDYYEDLDAISAEKIFKSF---KDDN 174

Query: 180 I-RPGPQIDRISSAPAGGLTSLLDN 203
           + + G Q  R  S P     +LL N
Sbjct: 175 LPKLGSQKGRKGSEPIKQRLTLLKN 199


>gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
 gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
          Length = 244

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA ILD++ +RV E+ATFYT F   PVG + H+Q+C TTPCML   + +++  +NK+  
Sbjct: 95  KVAEILDVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K     +DG  +  EVEC GACVNAPMV I  + YEDL P  +E IID    G+     P
Sbjct: 154 KVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP+  R S  PAGGLTSL +
Sbjct: 212 GPRNGRFSCEPAGGLTSLTE 231


>gi|126321913|ref|XP_001370300.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV2
           [Monodelphis domestica]
          Length = 239

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 28  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKSYPEGHKAAAVLPVLDLAQRQNGWLPISA 87

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 88  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 146

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SD   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID      G+  
Sbjct: 147 GIKVGETTSDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKA--GNVP 204

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 205 KPGPRSGRFSCEPAGGLTSLTE 226


>gi|194214480|ref|XP_001489155.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Equus caballus]
          Length = 246

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 121/203 (59%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 35  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 94

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 95  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 153

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIIDA   G   TI
Sbjct: 154 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDALKAG---TI 210

Query: 181 -RPGPQIDRISSAPAGGLTSLLD 202
            +PGP+  R S  PAGGLTSL +
Sbjct: 211 PKPGPRSGRFSCEPAGGLTSLTE 233


>gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 245

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 118/188 (62%), Gaps = 5/188 (2%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYI 73
           +F F  E+     E+IS YPP   ++AVIPLL   Q Q +GW S + +  VAN+L M  +
Sbjct: 45  AFEFDTENMKRAQEIISFYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVANLLGMPPM 104

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGT 132
           RV E+ATFYT F   P+G    VQVC TTPCMLRG  +++  VC +    KP    SDG 
Sbjct: 105 RVYEVATFYTMFNREPIG-ENFVQVCTTTPCMLRGSPEILNTVCDHLGGIKPGQTTSDGK 163

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVECQGAC NAPM+++G D YEDLTPE  ++I+ AF+ GQ    + GPQ  R +S 
Sbjct: 164 FTVVEVECQGACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQKP--KAGPQSGRRTSE 221

Query: 193 PAGGLTSL 200
            + GLTSL
Sbjct: 222 NSAGLTSL 229


>gi|118086790|ref|XP_001232141.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) isoform 1 [Gallus gallus]
 gi|118086792|ref|XP_424129.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) isoform 2 [Gallus gallus]
          Length = 245

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +IS YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 34  LFVHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSAAVMAVLDLAQRQHGWLPISA 93

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 94  MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 152

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 153 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 210

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 211 KPGPRSGRFSCEPAGGLTSLTE 232


>gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 201

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 119/189 (62%), Gaps = 3/189 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +SF+F+ E+     ++I++YP  R QSAV+PLL  AQ Q GW S A IE +A +L+MA I
Sbjct: 8   TSFAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPI 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ TFYT +   PVG + HVQVC    C+LRG + + E  +  +  +     +DG  
Sbjct: 68  RVQEVVTFYTMYNQKPVG-QYHVQVCTNICCLLRGSDGVGETVKELLGVEWGETTADGKF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GACVNAPM+ I  D YEDLTPE  + +++A    +G+T  PGPQ  R  SAP
Sbjct: 127 TLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALK--RGETPAPGPQGGRQFSAP 184

Query: 194 AGGLTSLLD 202
            GG T+L D
Sbjct: 185 EGGPTTLGD 193


>gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase-like [Bos taurus]
          Length = 254

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 43  LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 102

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 103 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 161

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 162 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 219

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 220 KPGPRSGRFSCEPAGGLTSLTE 241


>gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus]
          Length = 212

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 1   LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 61  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 119

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 120 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 177

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 178 KPGPRSGRFSCEPAGGLTSLTE 199


>gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Xenopus
           (Silurana) tropicalis]
 gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana)
           tropicalis]
 gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus
           (Silurana) tropicalis]
          Length = 243

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/198 (44%), Positives = 114/198 (57%), Gaps = 3/198 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ E+   +  +I  YP      AVIP+L  AQ Q GW+  +A+ 
Sbjct: 34  VHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHKAGAVIPVLDLAQRQHGWLPISAMN 93

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L+M  +RV E+ATFYT F   PVG + HVQ+C TTPCML   + ++E    K+  
Sbjct: 94  KVAEVLEMPAMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCMLCNSDSILEAIEKKLGI 152

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                 SD   +  EVEC GACVNAPMV I  + YEDLTP+ +E IID    G+  T  P
Sbjct: 153 HVGETTSDKLFTLTEVECLGACVNAPMVQINDNYYEDLTPKDIENIIDELKAGKVPT--P 210

Query: 183 GPQIDRISSAPAGGLTSL 200
           GP+  R S  PAGGLTSL
Sbjct: 211 GPRNGRFSCEPAGGLTSL 228


>gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 216

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 10/215 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS     ++  QPSSF+F  ES   +  ++ +YPP R  S  +PLL  AQ+Q G      
Sbjct: 1   MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ +A  L++A IRV E+ATFY  F   P+G R H+QVC TT C LRG + ++ 
Sbjct: 61  WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 119

Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+         ++S DG  +  EVEC G C NAP++ +  D YEDL   R  E+I+A  
Sbjct: 120 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             +GD  +PGP IDR+ +APAGG  +L D+ +  R
Sbjct: 180 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSR 212


>gi|224046085|ref|XP_002190748.1| PREDICTED: putative NADH dehydrogenase flavoprotein 2 [Taeniopygia
           guttata]
 gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata]
          Length = 244

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +I+ YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 33  LFVHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQRQHGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 93  MNKVAEVLEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 152 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +DD
Sbjct: 210 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRDD 243


>gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
 gi|128865|sp|P04394|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH dehydrogenase subunit
           II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa
           subunit; Flags: Precursor
 gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus]
 gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus]
 gi|296473660|gb|DAA15775.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
          Length = 249

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2, 24kDa [Canis familiaris]
          Length = 249

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  +I  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Nomascus leucogenys]
          Length = 249

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 219

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 10/215 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS     ++  QPSSF+F  ES   +  ++ +YPP R  S  +PLL  AQ+Q G      
Sbjct: 4   MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 63

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ +A  L++A IRV E+ATFY  F   P+G R H+QVC TT C LRG + ++ 
Sbjct: 64  WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 122

Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+         ++S DG  +  EVEC G C NAP++ +  D YEDL   R  E+I+A  
Sbjct: 123 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 182

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             +GD  +PGP IDR+ +APAGG  +L D+ +  R
Sbjct: 183 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSR 215


>gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
 gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
          Length = 244

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 3/200 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   +    + F F+EE+ + +  +IS YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPDNNADTPFDFTEENKMRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++A +RV E+ATFYT F   PVG +  +Q+C TTPCML   + ++E  +NK+  
Sbjct: 95  KVAEVLEVAPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K      D   +  EVEC GACVNAPMV I  + YEDL+P+ +E+IID    G+     P
Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGR--VPLP 211

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP+  R S  PAGGLTSL++
Sbjct: 212 GPRNGRFSCEPAGGLTSLIE 231


>gi|109121568|ref|XP_001099724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Macaca mulatta]
          Length = 249

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii]
          Length = 213

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--MP 189

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTE 211


>gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis]
          Length = 451

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 204 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 263

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 264 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 322

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 323 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 380

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 381 KPGPRSGRFSCEPAGGLTSLTE 402


>gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2
           [Oryctolagus cuniculus]
          Length = 249

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii]
          Length = 213

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTE 211


>gi|221127644|ref|XP_002160547.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial [Hydra magnipapillata]
          Length = 243

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 115/200 (57%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E     + F F+EE+    + +IS YP     +A IPLL   Q Q GWV  + 
Sbjct: 32  LFVHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPLSG 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L M  +RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++ V + K+
Sbjct: 92  MNYVAKMLQMPEMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLCNSDSIMSVIKEKL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P     D   +  EVEC GACVNAPMV I  + YEDL P  + EII+  S  +G   
Sbjct: 151 QINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIE--SLAKGIIP 208

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           +PGP+  R +S PAGGLTSL
Sbjct: 209 KPGPRSGRFASEPAGGLTSL 228


>gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 249

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 222

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/210 (43%), Positives = 124/210 (59%), Gaps = 19/210 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            SF+++ E+A    E+++RYP  R +SAV+PLL  AQ Q       +GW+    +E VA 
Sbjct: 18  GSFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVGAEENTQGWLPMPVMEYVAR 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRVLE+ATFYT + + PVG R HVQVCGTTPCMLRG + ++  C  +  +K  H
Sbjct: 78  YLDMPIIRVLEVATFYTMYNIQPVG-RFHVQVCGTTPCMLRGSDDILSACYARGLKKG-H 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---QGDTIRPG 183
              DG  +  EVEC G C +APMV I  D YEDLT +RL  ++D  + G   +  T  PG
Sbjct: 136 TTKDGLFTLTEVECMGNCSSAPMVQINDDNYEDLTADRLNFVLDELAAGRQPKAGTQEPG 195

Query: 184 PQIDRISSAPAGG---LTSLLDNNSKKRGK 210
               R +  P GG   LT+++  N   RG+
Sbjct: 196 ----RHTVEPVGGPTSLTAMVTENHDYRGE 221


>gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Callithrix jacchus]
          Length = 249

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 244

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+EE+   +  +IS YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTAENNPETPFEFTEENKKRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPLSAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++  +RV E+ATFYT F   PVG +  +Q+C TTPCML   + ++E  +NK+  
Sbjct: 95  KVAEVLEIPPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEALQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+     P
Sbjct: 154 KVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGR--VPPP 211

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP+  R S  PAGGLTSL +
Sbjct: 212 GPRGGRFSCEPAGGLTSLTE 231


>gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Sporisorium reilianum]
          Length = 268

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
           F F+ E+A    E+IS YP    ++AVIPLL   Q Q  GWVS + +  VA +LDM  +R
Sbjct: 68  FEFNAENAKMAQEIISHYPSQYKKAAVIPLLDLGQRQNSGWVSISVMNYVAKLLDMPPMR 127

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT F   PVG +  +Q+C TTPCML GC   K++E   +K+  K      D  
Sbjct: 128 VYEVATFYTMFNREPVG-QFFLQLCTTTPCMLGGCGSTKILEALEDKLGIKAGQTTKDKK 186

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPM+ I  D YEDLTPE +  IID  ++GQ   ++PGPQ  R SS 
Sbjct: 187 FTLVEVECLGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQ--KVKPGPQSGRHSSE 244

Query: 193 PAGGLTSL 200
            A G T+L
Sbjct: 245 AATGRTAL 252


>gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx]
          Length = 213

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEXIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           +PGP+  R S  PAGGLTSL
Sbjct: 190 KPGPRSGRFSCEPAGGLTSL 209


>gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca]
          Length = 209

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +
Sbjct: 11  TPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLKVPPM 70

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   
Sbjct: 71  RVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLF 129

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    +PGP+  R S  P
Sbjct: 130 TLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKPGPRSGRFSCEP 187

Query: 194 AGGLTSLLD 202
           AGGLTSL +
Sbjct: 188 AGGLTSLTE 196


>gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
 gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
          Length = 236

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E     + F F+ E+   +  ++S+YPP     A+IP+L  AQ Q GW+  +A
Sbjct: 25  LVVHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLAQRQHGWLPISA 84

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +A +RV E+ATFY+ F   P+G +  VQVCGTTPCMLRG E ++E    K+
Sbjct: 85  MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 143

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SDG  +  EVEC GACVNAPMV I  D YEDLTP+ + +I+D F  G+    
Sbjct: 144 GIKVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTPKDISDILDEFKAGKRP-- 201

Query: 181 RPGPQIDRISSAPAGG 196
           +PGP+  R ++ P  G
Sbjct: 202 KPGPRSGRTAAEPISG 217


>gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
 gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
          Length = 208

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP++F+F+ E+      ++++YP  R +S V+PLL  AQ Q+GWVS AAIE V  +    
Sbjct: 10  QPATFAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTP 69

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            +RVLE+ATFYT ++LSP G R H++VC   PC LRG ++++   R+++  +      DG
Sbjct: 70  RMRVLEVATFYTMYKLSPKG-RHHIEVCTNLPCWLRGSDEILRAVRDELGIEVGGETDDG 128

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
             S  E EC GACVNAPM+ IG D YEDLT E + E++     G+   + PG Q  R  +
Sbjct: 129 LFSLAEAECLGACVNAPMLQIGDDYYEDLTYESVRELVRKLKVGE--PVTPGSQSGRQGA 186

Query: 192 APAGGLTSL 200
            P GG T+L
Sbjct: 187 CPEGGPTTL 195


>gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 222

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/210 (43%), Positives = 125/210 (59%), Gaps = 19/210 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            +F+F+ +      + ++RYP  R +SAV+PLL  AQ Q       +GW+    IE VAN
Sbjct: 18  GNFAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVGEETDTQGWLPLPVIEYVAN 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRVLE+ATFY  + ++PVG + HVQVCGTTPCMLRG + +I  C+ +  +K   
Sbjct: 78  YLDMPVIRVLEVATFYFMYNMTPVG-KYHVQVCGTTPCMLRGSDDIIAACKKRGMKKG-E 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183
            + DG  +  EVEC G C  APMV I  D YEDLT ERL+ ++DA + G+     T  PG
Sbjct: 136 VSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVLDALAKGEQPKTGTQEPG 195

Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRGK 210
               R +S P+GG T+L   +  N   RG+
Sbjct: 196 ----RHTSEPSGGPTTLKEMVTENHDYRGE 221


>gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Meleagris gallopavo]
          Length = 243

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +I  YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 32  LFVHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 92  MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 151 GIEVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 208

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           +PGP+  R S  PAGGLTSL
Sbjct: 209 KPGPRSGRFSCEPAGGLTSL 228


>gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 270

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 122/208 (58%), Gaps = 9/208 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E      F FSE++   + E+I+RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LHVHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF------ 172
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++E++ A       
Sbjct: 158 HLGITPGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKELLTALKESATA 217

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSL 200
           ++GQ     PGP   RIS   + GLT+L
Sbjct: 218 TSGQVKIPAPGPLSGRISCENSAGLTNL 245


>gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus
           furcatus]
          Length = 244

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 118/198 (59%), Gaps = 3/198 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA IL+++ +RV E+ATFYT F   PVG + H+Q+C TTPCML   + +++  +NK+  
Sbjct: 95  KVAEILEVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +     +DG  +  EVEC GACVNAPMV I  + YEDL P  +E IID    G+     P
Sbjct: 154 EVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPPP 211

Query: 183 GPQIDRISSAPAGGLTSL 200
           GP+  R S  PAGGLTSL
Sbjct: 212 GPRNGRFSCEPAGGLTSL 229


>gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus
           mordax]
          Length = 244

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 117/190 (61%), Gaps = 5/190 (2%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F++E+   +  +IS YP    Q+A IP+L  AQ Q GW+  +A+  VA +L++  +
Sbjct: 46  TPFEFTDENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISAMNKVAEVLEVPPM 105

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+  K      D   
Sbjct: 106 RVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCNSDSILEAIKNKLGIKVGETTPDKMF 164

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-RPGPQIDRISSA 192
           S  EVEC GACVNAPMV I  + YEDL+P+ +EEIID    G   TI  PGP+  R S  
Sbjct: 165 SLIEVECLGACVNAPMVQINDNYYEDLSPKDIEEIIDELKAG---TIPAPGPRNGRFSCE 221

Query: 193 PAGGLTSLLD 202
           PAGGLT L +
Sbjct: 222 PAGGLTCLTE 231


>gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
 gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
          Length = 222

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 125/208 (60%), Gaps = 19/208 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            +F F+  +    ++ I++YP  R +SAV+PLL  AQ Q       +GW+    +E VA+
Sbjct: 18  GNFVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVGEETNTQGWLPLPVMEYVAD 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRV+E+ATFY  + L PVG + HVQVCGTTPCMLRG +++I  C+ +  +K   
Sbjct: 78  YLDMPVIRVVEVATFYFMYNLQPVG-KYHVQVCGTTPCMLRGSDEIIAACKKRGMEKG-R 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183
            ++DG  +  EVEC G C  APMV I  D YEDLTPERL+ ++DA + G+     T  PG
Sbjct: 136 VSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVLDALAAGEQPKTGTQEPG 195

Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKR 208
               R +S P GG T+L   +D N   R
Sbjct: 196 ----RHTSEPLGGPTTLKEMVDANHDYR 219


>gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Anolis carolinensis]
          Length = 289

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  +++ YP     +AVIP+L  AQ Q GW+  +A
Sbjct: 78  LFVHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKSAAVIPVLDLAQRQHGWLPISA 137

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL M  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 138 MNKVAEILKMPPMRVYEVATFYTMYNRKPVG-KHHIQICTTTPCMLRDSDSILEAIQQKL 196

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SD   +  EVEC GACVNAPMV I  + YEDLT + +E+I+D    G+    
Sbjct: 197 GIKVGETTSDQLFTLTEVECLGACVNAPMVQINDNYYEDLTTKDIEDILDELKAGK--VP 254

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  P GGLTSL +
Sbjct: 255 KPGPRNGRFSCEPVGGLTSLTE 276


>gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C]
 gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
 gi|122990931|sp|Q1RJJ1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C]
 gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
          Length = 167

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++FSF +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L PVG + H+QVC TTPC LRG + +++ C+ K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKPVG-KNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S  E+EC GACVNAP+V I  D YEDLTPE++E IID  
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKL 164


>gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 240

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M   R  +E+     F FS+E+   ++ +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 29  MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA++LD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG + +I   + K+
Sbjct: 89  MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + DG  +  EVEC GACVNAPM+ +  D +EDLT + +E IID    G+  T 
Sbjct: 148 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGKTPT- 206

Query: 181 RPGPQIDRISSAPAGGLTSL 200
            PGP+  R +S P  GLTSL
Sbjct: 207 -PGPRSSRYASEPMDGLTSL 225


>gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Rattus norvegicus]
 gi|83305118|sp|P19234|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus]
 gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a
           [Rattus norvegicus]
          Length = 248

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  D YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R    PAGGLTSL +
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235


>gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3)
           [Rattus norvegicus]
          Length = 241

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 90  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  D YEDLTP+ +EEIID    G+    
Sbjct: 149 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R    PAGGLTSL +
Sbjct: 207 KPGPRSGRFCCEPAGGLTSLTE 228


>gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Macaca mulatta]
          Length = 249

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCML   + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLGNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R    PAGGLTSL +
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235


>gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 219

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 11/222 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS +     + +P++F+F  ES   + +++++YPP R  S VIPLL   Q+Q G      
Sbjct: 1   MSAQSNIPHDAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ VA+ L+MA IRV E+ATFY  F   P+G + H+QVC TT C LRG + +  
Sbjct: 61  WVPRVAMDAVAHRLEMAPIRVYEVATFYLMFNTKPIG-KYHLQVCTTTSCWLRGSDDVTA 119

Query: 115 VCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+           S DG  +  EVEC GAC NAP++ +  D YED+   R  E+I A  
Sbjct: 120 ACKAATGIDAFGGTSADGMFTMTEVECLGACANAPILQVDDDYYEDMDGPRTTELIAALR 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +G+  + GP IDR+ SAP GG  +LLD ++  +G   +D+
Sbjct: 180 --RGERPKAGPTIDRMDSAPVGGRKTLLD-SAAGQGTGTQDN 218


>gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Mus musculus]
 gi|146345463|sp|Q9D6J6|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus]
 gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus]
 gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus]
 gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus]
 gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus]
 gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R    PAGGLTSL +
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE 235


>gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum]
          Length = 212

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M   R  +E+     F FS+E+   ++ +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 1   MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA++LD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG + +I   + K+
Sbjct: 61  MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 119

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + DG  +  EVEC GACVNAPM+ +  D +EDLT + +E IID    G+  T 
Sbjct: 120 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 177

Query: 181 RPGPQIDRISSAPAGGLTSL 200
            PGP+  R +S P  GLTSL
Sbjct: 178 TPGPRSSRYASEPMDGLTSL 197


>gi|115502496|sp|Q0MQI8|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|115502498|sp|Q0MQI7|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla]
 gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus]
          Length = 249

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Pan troglodytes]
 gi|115502497|sp|Q0MQI9|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes]
          Length = 249

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens]
 gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus]
          Length = 259

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 48  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 224

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R    PAGGLTSL +
Sbjct: 225 KPGPRSGRFCCEPAGGLTSLTE 246


>gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens]
          Length = 249

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGESTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Danio rerio]
 gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio]
          Length = 244

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 117/200 (58%), Gaps = 3/200 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ E+   V  +I+ YP     +A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPENNPDTPFEFTPENMKRVEAIINNYPEGHKAAATIPVLDLAQRQNGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L +A +RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+  
Sbjct: 95  KVAEVLGIAPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K     +D   +  EVEC GACVNAPMV I  + YEDL P  +E+IID    G+     P
Sbjct: 154 KVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGR--VPPP 211

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP+  R S  PAGGLTSL +
Sbjct: 212 GPRSGRFSCEPAGGLTSLTE 231


>gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 265

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   +    + F F+ ++   ++ +IS YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 56  VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 115

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+  
Sbjct: 116 KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGI 174

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K     +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++IID    GQ     P
Sbjct: 175 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPP 232

Query: 183 GPQIDRISSAPAGGLTSL 200
           GP+  R S  PAGGLTSL
Sbjct: 233 GPRNGRFSCEPAGGLTSL 250


>gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Homo sapiens]
 gi|20455499|sp|P19404|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
          Length = 249

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Pongo abelii]
          Length = 249

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKIGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|149641744|ref|XP_001507932.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Ornithorhynchus anatinus]
          Length = 266

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +
Sbjct: 68  TPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLGVPPM 127

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFYT +   PVG + HVQVC TTPCMLR  + ++E  + K+  K      D   
Sbjct: 128 RVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRDSDSILEAIQKKLGIKVGETTPDKLF 186

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    +PGP+  R S  P
Sbjct: 187 TLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPGPRSGRFSCEP 244

Query: 194 AGGLTSLLD 202
           AGGLTSL +
Sbjct: 245 AGGLTSLTE 253


>gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|108878789|gb|EAT43014.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
          Length = 207

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/196 (43%), Positives = 113/196 (57%), Gaps = 11/196 (5%)

Query: 15  SFSFSEESAIW--------VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           S  F+   A W        VN +++ YP    + A+IPLL  AQ Q GW+  +A+  VA+
Sbjct: 2   SMRFAHVLAAWLHQGHSQRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVAD 61

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           IL +  +RV E+ATFYT F   P GT  HVQVC TTPC LRG ++++  C+ K+      
Sbjct: 62  ILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTTTPCWLRGSDEIMTACKEKLGIGAGE 120

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
              DG  +  EVEC GACVNAPM+ +  D YEDLT +   EI+      QG   RPGP+ 
Sbjct: 121 TTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLK--QGKVPRPGPRN 178

Query: 187 DRISSAPAGGLTSLLD 202
            R +S P GGLTSL +
Sbjct: 179 GRFASEPTGGLTSLTE 194


>gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Sus scrofa]
 gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa]
          Length = 249

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 116/202 (57%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F  E+   +      YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
 gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
          Length = 209

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 112/185 (60%), Gaps = 3/185 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+E+S     ++I+ YP     +A+IPLL  AQ Q GW+   A+  VA+ L ++ +R+
Sbjct: 13  FEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNYVADYLSVSRMRI 72

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT F   P+G + H+Q+C TTPCMLR  + ++ V ++K+  +      DG  + 
Sbjct: 73  YEVATFYTMFNRYPMG-KYHIQICTTTPCMLRDSDSILNVIKSKLGIEIGQTTKDGLFTL 131

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            EVEC GACVNAPMV I  D YEDLT   +EEI+D+   G   T   GP+  R  + P  
Sbjct: 132 SEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAGSKPTA--GPRSGRKCAEPIT 189

Query: 196 GLTSL 200
           GLTSL
Sbjct: 190 GLTSL 194


>gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox
           lucius]
          Length = 244

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 117/198 (59%), Gaps = 3/198 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ +    ++ +IS YP    Q+A IP+L  AQ Q GW+  +A  
Sbjct: 35  VHRDTPENNPDTPFEFTADDLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISATN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++  +RV E+ATFYT     PVG + H+Q+C TTPCML   + ++E  +NK+  
Sbjct: 95  KVAEVLEVPPMRVYEVATFYTMLLRQPVG-KYHIQICTTTPCMLCNSDSILEAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K     +D   S  EVEC GACVNAPMV I  + YEDLTP+ +++IID    G+     P
Sbjct: 154 KVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLTPKDMDKIIDELKAGK--IPPP 211

Query: 183 GPQIDRISSAPAGGLTSL 200
           GP+  R S  PAGGLTSL
Sbjct: 212 GPRNGRFSCEPAGGLTSL 229


>gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM
           12444]
          Length = 222

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 125/208 (60%), Gaps = 15/208 (7%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
             F ++ E+A    ++++RYP  R +SAV+PLL  AQ Q       +GW+    +E VA+
Sbjct: 18  GGFEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQGWLPIPVMEYVAS 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRV+E+ATFYT + ++P+G R HVQVCGTTPCMLRG + ++  C+ K  +K  H
Sbjct: 78  YLDMPVIRVVEVATFYTMYNIAPIG-RFHVQVCGTTPCMLRGSDDILAACKGKGLKKG-H 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
              DG  +  EVEC G C +APMV I  D YEDLT   +E I+D  +  +G   + G Q+
Sbjct: 136 TTPDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELA--EGKQPKTGTQL 193

Query: 187 -DRISSAPAGG---LTSLLDNNSKKRGK 210
             R +  PAG    LT+++  N   RG+
Sbjct: 194 PGRHTVEPAGALSNLTAMVTENHDYRGE 221


>gi|119113027|ref|XP_308018.3| AGAP002170-PA [Anopheles gambiae str. PEST]
 gi|116132852|gb|EAA03768.3| AGAP002170-PA [Anopheles gambiae str. PEST]
          Length = 231

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ ++      +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 20  LFVHRDTPEDNASIPFEFTADNQKRAEAILNIYPEGHKRGAMIPLLDLAQRQHGWLPLSA 79

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL + ++RV E+ATFYT F   P G + H+QVC TTPC LRG +++++VC+  +
Sbjct: 80  MHKVADILGLPHMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEVLDVCKKNL 138

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ +  D YEDL+    EEI+++    QG   
Sbjct: 139 GIGVGETTKDGKFTISEVECLGACVNAPMLAVNDDYYEDLSVADTEEILNSLK--QGQQP 196

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           RPGP+  R +S P G LTSL
Sbjct: 197 RPGPRNGRYASEPVGQLTSL 216


>gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo
           salar]
          Length = 244

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   +    + F F+ ++   ++ +IS YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+  
Sbjct: 95  KVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K     +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++I+D    G+     P
Sbjct: 154 KAGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQILDELKAGK--VPPP 211

Query: 183 GPQIDRISSAPAGGLTSL 200
           GP+  R S  PAGGLTSL
Sbjct: 212 GPRNGRFSCEPAGGLTSL 229


>gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens]
          Length = 231

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 118/202 (58%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 20  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 79

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + ++QVC TTPCMLR  + ++E  + K+
Sbjct: 80  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYYIQVCTTTPCMLRNSDSILEAIQKKL 138

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 139 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 196

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 197 KPGPRSGRFSCEPAGGLTSLTE 218


>gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
 gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas
           reinhardtii]
 gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 122/208 (58%), Gaps = 15/208 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLL-MRAQEQEGWVSRA 59
            ++ +   E    +SF FSE +   VN++I+RYPP+  QSA+IP+L +  QE  GW+S A
Sbjct: 48  FNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLSLA 107

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +LDMA IRV E+ATFYT F  + +G + HVQ+CGTTPC L+G +K+ E     
Sbjct: 108 AMNRVAKLLDMAPIRVYEVATFYTMFNRTKIG-KYHVQICGTTPCRLQGSQKIEEAITKH 166

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEII 169
           +         DG  +  E+EC GACVNAPMV I   T          YEDLTP+ +  I+
Sbjct: 167 LGIGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNIL 226

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGL 197
           D     +G   +PG Q  R+ + PAG +
Sbjct: 227 DTIK--KGGKPKPGSQY-RLKAEPAGAV 251


>gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 5/187 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F F   +     E+I+RYPP   ++AVIPLL   Q Q +GW S + +  VA +L+M  +R
Sbjct: 46  FEFDAANMKRAQEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSISVMNYVAKLLEMPAMR 105

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTL 133
           V E+ATFYT F   P+G +  +Q+C TTPCML G   ++      +   KP     DG  
Sbjct: 106 VYEVATFYTMFNREPIG-QNFIQLCTTTPCMLCGSTNILNTISEHLGGIKPGQTTKDGKF 164

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVECQGAC NAPM+++  D YEDLTPE  ++I+DAF+  +G+  +PGPQ  R +S  
Sbjct: 165 TLVEVECQGACSNAPMMVVNDDYYEDLTPESTKKILDAFA--RGEKPKPGPQSSRHTSEN 222

Query: 194 AGGLTSL 200
           + GLT+L
Sbjct: 223 SAGLTNL 229


>gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii]
          Length = 201

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ E+   +  +++ YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 8   LFVHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPISA 67

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 68  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 126

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I    YEDLTP+ +EEIID    G+    
Sbjct: 127 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDELKAGK--IP 184

Query: 181 RPGPQIDRISSAPAGGL 197
           +PGP+  R S  PAGGL
Sbjct: 185 KPGPRSGRFSCEPAGGL 201


>gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5]
 gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5]
          Length = 167

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKQVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT E++E+IID  
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMEKIIDKL 164


>gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
 gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
          Length = 223

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS + +AE++ QP+SF+++ +S   +  ++++YP  R  SAV+PLL  AQ Q + W+  A
Sbjct: 1   MSSKPIAEDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A  LDMA IRVLE+ATFYT + L+PVG +  +Q C TTPC LRG ++++   ++K
Sbjct: 61  AIDAIAARLDMARIRVLEVATFYTMYNLAPVG-KWFLQACTTTPCWLRGSDQMMRCIKDK 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +      R +DG  S  EVEC GACVNAP++ +  D YED+  E    +IDA   G+   
Sbjct: 120 LGLDNHGRTADGQFSLLEVECLGACVNAPILQVNDDFYEDMDYETTATLIDALKRGEPPV 179

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
           +  G    R +S    G TSL
Sbjct: 180 V--GSMKGRQTSQSIAGPTSL 198


>gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTS L+   K  G K + D
Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247


>gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTS L+   K  G K + D
Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247


>gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 249

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F F+ E+    +E+I+RYPP   ++A +P+L   Q Q +GW S + +  VA +LDM  +R
Sbjct: 49  FEFTPENLKRAHEIIARYPPQYKKAAALPILDLGQRQNKGWTSISVMNAVAKLLDMPKMR 108

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT +   PV     VQ+C TTPC L GC   K++E   + +   P     DG 
Sbjct: 109 VYEVATFYTMYNREPVAPN-FVQLCTTTPCQLGGCGSTKILETIESHLGVHPGQTTKDGK 167

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            ++ EVEC GAC NAPM+ IG D YEDLTPE   +I+DA +  +G+  +PGPQ  R +S 
Sbjct: 168 FTFVEVECLGACSNAPMMQIGDDYYEDLTPETTVKILDALA--RGEKPKPGPQSGRQTSE 225

Query: 193 PAGGLTSL 200
            + GLT+L
Sbjct: 226 NSAGLTTL 233


>gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP 210

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTS L+   K  G K + D
Sbjct: 211 --KPGPQNGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 247


>gi|227297|prf||1701345A NADH dehydrogenase FeS protein
          Length = 249

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QV  TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVGTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGGLTSL +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE 236


>gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 164

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 3   TNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEMPY 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L PVG + H+QVC TTPC LRG + ++++C  K+  K      D  
Sbjct: 63  MRAYEVATFYTMFNLKPVG-KYHIQVCTTTPCWLRGSDHIMKICEKKLGVKLKETTEDQK 121

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP++ I  D YEDLT E++E IID  
Sbjct: 122 FTLSEIECLGACVNAPVIQINDDYYEDLTQEKMETIIDKL 161


>gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238663550|emb|CAZ34426.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Schistosoma
           mansoni]
          Length = 248

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/220 (40%), Positives = 123/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F FS E+   ++ +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   + 
Sbjct: 92  MNKVAEILNVPQMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEVILNALKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    I++    G+  
Sbjct: 151 NLGIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEEIKAGKKP 210

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTS L+   K  G K + D
Sbjct: 211 --KPGPQSGQGGRFASEPKGGLTS-LNTEPKSPGFKVRSD 247


>gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 268

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 115/195 (58%), Gaps = 9/195 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSE++    +E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 53  FKFSEQNLKLADEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARMLEMPPMRV 112

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQ+C TTPC L GC    +++     +   P H   DG  
Sbjct: 113 YEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSTAIVKAITEHLGITPGHTTEDGLF 171

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTI-RPGPQID 187
           ++ EVEC GACVNAPMV I  D YEDLTPE ++ I+ A      +TG G  I  PGP   
Sbjct: 172 TFTEVECLGACVNAPMVQINDDYYEDLTPESIKTILTALKDSATATGAGAKIPAPGPLSG 231

Query: 188 RISSAPAGGLTSLLD 202
           R +   + GLT+L D
Sbjct: 232 RDTCENSAGLTNLTD 246


>gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-12]
          Length = 213

 Score =  157 bits (397), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 121/208 (58%), Gaps = 12/208 (5%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
           QP SF+F +ES   +  V+ +YP  R  SAV+PLL  AQ Q G      W+   A++ +A
Sbjct: 10  QPESFAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK--IHQK 123
           + L+MA IRV E+A+FYT F   P+G R H+QVC TTPC LRG + + E CR    IH  
Sbjct: 70  HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
               ++DG  +  EVEC GAC NAP++ +  D YED+   R E +I     G+      G
Sbjct: 129 G-ETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRKP--EAG 185

Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKK 211
           P I+R+ SAP GG  +LL+ ++    +K
Sbjct: 186 PTINRMCSAPEGGRKTLLETSASSPDQK 213


>gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 222

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 118/202 (58%), Gaps = 12/202 (5%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRA 59
           AE   +  +F+++ E+A     VI+RYP  R +SAV+PLL  AQ Q       +GW+   
Sbjct: 11  AETRARWGAFAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVP 70

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            IE VA  LDM +IR  E+ATFYT + L+PVG R HVQVCGTTPC+LRG + +   C+N+
Sbjct: 71  VIEYVAAQLDMPFIRAYEVATFYTMYNLAPVG-RYHVQVCGTTPCLLRGSDDVTAACKNR 129

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG-QGD 178
              K      DG  +  EVEC G C NAPMV I  D YEDL  + +  I+D  + G Q  
Sbjct: 130 GMVKG-KTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGKQPK 188

Query: 179 TIRPGPQIDRISSAPAGGLTSL 200
           T    P+  R +S P GG T+L
Sbjct: 189 TGTQNPR--RHTSEPEGGPTTL 208


>gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
 gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
          Length = 167

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L  VG + H+ VC TTPC LRG + ++++C+ K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKRVG-KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            +  E+EC GACVNAP++ I  D YEDLTPE++E++ID
Sbjct: 125 FTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLID 162


>gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
 gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
          Length = 213

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 117/207 (56%), Gaps = 10/207 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
           QP SF F +ES   +  V+ +YP  R  SAV+PLL  AQ Q G      W+   A++ +A
Sbjct: 10  QPDSFVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           + L+MA IRV E+A+FYT F   P+G R H+QVC TTPC LRG + + E CR        
Sbjct: 70  HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128

Query: 126 HRNSD-GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              SD G  +  EVEC GAC NAP++ +  D YED+   R E +I     G+      GP
Sbjct: 129 GETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRHP--EAGP 186

Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211
            I+R+ SAP GG  +LL+ ++    +K
Sbjct: 187 AINRMCSAPEGGRKTLLETSASSSDQK 213


>gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger]
          Length = 269

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 125/212 (58%), Gaps = 11/212 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+E++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQYKKAAVMPVLDVGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----S 173
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A      +
Sbjct: 158 HLGITPGHTTEDGLFTFVEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217

Query: 174 TGQGDTIR---PGPQIDRISSAPAGGLTSLLD 202
           T  G T++   PGP   R +   + GLT+L++
Sbjct: 218 TEAGQTVKVPAPGPLSGRDTCENSAGLTNLIE 249


>gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni]
 gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni]
          Length = 242

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ILD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILDLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV +  D YEDLT + +++I+   S  + D I
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDIL---SDLKADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S PAG  TSL
Sbjct: 207 SPPGPRNGRFASEPAGNATSL 227


>gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818]
          Length = 251

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 4/203 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R +EE    + F F++ +   V  +I ++PP+   +A IP+L  AQ Q  GW+   
Sbjct: 37  LFVHRDSEENNDETPFKFTDSNMKRVEAIIGQFPPNHRSAACIPVLDLAQRQNNGWLPLN 96

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA IL M  +RV E+ATFYT F   PVG + H+QVC TTPCM+RG  K+ +  + K
Sbjct: 97  AMNEVAKILRMPKMRVYEVATFYTMFNREPVG-KYHIQVCTTTPCMVRGAYKVFDHLKAK 155

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +    + D   +  EVEC GAC NAPM+ I  + YEDLT E ++ I+D    G+  T
Sbjct: 156 LGLENGETSDDKLFTLLEVECLGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGK--T 213

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PGPQ  R ++ P  G T+LL+
Sbjct: 214 PKPGPQSGRNAAEPLSGQTTLLE 236


>gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 260

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 7/191 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FKFSKENEKIIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQVC TTPC L GC  +K+++   N +   P H   DG  
Sbjct: 114 YEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINNHLGITPGHTTDDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----STGQGDTIRPGPQIDRI 189
           ++ EVEC GACVNAPMV I  D YEDLTPE + +++ A     +        PGP   R 
Sbjct: 173 TYIEVECLGACVNAPMVQINDDYYEDLTPESIVQLLTALKESATNPAAKVPAPGPLSGRE 232

Query: 190 SSAPAGGLTSL 200
           +   + GLT+L
Sbjct: 233 TCENSAGLTNL 243


>gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Ciona intestinalis]
          Length = 242

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 3/187 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F++++   +  + + YP     +AV+P+L  AQ Q GW+  +A+  VA +LD+  +
Sbjct: 44  TPFDFTKKNYERIEAIKANYPEGHKVAAVMPILDLAQRQHGWLPISAMNKVAELLDVPPM 103

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFYT +  +P+G + H+Q+C TTPCML G + ++EV + K+  K      DG  
Sbjct: 104 RVYEVATFYTMYNRNPIG-KYHLQLCTTTPCMLCGSDGILEVIQKKLGIKVGETTKDGLF 162

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  E EC GACVNAPM+ I    YEDL P  +EEI+D  + G+    +PGP+ +R +  P
Sbjct: 163 TLMEAECLGACVNAPMIQINDMYYEDLKPSDMEEILDDLTNGR--EPKPGPRSERFACEP 220

Query: 194 AGGLTSL 200
            GGLTSL
Sbjct: 221 LGGLTSL 227


>gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
 gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
          Length = 224

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 19/210 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            +F++++E+    NE+++RYP  R QS  IP L  AQ Q       +GW+    IE VA 
Sbjct: 18  GNFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPVPVIEFVAR 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            L +AY+R+ E+ATFYT F L+PVG R HVQVCGTTPCMLRG + ++  C+NK   K   
Sbjct: 78  QLGVAYMRIYEVATFYTMFNLAPVG-RYHVQVCGTTPCMLRGSDDVLAACKNKGLIKG-K 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG---DTIRPG 183
              DG  +  EVEC G C +APMV I  D +EDL  +R   I++A + G+     T  PG
Sbjct: 136 TTPDGLFTLTEVECMGNCASAPMVQINDDNFEDLDYDRTVTILEALARGESPKTGTQEPG 195

Query: 184 PQIDRISSAPAGG---LTSLLDNNSKKRGK 210
               R +  P GG   LT+++ +N   RG+
Sbjct: 196 ----RHTVEPLGGPTTLTAMVGDNHDYRGE 221


>gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
 gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
          Length = 222

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 121/209 (57%), Gaps = 19/209 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSRAAIEVVAN 66
            SF +S+E+    +  I++YP  R +SAV+ LL   Q Q       +GW+    IE +A+
Sbjct: 18  GSFEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVGEETDTQGWLPLPVIEYIAD 77

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            LDM  IRVLE+ATFY  + + PVG + HVQVCGTTPCMLRG + +I  C+ +       
Sbjct: 78  YLDMPVIRVLEVATFYFMYNMKPVG-KYHVQVCGTTPCMLRGSDDIISACKKR-GMGFGK 135

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---GDTIRPG 183
            + DG  +  EVEC G C  APMV I  D YEDLT ERL+ ++DA + G+     T  PG
Sbjct: 136 VSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVLDALAAGEQPKTGTQEPG 195

Query: 184 PQIDRISSAPAGGLTSL---LDNNSKKRG 209
               R +S P+GG T+L   +D N   RG
Sbjct: 196 ----RHTSEPSGGPTTLKEMVDANHDYRG 220


>gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae]
 gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 270

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 11/195 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+F+E++   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQ+C TTPC L GC   K++E  +  +   P H   DG  
Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITPGHTTEDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185
           +  EVEC GACVNAPMV I  D YEDLTPE ++ ++ A      +T  G T++   PGP 
Sbjct: 173 TLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATATDAGKTVQIPAPGPM 232

Query: 186 IDRISSAPAGGLTSL 200
             R +   + GLT+L
Sbjct: 233 SGRNTCENSAGLTNL 247


>gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b
           [Rattus norvegicus]
          Length = 227

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 3/179 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           + +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+ATFYT
Sbjct: 39  VRIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 98

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC GA
Sbjct: 99  MYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGA 157

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
           CVNAPMV I  D YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL +
Sbjct: 158 CVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKPGPRSGRFCCEPAGGLTSLTE 214


>gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel]
 gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel]
          Length = 167

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           +SF F +++     +++ +YPP   +SA++PLL  AQ Q G W+S  AIE VAN+L +AY
Sbjct: 6   TSFIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L P+G + H++VC TTPC LRG   +I+ C  K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKPIG-KHHIKVCTTTPCWLRGSSDIIKTCEQKLGIKEQEVTKDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S  E+EC GACVNAP+V I  D YEDLT E++E I+D  
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTQEKMENILDKL 164


>gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
 gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
          Length = 249

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 122/211 (57%), Gaps = 15/211 (7%)

Query: 2   SVRRLAEEEF--------QPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
           S  RL+E  F         PS  F F+ E+    +E+ISRYPP   ++A +P+L   Q Q
Sbjct: 26  STSRLSESLFVHRDTDYNNPSIPFEFTPENLKRAHEIISRYPPQYKKAAALPILDLGQRQ 85

Query: 53  -EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC-- 109
            +GW S + +  VA +LDM  +RV E+ATFYT +   PV     VQ+C TTPC L GC  
Sbjct: 86  NKGWTSISVMNAVAKLLDMPRMRVYEVATFYTMYNREPVAPN-FVQLCTTTPCQLGGCGS 144

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            K++E   + +   P     DG  ++ EVEC GAC NAPM+ IG + YEDLTPE   +I+
Sbjct: 145 TKILETIESHLGIHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDEYYEDLTPETTIKIL 204

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           D  +  +G+  +PGPQ  R +S  + GLT+L
Sbjct: 205 DTLA--RGEKPKPGPQSGRQTSENSAGLTTL 233


>gi|17561328|ref|NP_506376.1| hypothetical protein F53F4.10 [Caenorhabditis elegans]
 gi|6647669|sp|Q20719|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial; Flags: Precursor
 gi|3877525|emb|CAB01203.1| C. elegans protein F53F4.10, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 239

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  ++  YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVAKILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP+ + EI+D    G+    
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAA 205

Query: 181 RPGPQIDRISSAPAGGLTSL 200
             GP+  R+++ P G LTSL
Sbjct: 206 --GPRSGRLAAEPFGELTSL 223


>gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 215

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 7/214 (3%)

Query: 1   MSVR-RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSR 58
           MS+  R+AE+  QP+SF+F+ E+   +  +I++YP  R  SAV+PLL  AQ Q E W+  
Sbjct: 1   MSIEARIAED--QPNSFAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPM 58

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
            AIE++A+ LDMA IRVLE+ATFYT F L PVG +  +Q C TTPC LRG ++++   ++
Sbjct: 59  KAIELIADKLDMAKIRVLEVATFYTMFNLKPVG-KYFLQACTTTPCWLRGSDEMMRCIKD 117

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +        +  G  S  EVEC GACVNAP++ +  D YEDL  +    ++D+    +  
Sbjct: 118 RYGITSGQTSDCGRFSLLEVECLGACVNAPILQVNDDFYEDLNYQSTGALLDSLE--KDA 175

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +  G  + R  S  +GG TSL     KK  K K
Sbjct: 176 PLAVGSVLGRSGSEASGGATSLNAIKPKKTAKAK 209


>gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1]
          Length = 262

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 4/218 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R  E+     +F F+ E+   V  + +++PP    +A IP+L  AQ Q G W+  +
Sbjct: 48  LFVHRDTEKNNSSIAFEFTPENMKKVEAITAQFPPGHRAAACIPVLDLAQRQYGGWLPIS 107

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA +L M  IRV E+A+FYT F   PVG + HVQVC TTPCM+RG   + E  + K
Sbjct: 108 AMDEVARVLQMPKIRVYEVASFYTMFNRDPVG-KYHVQVCTTTPCMVRGAYNIFEHLQKK 166

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +       + DG  +  EVEC GAC NAPM+ I  + YEDL    ++ II+A    +G+T
Sbjct: 167 LGLHNGETSEDGMFTLLEVECLGACSNAPMIQINDEYYEDLELADVDRIIEALR--KGET 224

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +PGPQ  R ++ P GGLT+L         K + D K+
Sbjct: 225 PKPGPQNGRKAAEPLGGLTALTSEPVDGAHKFRTDGKL 262


>gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington]
 gi|81390153|sp|Q68X20|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str.
           Wilmington]
          Length = 170

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           +F+F +++      +I +YPP+  +SA++PLL  AQ Q G W+  +AIE VAN+L+M Y+
Sbjct: 9   TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYM 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R  E+ATFY+ F LSPVG + H+QVC TTPC LRG + ++++C  K+  K      D   
Sbjct: 69  RAYEVATFYSMFNLSPVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQKF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  E+EC GACVNAP+V I  D YEDL   ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166


>gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus]
          Length = 192

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+ATFYT +
Sbjct: 6   IEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMY 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC GACV
Sbjct: 66  NRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGACV 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
           NAPMV I  + YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL +
Sbjct: 125 NAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE 179


>gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E]
 gi|6647681|sp|Q9ZDH5|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii]
 gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii Rp22]
          Length = 177

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           +F+F +++      +I +YPP   +SA++PLL  AQ Q G W+  +AIE VAN+L+M Y+
Sbjct: 9   TFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYM 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R  E+ATFYT F L+P+G + H+QVC TTPC LRG + ++++C  K+  K      D   
Sbjct: 69  RAYEVATFYTMFNLNPIG-KYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQKF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  E+EC GACVNAP+V I  D YEDL   ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166


>gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus]
          Length = 238

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 109/179 (60%), Gaps = 3/179 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           + +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+ATFYT
Sbjct: 50  VRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT 109

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC GA
Sbjct: 110 MYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGA 168

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
           CVNAPMV I  + YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL +
Sbjct: 169 CVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE 225


>gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
 gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
          Length = 167

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+         D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT E++ +IID F
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGKIIDKF 164


>gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens]
          Length = 220

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 9   LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 68

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  IRV E+ATFYT +   PVG + H+Q C TTPCML   + ++E  + K+
Sbjct: 69  MNKVAEVLQVPPIRVYEVATFYTMYNRKPVG-KYHIQACTTTPCMLPNSDSILEAIQKKL 127

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 128 GIKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 185

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGP+  R S  PAGG T L +
Sbjct: 186 KPGPRSGRFSCEPAGGPTPLTE 207


>gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina
           98AG31]
          Length = 257

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F F+ E        I  +PP   ++AVIP+L  AQ Q +GW S + +  VA +LDM  +R
Sbjct: 57  FEFTPEYMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSISVMNYVAKLLDMTPMR 116

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK--LIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT F   PVG    VQVC TTPCML GC    +++  ++ +  +     +D  
Sbjct: 117 VYEVATFYTMFNREPVGEH-FVQVCTTTPCMLGGCGSSIIVDTIKDHLGIQLGQTTADKK 175

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPMV I  D YEDLTP+ +++I+D    G+  +  PGPQ  R SS 
Sbjct: 176 FTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGRKPS--PGPQSSRKSSE 233

Query: 193 PAGGLTSL 200
           P GGLTSL
Sbjct: 234 PVGGLTSL 241


>gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
          Length = 227

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRA 59
           +  E +QP+ FSF  +S   +  ++++YPP+R  SAV+PLL  AQ Q G      W+ RA
Sbjct: 10  VGREPWQPAEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRA 69

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A  L MA IRV E+ATFY  +   PVG R H+Q+C TTPC LRG ++++  CR+ 
Sbjct: 70  AMDEIARRLGMAPIRVYEVATFYFMYNTRPVG-RHHLQLCTTTPCWLRGSDEVVAACRSA 128

Query: 120 IHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
              +     S DG  +  EVEC GACVNAP++ +  D YED+   R   +++A   G+  
Sbjct: 129 TGIQGWGETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGERP 188

Query: 179 TIRPGPQIDRISSAPAGGLTSLLD 202
           T  PG    R +SAP GG T+L D
Sbjct: 189 T--PGSMSGRQNSAPEGGPTTLRD 210


>gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis]
 gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis]
          Length = 242

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFSAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++     + D I
Sbjct: 150 GIGVGETTKDKKFTISEVECLGACVNAPMVSINDDYYEDLTGKDMQEILNDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSLLDN 203
             PGP+  R +S P G  TSL+++
Sbjct: 207 SPPGPRNGRFASEPKGEPTSLIED 230


>gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
 gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
          Length = 167

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  +      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT E++ EIID  
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKL 164


>gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500]
          Length = 342

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 126/212 (59%), Gaps = 7/212 (3%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVAN 66
           EE    + F F+EE+ + V +++S+YPP+  QSA+IPLL  AQ Q G W+S  A++ VA 
Sbjct: 41  EENNDHTPFDFNEENMVKVEKILSKYPPAYRQSAMIPLLDLAQRQNGGWISLRAMDKVAE 100

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           I+ +  +   E+A+FYT F  + +G +  VQVC TTPCMLRG   +++ C++ +      
Sbjct: 101 IIGVPPMEAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTAILDACKHHLKIGVGE 159

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
              D   +  EVEC GACVNAPM+ I  D YEDLTP+ ++ +++    G+   I  GPQ 
Sbjct: 160 TTKDDVFTLAEVECLGACVNAPMICINDDFYEDLTPDSMKNLLNQIQNGKETKI--GPQT 217

Query: 187 DRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
            R ++    G T+LL+  S   G   +DD +S
Sbjct: 218 HRKAAEGPQGKTTLLEQPS---GPFCRDDLMS 246


>gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2]
 gi|75536607|sp|Q4UM09|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2]
          Length = 167

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 106/162 (65%), Gaps = 2/162 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 3   TNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFY+ F L  VG + H+QVC TTPC L G + ++++C  K+  K      D  
Sbjct: 63  MRAYEVATFYSMFNLKRVG-KYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQK 121

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +  E+EC GACVNAP+V I  D YEDLT E++E++ID +S 
Sbjct: 122 FTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYSN 163


>gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi]
 gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi]
          Length = 242

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS E+   V+ ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVADILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILEQCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I+   S  + D I
Sbjct: 150 AIGVGETTKDNKFTISEVECLGACVNAPMVSINDDYYEDLTAKDMQDIL---SDLKADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S P G  TSL
Sbjct: 207 SPPGPRNGRFASEPKGNPTSL 227


>gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae]
 gi|187030243|emb|CAP30450.1| hypothetical protein CBG_11518 [Caenorhabditis briggsae AF16]
          Length = 239

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  + + YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTPENEDRIKAICAIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP+ + EI+D    G+    
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVHEILDDLKAGRKPAA 205

Query: 181 RPGPQIDRISSAPAGGLTSL 200
             GP+  R+++ P G LTSL
Sbjct: 206 --GPRSGRLAAEPFGELTSL 223


>gi|254568298|ref|XP_002491259.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Pichia pastoris GS115]
 gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Pichia pastoris]
 gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Pichia pastoris CBS
           7435]
          Length = 241

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R   ++     F F++E+     E+I++YPP   + AV+PLL   Q Q G+ S + 
Sbjct: 30  ISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  LDM  +RV E+ATFYT +   P+G + +VQVC TTPC L G + +++     +
Sbjct: 90  MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNVQVCTTTPCQLCGSDGIMKAITEHL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P     D   + +EVEC GACVNAPM+ +  D YEDLTPER  EI+  F +  GD  
Sbjct: 149 QIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQS--GDIP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP  DR S  P  G   L +          +DD
Sbjct: 207 KPGPA-DRHSCEPHSGPKVLTNETPYHVKDFIRDD 240


>gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7]
 gi|20139044|sp|Q92ID9|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7]
          Length = 167

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT +++ +IID  
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKL 164


>gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
 gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
          Length = 246

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F++E+   V  +I+ YP     +AVIP+L  AQ Q GW+  +A
Sbjct: 33  LFVHRDSPENNPDTPFEFTQENLNRVKLIINNYPVGHEAAAVIPVLDLAQRQHGWLPLSA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL M  +RV E+ATFYT F   PVG + HVQ+C TTPC L G   + ++E  + 
Sbjct: 93  MNKVAEILKMPRMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCNLGGVGSDVILEAIKK 151

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K+         D   +  EVEC GACVNAPMV I  + YEDLT   +EEI+D    G+  
Sbjct: 152 KLGINVGETTKDNMFTLIEVECLGACVNAPMVQINDNYYEDLTAADMEEILDDLMAGK-- 209

Query: 179 TIRPGPQIDRISSAPAGGLTSL 200
           T + GP+  R +S P  GLTSL
Sbjct: 210 TPKAGPRNGRFASEPLSGLTSL 231


>gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
           [Pichia angusta DL-1]
          Length = 234

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 1/176 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R  +   Q   F F+ E+     E++ RYPP   +SAV+PLL   Q Q G+ S A 
Sbjct: 24  VAVHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAV 83

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+A+FYT +   PVG + H+Q+C TTPC L   + +IE     +
Sbjct: 84  MNHVAELLDMPAMRVYEVASFYTMYHREPVG-KYHIQICTTTPCQLCNSDSVIEAIMKHL 142

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           + +P     DG  S EEVEC GACVNAPM+ I  D YEDLT E   EI++A  +G+
Sbjct: 143 NLQPNQTTPDGLFSLEEVECLGACVNAPMMQINDDYYEDLTAESAVEILEALKSGK 198


>gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa]
 gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str.
           Iowa]
          Length = 167

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC L G + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT E++ EIID  
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKL 164


>gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 260

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 7/208 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FKFSAENEKVIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQVC TTPC L GC  +K+++     +   P H   DG  
Sbjct: 114 YEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINKHLGITPGHTTEDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI----RPGPQIDRI 189
           ++ EVEC GACVNAPMV I  D YEDLTPE + +++ A      +       PGP   R 
Sbjct: 173 TYIEVECLGACVNAPMVQINDDYYEDLTPESITQLLTALKESATNPAVKVPAPGPLSGRD 232

Query: 190 SSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +   + GLT+L +         +KD ++
Sbjct: 233 TCENSAGLTNLKEVTWNPEQMMRKDGEL 260


>gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
 gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R ++ + Q  +F F+ E+    +E+I++YPP   + AV+PLL   Q Q G+ S + 
Sbjct: 27  ISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++  ++ +
Sbjct: 87  MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDGVMKAIQDHL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ +  D YEDLTPE   +I+  F  G+   I
Sbjct: 146 KVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPEATVDILKQFQAGKEPKI 205

Query: 181 RPGPQIDRISSAPAGGLTSLL 201
             GP   R S  P  G   LL
Sbjct: 206 --GPISGRESCEPHSGAKVLL 224


>gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5]
 gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5]
          Length = 167

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + +++VC  K+  +      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +  E+EC GACVNAP+V I  D YEDLT E++  IID  
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGGIIDKL 164


>gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica]
 gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica]
          Length = 243

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 4/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  E       F FS E+     EVI++YPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 30  VSVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISV 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT +  +P+G R H+Q+C TTPC L G + ++E  +N +
Sbjct: 90  MNYVAKLLEMPPMRVYEVATFYTMYNRTPMG-RYHLQICTTTPCQLCGSDGIMEAVQNTL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + KP     D   +  EVEC GACVNAPM+ I  D YEDLTPE   ++++    G+  T 
Sbjct: 149 NIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPT- 207

Query: 181 RPGPQID-RISSAPAGGLTSLL 201
            PGP+   R    PA G   LL
Sbjct: 208 -PGPENHVRRDCEPASGQKVLL 228


>gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 268

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 11/195 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 54  FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQ+C TTPC L GC   K++E  +  +     H   DG  
Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITAGHTTEDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185
           ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A      +   G  ++   PGP 
Sbjct: 173 TFIEVECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESATAAESGKEVKVPAPGPL 232

Query: 186 IDRISSAPAGGLTSL 200
             R S   + GLT+L
Sbjct: 233 SGRHSCENSAGLTNL 247


>gi|324507243|gb|ADY43075.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Ascaris suum]
          Length = 280

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 3/175 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++ YP     +A+IP L  AQ Q GW+  +A+  VA IL++  +RV E+ATFYT F
Sbjct: 94  IKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVATFYTMF 153

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG +  +QVC TTPCMLRG E L E    K+  K      DG  +  EVEC GAC 
Sbjct: 154 NRQPVG-KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLFTLMEVECLGACA 212

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           NAPM+ +  D YEDLTP  + +I+     G+    +PGP+  R+++ P GG TSL
Sbjct: 213 NAPMIQVNDDFYEDLTPSDMNDILSELKAGKRP--KPGPRSGRLAAEPHGGFTSL 265


>gi|289619209|emb|CBI54477.1| unnamed protein product [Sordaria macrospora]
          Length = 271

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 112/190 (58%), Gaps = 6/190 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS E+   + E+I RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 69  FKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRV 128

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG + HVQ C TTPC L GC  + +++  +  +  K      DG  
Sbjct: 129 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLF 187

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGDTIRPGPQIDRIS 190
           ++ EVEC GAC NAPMV I  D +EDLTPE + +++ A     T      +PGPQ  R +
Sbjct: 188 TFLEVECLGACANAPMVQINDDYFEDLTPETITQVLVALKESVTDASKAPKPGPQSGRQT 247

Query: 191 SAPAGGLTSL 200
              A GLTSL
Sbjct: 248 CENAAGLTSL 257


>gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Acromyrmex echinatior]
          Length = 243

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E++     F F+E +   ++ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEQDNPNIPFEFNEANKKRIDALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ILD+  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + ++       
Sbjct: 91  MHKVAEILDVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDSIVNAVTKAT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+AF   +G+  
Sbjct: 150 NCELGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATTIINAFK--KGERP 207

Query: 181 RPGPQ-IDRISSAPAGGLTSL 200
            PGPQ   R ++ PAGGLTSL
Sbjct: 208 PPGPQNCSRFAADPAGGLTSL 228


>gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 268

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 11/197 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQ+C TTPC L GC   K++E     +     H   DG  
Sbjct: 114 YEVATFYTMYNRDPVG-KYFVQLCTTTPCQLGGCGSTKILEAIEEHLGITSGHTTEDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185
           +  EVEC GACVNAPMV I  D YEDLTPE ++ ++ A      +   G +++   PGP 
Sbjct: 173 TLLEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATAAESGKSVKVPAPGPL 232

Query: 186 IDRISSAPAGGLTSLLD 202
             R +   + GLT+L D
Sbjct: 233 SGRQTCENSAGLTNLQD 249


>gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|730212|sp|P40915|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial; Flags: Precursor
 gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa]
 gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24)
           [Neurospora crassa]
 gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD
          Length = 263

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS ++   + E+I RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 61  FKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNEVARLLEMPPMRV 120

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG + HVQ C TTPC L GC  + +++  +  +  K      DG  
Sbjct: 121 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTPDGLF 179

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRIS 190
           ++ EVEC GAC NAPMV I  D +EDLTPE +++++ A      D  +   PGPQ  R +
Sbjct: 180 TFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTDVSKAPQPGPQSGRQT 239

Query: 191 SAPAGGLTSL 200
              A GLTSL
Sbjct: 240 CENAAGLTSL 249


>gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii]
          Length = 178

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 3/171 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F+ E+   V ++I  YP     +AVIP+L  AQ Q GW+  +A+  VA IL+M+ I
Sbjct: 11  TPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHEVAGILEMSKI 70

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFYT F   PVG + H+Q+C TTPCMLR  + +++V +NK+         D   
Sbjct: 71  RVYEVATFYTMFNREPVG-KYHIQICTTTPCMLRDSDGILDVIKNKLGIGVGETTKDNMF 129

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           +  EVEC GACVNAPMV I  + YEDLT + +EEIID     +  T + GP
Sbjct: 130 TLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR--TPKAGP 178


>gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba]
 gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba]
          Length = 242

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     + D I
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S P G  TSL
Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227


>gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta]
 gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta]
          Length = 242

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     + D I
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S P G  TSL
Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227


>gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 268

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 114/195 (58%), Gaps = 11/195 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 54  FKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARILEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +   PVG +  VQ+C TTPC L GC   K++E  +  +     H   DG  
Sbjct: 114 YEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQEHLGITAGHTTEDGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STGQGDTIR---PGPQ 185
           ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A      +   G  ++   PGP 
Sbjct: 173 TFIEVECLGACVNAPMVQINDDYYEDLTPESIKTLLTALKESATAAESGKEVKVPAPGPL 232

Query: 186 IDRISSAPAGGLTSL 200
             R +   + GLT+L
Sbjct: 233 SGRHTCENSAGLTNL 247


>gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia
           pulex]
          Length = 243

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F+F++E+    N +I+ YP    ++AVIPLL  AQ Q G W+  +A+  VA++L M  +R
Sbjct: 46  FAFTKENVERANAIINIYPDGHKRAAVIPLLDLAQRQAGGWLPISAMHAVADMLSMPKMR 105

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  +P+G +  VQVC TTPC L G EK++   + K++        +G  S
Sbjct: 106 VYEVATFYTMFNRNPIG-KHFVQVCTTTPCWLNGSEKIMNCLKKKLNLNNGETTPNGEFS 164

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
             EVEC GACVNAPM+ I  + +EDLT +  EEIID    G+    + GP+  R ++ P 
Sbjct: 165 LLEVECLGACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGR--EPKAGPRNGRFAAEPR 222

Query: 195 GGLTSL 200
            GLTSL
Sbjct: 223 DGLTSL 228


>gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogaster]
          Length = 269

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 58  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 117

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 118 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 176

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     + D I
Sbjct: 177 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDL---KADKI 233

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S P G  TSL
Sbjct: 234 SPPGPRNGRFASEPKGEPTSL 254


>gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster]
 gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia]
 gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans]
 gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster]
 gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia]
 gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans]
 gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct]
 gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct]
          Length = 242

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 5/201 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     + D I
Sbjct: 150 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSL 200
             PGP+  R +S P G  TSL
Sbjct: 207 SPPGPRNGRFASEPKGEPTSL 227


>gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 114/188 (60%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+EE    V+ VISRYP    ++AVIP+L   Q Q GW S A +  VA +L+M  +RV
Sbjct: 52  FEFNEEYRKKVDTVISRYPKQYRKAAVIPVLDLGQRQNGWTSLAVMNHVAEVLEMPRMRV 111

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQ-KPLHRNSDGT 132
            E+ATFYT +   PVG +  +  CGTTPC+L G   +++ +   + +   K      DG 
Sbjct: 112 YEVATFYTMYNREPVG-KHLISYCGTTPCLLGGVGGKRIWDTMTSHLGGIKNGETTKDGK 170

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPM+ I  D YEDLTPE   +I+DA +  +G+T +PGPQ  R +S 
Sbjct: 171 FTLVEVECLGACSNAPMIQINDDFYEDLTPESTIKILDALA--RGETPKPGPQSSRKTSE 228

Query: 193 PAGGLTSL 200
            A G+T+L
Sbjct: 229 NAQGMTTL 236


>gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
 gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
 gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
          Length = 203

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 112/200 (56%), Gaps = 17/200 (8%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ------EGWVSRAAIEVVANIL 68
           +FSF E S   +  +I++YP  R  SAV+PLL  AQ Q        WV R A++V+A  L
Sbjct: 8   AFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMDVIAARL 67

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            M  +RV E+ATFYT F   PVG + H+QVC TTPC LRG ++++  CR           
Sbjct: 68  SMPPMRVYEVATFYTMFHTKPVG-KFHLQVCTTTPCWLRGSDEVMSACRKAAE------- 119

Query: 129 SDG-TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
           +DG T S EEVEC G CVNAP+V +  D YEDL   R E +++      GD    G  I 
Sbjct: 120 ADGETFSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRA--GDVPPAGSTIG 177

Query: 188 RISSAPAGGLTSLLDNNSKK 207
           R +SAP GG T+L      K
Sbjct: 178 RQASAPEGGPTTLFGVGGTK 197


>gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
 gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
          Length = 271

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 27/202 (13%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           FSF  E      ++IS+YPP   ++AVIPLL  AQ+Q + WVS +A+  VA++L+M  +R
Sbjct: 55  FSFVGEYEQEAKDIISKYPPQYKKAAVIPLLHLAQKQNDNWVSISAMNHVADVLEMPPMR 114

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT F  SPVG +  VQVC TTPCML GC    ++E   N +  K  H   D  
Sbjct: 115 VYEVATFYTMFNRSPVG-KFFVQVCTTTPCMLGGCGSTAVLEAIENHLGIKAGHTTPDKM 173

Query: 133 LSWEEVECQGACVNAPMVMIGKDTY---------------------EDLTPERLEEIIDA 171
            +  EVEC GAC NAPM+ I  + Y                     EDLTPE + +++D 
Sbjct: 174 FTVIEVECLGACSNAPMIQINDEYYVRIFYNTHTHTHTSGSSNAEQEDLTPESVVKVLDG 233

Query: 172 FSTGQGDTIRPGPQIDRISSAP 193
            +  +G+ ++PGPQ  R++SAP
Sbjct: 234 LA--RGEHVKPGPQNGRLTSAP 253


>gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 262

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 114/193 (59%), Gaps = 9/193 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F++++   + EV+ RYPP   ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 57  FKFTKQNEAIITEVLKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRV 116

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG + HVQ C TTPC L GC  + +++  +  +  K     +DG  
Sbjct: 117 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGIKQGETTADGLF 175

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD------TIRPGPQID 187
           ++ EVEC GACVNAPM+ I  D YEDLTPE ++ ++ A      D        +PGP   
Sbjct: 176 TFIEVECLGACVNAPMIQINDDYYEDLTPETIKSLLTALKESVTDVGKAAKVPKPGPLSG 235

Query: 188 RISSAPAGGLTSL 200
           R +   + GLT+L
Sbjct: 236 RDTCENSAGLTNL 248


>gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae]
 gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTPENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV +  D YEDLT + ++ I+      +    
Sbjct: 150 SIGVGETTKDKKFTISEVECLGACVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSP- 208

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
            PGP+  R +S P G  TSL++
Sbjct: 209 -PGPRNGRFASEPKGEPTSLIE 229


>gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 281

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 117/208 (56%), Gaps = 15/208 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
            +V +   E     +F F+E +   VNE+I+RYPP+   SA+IP+L  AQ+Q G W+S A
Sbjct: 49  FNVHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLSLA 108

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +LDMA IRV E+ATFYT F  + +G + HV +CGTTPC L+G + + E     
Sbjct: 109 ALNRVAKVLDMAPIRVYEVATFYTMFNRTKIG-KYHVLICGTTPCRLQGAQGIEEAVTKH 167

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEII 169
           +         DG  +  E+EC GACVNAPMV I   T          YEDLTP  +  I+
Sbjct: 168 LGIHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDLTPSDIVGIL 227

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGL 197
           D     +G   +PG Q  R  + PAG +
Sbjct: 228 DTIK--KGGKPKPGSQ-HRSKAEPAGAV 252


>gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis]
 gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis]
          Length = 264

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + D   +  EVEC GACVNAPMV +  D YEDLT + +++I+      + D I
Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSLLD 202
             PGP+  R +S P G  TSL +
Sbjct: 207 SPPGPRNGRFASEPKGKPTSLTE 229


>gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
 gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
          Length = 264

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 5/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + D   +  EVEC GACVNAPMV +  D YEDLT + +++I+      + D I
Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDL---KADKI 206

Query: 181 R-PGPQIDRISSAPAGGLTSLLD 202
             PGP+  R +S P G  TSL +
Sbjct: 207 SPPGPRNGRFASEPKGKPTSLTE 229


>gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 8/201 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
           V R + E  +   F F+ E+      ++S YP    ++A +PLL  AQ Q G W+  +A+
Sbjct: 28  VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA+++ M  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ + 
Sbjct: 88  NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILQACKDNLG 146

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                   D   +  EVEC GACVNAPMV I  D YEDLT + + EI+D    G+    +
Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK----K 202

Query: 182 P--GPQIDRISSAPAGGLTSL 200
           P  GP+  R ++ P GG TSL
Sbjct: 203 PARGPRSSRYAAEPFGGPTSL 223


>gi|331251140|ref|XP_003338171.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309317161|gb|EFP93752.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 277

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 108/188 (57%), Gaps = 6/188 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
           F F+ E        I  +PP   ++AVIP+L  AQ Q  GW S + +  VA +L+M  +R
Sbjct: 77  FEFTPEYMEKAQRCIDNFPPQYKKAAVIPVLDLAQRQNNGWTSISVMNYVAKLLEMPPMR 136

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK--LIEVCRNKIHQKPLHRNSDGT 132
           V E+ATFYT F   PVG    VQ+C TTPCML GC    ++E  +N +  +      D  
Sbjct: 137 VYEVATFYTMFNREPVGEH-FVQICTTTPCMLGGCGSGVIVEAIKNHLGVELGQTTKDKK 195

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPMV I  D YEDLTPE + +++D  + G+    +PGPQ  R SS 
Sbjct: 196 FTVIEVECLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGRKP--KPGPQSSRQSSE 253

Query: 193 PAGGLTSL 200
           P G LTSL
Sbjct: 254 PVGKLTSL 261


>gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum]
          Length = 249

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+EE+   V+ +IS+YPP   QSA+IPLL  AQ Q G W+S  A++ VA I+ +A + 
Sbjct: 54  FDFTEENMKKVDTIISKYPPKYRQSAMIPLLDLAQRQNGGWISLKAMDKVAEIIGVAPMV 113

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
             E+A+FYT F  + +G +  VQVC TTPCMLRG   ++  C++ ++        D   +
Sbjct: 114 AYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTDILNACKHHLNINVGETTKDEKFT 172

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
             EVEC GACVNAPM+ I  D YEDLTPE ++ ++      + +  + GPQ  R ++   
Sbjct: 173 LVEVECLGACVNAPMICINDDYYEDLTPETMKNLLTQIE--KSEPTKVGPQNHRKAAEGP 230

Query: 195 GGLTSLLD 202
            G T+LL+
Sbjct: 231 QGKTTLLE 238


>gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes
           aegypti]
          Length = 180

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IPLL  AQ Q GW+  +A+  VA+IL +  +RV E+ATFYT F   P GT  HVQVC T
Sbjct: 1   MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTGTY-HVQVCTT 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           TPC LRG ++++  C+ K+         DG  +  EVEC GACVNAPM+ +  D YEDLT
Sbjct: 60  TPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLT 119

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
            +   EI+      QG   RPGP+  R +S P GGLTSL
Sbjct: 120 AKDTIEILSDLK--QGKVPRPGPRNGRFASEPTGGLTSL 156


>gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
 gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
          Length = 192

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 2/156 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           FSFS E+ +   ++I+ YP  +  SAV+ +L  AQ Q   W+S + IE VAN+L M YI+
Sbjct: 9   FSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYIK 68

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V EIA+FYT F L PVG + H+Q+CGTTPC LRG + ++  C+  +  +    + D   +
Sbjct: 69  VYEIASFYTMFNLQPVG-KYHIQICGTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLFT 127

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             E EC GAC NAP+V I  D YE+LT ++++EII+
Sbjct: 128 VSETECLGACRNAPVVQINHDYYENLTNDKIKEIIN 163


>gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980]
 gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 292

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 3/180 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   V E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LNVHRDTPENNASIPFKFTPQNEKLVEEILKRYPPQYKKAAVMPILDLGQRQHGFTSLSV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +  +PVG + H+QVC TTPC L GC  + +++    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNRNPVG-KYHLQVCTTTPCQLGGCGSDAIVKTIEQ 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  KP H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE    ++ A      D
Sbjct: 158 HLGIKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQASASD 217


>gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae]
          Length = 243

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS ++   V  +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 32  LFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPLLDLAQRQYGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG  ++++  +  +
Sbjct: 92  MHHVADILKLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSNEILDTIKKNL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +    +SD   +  EVEC GACVNAPMV I  D YEDLT +  EEI+     G+    
Sbjct: 151 GLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYEDLTVQDTEEILADLKAGRKP-- 208

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           +PGP+  R ++ P G  TSL
Sbjct: 209 KPGPRSGRYAAEPIGEPTSL 228


>gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 259

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 7/208 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
            +V R   E      F FSEE+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  FAVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAVMPLLDLGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG + HV+VC TTPC L GC  +K+++   +
Sbjct: 99  MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYHVKVCTTTPCQLGGCGSDKIMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAP+V I  D YEDLTPE +  ++DAF   + +
Sbjct: 158 HLGVSNGQTTPDKLYTVLEVECLGACVNAPVVQINDDYYEDLTPESVVSLLDAFKESETN 217

Query: 179 -TIR---PGPQIDRISSAPAGGLTSLLD 202
            +++   PGP  +R +   + GLT+L +
Sbjct: 218 KSVKIPPPGPLSERNTCENSAGLTNLTN 245


>gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum]
 gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium
           castaneum]
          Length = 243

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 3/185 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ E+    + +++ YP    ++A+IPLL  AQ Q GW+  +A+  VA IL++  +RV
Sbjct: 47  FDFTPENKKRADAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISAMHKVAEILNLPRMRV 106

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT F   P G + H+QVC TTPC LRG +++++  +  +  +    +SDG  + 
Sbjct: 107 YEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTIKCNLKLEVGETSSDGMFTL 165

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            EVEC GACVNAPM+ +  D YEDLT +  EEI++     +    +PGP+  R ++ P G
Sbjct: 166 SEVECLGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNKKP--KPGPRNGRFAAEPIG 223

Query: 196 GLTSL 200
             T L
Sbjct: 224 EPTCL 228


>gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis
           Pb03]
 gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 259

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L GC   K+++   +
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +        SD   +  EVEC GACVNAPMV I  D YEDLTPE +  ++ A    + D
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217

Query: 179 TI----RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           T      PGP   R S   + GLT+ L N S    + +KD ++
Sbjct: 218 TTVKVPAPGPLSGRKSCENSAGLTN-LTNPSWSPDRMRKDGEL 259


>gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Apis mellifera]
          Length = 243

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E +     F F+E +   +  ++  YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEVDNPSIPFEFNEANKKRIEALLKIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + ++E      
Sbjct: 91  MHKVAEILNIPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKVT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + K    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+AF   +G+  
Sbjct: 150 NCKVGEMSADKLFTVSEVECLGACANAPMFQVNDDYYEDLTPESAISIINAFK--KGERP 207

Query: 181 RPGPQID-RISSAPAGGLTSL 200
            PGPQ   R ++ PAGGLTSL
Sbjct: 208 PPGPQNSPRFAADPAGGLTSL 228


>gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus
           salmonis]
          Length = 240

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 8/201 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
           V R + E  +   F F+ ++      ++S YP    ++A +PLL  AQ Q G W+  +A+
Sbjct: 30  VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA+ +DM  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ + 
Sbjct: 90  NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                   D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++    G     +
Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKVGT----K 204

Query: 182 P--GPQIDRISSAPAGGLTSL 200
           P  GP+  R ++ P GG TSL
Sbjct: 205 PARGPRSSRYAAEPFGGPTSL 225


>gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+]
          Length = 260

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F++++   + E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 58  FKFTDQNEKIITEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARILEMPPMRV 117

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG + HVQ C TTPC L GC  + +++  +  +  K      DG  
Sbjct: 118 YEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKEHLGIKQGETTPDGLF 176

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRIS 190
           ++ EVEC GACVNAPMV I  + YEDLTPE  ++++ A      D     +PGP   R +
Sbjct: 177 TFIEVECLGACVNAPMVQINDEYYEDLTPETTKQLLTALKESLNDASKAPKPGPVSGRDT 236

Query: 191 SAPAGGLTSL 200
              + GLT+L
Sbjct: 237 CENSAGLTNL 246


>gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Harpegnathos saltator]
          Length = 216

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 111/188 (59%), Gaps = 8/188 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A+  VA ILD+  +RV
Sbjct: 19  FEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHKVAEILDLPRMRV 78

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT F   P+G + HVQ+C  TPC LR  + ++E      + +    ++D   + 
Sbjct: 79  YEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKATNCEIGATSADKLFTI 137

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP--GPQID-RISSA 192
            EVEC GAC NAPM  +  D YEDLTPE    II+AF  G+    RP  GPQ   R ++ 
Sbjct: 138 SEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFKKGE----RPPAGPQNSTRFAAD 193

Query: 193 PAGGLTSL 200
           PAGGLTSL
Sbjct: 194 PAGGLTSL 201


>gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767]
 gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii]
          Length = 238

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +S+ R  +E+ +  SF F+ E+    NE+I++YPP   ++AV+PLL   Q Q G+ S A 
Sbjct: 26  ISIHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAV 85

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G +++++   + +
Sbjct: 86  MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDEVMDAITSHL 144

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ-GDT 179
             KP     D   + +EVEC GACVNAPM+ +  D +EDLT E+    ID   T Q G  
Sbjct: 145 KIKPGQTTPDKLFTLQEVECLGACVNAPMLALNDDFHEDLTAEK---TIDLLKTLQAGKE 201

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
            + GP   R +  P  G   LL
Sbjct: 202 PKAGPVSGRDTCEPFSGAKVLL 223


>gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 8/201 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
           V R + E  +   F F+ E+      ++S YP    ++A +PLL  AQ Q G W+  +A+
Sbjct: 28  VHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPISAM 87

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA+++ M  +RV E+ATFYT F  +PVG + HVQVC T PC LRG +++++ C++ + 
Sbjct: 88  NHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTAPCWLRGSDEILQACKDNLG 146

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                   D   +  EVEC GACVNAPMV I  D YEDLT + + EI+D    G+    +
Sbjct: 147 VSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK----K 202

Query: 182 P--GPQIDRISSAPAGGLTSL 200
           P  GP+  R ++ P GG TSL
Sbjct: 203 PARGPRSSRYAAEPFGGPTSL 223


>gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Camponotus floridanus]
          Length = 323

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 115/199 (57%), Gaps = 4/199 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           + R +E +     F F E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A+ 
Sbjct: 113 MHRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMH 172

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA IL++  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + +++      + 
Sbjct: 173 KVAEILEVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDAIVKAVTAATNC 231

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    +I+AF   +G+   P
Sbjct: 232 EIGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVINAFK--KGERPPP 289

Query: 183 GPQ-IDRISSAPAGGLTSL 200
           GPQ   R ++ PAGGLTSL
Sbjct: 290 GPQNAPRFAADPAGGLTSL 308


>gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 259

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L GC   K+++   +
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +        SD   +  EVEC GACVNAPMV I  D YEDLTPE +  ++ A    + D
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217

Query: 179 -TIR---PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            T++   PGP   R S   + GLT+ L N S    + +KD ++
Sbjct: 218 VTVKVPAPGPLSGRKSCENSAGLTN-LTNPSWSPDRMRKDGEL 259


>gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta]
          Length = 243

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E +     F F+E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEHDNPNIPFEFNEANKKRIEALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P+G + H+Q+C  TPC LR  + ++       
Sbjct: 91  MHKVAEILGVPNMRVYEVATFYTMFNRKPMG-KYHIQICTCTPCWLRDSDSIVNAVTKAT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+A    +G+  
Sbjct: 150 NCELGGTSADKMFTVSEVECLGACANAPMFQVNDDYYEDLTPETTTAIINALK--KGERP 207

Query: 181 RPGPQ-IDRISSAPAGGLTSL 200
            PGPQ + R ++ PAGGLTSL
Sbjct: 208 PPGPQNVSRFAADPAGGLTSL 228


>gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit
           precursor [Glossina morsitans morsitans]
          Length = 242

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V+ ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPDVPFEFTAENQKRVDAILSIYPEGHKRGALIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++  C+  +
Sbjct: 91  MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILATCKKTL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPM+ I  D YEDLT + +EEI+      +    
Sbjct: 150 GIGVGETTKDMKFTISEVECLGACVNAPMIAINDDYYEDLTSKDMEEILADCKAER--VP 207

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           R GP+  R +S P G  TSL
Sbjct: 208 RAGPRNGRFASEPKGNPTSL 227


>gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
 gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
          Length = 237

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 2/196 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+ Q   F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 24  ISVHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISV 83

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G +++++   + +
Sbjct: 84  MNYVAKMLDMPPMRVYEVATFYTMYMRHPMG-KYNIQVCTTTPCQLCGSDEIMKAVTDFL 142

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ +G D +EDLTPE+  E++     G+    
Sbjct: 143 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVGDDYHEDLTPEKTVELLQKLKDGK-PVE 201

Query: 181 RPGPQIDRISSAPAGG 196
           + GP   R S  P  G
Sbjct: 202 KAGPVSGRHSCEPLSG 217


>gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 240

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 8/201 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
           V R + E  +   F F+ ++      ++S YP    ++A +PLL  AQ Q G W+  +A+
Sbjct: 30  VHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPISAM 89

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA+ +DM  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ + 
Sbjct: 90  NYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDNLG 148

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                   D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++       DT +
Sbjct: 149 VPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKV---DT-K 204

Query: 182 P--GPQIDRISSAPAGGLTSL 200
           P  GP+  R ++ P GG TSL
Sbjct: 205 PARGPRSSRYAAEPFGGPTSL 225


>gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 259

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 7/208 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L GC   K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    + D
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKGAETD 217

Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202
                  PGP   R S   + GLT+L +
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245


>gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
 gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
          Length = 218

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 10/198 (5%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
           +P+SF+F  ES   + +++ RYP  +  S VIPLL  AQ+Q G      WV R A++ +A
Sbjct: 11  EPASFAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSAWVPRVAMDTIA 70

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L MA IRV E+ATFY  F   P+G R H+QVCGTTPC LRG ++++  C+   H K  
Sbjct: 71  ERLGMAPIRVYEVATFYFMFNTRPIG-RFHLQVCGTTPCWLRGSDEVLRACKEHGHLKGY 129

Query: 126 HRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              S DG  +  EVEC G CVNAP++ +  D YED+  E   ++++A    +G+  +PG 
Sbjct: 130 GDTSEDGLFTMTEVECLGGCVNAPILQVDDDYYEDMDYETTVQLLEALK--RGERPKPGS 187

Query: 185 QIDRISSAPAGGLTSLLD 202
              R  SAP GG  ++LD
Sbjct: 188 MKGRQGSAPIGGPETVLD 205


>gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum]
 gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum]
          Length = 244

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 4/197 (2%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
            E+    + F F++E+     +++++YP    QSA+IPLL  AQ Q G W+S  A++ VA
Sbjct: 40  TEDNNDHTPFDFNQENLKKAEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLKAMDKVA 99

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           +I  +  +   E+A+FYT F  + VG +  VQVC TTPCMLRG E++++ CR+ +  +  
Sbjct: 100 HICGIPPMTAYEVASFYTMFNRTKVG-QNFVQVCTTTPCMLRGSEEIVKACRSNLGIEVG 158

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              +D   +  EVEC GACVNAPM+ +  D YEDLTPE   ++++       +T + GPQ
Sbjct: 159 ETTADNKFTLVEVECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIK--NNETTKIGPQ 216

Query: 186 IDRISSAPAGGLTSLLD 202
             R ++    G T+LL+
Sbjct: 217 THRKAAEGPHGKTTLLE 233


>gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
 gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
          Length = 255

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 19/199 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FSE++   V E+IS YP +  QSAVIPLL  AQ+Q G W+  +A++ VA ++++A IR
Sbjct: 47  WEFSEKNKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVIEVAPIR 106

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     +  K      DG  S
Sbjct: 107 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 165

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + YED+TP+R+ EI+D    G+     T  
Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVDMLRRGEKPPHGTQN 225

Query: 182 PGPQIDRISSAPAGGLTSL 200
           P     RI S P GG T+L
Sbjct: 226 P----KRIKSGPEGGNTTL 240


>gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 264

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 12/211 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L GC  +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173
            +      + + D   +  EVEC GACVNAPMV I  D YEDLTPE   ++++A      
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217

Query: 174 ---TGQGDTI-RPGPQIDRISSAPAGGLTSL 200
              +G+   I  PGP   R S   + GLTSL
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSL 248


>gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
 gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
          Length = 254

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 112/215 (52%), Gaps = 18/215 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  ++  YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP---------------ERL 165
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP               + +
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKVFFLFELCFFISIIQDV 205

Query: 166 EEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
            EI+D    G+      GP+  R+++ P G LTSL
Sbjct: 206 HEILDDLKAGRKPA--AGPRSGRLAAEPFGELTSL 238


>gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori]
 gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori]
          Length = 245

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 4/203 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R   E+     F FS+ +   V  +++ YP    + A+IPLL  AQ Q G W+  +
Sbjct: 31  LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA IL++  +RV E+ATFYT F   P+G + HVQVC TTPC LRG + ++   + +
Sbjct: 91  AMHKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            + +    +  G  S  EVEC GACVNAPM+ +  D YEDL+ E  +EII      + + 
Sbjct: 150 TNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEK 207

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PGP+  R +S P GGLTSL +
Sbjct: 208 PKPGPRSGRFASEPLGGLTSLTE 230


>gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis]
 gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 4/171 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F F+E +      +++ YP    ++AVIPLL  AQ Q +GW+  +A+  VA+ L+M  +R
Sbjct: 29  FEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAMNYVADFLNMPRMR 88

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F   PVG + HVQVC TTPC LR  + L++  ++K+  K    + DG  +
Sbjct: 89  VYEVATFYTMFNREPVG-KYHVQVCTTTPCQLRNADDLLDTLKSKLGIKEGETSKDGMFT 147

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              VEC GACVNAPM+ I  + YEDL+ +  EEIID    G+  T +PGP+
Sbjct: 148 LTVVECLGACVNAPMMQINDNYYEDLSMKDAEEIIDDLIAGR--TPKPGPR 196


>gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS]
          Length = 264

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 12/211 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L GC  +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173
            +      + + D   +  EVEC GACVNAPMV I  D YEDLTPE   ++++A      
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217

Query: 174 ---TGQGDTI-RPGPQIDRISSAPAGGLTSL 200
              +G+   I  PGP   R S   + GLTSL
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSL 248


>gi|226500344|ref|NP_001140609.1| hypothetical protein LOC100272681 [Zea mays]
 gi|194700168|gb|ACF84168.1| unknown [Zea mays]
          Length = 324

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  AA++ +A I+++A IR
Sbjct: 116 WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 175

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 176 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 234

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 235 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 292

Query: 185 QI-DRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 293 QHPERKNCGPAGGNTTL 309


>gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 275

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 115/198 (58%), Gaps = 15/198 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+  +   V E++S YP +  QSAVIP+L  AQ+Q G W+S  A+  +A I+D A IR
Sbjct: 67  WDFTPANMEKVKELLSHYPKNYKQSAVIPMLDLAQQQNGGWLSVQAMNRIAEIVDYAPIR 126

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F   PVG + H+ VCGTTPCMLRG   + +     +H        DG  S
Sbjct: 127 VYEVATFYSMFNRQPVG-KYHLLVCGTTPCMLRGSRDIEDALLKHLHVARNEVTKDGLFS 185

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+++            + YEDLTPER+ E+++     QG   + G 
Sbjct: 186 VGEMECMGCCVNAPMIVVADYSNGVEGYSYNYYEDLTPERVVELVEELK--QGKKPKWGT 243

Query: 185 Q-IDRISSAPAGGLTSLL 201
           Q   RI+  PAGG T+LL
Sbjct: 244 QHPKRINCGPAGGTTTLL 261


>gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Nasonia vitripennis]
          Length = 243

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E++     F F   +   +  ++  YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTEQDNPNIPFEFDAANKKRIEAILKIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL ++ +RV E+ATFYT F   P+G + HVQVC  TPC LR  + +++  +   
Sbjct: 91  MHKVAEILGVSNMRVYEVATFYTMFNRRPMG-KYHVQVCTCTPCWLRDSDSIMKAVKELT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    + D   S  EVEC GAC NAPM+ +  D YEDLTPE    II+A    +G+  
Sbjct: 150 NCEVGGNSPDNMFSISEVECLGACANAPMLQVNDDYYEDLTPETTATIINALK--RGERP 207

Query: 181 RPGPQI-DRISSAPAGGLTSL 200
            PGPQ  +R ++ P GGLTSL
Sbjct: 208 APGPQCKNRYAAEPNGGLTSL 228


>gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 259

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 7/208 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L GC   K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    + +
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217

Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202
                  PGP   R S   + GLT+L +
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245


>gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays]
          Length = 281

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  AA++ +A I+++A IR
Sbjct: 73  WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 132

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 133 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 191

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 192 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 249

Query: 185 QI-DRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 250 QHPERKNCGPAGGNTTL 266


>gi|224028933|gb|ACN33542.1| unknown [Zea mays]
          Length = 281

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  AA++ +A I+++A IR
Sbjct: 73  WEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVAAMDAIAKIVEVAPIR 132

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 133 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEHLGVKRNEVTSDGLFS 191

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 192 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLR--RGETPPRGT 249

Query: 185 Q-IDRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 250 QHPERKNCGPAGGNTTL 266


>gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           capsulatus H143]
 gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 259

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 116/208 (55%), Gaps = 7/208 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L GC   K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    + +
Sbjct: 158 HLGVSNGQTTLDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217

Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLD 202
                  PGP   R S   + GLT+L +
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLTN 245


>gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum]
          Length = 263

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FSF+ ++   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 21  FSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGFASISVMNEVARILEMPPMRV 80

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT +   PVG + H+QVC TTPCML   + +++     +  KP +   DG  ++
Sbjct: 81  YEVATFYTMYNRDPVG-KYHLQVCTTTPCMLCDSDSVMQAVEKFLGVKPGNTTQDGIFTF 139

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            EVEC GACVN PMV I  D YEDLT E + ++++A 
Sbjct: 140 SEVECLGACVNGPMVQINDDYYEDLTAESVTKLLEAL 176


>gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 260

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 10/195 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+E++   + E++ +YPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FKFNEKNQAVIAEILKKYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  VQ+C TTPC L GC  + +++  +N +  K     +DG  
Sbjct: 114 YEVASFYTMYNRTPVG-KFFVQICTTTPCQLGGCGSDVIVKAIKNHLGIKQGETTADGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT-------IRPGPQI 186
           +  EVEC GACVNAPM+ I  D YEDLTPE + +++ A       T        +PGP  
Sbjct: 173 TILEVECLGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATATDPSTVSVPKPGPLS 232

Query: 187 DRISSAPAGGLTSLL 201
            R +   + G T+LL
Sbjct: 233 GRSTCENSAGQTNLL 247


>gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 267

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 55  FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++     +        + DG 
Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G   +++   P
Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKVPPP 233

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253


>gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 267

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 55  FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++     +        + DG 
Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G   +++   P
Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKIPAP 233

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 234 GPLSGRQTCENSAGLTSLTE 253


>gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
 gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
          Length = 267

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 55  FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++     +        + DG 
Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G   +++   P
Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQSSVKVPPP 233

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253


>gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407]
          Length = 272

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS ++   + E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 67  FQFSADNKNVIQEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 126

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  VQ C TTPC L GC  + +++  +  +  K     +DG  
Sbjct: 127 YEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 185

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG----QGDTIRP--GPQID 187
           ++ EVEC GACVNAPM+ I    YEDLTPE ++ ++           G T  P  GP   
Sbjct: 186 TFIEVECLGACVNAPMIQINDHYYEDLTPETVKSLLSGLKAAALDPSGKTPEPKVGPTTG 245

Query: 188 RISSAPAGGLTSLLD 202
           R S   + GLTSL D
Sbjct: 246 RHSCENSAGLTSLTD 260


>gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica]
          Length = 238

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 121/211 (57%), Gaps = 23/211 (10%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEG-WVSRAA 60
           V R  +E      F ++EE+ + +  + ++YP     +A ++P+L  AQ Q G W+  + 
Sbjct: 23  VHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLAQRQYGGWLPLSV 82

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC------EKLIE 114
           ++ VA  LD+  IRV E+ATFYT ++  PVG + H+Q+CGTTPCM+ GC      E ++E
Sbjct: 83  MDAVAATLDVPPIRVYEVATFYTMYKRVPVG-KYHIQLCGTTPCMIGGCGAKKIKEAILE 141

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII----- 169
                 H   L   SD   S+EEVEC GACVNAPMV I  D YEDLT + ++ I+     
Sbjct: 142 EVGIGHHNDEL--TSDKMFSYEEVECLGACVNAPMVQINDDYYEDLTEQDMKTILRDLRK 199

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           D FS       R GP+  R+SS P GG TSL
Sbjct: 200 DGFS-------RKGPRNGRVSSEPLGGATSL 223


>gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group]
          Length = 274

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  AA+  +A I+++A IR
Sbjct: 66  WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242

Query: 185 QI-DRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 243 QHPERKNCGPAGGNTTL 259


>gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica
           Group]
 gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  AA+  +A I+++A IR
Sbjct: 66  WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242

Query: 185 QI-DRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 243 QHPERKNCGPAGGNTTL 259


>gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group]
          Length = 274

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 15/197 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  AA+  +A I+++A IR
Sbjct: 66  WEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIR 125

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     +  K     SDG  S
Sbjct: 126 VYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFS 184

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ EI++     +G+T   G 
Sbjct: 185 VGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIVEMLK--RGETPPRGT 242

Query: 185 QI-DRISSAPAGGLTSL 200
           Q  +R +  PAGG T+L
Sbjct: 243 QHPERKNCGPAGGNTTL 259


>gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum
           CBS 118892]
          Length = 267

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 55  FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++     +        + DG 
Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 173

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-------STGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G   +++   P
Sbjct: 174 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALRASAVAAENGTQSSVKVPPP 233

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 234 GPLSGRHTCENSAGLTSLTE 253


>gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
 gi|150854112|gb|EDN29304.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
          Length = 271

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 99/161 (61%), Gaps = 3/161 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ ++   + E++ +YPP   ++AV+P+L   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 33  FKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQHGFTSLSVMNEVARLLEMPPMRV 92

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+ATFYT +  +PVG + HVQ C TTPC L GC  + +++     +  KP H   DG  
Sbjct: 93  YEVATFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIEGHLGIKPGHTTKDGLF 151

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           ++ EVEC GACVNAPMV I  D YEDLTPE    ++ A  +
Sbjct: 152 TFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQS 192


>gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14]
          Length = 267

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 8/187 (4%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           SSF F+ E+   V+ ++ RYP +   SA+IPLL  AQ Q G W+  AA+  VA I+D+  
Sbjct: 45  SSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMNKVARIVDVKP 104

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I+V E+ATFYT F    VG +  +Q+CGTTPCM+ G E++       +  K      DG 
Sbjct: 105 IQVYEVATFYTMFNREKVG-KFFIQLCGTTPCMICGSEEIKHTIEEHLGIKEGETTKDGM 163

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPMV I  D YE+LTPE  +E+++A   GQ       P++ +  S 
Sbjct: 164 FTLREVECLGACANAPMVQINDDFYENLTPETTKELLEACKCGQ------PPKMSKWGSL 217

Query: 193 PAGGLTS 199
           P  G  S
Sbjct: 218 PLNGQLS 224


>gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
 gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
          Length = 184

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           FSFS ++ +   ++I+ YP  +  SAV+ +L  AQ Q   W+S + IE VA +L M YI+
Sbjct: 9   FSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYIK 68

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V EIA+FYT F L P+G + H+Q+C TTPC LRG + ++  C+  +  +    + D   +
Sbjct: 69  VYEIASFYTMFNLQPIG-KYHIQICCTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLFT 127

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             E EC GAC NAP+V I  D YE+LT +++EEII+
Sbjct: 128 VSETECLGACRNAPVVQINHDYYENLTNDKIEEIIN 163


>gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi]
 gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi]
          Length = 248

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 112/189 (59%), Gaps = 5/189 (2%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S F F+ E+     E++S YP +  + A++PLL  AQ Q GW+   AI+ VA++L +   
Sbjct: 43  SKFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLEPF 102

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+A+FYT F L+PVG + H++VC TTPC LRGC ++++ C   +H K    + D   
Sbjct: 103 AVWEVASFYTMFNLTPVG-KFHIKVCMTTPCQLRGCAQILQKCEELLHLKAGETSEDMEF 161

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSA 192
           + +   C GACV+AP++ +  D YEDL  + +E I+     G    + P GP+  R ++ 
Sbjct: 162 TLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAGN---VPPCGPRKGRFANE 218

Query: 193 PAGGLTSLL 201
           P+ G+T+L 
Sbjct: 219 PSSGVTTLF 227


>gi|145612669|ref|XP_367376.2| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
 gi|145019806|gb|EDK04034.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
          Length = 257

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS ++   + EV+ RYPP   ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 58  FKFSAQNEKVITEVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISVMNEVARILEMPPMRV 117

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  VQ C TTPC L GC  + +++  + ++         DG  
Sbjct: 118 YEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDAIVKAIKEELGISQGQTTPDGLF 176

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           ++ EVEC GACVNAPM+ I  D YEDLTPE  + ++             GP   R S   
Sbjct: 177 TFIEVECLGACVNAPMIQINDDYYEDLTPETTKSLLAGLKDPSKAVPPAGPLSGRHSCEH 236

Query: 194 AGGLTSL 200
           +GGLT+L
Sbjct: 237 SGGLTNL 243


>gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 251

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 3/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  + +     F F+ ++     E+I++YPP   ++AV+PLL   Q Q G+ + + 
Sbjct: 39  ISVHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + H+QVC TTPC L G +++++  +N +
Sbjct: 99  MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYHLQVCTTTPCQLCGSDEVMDAIKNHL 157

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + EEVEC GACVN PM+ +  D  EDLT E+  E++      +G  +
Sbjct: 158 KIKPGQTTPDNLFTLEEVECLGACVNGPMMGVNDDYAEDLTGEKTVELLKNLQ--EGKPM 215

Query: 181 RPGPQIDRISSAPAGGLTSLL 201
             GP   R S  P  G   LL
Sbjct: 216 HVGPVSGRDSCEPFSGPKVLL 236


>gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama]
 gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 181

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62
           +R+A    QP  F FSEE++  V  ++++YP SR +SAV+PLL   Q Q E W+  AA++
Sbjct: 12  KRIAHASIQPDKFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMD 71

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L +  I+V E+A+FY+ F  +PVG    ++VC TTPC LRG + LIE  + ++  
Sbjct: 72  HVAQLLGLPVIKVYEVASFYSMFNTAPVGKHT-IRVCRTTPCWLRGSDCLIEAAKRELGI 130

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           K  H+  D   S +EVEC GACV+AP+V I  D +E+L      E++
Sbjct: 131 KVGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELL 177


>gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 277

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 15/198 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F++ +   VNE++S YP +  QS +IP+L  AQ+Q G WV  AA++ +A I+ +A IR
Sbjct: 69  WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 128

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + +     +  K     SDG  S
Sbjct: 129 VYEVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDIEDALLEHLGVKRNEVTSDGLFS 187

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+R+ E+++     +G+T   G 
Sbjct: 188 VGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELVEMLR--RGETPPRGT 245

Query: 185 Q-IDRISSAPAGGLTSLL 201
           Q  +R +  PAGG+T+LL
Sbjct: 246 QNPERKNCGPAGGMTTLL 263


>gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 242

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 3/200 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+    +F F+ E+      +++ YP    ++A++PLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPDVNFDFTPENMKRAEAIMAIYPEGHKRAALLPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT +   P+G + H+QVC TTPC LR  + ++ V + K+
Sbjct: 91  MHKVAEILNLPKMRVYEVATFYTMYMRKPMG-KYHIQVCTTTPCWLRDSDSIMNVIKKKL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +        D   +  EVEC GACVNAPMV I  D YEDLT E + +I++  + G+    
Sbjct: 150 NINVGETTKDKLFTLSEVECLGACVNAPMVQINDDYYEDLTEESMNQILEDLANGRKP-- 207

Query: 181 RPGPQIDRISSAPAGGLTSL 200
           + GPQ  R S  P GGLTSL
Sbjct: 208 KAGPQSGRCSCEPHGGLTSL 227


>gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
 gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
          Length = 254

 Score =  140 bits (354), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 15/209 (7%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
           +++  + + F F++ +     E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  +A
Sbjct: 37  SQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMNKIA 96

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            I+ +  IRV E+ATFY+ F  + VG + H+QVCGTTPCM+RG   +       +  K  
Sbjct: 97  EIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGVKRN 155

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTG 175
               DG  S  E+EC G CVNAPMV++   T          YEDLTP+R+ EI++    G
Sbjct: 156 EVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEMLRKG 215

Query: 176 QGDTIRPGPQ-IDRISSAPAGGLTSLLDN 203
           +   +  G Q   RI   PAGG T+LL +
Sbjct: 216 EKPPV--GTQNPTRIKCGPAGGNTTLLSD 242


>gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
 gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
          Length = 222

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 119/209 (56%), Gaps = 15/209 (7%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
           +++  + + F F++ +     E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  +A
Sbjct: 5   SQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMNKIA 64

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            I+ +  IRV E+ATFY+ F  + VG + H+QVCGTTPCM+RG   +       +  K  
Sbjct: 65  EIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGVKRN 123

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTG 175
               DG  S  E+EC G CVNAPMV++   T          YEDLTP+R+ EI++    G
Sbjct: 124 EVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEMLRKG 183

Query: 176 QGDTIRPGPQ-IDRISSAPAGGLTSLLDN 203
           +   +  G Q   RI   PAGG T+LL +
Sbjct: 184 EKPPV--GTQNPTRIKCGPAGGNTTLLSD 210


>gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
 gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
          Length = 294

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 118/241 (48%), Gaps = 42/241 (17%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   + E++SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LNVHRDTPENNANIPFEFTAQNKELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +  +P G + HVQ+C TTPCMLR  + +++ C + +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRNPTG-KFHVQICTTTPCMLRDSDAVMKACEDTL 157

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-----STG 175
                    DG  +  EVEC GAC NAPMV I  D YEDLT E    ++ A      +TG
Sbjct: 158 GIHHGQTTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYESTVSLLKALRHASEATG 217

Query: 176 ----------------------------QGDTIR--------PGPQIDRISSAPAGGLTS 199
                                       QG +I         PGP   R S  PAGGLT 
Sbjct: 218 ANLGGADGLNTKGNNASPNSAGEDAINRQGRSIEAGNLKIPSPGPLSGRKSCEPAGGLTC 277

Query: 200 L 200
           L
Sbjct: 278 L 278


>gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis]
          Length = 253

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/205 (43%), Positives = 123/205 (60%), Gaps = 29/205 (14%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   V E+I+ YP +  QSAVI LL  AQ+Q G W+  +A+  VA +L+MA IR
Sbjct: 45  WEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVSAMNKVAEVLEMAPIR 104

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG-CE------KLIEVCRNKIHQKPLHR 127
           V E+ATFYT F  + VG + H+ VCGTTPCM+RG C+      K + V RN++ +     
Sbjct: 105 VFEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSCDIEGAILKHLGVKRNEVTK----- 158

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQG 177
             DG  S  E+EC G CVNAPM+ +   T          YED+TP+R+ EI++     +G
Sbjct: 159 --DGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEMLR--RG 214

Query: 178 DTIRPGPQ-IDRISSAPAGGLTSLL 201
           +T   G Q  DRI + PAGG T+LL
Sbjct: 215 ETPPVGTQNPDRIMAGPAGGNTTLL 239


>gi|312222072|emb|CBY02012.1| hypothetical protein [Leptosphaeria maculans]
          Length = 297

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 118/242 (48%), Gaps = 43/242 (17%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   ++E++SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 41  LNVHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT +   PVG + HVQVC TTPCMLR  + +++ C +++
Sbjct: 101 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLRDSDAVMKACEDEL 159

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF-------- 172
                    DG  +  EVEC GAC NAPMV I  D YEDLT +    +I A         
Sbjct: 160 GIHHGETTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYDSTVALIKALRHAAQATG 219

Query: 173 ------------------STGQGDTI----------------RPGPQIDRISSAPAGGLT 198
                             + G GD +                 PGP   R S  PAGGLT
Sbjct: 220 AQPGGKGLVSGAGNGNASNEGAGDKLVNQQGRGYDFGGVKVPTPGPLSGRKSCEPAGGLT 279

Query: 199 SL 200
            L
Sbjct: 280 CL 281


>gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis]
          Length = 1053

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 5/187 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSEE+   V  + + YP     +A++P+L  AQ Q GW+  +A+  VA+++ +  +R+
Sbjct: 43  FEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMNKVADVIGVPKMRI 102

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNS-DGTL 133
            E+ATFYT +    VG + HVQVC TTPCMLRG +++++  + + +    +  NS D   
Sbjct: 103 YEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLGSDAVGENSQDFMF 161

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GAC NAPM+ I  D YEDLT + +  I +    G+   +  GPQ  R+++ P
Sbjct: 162 TVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFNEIRAGKKPKM--GPQSGRLAAEP 219

Query: 194 AGGLTSL 200
             GLTSL
Sbjct: 220 ISGLTSL 226


>gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
 gi|74851521|sp|Q54F10|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; Flags: Precursor
 gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
          Length = 247

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 4/197 (2%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVA 65
            E+  + + F F++E+ + V +++++YP    QSA+IPLL  AQ Q G W+S  A++ VA
Sbjct: 43  TEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLRAMDKVA 102

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           +I  +A +   E+A+FYT F  + +G    VQVC TTPCMLRG  ++I+ C++ +  +  
Sbjct: 103 HICGIAPMTAYEVASFYTMFNRTKIG-ENFVQVCTTTPCMLRGSGEIIKTCKSHLGIQVG 161

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               D   +  EVEC GACVNAPM+ I  D YEDLT      ++D     +   I  GPQ
Sbjct: 162 ETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNKPTKI--GPQ 219

Query: 186 IDRISSAPAGGLTSLLD 202
             R ++    G T+LL+
Sbjct: 220 THRKAAEGPQGKTTLLE 236


>gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 27  ISVHRDTKEDNPNIPFEFTSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + ++E   N +
Sbjct: 87  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMEAITNHL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             KP     D   + +EVEC GACVNAPM+ I  D +EDLTPE   +++     G+
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATVKLLQQLQEGK 201


>gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 305

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 9/195 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F++E+   + E++ RYP    ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 100 FKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 159

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  SPVG +  VQ C TTPC L GC  + +++  +  +  K     +DG  
Sbjct: 160 YEVASFYTMYNRSPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 218

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI------RPGPQID 187
           ++ EVEC GACVNAPM+ I  D YEDLTPE + +++ A     G+        +PGP   
Sbjct: 219 TFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGEASAAAKVPKPGPLTG 278

Query: 188 RISSAPAGGLTSLLD 202
           R +   + G T+LLD
Sbjct: 279 RDTCENSKGQTNLLD 293


>gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis]
          Length = 293

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 15/195 (7%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72
           + F F++ +     E+ISRYP +   SAVIPLL  AQ+Q +GW+S AA+  VA +LDM  
Sbjct: 62  TEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGWLSLAAMNRVAKVLDMPE 121

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IRV E+ATFYT F  S +G + HV VCGTTPCML+G + + +  +  +         DG 
Sbjct: 122 IRVYEVATFYTMFNRSKMG-KYHVMVCGTTPCMLQGAKGIYKALKEHLGIDYGQTTPDGM 180

Query: 133 LSWEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQGDTIRP 182
            +  E+EC GACVNAPM+ +   T          YEDLTP     IID     +G   + 
Sbjct: 181 FTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYEDLTPADTLAIIDTLK--KGGKPKV 238

Query: 183 GPQIDRISSAPAGGL 197
           G Q  R  + PAG +
Sbjct: 239 GSQ-HRSKAEPAGAV 252


>gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 15/196 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +A  V E++ RYPP+  +SA+IPLL  AQ+Q G ++S   +  VA IL++A IR
Sbjct: 15  WDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQVMNRVAEILEVAPIR 74

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F   PVG + HV VCGTTPCMLRG  ++       +  K      DG  +
Sbjct: 75  VFEVATFYSMFNRQPVG-KYHVMVCGTTPCMLRGSREVNAALEQHLGIKKFENTPDGMFT 133

Query: 135 WEEVECQGACVNAPMVMIGKDT----------YEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G+CVNAPM+ +   T          YEDLTP     ++ A   GQ    R G 
Sbjct: 134 LGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADAVAVVKALKAGQ--KPRVGS 191

Query: 185 QIDRISSAPAGGLTSL 200
           Q  R  + P GG  +L
Sbjct: 192 Q-HRDKAEPMGGQQTL 206


>gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
 gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
          Length = 378

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 14/200 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 166 FKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 225

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C TTPC L GC  +K+++     +        + DG 
Sbjct: 226 YEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLGVSSHGATTPDGI 284

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G   +++   P
Sbjct: 285 FTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAENGTQPSVKVPPP 344

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 345 GPLSGRHTCENSAGLTSLTE 364


>gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 264

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 12/211 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R + E      F F+E++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L GC  +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG-- 175
            +      + + D   +  EVEC GACVNAPMV I  + YEDLTP+   ++++A      
Sbjct: 158 HLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQINDEYYEDLTPDTAVQLLEALKESAL 217

Query: 176 ---QGDTIR---PGPQIDRISSAPAGGLTSL 200
               G  ++   PGP   R S   + GLT+L
Sbjct: 218 AGESGKKVKVPAPGPLSGRHSCENSAGLTNL 248


>gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 166

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 97/158 (61%), Gaps = 1/158 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FSF+ E+     + I  YP  R  SAV+PLL   QEQ GWVS +A+  VA++L + +IRV
Sbjct: 8   FSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIRV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   + 
Sbjct: 68  YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +EVEC GACVNAP+V I  D YE+LTPE++E II   S
Sbjct: 127 KEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 164


>gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor
           [Metarhizium acridum CQMa 102]
          Length = 259

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 9/195 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F++E+   + E++ RYP    ++AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 54  FKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISVMNEVARLLEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  VQ C TTPC L GC  + +++  +  +  K     +DG  
Sbjct: 114 YEVASFYTMYNRNPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKEHLGIKQGETTADGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI------RPGPQID 187
           ++ EVEC GACVNAPM+ I  D YEDLTPE + +++ A     GD        +PGP   
Sbjct: 173 TFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGDASAAAKVPKPGPLTG 232

Query: 188 RISSAPAGGLTSLLD 202
           R +   + G T+LLD
Sbjct: 233 RDTCENSKGQTNLLD 247


>gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 8/207 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 27  ISVHRETKEDNTTLPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++  +  +
Sbjct: 87  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNIQVCTTTPCQLCGSDGIMDAIKGYL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT- 179
             KP     D   + +EVEC GACVNAPM+ +  D +EDLTPE   +++     G GD  
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVNDDYHEDLTPEATVDLLKKLKEG-GDNF 204

Query: 180 ----IRPGPQID-RISSAPAGGLTSLL 201
               I  GP ++ R S  P  G   LL
Sbjct: 205 ELSEIGVGPVLNKRESCEPFSGQKVLL 231


>gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 257

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 107/185 (57%), Gaps = 3/185 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+        E+I++YP    + A +PLL  AQ Q GWVS +++  +A +L+M  +RV
Sbjct: 61  FEFTPAEMKRAQEIIAKYPAQYKKGATMPLLDLAQRQLGWVSISSMNYIAKLLEMPPMRV 120

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT +   PVG +  +QVC TTPC L G + +++     +  K     SD   + 
Sbjct: 121 YEVATFYTMYNRDPVG-KYFLQVCTTTPCQLCGSDAIVKAAEETLGIKLGETTSDNMFTL 179

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            EVEC GACVNAP++ +  D YEDLT +  + +++  S  +G   +PGP   R++  P  
Sbjct: 180 VEVECAGACVNAPVMAVNDDYYEDLTVDATKSLLE--SIKKGTVPKPGPVSGRMNCEPRA 237

Query: 196 GLTSL 200
           GLTSL
Sbjct: 238 GLTSL 242


>gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 243

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 118/205 (57%), Gaps = 29/205 (14%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+  +   V E++S YP +  QSAVIPLL  AQ+Q+G W+   A+  +A I+  A IR
Sbjct: 35  WDFTPANMEKVKELLSHYPKNYKQSAVIPLLDLAQQQQGGWLPVQAMNRIAEIVGYAPIR 94

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE-------KLIEVCRNKIHQKPLHR 127
           V E+ATFY+ F   PVG R H+ VCGTTPCMLRG         K + V RN++       
Sbjct: 95  VYEVATFYSMFNRQPVG-RYHLLVCGTTPCMLRGSREIEDALLKHLNVARNEV------- 146

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQG 177
             DG  S  EVEC G+CVNAPM+++            + YEDLT ER+ E+++     QG
Sbjct: 147 TKDGLFSVGEVECMGSCVNAPMIVVADYSNGVEGYSYNYYEDLTTERVVELVEELR--QG 204

Query: 178 DTIRPGPQI-DRISSAPAGGLTSLL 201
              + G Q  +RI+  PAGG T+LL
Sbjct: 205 KKPKWGTQHPERINCGPAGGNTTLL 229


>gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1]
          Length = 260

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 10/209 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E+      F F+ E+   + E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LMVHRNTEDNNPDIPFKFNAENQKVMAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG +  VQ+C TTPC L GC  + +++  + 
Sbjct: 99  MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQICTTTPCQLGGCGSDVIVKAIKE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           ++  +     +DG  +  EVEC GACVNAPM+ I  D YEDLTP  +++++ +  +    
Sbjct: 158 ELGIEQGQTTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPASVKDLLKSLRSKATA 217

Query: 179 T-------IRPGPQIDRISSAPAGGLTSL 200
           T        +PGP   R     + GLTSL
Sbjct: 218 TDPSTVNVPKPGPLSGRKDCENSAGLTSL 246


>gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 252

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ ++   + E++ RYPP   ++AV+P+L   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 54  FKFTPQNEAVIAELLKRYPPQYKKAAVMPVLDLGQRQHGFTSISVMNEVARILEMPPMRV 113

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  +Q C TTPC L GC  + +++     +  K     +DG  
Sbjct: 114 YEVASFYTMYNRTPVG-KFFIQACTTTPCQLGGCGSDAIVKTIEEHLGIKQGETTADGLF 172

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           S+ EVEC GACVNAPMV I  D YEDLTPE   ++IDA 
Sbjct: 173 SYLEVECLGACVNAPMVQINDDYYEDLTPETTRQLIDAL 211


>gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
 gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
          Length = 166

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 1/158 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FSF+ E+     + I  YP  R  SAV+PLL   QEQ GWVS +A+  VA++L + +IRV
Sbjct: 8   FSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHIRV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   + 
Sbjct: 68  YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +EVEC GAC+NAP+V I  D YE+LTPE++E II   S
Sbjct: 127 KEVECLGACINAPVVQINNDFYENLTPEKVENIIAELS 164


>gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis]
 gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis]
          Length = 247

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+EE+   V E++  YP    + A++PLL  AQ Q GW+   AI+ VA +L +    V
Sbjct: 44  FEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVAEVLKLEPFAV 103

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FYT F + P+G +  V+VC TTPC LRGC  ++ +C   +  K    + D   + 
Sbjct: 104 WEVANFYTMFNMRPIG-KYRVKVCMTTPCQLRGCADVLRICEKTLDLKDGETSKDMEFTL 162

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
               C GACVN P++ +  D YEDL  +  E+I+     G+     PGP+  R +S P  
Sbjct: 163 NTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGKLPP--PGPRSGRFASEPIT 220

Query: 196 GLTSLL 201
           G TSLL
Sbjct: 221 GPTSLL 226


>gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis]
          Length = 241

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 5/187 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FSEE+   V  + + YP     +A++P+L  AQ Q GW+  +A+  VA+++ +  +R+
Sbjct: 43  FEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISAMNKVADVIGVPKMRI 102

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNS-DGTL 133
            E+ATFYT +    VG + HVQVC TTPCMLRG +++++  + + +    +  NS D   
Sbjct: 103 YEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKECLGSDAVGENSQDFMF 161

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GAC NAPM+ I  D YEDLT + +  I      G+   +  GPQ  R+++ P
Sbjct: 162 TVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFSEIRAGKKPKM--GPQSGRLAAEP 219

Query: 194 AGGLTSL 200
             GLTSL
Sbjct: 220 ISGLTSL 226


>gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa]
 gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 113/199 (56%), Gaps = 19/199 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FS  +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  VA ++++A IR
Sbjct: 46  WEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 105

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     +  K      DG  S
Sbjct: 106 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 164

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + YED+TP+R+ EI++    G+     T  
Sbjct: 165 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGEKPPHGTQN 224

Query: 182 PGPQIDRISSAPAGGLTSL 200
           P     RI   P GG T+L
Sbjct: 225 P----KRIKCGPEGGNTTL 239


>gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
 gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
          Length = 297

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 110/227 (48%), Gaps = 43/227 (18%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ ++   + EV+SRYP    ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 56  FKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRV 115

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT +   PVG + HVQVC TTPCML   + +++ C + +         DG  ++
Sbjct: 116 YEVATFYTMYNRDPVG-KFHVQVCTTTPCMLCDSDSVMKACEDVLGVHHGETTPDGLFTF 174

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----------------------- 172
            EVEC GAC NAPMV I  D YEDLT E    ++ A                        
Sbjct: 175 SEVECLGACANAPMVQINDDYYEDLTYESTVNLLKALKHAAQATGAQPGDKGLASGAGKG 234

Query: 173 ---STGQGDTI----------------RPGPQIDRISSAPAGGLTSL 200
                G GD +                 PGP   R S  PAGGLT L
Sbjct: 235 TTTGEGAGDAVANAQGRQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 281


>gi|115618122|ref|XP_797683.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
 gi|115950060|ref|XP_001178877.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
          Length = 152

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 3/139 (2%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA+IL M  +RV E+ATFYT F  +PVG + H+Q+C TTPCMLR  + ++EV   K+  K
Sbjct: 4   VADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKLGIK 62

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 D   +  EVEC GACVNAPMV I  + YEDL  + +EEIID    G+  T +PG
Sbjct: 63  VGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TPKPG 120

Query: 184 PQIDRISSAPAGGLTSLLD 202
           P+  R +S P GGLTSL+D
Sbjct: 121 PRNARFASEPEGGLTSLID 139


>gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus
           ovalis]
          Length = 259

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 6/192 (3%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           + F F+ E+   +N ++ RYP +  +SAV+ LL  AQ+Q G +++ AA+  VA IL+M  
Sbjct: 39  TYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLAAMNKVAKILEMTN 98

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+A FY+ F    VG +  +Q+CGTTPC+L G   +++ C + +  K      DG 
Sbjct: 99  LNVYEVAAFYSMFNREKVG-KIRLQICGTTPCLLCGARDIMKACEDHLGIKMGGTTKDGM 157

Query: 133 LSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RIS 190
            + EEVEC G C NAPM+ +  +  YEDLTPE + E+++ F   +G+ I+ GPQ   R +
Sbjct: 158 FTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFR--KGEEIKAGPQTKGRKN 215

Query: 191 SAPAGGLTSLLD 202
           +    G T+L D
Sbjct: 216 AEGPLGRTTLND 227


>gi|254796983|ref|YP_003081820.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
           Illinois]
 gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
           Illinois]
          Length = 172

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62
           +R+A    QP  F FSEE++  V  ++++YP SR +SA++PLL   Q+Q E W+  AA++
Sbjct: 3   KRIAHASIQPDKFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMD 62

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L +  I+V E+ +FY+ F  +PVG    ++VC TTPC LRG + L +  + ++  
Sbjct: 63  HVAQLLGLPAIKVYEVVSFYSMFNTAPVGKHT-IRVCRTTPCWLRGSDCLTKAAKRELGI 121

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           K  H   D   S +EVEC GACVNAP+V I  D +E+L  +   E++
Sbjct: 122 KVGHTTEDNKFSLDEVECLGACVNAPVVQINDDYFENLDEKSFLELL 168


>gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1]
          Length = 243

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 5/204 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+    +F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 29  ISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++   + +
Sbjct: 89  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDSIMKAITDYL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ I  D +EDL+PE    ++     G+ +  
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGK-ELT 206

Query: 181 RPGPQID--RISSAPAGGLTSLLD 202
             GP +D  R S  P  G   LL+
Sbjct: 207 EIGP-VDGKRQSCEPFSGPKVLLN 229


>gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase, E subunit [Magnetococcus sp. MC-1]
 gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus sp. MC-1]
          Length = 170

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 2/159 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRV 75
           +FS+E+   V  + +RYP  + QSA++P+L  AQ E  GW+SRA+++ VA ++ +A IRV
Sbjct: 11  AFSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAELMGLAPIRV 70

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT + L PVG + HVQVC    C L G + + E  + ++  +      DG  + 
Sbjct: 71  YEVATFYTMYNLKPVG-KHHVQVCTNISCWLCGSDGIGEAVKQRLEIEYGQTTEDGNFTL 129

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            EVEC GACVNAPM  I  D YE+LTPE   +IID  + 
Sbjct: 130 SEVECLGACVNAPMFQINDDYYENLTPETAVKIIDELAN 168


>gi|190570998|ref|YP_001975356.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 166

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 1/159 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FSF+ ++     + I  YP  R  SAV+PLL   QEQ GWV  +A+  VA++L + +IRV
Sbjct: 8   FSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHIRV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   + 
Sbjct: 68  YEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLFTL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +EVEC GACVNAP+V I  D YE+LTPE++E II   S+
Sbjct: 127 KEVECLGACVNAPVVQINNDFYENLTPEKVENIIAELSS 165


>gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 243

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 114/204 (55%), Gaps = 5/204 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 29  ISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++   + +
Sbjct: 89  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMKAITDYL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ I  D +EDLTPE    ++     G+ +  
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATINLLKQLQEGK-ELT 206

Query: 181 RPGPQID--RISSAPAGGLTSLLD 202
             GP +D  R S  P  G   LL+
Sbjct: 207 EIGP-VDGKRQSCEPFSGPKVLLN 229


>gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis]
 gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis]
          Length = 246

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 7/193 (3%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           ++   F F EE+      +IS YP    + A++PLL  AQ Q GW+   AI+ VA +L +
Sbjct: 39  YEKLKFEFDEENKKRAEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVAEMLKL 98

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V E+A FYT F L P+G    ++VC TTPC LRGC+++   C N +  K    + D
Sbjct: 99  EPFVVWEVANFYTMFNLRPIGM-FRLKVCMTTPCRLRGCDEIWRTCENVLKLKDGETSKD 157

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP--GPQIDR 188
              +     C GACVN P++ +  D YEDL     E+++    +G    I P  GP+ DR
Sbjct: 158 MQFTLTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSG----IMPPAGPRRDR 213

Query: 189 ISSAPAGGLTSLL 201
            +S P  GLTSLL
Sbjct: 214 FASEPRSGLTSLL 226


>gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 271

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  E+    + F F+ E+   V+ ++ RYP +   SA+IPLL  AQ Q G W+  AA+ 
Sbjct: 39  HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I+D   I+V E+ATFYT F    VG +  +Q+CGTTPCM+ G E++ +   N +  
Sbjct: 99  KVARIVDAKPIQVYEVATFYTMFNREKVG-KYFIQLCGTTPCMICGSEEIKKTIENHLGI 157

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           K      DG  +  EVEC GAC NAPMV I  D YE+LT E   E++DA
Sbjct: 158 KEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTAETTRELLDA 206


>gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 255

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  VA ++++A IR
Sbjct: 47  WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 106

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +  K      DG  S
Sbjct: 107 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 165

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + +ED+TPE++ EI++    G+     T  
Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 225

Query: 182 PGPQIDRISSAPAGGLTSLL 201
           P     RI   P GG T+LL
Sbjct: 226 P----KRIKCGPEGGNTTLL 241


>gi|255627569|gb|ACU14129.1| unknown [Glycine max]
          Length = 251

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   V E++S YP +  QSA IPLL  AQ+Q G W+  +A++ VA I+++  IR
Sbjct: 43  WEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIR 102

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + E     +  K      DG  S
Sbjct: 103 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFS 161

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + +ED+TPE++ EI++    G+     T  
Sbjct: 162 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIVEKLRKGEKPPHGTQN 221

Query: 182 PGPQIDRISSAPAGGLTSLL 201
           P     RI S P GG T+LL
Sbjct: 222 P----RRIKSGPEGGNTTLL 237


>gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa]
 gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 23/201 (11%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+  +   V E+IS YP +  QSAVIPLL  AQ+Q G W+  +A+  VA ++++A IR
Sbjct: 46  WEFTAANKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIR 105

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     +  K      DG  S
Sbjct: 106 VYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALVKHLGVKRNEVTKDGLFS 164

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182
             E+EC G CVNAPM+ +            + YED+TP+R+ EI++    G+    +P  
Sbjct: 165 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIVEMLRKGE----KPPH 220

Query: 183 ---GPQIDRISSAPAGGLTSL 200
               PQ  R    P GG T+L
Sbjct: 221 GTQNPQ--RTKCGPEGGNTTL 239


>gi|255644244|gb|ACU22686.1| unknown [Glycine max]
          Length = 251

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 113/200 (56%), Gaps = 19/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F+E +   V E++S YP +  QSA IPLL  AQ+Q G W+  +A++ VA I+++  IR
Sbjct: 43  WEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVSAMDAVAKIVEVPPIR 102

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + E     +  K      DG  S
Sbjct: 103 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKHLGVKRNEVTPDGLFS 161

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + +ED+TPE++ EI++    G+     T  
Sbjct: 162 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 221

Query: 182 PGPQIDRISSAPAGGLTSLL 201
           P     RI S P GG T+LL
Sbjct: 222 P----RRIKSGPEGGNTTLL 237


>gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299]
 gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299]
          Length = 249

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 15/197 (7%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYI 73
           S+ F E +   V++++ RYPP+  +SA+IPLL  AQ+  +G++S  A+  VA +L++A I
Sbjct: 18  SWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMNRVAEMLEVAPI 77

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ATFY+ F  + VG + HV VCGTTPCMLRG   + +   + +  K      DG  
Sbjct: 78  RVYEVATFYSMFNRTKVG-KYHVMVCGTTPCMLRGSRDIEKALSDYMGVKKFESTPDGVF 136

Query: 134 SWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +  E+EC G CVNAPM+ +            + YEDLTP     ++ A   GQ    R G
Sbjct: 137 TLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADAVAVVKALKAGQ--KPRVG 194

Query: 184 PQIDRISSAPAGGLTSL 200
            Q  R  + P GG T+L
Sbjct: 195 SQ-HRDKAEPMGGQTTL 210


>gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila]
 gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 274

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 106/175 (60%), Gaps = 6/175 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+ E+   + +++++YP  + +SAV+PLL   QEQ   WV  +A++ +A +L+M  I 
Sbjct: 42  FEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLSAMKKIAKLLEMPEID 101

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT +   PVG + H+Q+CGTTPC L G  ++ +        K  H ++DG  +
Sbjct: 102 VYEVATFYTMYNREPVG-KFHLQICGTTPCQLCGSREITKAIEEYTQTKLGHTSADGKWT 160

Query: 135 WEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            EEVEC GAC NAPM+ +  K  YEDLT E + +++    +G   T + GPQ  R
Sbjct: 161 LEEVECLGACSNAPMIQVNNKWVYEDLTTENVVKLLKDLESG---TDKKGPQNHR 212


>gi|18411985|ref|NP_567244.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
           [Arabidopsis thaliana]
 gi|55584146|sp|O22769|NDUV2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial; Flags: Precursor
 gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis
           thaliana]
          Length = 255

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 19/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  VA ++++A IR
Sbjct: 47  WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIR 106

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +  K      DG  S
Sbjct: 107 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 165

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQ---GDTIR 181
             E+EC G CVNAPM+ +            + +ED+TPE++ EI++    G+     T  
Sbjct: 166 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 225

Query: 182 PGPQIDRISSAPAGGLTSLL 201
           P     RI   P GG  +LL
Sbjct: 226 P----KRIKCGPEGGNKTLL 241


>gi|225437209|ref|XP_002281655.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 23/202 (11%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F++ +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A++ VA ++++A IR
Sbjct: 46  WEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIR 105

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG  ++ +     +  K      DG  S
Sbjct: 106 VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 164

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182
             E+EC G CVNAPM+ +            + YED+TP+R+ EI++    G+    +P  
Sbjct: 165 VGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGE----KPPH 220

Query: 183 ---GPQIDRISSAPAGGLTSLL 201
               PQ  R    P GG T+LL
Sbjct: 221 GTQNPQ--RTRCGPEGGNTTLL 240


>gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium
           tetraurelia strain d4-2]
 gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium
           tetraurelia]
 gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 113/187 (60%), Gaps = 6/187 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S +A++ +A IL++  + 
Sbjct: 36  FDFTDENYKKIEAILTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    K++ K     +DG  +
Sbjct: 96  VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYT 154

Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T + GPQ  R ++  
Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211

Query: 194 AGGLTSL 200
             G T+L
Sbjct: 212 PQGRTTL 218


>gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
 gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 19/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A+  VA ++++A IR
Sbjct: 36  WEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIR 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +  K      DG  S
Sbjct: 96  VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFS 154

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQG---DTIR 181
             E+EC G CVNAPM+ +            + +ED+TPE++ EI++    G+     T  
Sbjct: 155 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQN 214

Query: 182 PGPQIDRISSAPAGGLTSLL 201
           P     RI   P GG  +LL
Sbjct: 215 P----KRIKCGPEGGNKTLL 230


>gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera]
          Length = 243

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 23/202 (11%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           + F++ +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A++ VA ++++A IR
Sbjct: 35  WEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMDAVAKVVEVAPIR 94

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F  + VG + H+ VCGTTPCM+RG  ++ +     +  K      DG  S
Sbjct: 95  VYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFS 153

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRP-- 182
             E+EC G CVNAPM+ +            + YED+TP+R+ EI++    G+    +P  
Sbjct: 154 VGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEMLRRGE----KPPH 209

Query: 183 ---GPQIDRISSAPAGGLTSLL 201
               PQ  R    P GG T+LL
Sbjct: 210 GTQNPQ--RTRCGPEGGNTTLL 229


>gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 114/187 (60%), Gaps = 6/187 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F++E+   +  ++S++P +  +S  IPLLM AQ+Q   ++S +A++ +A IL++  + 
Sbjct: 36  FDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    +++ K    ++DG  +
Sbjct: 96  VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKAIEQQLNIKNGETSADGLFT 154

Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T + GPQ  R ++  
Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211

Query: 194 AGGLTSL 200
             G T+L
Sbjct: 212 PQGRTTL 218


>gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella
           graminicola M1.001]
          Length = 263

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   ++AV+P+L   Q Q G+ S + +  VA +L+M   RV
Sbjct: 55  FKFSKENEAVIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPQRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNSDGTL 133
            E+A+FYT +  +PVG +  +Q C TTPC L G   + +++   + +  K      DG  
Sbjct: 115 YEVASFYTMYNRTPVG-KYFIQACTTTPCQLGGVGSDVIVKAIIDHLGIKQGETTKDGLF 173

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  EVEC GACVNAPMV I  D YEDLTPE   +++DA 
Sbjct: 174 TLLEVECLGACVNAPMVQINDDYYEDLTPETTVQLLDAL 212


>gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 113/187 (60%), Gaps = 6/187 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S +A++ +A IL++  + 
Sbjct: 36  FDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMKKIAKILEIPEMD 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    K++ K     +DG  +
Sbjct: 96  VYETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNIKNGETTADGLYT 154

Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T + GPQ  R ++  
Sbjct: 155 LQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211

Query: 194 AGGLTSL 200
             G T+L
Sbjct: 212 PQGRTTL 218


>gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 166

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 1/159 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FSF+ E+     + I  YP  +  SAV+PLL   QEQ GWV   A+  VA++L + +IRV
Sbjct: 8   FSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHIRV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FYT + L PVG +  ++VC TTPC L   E+++   + K+         D   + 
Sbjct: 68  YEVANFYTMYNLKPVG-KYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLFTL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +EVEC GACVNAP+V I  D YE+LTPE++E II   S 
Sbjct: 127 KEVECFGACVNAPVVQINNDFYENLTPEKVESIIAELSN 165


>gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 278

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 13/203 (6%)

Query: 3   VRRLAEEEFQPSS-----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WV 56
           V +L + +  P +     F F++E+   V +++++YP +  Q+++IPLL  AQ Q G W+
Sbjct: 43  VHQLGQHKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWL 102

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
             AA+E VA I+    ++V E+ATFYT F     G +  +Q+CGTTPCM+ G E + +  
Sbjct: 103 PLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRG-KHFIQLCGTTPCMVCGSEDIKKTI 161

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +++  K     +DG  +  EVEC GAC NAPMV I  D +E LTPE ++E+++    G+
Sbjct: 162 MDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGE 221

Query: 177 GDTIRPGPQIDRISSAPAGGLTS 199
                  P++ R  S P  G  S
Sbjct: 222 ------TPEMGRWGSLPLNGQVS 238


>gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 6/187 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S  A++ +A IL++  + 
Sbjct: 36  FDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLTAMKKIAKILEIPEMD 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E A+FY+ F    VG + H+QVCGTTPC L G   +++    K++ K    ++DG  +
Sbjct: 96  VFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSRDIMKAIEQKLNIKNGETSADGLFT 154

Query: 135 WEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T + GPQ  R ++  
Sbjct: 155 LQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLEDLKNG---TDKKGPQNGRKNAEG 211

Query: 194 AGGLTSL 200
             G T+L
Sbjct: 212 PQGRTTL 218


>gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
 gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
          Length = 161

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 96/154 (62%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76
           FSEE    V E+I+RYP  + +SA+IP+L  AQE   GW+S   ++ VA++L +  I V 
Sbjct: 2   FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F L PVG R   +VC T PCMLRG + +I+  + K+         DG  + +
Sbjct: 62  EVATFYSMFNLQPVG-RYVFEVCQTGPCMLRGSDNIIDYIKKKLDIGVGQTTKDGLFTLK 120

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            VEC GAC  APM+ +GK   E LTPE+++ II+
Sbjct: 121 TVECLGACGYAPMMQLGKHYREHLTPEKVDAIIE 154


>gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 261

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 8/187 (4%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           + F F+EE+   VN+++S+YP +  QS +IPLL  AQ Q G W+  AA++ VA I+  A 
Sbjct: 43  TYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAAMDKVAQIVGAAP 102

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            RV E+A+FYT F  + VG +  +Q+CGTTPCM+ G E + +     +  K      DG 
Sbjct: 103 SRVYEVASFYTMFNRTKVG-KYFIQLCGTTPCMICGSEDIKKTIEKHLGIKNGETTKDGM 161

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            +  EVEC GAC NAPM+ +  D YE L  + + E+++A   G     +P P + +  S 
Sbjct: 162 FTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAG-----KP-PAMGKWGSL 215

Query: 193 PAGGLTS 199
           P  G  S
Sbjct: 216 PMNGQVS 222


>gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum
           S5]
 gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum
           S5]
          Length = 161

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+F+EE+     E++ RYP  +  S  +P L  AQ QEGWVS+ A+E +A  L++    V
Sbjct: 7   FAFNEETERQFQELLKRYPIKK--SLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPVTDV 64

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT + L PVG + H+Q+C T  C LRG E+++     KI   P H  +DG  S 
Sbjct: 65  YEVATFYTMYNLHPVG-KYHIQLCRTLSCDLRGKEEILRHIVGKIGITPGHTTADGRFSL 123

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +VEC G+C + PM+ +  D +E+LTP+R+++I+D  
Sbjct: 124 VQVECLGSCGSGPMMQLNDDYHENLTPQRVDQILDQL 160


>gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis]
          Length = 267

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 7/184 (3%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           + F F+ E+   V+E++ RYP +  QSAV+PLL  AQ Q G ++  AA+  VA IL+M  
Sbjct: 45  TPFDFTAENYRRVHEIMKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMNKVAEILEMPP 104

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           ++V E+ TFYT ++   VG +  +Q CGTTPCML G E++ +    ++  K      DG 
Sbjct: 105 VKVYEVVTFYTMYRTEKVG-KFFIQACGTTPCMLCGSEEIFQTLEKELGIKDGETTKDGM 163

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
            S  +VEC GAC NAPMV I  D YE LTP+   E+++ +   +G      P +++  S 
Sbjct: 164 FSLLKVECLGACANAPMVQINDDYYECLTPKTTVELLN-YIRKEGKL----PPLNKSGSK 218

Query: 193 PAGG 196
           P  G
Sbjct: 219 PMNG 222


>gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus]
 gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus]
          Length = 152

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 86/137 (62%), Gaps = 3/137 (2%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+  K
Sbjct: 4   VAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIK 62

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    +PG
Sbjct: 63  VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPG 120

Query: 184 PQIDRISSAPAGGLTSL 200
           P+  R    PAGGLTSL
Sbjct: 121 PRSGRFCCEPAGGLTSL 137


>gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
 gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
          Length = 163

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 101/154 (65%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
           FSE +   +N++++RYP  + +SA+IP+L  AQE+  GW+    ++ VA +LD+  + V 
Sbjct: 5   FSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLPVEVY 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FYT FQL+PVG    +QVC T PCM++G + +I+  +NK++        DG  + +
Sbjct: 65  EVASFYTMFQLNPVGKYV-LQVCQTGPCMIKGADHIIQHIKNKLNIDIGGTTEDGLFTLQ 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            VEC GAC  APM+ +GK   E LT E+++E+I+
Sbjct: 124 TVECLGACGYAPMMQLGKTYREFLTTEKVDELIE 157


>gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 263

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 110/200 (55%), Gaps = 18/200 (9%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+E+   ++E++ RYPP   + AV+PLL   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 55  FKFSQENLTVIDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISVMNEVARMLEMPPMRV 114

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIHQKPLHRNS-DGT 132
            E+ATFYT +   PVG +  VQ+C T    L GC  +K+++     +        + DG 
Sbjct: 115 YEVATFYTMYNREPVG-KYFVQICTT----LGGCGSDKIVKAITEHLGVSSHGATTPDGI 169

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------TGQGDTIR---P 182
            +  EVEC GACVNAPMV I  D YEDLTPE   +++DA          G    ++   P
Sbjct: 170 FTVLEVECLGACVNAPMVQINDDYYEDLTPETTIQLLDALKASAVAAENGTQSNVKVPPP 229

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GP   R +   + GLTSL +
Sbjct: 230 GPLSGRKTCENSAGLTSLTE 249


>gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae]
 gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+EE+   V  ++  YP +  + A+IPLL  AQ Q+GW+S +A++ VA+++ +  ++ 
Sbjct: 37  FKFTEENKRRVKALLVWYPEAEWKGALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMKA 96

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  ++VC +TPC LRG + +  +C   +  K    + D   + 
Sbjct: 97  YEAAQFYTMFFMKPRG-KYVIRVCTSTPCKLRGGDDIYALCETILKLKHGETSPDMQFTL 155

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           ++  C GACVNAP++ +  D YEDL  + +++I++     + D + P GP+  R SS P 
Sbjct: 156 KDDYCLGACVNAPVLSVNDDFYEDLDEKSVKQILEDL---KNDKLPPSGPRNGRYSSEPK 212

Query: 195 GGLTSL 200
           GGLTSL
Sbjct: 213 GGLTSL 218


>gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 205

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 3/137 (2%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+  K
Sbjct: 57  VAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKLGIK 115

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++IID    GQ     PG
Sbjct: 116 VGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VPPPG 173

Query: 184 PQIDRISSAPAGGLTSL 200
           P+  R S  PAGGLTSL
Sbjct: 174 PRNGRFSCEPAGGLTSL 190


>gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi]
 gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi]
          Length = 260

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 12/198 (6%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           + F FS ES   + +++++YP    QS ++PLL  AQ Q G W+  AAI  +A I ++  
Sbjct: 42  TPFDFSPESYAEIKKILAKYPSKHKQSGILPLLHLAQRQNGGWIPLAAINKIAEICEVNP 101

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V E  +FYT F   PVG + H+QVC TTPCM+ GC+ ++      +  K      DG 
Sbjct: 102 RNVFECVSFYTMFNTQPVG-KYHIQVCITTPCMITGCDNILATLEQHLGIKLGETTQDGL 160

Query: 133 LSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +  E+EC G C NAPM+ +           D +EDLT  R  EII+    G+    + G
Sbjct: 161 FTLGEMECMGCCANAPMIAVSDYSNPPEFKYDYFEDLTAVRAIEIIEMLKKGEYPK-QIG 219

Query: 184 PQIDRISSAPAGGLTSLL 201
            Q  R  + P GG  +LL
Sbjct: 220 SQNGRRYAEPLGGQKTLL 237


>gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406]
 gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406]
          Length = 177

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 4/164 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F FSE S   + E+ +RYP  R +SA++P+L  AQ++  GW+    ++ VA++LD+  I 
Sbjct: 8   FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+A+FY+ + L PVG +   + C T PC L G E+LIE   +K+  K    ++DG  +
Sbjct: 68  VYEVASFYSMYNLKPVG-KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQTSADGRFT 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            + VEC G+C  APM  IG   YE+LT E++++II+ F  GQ D
Sbjct: 127 IKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKIIEVF--GQPD 168


>gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 183

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 2/180 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAA 60
           ++++     +    F F++ES    N+ ++RYP  R  SAV+PLL  AQ+Q  G +  AA
Sbjct: 4   NIQKNCNTRYDIGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A+ LDM  I V E+A FY+ + LS  G +  VQVC TTPC L G E +++ C+  +
Sbjct: 64  MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSENVLKACKEFL 122

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +    +   D   + +EVEC GACVNAP+V I  D YE L  ++++ I+  +   +   I
Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILIEYKKKENTII 182


>gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
 gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
          Length = 245

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 5/192 (2%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           +    F F++E+   V  +++ YP +  Q A++PLL  AQ Q GW+  +A+  VA +L +
Sbjct: 39  YDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKI 98

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             ++  E A +YT F + P G    V VC +TPC LRG + L++ C   +  +P   + D
Sbjct: 99  DPMQAYETAKYYTMFHMKPRGMYV-VAVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKD 157

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRI 189
              S +   C GACVN P+V I  D YEDLT   LE I+     G+   + P GP   R 
Sbjct: 158 MQFSLKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGK---VPPAGPYSGRC 214

Query: 190 SSAPAGGLTSLL 201
           SS P  G T+LL
Sbjct: 215 SSEPKDGATTLL 226


>gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
 gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
          Length = 169

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 2/163 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYI 73
           + +F  ES   V+++I+RYP  R +SA++P+L  AQ E  GW+    ++ VA +L +  I
Sbjct: 4   TIAFKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKPI 63

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFYT F + PVG    ++VC T PCM+ G EK+++  R K++ K      DG  
Sbjct: 64  EVYEVATFYTMFNMKPVGKYV-LEVCRTGPCMVCGSEKILDHIRTKLNIKDGETTEDGMF 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           + +  EC GAC  APM+ +GK  +E+LT E+++EI+D    GQ
Sbjct: 123 TLKPAECLGACGYAPMMQLGKFFHENLTIEKVDEILDLCRQGQ 165


>gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel]
 gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Gardel]
          Length = 183

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAA 60
           ++++     +    F F++ES    N+ ++RYP  R  SAV+PLL  AQ+Q  G +  AA
Sbjct: 4   NIQKNCNTRYDTGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A+ LDM  I V E+A FY+ + LS  G +  VQVC TTPC L G + +++ C+  +
Sbjct: 64  MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDNVLKACKEFL 122

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           +    +   D   + +EVEC GACVNAP+V I  D YE L  ++++ I+
Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNIL 171


>gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba]
 gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba]
          Length = 241

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  +  
Sbjct: 37  FEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 96

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   + 
Sbjct: 97  FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 155

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           +E  C GACVNAP++ +  D YEDL  + L  I+   +  + D + P GP+  R +S P 
Sbjct: 156 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 212

Query: 195 GGLTSL 200
           GGLT+L
Sbjct: 213 GGLTTL 218


>gi|218508847|ref|ZP_03506725.1| NADH dehydrogenase subunit E [Rhizobium etli Brasil 5]
          Length = 249

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 67/87 (77%)

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           ++GTLSWEEV C GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I+PG QIDR
Sbjct: 1   AEGTLSWEEVVCLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASIKPGTQIDR 60

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           I SAP GG TSL     K R + KK D
Sbjct: 61  IFSAPEGGPTSLTTEEPKARTRAKKAD 87


>gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 265

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 120/214 (56%), Gaps = 15/214 (7%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAI 61
           V R   E+    +++F       V+ ++ RYP +  +SA+IPLL  AQ+Q +G ++ A +
Sbjct: 26  VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A++L++A IRV E+ATFY+ F    +G + HV VCGTTPCMLRG  ++ +     + 
Sbjct: 86  NHIADVLEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGSREIEKALEEWMG 144

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
            K     + GT +  E+EC G CVNAPM+ +            + YEDLTP+   ++ +A
Sbjct: 145 VKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEA 204

Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNS 205
              G+  + R G QI R  + P  GLT+L  + S
Sbjct: 205 LKAGK--SPRVGSQI-RDKAEPIKGLTTLTGDPS 235


>gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta]
 gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta]
          Length = 238

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  +  
Sbjct: 34  FEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   + 
Sbjct: 94  FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHGQTTPDMQFTL 152

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           +E  C GACVNAP++ +  D YEDL  + L  I+   +  + D + P GP+  R +S P 
Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLASIL---ADLRNDKLPPAGPRNGRCASEPK 209

Query: 195 GGLTSL 200
           GGLT+L
Sbjct: 210 GGLTTL 215


>gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas]
 gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 181

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MS  +    E    +F F++++    N+ IS+YP  R  SAV+ LL  AQ+Q  G++  +
Sbjct: 1   MSNIQKNSNEHYTETFKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPLS 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A+ L M  I V E+A FY+ + LSP G +  +QVC TTPC L G + +++ C+  
Sbjct: 61  AMNYIADFLGMRLIHVYEVAKFYSMYNLSPTG-KYLIQVCRTTPCWLCGSDDILKSCKEL 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           ++       SD   + +EVEC GACVNAP++ I  D YE LTP+++++I+
Sbjct: 120 LNICVGETTSDNLFTLKEVECLGACVNAPVMQINDDYYEKLTPDKVKDIL 169


>gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster]
 gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster]
 gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster]
 gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct]
          Length = 238

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  +  
Sbjct: 34  FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   + 
Sbjct: 94  FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 152

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           +E  C GACVNAP++ +  D YEDL  + L  I+   +  + D + P GP+  R +S P 
Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 209

Query: 195 GGLTSL 200
           GGLT+L
Sbjct: 210 GGLTTL 215


>gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 260

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+ E+   V  ++++YP +  Q+A+IPLL  AQ Q G W+   A+  VA I ++A +R
Sbjct: 44  FDFTLENYDRVKYIMAKYPNNYKQAAMIPLLDLAQRQHGGWLPLTAMHKVAAICEVAPVR 103

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+A+FYT F  +PVG +  +Q+CGTTPCM+ G E + +     +  K      DG  +
Sbjct: 104 VYEVASFYTMFNRNPVG-KYFIQLCGTTPCMICGSEDIKQTIEKHLGIKNGETTKDGLFT 162

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
             EVEC GAC NAPMV +  D YE LTP+    ++++   G        P + +  S P 
Sbjct: 163 LLEVECLGACANAPMVQLNDDYYECLTPDTTIALLESCKAGN------PPAMGKWGSLPM 216

Query: 195 GGLTS 199
            G  S
Sbjct: 217 NGQVS 221


>gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia]
 gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia]
          Length = 241

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  +  
Sbjct: 37  FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAENIKIDPMEA 96

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   + 
Sbjct: 97  FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 155

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           +E  C GACVNAP++ +  D YEDL  + L  I+   +  + D + P GP+  R +S P 
Sbjct: 156 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLANIL---ADLRNDKLPPAGPRNGRFASEPK 212

Query: 195 GGLTSL 200
           GGLT+L
Sbjct: 213 GGLTTL 218


>gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens]
          Length = 265

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F FS ++ +    ++ +YP +   S +IPLL  AQ Q G W+  AA++ VA  +  A 
Sbjct: 47  TTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLAAMDKVAKYVGCAP 106

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +RV E+ATFYT F    VGT   +Q+CGTTPCM+ G E + +   + +  K    + DG 
Sbjct: 107 MRVYEVATFYTMFNREQVGTY-FIQLCGTTPCMVCGSEAIKKSIEDHLGIKEGETSKDGL 165

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +  EVEC GAC NAPM+ +  D YE LTP+ +  +++A   G+
Sbjct: 166 FTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGE 209


>gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 169

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 98/161 (60%), Gaps = 1/161 (0%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           + ++ +FS E    V  ++ RYP  + +SA++P+L  AQ+  GW+S   ++ VA +LD+ 
Sbjct: 3   ETTNITFSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDIQ 62

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +I V E+ATFYT F L PVG    ++VC T PCML G + +++    K+  +      DG
Sbjct: 63  HIEVYEVATFYTMFHLKPVGKNV-LEVCRTGPCMLVGSDNIVKYLEQKLSIQDGETTPDG 121

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             + + VEC GAC   PM+ +G+  +E L+ ER++++++ F
Sbjct: 122 LFTIKTVECLGACGYGPMMQVGEKYHEFLSEERIDQLLEGF 162


>gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
 gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
          Length = 180

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIR 74
           F FS+E+     + I++YP  R  SAV+ LL  AQ+Q  G++  +AI  +A+ L M  I 
Sbjct: 16  FKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSSAINYIADFLGMQLIH 75

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+A FY+ + LS  G +  VQVC TTPC L G + +++ C+  ++       SD   +
Sbjct: 76  VYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDDVLKSCKELLNIGIGETTSDNLFT 134

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            +EVEC GACVNAP+V I  D YE LTP+++++I+
Sbjct: 135 LKEVECLGACVNAPVVQINDDYYEKLTPDKMKDIL 169


>gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans]
 gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans]
          Length = 238

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 5/186 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  +  
Sbjct: 34  FEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEA 93

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   + 
Sbjct: 94  FEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFTL 152

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQIDRISSAPA 194
           +E  C GACVNAP++ +  D YEDL  + L +I+   +  + D + P GP+  R +  P 
Sbjct: 153 KEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKIL---ADLRNDKLPPAGPRNGRFACEPK 209

Query: 195 GGLTSL 200
           GGLT+L
Sbjct: 210 GGLTTL 215


>gi|90569075|gb|ABD94428.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LIE+C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIEICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 170

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMA 71
           P    F+E     ++  I++YP  + QSAVIP L   Q   EGW++ A ++ +A+ L + 
Sbjct: 9   PKEGLFTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIP 68

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            I V E+ATFYT F+LSPVG +  + VC    CML G EK+++    K++ KP     DG
Sbjct: 69  AISVYEVATFYTMFELSPVG-KHKISVCTNISCMLCGSEKVMQHIEQKLNIKPGQTTEDG 127

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             + +EVEC GACV APM+++ K  +E LT +++++I+D  ++
Sbjct: 128 LFTLKEVECLGACVGAPMMLVDKQYHEFLTEDKIDDILDRLNS 170


>gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 269

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 14/186 (7%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+  +A I ++  + V E  TFY+ F
Sbjct: 64  NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q C TTPCML G ++L+E   + ++ +     SDG ++  E+EC GACV
Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182

Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAG 195
           NAPM+++           D  EDLT E ++ +++   +G+   I  GPQ  DR  + PAG
Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRSGKPFKI--GPQRPDRKYAEPAG 240

Query: 196 GLTSLL 201
           G TSLL
Sbjct: 241 GRTSLL 246


>gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
 gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
 gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
 gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
          Length = 161

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +SF ++ E+ I   E +SRYP  +  S ++P L   QEQEGWVS  A+  VA+ L    I
Sbjct: 2   NSFKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPI 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V E+ATFYT F L P+G + H+++C T  CM+ G ++L +  ++ +  +    ++DG  
Sbjct: 60  QVYEVATFYTMFNLKPIG-KYHIELCKTVSCMVCGAKELKQYIKDVLGLESGQTSADGLF 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           ++ EVECQGAC +APM+ +    +  LT E+LE+II
Sbjct: 119 TFTEVECQGACGDAPMIALNNVYHGKLTKEKLEKII 154


>gi|90569061|gb|ABD94421.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
 gi|90569065|gb|ABD94423.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
 gi|90569081|gb|ABD94431.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|160872029|ref|ZP_02062161.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
           (ndh-1, chain e) [Rickettsiella grylli]
 gi|159120828|gb|EDP46166.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
           (ndh-1, chain e) [Rickettsiella grylli]
          Length = 168

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78
           EE    +++ I +YP +R QSA++  L  AQE  G ++S+  I+ VA+ L M+ +   E+
Sbjct: 13  EELKKAIDKWIQKYPSTRRQSAILQALTIAQEYNGGYLSQYLIDAVADYLAMSRVTAYEV 72

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYT ++L PVG R  + VC    CML GC+K+++  + +++       +D   +  EV
Sbjct: 73  ATFYTLYELKPVG-RHKIGVCTNISCMLSGCDKIVKHLQTRLNINLGETTADKKFTLREV 131

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           EC GAC NAP+V IG   YE LTPE+L++I+D  
Sbjct: 132 ECLGACANAPVVHIGHRYYETLTPEKLDKILDGL 165


>gi|90569063|gb|ABD94422.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI   P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIAGDP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569073|gb|ABD94427.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FALNEGGTLSWEEV 74


>gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ]
 gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ]
          Length = 171

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           SF F++ +     + ISRYP  R  SAV+PLL   Q+Q G +V R+AIE +A +L M  +
Sbjct: 8   SFRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRPV 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+  FY+ +  +PVG +  VQVC TTPC LR  + ++  C+  +  +      D   
Sbjct: 68  HVREVVEFYSMYNTAPVG-KYLVQVCKTTPCWLRRSDDVLNACKRVLCVRVGETTKDNLF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +  EVEC GACVNAP+V I  D YE+L  E +E+I+     G 
Sbjct: 127 TLREVECLGACVNAPVVQINDDYYENLDAESMEKILLKLKEGN 169


>gi|90569071|gb|ABD94426.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI   P
Sbjct: 1   ADMLGMAYVRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIASDP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569067|gb|ABD94424.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
 gi|90569069|gb|ABD94425.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
 gi|90569079|gb|ABD94430.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|126680935|gb|ABO26551.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
          Length = 74

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIMICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|126680955|gb|ABO26552.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
          Length = 74

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYIRVIEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569077|gb|ABD94429.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYMRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|157867454|ref|XP_001682281.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major
           strain Friedlin]
 gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
          Length = 273

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 15/200 (7%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
           P  F+ S    I  NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+  +A I ++ 
Sbjct: 51  PWDFTTSSYEKIH-NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVP 109

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            + V E  TFY+ F   PVG + H+Q C TTPCML G ++L+E   + ++ +     SDG
Sbjct: 110 PMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDG 168

Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++  E+EC GACVNAPM+++           D  EDLT E ++ +++    G+   I  
Sbjct: 169 LITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRGGKPFKI-- 226

Query: 183 GPQ-IDRISSAPAGGLTSLL 201
           G Q +DR  + PAGG TSLL
Sbjct: 227 GSQRLDRRYAEPAGGRTSLL 246


>gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus]
          Length = 211

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 48  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             K      D   +  EVEC GACVNAPMV I  + Y
Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYY 203


>gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 217

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 15/198 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
           +SF E +   V+E+++RYP +  +SA+IPLL  AQ Q  G +S + +  VA I ++A IR
Sbjct: 13  WSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMNHVAEICEVAPIR 72

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFY+ F    +G + HV VCGTTPCMLRG   +       +  +      DG  +
Sbjct: 73  VYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGARDIERALSEYMGVEKFETTKDGMFT 131

Query: 135 WEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             E+EC G CVNAPM+ +            + YEDLTP+    + +    G+  + R G 
Sbjct: 132 LGEMECMGCCVNAPMIAVADYRAGVEGYSYNYYEDLTPQSAVRVCEELKAGK--SPRVGS 189

Query: 185 QIDRISSAPAGGLTSLLD 202
           Q  R  + P  G T+LL+
Sbjct: 190 QT-RDKAEPLPGQTTLLE 206


>gi|154335106|ref|XP_001563793.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 274

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 14/186 (7%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +E++ ++P  R  SA IPLL  AQ+Q+G ++   A+  +A I ++  + V E  TFY+ F
Sbjct: 64  HEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q C TTPCML G ++LIE   + ++ +     SDG ++  E+EC GACV
Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELIERTMHYLNVRMHGTTSDGLITVGEMECLGACV 182

Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAG 195
           NAPM+++           D  EDLT + ++ +++    G+   I  GPQ  DR  + PAG
Sbjct: 183 NAPMLVVSDYSNPPNFSYDYVEDLTWDSIKTLVEDLRGGKPFKI--GPQRPDRRCAEPAG 240

Query: 196 GLTSLL 201
           G TSLL
Sbjct: 241 GRTSLL 246


>gi|222475163|ref|YP_002563579.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
           Florida]
 gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico]
 gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia]
 gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
           Florida]
          Length = 169

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+ E+     + IS YP  R  SAV+PLL   Q Q G ++ ++AI  +A++L M  + 
Sbjct: 8   FEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRPVH 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +         D   +
Sbjct: 68  VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             EVEC GACVNAP+V I +D YEDL  E++ EI+
Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161


>gi|322498104|emb|CBZ33179.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 273

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 18/188 (9%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+  +A I ++  + V E  TFY+ F
Sbjct: 64  NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q C TTPCML G ++L+E   + ++ +     SDG ++  E+EC GACV
Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182

Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRISSAP 193
           NAPM+++           D  EDLT E ++ ++++   G+   I   RP    DR  + P
Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVESLRGGKPFKIGSQRP----DRRYAEP 238

Query: 194 AGGLTSLL 201
           AGG TSLL
Sbjct: 239 AGGRTSLL 246


>gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries]
 gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
 gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries]
 gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
          Length = 169

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+ E+     + IS YP  R  SAV+PLL   Q Q G ++ ++AI  +A++L M  + 
Sbjct: 8   FEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRPVH 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +         D   +
Sbjct: 68  VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             EVEC GACVNAP+V I +D YEDL  E++ EI+
Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161


>gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi]
          Length = 169

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F F+ E+     + IS YP  R  SAV+PLL   Q Q G ++ ++AI  +A++L M  + 
Sbjct: 8   FEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLLGMRPVH 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +         D   +
Sbjct: 68  VREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNLFT 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             EVEC GACVNAP+V I +D YEDL  E++ EI+
Sbjct: 127 LREVECLGACVNAPVVQINEDYYEDLDSEKMGEIL 161


>gi|312890392|ref|ZP_07749929.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
 gi|311297162|gb|EFQ74294.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
          Length = 174

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S  FSE+     N+V+SRYP  + +S ++P+L   Q + GWVS  A++ VA  L + +I
Sbjct: 9   TSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVAEYLGIQHI 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+A+FY+ + L P G +  ++VC T PC L G EK+++    K+  K      DG  
Sbjct: 69  EVYEVASFYSMYLLRPQG-KYLLEVCRTGPCCLVGAEKIMDYIEQKLGVKEGEVTPDGLF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169
           SW  VEC  AC  AP++ IG +   YE+LTPE++++++
Sbjct: 128 SWRGVECLAACGFAPVLQIGPEYTFYENLTPEKVDKLV 165


>gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer DSM 15868]
 gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer DSM 15868]
 gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer
           RA-YM]
 gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-GD]
          Length = 170

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAY 72
           +  +F  E+   V+++I+RYP  + +SA+IP+L  AQ E  GW+S   ++ VA +L++  
Sbjct: 4   TVIAFKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILP 63

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFYT F + PVG    ++VC T PCML G + +++  R  ++ K      DG 
Sbjct: 64  IEVYEVATFYTMFNMKPVGKYV-LEVCRTGPCMLNGSDDILDHIRKTLNIKDGETTEDGL 122

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            + +  EC GAC  APM+ +GK  +E LT E+++EI++    G
Sbjct: 123 FTLKPAECLGACGYAPMMQLGKFYHEHLTKEKVDEILELCRQG 165


>gi|146083233|ref|XP_001464685.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum
           JPCM5]
 gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
          Length = 273

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 108/188 (57%), Gaps = 18/188 (9%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+  +A I ++  + V E  TFY+ F
Sbjct: 64  NEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAMYKIAKICEVPPMHVFETVTFYSMF 123

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q C TTPCML G ++L+E   + ++ +     SDG ++  E+EC GACV
Sbjct: 124 NRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLNVRMHGTTSDGLITIGEMECLGACV 182

Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTI---RPGPQIDRISSAP 193
           NAPM+++           D  EDLT E ++ +++    G+   I   RP    DR  + P
Sbjct: 183 NAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENLRGGKPFKIGSQRP----DRRYAEP 238

Query: 194 AGGLTSLL 201
           AGG TSLL
Sbjct: 239 AGGRTSLL 246


>gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 15/200 (7%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
           P  FS +    I  N ++ ++P SR +SAVIPLL  AQ Q+G ++   A+  +A I ++ 
Sbjct: 39  PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 97

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L++     ++ K      DG
Sbjct: 98  PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVQRTEAYLNVKMHGTTKDG 156

Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++  E+EC GACVNAPM+++           D  EDLT + ++++I+     +G   + 
Sbjct: 157 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 214

Query: 183 GPQ-IDRISSAPAGGLTSLL 201
           G Q  DR  + PAGG TS+ 
Sbjct: 215 GTQRSDRKWADPAGGRTSIF 234


>gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 284

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 104/227 (45%), Gaps = 56/227 (24%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ ++   + EV+SRYP    ++AV+PLL   Q Q G+ S + +  VA IL+M  +RV
Sbjct: 56  FKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISVMNEVARILEMPPMRV 115

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT +   PVG + HVQVC T       CE ++ V   +          DG  ++
Sbjct: 116 YEVATFYTMYNRDPVG-KFHVQVCTTA------CEDVLGVHHGET-------TPDGLFTF 161

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----------------------- 172
            EVEC GAC NAPMV I  D YEDLT +    ++ A                        
Sbjct: 162 SEVECLGACANAPMVQINDDYYEDLTYDSTVNLLKALKHAAQATGAQPGDKGLASGAGKG 221

Query: 173 ---STGQGDTI----------------RPGPQIDRISSAPAGGLTSL 200
                G GD +                 PGP   R S  PAGGLT L
Sbjct: 222 TATGEGAGDAVANAQARQYEAGGVKVPSPGPLSGRASCEPAGGLTCL 268


>gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
 gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
          Length = 169

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 2/156 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYI 73
           + +F  E+   V ++I RYP  + +SA+IP+L  AQ E  GW+    ++ VA++L +  I
Sbjct: 4   TIAFQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKPI 63

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFYT F + PVG    ++VC T PCML G + +++  R  ++ K     +DG  
Sbjct: 64  EVYEVATFYTMFNMKPVGKYV-LEVCQTGPCMLSGSDGILQHIRETLNIKNGETTADGLF 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + ++ EC GAC  APM+ +GK  +E LT E+++EI+
Sbjct: 123 TLKQAECLGACGYAPMMQLGKFYHEHLTNEKVDEIL 158


>gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
           P  FS +    I  N ++ ++P SR +SAVIPLL  AQ Q+G ++   A+  +A I ++ 
Sbjct: 39  PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 97

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L+      ++ K      DG
Sbjct: 98  PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTKDG 156

Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++  E+EC GACVNAPM+++           D  EDLT + ++++I+     +G   + 
Sbjct: 157 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 214

Query: 183 GPQ-IDRISSAPAGGLTSLL 201
           G Q  DR  + PAGG TS+ 
Sbjct: 215 GTQRSDRKWADPAGGRTSIF 234


>gi|322828601|gb|EFZ32337.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 257

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
           P  FS +    I  N ++ ++P SR +SAVIPLL  AQ Q+G ++   A+  +A I ++ 
Sbjct: 35  PWDFSIASYEEI-NNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAMYKIARICEVP 93

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L+      ++ K      DG
Sbjct: 94  PMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTKDG 152

Query: 132 TLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++  E+EC GACVNAPM+++           D  EDLT + ++++I+     +G   + 
Sbjct: 153 LITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENLR--EGRPFKV 210

Query: 183 GPQ-IDRISSAPAGGLTSLL 201
           G Q  DR  + PAGG TS+ 
Sbjct: 211 GTQRSDRKWADPAGGRTSIF 230


>gi|288942130|ref|YP_003444370.1| NADH-quinone oxidoreductase subunit E [Allochromatium vinosum DSM
           180]
 gi|288897502|gb|ADC63338.1| NADH-quinone oxidoreductase, E subunit [Allochromatium vinosum DSM
           180]
          Length = 175

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 92/156 (58%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           FS E    ++  I++YPP   QSAV+P L   Q+  G W++   ++ VA  LDM  + V 
Sbjct: 20  FSPEIREAIDAHIAKYPPEWKQSAVMPALSIVQDANGGWLTTELMDDVAAYLDMPAVSVY 79

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY  + L+P G R  V VC +  CML G E+LIE   +K   K     SDG  + +
Sbjct: 80  EVATFYGMYDLTPQG-RHKVCVCNSISCMLNGSEELIEHVEHKYGVKVGETTSDGRFTLK 138

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           EVEC GAC +AP V++ K  +E LTPE L+++ID  
Sbjct: 139 EVECLGACRDAPAVLLDKVYHEKLTPESLDKLIDGL 174


>gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
           18053]
          Length = 165

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 1/161 (0%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P+  +F+ E    V E+I+RYP  R +SA++P+L  AQEQ GW+S   ++ VA IL++  
Sbjct: 5   PNLVAFTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIEP 64

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+ATFYT + L PVG    ++ C T PC L G E +    + K+  +     +DG 
Sbjct: 65  VEVYEVATFYTMYHLDPVGKHV-IEYCRTGPCCLMGGEDVYGHLKKKLGIEAGETTADGK 123

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + +EVEC  AC   P+  I +  Y +LT E++++II+  S
Sbjct: 124 FTLKEVECLAACGWGPVFQIREQFYMNLTNEKVDQIIEDLS 164


>gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 157

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 88/157 (56%), Gaps = 9/157 (5%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC--EKLIEVCRNKIH 121
           VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   +  + 
Sbjct: 4   VAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKKTLG 62

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+    +
Sbjct: 63  IEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGKKP--K 120

Query: 182 PGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PGPQ     R +S P GGLTS L+   K  G K + D
Sbjct: 121 PGPQSGQGGRFASEPKGGLTS-LNTEPKGPGFKVRSD 156


>gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
           TREU927]
 gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei]
 gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 273

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 111/200 (55%), Gaps = 12/200 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           N ++ ++P SR +SA+IPLL  AQ Q+G ++   A+  +A I ++  ++V E  TFY+ F
Sbjct: 62  NVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAMYKIARICEVPPMQVFETVTFYSMF 121

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q C TTPCML GC++L+      ++ K      DG ++  E++C GACV
Sbjct: 122 NRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLNVKMHGTTRDGLITLGEMQCLGACV 180

Query: 146 NAPMVMIGK---------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
           NAPM+++           D  EDLT + ++E+I+    G+   +    + DR  S PAGG
Sbjct: 181 NAPMLVVSDYSRPPHFSYDFVEDLTWDSVKELIENLREGRPFKVGTCRE-DRRWSEPAGG 239

Query: 197 LTSLLDNNSKKRGKKKKDDK 216
            TS+      K   +  D K
Sbjct: 240 RTSIFMKEPPKPYCRDLDAK 259


>gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM
           2366]
 gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM
           2366]
          Length = 170

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  EE QP  FS +  +    +E++ RYP  + +SA++P+L   Q + GW+S AA++ VA
Sbjct: 2   LKVEEQQPVEFSPALLTKF--DEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             LD+  I V E+A+FY+ + L P G    ++VC T PC L G EKL+    NK+  K  
Sbjct: 60  AYLDIQDIEVYEVASFYSMYFLKPQGKYV-LEVCRTGPCCLVGAEKLMGHIENKLGVKEN 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170
              +DG  SW  VEC  AC   P++ IG +   YE+L  ++++E+I+
Sbjct: 119 EVTADGLFSWRGVECLAACGYGPVLQIGPEYTFYENLNEQKVDELIE 165


>gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 171

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 5/167 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +E QP    FS E      EV+SRYP  + +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LSVKESQP--VEFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           + LD+  I V E+ATFYT + L P G    ++VC T PC L G EK++    N++  K  
Sbjct: 60  HYLDIQPIEVYEVATFYTMYFLEPKGKYV-LEVCRTGPCCLVGAEKIMTHIENRLGVKEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170
               DG  SW  VEC  AC   P++ IG D   YE+LT E ++++I+
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPDYTFYENLTEESVDKLIN 165


>gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132]
 gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132]
          Length = 161

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 1/159 (0%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           + +F+E++     E+I+RYP  R +SA++PLL  AQEQ GWVS A ++ +A IL +  + 
Sbjct: 3   NIAFTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPVE 62

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ATFYT F L PVG    ++ C T PC   G E++ +  + ++        SDG  +
Sbjct: 63  VYEVATFYTMFHLEPVGKHV-IEYCRTGPCCTVGGEEVYDHLKERLGIASNQTTSDGLFT 121

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +EVEC  AC   P   I +  +  L   ++++IID  S
Sbjct: 122 LKEVECLAACGWGPCFQIKEKFFMQLDKAKVDQIIDELS 160


>gi|225871981|ref|YP_002753435.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792810|gb|ACO32900.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 166

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 93/155 (60%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E A   + +++ YP  R  SA+IP+L+ AQ++ G++S A +  VA  + +A + V  
Sbjct: 9   FSPELAARFDRLVTLYPVKR--SALIPMLLYAQDEVGYISDAVVAEVAERIGIAELDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  PVG + HVQVC    CMLRG  +L+  C  ++        +DG  S EE
Sbjct: 67  VVSYYSLMRTKPVG-KYHVQVCTNIACMLRGGNELLHHCSKRLGIGNKQTTADGVFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VEC GAC  AP V +  D +E+LTPE +++++D +
Sbjct: 126 VECIGACSWAPAVQVNYDFHENLTPELMDKVLDEY 160


>gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 171

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +E QP    FS E      EV+SRYP  + +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LSVKESQP--VEFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           + LD+  I V E+ATFYT + L P G    ++VC T PC L G EK+++   N++  K  
Sbjct: 60  HYLDIQPIEVYEVATFYTMYFLEPKGKYV-LEVCRTGPCCLVGAEKIMDHIENRLGVKEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIID 170
               DG  SW  VEC  AC   P++ IG +   YE+LT E ++++I+
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPEYTFYENLTVESVDQLIN 165


>gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 163

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE+S   +    ++YP  + +S ++  L  AQE+ G++S A +E +A +L +  I+V E
Sbjct: 2   LSEKSLAEIARERAKYPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            ATFY+ + L PVG R  + VCG+  C L G + +++    ++   P    +DG  + +E
Sbjct: 62  AATFYSMYDLQPVG-RHKLCVCGSVSCFLNGSDAILQHLSERLGVSPGETTADGLFTLQE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC +APM+ +G   YE+LT E L+ ++ A   G+ D +R
Sbjct: 121 VECLGACKDAPMLQVGDHYYENLTQESLDALL-AKLRGESDDVR 163


>gi|218672651|ref|ZP_03522320.1| NADH dehydrogenase subunit E [Rhizobium etli GR56]
          Length = 62

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/62 (79%), Positives = 54/62 (87%)

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KIH  P  
Sbjct: 1   MLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKIHAHPFE 60

Query: 127 RN 128
           RN
Sbjct: 61  RN 62


>gi|322436007|ref|YP_004218219.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX9]
 gi|321163734|gb|ADW69439.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX9]
          Length = 169

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E A   + +I+ YP  R  SA++P+L+ AQ++ G+VS  AI+ +A  LD+  + V  
Sbjct: 9   FSPEMAAKFDHLITIYPLKR--SALVPMLLYAQDELGFVSEPAIKEIAQRLDLFDLDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CMLRG  ++++ C+ K+         DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGYEILDHCKAKLGIGHKQTTPDGQFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP + +  D ++DLT  ++++I+  ++ G+G  ++
Sbjct: 126 VECIGACCWAPAMQVNYDFHDDLTTVKVDDILAEYAAGRGKDVK 169


>gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
 gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
          Length = 174

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  EE QP    FS E     +E++ RYP  + +SA++P+L   Q   GW+S +A++ VA
Sbjct: 2   LKVEETQP--VEFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L ++ I V E+ATFYT + L P G +  ++VC T PC L G EKL+     K+  +  
Sbjct: 60  EYLKISPIEVYEVATFYTMYFLKPQG-KFTLEVCRTGPCCLVGAEKLLNYIGEKLGVEEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDT 179
               DG  S+  VEC  AC   P++ IG +   YE+LT E ++++ID      G +
Sbjct: 119 EITPDGLFSYRGVECLAACGFGPVLQIGPEYTFYENLTIESVDKLIDDLKAKAGKS 174


>gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 149

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  ++      F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 9   LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 68

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L M  +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E +  V   K+
Sbjct: 69  MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 127

Query: 121 HQKPLHRNSDGTLSWEEVECQG 142
              P   + DG  +   VEC G
Sbjct: 128 GIGPGETSKDGLFTLSVVECLG 149


>gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
 gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
          Length = 178

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
           FS E  + V   I+ +P  + +SA++ +L  A+E+  GW+S   +  VA +L++  I V 
Sbjct: 17  FSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVPTMNYVAGLLNIQPIEVY 76

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFYT F +   G +  ++VC T PCML G +++IE   NK+  K    ++DG  + +
Sbjct: 77  EVATFYTMFNIEKPG-KVVLEVCRTGPCMLVGSDQIIEHIENKLDIKVGQTSADGMFTLK 135

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             EC GAC   PM+  GK  +E LTP +++E++D  
Sbjct: 136 TAECLGACGYGPMLQCGKHYHEHLTPAKVDELLDTL 171


>gi|256821519|ref|YP_003145482.1| NADH-quinone oxidoreductase subunit E [Kangiella koreensis DSM
           16069]
 gi|256795058|gb|ACV25714.1| NADH-quinone oxidoreductase, E subunit [Kangiella koreensis DSM
           16069]
          Length = 164

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 1/152 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  IS+YP  R +SA+IP+L   QE+ G +SR A++  A+ L++ +I   E
Sbjct: 10  LSAESIEKIDLWISKYPTERKRSAIIPVLTIVQEELGHLSREAMDASADYLEIPHIAAYE 69

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+ F+L P G    V +C    CM+ G E L +  ++++  +P   + DG +S +E
Sbjct: 70  VATFYSMFRLEPGGKHV-VSLCTNVSCMMAGSEALKKWFKDELGIEPGQTSKDGRISLKE 128

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           VEC  AC  APM+ + K  +E+LT E++ ++I
Sbjct: 129 VECMAACGGAPMLEVDKQYHENLTVEKMADLI 160


>gi|254496125|ref|ZP_05109024.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
 gi|254354666|gb|EET13302.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
          Length = 167

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 88/147 (59%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  I++YP  + QSAV+  L   QE+   ++   ++ +A+ L+M  I V E+A+FYT +
Sbjct: 21  IDHWIAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT   V VC    CMLR    +++  + K+  K      DG  +   VEC GACV
Sbjct: 81  EHKPVGTHL-VNVCTNISCMLRDSAGVVDHLQKKLGIKLGETTDDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LTPE ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTPESIDKVLEQY 166


>gi|153872952|ref|ZP_02001700.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
 gi|152070587|gb|EDN68305.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
          Length = 171

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           +S   SEES   ++  I++YP  + QS V+  L   Q+  G W++   ++ VA+ LDM  
Sbjct: 10  ASTLLSEESRAAIDRWIAKYPSDQKQSTVMAALSIVQDANGGWLTTELMDAVADYLDMQP 69

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFY+ ++L PVG +  + +C    CMLRG E ++     K+  K      D  
Sbjct: 70  IAVYEVATFYSMYELKPVG-QNKLCICTNVSCMLRGSEDIVAHLEQKLGIKLGETTPDKK 128

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            + +EVEC GAC  APM+ +G++ +E+LT E++++I+
Sbjct: 129 FTLKEVECLGACGGAPMMQVGREYHENLTSEKVDDIL 165


>gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 159

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 9/160 (5%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           S+ FSE S     +++  +P  R  S V+P L   Q + G+V +  +  +A  L   ++ 
Sbjct: 2   SYKFSEASEKRFRKMLEVFPDKR--SLVLPCLYILQRENGFVDQDGMAYIAERLGDPISL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130
            +V  +ATFYT +   PVG + H+Q+CGT+ C L G +++ E +C R  IH       SD
Sbjct: 60  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLLGSDEIEEHICKRLGIHMG--QTTSD 116

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           G  + EEVEC GAC  APMV IG D YE LTPE+++ I+D
Sbjct: 117 GKFTLEEVECLGACGYAPMVQIGDDFYEQLTPEKVDRILD 156


>gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
 gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
          Length = 166

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++ +F+ E      E+I+RYP  + +SA++PLL   QEQEGW S   ++ VA +LD+  I
Sbjct: 7   NTVTFTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPI 66

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+A+FYT + L+PVG    ++ C T PC L G E +    + ++         DG  
Sbjct: 67  EVYEVASFYTMYHLNPVGKHV-IEYCRTGPCCLMGGEDVYAHLKQRLGIDTGQTTVDGQF 125

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + +EVEC  AC   P+  I +  Y  LT ER++EIID  S
Sbjct: 126 TLKEVECLAACGMGPVFQIREKYYMHLTNERVDEIIDELS 165


>gi|299138538|ref|ZP_07031717.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599784|gb|EFI55943.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 169

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+A   +++ + YP  R  SA+IP+L+ AQ++ G+VS   +  +A  LD+  + V  
Sbjct: 9   FSPETAARFDKLATIYPVKR--SALIPMLLYAQDEVGYVSDEVVAELAKRLDLLELDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CMLRG  +L++ C++ +         DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGFELLDHCKHTLGIGHKGVTPDGLFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP V +  D ++DLTP +++ ++  +  G+G  ++
Sbjct: 126 VECIGACCWAPAVQVNYDFHDDLTPAKMDAVLADYREGRGKDVK 169


>gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
 gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
          Length = 170

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 9/168 (5%)

Query: 6   LAEEEFQPSSFS--FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           L  EE QP +FS    E+ A    E++SRYP  + +SA++P+L   Q + GW+S  A++ 
Sbjct: 2   LKVEEQQPVAFSAALLEKCA----EIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDK 57

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA  L++  I V E+A+FYT + L P G +  +++C T PC L G EKL++     +  K
Sbjct: 58  VAEYLNIQPIEVYEVASFYTMYFLKPQG-KYMLEICRTGPCCLVGAEKLMDHLEQTLGVK 116

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169
                 DG  SW  VEC  AC   P++ IG +   YE+L  ++L+++I
Sbjct: 117 EGEVTPDGLFSWRGVECLAACGYGPVLQIGPEYTFYENLDKQKLDDLI 164


>gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 168

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++ + RYP  + QSAV+  L   Q + G++S   ++ VA  + M  I V E+A+FY+ F
Sbjct: 21  IDDWLRRYPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYEVASFYSMF 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGAC 144
           +L PVG R  + VC    CMLRG ++++E   NK+  K      DG    + E EC  AC
Sbjct: 81  ELKPVG-RHTIAVCTNISCMLRGSDRIVEHIENKLGIKTGESTPDGKFYIKREEECLAAC 139

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             APM+ +    YE LTPER++EI+D  
Sbjct: 140 CGAPMMQVDHVYYEHLTPERVDEILDGL 167


>gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           331]
 gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           331]
          Length = 174

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70
           Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L +
Sbjct: 4   QTEQFILDEAVIKEIDRWLAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        SD
Sbjct: 64  PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170
           G  + + VEC  AC  APM  I    Y E+LTPE++  IID
Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163


>gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           334]
 gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
 gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           334]
 gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
          Length = 174

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70
           Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L +
Sbjct: 4   QTEQFILDEAVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        SD
Sbjct: 64  PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170
           G  + + VEC  AC  APM  I    Y E+LTPE++  IID
Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163


>gi|320449686|ref|YP_004201782.1| NADH-quinone oxidoreductase subunit E [Thermus scotoductus SA-01]
 gi|320149855|gb|ADW21233.1| NADH-quinone oxidoreductase, subunit E [Thermus scotoductus SA-01]
          Length = 181

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F ++   ++ E  ++YPP   +SA++PLL R Q++EGW+    IE +A ++      V+
Sbjct: 2   GFFDDKQDFLEETFAKYPPEGRRSAIMPLLRRVQQEEGWIRPERIEEIAQLVGTTATEVM 61

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +A+FY+ +Q  P G R H+QVC T  C L G ++L +     +   P     DG  S +
Sbjct: 62  GVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTETLGIGPGEVTPDGLFSVQ 120

Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           +VEC G+C  AP+V +  + Y E +T  RLE +++    G+
Sbjct: 121 KVECLGSCHTAPVVQVNDEPYVECVTRARLEALLEGLKAGK 161


>gi|52842983|ref|YP_096782.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 167

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LT E ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166


>gi|289207897|ref|YP_003459963.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943528|gb|ADC71227.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 176

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 2/144 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           ++RYP  + +SAV+  L   Q ++G++S A ++ VA  L +  I V E+ +FY+ ++L P
Sbjct: 32  LARYPEDQKRSAVLGALRAVQHEDGYLSTAKMDAVAEYLGLPAIAVYEVGSFYSMYELEP 91

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGACVNAP 148
           VG    + VC    CMLRG E++IE   N++  K      DG    + E EC  AC  AP
Sbjct: 92  VGKHT-IMVCNNISCMLRGSEQIIEHLENRLGIKLGESTPDGKFYLKMEEECLAACCGAP 150

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
           M+ +    YE+LTPE+++EI+D  
Sbjct: 151 MMQVDHVYYENLTPEKVDEILDGL 174


>gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b]
          Length = 167

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LT E ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166


>gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby]
 gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
 gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby]
 gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
          Length = 167

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LT E ++++++ +
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQY 166


>gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 170

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   V+ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  H+QVC TTPC LRG ++++ VC+ K+
Sbjct: 90  MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148

Query: 121 HQKPLHRNSDGTLSWEE 137
              P     DG  +  E
Sbjct: 149 GISPGETTKDGKFTISE 165


>gi|29654735|ref|NP_820427.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           493]
 gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493]
          Length = 174

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDM 70
           Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L +
Sbjct: 4   QTEQFILDEVVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQL 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        SD
Sbjct: 64  PRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETTSD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIID 170
           G  + + VEC  AC  APM  I    Y E+LTPE++  IID
Sbjct: 123 GLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIID 163


>gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
 gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
          Length = 167

 Score =  107 bits (268), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  I++YP  + QSAV+  L  AQE+ G+++   ++ +A+ LDM  I V E+A+FYT +
Sbjct: 21  IDHWIAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +   VG R  + VC    CML     +++    K+  K      DG  +   VEC GACV
Sbjct: 81  EHKQVG-RHLINVCTNISCMLCDSAAVVKHLEKKLDIKLGETTDDGRFTLRAVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E LTPE ++++++ +
Sbjct: 140 NAPMMQVNKDYHEKLTPESIDKVLEQY 166


>gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
 gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
          Length = 155

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 9   IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 69  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LT E ++++++ +
Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQY 154


>gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira
           defluvii]
 gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira
           defluvii]
          Length = 178

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++++SRYP  R  SA++PLL  AQ ++G+++ AA++ +A +L +   +V E ATFYT  
Sbjct: 10  IDDILSRYPVKR--SALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYETATFYTML 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L PVG + H+QVC +  C L G + +I     K+  KP     D   +   VEC  AC 
Sbjct: 68  NLKPVG-KFHLQVCKSLMCALVGSDTVIGWISAKLGIKPGETTPDRLFTLSIVECLAACG 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             PM+ +  D YE LT E+L+ I+         +++ GP
Sbjct: 127 TGPMMQVNDDYYERLTEEKLDRILADLRQTGTCSLKTGP 165


>gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
 gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
          Length = 155

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 9   IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 69  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
           NAPM+ + KD +E+LT E ++++++ +
Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQY 154


>gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
           7299]
 gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 158

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F +++E+         +YP  +  + ++P L   QEQEGWVS  A+  VA+ +    I
Sbjct: 2   AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E ATFYT F L P+GT  H+++C T  CML G   L +  ++ I  +P   ++DG  
Sbjct: 60  EVYEFATFYTMFNLKPIGTY-HIELCKTLSCMLMGANNLKKFIKDTIGIEPGQTSADGKF 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              EVEC GAC  APM  +    +E+ T E L+ +I+
Sbjct: 119 HLSEVECLGACGGAPMFALNGQYHENQTVESLKNLIE 155


>gi|294056099|ref|YP_003549757.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615432|gb|ADE55587.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 166

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +   E+   +++++ RYP  R  SA +PL    QE +G++S  AIE +A  L++  I +
Sbjct: 1   MNLKPETIEKIDKLVPRYPVMR--SAALPLCHLVQEDQGYLSPEAIEWIAERLELQPINI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           LEI TFY   +  P G + HV+VC T PC L G  +       +++ K  H + DG ++ 
Sbjct: 59  LEIVTFYPMLRTEPTG-KYHVRVCRTLPCALSGAYQTCARLEEELNVKVGHTSEDGLVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           E VEC   C  AP+VM+G+D Y D+ P++  E+     +G+
Sbjct: 118 EYVECHADCGRAPVVMVGEDEYTDIDPDKAAELAAQMKSGE 158


>gi|320107664|ref|YP_004183254.1| NADH-quinone oxidoreductase subunit E [Terriglobus saanensis
           SP1PR4]
 gi|319926185|gb|ADV83260.1| NADH-quinone oxidoreductase, E subunit [Terriglobus saanensis
           SP1PR4]
          Length = 169

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+A   + +++ YP  R  SA++P+L+ AQ+  G+VS A +  +A  LD+  + V  
Sbjct: 9   FSPETAARFDHLVTIYPVRR--SALVPMLLYAQDDIGYVSDAVVAEIAQRLDLLELDVRG 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CML G   L++ C+ K+        +DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLVGGYDLLDHCKAKLGIGHKGVTADGLFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP + +  D +E++T  +++ I++ ++ G+G  ++
Sbjct: 126 VECIGACCWAPAIQVNYDFHENVTNIKMDAILEDYAAGRGKDVK 169


>gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
 gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
          Length = 170

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 3/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E++ RYP  R +SA++P+L   Q + GW+S  A++ VA  L +  I V E+ATFYT F 
Sbjct: 21  DEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVAAYLRIEPIEVYEVATFYTMFF 80

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G    ++VC T PC L G E++++   N++  K      DG  SW  +EC  AC  
Sbjct: 81  LQPQGKYV-LEVCRTGPCCLVGAERIMKHIENRLGVKENEVTPDGLFSWRGIECVAACGM 139

Query: 147 APMVMIG--KDTYEDLTPERLEEIID 170
            P++ IG     YE+LT E ++++I+
Sbjct: 140 GPVLQIGPTYTYYENLTEESVDQLIE 165


>gi|300113269|ref|YP_003759844.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
           C-113]
 gi|299539206|gb|ADJ27523.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
           C-113]
          Length = 174

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 89/148 (60%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           +++ I++YPP + QSA+IP L   Q   G +++   ++ VA  L+M  I V E+ATFY+ 
Sbjct: 27  IDDWIAKYPPEQKQSAIIPALHIVQAANGGYLTDKLLDAVAEYLEMRPISVYEVATFYSM 86

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++L P+G R  + VC    C LRG ++++   R ++         D   + +E EC GAC
Sbjct: 87  YELKPIG-RHKISVCTNISCQLRGSDEVVAHLRKRLGIGFGETTPDHRFTVKEAECLGAC 145

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             APM+M G+  +E+LTP ++++I++A 
Sbjct: 146 GGAPMMMAGRTYHENLTPAKIDQILEAL 173


>gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 159

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 9/160 (5%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
            + FSE S     +++  +P  R  S ++P L   Q + G+V +  +  +A  +   ++ 
Sbjct: 2   GYKFSETSEKRFQKMLKAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130
            +V  +ATFYT +   PVG + H+Q+CGT+ C LRG +++ E +C R  IH       SD
Sbjct: 60  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTG--QTTSD 116

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              + EEVEC GAC  APMV I  D YE LTPE++++I+D
Sbjct: 117 QKFTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILD 156


>gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 161

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 9/160 (5%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
            + FSE S     +++  +P  R  S ++P L   Q + G+V +  +  +A  +   ++ 
Sbjct: 4   GYKFSETSEKRFQKMLEAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC-RNKIHQKPLHRNSD 130
            +V  +ATFYT +   PVG + H+Q+CGT+ C LRG +++ E +C R  IH       SD
Sbjct: 62  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTG--QTTSD 118

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              + EEVEC GAC  APMV I  D YE LTPE++++I+D
Sbjct: 119 QKFTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILD 158


>gi|116619256|ref|YP_821412.1| NADH-quinone oxidoreductase subunit E [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222418|gb|ABJ81127.1| NADH-quinone oxidoreductase, E subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 160

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++++ YPP R +SA+IP+LM AQ++ G VS   I  VA  + +  ++V E+ T+Y+    
Sbjct: 13  KLLTSYPPGRQRSAMIPMLMYAQDELGCVSDELIAEVARRIGVTPLQVNEVLTYYSMLHR 72

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G + HVQVC    C+L   +KL E    K+        +DG  S EEVEC GAC  A
Sbjct: 73  KPLG-KYHVQVCTNISCLLHDGDKLYEHTCKKLGITHKEVTADGQFSIEEVECMGACSWA 131

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P + I  D +  +TPE+L++++D     Q
Sbjct: 132 PAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160


>gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
          Length = 163

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           +YP  + +SA++  L  AQE+ GW+    IE VA +L +  I+  E+ATFYT + L PVG
Sbjct: 16  KYPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFEVATFYTMYDLKPVG 75

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VCG+  C L G + ++   + ++        +DG  + +EVEC GAC +AP++ 
Sbjct: 76  -KHKLCVCGSVSCFLNGSDDILAHLQKRLGIGIGETTADGLFTLQEVECLGACKDAPVLH 134

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +G    E LTPE ++ +I+    G  D 
Sbjct: 135 LGDRYVEHLTPEGVDALIEQLRGGSSDV 162


>gi|269469172|gb|EEZ80714.1| NADH dehydrogenase I chain E [uncultured SUP05 cluster bacterium]
          Length = 157

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 2/144 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++YP  +  SAV+  L   Q E +  +S  AI+ VA+ LDM  I   E+ATFY  +   
Sbjct: 14  VAKYPEGKQSSAVMEALKIVQAENDNTLSTDAIQAVADYLDMPGIAAAEVATFYENYNHK 73

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           PVG    ++ C    CML G + LI     K+  K      +G ++ ++VEC GACV AP
Sbjct: 74  PVGKHT-IRFCHNISCMLNGADDLIAYLEKKLKVKTGEVTKNGLINVKKVECLGACVGAP 132

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
           M  IG   YE+LT ++++EI+D  
Sbjct: 133 MFQIGDQYYENLTKQKIDEIVDGL 156


>gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
 gi|55980057|ref|YP_143354.1| NADH-quinone oxidoreductase subunit 2 [Thermus thermophilus HB8]
 gi|2499324|sp|Q56221|NQO2_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 2; AltName:
           Full=NADH dehydrogenase I chain 2; AltName: Full=NDH-1
           subunit 2
 gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109663|pdb|2FUG|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109671|pdb|2FUG|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109679|pdb|2FUG|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588589|pdb|3I9V|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588597|pdb|3I9V|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588605|pdb|3IAM|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588613|pdb|3IAM|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588621|pdb|3IAS|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588629|pdb|3IAS|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588637|pdb|3IAS|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588645|pdb|3IAS|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863605|pdb|3M9S|2 Chain 2, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863618|pdb|3M9S|B Chain B, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit NQO2 [Thermus thermophilus]
 gi|46197846|gb|AAS82258.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
 gi|55771470|dbj|BAD69911.1| NADH-quinone oxidoreductase chain 2 [Thermus thermophilus HB8]
          Length = 181

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F ++   ++ E  ++YPP   ++A++PLL R Q++EGW+    IE +A ++      V+
Sbjct: 2   GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +A+FY+ +Q  P G + H+QVC T  C L G E+L +     +   P     DG  S +
Sbjct: 62  GVASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQ 120

Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           +VEC G+C  AP++ +  + Y E +T  RLE ++     G+
Sbjct: 121 KVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161


>gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1]
          Length = 166

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 5/150 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++  +++YP  + QSAVIP L   Q+  G W+ R  ++ VA  L M  + V E+ATFY+ 
Sbjct: 18  IDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVYEVATFYSM 77

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQG 142
           F L PVG R  V +C    C L+G E ++     K+  K      D   TL  EE EC  
Sbjct: 78  FDLEPVG-RHKVNICTNICCWLKGAEDIVAYTEKKLGIKLGETTPDQRITLKIEE-ECLA 135

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  APM+++    Y DLTPE++++I+DA 
Sbjct: 136 ACTGAPMMVVDGHYYTDLTPEKIDQILDAL 165


>gi|292493664|ref|YP_003529103.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
 gi|291582259|gb|ADE16716.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
          Length = 176

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++  I++YP  + QSAVIP L   Q   G +++   ++ VA  L M  I V E+ATFY+ 
Sbjct: 29  IDHWIAKYPQEQKQSAVIPALHIVQAANGGYLTNELLDEVAEYLQMPPISVYEVATFYSM 88

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+L PVG R  + VC    C L G ++++   R ++         D   + +EVEC GAC
Sbjct: 89  FELKPVG-RHKLSVCTNISCQLCGSDQVVAHLRKRLGIGFGETTPDRRFTIKEVECLGAC 147

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             APM+M+G+  +E+LTPE++++I++A 
Sbjct: 148 GGAPMMMVGQTYHENLTPEKIDQILEAL 175


>gi|218295764|ref|ZP_03496560.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
 gi|218243923|gb|EED10450.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
          Length = 181

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F ++   ++    ++YPP   ++A++PLL R Q++EGW+    +E +A ++      V+
Sbjct: 2   GFFDDKKEFLEATFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERVEEIARLVGTTATEVM 61

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +A+FY+ +Q  P G R H+QVC T  C L G ++L +    ++   P     DG  S +
Sbjct: 62  GVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTQELGIGPGEVTPDGLFSVQ 120

Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           +VEC G+C  AP+V +  + Y E +T  RL+ +++    G+
Sbjct: 121 KVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKAGK 161


>gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec]
 gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec]
          Length = 273

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E++     E+I+RYP  R +SA++P+L   Q ++G V+   +E  A  L + +  V  
Sbjct: 3   LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEVSA 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  PVG    V VC    C+LRG E++ E     +         DGT++ E 
Sbjct: 63  VATFYTMYKRRPVGDWL-VSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTEDGTITLEH 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            EC  AC  AP++ +  + Y+ + P+  EEI++A   G+    RP P
Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGE----RPAP 164


>gi|162452500|ref|YP_001614867.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|161163082|emb|CAN94387.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 165

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ + E      ++++RYP    Q+A IP+L   QEQEGWVS   +  VA  L ++   V
Sbjct: 10  FALTAERRTEFEKILARYPNR--QAACIPVLHLCQEQEGWVSERVLRWVAEQLGLSAAHV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT F   PVG +  V VC T  C L G ++++  C  ++         DG ++ 
Sbjct: 68  QGVATFYTLFNKEPVG-KHQVWVCRTLSCALNGADQVLHHCEKRLGIHAGETTKDGKITL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              EC  +C  APM+ + +D +E LT E+++ I+D  +
Sbjct: 127 RTAECLASCGTAPMMQVDRDYHEGLTLEKVDAILDRLT 164


>gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
 gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
          Length = 312

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 88/190 (46%), Gaps = 54/190 (28%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+E++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + +  VA +L+M  +RV
Sbjct: 151 FKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISVMNEVARLLEMPPMRV 210

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT + L                                                
Sbjct: 211 YEVATFYTMYNL------------------------------------------------ 222

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF---STGQGDTIRPGPQIDRISSA 192
              EC GACVNAPMV I  D YEDLTPE ++ ++ A    STG      PGP   R +  
Sbjct: 223 ---ECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSAKVPAPGPLSGRQTCE 279

Query: 193 PAGGLTSLLD 202
            + GLT+L D
Sbjct: 280 NSAGLTNLRD 289


>gi|332883540|gb|EGK03823.1| hypothetical protein HMPREF9456_01890 [Dysgonomonas mossii DSM
           22836]
          Length = 174

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRV 75
           + SE     +NE++S YP  + +SA++P+L   Q+  + W+S   ++ VA IL++  I V
Sbjct: 11  NMSESLMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 70

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY+ F   P+  +   + C T  C LRG E L+E    K+  KP     DG  S 
Sbjct: 71  YEVVTFYSMFNQKPIA-KYMFEFCRTACCGLRGGENLMEYTCQKLGVKPGEITPDGMFSV 129

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             VEC GAC   PM+ +G + +E+L  E+++ +I+    G+
Sbjct: 130 VGVECLGACGYGPMLQLGDNYHENLNKEKIDTLIEDCKQGK 170


>gi|320354159|ref|YP_004195498.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
 gi|320122661|gb|ADW18207.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 3/154 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+F  +       +  RYP    +S ++P L   QEQEGW+S  A+  +A+ +      V
Sbjct: 14  FAFDAQRDAEFERLAKRYPTR--ESLILPSLWLVQEQEGWISAEAMAYIADRIGTFASMV 71

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E ATFYT + L P G + H+ VC T  C L G +++++  + ++  KP   ++DG  S 
Sbjct: 72  YEAATFYTMYNLQPKG-KYHICVCRTLSCYLLGKQEIVDYLQQELGIKPGDVSADGEFSL 130

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           EEVEC G C  AP+V +  + YE++  ++L+E++
Sbjct: 131 EEVECLGHCGTAPVVQVNGEFYENMNVDKLKELL 164


>gi|187930992|ref|YP_001890976.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711901|gb|ACD30198.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 162

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVNKVFYENLTIEKVNQIIDSL 161


>gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550390|gb|ABF40314.1| NADH dehydrogenase subunit E [Candidatus Koribacter versatilis
           Ellin345]
          Length = 160

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS+    W  E    YP  R  S ++P L+  Q++ G++S  AI  +AN +++  + V  
Sbjct: 3   FSDNLEKWFAEAQGHYPTKR--SPLVPFLLYVQDEVGYLSDEAIVEIANRVELTPLEVRN 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P+G + +VQVC    C+ RG E + E C+  +         DG  S EE
Sbjct: 61  VISYYSMLRTKPIG-KYNVQVCTNICCLQRGGEDIFEHCKKTLGIGHKQTTPDGLFSLEE 119

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VEC GAC  AP V +  D +E+LTPE ++ +I+++
Sbjct: 120 VECIGACSWAPAVQVNYDFHENLTPETMDAVIESY 154


>gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
 gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
          Length = 253

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E  A     +I RYP SR  SA++PLL   Q ++G+++ A I   A  L + +  V  +
Sbjct: 29  TERLAADAATIIGRYPQSR--SALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVTAV 86

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY+ ++  P G    V VC  T C + G + ++E   + +   P    +DGT++ E V
Sbjct: 87  ATFYSMYRREPTGEYL-VGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLEHV 145

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           EC  AC  AP+VM+  D +++ TP  + +++D+  +G+  T
Sbjct: 146 ECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPT 186


>gi|288917187|ref|ZP_06411556.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
 gi|288351378|gb|EFC85586.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
          Length = 242

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E++     E+I+RYP  R +SA++P+L   Q +EG V+   ++  A  L + +  V  
Sbjct: 3   LTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEEGAVTAEGVDFCAEQLGLTHAEVGA 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  PVG    V VC    C+LRG E + +     +         DGT++ E 
Sbjct: 63  VATFYTMYKRRPVGDWL-VSVCTNLSCLLRGGEDVYKRLSANLGVGHDQTTEDGTITLEH 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            EC  AC  AP++ +  + Y+ +TP+  E I+DA   G+    RP P
Sbjct: 122 AECLAACDYAPVMTVNYEFYDQVTPDSAEGIVDALRRGE----RPAP 164


>gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 168

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +    +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ATFYT F
Sbjct: 7   IEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P+G R H+Q+C    CML G E L+      +  +      DG  +   VEC GAC 
Sbjct: 65  HTEPIG-RFHLQLCDNVSCMLCGSEALLTHLEKTLGIRKGETTPDGAFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            AP++ +G D + +L   RL+ ++++F   +  T      ++R ++AP
Sbjct: 124 MAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166


>gi|254874053|ref|ZP_05246763.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254840052|gb|EET18488.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 156

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78
           +++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+
Sbjct: 3   KDTLYHIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EV
Sbjct: 63  ATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 122 ECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 155


>gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
 gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
          Length = 163

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 3/143 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++EVI+ YP  R  SA +PLL   QE  G++S  A+E +A+ L +  I VLE+ TFY  F
Sbjct: 11  IDEVITHYPVKR--SATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHVLEVVTFYPMF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P+G R H++VC T  C L G  K+ E  + +        + DG ++ E VEC  +C 
Sbjct: 69  RRKPIGRR-HIKVCRTLSCALMGGYKVCETMQKEFDTHLNEVSPDGEVTVEFVECLASCG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168
            AP+VMI +  +E++TP R  E+
Sbjct: 128 TAPVVMIDETLHENVTPARAREL 150


>gi|16263283|ref|NP_436076.1| NuoE2 NADH I chain E [Sinorhizobium meliloti 1021]
 gi|307304398|ref|ZP_07584149.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
 gi|307318105|ref|ZP_07597541.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|17380452|sp|P56910|NUOE2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 2; AltName:
           Full=NADH dehydrogenase I subunit E 2; AltName:
           Full=NDH-1 subunit E 2
 gi|14523960|gb|AAK65488.1| NuoE2 NADH:quinone oxidoreductase (chain E) [Sinorhizobium meliloti
           1021]
 gi|306896146|gb|EFN26896.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|306902600|gb|EFN33194.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
          Length = 168

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +    +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ATFYT F
Sbjct: 7   IEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P+G R H+Q+C    CML G E L+      +  +      DG  +   VEC GAC 
Sbjct: 65  HTEPIG-RFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
            AP++ +G D + +L   RL+ ++++F   +  T      ++R ++AP
Sbjct: 124 MAPVMQVGDDYHGNLDAARLDALLESFRAAERVT-----SVERAAAAP 166


>gi|56707215|ref|YP_169111.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257086|ref|YP_514448.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669685|ref|YP_666242.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315443|ref|YP_764166.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301250|ref|YP_001121218.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503300|ref|YP_001429365.1| NADH dehydrogenase I, subunit E [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009478|ref|ZP_02274409.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368322|ref|ZP_04984340.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368969|ref|ZP_04984982.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371431|ref|ZP_04987432.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|290952993|ref|ZP_06557614.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313813|ref|ZP_06804386.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|54114135|gb|AAV29701.1| NT02FT1740 [synthetic construct]
 gi|56603707|emb|CAG44668.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144917|emb|CAJ80265.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320018|emb|CAL08051.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130342|gb|ABI83529.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049027|gb|ABO46098.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254130|gb|EBA53224.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569670|gb|EDN35324.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253903|gb|ABU62409.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121890|gb|EDO66060.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|282158323|gb|ADA77714.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 162

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|150375770|ref|YP_001312366.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium medicae
           WSM419]
 gi|150030317|gb|ABR62433.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
           WSM419]
          Length = 169

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ TFYT F   P+
Sbjct: 12  ARYPDRR--SAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELVTFYTLFHTEPI 69

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R H+Q+C    CML G E L++     +  K     +DG  +   VEC GAC  AP++
Sbjct: 70  G-RFHLQLCDNVSCMLCGSEALLKHLETTLRIKKGETTADGVFTLSTVECLGACEMAPVM 128

Query: 151 MIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +G D + +L   RLE ++++F   +
Sbjct: 129 QVGDDYHGNLDNARLEAMLESFRAAE 154


>gi|118498237|ref|YP_899287.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324421|ref|ZP_03058194.1| NADH-quinone oxidoreductase, e subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|118424143|gb|ABK90533.1| NADH dehydrogenase I, E subunit [Francisella novicida U112]
 gi|194321486|gb|EDX18971.1| NADH-quinone oxidoreductase, e subunit family [Francisella
           tularensis subsp. novicida FTE]
          Length = 162

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|114777365|ref|ZP_01452362.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
 gi|114552147|gb|EAU54649.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
          Length = 170

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S  FSE     + E++ RYP +  QSA++P+L  AQE  G++S    + VA++L +  +
Sbjct: 8   NSHRFSEARLAEIAELVKRYPGA--QSALMPVLYMAQEDFGYLSMDVQQHVADVLGLRLM 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V E+ TFYT F+  P GT   ++VC    CML G  +L+      +  K      DG  
Sbjct: 66  QVREVVTFYTMFREKPCGTYL-LEVCTNAGCMLNGANELVAHMCETLGIKVGETTDDGLF 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           +  EVEC GAC  AP+V +    +E +TPE ++ +I
Sbjct: 125 TVAEVECAGACGGAPVVQVNHTYHEKVTPETMDALI 160


>gi|62262937|gb|AAX78114.1| unknown protein [synthetic construct]
          Length = 197

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 41  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 100

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 101 YNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGAC 159

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 160 CGSPMLEVDKVFYENLTIEKVNQIIDSL 187


>gi|208780264|ref|ZP_03247606.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
           FTG]
 gi|254375045|ref|ZP_04990525.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
 gi|151572763|gb|EDN38417.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
 gi|208743913|gb|EDZ90215.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
           FTG]
          Length = 162

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLGIKPGETTEDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|332184792|gb|AEE27046.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
           3523]
          Length = 162

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGQTTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|284106849|ref|ZP_06386292.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830028|gb|EFC34304.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 155

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 1/143 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++PLL  AQ +EG+VS+AAI  +A ILD+   +V E ATFYT   L P+G + H+QVC +
Sbjct: 1   MLPLLNLAQREEGYVSQAAIREIAGILDLTPPQVFETATFYTMLNLKPIG-KFHIQVCRS 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C L G + LIE  R  +         D   +   VEC G+C   PM+ I  D YE LT
Sbjct: 60  LMCALVGADPLIEWLRTHLGIGVGQTTDDKLFTLSAVECLGSCGTGPMMQINDDYYERLT 119

Query: 162 PERLEEIIDAFSTGQGDTIRPGP 184
            E++  I+          ++ GP
Sbjct: 120 EEKVGLIVRDLRETGDSAMKSGP 142


>gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX]
 gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca
           YX]
          Length = 239

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 3/158 (1%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP +R  SA++PLL   Q +EG+VS   I   A  L +    V  +ATFYT ++ 
Sbjct: 25  EIISRYPKAR--SALLPLLHLVQSEEGYVSNDGIAFCAEQLGLTTAEVTAVATFYTMYKR 82

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            PVG   HV VC    C + G +++    +  +  +      DG +S E VEC  AC  A
Sbjct: 83  RPVG-EYHVGVCTNPLCAVMGGDEIYSALKEHLGVENDGVTEDGKISLEHVECNAACDFA 141

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           P+VMI  + +++ TPE +++I+D    G+      GP 
Sbjct: 142 PVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTRGPN 179


>gi|50843382|ref|YP_056609.1| NADH dehydrogenase subunit E [Propionibacterium acnes KPA171202]
 gi|289425625|ref|ZP_06427397.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK187]
 gi|289426980|ref|ZP_06428699.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           J165]
 gi|295131456|ref|YP_003582119.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK137]
 gi|50840984|gb|AAT83651.1| NADH dehydrogenase I chain E [Propionibacterium acnes KPA171202]
 gi|289153926|gb|EFD02619.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK187]
 gi|289159802|gb|EFD07987.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           J165]
 gi|291375165|gb|ADD99019.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK137]
 gi|313763288|gb|EFS34652.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA1]
 gi|313773334|gb|EFS39300.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL074PA1]
 gi|313793604|gb|EFS41644.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA1]
 gi|313802885|gb|EFS44098.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA2]
 gi|313806331|gb|EFS44847.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA2]
 gi|313810763|gb|EFS48477.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA1]
 gi|313814972|gb|EFS52686.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA1]
 gi|313819442|gb|EFS57156.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA2]
 gi|313821248|gb|EFS58962.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA1]
 gi|313822297|gb|EFS60011.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA2]
 gi|313826145|gb|EFS63859.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA1]
 gi|313829366|gb|EFS67080.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA2]
 gi|313831074|gb|EFS68788.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL007PA1]
 gi|313833204|gb|EFS70918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL056PA1]
 gi|313838153|gb|EFS75867.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL086PA1]
 gi|314916742|gb|EFS80573.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA4]
 gi|314919132|gb|EFS82963.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA1]
 gi|314921212|gb|EFS85043.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA3]
 gi|314925994|gb|EFS89825.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA3]
 gi|314930360|gb|EFS94191.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL067PA1]
 gi|314956143|gb|EFT00539.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA1]
 gi|314959676|gb|EFT03778.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA1]
 gi|314962250|gb|EFT06351.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA2]
 gi|314963236|gb|EFT07336.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA1]
 gi|314969779|gb|EFT13877.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA1]
 gi|314973942|gb|EFT18038.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA1]
 gi|314976870|gb|EFT20965.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL045PA1]
 gi|314979335|gb|EFT23429.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA2]
 gi|314984992|gb|EFT29084.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA1]
 gi|314986333|gb|EFT30425.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA2]
 gi|314988570|gb|EFT32661.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA3]
 gi|315079687|gb|EFT51675.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA2]
 gi|315081015|gb|EFT52991.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL078PA1]
 gi|315083922|gb|EFT55898.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA2]
 gi|315085059|gb|EFT57035.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA3]
 gi|315089488|gb|EFT61464.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA1]
 gi|315097693|gb|EFT69669.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL038PA1]
 gi|315098100|gb|EFT70076.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA2]
 gi|315102682|gb|EFT74658.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA1]
 gi|315107938|gb|EFT79914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA1]
 gi|315108824|gb|EFT80800.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA2]
 gi|327325713|gb|EGE67510.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL096PA3]
 gi|327330839|gb|EGE72584.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL096PA2]
 gi|327442868|gb|EGE89522.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA2]
 gi|327445260|gb|EGE91914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA1]
 gi|327447754|gb|EGE94408.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA2]
 gi|327451635|gb|EGE98289.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA3]
 gi|327452288|gb|EGE98942.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA2]
 gi|327452505|gb|EGE99159.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL092PA1]
 gi|328752121|gb|EGF65737.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA2]
 gi|328755065|gb|EGF68681.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL020PA1]
 gi|328757013|gb|EGF70629.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA1]
 gi|328761549|gb|EGF75067.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL099PA1]
 gi|332676325|gb|AEE73141.1| NADH-quinone oxidoreductase subunit E [Propionibacterium acnes 266]
          Length = 261

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G + H+ VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188


>gi|282855270|ref|ZP_06264602.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
 gi|282581858|gb|EFB87243.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
 gi|314923990|gb|EFS87821.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL001PA1]
 gi|314965054|gb|EFT09153.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA2]
 gi|314983074|gb|EFT27166.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA3]
 gi|315090607|gb|EFT62583.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA4]
 gi|315093906|gb|EFT65882.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL060PA1]
 gi|315104125|gb|EFT76101.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA2]
 gi|327325782|gb|EGE67574.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL103PA1]
          Length = 261

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G + H+ VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188


>gi|332830192|gb|EGK02820.1| hypothetical protein HMPREF9455_01070 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRV 75
           + S+E    +NE++S YP  + +SA++P+L   Q+  + W+S   ++ VA IL++  I V
Sbjct: 12  NMSDELMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 71

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFYT F   PV  +   + C T  C LRG E L++    K+  K      DG  S 
Sbjct: 72  YEVVTFYTMFNQKPVA-KYMFEFCRTACCGLRGGEDLMDYTCQKLGVKQGEITPDGMFSV 130

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             VEC GAC   PM+ +G + +E+LT ++++ +I+    G+
Sbjct: 131 VGVECLGACGYGPMLQLGDNYHENLTKDKIDTLIEDCKEGK 171


>gi|153007186|ref|YP_001381511.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030759|gb|ABS28527.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 188

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + EV+ RYPP R  +A++P L   QE  G+++ A   + A+ L  +  R  E+ATFY  F
Sbjct: 42  LAEVLRRYPPDRKAAAMLPALRIGQEIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMF 101

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P+G R  V+VC    C L G ++L E  ++K        + DG ++  EVEC GAC 
Sbjct: 102 NTRPIG-RHLVEVCTNVSCCLTGGDRLFEYLKHKYGVTNGGTSQDGRVTLREVECLGACG 160

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP +++ ++ YE L P+++EEI+
Sbjct: 161 TAPAMLVDEEMYERLDPKKVEEIL 184


>gi|78485166|ref|YP_391091.1| NADH-quinone oxidoreductase, E subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363452|gb|ABB41417.1| NADH dehydrogenase I chain E [Thiomicrospira crunogena XCL-2]
          Length = 164

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 2/144 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++RYP  + QSAV+  L   QE  G  ++   ++ +A+ L+M  I V E+ATFY  ++  
Sbjct: 21  VARYPDDQKQSAVMAALRIVQETNGGHLTTELMDQIADYLEMPPIAVYEVATFYGNYEHE 80

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           PVG +  + +C +  CMLRG ++++     K++ K      DG  S ++VEC GAC  AP
Sbjct: 81  PVG-KHKICLCNSISCMLRGNDEILAHMEKKLNIKVGEVTEDGRFSIKKVECLGACGGAP 139

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
           M+ IGK  YE+LT   ++EI+D  
Sbjct: 140 MIQIGKTYYENLTETSVDEILDGL 163


>gi|77166019|ref|YP_344544.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254436398|ref|ZP_05049904.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884333|gb|ABA59014.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
 gi|207088088|gb|EDZ65361.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
          Length = 175

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 2/144 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           I++YPP R QSAVIP L   Q    G+++   ++ VA  L+M  I V E+ATFY+ ++L 
Sbjct: 32  IAKYPPERKQSAVIPALHIVQAVNGGYLTDKLLDAVAEYLEMRPISVYEVATFYSMYELK 91

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P+G R  + VC    C L G ++++   + ++         D   + +E EC GAC  AP
Sbjct: 92  PIG-RHKISVCTNISCQLSGSDEVVAHLQKRLGIGFGETTPDHRFTVKEAECLGACGGAP 150

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
           M+M G   +E+LT E++++I++A 
Sbjct: 151 MMMAGHTYHENLTSEKIDQILEAL 174


>gi|313813678|gb|EFS51392.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA1]
 gi|327333126|gb|EGE74853.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL097PA1]
          Length = 261

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G + H+ VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLA 188


>gi|254373578|ref|ZP_04989064.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571302|gb|EDN36956.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
          Length = 162

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|241667719|ref|ZP_04755297.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876263|ref|ZP_05248973.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842284|gb|EET20698.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 162

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YELKPVG-RHKLNLCTNVSCMLNGAYDILTHIEKKLGIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|332678973|gb|AEE88102.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
           Fx1]
          Length = 162

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5]
 gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5]
          Length = 364

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            SFSE +     E+I+RYP  R +SA++PLL   Q +EG+VS A +E  A +L +   +V
Sbjct: 1   MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  P G    V VC  T C + G +K+ +     +        +DG ++ 
Sbjct: 61  GAVATFYTMYKRKPTGDYL-VSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETTADGKITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           E  EC  AC   P++ +  D ++++ P+   ++++    G
Sbjct: 120 EHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAG 159


>gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
 gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
          Length = 162

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 6/160 (3%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           SS   S E+   ++  I++YP  + QSAV+  L  AQ+++GW++   ++ +AN L+M  I
Sbjct: 2   SSLMLSMEALKKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAI 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  + L P+G +  + VC   PC L G  + ++  + K+         DG  
Sbjct: 62  AVYEVATFYNMYNLKPIG-KYKLTVCTNLPCALSGSNQTVDYLKKKLDIGFNETTVDGLF 120

Query: 134 SWEEVECQGACVNAPMVMIGKD-----TYEDLTPERLEEI 168
           + +E EC GAC +AP++++          ED   + LEE+
Sbjct: 121 TLKEGECMGACGDAPVLLVNNKRMCSFMTEDQIDKLLEEL 160


>gi|167627157|ref|YP_001677657.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597158|gb|ABZ87156.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 162

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+ATFY  
Sbjct: 15  IDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTNDLQTALAEYLQVSKVDVYEVATFYCM 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +EVECQGAC
Sbjct: 75  YELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKEVECQGAC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 134 CGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|297565710|ref|YP_003684682.1| NADH-quinone oxidoreductase subunit E [Meiothermus silvanus DSM
           9946]
 gi|296850159|gb|ADH63174.1| NADH-quinone oxidoreductase, E subunit [Meiothermus silvanus DSM
           9946]
          Length = 183

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV S+YP  R  +A++PLL R Q+ EGW+S    E +A+I+      V
Sbjct: 1   MGFFDDKQEWLAEVFSQYPERR--AALMPLLRRVQQDEGWISPERQEEIAHIVGTTATEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FYT FQ  P G + H+QVC T  C + G ++L +     +   P    +DG  S 
Sbjct: 59  AGVMSFYTYFQSLPTG-KHHIQVCATLSCAIGGADELWDELVQTLGILPGEVTADGLFSI 117

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP+V I  + Y E +T  RL+ ++     G+
Sbjct: 118 QKVECLGSCHTAPVVQINDEPYVECVTKARLQALLQGLREGK 159


>gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152]
 gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM
           10152]
          Length = 245

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 5/171 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P   S  E  A+   E+I RYP  R  SA++PLL   Q ++G+V+   IE  A  L + 
Sbjct: 22  EPYPPSVRERLALDAKEIIGRYPQPR--SALLPLLHLVQSEDGYVTATGIEFCAEQLGLT 79

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+ F+ +P G   HV VC  T C + G + ++      +        +DG
Sbjct: 80  GAEVTAVATFYSMFRRTPTGDY-HVGVCTNTLCAVLGGDAILASLTEHLGIAAGETTADG 138

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++ E +EC  AC  AP+VM+  + +++ TPE    ++DA   G+   +RP
Sbjct: 139 AITVEHIECNAACDFAPVVMVNWEFFDNQTPESARALVDALRAGE--PVRP 187


>gi|118602279|ref|YP_903494.1| NADH-quinone oxidoreductase, E subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567218|gb|ABL02023.1| NADH dehydrogenase subunit E [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 157

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 2/142 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           I++YP  R  SAV+  L   Q E E  +S   I+ VA+ LDM  I V E+ATFY  +   
Sbjct: 14  IAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVATFYENYNHK 73

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            VG    ++ C    CML G + LI    NK+  +      DG +S ++VEC GACV AP
Sbjct: 74  KVGKYV-IRFCHNISCMLNGADDLIAYLENKLGVQTDEVTPDGLISVKKVECLGACVGAP 132

Query: 149 MVMIGKDTYEDLTPERLEEIID 170
           M  I  + +E+LT +++++I+D
Sbjct: 133 MFQINDEYFENLTFDKIDKIVD 154


>gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205]
 gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola
           CNS-205]
          Length = 305

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FSEE+     E+I+RYP  R +SA++PLL   Q +EG+VS A I   A +L +   +V  
Sbjct: 4   FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  P G    V VC  T C + G +++ +     +        +DGT++ E 
Sbjct: 64  VASFYTMYKRRPTGDWL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTADGTITLEH 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
            EC  AC   P++ +  D ++++ P+    ++D    G   T   G ++ R+
Sbjct: 123 AECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTPSRGARLCRL 174


>gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC
           25259]
 gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC
           25259]
          Length = 168

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GW+    I+ VA+ L M  I   E
Sbjct: 13  LSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYLQMPPIAAYE 72

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC LRG  ++    + K+         DG  + +E
Sbjct: 73  VATFYNMYDTQPVG-RHKITVCTNLPCALRGAGEIAAHLKEKLGIGFGETTEDGRYTLKE 131

Query: 138 VECQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAF 172
            EC GAC +APM +    T +  LTPE+++E++D  
Sbjct: 132 GECMGACGDAPMCLHNNHTMHTHLTPEKVDELLDKL 167


>gi|313679589|ref|YP_004057328.1| NADH dehydrogenase subunit e [Oceanithermus profundus DSM 14977]
 gi|313152304|gb|ADR36155.1| NADH dehydrogenase subunit E [Oceanithermus profundus DSM 14977]
          Length = 190

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV ++YP  R +SA++PLL R Q+ EG+V    ++ +A ++      V
Sbjct: 1   MGFFDDKQEWLAEVFAQYPEDRRRSALMPLLRRVQQDEGYVDFERMKEIAELVGTTATEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +Q  P G + H+QVC T  C L G ++L      ++   P     DG  S 
Sbjct: 61  AGVMSFYSYYQGLPTG-KYHIQVCRTLSCKLAGADELWHTLTERLGILPGEVTPDGRFSL 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
           + VEC G+C   P++ +G + Y E +T  RLE +++  
Sbjct: 120 QAVECLGSCHTGPVIQVGDEPYVERVTKARLEALLEGL 157


>gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase, E subunit [Flavobacterium johnsoniae
           UW101]
 gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101]
          Length = 176

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           +NE+IS YP  + +SA++P+L   Q+    W+S    + VA IL +  I V E+ TFYT 
Sbjct: 20  INELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAEILQIKPIEVYEVVTFYTM 79

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P+G +   + C T+ C LRG E L++    K+  K      DG  +   VEC GAC
Sbjct: 80  FNQKPIG-KYMFEFCQTSCCCLRGAEDLMDYTSEKLGIKMGETTPDGMFTIAGVECLGAC 138

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             APM+ +G    E LT E++++II
Sbjct: 139 GYAPMMQLGDFYKEKLTEEKIDQII 163


>gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 157

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + ES   ++  I++YP  + QSAV+  L  AQE++GW+S  AIE VA  L MA I   E
Sbjct: 2   LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG +  V VC   PCML G     E  + K+         DG ++ +E
Sbjct: 62  VASFYNMYDLKPVG-KYKVSVCTNLPCMLTGGVDAGEYLKQKLGIDYNETTPDGLITLKE 120

Query: 138 VECQGACVNAP-MVMIGKDTYEDLTPERLEEII 169
            EC GAC +AP M++  +     + PE++++++
Sbjct: 121 GECMGACGDAPVMIVNNRRMCSWMNPEQIDKLL 153


>gi|148244393|ref|YP_001219087.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326220|dbj|BAF61363.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 157

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 2/142 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           I++YP  R  SAV+  L   Q E +  +S + I+ VA+ LDM  I V E+ATFY  +   
Sbjct: 14  IAKYPKDRQSSAVMQALKIVQAENKNILSASIIQEVADYLDMPDIVVQEVATFYENYNYK 73

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            VG    ++ C    CML G + LI+   NK+  K      DG +S ++VEC GACV AP
Sbjct: 74  KVGKYV-IRFCHNISCMLNGADDLIKHLENKLGVKTGEVTLDGLISVKKVECLGACVGAP 132

Query: 149 MVMIGKDTYEDLTPERLEEIID 170
           M  I +  +E+LT +++++I+D
Sbjct: 133 MFQINEKYFENLTIDKIDKIVD 154


>gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 114

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA++L + +IRV E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+   
Sbjct: 4   VADMLHIPHIRVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGIN 62

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                 D   + +EVEC GACVNAP+V I  D YE+LTPE++E II   S
Sbjct: 63  IGETTKDNLFTLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 112


>gi|313836204|gb|EFS73918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA2]
 gi|314927639|gb|EFS91470.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL044PA1]
 gi|314971362|gb|EFT15460.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA3]
 gi|328906299|gb|EGG26074.1| NADH dehydrogenase subunit E [Propionibacterium sp. P08]
          Length = 260

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   + ++ SRYP  R  SA++P+L   Q  +G VS   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMRQIASRYPDPR--SALLPILHLVQSVDGRVSPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G + H+ VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAG-QHHIGVCTTALCAVMGGEEVLARVEKKLGIKEGETTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E VEC  AC  AP++M+  +  +++TP R EEI+DA +
Sbjct: 150 LEGVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDALA 188


>gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440]
 gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica
           CNB-440]
          Length = 317

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FSEE+     E+I+RYP  R +SA++PLL   Q +EG+VS A I   A +L +   +V  
Sbjct: 16  FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 75

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  P G    V VC  T C + G +++ +     +        +DGT++ E 
Sbjct: 76  VASFYTMYKRRPTGDWL-VSVCTNTMCNVLGGQEVYDALVEHLGVGHEETTADGTVTLEH 134

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
            EC  AC   P++ +  D ++++ P+    ++D    G   T   G ++ R+
Sbjct: 135 AECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRPTSSRGARLCRL 186


>gi|325067541|ref|ZP_08126214.1| NADH dehydrogenase subunit E [Actinomyces oris K20]
          Length = 256

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT  HV VC    C + G +++ +             + DGT+S E VEC  AC 
Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + +++ TP+    +I A   G+      GP+
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206


>gi|326772148|ref|ZP_08231433.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
 gi|326638281|gb|EGE39182.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
          Length = 256

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT  HV VC    C + G +++ +             + DGT+S E VEC  AC 
Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + +++ TP+    +I A   G+      GP+
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206


>gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)]
 gi|256785937|ref|ZP_05524368.1| NADH dehydrogenase subunit E [Streptomyces lividans TK24]
 gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24]
 gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24]
          Length = 290

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++PLL   Q +EG V+R  ++  A++LD+    V  +ATFYT ++ 
Sbjct: 36  EIIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAEVTAVATFYTMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  ++ +         DG ++ E +EC  AC  A
Sbjct: 94  RPSGDY-QVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTLEHIECNAACDFA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP  ++ ++D    G+
Sbjct: 153 PVVMVNWEFFDNQTPASVKALVDDLRAGR 181


>gi|320532545|ref|ZP_08033354.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135239|gb|EFW27378.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 256

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 1/160 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT  HV VC    C + G +++               + DGT+S E VEC  AC 
Sbjct: 108 RRHPVGTY-HVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERVECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + +++ TP+    +I A   G+      GP+
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVVPTRGPE 206


>gi|116750129|ref|YP_846816.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699193|gb|ABK18381.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 151

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  + +R+   R + A+IP+L   Q + G++   A++  A     + + V  ++TFY QF
Sbjct: 5   LQRIFTRH--DRKRDALIPVLQDIQGEFGYLPPHAMQAAARHCRTSAVEVYGVSTFYAQF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + SPVG R  V VC  T C + G  +++E C++++  +P     DG  + E V C GAC 
Sbjct: 63  KFSPVG-RHTVTVCQGTACHVMGGHRILEECKSQLGVQPGQTTPDGMFTLETVACIGACA 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P V++ KDTY  + PER+ EI++A ++
Sbjct: 122 LSPAVVVDKDTYGRMKPERITEILNAATS 150


>gi|326329614|ref|ZP_08195936.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952610|gb|EGD44628.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
          Length = 213

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S + E+   + E+ +RYP +R  S ++P+L   Q  EG V+   I+  A++L +    V
Sbjct: 1   MSLAPETFDELREIAARYPQAR--SGLLPMLHLVQSVEGRVTPEGIQACADVLGLTPAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG R HV VC  T C + G +++    R K+        +DG ++ 
Sbjct: 59  SGVATFYTMYKRHPVG-RHHVGVCTNTLCAVMGGDEIFACLREKLEVGNDETTADGAITL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           E +EC  AC  AP+VM+  + +++ TPE   +++D    G+
Sbjct: 118 EHIECNAACDYAPVVMVNWEFFDNQTPESAAQLVDDLREGR 158


>gi|194366600|ref|YP_002029210.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia R551-3]
 gi|194349404|gb|ACF52527.1| NADH-quinone oxidoreductase, E subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 175

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ EGW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|57641549|ref|YP_184027.1| NADH dehydrogenase subunit E [Thermococcus kodakarensis KOD1]
 gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus
           kodakarensis KOD1]
          Length = 154

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 3/152 (1%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           + I  YPP    S++IPLL R QE+ G++ R  +E +AN L +   RV  +ATFY QF+ 
Sbjct: 6   DYIRSYPPE--PSSLIPLLQRTQERFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G +  V+VC  T C + G   + +  + ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLG-KYVVKVCHGTACHVNGAVNIAQALKEELGIEEGQTTEDGLVTLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           P++MI +  +  LTP+++ +++     G+ D 
Sbjct: 123 PVIMINEKVFGKLTPDKVRKLVKQLKEGKLDV 154


>gi|117927480|ref|YP_872031.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
 gi|117647943|gb|ABK52045.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
          Length = 269

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           +V++RYP  R +SA++PLL   Q ++G+VS   I +VA+IL +    V  +ATFYT ++ 
Sbjct: 58  QVLARYP--RPRSALMPLLYLVQAEQGYVSADGIRLVADILGLTTAEVTAVATFYTMYRR 115

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  V VC  T C + G + + +  R  +  +      DG ++ E +EC  AC  A
Sbjct: 116 RPCG-RYLVGVCTNTLCAILGGDAIFDALREHLGIENGETTPDGAVTLEHIECNAACDYA 174

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + +++ TP    E++D    G
Sbjct: 175 PVVMVNWEFFDNQTPASARELVDRLRAG 202


>gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus
           KT]
 gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT]
          Length = 159

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S ES   ++  +++YPP   Q+AV+  L  AQ ++GW+S+  I  VA+ L +  I  
Sbjct: 1   MSLSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAA 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           LE+ATFY  ++L PVG +  + VC    CMLR   +++   + ++         D   + 
Sbjct: 61  LEVATFYNMYELEPVG-KYKITVCTNISCMLRDSAEIVAHLQKRLGIGFNETTPDNRYTL 119

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            E EC G C  AP++ I   + +E LTPE++++I++  
Sbjct: 120 REGECMGCCGGAPLLHINNTEMHEFLTPEKVDQILEGL 157


>gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora setae
           KM-6054]
          Length = 246

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP SR  SA++PLL   Q ++G V+   I   A  L++    V  +ATFYT ++ 
Sbjct: 30  ELISRYPQSR--SALLPLLHLVQAEDGCVTPTGIRFCAEQLELTTAEVTAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G   HV VC  T C + G +++ +     +         DG++S E +EC  AC  A
Sbjct: 88  RPAG-EYHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDGSVSIERIECNAACDYA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           P+VM+  + +++ TPE  +E++D    GQ   +RP
Sbjct: 147 PVVMVNWEFFDNQTPESAKELVDRLRAGQ--EVRP 179


>gi|319787439|ref|YP_004146914.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465951|gb|ADV27683.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 175

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+ +   ++  ++++PP R +SAV+  L  AQEQ +GW+S   I  VA  LD+  +   
Sbjct: 19  LSDATRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLSDELIAAVAKYLDIPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F+  PVG R +V  C    C L G + L+     K+  K     +DG +  +
Sbjct: 79  EVATFYSMFETQPVG-RNNVAFCTNISCWLNGAQDLVAHAEKKLGCKLGESTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  AP+V+I    +E LT E+++E++D  
Sbjct: 138 REEECVAACCGAPVVVINGHYHEKLTTEKVDELLDGL 174


>gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
 gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
          Length = 287

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I+RYP +R  SA++PLL   Q Q+G ++ A I   A+ L +    V  +ATFY+ ++ +
Sbjct: 37  IIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVATFYSMYRRT 94

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + ++E     +   P    +DG ++ E VEC  AC  AP
Sbjct: 95  PTGEYL-VGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAACDFAP 153

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +VM+  D +++ TP    E++D   +GQ
Sbjct: 154 VVMVNWDFFDNQTPASARELVDGLRSGQ 181


>gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
 gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
          Length = 279

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG+VSR  I   A +L +    V  +ATFYT ++ 
Sbjct: 61  EVIARYPDSR--SALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTTAEVTAVATFYTMYRR 118

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 119 GPSGDY-QVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGKVTLEHIECNAACDYA 177

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP+  + ++D    G+
Sbjct: 178 PVVMVNWEFFDNQTPQSAKAMVDDLLAGR 206


>gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila
           UNI-1]
 gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1]
          Length = 173

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++++YP    +SAV+PLL  AQ +EG+V R A+E +A IL+M+   V  I  FYT +
Sbjct: 12  VKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVASIVGFYTLY 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G R H+QVC   PC LRG +K +E    ++  +      DG  + E V+C  AC 
Sbjct: 72  YDQPAG-RYHIQVCTDLPCALRGADKFLEELCQRLGIREGETTPDGLFTVEAVKCLAACH 130

Query: 146 NAPMVMIGKD 155
            AP+  +  D
Sbjct: 131 RAPVFQVQGD 140


>gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 165

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVI-PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           FSE     ++ + S++P  + +SA+I  LL+   +  G++S   I  +AN LD+  I V 
Sbjct: 7   FSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDIQKIDVY 66

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW- 135
           E+ATFY+ F L PVG +  + VC    CMLR  + ++     ++  K      D      
Sbjct: 67  EVATFYSMFNLKPVG-KNTISVCTNVSCMLRNSDGIVNHIEKRLKIKIGESTKDNKFYLK 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           +E+EC  AC  APM+ +    YE+LT E++++I+D
Sbjct: 126 DEMECLAACNGAPMMQVNHINYENLTFEKVDKILD 160


>gi|328950035|ref|YP_004367370.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450359|gb|AEB11260.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 200

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV  +YPP   +SA++PLL R Q +EG+VS A I  +A ++      V
Sbjct: 1   MGFFDDKQDWLEEVFRQYPPEGRRSAIMPLLRRVQTEEGYVSEARIREIAELVGTTPTEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +   P G + H+QVC T  C L G ++L +     +   P     DG  S 
Sbjct: 61  KGVMSFYSYYHELPTG-KYHLQVCATLSCALAGADELWDYLVETLGILPGEVTPDGRFSI 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST-----------GQGDTIRP 182
           ++VEC G+C  AP+V +  + Y E +T  RL+ +++               G G  +RP
Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKADRPLEEIELPEGCGHVVRP 178


>gi|317123849|ref|YP_004097961.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
 gi|315587937|gb|ADU47234.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
          Length = 255

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 5/185 (2%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
            L  E  +P +    E+  +   EVI+RYP  R  SA++PLL   Q  +G+V+   + + 
Sbjct: 14  HLRPESKEPYAPEVLEQLRVDAAEVIARYPQKR--SALLPLLHLVQSVDGYVTGRGVSLC 71

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A +LD+    V  +ATFYTQF+  P G    V VC  T C + G +++ +     +    
Sbjct: 72  AELLDLTEAEVSGVATFYTQFKRHPNGEYT-VGVCTNTLCAVMGGDQIFDTVAEHLGIGH 130

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               +DG ++ E +EC  AC  AP+VM   + +++ TP+   +++D     +G  +RP  
Sbjct: 131 DETTADGKITLERIECNAACDYAPVVMTNWEFFDNQTPDSTVQLVDDLR--EGKDVRPTR 188

Query: 185 QIDRI 189
             DR+
Sbjct: 189 GPDRV 193


>gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
 gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
          Length = 286

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I+RYP +R  SA++PLL   Q Q+G ++ A I   A+ L +    V  +ATFY+ ++ +
Sbjct: 37  IIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVATFYSMYRRT 94

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + ++E     +   P    +DG ++ E VEC  AC  AP
Sbjct: 95  PTGEYL-VGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVECNAACDFAP 153

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +VM+  D +++ TP    E++D   +GQ
Sbjct: 154 VVMVNWDFFDNQTPASARELVDGLRSGQ 181


>gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J]
 gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J]
          Length = 167

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|254391141|ref|ZP_05006348.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|294814398|ref|ZP_06773041.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442788|ref|ZP_08217522.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|197704835|gb|EDY50647.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|294326997|gb|EFG08640.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
           ATCC 27064]
          Length = 282

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             +VISRYP SR  SA++PLL   Q +EG+VSR  +   A +LD+    V  +ATFYT +
Sbjct: 34  AKDVISRYPDSR--SALLPLLHLVQSEEGFVSRTGMRFCAEVLDLTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 92  RRGPSGDY-QVGVCTNTLCAVMGGDAIFEDLKEHLGVGNNGTTEDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP+VM+  + +++ TP     ++D    G+
Sbjct: 151 FAPVVMVNWEFFDNQTPASARALVDDLRAGR 181


>gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703 [Drosophila yakuba]
          Length = 155

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149


>gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 276

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP SR  SA++PLL   Q +EG VSR  +   A +LD+    V  +ATFY+ +
Sbjct: 28  AKEIIARYPGSR--SALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFYSMY 85

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 86  RRKPSG-EYQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHIECNAACD 144

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP+VM+  + +++ TP+  ++++D    G+
Sbjct: 145 FAPVVMVNWEFFDNQTPQSAKQLVDDLRAGE 175


>gi|254525004|ref|ZP_05137059.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
           SKA14]
 gi|219722595|gb|EED41120.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 175

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ EGW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|269794077|ref|YP_003313532.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
 gi|269096262|gb|ACZ20698.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
          Length = 319

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
            ++++ RYP +R  SA++P+L   Q ++G+VSR+ I   A +LD+    V  +ATFYTQ+
Sbjct: 30  AHQIVGRYPQAR--SALLPMLHLVQSEDGYVSRSGITFCAEVLDLTPAEVSAVATFYTQY 87

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P GT   V VC  T C + G +++ +     +         DG ++ E VEC  AC 
Sbjct: 88  KRRPNGTYT-VGVCTNTLCAIMGGDEIFDELSEHLGIGHDETTEDGAVTLERVECNAACD 146

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP++M+  + ++D TP     ++D    G+
Sbjct: 147 YAPVMMVNWEFFDDQTPASARGVVDDLRFGK 177


>gi|119897691|ref|YP_932904.1| NADH dehydrogenase subunit E [Azoarcus sp. BH72]
 gi|119670104|emb|CAL94017.1| putative NADH-ubiquinone oxidoreductase chain E [Azoarcus sp. BH72]
          Length = 159

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  I++YPP + QSA +  L  AQ ++GW+S+  I  VA+ L M  I V E
Sbjct: 2   LSQESLQQIDREIAKYPPDQKQSAAMSALRIAQVEKGWLSKETIAFVADYLQMPAIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG R  + VC   PC L G     E  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAAEYIKQKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169
            EC GAC +AP+++    T    +T E++++++
Sbjct: 121 GECMGACGDAPVLLHNNHTMCSWMTTEKIDQLL 153


>gi|239943480|ref|ZP_04695417.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
 gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379]
 gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
 gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
          Length = 279

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EV++RYP SR  SA++PLL   Q +EG+VSR  I   A  LD+    V  ++TFY+ +
Sbjct: 21  AKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGIAFCAETLDLTTAEVTAVSTFYSMY 78

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + +  +  +         DG ++ E +EC  AC 
Sbjct: 79  RRRPSGDY-QVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAACD 137

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            AP+VM+  + +++ TPE   +++D    G+  T+ P
Sbjct: 138 FAPVVMVNWEFFDNQTPESATQLVDDLIAGR--TVEP 172


>gi|149909801|ref|ZP_01898452.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36]
 gi|149807133|gb|EDM67089.1| NuoE2 NADH  I CHAIN E [Moritella sp. PE36]
          Length = 207

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + +++  YP  R  SA++P L  AQ+  G++   A   +A ILD+  I V E+A+FYT +
Sbjct: 18  IADIVKCYPTQR--SAIMPALYLAQDTYGFLDETAYRAIAEILDIPEIWVFELASFYTLY 75

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +   +G + ++Q+C   PCMLRG   L+   + ++       ++DG  +   VEC G+C 
Sbjct: 76  KNKKIG-KYNLQLCTNVPCMLRGAYDLLGHLQTRLGINKGDTSTDGLFTLTTVECIGSCD 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP +M+ +  + +L+ ER+++++D  S
Sbjct: 135 LAPAMMVNETYHTNLSKERVDKLLDQLS 162


>gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836]
 gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM
           17836]
          Length = 275

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           +       SE +   + E+ +RYP  R  SA++P+L   Q  EG V+   IE  A++L +
Sbjct: 15  YSTGDSKISETTIAEMRELAARYPVGR--SALLPMLHLVQSVEGRVTPEGIEACADVLGL 72

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFYT ++  PVG   HV VC  T C + G + + E  +  +         D
Sbjct: 73  TGAEVSAVATFYTMYKRRPVGDY-HVGVCTNTLCAVMGGDLIFERLKQHLDVGNDETTED 131

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           G ++ E +EC  AC  AP++M+  + ++D+TPE   +++D    G
Sbjct: 132 GKITLEHIECNAACDYAPVMMVNWEFFDDMTPESATQLVDDLRDG 176


>gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000]
 gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CMR15]
          Length = 167

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLTVCTNLPCALSGGERAADYLKQKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|301631487|ref|XP_002944829.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Xenopus (Silurana) tropicalis]
          Length = 163

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YPP + QSAV+  L   Q+++GWVS+ +  V+A IL M  I V E+ TFY  +   P
Sbjct: 13  VAKYPPEQKQSAVMACLSIVQQEQGWVSQESEAVIAEILGMPQIAVHEVTTFYNMYNQHP 72

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LRG  + +     K+  +      DG  + ++ EC GAC +AP+
Sbjct: 73  VG-KFKLNVCTNLPCQLRGGYEALHHLEAKLGVQMGETTPDGLFTLQQCECLGACADAPV 131

Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177
           +++  ++    +  E+L++++D     +G
Sbjct: 132 MLVNDRNMCSFMDGEKLDQLVDGLKAAEG 160


>gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155]
 gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str.
           MC2 155]
          Length = 245

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++I+RYP +R  SA++PLL   Q Q+G+++ A I   A  L +    V  +ATFY+ ++ 
Sbjct: 39  QIIARYPDAR--SALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAVATFYSMYRR 96

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           +P G    V VC  T C + G + ++E   + +   P     DG ++ E VEC  AC  A
Sbjct: 97  TPTGDYL-VGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTLEHVECNAACDYA 155

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + Y++ TP    +++D   +G
Sbjct: 156 PVVMVNWEFYDNQTPSSARDLVDGLRSG 183


>gi|261856546|ref|YP_003263829.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
           neapolitanus c2]
 gi|261837015|gb|ACX96782.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
           neapolitanus c2]
          Length = 165

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+ +   ++  +S+YPP + QSAV+  L   Q Q EG+++   ++ +A  L+M  I V 
Sbjct: 9   LSDHTRHEIDHWLSKYPPEQKQSAVLAALRETQHQNEGYLTTDLMDAIAEYLEMPPISVY 68

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+  +  P G R HV +C    C L G ++++  C  K+  K      DG +  +
Sbjct: 69  EVATFYSMLETKPCG-RHHVSICTNISCALMGSDEIVAHCEKKLGIKLGESTPDGRIYLK 127

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC   PM+ +    YE LTP++++ I+D  
Sbjct: 128 VEEECLAACDGGPMMQVDHVYYERLTPQKVDAILDKL 164


>gi|163848444|ref|YP_001636488.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526372|ref|YP_002570843.1| NADH-quinone oxidoreductase subunit E [Chloroflexus sp. Y-400-fl]
 gi|163669733|gb|ABY36099.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450251|gb|ACM54517.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++RY   R  SAV+PLL  AQ+  G+++  AI  VA ILD+    V E+  FYT F
Sbjct: 11  IEAIVARYASKR--SAVLPLLYLAQDTYGYLTDEAIREVATILDLPPTDVYEVVGFYTLF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVGT   +QVC   PC   G E+LI   +  +  +     +DG  + + V+C  AC 
Sbjct: 69  YDRPVGTWV-LQVCDDVPCCFCGAEELISALKQALGIREEETTADGMFTLQRVKCLAACD 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP++    D   D+TPER+E +++
Sbjct: 128 RAPVLQANLDYVYDVTPERVEVLLN 152


>gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S]
 gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S]
          Length = 688

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 7/156 (4%)

Query: 27  NEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +E+I+RY      PP   +SA++PLL   Q ++G VS+A IE  A  L +    V  +AT
Sbjct: 37  DEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIEFCAAQLGLTAAEVTAVAT 96

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT ++  P GT  HV VC  + C + G + +    R  +         DG ++ E +EC
Sbjct: 97  FYTMYRREPTGTY-HVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTPDGAITLEHIEC 155

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             AC  AP++M+  + +++ TPE    ++DA   G+
Sbjct: 156 NAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGE 191


>gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
 gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
          Length = 245

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I RYP SR  SA++PLL   Q +EG+VSR  I   A +L +    V  +ATFYT ++ 
Sbjct: 30  EIIGRYPDSR--SALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEVTAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + +  +  +        +DG ++ E +EC  AC  A
Sbjct: 88  KPSGDY-QVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLEHIECNAACDYA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP+  + ++D    G+
Sbjct: 147 PVVMVNWEFFDNQTPQSAKALVDDLLAGR 175


>gi|78044572|ref|YP_359585.1| Fe-hydrogenase subunit gamma [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 161

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E++S+Y   +   A+IP+L  AQE  G++ R  +E ++  L + + +V  +ATFY QF
Sbjct: 17  LKELLSQYQGQK--GALIPVLQGAQEIYGYLPREVMEEISRSLKIPFSKVYGVATFYAQF 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  ++ C  T C +RG  K+ E  +N++         D   + E V C GAC 
Sbjct: 75  HLKPRG-RNVIRACLGTACHVRGGAKVFETLKNELGIGDGETTPDLRFTLESVACIGACG 133

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++M+  DTY  LTP++++EI+  +
Sbjct: 134 LAPVIMVNNDTYGRLTPDKVKEILAKY 160


>gi|237748887|ref|ZP_04579367.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
 gi|229380249|gb|EEO30340.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
          Length = 159

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SEES   ++  + ++PP++ +SA I  L  AQ+++GW+S   I+ VAN L +  I V E
Sbjct: 3   LSEESYRKIDRELEKFPPTKKRSAAIAALTVAQDEKGWLSPDVIKEVANYLGLPAIAVGE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY+ F  SPVG +  + VC   PC + G ++     R K+  +      DG  +   
Sbjct: 63  VASFYSMFNTSPVG-KYKIAVCSNLPCEMTGSDQAAAYLRQKLGIEFGETTPDGLFTLVA 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170
            EC GAC + P++M+  K+ +  +T ++++ +++
Sbjct: 122 SECMGACGDGPVIMVNNKNMHMRMTNDKIDRLLE 155


>gi|156741305|ref|YP_001431434.1| NADH-quinone oxidoreductase subunit E [Roseiflexus castenholzii DSM
           13941]
 gi|156232633|gb|ABU57416.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 174

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 4/155 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S  E+    +  +I+RYP  R  SAV+PLL  AQ++ G+++ AA+  VA +LDM    V
Sbjct: 1   MSLIEKYGAEIESIIARYPHKR--SAVLPLLFIAQDEYGYLTDAAMREVATLLDMPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FY+     PVG R  +QVC   PC   G E LI   + K+         DG  + 
Sbjct: 59  FEVAGFYSLLYEQPVG-RWVLQVCDDVPCAFCGAEDLIAALQAKLGIAVDQTTPDGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEII 169
           + V+C   C +AP++    + Y DL TPE+++ ++
Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVDAVL 152


>gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
 gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + QSAV+  L  AQ+++GW++   ++ VA  L M  I V E
Sbjct: 2   LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT + L P+G +  + VC   PC L G  + +   R K+        +DG  + +E
Sbjct: 62  VATFYTMYNLQPIG-KYKITVCTNLPCALSGANEAVAHFREKLGIGFNETTADGKFTLKE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++  K     ++ ++++++++  S
Sbjct: 121 GECMGACGDAPVLLVNNKRMCSFMSNDKIDQLLEDLS 157


>gi|227204477|dbj|BAH57090.1| AT4G02580 [Arabidopsis thaliana]
          Length = 163

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 18/154 (11%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +
Sbjct: 1   MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
             K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI++
Sbjct: 60  GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 119

Query: 171 AFSTGQ---GDTIRPGPQIDRISSAPAGGLTSLL 201
               G+     T  P     RI   P GG  +LL
Sbjct: 120 KLRKGEKPPHGTQNP----KRIKCGPEGGNKTLL 149


>gi|239929610|ref|ZP_04686563.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
 gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
 gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG V+R  ++  A++L +    V  +ATFYT ++ 
Sbjct: 36  EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 94  RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACDYA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE  + ++D    G+
Sbjct: 153 PVVMVNWEFFDNQTPESAKRMVDDLRAGR 181


>gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I]
 gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50]
 gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS]
          Length = 164

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GW+    +E VAN + +  I V E
Sbjct: 3   LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVGT   + VC   PC LR  EK  +  + K+        +DG  +  E
Sbjct: 63  VATFYNMFDVKPVGTH-KIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC ++P++++  K     +T E+L+ ++D   + QG++
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKS-QGES 163


>gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718]
 gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 162

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           SS   S E+   ++  +++YP  R QSAV+  L  AQ+++GW++   ++ +A+ L+M  I
Sbjct: 2   SSSMLSTEALRKIDREVAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAI 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  + L PVG +  + VC   PC L G  +  +  + K+        +DG  
Sbjct: 62  AVYEVATFYNMYNLKPVG-KYKLTVCTNLPCALSGGNQTADYLKQKLGIGFNETTTDGLF 120

Query: 134 SWEEVECQGACVNAPMVMIGKD-----TYEDLTPERLEEI 168
           + +E EC G+C +AP++++          ED   + LEE+
Sbjct: 121 TLKEGECMGSCGDAPVLLVNNKRMCSFMTEDQIDKLLEEL 160


>gi|329944206|ref|ZP_08292465.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530936|gb|EGF57792.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 256

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLFQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P GT  HV VC    C + G +++               + DGT+S E +EC  AC 
Sbjct: 108 RRHPAGTY-HVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERIECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + +++ TP+    +I A   G+      GP+
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPE 206


>gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 285

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EV++RYP SR  SA++PLL   Q +EG+VSR  +   A  LD+    V  +ATFY+ +
Sbjct: 32  AKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAETLDLTTAEVTAVATFYSMY 89

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + +  +  +         DG ++ E +EC  AC 
Sbjct: 90  RRRPSGDY-QVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGKVTLEHIECNAACD 148

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            AP+VM+  + +++ TPE    ++D    G+  T+ P
Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183


>gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
 gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
          Length = 167

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G ++  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGDRAADYLKQKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|226227805|ref|YP_002761911.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
 gi|226090996|dbj|BAH39441.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
          Length = 158

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP     S  IP L R QE+ G+++ + I+ +   L +  ++V E+  FYTQF   P+G
Sbjct: 17  RYPSDFTGSLTIPCLRRIQEERGYIADSDIDELVAYLGVPRMQVDEVIAFYTQFTRVPLG 76

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
              H+QVC    C LRG E L+     K+  +P    +DG  +   VEC  +C  APM+M
Sbjct: 77  NH-HLQVCHNLSCSLRGAEGLVGYLCAKLGIQPGETTADGKFTLSTVECLASCGTAPMMM 135

Query: 152 IGKDTYEDLTPERLEEIIDAFS 173
           +    +E+LTP  ++ +++  S
Sbjct: 136 VNDTYHENLTPASVDALLEDLS 157


>gi|282860723|ref|ZP_06269789.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
 gi|282564459|gb|EFB69995.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
          Length = 285

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EVI+RYP SR  SA++PLL   Q +EG+VSR  +   A +L +    V  +ATFYT +
Sbjct: 32  AKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAELLGLTTAEVTAVATFYTMY 89

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + +  ++ +         DG ++ E +EC  AC 
Sbjct: 90  RRRPSGDY-QVGVCTNTLCAVMGGDAIFDRLKDHLGVGNDETTEDGKVTLEHIECNAACD 148

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            AP+VM+  + +++ TPE    ++D    G+  T+ P
Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183


>gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
 gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
          Length = 688

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 27  NEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +E+I+RY      PP   +SA++PLL   Q ++G VS+A I+  A  L +    V  +AT
Sbjct: 37  DEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIDFCAAQLGLTAAEVTAVAT 96

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT ++  P GT  HV VC  + C + G + +    R  +        +DG ++ E +EC
Sbjct: 97  FYTMYRREPTGTY-HVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTADGAITLEHIEC 155

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             AC  AP++M+  + +++ TPE    ++DA   G+
Sbjct: 156 NAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGE 191


>gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822]
 gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           parapertussis]
          Length = 164

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GW+    +E VAN + +  I V E
Sbjct: 3   LSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVGT   + VC   PC LR  EK  +  + K+        +DG  +  E
Sbjct: 63  VATFYNMFDVKPVGTH-KIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC ++P++++  K     +T E+L+ ++D   + QG++
Sbjct: 122 GECMGACGDSPVLILNNKHMCVRMTEEKLDALVDGLKS-QGES 163


>gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 639

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 6/179 (3%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + +P +  F+ +S + ++E++  YP    +SA++PLL   Q  E  VS A IE +A IL 
Sbjct: 4   KLEPETPFFAAKSEL-LSEILGSYPEYGRRSAIMPLLWAVQRAERQVSEARIEEIAAILG 62

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +    V  + +FY+ +   PVG R H+Q+C T  C L G +++ +    ++       ++
Sbjct: 63  LTATEVKGVMSFYSTYHERPVG-RYHLQLCSTLSCSLAGSDEMYDFLVTELGIVNGETDA 121

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           +G  S ++VEC G+C  AP++ +  D YE +T  R + +++A   G+    +P PQ +R
Sbjct: 122 EGLFSLQKVECLGSCGTAPVLQVNDDYYERVTRPRCQALLEALRGGE----QPEPQRER 176


>gi|323703025|ref|ZP_08114681.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532038|gb|EGB21921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 176

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P S   S E+   +++++++Y   +   A I +L + Q   G++ ++ +E ++ +     
Sbjct: 4   PDSLKLSAENFDAIDQIVNKYNSDK--GAAIMILQQVQATYGYIGQSMLERISQLTGTPT 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  I TFY+QF+L P+G    +QVC  T C L G E++ E  ++    KP H + DG 
Sbjct: 62  SELFSIVTFYSQFRLEPLGEN-FIQVCHGTACHLAGAERISEAVQHVTKAKPGHTSPDGK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            + E V C G C + P++ +  +T+  +TP+++++++
Sbjct: 121 FTLEHVACLGCCSHGPIMTLNNETFARMTPDKVKKML 157


>gi|190575274|ref|YP_001973119.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia K279a]
 gi|190013196|emb|CAQ46829.1| putative respiratory-chain NADH dehydrogenase I, 24 kDa subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 175

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|56478180|ref|YP_159769.1| NADH dehydrogenase subunit E [Aromatoleum aromaticum EbN1]
 gi|56314223|emb|CAI08868.1| NADH dehydrogenase I, chain E [Aromatoleum aromaticum EbN1]
          Length = 159

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S++S   ++  I++YPP + QSAV+  L  AQ + GW+++  IE VA  LDM  I   E
Sbjct: 2   LSQKSLQQIDREIAKYPPDQKQSAVMSALRIAQIEMGWLAKETIEFVAGYLDMPAIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG R  + VC   PC L G     +  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAADYVKQKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169
            EC GAC +AP++++        +T E++++++
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQLL 153


>gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP    +SA++PLL   Q ++G+VS   IE+ + +L ++   V  +ATFYTQ++ 
Sbjct: 18  EIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYKR 77

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G   +V VC T+ C + G +++ E   + +        +DG ++ E +EC  AC  A
Sbjct: 78  RPNG-EYNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDFA 136

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++M+  + +++ TP+   +++D    G 
Sbjct: 137 PVIMVNWEFFDNQTPQSAVKLVDDLRAGN 165


>gi|218662328|ref|ZP_03518258.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           IE4771]
          Length = 170

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 7/170 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            AP++ +G D + DL   R++ ++D   T  G         D  S+AP G
Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169


>gi|254468730|ref|ZP_05082136.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
 gi|207087540|gb|EDZ64823.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
          Length = 156

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 2/145 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++ + +YP  + QSAVI  L   Q   GW+S+  I  VA  LDM  I VLE+ATFY  F
Sbjct: 9   IDKELKKYPSDKKQSAVIAALAIMQNDRGWLSKEDISEVALYLDMPEIAVLEVATFYNMF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L  VG R  + +C    CMLR  + ++   + K+         DG    +E EC GAC 
Sbjct: 69  DLKSVG-RYKLSICTNISCMLRDADHIVNHLKEKLQIDFNEVTRDGKFCLKESECMGACG 127

Query: 146 NAPMVMI-GKDTYEDLTPERLEEII 169
            AP++ +  +  +E+L  +++++++
Sbjct: 128 GAPLLTVNNQKMHENLNIDKVDQLL 152


>gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D]
 gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D]
 gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 167

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
 gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
          Length = 167

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 3/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           S    S E    ++  ++++P    +SAVIP L  AQE  G W+SR  +E VA  L++  
Sbjct: 7   SEKHLSAEQRSEIDHWLAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPP 66

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+ TFY+ F L P G R  V +C    C+LRG E+++E   NK+        +DG 
Sbjct: 67  VAVYEVGTFYSMFDLKPTG-RHKVNICTNISCLLRGAERIVEHVENKLGISVGETTADGR 125

Query: 133 LSWE-EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ + E EC  AC  APM+++ ++ + DLTPE+++EI+D  
Sbjct: 126 ITLKGEEECLAACAAAPMMLVDEEYHVDLTPEKVDEILDKL 166


>gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum
           CFBP2957]
 gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CFBP2957]
          Length = 167

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
 gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
          Length = 295

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+E++     E+I+RYP  R +SA++PLL   Q +EG+VS + +E  A +L +   +V  
Sbjct: 4   FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  P G    V VC  T C + G +++ +     +        +DGT++ E 
Sbjct: 64  VATFYTMYKRKPTGDYL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTADGTVTLEH 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            EC  AC   P++ +  D ++ + P+    +++   +G
Sbjct: 123 AECLAACDYGPVMTVNYDFFDGVDPQTALGVVEELRSG 160


>gi|221068608|ref|ZP_03544713.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           KF-1]
 gi|264677202|ref|YP_003277108.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           CNB-2]
 gi|299530746|ref|ZP_07044161.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
 gi|220713631|gb|EED68999.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           KF-1]
 gi|262207714|gb|ACY31812.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           CNB-2]
 gi|298721262|gb|EFI62204.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
          Length = 163

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + QSAV+  L   Q+++GWVS+ +  V+A +L MA I V E+ TFY  +   P
Sbjct: 14  VAKYPADQKQSAVMACLSIVQQEQGWVSQESEAVIAEVLGMAEIAVHEVTTFYNMYNQQP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LR   K +    +K+  K      DG  + ++ EC GAC ++P+
Sbjct: 74  VG-KYKLNVCTNLPCQLRDGYKALHHLEHKLGIKMGETTKDGLFTLQQSECLGACADSPV 132

Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
           +++        ++ E+L+E++D     +G
Sbjct: 133 MLVNDRCMCSFMSNEKLDELVDGLRAAEG 161


>gi|296268277|ref|YP_003650909.1| NADH-quinone oxidoreductase subunit E [Thermobispora bispora DSM
           43833]
 gi|296091064|gb|ADG87016.1| NADH-quinone oxidoreductase, E subunit [Thermobispora bispora DSM
           43833]
          Length = 231

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP  R  SA++PLL   Q ++G++S    E  A  L +    VL +ATFYT +
Sbjct: 15  AKEIIARYPKPR--SALLPLLHLVQSEDGYISDDGAEFCAEQLGLTKAEVLGVATFYTMY 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G   +V VC  T C + G +++ E     +         DG ++ E +EC  AC 
Sbjct: 73  KREPAG-EYNVGVCINTLCAVMGGDQIWETLTEHLGIGHNETTPDGKITLERLECNAACD 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+V++  + +++ TPE  + ++D    G+G T   GP+
Sbjct: 132 YAPVVVVNWEFFDNQTPESAKRLVDDLRAGKGATPTRGPK 171


>gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
 gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
          Length = 170

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L+ AQ++ G +    +E VA+IL +  I V E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML G E L++     +  +      +   +   VEC GAC 
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCGSEALLKHLETVLEIRKGDTTPNRLFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            AP++ +G D + +L   RL+ ++D      G  I
Sbjct: 124 MAPVMQVGDDYHGNLDTGRLDALLDRLRAEAGQVI 158


>gi|218674604|ref|ZP_03524273.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           GR56]
          Length = 170

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 7/170 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I + E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWIYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            AP++ +G D + DL   R++ ++D   T  G         D  S+AP G
Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169


>gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
 gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
          Length = 167

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKQKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEII 169
            EC GAC +AP VMI  +T+    ++ E+L+ +I
Sbjct: 121 GECMGACGDAP-VMIVNNTHMCSFMSNEKLDALI 153


>gi|298246354|ref|ZP_06970160.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553835|gb|EFH87700.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 172

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   + E+  RYP +R  SAV+P L  AQE+EG+++RA +E VA  + M    V  
Sbjct: 2   ISEKAKERMRELAKRYPAAR--SAVMPSLYIAQEEEGYITRAGLEAVAEAVGMTIDDVES 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT +     G +  V+VC +  C LR C+ ++E    ++  K      DG  + + 
Sbjct: 60  VATFYTMYHKQAPGKKI-VKVCTSISCYLRNCDSVMEHLEQRLGIKRGETTPDGNFTLQG 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
           VEC   C  AP++ +     E++T E+ + +ID         ++ G Q++   S 
Sbjct: 119 VECLATCGYAPVIQVNGQFVENVTLEKADALIDDLER----ELKQGKQVNESKSG 169


>gi|217970160|ref|YP_002355394.1| NADH dehydrogenase subunit E [Thauera sp. MZ1T]
 gi|217507487|gb|ACK54498.1| NADH-quinone oxidoreductase, E subunit [Thauera sp. MZ1T]
          Length = 159

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  I++YPP + QSAV+  L  AQ ++GW+ +  IE VA  L M  I   E
Sbjct: 2   LSQESLQQIDREIAKYPPDQTQSAVMAALRIAQVEKGWLPKELIEFVARYLGMPPIAAFE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L+PVG R  + VC   PC L G     +  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLAPVG-RHKITVCTNLPCALSGGVHAADYIKEKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTYED-LTPERLEEII 169
            EC GAC +AP++++        +T E++++++
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQML 153


>gi|254172735|ref|ZP_04879409.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
           AM4]
 gi|214032891|gb|EEB73719.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
           AM4]
          Length = 154

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           + ++ YPP    S++IPLL R QE+ G++ R  +E +A  L +   RV  +ATFY QF+ 
Sbjct: 6   DYLTSYPPE--PSSLIPLLQRTQERFGYLPREVLERIAEYLGIPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G +  V++C  T C + G   +++    ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLG-KYVVRICHGTACHVNGAVTIVQAITEELGIEEGQTTEDGLITLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           P+VMI    +  LTP+++ ++I     G+ D 
Sbjct: 123 PVVMINDKVFGKLTPDKVRKLIRKLREGKLDV 154


>gi|182412306|ref|YP_001817372.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
 gi|177839520|gb|ACB73772.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
          Length = 162

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 3/143 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++EVI+ YP  R  SA +PLL   QE  G++   A E +A  L++  I V E+ TFY  F
Sbjct: 11  IDEVITHYPTKR--SATLPLLHLIQEDIGYIPAEAHEWIAAKLEIQPINVYEVVTFYPMF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P+G R HV+VC T  C LRG  K+ E    + + K    + DG ++ E VEC  +C 
Sbjct: 69  RQKPIGRR-HVKVCRTLSCALRGGYKVCEQFEKEFNTKTGEISPDGEVTVEFVECLASCG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168
            AP+VMI  D +E++   + +++
Sbjct: 128 TAPVVMIDDDLHENVDAAKAKQL 150


>gi|294630800|ref|ZP_06709360.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
 gi|292834133|gb|EFF92482.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
          Length = 293

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++P+L   Q +EG V+R  +   A++L +    V  +ATFYT ++ 
Sbjct: 39  EIIARYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCADVLGLTTAEVTAVATFYTMYRR 96

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + L E  +  +         DG ++ E +EC  AC  A
Sbjct: 97  KPSGDY-QVGVCTNTLCAVMGGDALFETLQEHLGVGNGETTDDGKVTLEHIECNAACDFA 155

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP  ++ ++D    G+
Sbjct: 156 PVVMVNWEFFDNQTPASVKRLVDDLRAGR 184


>gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas
           sp. 3As]
          Length = 170

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE +   ++  +++YPP + QSAVI  L   Q+++GWVS  A + VA+ L M  I V E
Sbjct: 6   LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  F   PVG R  + VC   PC L G E   +    K+         DG  + +E
Sbjct: 66  VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 124

Query: 138 VECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170
            EC GAC +AP +++  +     + PERL+ +++
Sbjct: 125 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVE 158


>gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
 gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
          Length = 179

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE +   ++  +++YPP + QSAVI  L   Q+++GWVS  A + VA+ L M  I V E
Sbjct: 15  LSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAVHE 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  F   PVG R  + VC   PC L G E   +    K+         DG  + +E
Sbjct: 75  VVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTLQE 133

Query: 138 VECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170
            EC GAC +AP +++  +     + PERL+ +++
Sbjct: 134 SECLGACGDAPAMLVNDRRLCSFMRPERLDALVE 167


>gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
 gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
          Length = 262

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 5/169 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FS E+     E+I+RYP  R +SA++PLL   Q ++G V+   +   A++L +    V
Sbjct: 1   MAFSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C L G E + E     +         DG+++ 
Sbjct: 61  GAVATFYTMYKRHPVGDYL-VSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPDGSITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           E  EC  AC  AP++ +  + Y+ + P+  + I++    G+    RP P
Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGR----RPAP 164


>gi|315654701|ref|ZP_07907607.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
           51333]
 gi|315491165|gb|EFU80784.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
           51333]
          Length = 233

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP    +SA++PLL   Q ++G+VS   IE+ + +L ++   V  +ATFYTQ++ 
Sbjct: 18  EIIARYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYKR 77

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G   +V VC T+ C + G +++ E   + +        +DG ++ E +EC  AC  A
Sbjct: 78  RPNG-EYNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDFA 136

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++M+  + +++ TP+   +++D    G 
Sbjct: 137 PVIMVNWEFFDNQTPQSAVKLVDDLRAGN 165


>gi|125972859|ref|YP_001036769.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           ATCC 27405]
 gi|256005729|ref|ZP_05430684.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 2360]
 gi|125713084|gb|ABN51576.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Clostridium thermocellum ATCC
           27405]
 gi|255990302|gb|EEU00429.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 2360]
 gi|316940903|gb|ADU74937.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 1313]
          Length = 165

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +NE+I +Y  ++   A++P+L  AQE  G++     + +A  L++    V  + TFYTQF
Sbjct: 19  LNEIIEKYKNTK--GALVPVLHEAQEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFYTQF 76

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G +  +QVC  T C ++G   ++E  + K+        SDG  S E   C GAC 
Sbjct: 77  SLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIGACG 135

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++MI  D Y  L P+ +E II+ +
Sbjct: 136 LAPVIMINDDVYGRLVPDDIEGIIEKY 162


>gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
 gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
          Length = 307

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           VR  A EE+ P   +  +  A   + VI RYP SR  SA++PLL   Q ++G ++ A IE
Sbjct: 27  VRPGAREEYPPEVGARLDADA---DVVIGRYPNSR--SALLPLLHLVQAEDGCITPAGIE 81

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A  L +    V  +ATFY+ ++  P G   +V VC  T C + G + ++      +  
Sbjct: 82  FCAGRLGLTGAEVAAVATFYSMYRRDPTGDY-YVGVCTNTLCAIMGGDAILAALEEHLDL 140

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                ++DG ++ E +EC  AC  AP+VM+  + +++ TPE    ++D+  +G+
Sbjct: 141 PHGGTSADGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPESARSLVDSLRSGE 194


>gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147]
 gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786]
          Length = 161

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVGT   + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVGTH-KITLCTNLPCQLGPHGGAEATAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160


>gi|269128609|ref|YP_003301979.1| NADH-quinone oxidoreductase subunit E [Thermomonospora curvata DSM
           43183]
 gi|268313567|gb|ACY99941.1| NADH-quinone oxidoreductase, E subunit [Thermomonospora curvata DSM
           43183]
          Length = 240

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP  R  SA++PLL   Q  +G ++   IE  A  L +   +V  +ATFYT +
Sbjct: 15  AKEIIARYPKPR--SALLPLLHLVQSVDGHITSDGIEFCAEQLGITPAQVTGVATFYTMY 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG   HV VC  T C + G +++ E     +         DG +S E +EC  AC 
Sbjct: 73  KHKPVG-EYHVGVCINTLCAVMGGDQIWEELSEYLGVGHDEATEDGKISLERLECNAACD 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + ++++TPE+ ++++D    G+      GP+
Sbjct: 132 YAPVVMVNWEFFDNMTPEKAKQLVDDLRAGKEVAPTRGPK 171


>gi|253996969|ref|YP_003049033.1| NADH-quinone oxidoreductase subunit E [Methylotenera mobilis JLW8]
 gi|253983648|gb|ACT48506.1| NADH-quinone oxidoreductase, E subunit [Methylotenera mobilis JLW8]
          Length = 157

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + Q+AV+  L   Q + GW+S+ +I  VA  L M  I  +E
Sbjct: 2   LSPEATTKIDYELTKYPADQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + LSPVG +  V +C    CMLRG ++++   ++K+         DG    +E
Sbjct: 62  VATFYNMYDLSPVG-KYKVTICTNISCMLRGSDEIVNHLQSKLGVGFNEVTPDGKFCLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            EC G C  AP++ +   + +E LT ++++ II+  
Sbjct: 121 GECMGCCGGAPLMHVNNTEMHEFLTTDKVDAIIEGL 156


>gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 293

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EVI+RYP SR  SA++PLL   Q +EG+VSR  +   A+ L +    V  +ATFYT +
Sbjct: 32  AKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCADQLGLTTAEVTAVATFYTMY 89

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + +  +  +         DG ++ E +EC  AC 
Sbjct: 90  RRRPSGDY-QVGVCTNTLCAVMGGDAIFDRLKEHLGVGNDETTDDGKVTLEHIECNAACD 148

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            AP+VM+  + +++ TPE    ++D    G+  T+ P
Sbjct: 149 FAPVVMVNWEFFDNQTPESATRLVDDLIAGR--TVEP 183


>gi|326382759|ref|ZP_08204449.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
 gi|326198349|gb|EGD55533.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
          Length = 227

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           VI+RYP  R  SA++PLL   Q  +G+++RA +   A  L +   +V  +ATFY+ ++  
Sbjct: 48  VIARYP--RSGSALLPLLHLVQSHDGYLTRAGVAFCAEQLGLTAAQVASVATFYSMYRRE 105

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + ++      +  +P     DG ++ E VEC  AC  AP
Sbjct: 106 PTGDYL-VGVCTNTLCAVMGGDAILSELTETLGIRPGETTPDGRVTLEHVECNAACDFAP 164

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           +VM+  + ++D TP+  + ++D   +G       GP+I
Sbjct: 165 VVMVNWEFFDDQTPDSAKALVDDLRSGVPRAPSRGPEI 202


>gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 233

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++I+RYP    +SA++P+L   Q  +G+VS   I++++ ILD+    +  +ATFYTQ++ 
Sbjct: 17  QIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLPRAEISAVATFYTQYKR 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC    C + G +++ E    K+       +  G ++ E +EC  AC  A
Sbjct: 77  HPTGDYL-VGVCTNALCAVMGGDEIWERVSAKVGVGSDETSESGRITLERIECNAACDYA 135

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           P+VM+  + +++ TPE    +ID    G+      GP +
Sbjct: 136 PVVMVNWEFFDNQTPESALALIDDIEAGRDIHPTRGPAV 174


>gi|71906592|ref|YP_284179.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
 gi|71846213|gb|AAZ45709.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
          Length = 157

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+       +++YP  + QSA +  L  AQE++GW++  +IE VAN L M  I   E
Sbjct: 2   FSAETLQKFAREVAKYPADQKQSASMACLAHAQEEKGWLAPESIEAVANYLGMPPIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG +  + VC   PC L G     E  ++K+         DG  + +E
Sbjct: 62  VASFYNMYDLKPVG-KYKITVCTNLPCALSGGYHAGEYLQHKLGVGYGETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170
            EC GAC +AP+ ++  +     + PE+++++++
Sbjct: 121 GECMGACGDAPVFIVNNRSMCSHMHPEQIDKLLE 154


>gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134]
 gi|72118081|gb|AAZ60344.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 168

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ LDM  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-RFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEIID 170
            EC GAC +AP VMI  +T     ++ ++L+ ++D
Sbjct: 123 GECMGACGDAP-VMIVNNTRMCSFMSDDKLDALVD 156


>gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus]
          Length = 155

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 22  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 81

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 82  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 140


>gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1]
          Length = 255

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFYT ++ 
Sbjct: 30  EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEVTAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 88  KPSGDY-QVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLEHIECNAACDYA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           P+VM+  + +++ T +  E ++D    G+  T+ P
Sbjct: 147 PVVMVNWEFFDNQTVDSAERMVDDLRAGR--TVEP 179


>gi|291296252|ref|YP_003507650.1| NADH-quinone oxidoreductase E subunit [Meiothermus ruber DSM 1279]
 gi|290471211|gb|ADD28630.1| NADH-quinone oxidoreductase, E subunit [Meiothermus ruber DSM 1279]
          Length = 188

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+NEV ++YP  R  +A++P+L R Q+ EGW+S    E +A IL +    V
Sbjct: 6   MGFFDDKQDWLNEVFAQYPDRR--AALMPMLRRVQQDEGWISPERQEEIARILGITATEV 63

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +Q  P G + H+QVC T  C + G ++L +     +         DG  S 
Sbjct: 64  AGVMSFYSYYQALPTG-KYHLQVCATLSCAIGGADELWDELVETLGILRGEVTPDGLFSI 122

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP++ +  + Y E +T  RL  ++     G+
Sbjct: 123 QKVECLGSCHTAPVIQVNDEPYVECVTKARLHALLQGLREGK 164


>gi|187477545|ref|YP_785569.1| NADH dehydrogenase subunit E [Bordetella avium 197N]
 gi|115422131|emb|CAJ48655.1| NADH dehydrogenase I chain E [Bordetella avium 197N]
          Length = 164

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 3/154 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  ++++P  + QSA++  L  AQE++GW+S   IE VA  + +A I V E+ATFY  F
Sbjct: 11  IDRELAKFPADQRQSAIMASLAIAQEEKGWLSAEIIEDVAKYIGVAPIAVQEVATFYNMF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            + PVG    + VC   PC LR  EK  E  + K+        +DG  +  E EC GAC 
Sbjct: 71  DVKPVGVH-KIAVCTNLPCALRDGEKAGEYLKRKLGVGYRETTADGKFTLIEGECMGACG 129

Query: 146 NAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGD 178
           +AP++++  K     ++ ++L+ ++D   + QG+
Sbjct: 130 DAPVLIVNNKHMCVRMSEQKLDALVDGLKS-QGE 162


>gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium marinum M]
 gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium marinum M]
          Length = 251

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A + + P + +  E   I   E+I RYP  R  SA++PLL   Q ++ +++ A ++  AN
Sbjct: 28  APQAYSPDALARLE---IEAKEIIGRYPDQR--SALLPLLHLVQGEDSYLTPAGLQFCAN 82

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            L +    V  +A+FYT ++  P G    V VC  T C + G + + E  ++ +      
Sbjct: 83  QLGLTGAEVSAVASFYTMYRRGPTGEYL-VGVCTNTLCAVMGGDAIFETLKDHLGVGNDE 141

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             SDG+++   +EC  AC  AP+VM+  + +++ TPE   E++D+  +G+
Sbjct: 142 TTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSGE 191


>gi|148657774|ref|YP_001277979.1| NADH-quinone oxidoreductase subunit E [Roseiflexus sp. RS-1]
 gi|148569884|gb|ABQ92029.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus sp. RS-1]
          Length = 174

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 4/155 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S  E+    +  +I+RYP     SAV+PLL  AQ++ G+++ AA+  VA +LDM    V
Sbjct: 1   MSLIEKHGAEIEAIIARYPHK--PSAVLPLLFIAQDEYGYLTEAAMREVAELLDMPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FY+     PVG    +QVC   PC   G E LI   + K+         DG  + 
Sbjct: 59  FEVAGFYSLLYEQPVGKWV-LQVCDDVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEII 169
           + V+C   C +AP++    + Y DL TPE++E+++
Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVEQVL 152


>gi|187736102|ref|YP_001878214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426154|gb|ACD05433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 12/175 (6%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E F P+ F  + E     +E ++ YP  + +SAV+P+L   Q++ G++S  AI  V   L
Sbjct: 21  ERFYPA-FEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAWVGEKL 79

Query: 69  DMAYIRVLEIATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VC------RNKI 120
           +++   VL + TFY    Q+ P   + H++VC T  C + G + L + +C      +N I
Sbjct: 80  NISAAHVLGVVTFYPGLRQMCP--GKNHIRVCRTLSCAMAGADSLFDAICTRLGIDKNGI 137

Query: 121 -HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            H  P+  + DG  S E VEC   C   P +M+    YE +TPE LEE+I  + T
Sbjct: 138 DHHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQT 192


>gi|297625186|ref|YP_003706620.1| NADH-quinone oxidoreductase subunit E [Truepera radiovictrix DSM
           17093]
 gi|297166366|gb|ADI16077.1| NADH-quinone oxidoreductase, E subunit [Truepera radiovictrix DSM
           17093]
          Length = 191

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E++ RYP    +SAV+PLL   Q  E  +S A IE +A IL +    V  + +FY+ +
Sbjct: 18  LSEILGRYPEYGRRSAVMPLLWEVQRAERHISEARIEEIAEILGLHATEVKGVMSFYSTY 77

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG + H+Q+C T  C L G +++ +    +        + +G  S ++VEC G+C 
Sbjct: 78  HELPVG-KYHLQICATLSCSLAGADEMYDFISEETGLVSGETDREGLFSLQKVECLGSCG 136

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            AP++ +    YE +TP R + ++ A   G+     P P  +R
Sbjct: 137 TAPVLQVNDTFYERVTPSRCKALLAALRRGE----EPAPWRER 175


>gi|297625732|ref|YP_003687495.1| NADH-quinone oxidoreductase chain E [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921497|emb|CBL56051.1| NADH-quinone oxidoreductase chain E [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S + +EE+   +  + +RYP +R  SA++P+L   Q  +G VS A +  VA I  +   +
Sbjct: 22  STNITEETMAEMRAIAARYPDAR--SALMPMLHLVQSVDGRVSDAGMRAVAEIAGVNTAQ 79

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G + H+ VC T  C + G + L+     K+         DG  S
Sbjct: 80  VNGVATFYTMYKRRPAGHQ-HIGVCTTALCAVMGGDILLSHVEKKLGIHEGETTPDGKFS 138

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            E +EC   C  AP++M+  +  +++TP + +E++D  + G+
Sbjct: 139 LERLECNAGCDFAPVMMVNWEYMDNMTPAKADELLDKLAAGE 180


>gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 235

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 1/149 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  L++    +  +ATFYTQ++ 
Sbjct: 17  QIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELPRAEISAVATFYTQYKR 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC    C + G +++ E   +K+       ++DG ++ E +EC  AC  A
Sbjct: 77  HPTGDYL-VGVCTNALCAVMGGDEIWEKVSDKVGVGSDETSADGRITLERIECNAACDYA 135

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE    +ID    G+
Sbjct: 136 PVVMVNWEFFDNQTPESAAAMIDDIQEGR 164


>gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 174

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YPP + QSAV+  L   Q+++GWVS  +  V+A +L M  I V E+ TFY  +   P
Sbjct: 25  VAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIAEVLGMPQIAVHEVTTFYNMYNQQP 84

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G +  + VC   PC LR  +K +     K+         DG  + ++ EC GAC +AP+
Sbjct: 85  LG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGIAMGETTPDGLFTLQQCECLGACADAPV 143

Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
           +++   T    +  E+L++++D     +G
Sbjct: 144 MLVNDRTMCSFMDNEKLDQLVDGLRQAEG 172


>gi|256831783|ref|YP_003160510.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
           20603]
 gi|256685314|gb|ACV08207.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
           20603]
          Length = 269

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ RYP +R  SA++P+L   Q  +G+V+R  I+  A+ LD+    V  +ATFYTQ++  
Sbjct: 30  IMGRYPNAR--SALLPMLHLVQSVDGYVTRRGIQFCADQLDLTAAEVSAVATFYTQYKRR 87

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + + E     +         DG ++ E VEC   C  AP
Sbjct: 88  PNGDYT-VGVCTNTLCAVMGGDAIYEELSTYLGIGHDETTDDGKITLERVECNAGCDYAP 146

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           +VM+  + +++ TP+ +++I+D    G   T   GP
Sbjct: 147 VVMVNWEFFDNQTPDSMKKIVDELRLGNDVTPSRGP 182


>gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
 gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
          Length = 164

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V E
Sbjct: 3   LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVG +  + VC   PC LR  ++  E  + K+        +DG  +  E
Sbjct: 63  VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGDRAGEYLKRKLGVDYRQTTADGQFTLVE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC ++P++++  K     +T E+L+ ++ A    QG++
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTDEKLDALVAALKV-QGES 163


>gi|262195155|ref|YP_003266364.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
           14365]
 gi|262078502|gb|ACY14471.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
           14365]
          Length = 172

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S   FS E+   ++ +  RYP    Q  V+  L  AQ++ G +S  A+ VVA  L++ Y 
Sbjct: 8   SPLEFSAEARQKIDALSQRYPTK--QPVVLAALHLAQKEFGHLSDDALRVVAKTLELPYP 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFYT F+  P G    ++VC    CMLRG   ++E    ++  K    +S G  
Sbjct: 66  HVYGVATFYTMFRRQPAGKNV-LRVCTNISCMLRGAYDVLEAFEKRLGIKV--GDSSGDF 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              E EC  AC NAP V+ G   + D+ P +++EIID
Sbjct: 123 HLVEEECIAACANAPAVICGTKYFLDVEPSQVDEIID 159


>gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99]
 gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium ulcerans Agy99]
          Length = 251

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A + + P + +  E   I   E+I RYP  R  SA++PLL   Q ++ +++ A ++  AN
Sbjct: 28  APQAYPPDALARLE---IEAKEIIGRYPDQR--SALLPLLHLVQGEDSYLTPAGLQFCAN 82

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            L +    V  +A+FYT ++  P G    V VC  T C + G + + E  ++ +      
Sbjct: 83  QLGLTGAEVSAVASFYTMYRRGPTGEYL-VGVCTNTLCAVMGGDAIFETLKDHLGVGNDE 141

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             SDG+++   +EC  AC  AP+VM+  + +++ TPE   E++D+  +G+
Sbjct: 142 TTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSGE 191


>gi|119714788|ref|YP_921753.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
 gi|119535449|gb|ABL80066.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
          Length = 263

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S ++E+   + E+ +RYP  R  S ++P+L   Q  EG ++   IE  A++L +    V
Sbjct: 1   MSLTQETYGELQEIAARYPEPR--SGLLPMLHLVQSAEGRITPEGIEACADLLGVTAAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG   HV VC  T C + G + + +  ++ +         DG ++ 
Sbjct: 59  SGVATFYTMYKRRPVGDY-HVGVCTNTLCAVMGGDAIFDRLKSDLGVGNDETTEDGKITL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--------- 186
           E +EC  AC  AP++M+  +  +++TP+    IID    G       GP+I         
Sbjct: 118 EHIECNAACDYAPVMMVNWEFMDNMTPDTAARIIDDLRAGNEVHSTRGPRIVTWREAERV 177

Query: 187 ------DRISSAPAGGLTSLL 201
                 D     PA G  SL+
Sbjct: 178 LAGFPDDLADEGPAAGRASLV 198


>gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
 gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
          Length = 286

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG V+R  +   A++L +    V  +ATFY+ ++ 
Sbjct: 36  EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAEVTAVATFYSMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 94  RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTLEHIECNAACDFA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE  + ++D    G+
Sbjct: 153 PVVMVNWEFFDNQTPESAKRMVDDLRAGR 181


>gi|157779398|gb|ABV71242.1| NADPH-dependent sulfur oxidoreductase A subunit [Thermococcus
           litoralis DSM 5473]
          Length = 154

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E I  Y P+   S++IPLL + QE  G++ R A+E ++  L +   RV  +ATFY QF+ 
Sbjct: 6   EYIYNYEPN--PSSLIPLLQKTQEIFGYLPREALEEISKYLKLPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G    +++C  T C + G   + +  + ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLGKYV-IKICHGTACHVNGAVNISQAIKEEVGVEEGQTTQDGLITLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++MI    +  LTPE++ +II     G+
Sbjct: 123 PVIMINDKVFGKLTPEKVRKIIKNLKEGK 151


>gi|319943352|ref|ZP_08017634.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
           51599]
 gi|319743167|gb|EFV95572.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
           51599]
          Length = 173

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     S ++   ++  I++YP  + QSAV+  L  AQ++ GWVS A IE VA+ L M  
Sbjct: 8   PVKRLLSAQAYQLIDREIAKYPADQKQSAVMGALTIAQDEVGWVSPAVIEDVADYLSMPP 67

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFY  + L  VGT   + VC   PC LR  +K  E  + K+         DG 
Sbjct: 68  IAVYEVATFYNMYNLEEVGTW-KIGVCTCLPCALREGDKAGEYLKQKLGIDFGETTPDGR 126

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIID 170
            +  E EC G+C +AP+ +I     E      +L+ +ID
Sbjct: 127 FTLIETECLGSCADAPICLINDKRVESFMDNAKLDALID 165


>gi|223937080|ref|ZP_03628988.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
 gi|223894361|gb|EEF60814.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
          Length = 178

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 7/148 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +NE+++ YP  R  SA +  L   QE  G+VS+ AIE +A  L++  I V E+ TFY  F
Sbjct: 30  LNELVTHYPVKR--SASLMFLHAIQEHFGYVSKEAIEWIAKKLELQPINVYELVTFYPMF 87

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQ 141
           +  P G +  ++VC T  C L G  KL +    K+    H   +    DG  S E VEC 
Sbjct: 88  RQEPAG-KHQIKVCRTLSCALGGSHKLHKYFCEKLGLDSHAHGVQTTKDGKYSVEFVECL 146

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169
            +C  AP++M  +D YE +T ++ +EI+
Sbjct: 147 ASCGTAPVMMCNEDFYEGVTNQKADEIL 174


>gi|296130547|ref|YP_003637797.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022362|gb|ADG75598.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
           20109]
          Length = 294

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+++RYP +R  SA++P+L   Q ++G+VS   I   A++L ++   V  +ATFYTQ+
Sbjct: 38  AQEIVARYPQAR--SALLPMLHLVQSEDGYVSPRGIAFCASVLGISTAEVSAVATFYTQY 95

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P GT   V VC  T C + G + + E     +         DG ++ E VEC  AC 
Sbjct: 96  KRHPNGTYT-VGVCTNTLCAVMGGDAIWEELSEHLGIGHDETTPDGAITLERVECNAACD 154

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP+VM+  + +++ TP    +++D  + G+
Sbjct: 155 YAPVVMVNWEFFDNQTPASAVDVVDRLAAGE 185


>gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
 gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
          Length = 345

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E+     E+I+RYP  R +SA++PLL   Q +EG+VS A +   A +L +   +V  
Sbjct: 5   FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  P G    V VC  T C + G +++ +     +         DG ++ E 
Sbjct: 65  VASFYTMYKRRPTGDYL-VSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTEDGKITLEH 123

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            EC  AC   P++ +  D ++ + P+    ++D    G     RP P
Sbjct: 124 AECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGN----RPTP 166


>gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
 gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
          Length = 161

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   +E VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160


>gi|317401992|gb|EFV82592.1| respiratory-chain NADH dehydrogenase I [Achromobacter xylosoxidans
           C54]
          Length = 164

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V E
Sbjct: 3   LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATDIIEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVG +  + VC   PC LR  E+  +  + K+        +DG  +  E
Sbjct: 63  VATFYNMFDVKPVG-KTKIAVCTNLPCALRDGERAGDYLKRKLGVDYRETTADGQFTLVE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC ++P++++  K     +T E+L+ ++ A    QG++
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALK-AQGES 163


>gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase chain E [Burkholderia rhizoxinica HKI
           454]
 gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 165

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP    QSAV+  L  AQ ++GW+S   ++ VA+ L M  I V E+
Sbjct: 10  SAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQEV 69

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYT ++ +PVG +  + +C   PC L G ++  E  + K+         DG  + +E 
Sbjct: 70  ATFYTMYETAPVG-QHKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEG 128

Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           EC GAC +AP+V++        ++ E+++++++  S
Sbjct: 129 ECFGACGDAPVVLLNNHRMCSFMSREKIDQLLEELS 164


>gi|281417058|ref|ZP_06248078.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           JW20]
 gi|281408460|gb|EFB38718.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           JW20]
          Length = 165

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +NE+I +Y  ++   A++P+L  A+E  G++     + +A  L++    V  + TFYTQF
Sbjct: 19  LNEIIEKYKNTK--GALVPVLHEAEEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFYTQF 76

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G +  +QVC  T C ++G   ++E  + K+        SDG  S E   C GAC 
Sbjct: 77  SLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIGACG 135

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++MI  D Y  L P+ +E II+ +
Sbjct: 136 LAPVIMINDDVYGRLVPDDIEGIIEKY 162


>gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
 gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
          Length = 256

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++RYP +R  SA++PLL   Q ++G ++ A IE  A ++D++   V+ +ATFY+ ++ +
Sbjct: 43  IVARYPQAR--SALLPLLHLVQAEDGHLTPAGIEFCALVVDLSPAEVMAVATFYSMYRRT 100

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G +++    R+ +         DG ++ E +EC  AC  AP
Sbjct: 101 PTGDYL-VGVCTNTLCAVMGGDEIYADLRDHLGLDGPGTTDDGRITLERIECNAACDYAP 159

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +VMI  + ++D TP+    ++D    G+
Sbjct: 160 VVMINWEFFDDQTPDSARRVVDDLRAGR 187


>gi|291280353|ref|YP_003497188.1| NADH-quinone oxidoreductase subunit E [Deferribacter desulfuricans
           SSM1]
 gi|290755055|dbj|BAI81432.1| NADH-quinone oxidoreductase, E subunit [Deferribacter desulfuricans
           SSM1]
          Length = 171

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+ + Y   +   A IP+L + QE  G++S+  ++ +A  L+M+   +  + TFY QF
Sbjct: 23  IDEICAEYKGRK--GATIPVLQKVQEHYGYLSKEMVDRIAENLNMSPHTIYGVITFYAQF 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             +P G    ++VC  T C ++G  ++ EV   +   K    +SD   + EEV C GAC 
Sbjct: 81  YTTPRGKYV-IRVCRGTACHVKGSGRISEVVTEEFGIKNGETSSDLKFTLEEVSCIGACG 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP++MI   TY +LTPE+  EI   ++
Sbjct: 140 MAPVIMINDKTYGNLTPEKAREIFREYA 167


>gi|218459738|ref|ZP_03499829.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Kim
           5]
          Length = 164

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            AP++ +G D + DL   R++ ++D   T
Sbjct: 124 MAPVMQVGDDYHGDLDIARIDALLDRLRT 152


>gi|86359330|ref|YP_471222.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
 gi|86283432|gb|ABC92495.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
          Length = 172

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 5   IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 63  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLGACE 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            AP++ +G D + DL   R++ ++D   T
Sbjct: 122 MAPVMQVGDDYHGDLDIARIDALLDRLRT 150


>gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
 gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
          Length = 236

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 1/149 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  LD+    +  +ATFYTQ++ 
Sbjct: 17  QIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRAEISAVATFYTQYKR 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC    C + G +++ E    K+       + DG ++ E +EC  AC  A
Sbjct: 77  HPTGEYL-VGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDGKITLERIECNAACDYA 135

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ +PE    +ID    G+
Sbjct: 136 PVVMVNWEFFDNQSPESALAMIDDIQAGR 164


>gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1]
 gi|237877333|gb|ACR29666.1| ATP synthase subunit E [Burkholderia glumae BGR1]
          Length = 161

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++ V+++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  S 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFSL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160


>gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798275|gb|EDN80695.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  LD+    +  +ATFYTQ++
Sbjct: 16  TQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLPRAEISAVATFYTQYK 75

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G    V VC    C + G +++ E    K+       + DG ++ E +EC  AC  
Sbjct: 76  RHPTGEYL-VGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDGKITLERIECNAACDY 134

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           AP+VM+  + +++ +PE    +ID    G+
Sbjct: 135 APVVMVNWEFFDNQSPESALAMIDDIQAGR 164


>gi|311744396|ref|ZP_07718198.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
           15272]
 gi|311312362|gb|EFQ82277.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
           15272]
          Length = 262

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E+  RYP +R  S ++P+L   Q  +G V+   IE  A IL ++   V  +ATFYT +
Sbjct: 12  LREIAGRYPEAR--SGLLPMLHLVQSVQGHVTTEGIETCAEILGLSPAEVSGVATFYTMY 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P+GT  HV VC  T C + G + ++E  +  +        +DG ++ E +EC  AC 
Sbjct: 70  KRRPMGTH-HVGVCTNTLCAVMGGDAILERLQEHLDVANDETTADGAVTLEHLECNAACD 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP++M+  + ++  TPE   +++D    G+
Sbjct: 129 FAPVMMVNWEFFDHQTPESAVDLVDRLRAGE 159


>gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003]
 gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003]
          Length = 161

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160


>gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1]
 gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1]
          Length = 175

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YPP + QSAV+  L   Q+++GWVS  +  V+A+ L M  I V E+ TFY  +   P
Sbjct: 26  VAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEVTTFYNMYNQQP 85

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G +  + VC   PC LR  +K +     K+         DG  + ++ EC GAC +AP+
Sbjct: 86  LG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGITMGETTPDGLFTLQQCECLGACADAPV 144

Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
           +++   T    +  E+L++++D     +G
Sbjct: 145 MLVNDRTMCSFMDNEKLDQLVDGLRQAEG 173


>gi|115375220|ref|ZP_01462486.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|310818919|ref|YP_003951277.1| NADH dehydrogenase I subunit E [Stigmatella aurantiaca DW4/3-1]
 gi|115367782|gb|EAU66751.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|309391991|gb|ADO69450.1| NADH dehydrogenase I, E subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 162

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E++S YPP R  + ++P L   Q+ +GW     I +VA  L++   R  E+A+FY  +
Sbjct: 18  ISEILSHYPPDRKSAGMLPALRLLQDLKGWCPPEGIRLVAKNLEVTPERAYEVASFYVMY 77

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L   G +  + VC    C LRG EK++    NK+  K    N   T +  E EC  +C 
Sbjct: 78  HLKKPG-KYTIDVCTNLSCSLRGAEKMLAYLENKLGLKAGEANE--TFTLRETECLASCG 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP + + +D +E+LT  R++E++
Sbjct: 135 TAPCLQVNEDHHENLTKARVDELL 158


>gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424]
 gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus
           taiwanensis LMG 19424]
          Length = 167

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VAN L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KYKLTVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 123 GECMGACGDAPVMIV 137


>gi|242399494|ref|YP_002994919.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
           MM 739]
 gi|242265888|gb|ACS90570.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
           MM 739]
          Length = 154

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E I  Y P+   S++IPLL + QE  G++ + A+E ++  L +   RV  +ATFY QF+ 
Sbjct: 6   EYIYHYEPN--PSSLIPLLQKTQETFGYLPKEALEEISRYLKVPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G    +++C  T C + G   + +  R ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLGKYV-IKICHGTACHVNGAVNISQAIREEVGIEEGQTTVDGLITLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++MI +  Y  LTP+++ +II     G+
Sbjct: 123 PVIMINEKVYGKLTPDKVRKIIRNLKEGK 151


>gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. SIP3-4]
 gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688]
 gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. SIP3-4]
 gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688]
          Length = 157

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  +++YP  R Q+AV+  L  AQ+++GW+S+  +  VA  L +  I  LE
Sbjct: 2   LSQESLAKIDRELTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  ++L PVG +  + VC    CMLR  + +++  + ++         DG  + +E
Sbjct: 62  VASFYNMYELEPVG-QYKITVCTNISCMLRDSDVIVDHLQERLGIGFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170
            EC G C  AP+  I  K   E LT E+++ I++
Sbjct: 121 GECMGCCGGAPLFHINNKRMCEFLTKEKVDAILE 154


>gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
           DSM 44928]
 gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 228

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 3/160 (1%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + +++RYP S   SA++PLL   Q +EG+VS A IE  A  L ++   V  ++TFYT ++
Sbjct: 18  DAIVARYPQS--GSALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMYK 75

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             PVG   HV VC  T C + G + +    +  +         DG ++ E +EC  AC  
Sbjct: 76  RRPVGDY-HVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHIECNAACDF 134

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           AP++ +  +  +D+ P++   ++D    G+      GP +
Sbjct: 135 APVMTVNWEFLDDMNPDKAVRVVDELRAGKEVHSTRGPAL 174


>gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 162

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           ++ FS+ES      +I ++P  R  S ++P L   Q  +G+V    ++ +A+ +   ++ 
Sbjct: 2   AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT +   PVG + H+Q+C    C L G + + E   +K+  K      D  
Sbjct: 60  AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            + +EV+C GAC   P+  I    YE+LTPE +E+I+
Sbjct: 119 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKIL 155


>gi|227874588|ref|ZP_03992751.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269977612|ref|ZP_06184579.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
 gi|306817872|ref|ZP_07451611.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
           35239]
 gi|307701384|ref|ZP_07638405.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
           FB024-16]
 gi|227844797|gb|EEJ54943.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269934215|gb|EEZ90782.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
 gi|304649351|gb|EFM46637.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
           35239]
 gi|307613545|gb|EFN92793.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
           FB024-16]
          Length = 234

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 1/158 (0%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP    +SA++P+L   Q ++G+VS   IE+ A +L +    V  +ATFYTQ++ 
Sbjct: 18  EIINRYPEGHARSALLPMLHLVQSEDGYVSPNGIELCAELLGLNPAEVSAVATFYTQYKR 77

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  + C + G +++ +     +        +DG ++ E +EC  AC  A
Sbjct: 78  RPNGEYT-VGVCVNSLCAVMGGDEIWDTVCEHLGVGHEETTADGKITLEALECNAACDYA 136

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           P++M+  + +++ TPE   +++D    G       GP+
Sbjct: 137 PVIMVNWEFFDNQTPESAVKLVDDLRAGNPVGTTRGPK 174


>gi|297563971|ref|YP_003682944.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848420|gb|ADH70438.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 248

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I RYP  R +SA++PLL   Q +EG VS+A +   A+ L +    V  +ATFYT ++ 
Sbjct: 33  EIIGRYP--RPRSALLPLLHLVQAEEGHVSKAGMRFCADQLGITLAEVNAVATFYTMYRR 90

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G +++ +  ++ +         DG ++ E VEC  AC  A
Sbjct: 91  RP-GGDYQVGVCTNTLCAVMGGDEIFQTLKDHLGVGNNETTEDGKVTLEHVECNAACDFA 149

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           P+VM+  + +++ TP+  + ++D    G+      GP
Sbjct: 150 PVVMVNWEFFDNQTPDTAKRLVDDLRLGRDVAPTRGP 186


>gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243]
 gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344]
 gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b]
 gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1]
 gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229]
 gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668]
 gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247]
 gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a]
 gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH]
 gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4]
 gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98]
 gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14]
 gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91]
 gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9]
 gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210]
 gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894]
 gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177]
 gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112]
 gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215]
 gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811586|ref|YP_002896037.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
 gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei
           K96243]
 gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344]
 gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia
           pseudomallei 1710b]
 gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264]
 gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1]
 gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229]
 gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           668]
 gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a]
 gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247]
 gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
          Length = 161

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160


>gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu]
          Length = 161

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  +
Sbjct: 62  VATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 121 LKEGECMGACGDAPVLLVNNHKMCSFMSREKIDQLLEELS 160


>gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16]
 gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16]
          Length = 167

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 4/155 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGKDTY--EDLTPERLEEIID 170
            EC GAC +AP VMI  +T     ++ ++L+ ++D
Sbjct: 123 GECMGACGDAP-VMIVNNTRMCSFMSDDKLDALVD 156


>gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 164

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           ++ FS+ES      +I ++P  R  S ++P L   Q  +G+V    ++ +A+ +   ++ 
Sbjct: 4   AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT +   PVG + H+Q+C    C L G + + E   +K+  K      D  
Sbjct: 62  AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            + +EV+C GAC   P+  I    YE+LTPE +E+I+
Sbjct: 121 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKIL 157


>gi|159899602|ref|YP_001545849.1| NADH-quinone oxidoreductase subunit E [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892641|gb|ABX05721.1| NADH-quinone oxidoreductase, E subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 174

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+    ++E+++RYP  R +SA++PLL  AQ+  G + R +I  VA ILD+ Y  V E+ 
Sbjct: 4   EQHKAEIDEILARYPVDRKRSALLPLLYLAQDVYGRLDRDSIREVAEILDLPYTDVFEVV 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FYT F    VG +  + VC   PC   G E+L+    N++  K      D   +   V+
Sbjct: 64  GFYTLFYNEEVG-KVVLDVCDDVPCCFCGAEELVADLENRLGIKAGETTKDKVFTLRRVK 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C  AC  AP++    + +  + P+++E ++
Sbjct: 123 CIAACDQAPVLQANLEFHNRVLPDKVEAML 152


>gi|121534129|ref|ZP_01665954.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
           Nor1]
 gi|121307232|gb|EAX48149.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
           Nor1]
          Length = 166

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E++++Y   +   A+IP+L  AQ   G++S+  IE +A  LD+   ++  + TFY QF
Sbjct: 22  LDEILAKYQGVK--GALIPVLQEAQNAYGYLSKEVIEYIAEKLDIPVSQIYGVVTFYAQF 79

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G R  ++VC  T C +RG + +++   + +        +D   + E V C GAC 
Sbjct: 80  HLNPRG-RNIIRVCQGTACHVRGAKAILKALEDNLKITAGGTTADLKFTLETVACIGACG 138

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++MI  DT+  LTPE +  I+  +
Sbjct: 139 LAPVMMINDDTHGRLTPEVIPSILAKY 165


>gi|222053574|ref|YP_002535936.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
 gi|221562863|gb|ACM18835.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
          Length = 168

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N+VI ++        ++P+L   QE+ G+V +  I++VA  L++   ++  + TFY QF 
Sbjct: 20  NQVIDKF--LTLPGNLMPVLQGIQEEYGYVPKPTIDLVAERLNVYPSQIYGVLTFYAQFH 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G +  ++VC  T C ++G E++++   +K+H        D   ++E+V C GAC  
Sbjct: 78  LKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETTPDLRFTFEKVACLGACGM 136

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DT+  +T +++EEII  +S
Sbjct: 137 APLAMVNDDTFGKMTVQKVEEIIADYS 163


>gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
 gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
          Length = 293

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++PLL   Q +EG V+R  +   A++L++    V  +ATFYT ++ 
Sbjct: 36  EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAEVTAVATFYTMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + +    +  +         DG ++ E +EC  AC  A
Sbjct: 94  KPSGDY-QVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTLEHIECNAACDFA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP   + ++D    G+
Sbjct: 153 PVVMVNWEFFDNQTPATAKRLVDDLRAGR 181


>gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
           40736]
 gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
           40736]
          Length = 303

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFYT ++ 
Sbjct: 36  EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAEVTAVATFYTMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 94  RPSGDY-QVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACDFA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TP     ++D    G+
Sbjct: 153 PVVMVNWEFFDNQTPSSARRLVDDLRAGR 181


>gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a]
 gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Frankia alni ACN14a]
          Length = 257

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 5/169 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FS E+     E+I+RYP  R +SA++PLL   Q ++G V+   +   A+ L +    V
Sbjct: 2   MAFSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEV 61

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C L G +++      ++         DG+++ 
Sbjct: 62  GAVATFYTMYKRRPVGDYL-VSVCTNLSCALLGGDEVFARVAERLGVGHDETTPDGSITL 120

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           E  EC  AC  AP++ +  + Y+ + P+    I++    G+    RP P
Sbjct: 121 EHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGE----RPAP 165


>gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197124713|ref|YP_002136664.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
 gi|220919434|ref|YP_002494738.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|85777127|gb|ABC83964.1| NADH dehydrogenase subunit E [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196174562|gb|ACG75535.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
 gi|219957288|gb|ACL67672.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 171

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++RYPP R  +A+IP L   QE  G++S A   + A  L  +  R  E+ATFY  F   
Sbjct: 28  ILNRYPPDRKAAAMIPALRLGQEIFGYLSPAVQRLAAERLGTSPARAEEVATFYVMFHTE 87

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   R  V+VC    C L G E++ E  + K+         DG ++  EVEC G+C  AP
Sbjct: 88  PPA-RHVVEVCTNVSCCLTGGERIFEHLKKKLELANGQSTRDGRITLREVECLGSCGTAP 146

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
            +++ ++ +E LT +++++I+   
Sbjct: 147 AMLVDEEMHERLTIQKVDQIVGGL 170


>gi|160900608|ref|YP_001566190.1| NADH-quinone oxidoreductase subunit E [Delftia acidovorans SPH-1]
 gi|160366192|gb|ABX37805.1| NADH-quinone oxidoreductase, E subunit [Delftia acidovorans SPH-1]
          Length = 163

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + QSAV+  L   Q+++GWVS  +  V+A  L MA I V E+ TFY  +   P
Sbjct: 14  VAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEVTTFYNMYNQRP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            GT   + VC   PC LR   K +    +++  K      DG  + ++ EC GAC ++P+
Sbjct: 74  TGTY-KLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQSECLGACADSPV 132

Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
           +++        ++ E+L+E+ID     +G
Sbjct: 133 MLVNDRCMCSFMSNEKLDELIDGLRAAEG 161


>gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
 gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
          Length = 161

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E
Sbjct: 2   ISAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  +
Sbjct: 62  VATFYTMYETSPVG-KHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 121 LKEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160


>gi|239980148|ref|ZP_04702672.1| NADH dehydrogenase subunit E [Streptomyces albus J1074]
 gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074]
 gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074]
          Length = 291

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 5/154 (3%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I+RYP SR  SA++P+L   Q +EG+V+R  +   A +L +    V  +ATFYT ++  
Sbjct: 37  IIARYPDSR--SALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFYTMYRRK 94

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + + +  +  +         DG ++ E +EC  AC  AP
Sbjct: 95  PSGDY-QVGVCTNTLCAVMGGDAIFDELKEHLGVGNDETTEDGKITLEHIECNAACDYAP 153

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +VM+  + +++ TP+  + ++D     +G T+ P
Sbjct: 154 VVMVNWEFFDNQTPDSAKRLVDDLR--EGRTVEP 185


>gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001]
 gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001]
          Length = 161

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160


>gi|121604334|ref|YP_981663.1| NADH-quinone oxidoreductase subunit E [Polaromonas
           naphthalenivorans CJ2]
 gi|120593303|gb|ABM36742.1| NADH dehydrogenase subunit E [Polaromonas naphthalenivorans CJ2]
          Length = 165

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S   SE++    +  +++YP S+ QSAV+  L   Q++ G+VS  + ++VA  L MA I
Sbjct: 2   TSSMISEQTKALFDREVAKYPTSQKQSAVMACLQIVQQERGFVSAESEKLVAEYLGMAPI 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ TFY  +   PVG +  + VC   PC LR   K ++   +K+         DG  
Sbjct: 62  AVHEVTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGAKALQHLEHKLGVAMGETTKDGMF 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTY--EDLTPERLEEIIDAFSTGQG 177
           + ++ EC GAC ++P VM+  D +    ++ E+L+++ID   + + 
Sbjct: 121 TLQQSECLGACADSP-VMLVNDIHMCSFMSNEKLDQLIDGLKSAEA 165


>gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
 gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
          Length = 158

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  I++YP  R QSAV+  L  AQE++GW++   +  VA  L M  I V E
Sbjct: 2   LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L P G +  + +C   PC L G     +  + K+  +      DG  + +E
Sbjct: 62  VATFYNMYNLEPTG-KYKITICTNLPCALSGSNDSAKYIKQKLGIEFNQTTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECFGACGDAPVLLV 135


>gi|311104662|ref|YP_003977515.1| NADH-quinone oxidoreductase subunit E [Achromobacter xylosoxidans
           A8]
 gi|310759351|gb|ADP14800.1| NADH-quinone oxidoreductase, E subunit [Achromobacter xylosoxidans
           A8]
          Length = 164

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V E
Sbjct: 3   LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATEIIEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVG +  + VC   PC LR  E+  +  + K+         DG  +  E
Sbjct: 63  VATFYNMFDVKPVG-KNKIAVCTNLPCALRDGERAGDYLKRKLGVDYRGTTPDGQFTLVE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC ++P++++  K     +T E+L+ ++ A    QG++
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALKV-QGES 163


>gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
 gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
          Length = 161

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++ VI++YP  + QSAV+  L  AQ++ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  S 
Sbjct: 63  ATFYTMYELKPVG-KHKLTLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGRFSL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELS 160


>gi|325921407|ref|ZP_08183264.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
 gi|325548165|gb|EGD19162.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
          Length = 175

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            SE++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSEKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|220929649|ref|YP_002506558.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
           H10]
 gi|219999977|gb|ACL76578.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
           H10]
          Length = 163

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 87/154 (56%), Gaps = 3/154 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           ++E+++ + ++I +Y  +R   A+IP+L   QE  G++S   ++ ++  L+++   +  +
Sbjct: 11  TDENSLKLGKIIDKYKGTR--GALIPVLHEVQEVYGYLSEDVLKEISEKLNVSLAEIYGV 68

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFYTQF L+P G R  + +C  T C ++G  +++E  + K+         DG  S +  
Sbjct: 69  VTFYTQFSLNPKG-RFKINICMGTACYVKGSGEILEKFKEKLGIDVGQCTEDGKFSLDAC 127

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            C GAC  AP++MI  D +  L P+ +E I++ +
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLLPDDVEAILEKY 161


>gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
          Length = 161

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E      + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATAAYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFS 173
           +E EC GAC +AP++++       L + E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSLMSREKIDQLLEELS 160


>gi|134299711|ref|YP_001113207.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052411|gb|ABO50382.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
          Length = 160

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S  SF +     + E  +RY  +    ++IP+L  AQE  G++S   ++ +A  L++ Y 
Sbjct: 4   SCCSFKDPKQKALKETFARYQGT--SGSLIPILQEAQEIYGYLSGEVMQQIARELNIPYS 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V  + TFY QF L P G R  +++C  T C ++G ++L+E  R     +      D   
Sbjct: 62  KVYGVVTFYAQFHLRPRG-RNIIRICTGTACHVKGADRLLETVREATGLEGEGTTEDLRY 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + E V C GAC  AP +MI +DTY  LTP +   I+  +
Sbjct: 121 TLETVACLGACGLAPAMMINEDTYGRLTPVKALNILKQY 159


>gi|150026259|ref|YP_001297085.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772800|emb|CAL44284.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 176

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYI 73
           + + +E     + E+ S YP  + +SA++P+L   Q+  E W+S    + VA IL +  +
Sbjct: 9   TINITEALMTRIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPV 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ +FYT +   P+G +   + C T+PC L G E L++   +K+  K     +DG  
Sbjct: 69  EVYEVVSFYTMYNRRPIG-KYMFEFCQTSPCCLNGTENLMDYTCDKLGVKVGEPTADGLF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
               VEC GAC  APM+ +G    E LT  +++++I
Sbjct: 128 EVRGVECLGACDYAPMMQLGDFYQEHLTEAKIDQLI 163


>gi|307328625|ref|ZP_07607798.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885737|gb|EFN16750.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 276

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFYT ++ 
Sbjct: 30  EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEVTAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  ++ +         DG ++ E +EC  AC  A
Sbjct: 88  KPSGDY-QVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLEHIECNAACDYA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           P+VM+  + +++ T E  + ++D    G+  T+ P
Sbjct: 147 PVVMVNWEFFDNQTIESAKGLVDDLRAGR--TVEP 179


>gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens
           T118]
 gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens
           T118]
          Length = 162

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SEES +   + +++YP  + QSAV+  L   Q++ G+VS  +  +VA  L MA + V E
Sbjct: 2   ISEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  +   PVG +  + VC   PC LR   K ++   +K+  K      DG  + ++
Sbjct: 62  VTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGGKALKHLEHKLDIKMGETTPDGMFTLQQ 120

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
            EC GAC ++P++++   T    ++ ++L++++D  
Sbjct: 121 CECLGACADSPVLLVNDQTMCSFMSDDKLDQLVDGL 156


>gi|226227064|ref|YP_002761170.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
 gi|226090255|dbj|BAH38700.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
          Length = 155

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 4/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++++RYP    Q+A++P L   Q+  GWVS A +E VA  L++    V  + TFYT +
Sbjct: 10  LDKILARYPHK--QAALLPALWMLQDARGWVSEAGMEEVAAALEITPAYVKGVVTFYTMY 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144
              PVGT   +QVC TTPC + G E +++        + L   S DG  +  EVEC GAC
Sbjct: 68  HQHPVGTY-FIQVCTTTPCNVCGAEDVVKAFLEHTGCEDLGLTSPDGKYTVIEVECLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             A  V I  D  E +TPE +  I+
Sbjct: 127 GFATPVQINNDYVESVTPESVPRIL 151


>gi|256371184|ref|YP_003109008.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007768|gb|ACU53335.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 208

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F  E A    E++  YP  R  SAV+PL   AQEQ+GW++  AI  +A ++      V  
Sbjct: 4   FEGEFAARAEELVGLYPERR--SAVLPLCHLAQEQDGWLTPEAIRHIAELVGQTPAEVQG 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            A+FY    L PVG R  V +C    C+LR  ++L+E     +         DG ++ EE
Sbjct: 62  AASFYDMLHLEPVG-RYVVGICTNIACLLRDGDRLLEAAEELLGVGVGGTTPDGLITLEE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           VEC   C  AP V +    +  +TP   EE++     G+ D
Sbjct: 121 VECVAHCDKAPAVQVNYRYFGPVTPTSFEELVGQLRRGELD 161


>gi|327191025|gb|EGE58079.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           CNPAF512]
          Length = 169

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            AP++ +G D +  L   R++ ++D   T  G
Sbjct: 124 MAPVMQVGDDYHGGLDIARIDALLDRLRTEAG 155


>gi|302543440|ref|ZP_07295782.1| NADH dehydrogenase I, E subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461058|gb|EFL24151.1| NADH dehydrogenase I, E subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 276

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 5/155 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI+RYP SR  SA++PLL   Q +EG V+R  I   A +LD+    V  +ATFYT ++ 
Sbjct: 30  EVIARYPDSR--SALLPLLHLVQSEEGHVTRTGIRFCAEVLDLTTAEVTAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G    V VC  T C + G + + E  ++ +         DG ++ E +EC  AC  A
Sbjct: 88  KASGDY-QVGVCTNTLCAVMGGDAIFEELQSHLELGNGETTEDGKVTLEHIECNAACDFA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           P+VM+  + +++ T    ++++D    G+  T+ P
Sbjct: 147 PVVMVNWEFFDNQTVGSAKQLVDDLRAGR--TVTP 179


>gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
 gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
          Length = 224

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++++RYP    +SA++P+L   Q ++G+VS   I + A++L +    V  +ATFY+Q++ 
Sbjct: 16  QIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAVATFYSQYKR 75

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G   +V VC  + C + G +++ E     +        +DG ++ E +EC  AC  A
Sbjct: 76  HPNGDY-NVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADGKITLERLECNAACDYA 134

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ----IDRISSAPAGGLTSLLD 202
           P+VM+  + +++ TPE    ++D    G+      GP        IS   AG    L+D
Sbjct: 135 PVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPNQIRTFKEISHLLAGFEDGLVD 193


>gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4]
 gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4]
          Length = 307

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           VR  A EE  P+  +  +  A   + V++RYP SR  SA++PLL   Q ++G ++ A +E
Sbjct: 27  VRPGAREEHPPAVRARLDADA---DVVVARYPNSR--SALLPLLHLVQAEDGCITPAGVE 81

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A  L +    V  +ATFY+ ++  P G   +V VC  T C + G + ++      +  
Sbjct: 82  FCAGRLGLTGAEVAAVATFYSMYRRDPTGDY-YVGVCTNTLCAVMGGDAILAALEAHLDL 140

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                 +DG ++ E +EC  AC  AP+VM+  + +++  PE    ++DA  +G 
Sbjct: 141 PHGGTTADGKVTLEHIECNAACDYAPVVMVNWEFFDNQNPESARSLVDALRSGD 194


>gi|226355363|ref|YP_002785103.1| NADH dehydrogenase (quinone) subunit E [Deinococcus deserti VCD115]
 gi|226317353|gb|ACO45349.1| putative NADH dehydrogenase (quinone), subunit E (NADH-quinone
           oxidoreductase, subunit E) [Deinococcus deserti VCD115]
          Length = 209

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 4/167 (2%)

Query: 16  FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            S+  +    V ++I RYP  P   +SA++PLL   Q  EG++S A +  +  +      
Sbjct: 1   MSYFADKQGLVADIIRRYPDSPQGRRSALMPLLREVQNAEGFISEARMAEIGALCGTTAT 60

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY+ +   P G R H+QVC T  C L G ++L +   +++  +P     DG  
Sbjct: 61  EVRSVLSFYSTYHTVPTG-RHHLQVCSTLMCALAGSDELWDYLVSELDVQPGEVTPDGAF 119

Query: 134 SWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
           S ++VEC G+C  APM+ +     YE++T  + + ++ A   GQ  T
Sbjct: 120 SVQKVECLGSCGTAPMMQVNDLGYYENVTRTKCDRLLSAMRAGQTPT 166


>gi|332669453|ref|YP_004452461.1| NADH-quinone oxidoreductase subunit E [Cellulomonas fimi ATCC 484]
 gi|332338491|gb|AEE45074.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas fimi ATCC 484]
          Length = 308

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++ +RYP  R  SA++PLL   Q ++G+VS   I   A  L +    V  +ATFYTQ++ 
Sbjct: 34  QIKARYPQER--SALLPLLHLVQSEDGYVSPRGIAFCAAELGLTTAEVSAVATFYTQYKR 91

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E   + +        +DG+++ E VEC  AC  A
Sbjct: 92  HPNGDYT-VGVCTNTLCAVMGGDAIWEELSDHLGVGHDETTADGSITLERVECNAACDYA 150

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + +++ TP+   E++DA   G
Sbjct: 151 PVVMVNWEFFDNQTPDSAREVVDALRQG 178


>gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
 gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
          Length = 157

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  R +SA++  L  AQ ++GW+S   IE VA+ + +  ++  E
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        SDG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTSDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|190893217|ref|YP_001979759.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
 gi|190698496|gb|ACE92581.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           CIAT 652]
          Length = 167

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 5   IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 63  HTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            AP++ +G D + DL   R++ ++    T  G
Sbjct: 122 MAPVMQVGDDYHGDLDIARIDALLARLRTEAG 153


>gi|71275686|ref|ZP_00651971.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71897858|ref|ZP_00680084.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|170729493|ref|YP_001774926.1| NADH dehydrogenase subunit E [Xylella fastidiosa M12]
 gi|71163577|gb|EAO13294.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Dixon]
 gi|71732413|gb|EAO34467.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Ann-1]
 gi|167964286|gb|ACA11296.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
           M12]
          Length = 175

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++  ++++P  + +SA++  L  AQEQ +GW++   I  VA  LD+  +   E+ATFY+ 
Sbjct: 27  IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGA 143
           F+   VG R +V  C    C L G E L+     K+  K     +DG +  + E EC  A
Sbjct: 87  FETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEECLAA 145

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  APM++I    +E LT E++++++D  
Sbjct: 146 CAGAPMMVINGHYHERLTKEKVDQLLDGL 174


>gi|15836912|ref|NP_297600.1| NADH dehydrogenase subunit E [Xylella fastidiosa 9a5c]
 gi|28198175|ref|NP_778489.1| NADH dehydrogenase subunit E [Xylella fastidiosa Temecula1]
 gi|71897770|ref|ZP_00679996.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|182680809|ref|YP_001828969.1| NADH dehydrogenase subunit E [Xylella fastidiosa M23]
 gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase, NQO2 subunit [Xylella fastidiosa
           9a5c]
 gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
           Temecula1]
 gi|71732325|gb|EAO34379.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Ann-1]
 gi|182630919|gb|ACB91695.1| NADH-quinone oxidoreductase, E subunit [Xylella fastidiosa M23]
 gi|307579277|gb|ADN63246.1| NADH dehydrogenase subunit E [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 175

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++  ++++P  + +SA++  L  AQEQ +GW++   I  VA  LD+  +   E+ATFY+ 
Sbjct: 27  IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE-EVECQGA 143
           F+   VG R +V  C    C L G E L+     K+  K     +DG +  + E EC  A
Sbjct: 87  FETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLKCEEECLAA 145

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  APM++I    +E LT E++++++D  
Sbjct: 146 CAGAPMMVINGHYHERLTKEKVDQLLDGL 174


>gi|309389877|gb|ADO77757.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 160

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 84/147 (57%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E+++RY   + +  +IP+L  AQE+ G++    ++ +A  L+++  +V  + TFY+QF
Sbjct: 16  VAEILARY--GKKERYLIPVLQEAQEEYGYLPEEVLKEIAIGLNLSLSQVYGVVTFYSQF 73

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    ++VC  T C +RG E+++   ++++  +      D   + E V C GAC 
Sbjct: 74  HQEPRGNNI-IRVCMGTACHVRGGEEILNAIKDELKIEAGQTTEDLEFTLESVACIGACG 132

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++MI  DT+  LTPE + EII  +
Sbjct: 133 LAPVIMINDDTHGRLTPESIPEIISKY 159


>gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
 gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
          Length = 286

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +    V  +ATFYT ++ 
Sbjct: 30  EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 88  KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLEHIECNAACDFA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE    ++D    G+
Sbjct: 147 PVVMVNWEFFDNQTPESAVRLVDELRAGR 175


>gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
 gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616]
 gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
          Length = 161

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC GAC +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECFGACGDAPVLLVNNHKMCSFMSREKIDQLLEELS 160


>gi|218510339|ref|ZP_03508217.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           Brasil 5]
          Length = 172

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 10  IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG   H+Q+C    CML   E L+      +  K      D   +   VEC GAC 
Sbjct: 68  HSEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLGACE 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
            AP++ +G D +  L   R++ ++    T  G     G   D  S+AP 
Sbjct: 127 MAPVMQVGDDYHGGLDIARIDALLAKLRTEAGQ----GAGADLASAAPG 171


>gi|94309876|ref|YP_583086.1| NADH dehydrogenase subunit E [Cupriavidus metallidurans CH34]
 gi|93353728|gb|ABF07817.1| NADH dehydrogenase chain E [Cupriavidus metallidurans CH34]
          Length = 168

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KHKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 123 GECMGACGDAPVMIV 137


>gi|189218229|ref|YP_001938871.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
           infernorum V4]
 gi|189185087|gb|ACD82272.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
           infernorum V4]
          Length = 171

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 7/147 (4%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++IS+YP S+ +SA +PLL   Q+  G+VSR  +E +A  L++  I V EIATFY   + 
Sbjct: 21  KIISQYPVSK-RSASLPLLHLWQKHFGYVSREGVEWIAQKLELEPIAVEEIATFYPMIRH 79

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLH--RNSDGTLSWEEVECQG 142
            P+G +   +VC T  C L G  +L +  +   N + +   H   + DG  S E VEC  
Sbjct: 80  RPLG-KYQFKVCRTLSCALAGSYQLFDYIKQNCNALQEVGHHVYLSEDGQFSVEFVECLA 138

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
           AC NAP++MI ++ + D+T E+++ I+
Sbjct: 139 ACGNAPVMMINEEEWMDVTKEKIQGIL 165


>gi|302521198|ref|ZP_07273540.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
 gi|318057839|ref|ZP_07976562.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actG]
 gi|318078937|ref|ZP_07986269.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actF]
 gi|302430093|gb|EFL01909.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
          Length = 286

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +    V  +ATFYT ++ 
Sbjct: 30  EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 87

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 88  KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNAACDFA 146

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE    ++D    G+
Sbjct: 147 PVVMVNWEFFDNQTPESAVRLVDDLRAGR 175


>gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN]
 gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans
           PsJN]
          Length = 161

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW++   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMI 152
           +E EC G+C +AP++++
Sbjct: 122 KEGECMGSCGDAPVMLV 138


>gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|296160633|ref|ZP_06843448.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
 gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|295889159|gb|EFG68962.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
          Length = 161

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI 152
           +E EC G+C +AP++++
Sbjct: 122 KEGECMGSCGDAPVMLV 138


>gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22]
 gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 287

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EV++RYP SR  SA++PLL   Q +EG V+R  +   A++L +    V  +ATFY+ ++ 
Sbjct: 34  EVVARYPDSR--SALLPLLHLMQAEEGHVTRTGVRFCADVLGLTTAEVTAVATFYSMYRR 91

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  ++ +         DG ++ E +EC  AC  A
Sbjct: 92  RPSGDY-QVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGKVTLEHIECNAACDFA 150

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + +++ T +  + ++D    G
Sbjct: 151 PVVMVNWEFFDNQTVDSAKRLVDDLRDG 178


>gi|21231956|ref|NP_637873.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767917|ref|YP_242679.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991033|ref|YP_001903043.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573249|gb|AAY48659.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732793|emb|CAP50987.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 175

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|163855991|ref|YP_001630289.1| NADH dehydrogenase subunit E [Bordetella petrii DSM 12804]
 gi|163259719|emb|CAP42020.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           petrii]
          Length = 167

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQ+++GW+S   +E VAN + +  I V E
Sbjct: 3   LSEQAYQKIDRELAKFPADQRQSAIMASLAIAQDEKGWLSPEVLEDVANYIGVPPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F + PVG +  + VC   PC LR  EK  +  + K+         DG  +  E
Sbjct: 63  VATFYNMFDVKPVG-KHKIAVCTNLPCALRDGEKAGDYLKRKLGIDYRETTPDGLFTLVE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC ++P++++  K     +T E+L+ ++   
Sbjct: 122 GECMGACGDSPVLIVNNKHMCVRMTEEKLDALVQGL 157


>gi|195400739|ref|XP_002058973.1| GJ15322 [Drosophila virilis]
 gi|194141625|gb|EDW58042.1| GJ15322 [Drosophila virilis]
          Length = 129

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P G + H+QVC TTPC LRG +++++ C+ ++         D   +  EVEC GAC
Sbjct: 2   FMRKPTG-KYHIQVCTTTPCWLRGSDEILDTCKKQLGIGVGETTKDNKFTISEVECLGAC 60

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQIDRISSAPAGGLTSL 200
           VNAPMV I  D YEDLT   ++ I+      + D I  PGP+  R +S P G  TSL
Sbjct: 61  VNAPMVSINDDYYEDLTSADMQSILGDL---KADKISPPGPRNGRFASEPKGNPTSL 114


>gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478]
          Length = 248

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I RYP  R  SA++PLL   Q ++ +++ A +E  A  L +    V  +A+FYT ++ 
Sbjct: 38  EIIGRYPDKR--SALLPLLHLVQGEDSYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRR 95

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +        +DGT++ + +EC  AC  A
Sbjct: 96  GPTGDYL-VGVCTNTLCAIMGGDAIFEELKEHLGIGNDETTADGTVTLQHIECNAACDYA 154

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE   E++D+  TG 
Sbjct: 155 PVVMVNWEFFDNQTPESACELVDSLRTGN 183


>gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680]
 gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 287

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++PLL   Q +EG V+R  ++  A+IL +    V  +ATFYT ++ 
Sbjct: 36  EIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMQFCADILGLTTAEVTAVATFYTMYRR 93

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + +    ++ +         DG ++ E +EC  AC  A
Sbjct: 94  RPSGDY-QVGVCTNTLCAVMGGDAIFSALQDHLGVGNGETTDDGKVTLEHIECNAACDFA 152

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + +++ T    + ++D    G
Sbjct: 153 PVVMVNWEFFDNQTVASAKRLVDDLRAG 180


>gi|333025115|ref|ZP_08453179.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
 gi|332744967|gb|EGJ75408.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
          Length = 279

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +    V  +ATFYT ++ 
Sbjct: 23  EIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFYTMYRR 80

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  A
Sbjct: 81  KPSGDY-QVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGKVTLEHIECNAACDFA 139

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+VM+  + +++ TPE    ++D    G+
Sbjct: 140 PVVMVNWEFFDNQTPESAVRLVDDLRAGR 168


>gi|296140855|ref|YP_003648098.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
           DSM 20162]
 gi|296028989|gb|ADG79759.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 237

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP  R  SA++PLL   Q Q+G+++ A IE  A  L++    V+ +ATFY+ ++  P G
Sbjct: 46  RYPEPR--SALLPLLHLVQSQDGYITPAGIEFCARTLELTAADVISVATFYSMYRRGPTG 103

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               V VC TT C + G + ++      +  +P     DG ++ E +EC  AC  AP+VM
Sbjct: 104 -EYLVGVCTTTLCAVLGGDAILSALCEHLGIEPGGTTDDGRVTVERIECNAACDYAPVVM 162

Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175
           +  + ++D T      ++D   TG
Sbjct: 163 VNWEFFDDQTVASARALVDGLRTG 186


>gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
 gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 161

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E
Sbjct: 2   ISAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  +
Sbjct: 62  VATFYTMYELNPVG-KHKITLCTNLPCQLGPDGGAEATADYLKQKLGIGFGETTPDGKFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 121 LKEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160


>gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 219

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I RYP +R  SA++PLL   Q ++G+VS    E  A +L ++   V+ ++TFYT +
Sbjct: 15  AKEIIGRYPKTR--SALLPLLHLVQSEDGYVSDDGQEFCAEMLGLSKAEVVGVSTFYTMY 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P+G   HV VC  T C + G +++ +               DG +S E +EC  AC 
Sbjct: 73  KRKPMGDY-HVGVCINTLCAVMGGDQIWDELSEHAGVGHDETTPDGKVSLERLECNAACD 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP++M+  + +++ TP   ++++D    G+  +   GP+
Sbjct: 132 FAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGPK 171


>gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6]
 gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MC40-6]
          Length = 161

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELNPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160


>gi|91789112|ref|YP_550064.1| NADH-quinone oxidoreductase subunit E [Polaromonas sp. JS666]
 gi|91698337|gb|ABE45166.1| NADH dehydrogenase subunit E [Polaromonas sp. JS666]
          Length = 166

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S   SE++    +  +++YP  + QSAV+  L   QE++G+VS  + ++VA  L M  I 
Sbjct: 3   STMISEQTKARFDREVAKYPADQKQSAVMACLTIVQEEQGFVSAESEKLVAEYLGMTPIA 62

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+ TFY  +   PVG +  + VC   PC LR   + ++   +K+        +DG  +
Sbjct: 63  VHEVTTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGARALKHLEHKLGISMGQTTADGLFT 121

Query: 135 WEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
            ++ EC GAC ++P++++   T    ++ E+L+++ID   + + 
Sbjct: 122 LQQSECLGACADSPVMLVNDLTMCSFMSDEKLDQLIDGLKSAEA 165


>gi|302340165|ref|YP_003805371.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
           11293]
 gi|301637350|gb|ADK82777.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 161

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 14/172 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSV+   E +F  S  +F EE   W N+      P      +I +L + QE+ G++ R A
Sbjct: 1   MSVQSEVEMKFSDSLVAFIEE---WKNK------PGN----LIMILHKVQEEFGYIPREA 47

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + VA++LD+   ++  + TFY  F+L+  G + ++QVC  T C L+G E +I+   N +
Sbjct: 48  AKRVASMLDVPLAKIYGVVTFYHFFKLTKPG-KHNIQVCMGTACYLKGGEDIIQELENIL 106

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                    DG  S E V C G C  AP+++IG + +  LT E+L EI+  F
Sbjct: 107 GIGVNQVTPDGQFSLEAVRCVGCCGLAPVMVIGDEVFGKLTKEQLPEILAKF 158


>gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49]
          Length = 161

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160


>gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
 gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
          Length = 158

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SEES   + + ++++P ++ +SA I  L  AQ+++GW+S   +  +A+ L +  + + E
Sbjct: 3   LSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAIEE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY+ F   PVG +  + VC   PC + G +   +  + K+H        DG  +  E
Sbjct: 63  VASFYSMFNTRPVG-KYKIAVCCNLPCEMTGSDVTAQYLKEKLHIGFGETTPDGLFTLVE 121

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIID 170
            EC GAC + P++++  K  Y  +T +R++ +++
Sbjct: 122 SECMGACGDGPVILVNNKKMYMRMTKDRIDRLLE 155


>gi|294624674|ref|ZP_06703344.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666773|ref|ZP_06732007.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601030|gb|EFF45097.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603434|gb|EFF46851.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 175

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            SE++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSEKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus
           denitrificans BC]
 gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans
           K601]
 gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans BC]
 gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YPP + QSAV+  L   Q+++GW+S+ +   +A  L M  I V E+ TFY  +   P
Sbjct: 14  VAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHEVTTFYNMYNQQP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LRG  + +     K+         DG  + ++ EC GAC +AP 
Sbjct: 74  VG-KYKLAVCTNLPCQLRGGNQALHHLEAKLGITMGETTQDGLFTLQQCECLGACADAPT 132

Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177
           +++  +     +  ++L++++D     +G
Sbjct: 133 MLVNDRHMCSFMENDKLDQLVDGLRAAEG 161


>gi|224456276|ref|ZP_03664749.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 131

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
           G+++      +A  L ++ + V E+ATFY  + L PVG R  + VC    CML G  +++
Sbjct: 13  GYLTDDLQTALAEYLQVSKVDVYEVATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEIL 71

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                K+  KP     DG ++ +EVECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 72  AHIEKKLAIKPGETTKDGRITLKEVECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 130


>gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3]
 gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315]
 gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia
           MC0-3]
 gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia
           J2315]
          Length = 161

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELS 160


>gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
 gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
          Length = 161

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQ + GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KFKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVMLVNNQRMCSFMSREKIDQLLEELS 160


>gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans]
 gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans]
          Length = 159

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  I+++P  + QSAV+  L  AQ++ GW+    ++ VA+ L M  I V E
Sbjct: 3   LSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC+L G E+     ++K+        +DG  +  E
Sbjct: 63  VATFYNMYDTKPVG-KHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTLIE 121

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 122 GECMGACGDAPVMIV 136


>gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera sp. 301]
 gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera sp. 301]
          Length = 157

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 2/141 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + Q+AV+  L   Q + GW+S+ +I  VA  L M  I  +E+A+FY  + LSP
Sbjct: 14  LTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAMEVASFYNMYDLSP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + +C    CMLR  ++++   + K+         DG    +E EC G C  AP+
Sbjct: 74  VG-KYKITICTNISCMLRDSDEIVNHLKTKLGVGFNEVTPDGKFCLKEGECMGCCGGAPL 132

Query: 150 VMIGK-DTYEDLTPERLEEII 169
           + +   D +E LT E+++ II
Sbjct: 133 MHVNNTDMHEFLTVEKVDAII 153


>gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae
           ATCC 10712]
          Length = 246

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ RYP SR  SA++P+L   Q +EG V+R  +   A  L +    V  +ATFY+ ++  
Sbjct: 32  IVDRYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAEVTAVATFYSMYRRK 89

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC  AP
Sbjct: 90  PSGDY-QVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITLEHIECNAACDFAP 148

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +VM+  + +++ TPE  ++++D    G+  T+ P
Sbjct: 149 VVMVNWEFFDNQTPESAKKMVDDLRAGR--TVEP 180


>gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
 gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
          Length = 181

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + QSAV+  L   Q+++GWVS  A   +A  L M  + V E+ TFY  +   P
Sbjct: 25  VAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHEVTTFYNMYNQRP 84

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LR  +K +     K+        +DG  + +E EC GAC +AP+
Sbjct: 85  VG-KFKLNVCTNLPCQLRDGQKALNHLAAKLGISKGETTADGLFTLQESECLGACADAPV 143

Query: 150 VMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPG 183
           +++   T    ++ ++L+++ID      G +   G
Sbjct: 144 MLVNDRTMCSFMSGDKLDQLIDGLKGVAGGSDSKG 178


>gi|219847962|ref|YP_002462395.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aggregans DSM
           9485]
 gi|219542221|gb|ACL23959.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aggregans DSM
           9485]
          Length = 230

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RY   R  SAV+PLL  AQ+  G+++  AI  VA IL++    V E+  FYT F
Sbjct: 11  IESIIARYAGKR--SAVLPLLYLAQDTYGYLTDDAIREVAAILELPPTDVYEVVGFYTLF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVGT   +QVC   PC   G E+LI   +  +         DG  + + V+C  AC 
Sbjct: 69  YDRPVGTWV-LQVCDDVPCCYCGAEELIAALKQTLGINEEETTPDGMFTLQRVKCLAACD 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP++    +   D+TPER++ ++
Sbjct: 128 RAPVLQANLNYVYDVTPERVQTLL 151


>gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 252

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 5/168 (2%)

Query: 10  EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  P ++S    + + V+  E+I RYP  R  SA++PLL   Q ++ +++ A +E   + 
Sbjct: 26  EGAPQTYSPEVRARLEVDAKEIIGRYPDKR--SALLPLLHLVQAEDSYLTPAGLEFCGDQ 83

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L ++   V  +A+FYT ++  P G    V VC  T C + G + + +  +  +       
Sbjct: 84  LGLSGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAVFDALKEHLGIGNDET 142

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
             DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  +G
Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRSG 190


>gi|166712610|ref|ZP_02243817.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|289665177|ref|ZP_06486758.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667376|ref|ZP_06488451.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|325915543|ref|ZP_08177854.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
 gi|325538259|gb|EGD09944.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
          Length = 175

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|285017796|ref|YP_003375507.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e)
           (ndh-1, chain e) (nuo5) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473014|emb|CBA15519.1| probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI
           chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 175

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPERKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLVAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC   C  APM++I    +E LT ++++ ++D  
Sbjct: 138 REEECLAGCAGAPMMVINGHYHEHLTKDKVDALLDGL 174


>gi|226944921|ref|YP_002799994.1| NADH dehydrogenase subunit E [Azotobacter vinelandii DJ]
 gi|226719848|gb|ACO79019.1| NADH-ubiquinone oxidoreductase, chain E [Azotobacter vinelandii DJ]
          Length = 164

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +      Y   R  +A I  L   Q+Q GWV   AI  +  IL +
Sbjct: 5   IQTDRFVLSETERSAIEHETHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEILGI 62

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   R K+   P     D
Sbjct: 63  PASDVEGVATFYSQIFRVPVG-RHVIRVCDSMTCFIGGHETVLAALRQKLGIVPGQTTRD 121

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VMI  DT+ +LTPE +E++++A+
Sbjct: 122 GRFTLLPVCCLGNCDKAPAVMIDDDTFGNLTPEGIEQLLEAY 163


>gi|303239627|ref|ZP_07326152.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
           CD2]
 gi|302592798|gb|EFL62521.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
           CD2]
          Length = 164

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E+IS+Y  +R   A+IP+L  AQE  G++     + ++  L++    V  + TFYTQF
Sbjct: 19  LQEIISKYKDTR--GALIPVLHEAQEVYGYLPIEVQKKISEGLNVPLAEVYGVVTFYTQF 76

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G +  + VC  T C ++G  ++++  + K+  +    + DG  S +   C GAC 
Sbjct: 77  SLNPKG-KYKISVCMGTACYVKGSGQILDKFKEKLGLEVGQCSEDGMFSLDACRCIGACG 135

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+VMI  D Y  L P+ +E II  +
Sbjct: 136 LAPVVMINDDVYGRLVPDDIEGIIKKY 162


>gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 1/160 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + ++ SRYP    +SA+IP+L   Q ++G+V+   I + A  L +    V  +ATFY+QF
Sbjct: 32  IEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTLAEVSAVATFYSQF 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G   HV VC    C + G +++ +             + DG +S E +EC  AC 
Sbjct: 92  RRHPAG-EYHVGVCTNALCAVMGGDEIWQAVAEHTGLGNDETSEDGRISLERIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            AP+VM+  + +++ TP    +++     G+      GP+
Sbjct: 151 YAPVVMVNWEFFDNQTPASAVDMVSRLERGEDVAPTRGPE 190


>gi|123446843|ref|XP_001312168.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
           [Trichomonas vaginalis G3]
 gi|55793665|gb|AAV65813.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Trichomonas
           vaginalis]
 gi|121894006|gb|EAX99238.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
           [Trichomonas vaginalis G3]
          Length = 201

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIR 74
           F FS++S   V+ ++++YP    ++A IPLL   Q E  G+++   ++ ++ I+ +   R
Sbjct: 25  FKFSDQSK--VDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGR 82

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTL 133
           V E A FY+ F+  P      V+VC    C L G + + E  +           S DG  
Sbjct: 83  VHETACFYSMFRFQPPNNHI-VEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDGQF 141

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           + EEVEC GAC NAP++++    Y++LT E  + II+    G+
Sbjct: 142 TLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGK 184


>gi|148266250|ref|YP_001232956.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146399750|gb|ABQ28383.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
          Length = 168

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 85/147 (57%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N++I ++        ++P+L   Q++ G++ R  I++VA  L++   ++  + TFY QF 
Sbjct: 20  NQIIDKF--LTLPGNLMPVLQGIQDEYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G +  ++VC  T C ++G E++++   +K+H      + D   ++E+V C GAC  
Sbjct: 78  LKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETSPDLRFTFEKVACLGACGM 136

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DT+  +T +++E II  +S
Sbjct: 137 APLAMVNDDTFGKMTVQKVEGIIADYS 163


>gi|329914960|ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545010|gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 159

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE +   ++  +S++P  + QSAV+  L  AQ++ GW+S   ++ +A+ L MA I V E
Sbjct: 3   LSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A FY  +  SP G +  + VC   PC L G EK     + K+        +DG  +  E
Sbjct: 63  VAAFYEMYNTSPTG-KFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTLRE 121

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 122 GECMGACGDAPVMLV 136


>gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 252

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 10  EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  P+S+     + + V+  E++ RYP  R  SA++PLL   Q Q+ +++ A +E     
Sbjct: 26  EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +A+FYT ++  P G    V VC  T C + G + + +  +  +       
Sbjct: 84  LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIDNDET 142

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+   G+
Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGE 191


>gi|21243428|ref|NP_643010.1| NADH dehydrogenase subunit E [Xanthomonas axonopodis pv. citri str.
           306]
 gi|78048405|ref|YP_364580.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325924679|ref|ZP_08186117.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
 gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036835|emb|CAJ24528.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325544885|gb|EGD16230.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
          Length = 175

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|229821705|ref|YP_002883231.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
           12333]
 gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
           12333]
          Length = 283

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 3/148 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ RYP  R  SA++PLL   Q ++ +VS A I + A++L +    V  +ATFYTQ++  
Sbjct: 23  ILERYPEQR--SALLPLLHLVQAEDSYVSPAGIALCADLLGLTNAEVSAVATFYTQYKRR 80

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G R  V VC  T C + G +++ +    ++         DG ++ E +EC  AC  AP
Sbjct: 81  PNG-RYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQDGAITLERIECNAACDYAP 139

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           ++M+  + +++ TP    ++++A +  Q
Sbjct: 140 VLMVNWEFFDNQTPTSAVDLVEALAADQ 167


>gi|317057599|ref|YP_004106066.1| NADH-quinone oxidoreductase subunit E [Ruminococcus albus 7]
 gi|315449868|gb|ADU23432.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 7]
          Length = 163

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  + E    + EVI+++        ++P L  AQ   G++     +++A+ L ++   V
Sbjct: 9   FQGTPEQEAQLKEVIAKHHDQ--PGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSEV 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L+P G +  + VC  T C ++G +K++E    K+  K     +DG  S 
Sbjct: 67  FGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFSI 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++++ +D Y  L PE++ +I+D++
Sbjct: 126 DSCRCVGACGLAPVMLVDEDVYGKLKPEQVAKILDSY 162


>gi|108760187|ref|YP_629346.1| NADH dehydrogenase I subunit E [Myxococcus xanthus DK 1622]
 gi|108464067|gb|ABF89252.1| NADH dehydrogenase I, E subunit [Myxococcus xanthus DK 1622]
          Length = 162

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E+IS YPP R  + ++P L   QE +GW+    + +VA  L++   R +E+A+FY  +
Sbjct: 18  IAEIISHYPPDRKSAGMLPALRLLQEIKGWLPPEGLRLVAKHLEVTPERAMEVASFYVMY 77

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L   G    + VC    C L G EK++     K+  K    N   TL   E EC  +C 
Sbjct: 78  HLKKPGKYV-IDVCTNLSCSLWGAEKMLAYLEEKLGLKAGEANEKFTL--RETECLASCG 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP + I +D +E LT  +L+ I+   S
Sbjct: 135 TAPCLQINEDHHESLTQAKLDAILAKLS 162


>gi|297570900|ref|YP_003696674.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931247|gb|ADH92055.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 226

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I+RYP SR  SA++PLL   Q  +G+ S   I +VA+IL +   +V  +ATFY+Q++  
Sbjct: 20  IIARYPQSR--SAIMPLLHLVQSVDGFCSPRGITLVADILGLTRAQVSAVATFYSQYRRH 77

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G   +V VC    C + G + + +     +         DG ++ E++EC   C  AP
Sbjct: 78  PNG-EYNVGVCTNALCAVMGGDLIWDELSEYVGVGHDETTQDGKITLEQLECNAGCDYAP 136

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           +VM+  + +++ TPE  ++I+D    G       GP+
Sbjct: 137 VVMVNWEFFDNQTPETAKKIVDDIRAGHDIHPTRGPE 173


>gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 252

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 10  EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  P+S+     + + V+  E++ RYP  R  SA++PLL   Q Q+ +++ A +E     
Sbjct: 26  EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +A+FYT ++  P G    V VC  T C + G + + +  +  +       
Sbjct: 84  LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIGNDET 142

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+   G+
Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGE 191


>gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
 gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
          Length = 417

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+++YP  R  SA++PLL   Q  +G+V+   I+  A +L+++   V  +ATFYTQ++  
Sbjct: 38  VVAKYPQKR--SALLPLLHLVQSVDGYVTGRGIDFCAEVLELSRAEVSGVATFYTQYKRH 95

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G +++ +     +         DG ++ E +EC  AC  AP
Sbjct: 96  PNGEYT-VGVCTNTLCAIMGGDEIWDSVSEHLGIGHDETTDDGKVTLERIECNAACDYAP 154

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
           +VM   + +++ TPE   +++D    G
Sbjct: 155 VVMANWEFFDNQTPESTNQLVDDLRAG 181


>gi|167629825|ref|YP_001680324.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
           [Heliobacterium modesticaldum Ice1]
 gi|167592565|gb|ABZ84313.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
           [Heliobacterium modesticaldum Ice1]
          Length = 191

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IPLL   QE  G++   A+E +A  L +   +V  +ATFY QF  +P G R  ++V
Sbjct: 58  RGALIPLLQGVQEIYGYLPGPAMERIARTLRLPAAQVYGVATFYAQFHFAPRG-RHVIRV 116

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  ++ E  R ++  +     +D   + E V C GAC  AP++MI  DT+ 
Sbjct: 117 CLGTACHVRGGARIFEALRRQLGVEDGGTTADLRYTLESVACIGACGLAPVIMIDDDTHG 176

Query: 159 DLTPERLEEIIDAF 172
            LTPE L  I+  +
Sbjct: 177 RLTPESLPGILARY 190


>gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis]
 gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis]
          Length = 190

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           +    F F++E+   V  +++ YP +  Q A++PLL  AQ Q GW+  +A+  VA +L +
Sbjct: 39  YDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLPISAVVAVAEVLKI 98

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             ++  E A +YT F + P G    V VC +TPC LRG + L++ C   +  +P   + D
Sbjct: 99  DPMQAYETAKYYTMFHMKPRGMYV-VSVCTSTPCFLRGSDDLLKACSKMLRLEPGETSKD 157

Query: 131 GTLSWEEVECQGAC 144
              S +   C GAC
Sbjct: 158 MQFSLKVDCCLGAC 171


>gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104]
 gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104]
          Length = 252

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 10  EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  P+S+     + + V+  E++ RYP  R  SA++PLL   Q Q+ +++ A +E     
Sbjct: 26  EGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQDSYLTPAGLEFCGEQ 83

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +A+FYT ++  P G    V VC  T C + G + + +  +  +       
Sbjct: 84  LGLTGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAIMGGDAIFDALKEHLGIGNDET 142

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+   G+
Sbjct: 143 TPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLRAGK 191


>gi|326204153|ref|ZP_08194013.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325985664|gb|EGD46500.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 163

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS--RAAIEVVANILDMAYIRVLEIATFYT 83
           V E+++RY  S+    +I +++  Q   G  S     +  VA  LDM   RV  + TFY+
Sbjct: 11  VKEILNRYGNSK--DNLIQVMLELQNISGTNSLPHDWVVFVAEALDMPVSRVYSVITFYS 68

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G +  V+VC + PC + G + ++++   K+  KP     DG  +  +  C GA
Sbjct: 69  MFGNEPRG-KYLVEVCKSGPCHVSGAKTVLQLIEEKLGLKPGETTEDGVFTLIQSSCFGA 127

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C  AP + IG+  Y +LT E+L EI+D++  GQ
Sbjct: 128 CDIAPAIKIGEKVYGNLTAEKLTEIVDSYREGQ 160


>gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
 gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
          Length = 163

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YPP + QSAV+  L   Q++ G+VS A+   +A  L M  I V E+ TFY  +   P
Sbjct: 14  VAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHEVTTFYNMYNQQP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC+LR   K +E    K+         DG  + ++ EC GAC +AP+
Sbjct: 74  VG-KYKLNVCTNLPCLLRDGGKALEHLEQKLGISMGETTPDGLFTLQQCECLGACADAPV 132

Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177
           +++  ++    +  ++L++++D+    + 
Sbjct: 133 MLVNDRNMCSFMGNDKLDQLVDSLRAAEA 161


>gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae
           EF01-2]
 gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 165

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 82/156 (52%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE +       +++YP  + QSAV+  L   Q+++G VS  +  +VA+ L MA I V E
Sbjct: 2   MSEATLARFAREVAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC LRG  + ++    K+         DG  + + 
Sbjct: 62  VATFYNMYNRQPVG-QYKINVCTNLPCQLRGGRQALQHLERKLALASGGTTDDGLFTLQS 120

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
            EC GAC +AP++++   T    +  ++L++++D  
Sbjct: 121 CECLGACADAPVLLVNDRTMCSFMDGDKLDQLVDGL 156


>gi|197120283|ref|YP_002140710.1| NADH dehydrogenase I subunit E [Geobacter bemidjiensis Bem]
 gi|197089643|gb|ACH40914.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
          Length = 169

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N +I +Y        ++P+L   Q+  G++ R  I++VA  L++   ++  + TFY QF 
Sbjct: 20  NHIIDKY--LTLPGNLMPVLQGIQDSYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G R  ++VC  T C ++G E++ E    ++       ++D   ++E+V C GAC  
Sbjct: 78  LKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACLGACGM 136

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DTY  +T ++++EII+ ++
Sbjct: 137 APLAMVNDDTYGKMTVQKVDEIIETYN 163


>gi|58582855|ref|YP_201871.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624720|ref|YP_452092.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577692|ref|YP_001914621.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427449|gb|AAW76486.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368660|dbj|BAE69818.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522144|gb|ACD60089.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 175

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTVDGRVYLK 137

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|313672281|ref|YP_004050392.1| NADH dehydrogenase subunit e [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939037|gb|ADR18229.1| NADH dehydrogenase subunit E [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 164

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+  +Y   +   A IP+L + QE  G++S+  IE +   L+M+   +  + TFY QF
Sbjct: 16  IDEICEKYKGKK--GATIPVLQQVQEHYGYLSKEMIERIGENLNMSPHTLYGVLTFYAQF 73

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             +P G    ++VC  T C ++G  ++ EV   +   +      D   + EEV C GAC 
Sbjct: 74  YTTPRGKYV-IRVCRGTACHVKGSGRISEVVFEEFGIRNGETTPDIKFTLEEVSCIGACG 132

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP++MI   TY +LTPE+   I   ++  Q
Sbjct: 133 MAPVIMINDKTYGNLTPEQARSIFKEYAQKQ 163


>gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42]
 gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY]
 gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42]
 gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY]
          Length = 163

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 2/149 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + QSAV+  L   Q+++GWVS  +  V+A  L M  I V E+ TFY  +   P
Sbjct: 14  VAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHEVTTFYNMYNQQP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LR  +  +     K+        +DG  + ++ EC GAC +AP+
Sbjct: 74  VG-KYKLAVCTNLPCQLRRGQDALHHLEKKLGISMGETTADGLFTLQQCECLGACADAPV 132

Query: 150 VMIG-KDTYEDLTPERLEEIIDAFSTGQG 177
           +++  ++    +  ++L++++D     +G
Sbjct: 133 MLVNDRNMCSFMDDDKLDQMVDGLRAAEG 161


>gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 157

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  R +SA++  L  AQ ++GW++   IE VA+ + +  ++  E
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6]
 gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6]
          Length = 175

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + QSAV+  L  AQ+  GWVS  A + +A+ L M  I V E+ TFY  +   P
Sbjct: 25  VAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHEVTTFYNMYNQQP 84

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC+LR  +  +E    K+  +     +DG  + ++ EC GAC +AP+
Sbjct: 85  VG-QFKLNVCTNLPCLLRNGQAALEHLCQKLGVEDGGTTADGLFTVQKCECLGACADAPV 143

Query: 150 VMIG-KDTYEDLTPERLEEIIDAF 172
           +++  +     ++ ++L++++D  
Sbjct: 144 MLVNDRQMISYMSHDKLDQLVDTL 167


>gi|291298802|ref|YP_003510080.1| NADH-quinone oxidoreductase E subunit [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568022|gb|ADD40987.1| NADH-quinone oxidoreductase, E subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 230

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +++EE      E++ RYP  + +SA++P+L   Q Q+G++++  I   A ++ +   +V
Sbjct: 1   MAYTEEFRAQAREIMERYPEGKQRSALLPMLHLVQSQDGYITQDGIAFCAEMIGITKAQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             ++TFYT ++  P G    V VC  T C + G +K+ +  R  +         DG ++ 
Sbjct: 61  AAVSTFYTMYKREPTGDYL-VSVCTNTLCDVMGGQKVFDALREYLGVDHDETTGDGKITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           E  EC  AC  AP++ +  + ++   P+   ++      G+    RP P
Sbjct: 120 EHAECLAACDYAPVMTVNYEFFDKTNPDEAVQLAKNLRNGE----RPTP 164


>gi|325681308|ref|ZP_08160837.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
 gi|324106999|gb|EGC01286.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
          Length = 163

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  + E    + EVI+++        ++P L  AQ   G++     +++A+ L ++   V
Sbjct: 9   FQGTPEQEAQLKEVIAKHHDQ--PGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSEV 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L+P G +  + VC  T C ++G +K++E    K+  K     +DG  S 
Sbjct: 67  FGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFSI 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++++ +D Y  L P+++ +I+D++
Sbjct: 126 DSCRCVGACGLAPVMLVDEDVYGKLKPDQVAKILDSY 162


>gi|78224541|ref|YP_386288.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78195796|gb|ABB33563.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
          Length = 173

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N VI +Y        ++P+L   Q++ G+V +  I++VA  L++   ++  + TFY QF 
Sbjct: 25  NHVIDKY--LTLPGNLMPVLQGIQDEYGYVPKPTIDLVAERLNVYPSQIFGVLTFYAQFH 82

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G R  ++VC  T C ++G  +++E   +K+       + D   ++E+V C GAC  
Sbjct: 83  LKPRG-RYIIRVCVGTACHVQGAPRIVETFFDKLGISHAETSPDLRYTFEKVACLGACGM 141

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DT+  +T +++EEII  ++
Sbjct: 142 APLAMVNDDTFGKMTVQKVEEIIAEYN 168


>gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
           M045]
 gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
           M045]
          Length = 298

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+RYP SR  SA++P+L   Q +EG+V+R  +   A +L +    V  +ATFY+ ++ 
Sbjct: 35  EIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMRFCAELLGLTTAEVTAVATFYSMYRR 92

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    V VC  T C + G + +    +  +         DG ++ E +EC  AC  A
Sbjct: 93  RPSGDY-QVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDGKVTLEHIECNAACDFA 151

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+VM+  + +++ T E  + ++D    G
Sbjct: 152 PVVMVNWEFFDNQTVESAKRLVDELREG 179


>gi|193215668|ref|YP_001996867.1| NADH-quinone oxidoreductase subunit E [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089145|gb|ACF14420.1| NADH-quinone oxidoreductase, E subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 195

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P+   F +     +    SRYP  + ++AV+  L  AQ + GW+S  A+++VA  L+M 
Sbjct: 34  NPAEIVFDDADLQQIEAYKSRYP--KKEAAVMRTLWLAQTKFGWLSEDALKLVAKTLEMP 91

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +A+FYT +   P G + H+ VC    C L G  ++    + K   +     +DG
Sbjct: 92  PADVFGVASFYTMYFKKPKG-KTHLAVCTNISCSLCGGYEIYNYLKEKFGLENGDVTADG 150

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEII 169
            LS EE EC G+C  AP + +    Y E+LT E+LE  +
Sbjct: 151 KLSLEEAECLGSCGTAPAMQVNNGEYVENLTVEKLEAFL 189


>gi|188584738|ref|YP_001916283.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349425|gb|ACB83695.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 162

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E++++Y   +   A+I  L + QE  G++    ++ VA   DM   +V  +ATFY QF
Sbjct: 18  LEEILAQYKNEK--GALITALQKVQEFYGYLPEEGMQKVAEAFDMPESKVFGVATFYAQF 75

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    ++VC  T C +RG EK++     +++ +P     D   + E V C G C 
Sbjct: 76  HLQPRGEWV-IRVCTGTACHVRGAEKIMNKLIEELNIEPGETTEDLKFTLEPVACIGCCG 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP++M+  +T+  L P+++ EI+D + 
Sbjct: 135 LAPVIMVNDNTHGRLVPDQIPEILDKYK 162


>gi|171914656|ref|ZP_02930126.1| NADH dehydrogenase (ubiquinone), E chain [Verrucomicrobium spinosum
           DSM 4136]
          Length = 166

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 10/155 (6%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++EVI+ YP S+ +SAV+PLL   Q +  +++  A+  VA  L +  I+VLE+ TFY  F
Sbjct: 13  IDEVITHYPVSK-RSAVLPLLHLMQHEYRYITDDAVNWVAAKLGLQPIQVLEVVTFYPGF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCR-------NKIHQKPLHRNSDGTLSWEE 137
           + S  G + H++VC T  C + G  +L+E +C+       +  H  P+  ++DG  S E 
Sbjct: 72  RQSAPG-KFHIRVCRTLSCAMAGSYELMESLCKAADIDRSHVDHHHPIAVSADGKYSIEF 130

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            EC  +C   P+ M+  D +E + P+   E++  +
Sbjct: 131 AECLASCGFGPVCMVEDDFHESVKPQAAAELLKQY 165


>gi|302342221|ref|YP_003806750.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
           2075]
 gi|301638834|gb|ADK84156.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
           2075]
          Length = 154

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A+ ++E+I RYP       +I LL   Q   G++S  A++ V +   +   R   +ATFY
Sbjct: 5   AVQLDELIDRYPAK--PEYLIFLLQDIQAAYGYISPEAMDRVCDHAGVPKSRAYSVATFY 62

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L P G    ++VC  T C L+G ++L +    K+  KP   + D   S E V C G
Sbjct: 63  QSFSLKPKGEH-KIRVCMGTACHLKGAQRLADAVERKLGIKPDETSPDLKFSLEAVHCLG 121

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170
           AC  AP+V++  + +   TP +L++++D
Sbjct: 122 ACAMAPVVVVDDEYHAGATPGKLDKLLD 149


>gi|154498759|ref|ZP_02037137.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
           29799]
 gi|150272149|gb|EDM99353.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
           29799]
          Length = 164

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            + +P+L  AQE  G++      ++A  LD+    V  +A+FY QF ++P G R  + VC
Sbjct: 32  GSTMPVLQAAQEIFGYLPEEVQIMIAEGLDIPLSEVYGVASFYAQFSMNPKG-RYQISVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G   ++     K+  +P     DG  S +   C GAC  AP++M+G D Y  
Sbjct: 91  LGTACYVKGAADILAAVEKKLGIRPGSITPDGKFSLDACRCVGACGLAPVMMVGSDVYGR 150

Query: 160 LTPERLEEIIDAF 172
           LTP+++  I+D +
Sbjct: 151 LTPDQVGPILDKY 163


>gi|323702551|ref|ZP_08114214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532525|gb|EGB22401.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 161

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 3/137 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E++++Y       A+IP+L +AQE  G++    I+ +A  L +   RV  +ATFY QF L
Sbjct: 19  ELLTKYKEQP--GALIPVLQQAQEIFGYLGPEVIDQIAGELKIPPARVYGVATFYAQFHL 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  ++VC  T C +RG  K++E  + +   +P   + D   + E V C GAC  A
Sbjct: 77  QPRG-RHVIKVCQGTACHVRGGAKVLEAIKKQTGLEPGETSKDLRYTLETVACLGACGLA 135

Query: 148 PMVMIGKDTYEDLTPER 164
           P++M+ +DT   L+PE+
Sbjct: 136 PVMMVNEDTQGQLSPEK 152


>gi|289641423|ref|ZP_06473587.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508759|gb|EFD29694.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 270

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +EE+     ++I+RYP    +SA++PLL   Q ++G V+   +E  A++L +    V  
Sbjct: 3   LTEETRAAAADIIARYPSGHSRSALLPLLHLVQAEDGCVTSEGVEFCASLLGITQAEVSA 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  PVG    V VC    C L G E++      ++        +DGT++ E 
Sbjct: 63  VATFYTMYKRRPVGDWL-VSVCTNLSCALLGGEEVYARLSQELGVGHDQTTADGTITLEH 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            EC  AC  AP++ +  + ++ + P+   EI++A   G+    RP P
Sbjct: 122 AECLAACDYAPVLTVNYEFFDQVDPQSASEIVEALRRGE----RPAP 164


>gi|331699308|ref|YP_004335547.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326953997|gb|AEA27694.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 273

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 12/171 (7%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S S+ E +     E+I+RYP SR  SA++P+L   Q  EG VS+  I   A +LD+    
Sbjct: 34  SPSYDEVTRQRAKEIIARYPQSR--SALLPMLHLVQSVEGHVSQEGIRFCAELLDLTTAE 91

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPLHR----- 127
           V  +ATFYT ++ +P G    V VC  T C   G + +    + ++    +PL       
Sbjct: 92  VSAVATFYTMYKRTPCGEHL-VSVCTNTLCAALGGDDIYARLQARLGTEDRPLGHEETAG 150

Query: 128 --NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
              + G+++ E  EC  AC  AP++ +  + +++ T E  EE++DA   G+
Sbjct: 151 EPGTPGSITLEHAECLAACDLAPVIQVNYEYFDNQTVESAEELVDALRRGE 201


>gi|332285013|ref|YP_004416924.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
 gi|330428966|gb|AEC20300.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
          Length = 164

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++P  + QSA++  L  AQE++GWVS   I  VA  L++  I V E
Sbjct: 3   LSEQAYQKIDRELTKFPSDQQQSAIMAALTIAQEEKGWVSTEVIADVAAYLNVPAIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F    VG R  + VC   PC L    K  E  + K+         DG  +  E
Sbjct: 63  VATFYNMFNTHQVG-RFKITVCTNLPCALSDGVKAAEYVKQKLGIDFHETTPDGLFTLME 121

Query: 138 VECQGACVNAP-MVMIGKDTYEDLTPERLEEIID 170
            EC GAC +AP M+M  +     ++ E+++ ++D
Sbjct: 122 GECMGACGDAPVMLMNNRHMCVRMSSEKIDAMLD 155


>gi|332526751|ref|ZP_08402853.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332111154|gb|EGJ11186.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 161

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 2/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FSE +       ++++P  + QSAV+  L   Q ++G VS+ A E +A  L M  I V
Sbjct: 1   MNFSEATLARFAREVAKFPADQKQSAVMACLAIVQHEQGHVSQEAEEAIAAYLGMPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  +    VG +  + VC   PC LR  E  ++    K+  +P     DG  + 
Sbjct: 61  HEVTTFYNMYNQRRVG-KYKLNVCTNLPCQLRHGEHALDHVCKKLGVEPYGTTEDGLFTV 119

Query: 136 EEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAF 172
           +  EC GAC +AP++++  ++    ++ ERL+E+I+  
Sbjct: 120 QPSECLGACADAPVMLVNDREMLSFMSDERLDELIETL 157


>gi|169629224|ref|YP_001702873.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
           abscessus ATCC 19977]
 gi|169241191|emb|CAM62219.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
           abscessus]
          Length = 247

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           AI   E++ RYP  R  SA++PLL   Q ++G+V+ A IE  A  +++    V  +A+FY
Sbjct: 34  AIDAKEILDRYPSRR--SALLPLLHLVQSEDGYVTTAGIEFCARQVELTSAEVTAVASFY 91

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + ++  P G    V VC  T C + G + ++     ++  +P     DG ++ E +EC  
Sbjct: 92  SMYRREPTGDYL-VGVCTNTLCAVLGGDAILARLAGELGVRPGGTTEDGKVTLEHIECNA 150

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            C  AP++M+  + +++ TP+    ++     G 
Sbjct: 151 GCDYAPVLMVNWEFFDNQTPDGAAALVQGLRRGH 184


>gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 157

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + ES   ++  +++YP  R +SAV+  L  AQ ++GW++   IE VA+ + +A +   E
Sbjct: 2   LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLIE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815]
 gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum
           STM815]
          Length = 161

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L   QE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++  PVG +  + +C   PC L    G +   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETKPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGRFTL 121

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
           +E EC G+C +AP++++        ++ E+++++++  S
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELS 160


>gi|253702591|ref|YP_003023780.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
 gi|251777441|gb|ACT20022.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 168

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 83/147 (56%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N +I +Y        ++P+L   Q+  G++ R  I++VA  L++   ++  + TFY QF 
Sbjct: 20  NHIIDKY--LTLPGNLMPVLQGIQDAYGYIPRPTIDLVAERLNVYPSQIYGVLTFYAQFH 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G +  ++VC  T C ++G E++ E    ++       ++D   ++E+V C GAC  
Sbjct: 78  LKPRG-KYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACLGACGM 136

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DTY  +T ++++EII+ ++
Sbjct: 137 APLAMVNDDTYGKMTVQKVDEIIETYN 163


>gi|227488704|ref|ZP_03919020.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542297|ref|ZP_03972346.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091365|gb|EEI26677.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181897|gb|EEI62869.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 245

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 4/178 (2%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +   ++ + ++     + E+  RYP    QSA++P+L   Q  +G VS   +  +A++L 
Sbjct: 21  DLADTTTNLTDADVADLKELAGRYP--NPQSALLPMLHLVQSVDGKVSGEGVRRIASLLH 78

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRN 128
           M   +V+ +ATFY+ +    VG    V VC +  C   G + + +  +  +         
Sbjct: 79  MTEAQVIGVATFYSMYHTHEVGKHL-VGVCTSALCATMGGDIIYDAVKRHLELDGEEDTT 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           SDG  + E +EC  AC  AP++M+  +  +++TP++  EI+D    GQ  +   GP+I
Sbjct: 138 SDGMFTLERIECNAACDFAPILMLNWEYMDNMTPKKAIEILDKLRDGQEVSSTRGPKI 195


>gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum]
          Length = 627

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+PLL    E++ ++S A +  ++ +  ++   +L I TFY  F   P G  + V+V
Sbjct: 27  EQAVLPLLHYYMEKKNYISEADVSRISQLTGLSVSDILGIGTFYQHFVFHPTGKNS-VRV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C TTPC+ RG +K  E     +         DG  +    +C G C  AP   I  D Y 
Sbjct: 86  CLTTPCLFRGGKKTFETLSKSLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 145

Query: 159 DLTPERLEEIIDAFSTGQ 176
            + PE++  I+D +  G+
Sbjct: 146 GIPPEKIPSILDEYRKGK 163


>gi|302523881|ref|ZP_07276223.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
 gi|302432776|gb|EFL04592.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
          Length = 287

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P++  F  ++     E+I+RYP SR  SA++P+L   Q  +G+VS+  I   A  LD+  
Sbjct: 46  PAADVFDADTHREAKEIIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCARHLDLTD 103

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPL-HRNS 129
             V  +ATFYT ++  P G    V VC  T C   G + +    +  +   +KPL H  +
Sbjct: 104 AEVTAVATFYTMYKRRPCGEHL-VSVCTNTLCAALGGDDIYRKLQTHLGSAEKPLGHEET 162

Query: 130 DGT------LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            GT      ++ E  EC  AC   P++ +  + +++ TPE+   ++DA   G+    +P 
Sbjct: 163 AGTPGEPGSITLEHAECLAACDLGPVLQVNYEYFDNQTPEQAVALVDALQAGK----KPA 218

Query: 184 P 184
           P
Sbjct: 219 P 219


>gi|39995451|ref|NP_951402.1| NADH dehydrogenase I subunit E [Geobacter sulfurreducens PCA]
 gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
 gi|298504450|gb|ADI83173.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
          Length = 173

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N VI +Y        ++P+L   Q++ G+V R  I++VA  L++   ++  + TFY QF 
Sbjct: 25  NHVIDKY--LTLPGNLMPVLQGIQDEYGYVPRPTIDLVAERLNVYPSQIFGVLTFYAQFH 82

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G R  ++VC  T C ++G  ++++    K+         D   ++E+V C GAC  
Sbjct: 83  LKPRG-RFIIRVCVGTACHVQGAPRIVDTFFEKLGIGHAETTPDLRYTFEKVACLGACGM 141

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DT+  +T +++EEII  ++
Sbjct: 142 APLAMVNDDTFGKMTVQKVEEIIAEYN 168


>gi|326201388|ref|ZP_08191260.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
           DSM 2782]
 gi|325988956|gb|EGD49780.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
           DSM 2782]
          Length = 164

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 84/154 (54%), Gaps = 3/154 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           ++E+++ + ++I +Y  +R   A+IP+L   QE  G++    ++ ++  L+++   +  +
Sbjct: 11  TDENSLKLGKIIDKYKETR--GALIPVLHEVQEVYGYLPEDVLKEISEKLNVSLAEIYGV 68

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFYTQF L+P G R  + +C  T C ++G   +++  + K+         DG  S +  
Sbjct: 69  VTFYTQFSLNPKG-RFKINICMGTACYVKGSGDILDKFKQKLGIDVGQCTEDGKFSLDAC 127

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            C GAC  AP++MI  D +  L P+ ++ I+  +
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLVPDDVDAILAKY 161


>gi|51244536|ref|YP_064420.1| NADH dehydrogenase subunit E [Desulfotalea psychrophila LSv54]
 gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxidoreductase, 24 kDa subunit
           [Desulfotalea psychrophila LSv54]
          Length = 154

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   Q + G++   A+  VA+ L +   RV  +ATFY QF+ +PVG +  V VC  
Sbjct: 19  LIPILQNVQHKFGYLPEDAMREVADFLRIPESRVYGVATFYEQFRFTPVG-KTKVTVCRG 77

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG +K+I     ++  K      DG  + E   C G C  AP VMI ++   +LT
Sbjct: 78  TACHVRGAQKIIASVEKRLGIKEGETTEDGEYTLETAACIGCCALAPCVMINEEVEANLT 137

Query: 162 PERLEEIID 170
           P+++    D
Sbjct: 138 PKKMNAYFD 146


>gi|291004455|ref|ZP_06562428.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 244

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S  F E+      ++I RYP SR  SA++P+L   Q  +G VS   IE  A  LD++  
Sbjct: 7   TSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTA 64

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL-------IEVCRNKIHQKPLH 126
            V  +ATFYT ++  P G    V VC  T C   G + +       + V  ++    P  
Sbjct: 65  EVSAVATFYTMYKRKPCGQHL-VSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTP-- 121

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              +G+L+ E  EC  AC   P++ +  + Y++ TPE+  E++ A   G+    +P P
Sbjct: 122 -GEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGE----KPAP 174


>gi|256380661|ref|YP_003104321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
           DSM 43827]
 gi|255924964|gb|ACU40475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
           DSM 43827]
          Length = 254

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P +  F + +      +I+RYP  R  SA++P+L   Q  EG VS A I   A++LD++ 
Sbjct: 15  PGAVVFDQGTTDRARAIIARYPVPR--SALLPMLHLVQSVEGHVSTAGIAFCADLLDLSA 72

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHR--- 127
             V  +ATFYT ++  P G    V VC  T C   G + +    R+ +    KPL     
Sbjct: 73  AEVSAVATFYTMYKRKPCGEHL-VSVCTNTLCAALGGDDIYAKLRDHLGADGKPLGHEET 131

Query: 128 ----NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                + G+++ E  EC  AC  AP+V +  + +++ TP+   E++ +   G+
Sbjct: 132 SGEPGAPGSVTLEHAECLAACDLAPVVQVNYEYFDNQTPDGALEMVKSLQAGE 184


>gi|42524474|ref|NP_969854.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
 gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
          Length = 159

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIR 74
           F  S+     V   ++RY     +SA+IP L  AQ E  G+++   I  ++ ++D+   R
Sbjct: 4   FKLSDSGLAAVKSELARYEAK--ESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           + E+  FYT F   PVG + HVQVC    C L G  ++ +   +++  K     +DG  +
Sbjct: 62  INEVFKFYTMFNQKPVG-KYHVQVCTNISCALEGGREMAKHICHELGVKFDQVTADGRFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPE 163
             +VEC G+C  APM+ +    +E LTPE
Sbjct: 121 VSKVECLGSCGTAPMMQVNDSYHEKLTPE 149


>gi|312878985|ref|ZP_07738785.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
 gi|310782276|gb|EFQ22674.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
          Length = 155

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +IP+L  AQ   G++   A++ ++  L +    +  + TFY QF L P G R  ++V
Sbjct: 22  KGGLIPILQGAQNAFGYLPAEALQTISEELTVPLAEIYGVVTFYAQFHLKPRG-RHIIRV 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  KL++  +  +  +      D   + E V C GAC  AP++M+  DT+ 
Sbjct: 81  CRGTACHVRGSLKLLQTVKESLKVEENGTTEDLRYTLEPVACIGACGLAPVIMVDSDTHG 140

Query: 159 DLTPERLEEIIDAF 172
            L PE+L+EI+D +
Sbjct: 141 RLVPEKLKEILDHY 154


>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille]
 gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE++   ++  ++++PP + QSAV+  L  AQ++  W+    ++ VA+ L M  I V E
Sbjct: 3   LSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G EK     + K+         D   +  E
Sbjct: 63  VATFYNMYNTKPVG-KFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLVE 121

Query: 138 VECQGACVNAPMVMIG 153
            EC GAC +AP++++ 
Sbjct: 122 GECMGACGDAPVMLVN 137


>gi|134103326|ref|YP_001108987.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915949|emb|CAM06062.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 241

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S  F E+      ++I RYP SR  SA++P+L   Q  +G VS   IE  A  LD++  
Sbjct: 4   TSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDLSTA 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL-------IEVCRNKIHQKPLH 126
            V  +ATFYT ++  P G    V VC  T C   G + +       + V  ++    P  
Sbjct: 62  EVSAVATFYTMYKRKPCGQHL-VSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGTP-- 118

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              +G+L+ E  EC  AC   P++ +  + Y++ TPE+  E++ A   G+    +P P
Sbjct: 119 -GEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGE----KPAP 171


>gi|145589230|ref|YP_001155827.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047636|gb|ABP34263.1| NADH dehydrogenase subunit E [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 168

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 2/163 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++   S+++   ++  I++YP    QSAV+  L+ AQ + GWVS   IE VA IL+M  I
Sbjct: 3   TTLQLSDKTLADIHRNIAKYPAEHKQSAVMACLIAAQTEVGWVSPEVIEAVAQILEMPTI 62

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  +   P+G +  + +C   PC L   E      +  +          GT 
Sbjct: 63  AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAATYLKETLGIGFNETTPCGTF 121

Query: 134 SWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTG 175
           + +E EC GAC ++P++++  K     ++ E+++ ++     G
Sbjct: 122 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAG 164


>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1]
 gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+E+   ++  +++YP  + QSAV+  L  AQ + GW+     + +A+ + M  + V E
Sbjct: 3   LSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  F  SPVG +  + VC   PC+L G E+     + K+        +DG  +  E
Sbjct: 63  VATFYNMFNTSPVG-KHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLME 121

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 122 GECMGACGDAPVMLV 136


>gi|124266600|ref|YP_001020604.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Methylibium petroleiphilum PM1]
 gi|124259375|gb|ABM94369.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Methylibium petroleiphilum PM1]
          Length = 162

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + SE +    +  +++YP  + QSAV+  L   Q+++G VS  A   +A  L M  I V
Sbjct: 1   MTLSEATKARFDREVAKYPAEQRQSAVMACLAIVQQEQGHVSADAERAIAAHLGMPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  +   PVG R  + VC   PC LR  E  ++    K+  +P    +DG  + 
Sbjct: 61  HEVTTFYNMYNQQPVG-RFKLNVCTNLPCQLRDGETALQHVCKKLGVEPYGSTADGVFTV 119

Query: 136 EEVECQGACVNAPMVMIG-KDTYEDLTPERLEE 167
           +  EC GAC +AP++++  +     +T +RL+E
Sbjct: 120 QPSECLGACADAPVMLLNDRQMLSFMTEQRLDE 152


>gi|325960238|ref|YP_004291704.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
           sp. AL-21]
 gi|325331670|gb|ADZ10732.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
           sp. AL-21]
          Length = 158

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +NE++S Y  ++  S +IPLL   Q   G++S  +I+ V+    ++   +  +ATFYTQF
Sbjct: 5   LNEILSTYEGTK--SELIPLLQDVQANLGYLSEESIKDVSKFTGVSESEIYGVATFYTQF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +PVG + H+ VC  T C ++G  ++IE     +  K      D   S E V C G C 
Sbjct: 63  RFTPVG-KKHIMVCKGTACHVKGAPQIIEGIERHLGIKEGEVTFDMEYSLESVGCLGCCA 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP  MI  D   ++T + +++I 
Sbjct: 122 LAPCAMINDDVESNMTLKDVKKIF 145


>gi|146296865|ref|YP_001180636.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410441|gb|ABP67445.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 160

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGGTTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L PE +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLAPEDIENILSRY 160


>gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC
           13950]
          Length = 252

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 5/169 (2%)

Query: 10  EFQPSSFSFSEESAIWVN--EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  P+S+     + + V+  E++ RYP  R  SA++PLL   Q Q+ +++ A +E     
Sbjct: 26  EGAPTSYPPEVRARLEVDAKEIMGRYPEKR--SALLPLLHLVQAQDSYLTPAGLEFCGEQ 83

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L ++   V  +A+FYT ++  P G    V VC  T C + G + + +  +  +       
Sbjct: 84  LGLSGAEVSAVASFYTMYRRGPTGDYL-VGVCTNTLCAVMGGDAIFDALKEHLGIGNDET 142

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +DG+++ + +EC  AC  AP+VM+  + +++ T E   E++D+  +G+
Sbjct: 143 TADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESARELVDSLRSGE 191


>gi|220931028|ref|YP_002507936.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
 gi|219992338|gb|ACL68941.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
          Length = 167

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           VNE+I ++   + QS +IP+L   Q++  ++    +  +A ++D++   V  +ATFY QF
Sbjct: 14  VNEIIEKH--GKDQSKLIPILQEVQKEYRYLPEEILTYIATVMDLSPATVYGVATFYAQF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144
            L P G +  + VC  T C + G   ++   R K++ +     +D  + + E V C GAC
Sbjct: 72  SLDPKG-KYVINVCDGTACHVSGSLPVLNAIRKKLNLEDGKFTTDDLMFTVETVSCLGAC 130

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170
             AP+V I    Y  +TPE +E IID
Sbjct: 131 GLAPVVTINGKVYGKMTPEAIEVIID 156


>gi|258593431|emb|CBE69770.1| NADH-quinone oxidoreductase subunit E 2 (NADH dehydrogenase I
           subunit E 2) (NDH-1 subunit E 2) [NC10 bacterium 'Dutch
           sediment']
          Length = 171

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++SRYP  R  SA++PL+   QE+ G+++  A+  +A  LD+  I+V E+A FY  F
Sbjct: 6   IQRILSRYPERR--SALLPLMHLCQEEGGYLTADAMRELAARLDLPPIQVAEVAMFYDMF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L P G R  + VC    C L G E++I      +         DG  + + VEC  AC 
Sbjct: 64  RLKPGGQR-EIWVCHNLSCALLGAEQVIRRLEEVLGVSAGETTPDGLFTIKRVECLAACG 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP + +G D Y  ++   +E ++
Sbjct: 123 RAPAIQVGSDYYGPVSHGEVETLV 146


>gi|322421846|ref|YP_004201069.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320128233|gb|ADW15793.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 168

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N++I +Y        ++P+L   Q+  G+V +  I++VA  L++   ++  + TFY QF 
Sbjct: 20  NQIIDKY--LTLPGNLMPVLQGIQDAYGFVPKPTIDLVAERLNVYPSQIYGVLTFYAQFH 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L P G R  ++VC  T C ++G E++ E    ++         D   ++E+V C GAC  
Sbjct: 78  LKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETTEDLRYTFEKVACLGACGM 136

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
           AP+ M+  DT+  +T ++++EII+ ++
Sbjct: 137 APLAMVNDDTFGKMTVQKVDEIIETYN 163


>gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM
           43247]
 gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM
           43247]
          Length = 706

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP SR  SA++PLL   Q ++G+++RA I   A  LD+   +V  +ATFY+ ++ +P G
Sbjct: 55  RYPQSR--SALLPLLHLVQSEDGFITRAGILFCAAQLDLTAAQVASVATFYSMYRRNPTG 112

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + VC  T C   G + ++      +   P    +D  ++ E VEC  AC  AP+VM
Sbjct: 113 EYL-IGVCTNTLCATLGGDDILGSVCEHLGIDPGDTTADSRITVEHVECNAACDFAPVVM 171

Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175
           +  + +++ TP+   E+++    G
Sbjct: 172 VNWEFFDNQTPDTAIELVEDLRAG 195


>gi|121998540|ref|YP_001003327.1| NADH-quinone oxidoreductase subunit E [Halorhodospira halophila
           SL1]
 gi|121589945|gb|ABM62525.1| NADH dehydrogenase subunit E [Halorhodospira halophila SL1]
          Length = 170

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 26  VNEVISRYPPSRC--QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFY 82
           ++  +++YP       SA+IP L   Q+  G W+ R+ +   A+ + M      E+ATFY
Sbjct: 19  IDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRASAFEVATFY 78

Query: 83  TQFQLS-PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW-EEVEC 140
           + F L  PVG R  V  C    C L G ++L+     K+  +      DG ++   E EC
Sbjct: 79  SMFHLDEPVG-RHKVNFCTNISCCLNGADELVAYAEEKLGIRLGETTPDGRITLVREEEC 137

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             AC  APM+++    Y  LT ER++EI+D  S
Sbjct: 138 LAACTRAPMMVVDGHYYTHLTRERIDEILDGLS 170


>gi|146295663|ref|YP_001179434.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409239|gb|ABP66243.1| NADH dehydrogenase subunit E [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 174

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S+F   +     ++ V+  Y   +  S +I +L + QE   ++   A+  ++    +   
Sbjct: 12  SNFKNQKVDLSLLDPVLDEYKGEK--SNIIAILQKTQEIYRFLPLDALNYISEKTGVKKA 69

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           ++  IATFY QF+L PVG    +Q C  T C + G E++     ++++ KP     DG  
Sbjct: 70  KIYGIATFYAQFRLKPVGKYVILQ-CQGTACHVNGSEEIKNALCDELNIKPGDTTEDGMF 128

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + EEV C G C  AP++MI  +TY  LTP++  EII
Sbjct: 129 TLEEVACLGCCSLAPVMMINGETYGKLTPDKAREII 164


>gi|320354224|ref|YP_004195563.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
 gi|320122726|gb|ADW18272.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
          Length = 152

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IPLL   Q++  ++S  A++ VA+ L+++   V  +ATFY QF+  P G   H++VC  
Sbjct: 22  LIPLLQEVQDRFRYLSPEAVQAVADHLELSANDVYGVATFYAQFRFVPPGLH-HIKVCEG 80

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG ++++E         P   +S+G  S E V C G+C  AP+V++    Y  +T
Sbjct: 81  TACHVRGSDRILESISRATGIAPGQTSSNGQFSLERVACFGSCALAPVVVVDDKVYGRMT 140

Query: 162 PERLEEIID 170
             +  ++I+
Sbjct: 141 AAKTNKLIE 149


>gi|291613542|ref|YP_003523699.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583654|gb|ADE11312.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 161

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S++    +++ + +YP  + QSAV+  L   Q+++GW++   +  +A  + M  + V E
Sbjct: 2   LSQQITTLIDKELKKYPADQRQSAVMAALRFVQDEKGWIAPDDMADIAAYIGMPQMAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L P+G +  + VC    C L G ++ +     ++        +DG     E
Sbjct: 62  VATFYHMYNLKPMG-KYTLTVCTNLSCQLCGSDETLAHLNKRLGIGLGEVTADGKYGLRE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQ 176
            EC GACV+APM  I  K     LT E++++I+     GQ
Sbjct: 121 GECMGACVDAPMFTINNKKLCGRLTSEKIDQILAELDGGQ 160


>gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 244

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           +   E+I RYP  R  SA++PLL   Q ++ +++ A +   A+ L +    V  +A+FYT
Sbjct: 34  VDAKEIIGRYPDRR--SALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYT 91

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++  P G    V VC  T C + G + + +  +  +        SDG ++ + +EC  A
Sbjct: 92  MYRRRPTGEYL-VGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAA 150

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+VM+  + +++ TPE   E++D+  +
Sbjct: 151 CDYAPVVMVNWEFFDNQTPESARELVDSLRS 181


>gi|147678984|ref|YP_001213199.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146275081|dbj|BAF60830.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 162

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +IP+L  AQ   G++ +  ++ ++  L++ + +V  +ATFY QF L P G R  ++V
Sbjct: 29  KGGLIPVLQEAQNIYGYLPKEVLQQISKELNVPFSKVFGVATFYAQFHLKPRG-RNIIRV 87

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  K+ E  R+ +         D   + E V C GAC  +P +M+  DT+ 
Sbjct: 88  CLGTACHVRGGAKIYEAVRDHLGISHGETTDDLRYTIENVACIGACGLSPCMMVNNDTHG 147

Query: 159 DLTPERLEEIIDAF 172
            L P R+  I+D +
Sbjct: 148 RLVPSRVPAILDQY 161


>gi|258651220|ref|YP_003200376.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
           multipartita DSM 44233]
 gi|258554445|gb|ACV77387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
           multipartita DSM 44233]
          Length = 249

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RR+    F  +   F E +     E+I+RYP SR  SA++PLL   Q  EG VS+  IE 
Sbjct: 6   RRIGVPVFLDTGVVFDELTHGRAAEIIARYPMSR--SALLPLLHLVQSVEGCVSQQGIEF 63

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--- 120
            A  L +    V  +ATFYT ++ +P G    V VC    C   G + +      ++   
Sbjct: 64  CAGQLGLTEAEVSAVATFYTMYKRTPCGEHL-VSVCTNALCAALGGDAIYATLSRRLGVG 122

Query: 121 -HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
             Q      + G+++ E  EC  AC +AP++ +  + +++ TP+   +++    +G+   
Sbjct: 123 HEQTAGEPGTPGSITLEHAECLAACDHAPVLTVNYEYFDNQTPDSALDLLTGLQSGE--- 179

Query: 180 IRPGP 184
            RP P
Sbjct: 180 -RPHP 183


>gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
 gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
          Length = 655

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 23/175 (13%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E I+ YP S+ +SA +PLL   QE  G++S  AI  +A  L++  I +LE+ TFY  F
Sbjct: 11  IDEAITHYPASK-RSASLPLLHLWQEHFGFISDEAISWIAQKLELQPINILELVTFYPMF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC------------------RNKIHQKPLHR 127
           +  P G R H++VC T  C + G  +L E                     N  H  P+  
Sbjct: 70  RREPAGKR-HIRVCRTLSCAMAGSYELKERIAAAAGIDLKKWAEEGAHHANAGHGNPIAV 128

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           + DG  S E VEC  +C +AP+ M+  +  E++   +LE+        + D   P
Sbjct: 129 SPDGQYSIEFVECLASCGSAPVAMVDDNFKENV---KLEDAAKLLKLQRSDATMP 180


>gi|171463530|ref|YP_001797643.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193068|gb|ACB44029.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 167

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++   S+++   ++  I++YPP   QSAV+  L+ AQ + GWVS   IE VA IL+M  I
Sbjct: 3   TTLQLSDKTMADIHRNIAKYPPEHKQSAVMACLIAAQIEVGWVSPEVIETVAQILEMPSI 62

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  +   P+G +  + +C   PC L   E    + +  +          GT 
Sbjct: 63  AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAAYL-KETLGIDYNETTPCGTF 120

Query: 134 SWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170
           + +E EC GAC ++P++++  K     ++ E+++ +++
Sbjct: 121 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLN 158


>gi|237737512|ref|ZP_04567993.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229419392|gb|EEO34439.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 165

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S++I +L +AQE  G++     E +A  +++   +V  + +FY  F + P G +  + V
Sbjct: 28  KSSLIIILHKAQEIFGYIPEEVQEFIAEKIEVPVSKVYGVVSFYNFFSMEPKG-KYPISV 86

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG EK++E  + ++  K      DG  S + + C GAC  AP++++GKD + 
Sbjct: 87  CTGTACYVRGAEKILEALQKELGLKLGGVTEDGLFSLDSLRCVGACGLAPVMLVGKDVHG 146

Query: 159 DLTPERLEEIIDAFST 174
            + PE +++II+ +  
Sbjct: 147 KVKPEDVKKIIENYKN 162


>gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 302

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++RYP  R  S ++P+L   Q  +G+VS   I   A  L +    V  +ATFYTQ++  
Sbjct: 18  IVARYPDPR--SGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAEVSAVATFYTQYKRH 75

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P GT   V VC  T C + G + + +     +         DG ++ E VEC  AC  AP
Sbjct: 76  PNGTYT-VGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITLERVECNAACDYAP 134

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
           ++M+  + +++ TPE    + D    G+   +RP    D +
Sbjct: 135 VMMVNWEFFDNQTPESAAAVADDLRAGK--PVRPTRGADSV 173


>gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv]
 gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551]
 gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97]
 gi|121639032|ref|YP_979256.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663004|ref|YP_001284527.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
 gi|148824343|ref|YP_001289097.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis F11]
 gi|215405147|ref|ZP_03417328.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 02_1987]
 gi|215413016|ref|ZP_03421717.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 94_M4241A]
 gi|215428606|ref|ZP_03426525.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T92]
 gi|215432108|ref|ZP_03430027.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|215447439|ref|ZP_03434191.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|218754929|ref|ZP_03533725.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis GM 1503]
 gi|219559195|ref|ZP_03538271.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T17]
 gi|224991524|ref|YP_002646213.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800183|ref|YP_003033184.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233768|ref|ZP_04927093.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis C]
 gi|254365774|ref|ZP_04981819.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552240|ref|ZP_05142687.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188190|ref|ZP_05765664.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CPHL_A]
 gi|260202295|ref|ZP_05769786.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T46]
 gi|260206488|ref|ZP_05773979.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis K85]
 gi|289444713|ref|ZP_06434457.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T46]
 gi|289448829|ref|ZP_06438573.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555422|ref|ZP_06444632.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           605]
 gi|289571360|ref|ZP_06451587.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T17]
 gi|289575861|ref|ZP_06456088.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           K85]
 gi|289746958|ref|ZP_06506336.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
           02_1987]
 gi|289751827|ref|ZP_06511205.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T92]
 gi|289755268|ref|ZP_06514646.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|289759279|ref|ZP_06518657.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|289763332|ref|ZP_06522710.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis GM 1503]
 gi|294993128|ref|ZP_06798819.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 210]
 gi|297635792|ref|ZP_06953572.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN 4207]
 gi|297732789|ref|ZP_06961907.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN R506]
 gi|298526623|ref|ZP_07014032.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis 94_M4241A]
 gi|306777466|ref|ZP_07415803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu001]
 gi|306782192|ref|ZP_07420529.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu002]
 gi|306786012|ref|ZP_07424334.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790377|ref|ZP_07428699.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu004]
 gi|306799102|ref|ZP_07437404.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu006]
 gi|306804946|ref|ZP_07441614.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809135|ref|ZP_07445803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu007]
 gi|306969237|ref|ZP_07481898.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu009]
 gi|306973584|ref|ZP_07486245.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu010]
 gi|307081293|ref|ZP_07490463.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu011]
 gi|307085895|ref|ZP_07495008.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu012]
 gi|313660122|ref|ZP_07817002.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN V2475]
 gi|54037921|sp|P65574|NUOE_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|54041672|sp|P65573|NUOE_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|1781219|emb|CAB06290.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN E) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN E) [Mycobacterium bovis AF2122/97]
 gi|121494680|emb|CAL73161.1| Probable NADH dehydrogenase I (chain E) nuoE [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599297|gb|EAY58401.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis C]
 gi|134151287|gb|EBA43332.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507156|gb|ABQ74965.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
 gi|148722870|gb|ABR07495.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis F11]
 gi|224774639|dbj|BAH27445.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321686|gb|ACT26289.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417632|gb|EFD14872.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T46]
 gi|289421787|gb|EFD18988.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440054|gb|EFD22547.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           605]
 gi|289540292|gb|EFD44870.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           K85]
 gi|289545114|gb|EFD48762.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T17]
 gi|289687486|gb|EFD54974.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
           02_1987]
 gi|289692414|gb|EFD59843.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T92]
 gi|289695855|gb|EFD63284.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|289710838|gb|EFD74854.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis GM 1503]
 gi|289714843|gb|EFD78855.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|298496417|gb|EFI31711.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis 94_M4241A]
 gi|308214178|gb|EFO73577.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu001]
 gi|308324953|gb|EFP13804.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu002]
 gi|308329369|gb|EFP18220.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333198|gb|EFP22049.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu004]
 gi|308340529|gb|EFP29380.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344469|gb|EFP33320.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348465|gb|EFP37316.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu008]
 gi|308353095|gb|EFP41946.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu009]
 gi|308357068|gb|EFP45919.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu010]
 gi|308361022|gb|EFP49873.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364630|gb|EFP53481.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu012]
 gi|326902627|gb|EGE49560.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           W-148]
 gi|328459920|gb|AEB05343.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           4207]
          Length = 252

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           +   E+I RYP  R  SA++PLL   Q ++ +++ A +   A+ L +    V  +A+FYT
Sbjct: 42  VDAKEIIGRYPDRR--SALLPLLHLVQGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYT 99

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++  P G    V VC  T C + G + + +  +  +        SDG ++ + +EC  A
Sbjct: 100 MYRRRPTGEYL-VGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAA 158

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+VM+  + +++ TPE   E++D+  +
Sbjct: 159 CDYAPVVMVNWEFFDNQTPESARELVDSLRS 189


>gi|312200063|ref|YP_004020124.1| NADH-quinone oxidoreductase E subunit [Frankia sp. EuI1c]
 gi|311231399|gb|ADP84254.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EuI1c]
          Length = 274

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS  +     EVI+RYP  R +SA++PLL   Q +EG V+   I+  A  L +    V  
Sbjct: 39  FSAATVAAAAEVIARYPVGRQRSALLPLLHLVQAEEGCVTAEGIDFCAGQLGITAAEVQA 98

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  PVG    V VC    C L G + + +    K+        +DGT++ E 
Sbjct: 99  VASFYTMYKRHPVGDWL-VSVCTNLSCSLVGGQDVYDRLSKKLGVGHDQTTADGTITLEH 157

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            EC  AC  AP++ +  + Y+ +  E  E I++A + G+
Sbjct: 158 AECLAACDYAPVMTVNYEFYDGVDTEAAEGIVEALARGE 196


>gi|319779202|ref|YP_004130115.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
           MCE9]
 gi|317109226|gb|ADU91972.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
           MCE9]
          Length = 219

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 2/161 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ++   ++  + +YP  + QSAV+  L  AQ +  WVS   ++ +A  L+M  + V E
Sbjct: 3   LSNKAYELIDAELKKYPEDQRQSAVMSALRIAQTELNWVSPEVVQDIATYLNMPVMAVQE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  ++L PVG +  + VC   PC LR   + I   + K+       + DG ++ + 
Sbjct: 63  VATFYNMYELQPVG-KYKITVCTNLPCALREGVQTINYLQEKLGIGIDETSQDGLITIKS 121

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQG 177
            EC GAC ++P+++I        +   R++E+ID     +G
Sbjct: 122 GECMGACGDSPVLLINNHHMCVRMDKARIDELIDDIYKEEG 162


>gi|91203918|emb|CAJ71571.1| similar to to proton-translocating NADH dehydrogenase I, 24 kDa
           subunit (NuoE) [Candidatus Kuenenia stuttgartiensis]
          Length = 164

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 6/155 (3%)

Query: 19  SEESAIWVN---EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           +E  A++++   +V+ +Y   R   ++IP+L   Q   G++    ++ V+  L+++   +
Sbjct: 9   AENEALYLSKTEDVLEKYKHGR--GSLIPILQTIQTAYGYLPEKVVDFVSERLNISVNEI 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           + +ATFY QF + P G R  ++ C  T C ++G +++IE    K+         D   + 
Sbjct: 67  IGVATFYAQFHMRPRG-RHIIKACSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFTL 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           EEV C GAC  AP++M+ +D Y  L    +  IID
Sbjct: 126 EEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIID 160


>gi|111075025|gb|ABH04875.1| NAD(P)H-quinone oxidoreductase 24 kDa subunit [Heliobacillus
           mobilis]
          Length = 171

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++  YP    Q   + +L   Q++  ++ R ++E++A+ L++   ++  +ATFY    L 
Sbjct: 15  ILEGYPKE--QRYTLAMLQDIQKEFQFIPRESMELIADYLELPLSKIYSLATFYKALSLR 72

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    +++C  T C +R  + L       +  +P     DG  S E V C GAC  AP
Sbjct: 73  PKGKHV-IKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMVNCLGACAIAP 131

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +++I +  Y  +TP +L+EII  +    G + R G
Sbjct: 132 VIVIDETFYGKVTPAKLQEIIAQYGDAFGQSDRSG 166


>gi|150390844|ref|YP_001320893.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149950706|gb|ABR49234.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 163

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E+   ++E+I R+  +    ++IP+L   QE   ++ +  + V+A   D++  ++  +A
Sbjct: 5   KENGDKIDEIIERHRHN--PGSIIPILQEIQEVFNYLPKDILAVIAEKTDISPAKIYGVA 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF+L PVG    + +C  T C + G +K+ E   N++  +      DG  +   V 
Sbjct: 63  TFYKQFRLKPVGNYL-ILLCQGTACHVNGSKKIEETLYNELKIRDGETTEDGLFTLNNVA 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C G C  +P++MI ++TY  L PE++ +II
Sbjct: 122 CLGCCSLSPVMMINEETYGSLVPEQVIKII 151


>gi|289523905|ref|ZP_06440759.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502561|gb|EFD23725.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 177

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
            +IPLL R QE  G++ + A+  ++ +L + Y +V  +ATFY QF L+P G R  +Q C 
Sbjct: 46  GLIPLLQRTQEVIGYLPKEALVALSEMLHIPYSKVFGVATFYAQFHLTPRG-RHVIQQCD 104

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G  ++  V   K+   P     D   ++E V C G+C  AP  MI       L
Sbjct: 105 GTACHVKGGPRIRRVIEEKLGISPGETTEDLKATYEIVYCLGSCGLAPAAMIDGKVIGRL 164

Query: 161 TPERLEEIIDAF 172
           T E+++ I+D+ 
Sbjct: 165 TQEKMKRILDSM 176


>gi|312144192|ref|YP_003995638.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904843|gb|ADQ15284.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 160

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           VNE++ RY   + +  +IP+L  AQE+ G++    +  +A  L+++  +V  + TFY+QF
Sbjct: 16  VNEILGRY--EKKERYLIPVLQEAQEEYGYLPEEVLTEIALRLNLSLSQVYGVVTFYSQF 73

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    ++VC  T C +RG  +++   + ++         D   + E V C GAC 
Sbjct: 74  HQEPRGNNI-IRVCMGTACHVRGGGQILSALKEELEIDSGETTDDLNFTLESVACIGACG 132

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++M+  DT+  L PE +  I+  +
Sbjct: 133 LAPVIMVNDDTHGRLIPEEIPSILAKY 159


>gi|218780401|ref|YP_002431719.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761785|gb|ACL04251.1| NADH-quinone oxidoreductase, E subunit-like protein (NuoE)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 161

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
            +IPLL   QE+ G+V   +IE +A  L++    V  + TFY  F L P G    ++VC 
Sbjct: 24  GLIPLLQAVQEEFGYVPPESIEPIAEALNIPPSEVQGVVTFYAGFSLKPKGKYV-LRVCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G + ++   +  +H +    + D   S E V C GAC  AP +M+ +  +  L
Sbjct: 83  GTACHVKGGQSILSSVKKHLHLEEGETSEDFQFSLETVACLGACFVAPAMMVNRTYFGKL 142

Query: 161 TPERLEEIIDAFSTGQGD 178
           +P+++  +I  +   +GD
Sbjct: 143 SPDKVNNVIGQYEKTEGD 160


>gi|302393030|ref|YP_003828850.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
 gi|302205107|gb|ADL13785.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    + ++++ Y   +    +IP+L   QE+ G++ +  ++ ++  L ++  ++  + 
Sbjct: 13  EEYLAPLRDILAGYKMKK--KNLIPILQAIQEEYGYLPQQVLKELSENLGVSLSKIYGVT 70

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L+P G    ++VC  T C +RG EK++E  + ++         D   + E V 
Sbjct: 71  TFYSQFHLNPRGENV-IRVCMGTACHVRGGEKILEKIQEELGIDDGETTEDLKFTLESVA 129

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++MI  DT+  LTP+++ EI+  +
Sbjct: 130 CIGACGLAPVIMINDDTHGRLTPDQVPEILAEY 162


>gi|294506288|ref|YP_003570346.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
           M8]
 gi|294342616|emb|CBH23394.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
           M8]
          Length = 225

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 17  SFSEESAIWVNEVISR-------YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +FS++  +W +E  ++       YP    Q+A++ +L  AQE+ G+++   I++ A+ LD
Sbjct: 21  AFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLCADTLD 78

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           M + +   +ATFY Q+     GT   + VC    C + G   ++     K+         
Sbjct: 79  MTFTQAYGVATFYHQYFKEEKGTYV-LDVCTCFTCQVCGGYDVLHYLEEKLGVHAGETTD 137

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           DG  + +E EC G+C +APM+ I    Y  +LTP+++++++++   G+
Sbjct: 138 DGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGE 185


>gi|206901131|ref|YP_002250632.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
           H-6-12]
 gi|206740234|gb|ACI19292.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
           H-6-12]
          Length = 162

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             FSE +   V  ++ R+  S  + ++I +L   QE+ G++ + A+E+V+  L +    +
Sbjct: 5   LKFSEYAQKEVERILDRF--SSTKGSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEI 62

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+ F+L P G    +++C  T C ++G   L+     ++  K      DG  S 
Sbjct: 63  YGVVTFYSFFRLEPQGKHV-IRLCMGTACYVKGAADLL-TALEQMGLKEGKVTEDGYFSL 120

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + V C GAC  AP +MI ++ Y  LTP++L+++I+ F
Sbjct: 121 DLVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENF 157


>gi|296132261|ref|YP_003639508.1| NADH-quinone oxidoreductase, E subunit [Thermincola sp. JR]
 gi|296030839|gb|ADG81607.1| NADH-quinone oxidoreductase, E subunit [Thermincola potens JR]
          Length = 158

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++++Y   +   A+IP+L + Q+  G++ + A++ ++  L +    +  + TFY QF
Sbjct: 14  LEALLAKYKSQK--GALIPVLQQTQDIYGYLPKEALQQISRELKIPLSEIFGVCTFYAQF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            LSP G R  ++VC  T C +RG  K+ E  + ++  K      D   + E V C GAC 
Sbjct: 72  HLSPRG-RNIIRVCLGTACHVRGGAKIFERVQQELGIKDGETTEDLRFTIESVACIGACG 130

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++M+  DT+  LTP+++ +I+  +
Sbjct: 131 LAPVIMVNDDTHGRLTPDQIPDILAQY 157


>gi|218961475|ref|YP_001741250.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit gamma (hymA-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730132|emb|CAO81044.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit gamma (hymA-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 151

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFY 82
            + E+  +Y P +    +I +L   Q+Q+   ++S  A++ VA  LD+    +  + TFY
Sbjct: 1   MIKEICQKYAPRK--DNLIQILHEIQDQDPQHYISPEAVDTVAEYLDIPVNHIYGVLTFY 58

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T +   P G    +++C + PC ++G + ++   +  +         DG  + E   C G
Sbjct: 59  TMYSTKPRGKNI-IRLCESPPCYIKGSDNMLRKLKVLLGINIGETTKDGLFTLEFTSCLG 117

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170
            C NAP++MI  D Y DLT E++EEII+
Sbjct: 118 VCGNAPVMMINDDVYGDLTEEKVEEIIE 145


>gi|289522153|ref|ZP_06439007.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503989|gb|EFD25153.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 161

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  +IP+L   Q + G++   A+  ++  L M    +  +ATFY QF L P G R  ++V
Sbjct: 28  QGGLIPILQEVQREFGYLPEDALLTISRELKMPKAEIYGVATFYAQFHLKPRG-RHIIRV 86

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  +++E  +  +         D   + E V C GAC  AP++M+ +DT+ 
Sbjct: 87  CRGTACHVRGSLQILEKIKQTLGIDENETTEDLRFTLEPVACLGACGLAPVMMVDEDTHG 146

Query: 159 DLTPERLEEIIDAF 172
            +TP++++ I+D +
Sbjct: 147 RMTPDKIQSILDRY 160


>gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
           [Salinibacter ruber DSM 13855]
 gi|83757864|gb|ABC45977.1| NADH-ubiquinone oxidoreductase 24 kda subunit, putative
           [Salinibacter ruber DSM 13855]
          Length = 249

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 89/168 (52%), Gaps = 11/168 (6%)

Query: 17  SFSEESAIWVNEVISR-------YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +FS++  +W +E  ++       YP    Q+A++ +L  AQE+ G+++   I++ A+ LD
Sbjct: 45  AFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLCADTLD 102

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           M + +   +ATFY Q+     GT   + VC    C + G   ++     K+         
Sbjct: 103 MTFTQAYGVATFYHQYFKEEKGTYV-LDVCTCFTCQVCGGYDVLHYLEEKLGVHAGETTD 161

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           DG  + +E EC G+C +APM+ I    Y  +LTP+++++++++   G+
Sbjct: 162 DGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGE 209


>gi|15806513|ref|NP_295224.1| NADH dehydrogenase I subunit E [Deinococcus radiodurans R1]
 gi|6459263|gb|AAF11068.1|AE001994_4 NADH dehydrogenase I, E subunit [Deinococcus radiodurans R1]
          Length = 207

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%)

Query: 16  FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            S+  +    V E+ SRYP  P   +SA++PLL   Q+ EG+V+   +  +A +      
Sbjct: 1   MSYFADKTPLVAEIFSRYPDTPQGRRSALMPLLREVQDAEGFVAAPRLAEIAELCGTTAT 60

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY+ +   P G R H+QVC T  C L G + L +    ++  +P     DG  
Sbjct: 61  EVRSVMSFYSTYHTVPTG-RYHLQVCSTLMCALAGSDALWDELVTRLDVQPGEVTPDGRF 119

Query: 134 SWEEVECQGACVNAPMVMIGKDT-YEDLTP 162
           S ++VEC G+C  AP++ +  +  YE + P
Sbjct: 120 SVQKVECLGSCGTAPVLQLNDEGFYERVGP 149


>gi|119510368|ref|ZP_01629503.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
 gi|119465005|gb|EAW45907.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
          Length = 179

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 13  PSSFSFSEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           PS+    E+  +  ++  I RY     Q A+I +L +AQE  G++ +  +  +A+ L + 
Sbjct: 16  PSATDIHEDKRLKMLSATIKRYQYQ--QDALIEILHKAQELFGYLKKDVLVYIAHQLKLP 73

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY  F L+P+G R    VC  T C ++G E+++    N IH +P   ++DG
Sbjct: 74  PSTVYGVATFYHFFSLAPIG-RHSCMVCTGTACYVKGAEEILNSLENSIHIRPGETSADG 132

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +S     C G C  AP+V+       D TPE + + I  +
Sbjct: 133 QISLLTARCLGPCGIAPVVVFDDTVLGDQTPESVGDRIKGW 173


>gi|332971175|gb|EGK10139.1| NADH-quinone oxidoreductase subunit E [Psychrobacter sp.
           1501(2011)]
          Length = 170

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E I  YP +R  +A +  L   Q++ GWV  A +  +AN+LD+    +  +ATF+ + 
Sbjct: 26  IHEYIHHYPQAR--AASLDALKLVQKRNGWVDDAQVNAIANLLDVPVTDIEGVATFFNRI 83

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             SPVG R  + VC +  C L G E L    ++++  +     +DG  +   + C G C 
Sbjct: 84  YRSPVG-RHVILVCDSIACYLTGYEGLAAELKSQLGIEFGQTTTDGRFTLLPICCLGNCD 142

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P V+I +DT+  +TP+++ E+++ +
Sbjct: 143 KGPSVLIDEDTFGPVTPDQVAELLEYY 169


>gi|77919201|ref|YP_357016.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545284|gb|ABA88846.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 173

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 78/131 (59%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L +AQ   G++ +   E VA+ ++++  +V  + +FYT F + P G +  + VC  
Sbjct: 43  LVTVLHKAQSLFGYLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTMIPKG-KHPISVCMG 101

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G +K+++  +N++         DG  S + + C GAC  AP+V++G+  Y ++T
Sbjct: 102 TACFVKGADKVVDAFKNQLGVTVSEVTRDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 161

Query: 162 PERLEEIIDAF 172
           P+++++II  F
Sbjct: 162 PDQVKDIIADF 172


>gi|83590720|ref|YP_430729.1| NADH-quinone oxidoreductase, E subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573634|gb|ABC20186.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
          Length = 159

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + ++++RY   +   A+IP+L   QE  G++   A++ +A  +D+    V  + TFY QF
Sbjct: 15  IKQIVARYQEEK--GALIPVLQATQEALGYLPPEALKEIAAAMDLPLSTVYSVVTFYAQF 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  + VC  T C +RG  +++   +  +         D   + E V C GAC 
Sbjct: 73  HLQPRG-RHVIHVCQGTACHIRGGNRILNRIKELLQIDAGETTPDLRFTLEPVACLGACA 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++ I  DTY  L P+ +  I++ +
Sbjct: 132 LAPVMSISGDTYGHLKPDMIAGILEKY 158


>gi|225175971|ref|ZP_03729963.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168559|gb|EEG77361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 155

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+  +   E+ S+Y   R    +IP+L   Q   G++   A+  +A  + +   +V  +A
Sbjct: 2   EKEDMKFQEIFSQYNGER--EELIPILQDTQAIYGYLPEQAMRAIARFMRIPQSQVYGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TF+ QF  S  G  A ++VC  T C ++G  +L+E    ++         D + S E V 
Sbjct: 60  TFFGQFYFSRRGKHA-IKVCLGTACHVKGAGRLMEAFEREMGIGCGCITDDYSFSLERVN 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  AP+VM+G+D Y  +  +R++E++D ++
Sbjct: 119 CVGACAIAPVVMVGEDVYGHVESKRVKEVLDIYA 152


>gi|206602056|gb|EDZ38538.1| Putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           sp. Group II '5-way CG']
          Length = 168

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+ +L + QE+ G+V   A+E V  IL++   ++  + TFY+QF   P G +  ++V
Sbjct: 25  EGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRG-KFVLKV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   L++  + ++H +P     D   + E V C G+C  APM M+    Y 
Sbjct: 84  CVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVACLGSCALAPMAMVQGTAYG 143

Query: 159 DLTPERLEEIIDAF 172
            L+ +++  +I  F
Sbjct: 144 KLSADKMVSLIRQF 157


>gi|269218341|ref|ZP_06162195.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212200|gb|EEZ78540.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 223

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+++RYP +R  SA++P+L   Q  +G+VS   I + A++L +    V  +ATFY+Q++ 
Sbjct: 19  EIVARYPVAR--SALMPMLHLVQSVDGFVSPRGIALCADVLGLTRAEVSAVATFYSQYRR 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G   +V VC    C + G +++ E   + +         DG ++ E +EC   C  A
Sbjct: 77  HPNG-EYNVGVCTNALCAVMGGDEIWEALTSALGVGSDETTPDGKITLEALECNAGCDYA 135

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
           P+VM+  + +++ TP    +I++    G+   + P    D++ +
Sbjct: 136 PVVMVNWEFFDNQTPTSALQIVEDIRAGR--DLHPTRGADKVHT 177


>gi|257053165|ref|YP_003130998.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256691928|gb|ACV12265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 186

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V EV+   P ++    VIP L   QE+ G++ +  +E++A     +   V   A+FY+QF
Sbjct: 42  VREVLVDVPTAK--EGVIPALQDVQEEYGYLPKFTMELIAEHTGTSIAHVYGTASFYSQF 99

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            + P G    ++VC  T C ++G +++ E   +++         DG  + + V C GAC 
Sbjct: 100 HMEPRGDHT-IKVCTGTACHVKGADEVSEAFCDELDVDLQDVTDDGKFTVDHVRCIGACS 158

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            A  VM+G + Y D+ P+ ++++I+ +
Sbjct: 159 LAVAVMVGDEVYGDVQPDEVDQVIEEY 185


>gi|300782455|ref|YP_003762746.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
 gi|299791969|gb|ADJ42344.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
          Length = 285

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F  +      E+I+RYP SR  SA++P+L   Q  +G+VS+  I   A  LD++   V  
Sbjct: 49  FDADIHAKAQELIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCAKQLDLSDAEVSA 106

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKPLHRNSD----- 130
           +ATFYT ++  P G    V VC  T C   G + + +  +  +    +PL  N       
Sbjct: 107 VATFYTMYKRKPCGEHL-VSVCTNTLCAAMGGDAIYKRLQTHLGSEAEPLGHNETAGTPN 165

Query: 131 --GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             G+++ E  EC  AC  AP++ +  + +++ T E+   ++DA   G+    +P P
Sbjct: 166 EPGSITLEHAECLAACDLAPVIQVNYEYFDNQTEEKAVALVDALQAGK----KPAP 217


>gi|304413374|ref|ZP_07394847.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
           insecticola LSR1]
 gi|304284217|gb|EFL92610.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
           insecticola LSR1]
          Length = 172

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           PS F  S E    + +    Y  +R  +A I  L   Q++ GWV   AI  +A IL +  
Sbjct: 15  PSDFVLSAEEQAAIEQEKQHYEDAR--AATIEALKIVQKKRGWVPDGAIYAIAEILAIPA 72

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFY+Q    PVG R  ++ C +  C + G +++  V   K+  KP    +DG 
Sbjct: 73  SDVEGVATFYSQIFRRPVG-RHVIRYCDSVVCYITGYQEIQTVLEKKLSIKPGQTTTDGR 131

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +     C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 132 FTLLPTCCLGNCDKGPTMMIDEDTHSYLKPEDIEPLLERY 171


>gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E subunit [Deinococcus geothermalis
           DSM 11300]
 gi|94555301|gb|ABF45215.1| NADH dehydrogenase subunit E [Deinococcus geothermalis DSM 11300]
          Length = 203

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 4/150 (2%)

Query: 26  VNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           + ++ SRYP  P   +SA++PLL   Q+ EG+VS   +  +A +       V  + +FY+
Sbjct: 11  LADIFSRYPATPQGRRSALMPLLREVQDAEGFVSEVRMAEIAELCGTTATEVRSVMSFYS 70

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +   P G R H+QVC T  C L G ++L +   +++   P     DG  S ++VEC G+
Sbjct: 71  TYHTLPTG-RYHLQVCSTLMCALAGSDELWDYLVSELDVVPGEVTPDGRFSVQKVECLGS 129

Query: 144 CVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
           C  AP+V +  +  YE +T  + + ++ A 
Sbjct: 130 CGTAPVVQLNDEGYYERVTRTKCDRLLAAL 159


>gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha275]
 gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis 8013]
 gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M6190]
 gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           ES14902]
 gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           G2136]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|301060599|ref|ZP_07201434.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
 gi|300445302|gb|EFK09232.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
          Length = 158

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I +Y  S+ + A+IPLL   Q+  G+V   A+++VA  L +  + +  + TFYTQF L+
Sbjct: 11  LIEKY--SQKKGALIPLLQEIQDAYGYVPDDAVQLVAQELAIFPVEIYGVLTFYTQFYLT 68

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  ++VC  T C + G + L +    K+  +      DG  + E V C G C  AP
Sbjct: 69  PRG-KHTIRVCQGTACHVMGAKGLFDYLLEKLEVEEGETTKDGFFTVERVACLGCCGMAP 127

Query: 149 MVMIGKDTYEDLTPERLEE 167
           ++MI  D Y   T + +EE
Sbjct: 128 VIMIDDDFYGRCTIQNIEE 146


>gi|300087355|ref|YP_003757877.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527088|gb|ADJ25556.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 166

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           SR +SA+IPLL   Q++ G++   A+   A  L ++   V  +A+FYTQF+  P G R  
Sbjct: 20  SRDRSALIPLLQALQQEFGYLPPEALSAAAERLKLSESAVYGVASFYTQFRFQPSG-RHI 78

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           ++VC  T C + G EK+++  R  +  +P   ++DG  S E V C GAC  AP+V++ ++
Sbjct: 79  IKVCRGTACHVGGGEKILDELRRGLDVEPGGTSADGEYSLETVACVGACALAPVVLVNEE 138


>gi|304312243|ref|YP_003811841.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
 gi|301797976|emb|CBL46198.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
          Length = 180

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S+   S E A  +   +S+YP ++  S  I  L   Q   GWVS  +++ VA  L ++  
Sbjct: 20  SADGLSPEEAAEILAGLSQYPDNQAMS--IEALKIVQHHRGWVSNESLKAVAAFLRLSPE 77

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY       VGT   V+VC +  C + GCE L+   +NK+        +DG  
Sbjct: 78  EVEGVATFYNLVYRQRVGTHV-VRVCDSVSCWIMGCEALVGELQNKLQLTLGETTADGRF 136

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C GAC +AP+VM+G D + D+  E ++ ++  +
Sbjct: 137 TLLPGPCMGACDHAPVVMVGDDYHFDVKAEAIDALLKPY 175


>gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           N1568]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
 gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
 gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|254805713|ref|YP_003083934.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
 gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
          Length = 157

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++  AI  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|302879337|ref|YP_003847901.1| NADH-quinone oxidoreductase, E subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582126|gb|ADL56137.1| NADH-quinone oxidoreductase, E subunit [Gallionella
           capsiferriformans ES-2]
          Length = 159

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +N  + +YP  + QSAV+  L   Q+++GW++   +  +A  L M  + V E+ATFY  +
Sbjct: 10  INRELKKYPVDQKQSAVMSALRFVQDEKGWIATEDMADIAAFLGMPQMAVYEVATFYHMY 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P+G +  + VC    C L G    +    +K+        +DG     E EC GAC 
Sbjct: 70  NLKPMG-KTTLTVCTNLSCTLCGSADTVAYLTSKLGIGFGEVTADGKYGMREGECMGACK 128

Query: 146 NAPMVMI-GKDTYEDLTPERLEEII 169
           +AP++ I  K     LTP ++++I+
Sbjct: 129 DAPLMTINNKKLCGRLTPAKIDQIL 153


>gi|257054396|ref|YP_003132228.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
 gi|256584268|gb|ACU95401.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
          Length = 253

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P +  F  E      ++ +RYP +R  SA++P+L   Q  +G+VS+  I   A  LD+ 
Sbjct: 11  KPETDPFGPEIEEQAQQLAARYPQAR--SALLPMLHLVQSVQGYVSQEGIAFCARQLDLT 68

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPL-HRN 128
              V  +ATFYT ++  P G    V VC  T C   G +++ +     + +  KPL H  
Sbjct: 69  EAEVSAVATFYTMYKRKPCGEHL-VSVCTNTLCAALGGDEIYKRLSEHLGEDGKPLGHEE 127

Query: 129 S------DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +       G+++ E  EC  AC   P++ +  + +++ TPE+  E++DA   G+
Sbjct: 128 TVGEPGEPGSITLEHAECLAACDFGPVLQVNYEYFDNQTPEKAVELVDALRRGE 181


>gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
 gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
          Length = 157

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|124515812|gb|EAY57321.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           rubarum]
          Length = 168

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+ +L + QE+ G+V   A+E V  IL++   ++  + TFY+QF   P G +  +++
Sbjct: 25  EGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRG-KFVLKI 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   L++  + ++H +P     D   + E V C G+C  APM M+    Y 
Sbjct: 84  CVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVACLGSCALAPMAMVQGTAYG 143

Query: 159 DLTPERLEEIIDAF 172
            L+ +++  +I  F
Sbjct: 144 KLSADKMVSLIRQF 157


>gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
 gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
          Length = 157

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|239816479|ref|YP_002945389.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
 gi|239803056|gb|ACS20123.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
          Length = 182

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP +  QSAV+  L   Q+ EG++S      +A  L MA I V E+ TFY  +   P
Sbjct: 31  VAKYPEAGKQSAVMACLAIVQQDEGFISMQREREIAEYLGMAPIAVHEVTTFYNMYNQHP 90

Query: 90  VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           VG +  + VC   PC LR G   L+ +   K+  K     +DG  + ++ EC GAC ++P
Sbjct: 91  VG-KFKLNVCTNLPCQLRDGVTALVHL-EKKLGIKMGETTADGMFTLQQSECLGACADSP 148

Query: 149 MVMIGKDTY-EDLTPERLEEIIDAF 172
           ++++   T    ++ E+L+++ID  
Sbjct: 149 VMLVNDRTMCSFMSNEKLDQLIDGL 173


>gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
 gi|4980495|gb|AAD35106.1|AE001689_12 NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
          Length = 176

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+I +L +AQE  G++    +E +++ LD+   +V  + TFY  F   P G +  ++V
Sbjct: 39  KDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKG-KHQIKV 97

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-Y 157
           C  T C ++G +++ E    ++   P    SDG  S   V C GAC  AP+VM+ +D  Y
Sbjct: 98  CLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFY 157

Query: 158 EDLTPERLEEIIDAF 172
             +TP+ + +II  +
Sbjct: 158 GRVTPDMVPQIISKY 172


>gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 157

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
 gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
          Length = 157

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I chain E [Neisseria lactamica ST-640]
 gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06]
          Length = 157

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|312793477|ref|YP_004026400.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876008|ref|ZP_07735997.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797206|gb|EFR13546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180617|gb|ADQ40787.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 160

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E+I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILSRY 160


>gi|148270045|ref|YP_001244505.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170288729|ref|YP_001738967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|281412074|ref|YP_003346153.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
 gi|147735589|gb|ABQ46929.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170176232|gb|ACB09284.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|281373177|gb|ADA66739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
          Length = 162

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+I +L +AQE  G++    +E +++ LD+   +V  + TFY  F   P G +  ++V
Sbjct: 25  KDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKG-KHQIKV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-Y 157
           C  T C ++G +++ E    ++   P    SDG  S   V C GAC  AP+VM+ +D  Y
Sbjct: 84  CLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFY 143

Query: 158 EDLTPERLEEIIDAF 172
             +TP+ + +II  +
Sbjct: 144 GRVTPDMVPQIISKY 158


>gi|301060220|ref|ZP_07201087.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445732|gb|EFK09630.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 195

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+  ++S  A+++VA+ L++A   V  +ATFY QF+  P G + H++VC  
Sbjct: 48  LIPMLQMIQERHAYLSADALQMVADKLELALCEVYGVATFYNQFRFHPPG-KHHMKVCLG 106

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG + ++E    K+         D   S E V C G C  AP+V++ +  +  + 
Sbjct: 107 TACHVRGGDIILENFERKLGIGHGETTPDREFSIERVACVGCCALAPVVIVDETAHGHVA 166

Query: 162 PERLEEIIDAFST 174
           P ++E +I  F  
Sbjct: 167 PSKVEGLILGFQV 179


>gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 157

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|238023163|ref|ZP_04603589.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
 gi|237865546|gb|EEP66686.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
          Length = 157

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++G+++   IE VA  + +A +   E
Sbjct: 2   LSAQSLKEIDIELAKYPADQRRSAIMSALRIAQVEKGYLAPETIEFVAKYIGIAPVAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        +DG  +  E
Sbjct: 62  VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIDYGETTADGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           OX99.30304]
          Length = 157

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491]
 gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491]
 gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M0579]
 gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240149]
 gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 157

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGISYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 634

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+PLL    E++ ++S + +  ++ +  ++   +L I TFY  F   P G  + V+V
Sbjct: 34  EQAVLPLLHYYMEKKNYISESDVSKISQLTGLSVSDILGIGTFYQHFVFHPTGKNS-VRV 92

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C TTPC+ RG +K  E     +         DG  +    +C G C  AP   I  D Y 
Sbjct: 93  CLTTPCLFRGGKKTFETLSKTLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 152

Query: 159 DLTPERLEEIIDAFSTGQ 176
             +PE +  I++ +  G+
Sbjct: 153 GTSPEEIPSILEEYRKGK 170


>gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330]
          Length = 157

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SAV+  L  AQ ++G+++   IE VA  + +  I   E
Sbjct: 2   LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        +DG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIGYGETTADGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|188585337|ref|YP_001916882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350024|gb|ACB84294.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 186

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
            +IPLL   QE+EG++SR  +E +A  ++++  +++ + +FY+QF + P G    ++VC 
Sbjct: 42  GLIPLLQTVQEREGYLSRKRLESIAREMNLSLAKIMGVVSFYSQFHIQPKGKNI-IRVCM 100

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G  +++E  + ++  +      D   S E V C GAC  AP++ I  +T+  +
Sbjct: 101 GTACHVKGAGQVMEKFQRELSIETGQTTEDREFSLEAVSCIGACGLAPVLTINHNTHGKV 160

Query: 161 TPERLEEIIDAF 172
           T   +  +I+ +
Sbjct: 161 TTSDVNHLINRY 172


>gi|307297598|ref|ZP_07577404.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916858|gb|EFN47240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 164

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
            +I +L +AQE  G++S    + V+  LD+   +V  + TFY  F + P G +  ++VC 
Sbjct: 29  VLINVLHKAQEIFGYLSEELQQHVSEKLDIPLSQVYGVVTFYNFFSMKPKG-KNQIKVCL 87

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED- 159
            T C ++G +K++E  +++++ +     SDG  S   V C GAC  AP+V+IG+D Y   
Sbjct: 88  GTACYVKGADKILERLQDELNVEMNEPTSDGLFSIHAVRCLGACSMAPVVLIGEDDYYGR 147

Query: 160 LTPERLEEIIDAF 172
           ++P+ + +I+D +
Sbjct: 148 VSPDEVSKILDKY 160


>gi|22125528|ref|NP_668951.1| NADH dehydrogenase subunit E [Yersinia pestis KIM 10]
 gi|45442152|ref|NP_993691.1| NADH dehydrogenase subunit E [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808039|ref|YP_651955.1| NADH dehydrogenase subunit E [Yersinia pestis Antiqua]
 gi|108812309|ref|YP_648076.1| NADH dehydrogenase subunit E [Yersinia pestis Nepal516]
 gi|145599242|ref|YP_001163318.1| NADH dehydrogenase subunit E [Yersinia pestis Pestoides F]
 gi|229838094|ref|ZP_04458253.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895293|ref|ZP_04510467.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
           A]
 gi|229898654|ref|ZP_04513799.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902653|ref|ZP_04517770.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
 gi|270490165|ref|ZP_06207239.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
 gi|294504366|ref|YP_003568428.1| ATP synthase subunit E [Yersinia pestis Z176003]
 gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [Yersinia pestis KIM 10]
 gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775957|gb|ABG18476.1| NADH dehydrogenase I chain E [Yersinia pestis Nepal516]
 gi|108779952|gb|ABG14010.1| NADH dehydrogenase I chain E [Yersinia pestis Antiqua]
 gi|145210938|gb|ABP40345.1| NADH dehydrogenase I chain E [Yersinia pestis Pestoides F]
 gi|229680100|gb|EEO76199.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
 gi|229688202|gb|EEO80273.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694460|gb|EEO84507.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701779|gb|EEO89804.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
           A]
 gi|262362645|gb|ACY59366.1| ATP synthase subunit E [Yersinia pestis D106004]
 gi|262366274|gb|ACY62831.1| ATP synthase subunit E [Yersinia pestis D182038]
 gi|270338669|gb|EFA49446.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
 gi|294354825|gb|ADE65166.1| ATP synthase subunit E [Yersinia pestis Z176003]
 gi|320014610|gb|ADV98181.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 187

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186


>gi|189426183|ref|YP_001953360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189422442|gb|ACD96840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 171

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           EVI +Y        ++P+L   Q+  G+V R  ++ VA  L++   ++  + TFY QF L
Sbjct: 25  EVIQKY--KDIPGNLMPVLQGIQDAYGYVPRITVDYVAERLNVYPSQIYGVLTFYAQFHL 82

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G +  ++VC  T C + G E++ E   ++I         D   ++E V C GAC  A
Sbjct: 83  KPRG-KFIIRVCMGTACHVLGAERIKESFYDRIGIGHAETTPDRRFTFELVACLGACGMA 141

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFST 174
           P+ M+  +TY  +T ++++EII  +S+
Sbjct: 142 PLAMVNDETYGKMTVQKVDEIIKEYSS 168


>gi|77919235|ref|YP_357050.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545318|gb|ABA88880.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 172

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L +AQ   G++ +   E VA+ +D +  +V  + +FYT F + P G +  + VC  
Sbjct: 42  LVTVLHKAQSLFGYLPKEVQEFVADQMDESLAKVYGVVSFYTFFTMIPKG-KHPISVCMG 100

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G +K+++  + ++         DG  S + + C GAC  AP+V++G+  Y ++T
Sbjct: 101 TACFVKGADKVVDALKQQLGVTVSEVTKDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 160

Query: 162 PERLEEIIDAFS 173
           P+++++I+  F+
Sbjct: 161 PDQVKDILADFA 172


>gi|319794664|ref|YP_004156304.1| NADH-quinone oxidoreductase, e subunit [Variovorax paradoxus EPS]
 gi|315597127|gb|ADU38193.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus EPS]
          Length = 180

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP +  QSAV+  L   Q+ EG++S      +A+ L MA I V E+ TFY  +   P
Sbjct: 29  VAKYPEAGKQSAVMACLAIVQQDEGYISMQREREIADYLGMAPIAVHEVTTFYNMYNQHP 88

Query: 90  VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           VG +  + VC   PC LR G   L+ +   K+  K      DG  + ++ EC GAC ++P
Sbjct: 89  VG-KFKLNVCTNLPCQLRDGVTALVHL-EKKLGIKMGETTGDGLFTLQQSECLGACADSP 146

Query: 149 MVMIGKDTY-EDLTPERLEEIIDAF-STGQGDT 179
           ++++   T    ++ E+L+++I+   ++ +G+T
Sbjct: 147 VMLVNDRTMCSFMSNEKLDQLIEGLRASTKGET 179


>gi|302391755|ref|YP_003827575.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
           dehydrogenase diaphorase component iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302203832|gb|ADL12510.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
           dehydrogenase diaphorase component iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L  AQ++ G++ +  +  ++  LD+ +  V  +ATFY+QF L P G    ++VC  
Sbjct: 33  LIPVLQAAQQEYGYLPQPVLREISKELDIFFSEVYGVATFYSQFHLEPRGENI-IRVCMG 91

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG +++++  + ++         D   + E V C GAC  AP++ +  DT+  L 
Sbjct: 92  TACHVRGGDEILDKVKAELGIDAGETTDDQKFTLESVACIGACGLAPVMTVNDDTHGLLV 151

Query: 162 PERLEEIIDAF 172
           P+++ +I+D +
Sbjct: 152 PDKIPDILDQY 162


>gi|51596903|ref|YP_071094.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis IP 32953]
 gi|170023804|ref|YP_001720309.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis YPIII]
 gi|186895984|ref|YP_001873096.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis PB1/+]
 gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [Yersinia pseudotuberculosis IP 32953]
 gi|169750338|gb|ACA67856.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699010|gb|ACC89639.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 187

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AEPAAMPDAFELSTEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186


>gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis WUE 2594]
          Length = 157

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K          DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKFGISYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18]
 gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18]
 gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710]
          Length = 157

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58]
 gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58]
 gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           H44/76]
 gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           CU385]
 gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           H44/76]
          Length = 157

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|189499446|ref|YP_001958916.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189494887|gb|ACE03435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 195

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 4/146 (2%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           SA +PLL   Q + G++ R A++++    D+   ++  +ATFY+QF+L PVG R  ++VC
Sbjct: 27  SAAVPLLQAVQNEYGYLPREAMDIIVAETDVGASQLYGVATFYSQFRLDPVG-RHVIKVC 85

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             T C + G +++    R  +  K    +  S+G+ + E+V C G C  AP+++IG +T+
Sbjct: 86  HGTACHVSGADRINTALRQSLGIKNEDEDTASNGSYTVEDVACIGCCSLAPVMVIGDETF 145

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPG 183
            +L     +  +   +  QG+ + PG
Sbjct: 146 GNLKGTDAQRSLKKHARQQGEFL-PG 170


>gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M13399]
 gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M04-240196]
          Length = 157

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
 gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
          Length = 157

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|312127643|ref|YP_003992517.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777662|gb|ADQ07148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 160

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
              C GAC  AP+V+I    Y  L+ + +E+I+
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDIL 157


>gi|322419372|ref|YP_004198595.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320125759|gb|ADW13319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 173

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++  L +AQ   G++     + VA+++  +  +V  + +FYT F + P G +  + VC  
Sbjct: 43  LVTALHKAQSLYGYLPMEVQQQVASLMGTSLSQVYGVVSFYTYFTMVPKG-KYPISVCNG 101

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EK+I+  + ++  +      DG  S + + C GAC  AP+VM+G+ T+  +T
Sbjct: 102 TACFVRGSEKVIDAFKKQLCIEVGEVTRDGLFSIDVLRCVGACALAPVVMVGEKTFGGVT 161

Query: 162 PERLEEIIDAF 172
           P+++++II  F
Sbjct: 162 PDQVKDIIAEF 172


>gi|284992921|ref|YP_003411475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
           obscurus DSM 43160]
 gi|284066166|gb|ADB77104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
           obscurus DSM 43160]
          Length = 341

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E+  +   E+I+RYP  R  SA++P+L   Q  +G+V+   + + A  L +    V  
Sbjct: 31  LTEQVRLEAREIIARYPQPR--SALLPMLHLVQSHQGYVTPEGVALCAEELGLTKAEVGA 88

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  P G R  V VC  T C + G +++ +     +        +DG+++ E 
Sbjct: 89  VATFYTMYKRRPTG-RHLVSVCTNTLCAVLGGQRIFDALSRDLGVHHDETAADGSVTLEH 147

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            EC  AC  AP+V +  + Y+    +   E++ A   G+
Sbjct: 148 AECLAACDYAPVVTVDYEFYDQQDVDSARELVAALRRGE 186


>gi|147678347|ref|YP_001212562.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274444|dbj|BAF60193.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 162

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           + +I +L RAQE  G++ R A+ ++A  L ++   V  + TFY  F L P G R  + VC
Sbjct: 29  TGLIQVLTRAQELIGYLPRWALIMIAEGLGLSLQEVYGVVTFYAFFSLIPRG-RHKISVC 87

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-MVMIGKDTYE 158
             T C ++G + +++  R  I  KP     D   + E V C GAC  AP M++ GKD + 
Sbjct: 88  AGTACYVKGTKMVLKTLREAIGIKPGQTTPDSRFTLEIVRCIGACGLAPAMIIDGKDVHG 147

Query: 159 DLTPERLEEIIDAFS 173
            L PE++  I++ ++
Sbjct: 148 RLEPEQIPAILEQYA 162


>gi|77917823|ref|YP_355638.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
 gi|77543906|gb|ABA87468.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 162

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           V+ +L   Q+  GWVS   +E+ A IL ++ ++V EIATFY +    PVG R  + VC +
Sbjct: 27  VLDVLHAIQDANGWVSDEGVELAAIILGLSPLQVEEIATFYDKIYRCPVG-RKVIHVCDS 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C  RG E L+   +  +   P    +DG  +     C GAC  AP V IGK  Y  + 
Sbjct: 86  ICCWSRGGEALMLRLQQLLGIAPGETTADGMFTLLPTCCLGACGEAPAVRIGKTLYGQVA 145

Query: 162 PERLEEIIDAFST 174
            E+LE I+D+  T
Sbjct: 146 LEQLESILDSERT 158


>gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240355]
          Length = 157

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     +  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGVNAADYLKQKLGIGFGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|149365542|ref|ZP_01887577.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
 gi|218929638|ref|YP_002347513.1| NADH dehydrogenase subunit E [Yersinia pestis CO92]
 gi|115348249|emb|CAL21177.1| NADH dehydrogenase I chain E [Yersinia pestis CO92]
 gi|149291955|gb|EDM42029.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
          Length = 172

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 9   AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 66

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 67  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 125

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 171


>gi|149927545|ref|ZP_01915799.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
 gi|149823818|gb|EDM83044.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
          Length = 159

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE +   +++ +++YP  +  SAV+  L  AQ + GW+   AIE VA  L++  I  
Sbjct: 1   MKLSENAYRLIDKELTKYPADQKISAVMAALRIAQVELGWLPSEAIEAVAEYLEIQPIAA 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  +    VG ++ + VC   PC L G     E  + K+         DG  + 
Sbjct: 61  YEVATFYNMYDTKKVG-KSKIVVCTNLPCALSGGTDAAEYLKKKLGIDYNETTKDGLFTL 119

Query: 136 EEVECQGACVNAPMVMI 152
           +E EC GAC ++P++++
Sbjct: 120 KEGECMGACGDSPVMLV 136


>gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
 gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
          Length = 157

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|77918445|ref|YP_356260.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77544528|gb|ABA88090.1| formate dehydrogenase gamma subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 163

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A+IP+L  AQ+  G++    +E ++  L + +  V  + TFY+QF L P G R  ++VC
Sbjct: 31  GALIPVLQGAQDIYGYLPGEVLETISKELKIPFSEVFGVVTFYSQFHLKPRG-RNIIRVC 89

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG  K+ E  +  +         D   + E V C GAC  AP++MI  DT+  
Sbjct: 90  LGTACHVRGGSKIFEGLKEILGVDNGGTTEDLRFTLESVACIGACGLAPVIMINDDTHGR 149

Query: 160 LTPERLEEIIDAF 172
           LT + L++I++ +
Sbjct: 150 LTNDGLDKILEQY 162


>gi|317492620|ref|ZP_07951047.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919370|gb|EFV40702.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 166

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS + LA+EE     F  S+ +   +      Y   R  +A I  L   Q++ GWV   A
Sbjct: 1   MSDQSLAKEEV----FVLSDSAREAIEHEKHHYEDPR--AASIEALKIVQKEHGWVPDGA 54

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A +LD+    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+
Sbjct: 55  IYAIAEVLDIPAADVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHINGYQGIQAALERKL 113

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + KP     DG  +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 114 NIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPENVVELLEQY 165


>gi|225016112|ref|ZP_03705345.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
           DSM 5476]
 gi|224951109|gb|EEG32318.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  +EE A  +  VI +Y       A +P+L  AQE  G++      ++A  L +    +
Sbjct: 10  FKGTEEQAQRLQAVIEKY--KDVPGANMPVLQEAQEIYGYLPIEVQSMIAEGLGVPIETL 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             I TFY+QF LSP G + ++ VC  T C ++G   L++    ++  +P    SDG  S 
Sbjct: 68  YGITTFYSQFSLSPKG-KYNISVCMGTACYVKGSGALLDRITKRLGIQPEETTSDGRFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C GAC  AP++ I  + Y  LT + ++ I+D +
Sbjct: 127 TACRCIGACGLAPVLTINDEVYGRLTVDDIDGILDKY 163


>gi|325003720|ref|ZP_08124832.1| NADH dehydrogenase subunit E [Pseudonocardia sp. P1]
          Length = 276

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A  E  P S +F E +     E I++YP  R  SA++PLL   Q  EG+VS+  I   A 
Sbjct: 25  APPEPSPVSPTFDELTRARTKETIAQYPEPR--SALLPLLHLVQSVEGYVSQDGIRYCAE 82

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI--HQKP 124
            L++    V  +ATFYT ++ SP G    V VC  T C   G + +    +  +    +P
Sbjct: 83  ALELTTAEVSAVATFYTMYKRSPCGEHL-VSVCTNTLCAALGGDDIYARLQTHLGSEDRP 141

Query: 125 LHR-------NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           L          + G+++ E  EC  AC  AP++ +  + +++ + E   E++DA   G+ 
Sbjct: 142 LGHEETVGEPGTTGSITLEHAECLAACDLAPVLQVDYEYFDNQSVESAVELVDALRRGE- 200

Query: 178 DTIRPGP 184
              RP P
Sbjct: 201 ---RPQP 204


>gi|312135111|ref|YP_004002449.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor owensensis OL]
 gi|311775162|gb|ADQ04649.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 160

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160


>gi|206901697|ref|YP_002250292.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740800|gb|ACI19858.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 161

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L+  Q++  ++    I  +   LD++  ++  +ATFY QF L P G +  + VC  
Sbjct: 24  LIKILLDVQKEYRYLPEDVINYIGVALDISPAKIYGVATFYAQFSLKPKG-KYTILVCDG 82

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G   LI   + +++  P     D   S ++V C GAC  AP+++I ++ Y +LT
Sbjct: 83  TACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCLGACALAPVMVINEEVYGNLT 142

Query: 162 PERLEEII 169
           PE+++EI+
Sbjct: 143 PEKVKEIL 150


>gi|258516626|ref|YP_003192848.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780331|gb|ACV64225.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 163

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP+L  AQ+  G++ +  ++ ++  L + + ++  ++TFY QF L P G R  V+V
Sbjct: 30  KGAIIPVLQGAQDIYGYLPKEVMQQISKDLRVPFSKIYGVSTFYAQFHLKPRG-RNIVRV 88

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K+ E     +         D   + E V C GAC  AP++MI  DT+ 
Sbjct: 89  CQGTACHVRGGKKIFEAVEKVLGISEGGTTEDLRFTLETVACLGACGLAPVLMINDDTHG 148

Query: 159 DLTPERLEEIIDAF 172
            L P  ++ I++ +
Sbjct: 149 RLVPGDIQGILEQY 162


>gi|217967305|ref|YP_002352811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336404|gb|ACK42197.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 162

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 4/157 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             FS+ +   + +++ ++  S  + ++I +L   QE+ G++ + A+E+V+  L +    +
Sbjct: 5   LKFSDYAQRELEKILDQF--SSTKGSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEI 62

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+ F+L P G    +++C  T C ++G   L+     +I  K      DG  S 
Sbjct: 63  YGVVTFYSFFRLEPQGKHV-IRLCMGTACYVKGAADLL-TALEQIGLKEGKVTEDGYFSL 120

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + V C GAC  AP +MI ++ Y  LTP++L+++I+ F
Sbjct: 121 DLVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENF 157


>gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
 gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
          Length = 157

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  + +YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELVKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
 gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
          Length = 157

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|302871904|ref|YP_003840540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574763|gb|ADL42554.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 160

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFRKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160


>gi|222529286|ref|YP_002573168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312622468|ref|YP_004024081.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222456133|gb|ACM60395.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312202935|gb|ADQ46262.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 160

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +    R   A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEKNKSRR--GALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGDH-KISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +++I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVKDILSRY 160


>gi|295798104|emb|CAX68923.1| NADH-quinone oxidoreductase 24 kD subunit E [uncultured bacterium]
          Length = 161

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + + + YP  R  + ++P+L   QEQ  ++     E VA    +    V E+ TFYT F 
Sbjct: 17  DSICANYPVKR--AGLLPVLRLIQEQYSFIPPHVEEQVAQYFQIPPADVREVMTFYTLFH 74

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P   +  + VC T  C L G ++++     K+  KP    +DG  + +EVEC GAC  
Sbjct: 75  SKP-RAKCEINVCRTLSCSLMGAKEMVAYISEKLGIKPGETTADGRFTLKEVECLGACEI 133

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172
           APM  +G +    LT E+++ II  +
Sbjct: 134 APMAQVGHEYVGPLTREKIDHIIQQY 159


>gi|160935013|ref|ZP_02082399.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
 gi|156866466|gb|EDO59838.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
          Length = 164

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FS ++E    + E+I ++       A++P+L  AQ   G++     ++VA+ L +    V
Sbjct: 10  FSGTKEQEAQLFEIIEKHKNE--PGAIMPVLQEAQNVYGYLPIEVQQMVADGLGVPLSEV 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L+P G + ++ VC  T C ++G  K++E    ++  +      DG  S 
Sbjct: 68  FGVATFYSQFSLTPKG-KYNISVCLGTACYVKGSGKILEELSKELGIEAEECTEDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C GAC  AP++ I  D Y  L PE ++ I+  +
Sbjct: 127 TACRCIGACGLAPVITINDDVYGRLVPEDVKGILAKY 163


>gi|148653493|ref|YP_001280586.1| NADH dehydrogenase subunit E [Psychrobacter sp. PRwf-1]
 gi|148572577|gb|ABQ94636.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter sp. PRwf-1]
          Length = 170

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E I  YP +R  +A +  L   Q++ GWV+ A +  +AN+LD+    +  +ATF+ + 
Sbjct: 26  IHEYIHHYPHAR--AASLDALKLVQKRNGWVNDAQVNAIANLLDVPVTDIEGVATFFNRI 83

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             SPVG R  + VC +  C L G E+L    +  +  +     +DG  +   + C G C 
Sbjct: 84  YRSPVG-RHVILVCDSIACYLTGYEELAAELKTTLGIEFGQTTADGRFTLLPICCLGNCD 142

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P V+I +DT+  ++P  + E+++ +
Sbjct: 143 KGPSVLIDEDTFGPVSPSEVAELLEYY 169


>gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 157

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E+ATFY  + L P
Sbjct: 14  LAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYEVATFYNMYDLEP 73

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG +  + VC   PC LRG     E  + K+         DG  +  E EC GAC +AP+
Sbjct: 74  VG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVESECMGACGDAPV 132

Query: 150 VMI 152
           +++
Sbjct: 133 MLV 135


>gi|158319327|ref|YP_001511834.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158139526|gb|ABW17838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 170

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++S+Y   +   ++I +L   QE   ++   A+  ++    +   ++  +ATFYTQF
Sbjct: 23  LKSILSKYEGKK--GSLISILQDVQEYYNYLPMDALNYISVETGIKPAKIHGVATFYTQF 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L PVG +  + +C  T C + G + + E  + ++H +      D   +   V C G C 
Sbjct: 81  RLKPVGEKL-IMLCQGTACHVNGSKAVEEAIKEELHIQDGETTEDNLFTLINVACLGCCS 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +P++MI  DTY +LTPE+++ II    + Q
Sbjct: 140 LSPVMMINDDTYGNLTPEKVKSIIREIKSAQ 170


>gi|217966956|ref|YP_002352462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336055|gb|ACK41848.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 161

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +L+  Q++  ++    I  +   LD+   ++  +ATFY QF L P G +  + V
Sbjct: 21  KDNLIKILLDIQKEYRYIPEDVINYIGVALDIPPAKIYGVATFYAQFSLKPKG-KYTILV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G   LI   + +++  P     D   S ++V C GAC  AP+++I ++ Y 
Sbjct: 80  CDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVGCLGACALAPVMVINEEVYG 139

Query: 159 DLTPERLEEII 169
           +LTPE+++EI+
Sbjct: 140 NLTPEKVKEIL 150


>gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
 gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
          Length = 157

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  +++YP  + +SA++  L  AQ + G+++   IE VA  + +  I   E+ATFY  +
Sbjct: 10  IDTELAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYEVATFYNMY 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L PVG +  + VC   PC LRG     E  + K+        +DG  +  E EC GAC 
Sbjct: 70  DLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIDYGETTADGKFTLVEGECMGACG 128

Query: 146 NAPMVMIGKDT 156
           +AP++++   T
Sbjct: 129 DAPVMLLNNHT 139


>gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090]
 gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|239999840|ref|ZP_04719764.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18]
 gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140]
 gi|240081586|ref|ZP_04726129.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|240113868|ref|ZP_04728358.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae MS11]
 gi|240116599|ref|ZP_04730661.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID18]
 gi|240118823|ref|ZP_04732885.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID1]
 gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1]
 gi|240124362|ref|ZP_04737318.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID332]
 gi|240126574|ref|ZP_04739460.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-92-679]
 gi|240129039|ref|ZP_04741700.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-93-1035]
 gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|260439640|ref|ZP_05793456.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
 gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA
           1090]
 gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
          Length = 157

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|288574745|ref|ZP_06393102.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570486|gb|EFC92043.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 156

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 27  NEVISRY-----PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
            EVI+R      P       +IP+L   Q + G++   A++ V+  L +    +  +ATF
Sbjct: 6   TEVIARTSEIVSPWKSKHGGLIPILQSIQGEFGYLPTEALKTVSKDLKIPEAEIYGVATF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L+P G R  V+VC  T C +RG +K++++ +            D   + E V C 
Sbjct: 66  YAQFHLNPRG-RHVVRVCRGTACHVRGSQKILDMVKEITGINENETTKDLRFTIEPVACL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP++M+   T+  L P ++ EI++ F
Sbjct: 125 GACGLAPVMMVDDQTFGRLEPSKVREILEKF 155


>gi|207723877|ref|YP_002254275.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
 gi|207742739|ref|YP_002259131.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
           IPO1609]
 gi|206589082|emb|CAQ36044.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
 gi|206594133|emb|CAQ61060.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
           IPO1609]
          Length = 141

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 4/126 (3%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L  AQ ++GWVS   ++ VA  L+M  + V E+ATFY  +   PVG R  + VC   PC 
Sbjct: 4   LAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLSVCTNLPCA 62

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY--EDLTPE 163
           L G E+  +  + K+        +DG  + +E EC GAC +AP VMI  +T+    ++ E
Sbjct: 63  LSGGERAADYLKQKLGIGFNETTADGNFTLKEGECMGACGDAP-VMIVNNTHMCSFMSNE 121

Query: 164 RLEEII 169
           +L+ +I
Sbjct: 122 KLDALI 127


>gi|325972138|ref|YP_004248329.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
 gi|324027376|gb|ADY14135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
          Length = 157

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 14/165 (8%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           E  F P+  SF +E   W      +  P      +I +L + Q+++G++SR A ++VA  
Sbjct: 6   EFTFSPALVSFIKE---W------KTKPGN----LIMVLHKVQQEQGYISREAADLVAAQ 52

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           LD+    +  + +FY  F+L+  G + ++QVC  T C L+G + LI+    ++H      
Sbjct: 53  LDVPLATIWGVVSFYHFFKLTKPG-KHNIQVCLGTACYLKGAQPLIDEIDKQLHLPVGAV 111

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             DG  S + V C G C  AP++ +G + +  +T +++  II  F
Sbjct: 112 TEDGNFSLDAVRCVGCCGLAPVMTVGGEVFGKVTKDQISGIIAKF 156


>gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442]
 gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442]
          Length = 157

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGEITPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLV 135


>gi|325290780|ref|YP_004266961.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
 gi|324966181|gb|ADY56960.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
          Length = 161

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQE  G +S   + V++  L++    V  +ATFY+QF+ +P+G R  ++VC  
Sbjct: 31  LITVLQKAQEIYGHLSEEIMRVISEKLEIPAAEVFGVATFYSQFRFTPMG-RNVIRVCMG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG   ++      +  K      DG  + E V C GAC  AP++ I    Y ++T
Sbjct: 90  TACHVRGALNVLRTIERGLGIKAGETTQDGRFTLETVACIGACGLAPVISINNMVYGNMT 149

Query: 162 PERLEEIIDAF 172
           P+ + + +D +
Sbjct: 150 PQAVMQTLDKY 160


>gi|15802832|ref|NP_288859.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 EDL933]
 gi|15832423|ref|NP_311196.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. Sakai]
 gi|168748134|ref|ZP_02773156.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755037|ref|ZP_02780044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761276|ref|ZP_02786283.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767911|ref|ZP_02792918.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772989|ref|ZP_02797996.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780140|ref|ZP_02805147.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787192|ref|ZP_02812199.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798455|ref|ZP_02823462.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC508]
 gi|195935662|ref|ZP_03081044.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. EC4024]
 gi|208807945|ref|ZP_03250282.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208812470|ref|ZP_03253799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821285|ref|ZP_03261605.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209399385|ref|YP_002271694.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|217327662|ref|ZP_03443745.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|254794177|ref|YP_003079014.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223261|ref|ZP_05937542.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259189|ref|ZP_05951722.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283526|ref|YP_003500344.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. EDL933]
 gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. Sakai]
 gi|187771310|gb|EDU35154.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017168|gb|EDU55290.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|189002112|gb|EDU71098.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357595|gb|EDU76014.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362963|gb|EDU81382.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368261|gb|EDU86677.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372933|gb|EDU91349.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378906|gb|EDU97322.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC508]
 gi|208727746|gb|EDZ77347.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208733747|gb|EDZ82434.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741408|gb|EDZ89090.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160785|gb|ACI38218.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765098|gb|ACI80861.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765100|gb|ACI80862.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765102|gb|ACI80863.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765104|gb|ACI80864.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765106|gb|ACI80865.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|217320029|gb|EEC28454.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|254593577|gb|ACT72938.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. TW14359]
 gi|290763399|gb|ADD57360.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|320192094|gb|EFW66739.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. EC1212]
 gi|320641112|gb|EFX10591.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. G5101]
 gi|320646500|gb|EFX15419.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. 493-89]
 gi|320651597|gb|EFX19977.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. H 2687]
 gi|320657349|gb|EFX25151.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663051|gb|EFX30368.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667869|gb|EFX34777.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. LSU-61]
 gi|326339636|gb|EGD63447.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. 1125]
 gi|326344098|gb|EGD67859.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. 1044]
          Length = 166

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+ +LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHANLTPEAIPELLERY 165


>gi|296103966|ref|YP_003614112.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058425|gb|ADF63163.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 166

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A +L + 
Sbjct: 8   QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + ++++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQY 165


>gi|302336897|ref|YP_003802103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634082|gb|ADK79509.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 169

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L + QE+  ++    +  +A  L+++  R+  IATFY+ F L P G    ++VC  
Sbjct: 31  IIPILQKVQEEYRYLPEEVLLFLATSLEISPARLYGIATFYSHFSLEPKGKHV-IKVCDG 89

Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C ++G   LIE  R+ +  +K +   SD   + E V C GAC  AP+V+I    +  +
Sbjct: 90  TACHVKGSGALIETLRSMLALEKGIKTTSDMLFTLETVSCLGACGLAPVVVIDDTVHGQM 149

Query: 161 TPERLEEII 169
           TP+++  +I
Sbjct: 150 TPDKVRALI 158


>gi|282891846|ref|ZP_06300326.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498279|gb|EFB40618.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 171

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +EE+   + E+  RYP  R  SA+IP L  AQ + G++ R     VA + D+    V  
Sbjct: 2   LTEETRKSIIELQKRYPNKR--SALIPALHLAQAEIGYLPRDIQNEVAELFDIDSNEVNA 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  F   PVG    + VC    CMLRG + +++   ++++ +P    +DG  +   
Sbjct: 60  VVTFYDMFFDQPVGKHL-IHVCKNLSCMLRGADGVLKKICHRLNVEPHETTADGEFTVIP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            EC  AC  APMV++       ++ + +E I++      G    P P
Sbjct: 119 SECLAACDRAPMVLVDDKVVGPISEQDVEHILEEAKKSPG---HPSP 162


>gi|219851496|ref|YP_002465928.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
           palustris E1-9c]
 gi|219545755|gb|ACL16205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
           palustris E1-9c]
          Length = 162

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 26  VNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           ++++I+RY  P  R    V+ +L   Q QEG++ R  +E ++  LD+    +  + TFY 
Sbjct: 6   LDQIIARYASPTGR----VLGILSEVQHQEGYIPRDVLETLSQKLDLPLSDLYSLVTFYA 61

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--------- 134
            F L PVG    + VC  T C ++G   L+E  ++ +H +    + DG  S         
Sbjct: 62  LFSLKPVGEHV-ITVCMGTACHVKGAVSLLETLQDLLHLEGEAADEDGKFSLTTEDNRFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E   C GAC  AP++ +  + Y  +TPE L  I++ + 
Sbjct: 121 LEIARCFGACSIAPVLRVDGNLYGYVTPESLPGILEGYG 159


>gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit nuoE [Escherichia coli]
          Length = 166

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      V   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAVEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165


>gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
 gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
 gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
 gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
          Length = 294

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++RYP +R  SA++PLL   Q ++G ++ A I   AN L +    V  +ATFY+ ++ +
Sbjct: 46  IVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRT 103

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGAC 144
           P G    V VC  T C + G +++++  ++ +     Q          ++ E +EC  AC
Sbjct: 104 PTGDY-LVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAAC 162

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
             AP+VM+  + +++ TP    +++D+   G
Sbjct: 163 DYAPVVMVNWEFFDNQTPASARDLVDSLRAG 193


>gi|77919442|ref|YP_357257.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545525|gb|ABA89087.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 168

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I  L +AQ   G++     E VAN +++  ++V  + +FYT F + P G +  + VC  
Sbjct: 38  LITALHKAQSLFGYLPEEIQEYVANAMNVPVVQVFGVVSFYTFFTMIPKG-KHPISVCMG 96

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G +K+++  +N+++        DG  S + + C GAC  AP+V++G+  Y ++T
Sbjct: 97  TACFVKGADKVVDAFKNQLNVAVSEVTEDGKFSIDCLRCVGACALAPVVLVGEKVYANVT 156

Query: 162 PERLEEIIDAFS 173
           P+++++II  F+
Sbjct: 157 PDQVKDIIAEFA 168


>gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 610

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 87/166 (52%), Gaps = 4/166 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70
           +P S   + E    + EV  +    + +  V+P+L   Q+  G W+   A+++VA  L++
Sbjct: 6   KPVSAELTSEQVKRIREVCQQL--GKVKGKVLPILHAVQDICGNWLPLEALQLVAKELEI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
            Y  +  + TFY+ + ++P G R  +++C + PC + G E ++E  + ++  +     SD
Sbjct: 64  PYGYLYGVLTFYSMYSVTPRG-RYIIRMCESAPCHVNGAENILEALKEELGVEVGGTTSD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           G  + E   C G C  AP + I +  + +LT  +++EI+D +  G+
Sbjct: 123 GLFTLELTACLGTCEVAPAMQINEVVFGNLTGAKVKEILDNYRAGK 168


>gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
 gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
          Length = 294

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +++RYP +R  SA++PLL   Q ++G ++ A I   AN L +    V  +ATFY+ ++ +
Sbjct: 46  IVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYSMYRRT 103

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGAC 144
           P G    V VC  T C + G +++++  ++ +     Q          ++ E +EC  AC
Sbjct: 104 PTGDY-LVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIECNAAC 162

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
             AP+VM+  + +++ TP    +++D+   G
Sbjct: 163 DYAPVVMVNWEFFDNQTPTSARDLVDSLRAG 193


>gi|294788077|ref|ZP_06753321.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484370|gb|EFG32053.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 157

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++G+++   IE VA  + +  I   E
Sbjct: 2   LSAQSLKEIDIELAKYPADQRRSAIMGALRIAQVEKGYLAAETIEFVAQYVGIPAIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI 152
            EC GAC +AP++++
Sbjct: 121 GECMGACGDAPVMLL 135


>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 574

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ ++ RYP    QSA++P LM AQ E    + +  I  VA ++D+ + +   +AT+Y+ 
Sbjct: 10  IHRLLGRYPEK--QSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYGLATYYSM 67

Query: 85  FQL-SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           + +  PVG R H+QV    P  L G  ++++     ++ +      DG  +  EVEC  +
Sbjct: 68  YNVEKPVG-RYHLQVDTNIPATLMGAGEILDHLEKTLNIRAGETTPDGLFTLSEVECLAS 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C   P++ +    YE++T E+++ ++D+   G
Sbjct: 127 CGTCPVIQVNDVYYENMTREKVDSLLDSLRKG 158


>gi|217076872|ref|YP_002334588.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217036725|gb|ACJ75247.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 157

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ ++   +    +I +L+  Q++   + +  +  ++  LD+   ++  +ATFY QF
Sbjct: 8   VEEILKKHGYEK--KNLIKILLDVQKEYRHIPKEVVNYLSVALDIPPAKIFGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    + +C  T C + G   LI+    ++  KP     D   S ++V C GAC 
Sbjct: 66  SLKPKGEYT-ILICDGTACHMEGSMSLIKAIEEEVGVKPGEVTQDLKFSLDKVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            AP ++I  + Y +LTPE+ +EI+     G
Sbjct: 125 LAPAMVINGEVYGNLTPEKTKEILRKLKEG 154


>gi|261416515|ref|YP_003250198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372971|gb|ACX75716.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327348|gb|ADL26549.1| NADH-quinone oxidoreductase, E subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 353

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           +++SRYP    Q+A++ +L   Q   GWV R  I   AN+   A    L +ATFYT +  
Sbjct: 66  DLLSRYPVG--QAALLEVLWLVQGVFGWVPREGIRWAANVCGCAPAHALGVATFYTMYNH 123

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           +P G +  +Q C    C ++G   LI    + ++ K      DG  +  +VEC G+C N 
Sbjct: 124 APKG-KFLLQFCRNISCTIKGAPSLIAYVEHALNIKTGETTPDGLFTILQVECLGSCGNG 182

Query: 148 PMVMIGKDTYED 159
           PM+++  D   D
Sbjct: 183 PMMLVNDDFATD 194


>gi|222099660|ref|YP_002534228.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
           4359]
 gi|221572050|gb|ACM22862.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
           4359]
          Length = 165

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    ++E I +      +  +I +L +AQE  G++    +E +++ L++   +V  + 
Sbjct: 9   EELFKELDEFIEKNNYEGKKDVLIQVLHKAQELFGYLPADVLEFISDKLNVPLSKVYGVV 68

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  ++VC  T C ++G +++ E    ++   P    SDG  S   V 
Sbjct: 69  TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVSPDEPTSDGLFSVHGVR 127

Query: 140 CQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
           C GAC  AP+VM+   D Y  +TP+ + +II+ +
Sbjct: 128 CLGACSMAPVVMVDDSDFYGRVTPDMVPQIINKY 161


>gi|255525708|ref|ZP_05392640.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296184812|ref|ZP_06853223.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255510610|gb|EET86918.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296050594|gb|EFG90017.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 166

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +++V  +Y   +    ++ +L  AQ+  G++    ++ +A+       +V  +ATFY+Q
Sbjct: 13  LMDKVFDKY--YKGNGNIVSMLQDAQDIYGYLPLDVLKAIADKTGNKRTKVYGVATFYSQ 70

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+L+P G    +Q C  T C +   E +     +++   P   +SDG  S+E V C G C
Sbjct: 71  FRLNPRGKYMILQ-CQGTACHVNNSEVIGNAICDELGINPGETSSDGMFSFEHVACLGCC 129

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP++MI  + Y +LTP+++ +II
Sbjct: 130 SLAPVIMINGEAYGNLTPDKVRKII 154


>gi|332981825|ref|YP_004463266.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Mahella australiensis 50-1 BON]
 gi|332699503|gb|AEE96444.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Mahella australiensis 50-1 BON]
          Length = 162

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V+R  EE+FQ             +  VI RY     +  ++P++ +AQE  G++    
Sbjct: 3   IEVKRELEEKFQE------------LKTVIDRY--KNMEGPLMPIMHKAQEIFGYLPLEV 48

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
              +A  LD+    V  +ATFY+ F L P G +  + +C  T C ++G +K+++  + ++
Sbjct: 49  QNFIAEELDIPLTDVYGVATFYSHFTLQPQG-KYTINICLGTACYVKGAQKVLDKLKEEL 107

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                    DG  + +   C GAC  AP++MI  + Y  L P+ + +I+  +
Sbjct: 108 KINEGETTPDGKFTIDATRCLGACGLAPVMMINGEVYGRLVPDDVPKILKRY 159


>gi|310778427|ref|YP_003966760.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747750|gb|ADO82412.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 162

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++ +     VA  LD+   +V  + +FY+ F ++P G +  + V
Sbjct: 26  QGALITVLHKAQEIFGYLPKEIQSFVAERLDLPLAKVYGVVSFYSFFTMTPKG-KYPISV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  K++E  + ++  +     SDG  S + + C GAC  AP+V++G+D + 
Sbjct: 85  CMGTACYVRGAGKVLEDFQKQLGIEVGETTSDGIFSIDALRCVGACGLAPVVLVGEDVFG 144

Query: 159 DLTPERLEEIIDAF 172
               + ++ I+D +
Sbjct: 145 KDEAKDVKTILDTY 158


>gi|289522360|ref|ZP_06439214.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289504196|gb|EFD25360.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 166

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 4/139 (2%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           I LL + QE  G++ +  +  VA  LD+    +  +ATFY  F+  P+G +  +++C  T
Sbjct: 27  ISLLSKIQESYGYLPQEVLSRVAKELDIPEASLYGVATFYAMFRFKPLG-KYTIKLCRGT 85

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
            C ++G   + +     +         DG  + E V C G C  AP++M+G+D Y  LTP
Sbjct: 86  ACHVQGSLLIAQEVMRHLGISEGETTDDGLFTLELVACLGCCSLAPVMMVGEDVYGRLTP 145

Query: 163 ERLEEIIDAFST---GQGD 178
           +R  +++D++ T   G+G+
Sbjct: 146 DRAVKVLDSYRTNKRGEGN 164


>gi|154249677|ref|YP_001410502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153613|gb|ABS60845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 164

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQE  GW+ +   E VA  L +    V  + TFY  F   P G +  ++VC  
Sbjct: 28  LIGVLHKAQELFGWLPQEVQEHVAERLGVPISEVYGVVTFYNFFATKPKG-KNQIKVCLG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDL 160
           T C ++G ++++E    ++  K      DG  S   V C GAC  AP+V++G KD Y  +
Sbjct: 87  TACYVKGADRVMERFLEELGVKAEEVTEDGLFSVHPVRCLGACSMAPVVLVGEKDFYGKV 146

Query: 161 TPERLEEIIDAFSTG 175
           TP+ + +II A+  G
Sbjct: 147 TPDMVSKIIAAYRRG 161


>gi|268323920|emb|CBH37508.1| putative Fe-only hydrogenase [uncultured archaeon]
          Length = 157

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E+I+    S  ++A++  L   Q   G++++ AI  + + LD+  + +  + TFY   
Sbjct: 10  VDEIINDIGKS--EAALLQCLEAVQRDVGYITQDAITYLRDELDVPSVEIYGVMTFYGML 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G +  ++VC + PC L G + +IE   N++  K      D   + E V C G C 
Sbjct: 68  TAEQQG-KYVIRVCNSLPCYLNGSKMIIETLENELGIKSGETAEDANFTLETVACLGLCD 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
           NAP ++I ++ Y +LT E+++EII A
Sbjct: 127 NAPAMIINREIYGNLTEEKVKEIIKA 152


>gi|283786353|ref|YP_003366218.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
           ICC168]
 gi|282949807|emb|CBG89430.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
           ICC168]
          Length = 166

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERY 165


>gi|221090843|ref|XP_002168613.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial [Hydra magnipapillata]
          Length = 101

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + V + K+   P     D   +  EVEC GACVNAPMV I  + YEDL P  + EII++ 
Sbjct: 1   MSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESL 60

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSL 200
           +  +G   +PGP+  R +S PAGGLTSL
Sbjct: 61  A--KGIIPKPGPRSGRFASEPAGGLTSL 86


>gi|261340673|ref|ZP_05968531.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317087|gb|EFC56025.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|295098076|emb|CBK87166.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 166

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A +L + 
Sbjct: 8   QTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYEIAKVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + ++++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQY 165


>gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
           SK121]
 gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
           SK121]
          Length = 274

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 29  VISRY-----PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           VI+RY       +  +SA++PLL   Q ++G+++ A I+  +  L +    V  ++TFY+
Sbjct: 48  VIARYREPDAAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYS 107

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDGTLSWE 136
            ++  P G    V VC  T C + G + ++      +               SDG ++ E
Sbjct: 108 MYRRGPTGEYL-VGVCTNTLCAIMGGDDILAALEEHLGSAGSRDEGGHSISTSDGKITLE 166

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +EC  AC  AP++MI  + +++ TPE    ++DA   G+
Sbjct: 167 HIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGE 206


>gi|293415578|ref|ZP_06658221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
 gi|291433226|gb|EFF06205.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
          Length = 166

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165


>gi|302388829|ref|YP_003824650.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
           16646]
 gi|302199457|gb|ADL07027.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
           16646]
          Length = 175

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I +L + Q+  G++ R A+  +A  + +   +V  +ATFY QF+L P+G    + VC
Sbjct: 37  GSLITVLQKVQDIYGYLPRKALYHIAREIGVKPAKVFGVATFYAQFRLKPIGKHL-IMVC 95

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C + G E +     +++  K     +DG  + + V C G C  AP++MI  + Y  
Sbjct: 96  HGTACHVNGAELITSALCDELKIKDGETTADGLFTLQNVACLGCCSLAPVMMIDGEAYGK 155

Query: 160 LTPERLEEII 169
           LTP++  ++I
Sbjct: 156 LTPDKARDVI 165


>gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
 gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
          Length = 274

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 29  VISRY--PPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           VI+RY  P S     +SA++PLL   Q ++G+++ A I+  +  L +    V  ++TFY+
Sbjct: 48  VIARYREPDSAATTSRSALLPLLHLVQSEDGYITPAGIDFCSAKLGLTGAEVAAVSTFYS 107

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-------RNSDGTLSWE 136
            ++  P G    V VC  T C + G + ++      +               SDG ++ E
Sbjct: 108 MYRRGPTG-EYLVGVCTNTLCAIMGGDDILAALEEHLGSTGSRDEGGHSISTSDGKITLE 166

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +EC  AC  AP++MI  + +++ TPE    ++DA   G+
Sbjct: 167 HIECNAACDYAPVMMINWEFFDNQTPESARSLVDALRAGE 206


>gi|325291005|ref|YP_004267186.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
 gi|324966406|gb|ADY57185.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
          Length = 154

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 42  VIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +I +++  Q+  G  ++ +  +E VA  L+M   +V  + TFY  F     G +  ++VC
Sbjct: 18  LIQIMLELQQLSGNNYLPQEWVEEVAKALEMPMSKVYGVMTFYAMFDTEKRG-KNLIEVC 76

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            + PC + G E ++E+    +  KP     DG  + E   C GAC  AP + IG++ Y +
Sbjct: 77  KSGPCHVAGAENVMELLEEALRIKPGETTDDGLFTLEYSACFGACDIAPAIKIGENVYGN 136

Query: 160 LTPERLEEIIDAFSTG 175
           LT  +L+EII+++  G
Sbjct: 137 LTEAKLKEIINSYKEG 152


>gi|16130220|ref|NP_416788.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113657|ref|NP_708167.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 301]
 gi|26248672|ref|NP_754712.1| NADH dehydrogenase subunit E [Escherichia coli CFT073]
 gi|30063711|ref|NP_837882.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 2457T]
 gi|74312803|ref|YP_311222.1| NADH dehydrogenase subunit E [Shigella sonnei Ss046]
 gi|82544763|ref|YP_408710.1| NADH dehydrogenase subunit E [Shigella boydii Sb227]
 gi|89109103|ref|AP_002883.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. W3110]
 gi|91211577|ref|YP_541563.1| NADH dehydrogenase subunit E [Escherichia coli UTI89]
 gi|110642489|ref|YP_670219.1| NADH dehydrogenase subunit E [Escherichia coli 536]
 gi|110806248|ref|YP_689768.1| NADH dehydrogenase subunit E [Shigella flexneri 5 str. 8401]
 gi|117624474|ref|YP_853387.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
 gi|157154944|ref|YP_001463628.1| NADH dehydrogenase subunit E [Escherichia coli E24377A]
 gi|157161773|ref|YP_001459091.1| NADH dehydrogenase subunit E [Escherichia coli HS]
 gi|170019406|ref|YP_001724360.1| NADH dehydrogenase subunit E [Escherichia coli ATCC 8739]
 gi|170081902|ref|YP_001731222.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683908|ref|YP_001744483.1| NADH dehydrogenase subunit E [Escherichia coli SMS-3-5]
 gi|170767591|ref|ZP_02902044.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
           TW07627]
 gi|187730819|ref|YP_001881106.1| NADH dehydrogenase subunit E [Shigella boydii CDC 3083-94]
 gi|188496197|ref|ZP_03003467.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
 gi|191170105|ref|ZP_03031659.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
 gi|193062229|ref|ZP_03043324.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
 gi|193068223|ref|ZP_03049187.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
 gi|194427174|ref|ZP_03059725.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
 gi|194433323|ref|ZP_03065603.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
 gi|194436177|ref|ZP_03068279.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
 gi|209919733|ref|YP_002293817.1| NADH dehydrogenase subunit E [Escherichia coli SE11]
 gi|215487498|ref|YP_002329929.1| NADH dehydrogenase subunit E [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218548266|ref|YP_002382057.1| NADH dehydrogenase subunit E [Escherichia fergusonii ATCC 35469]
 gi|218554841|ref|YP_002387754.1| NADH dehydrogenase subunit E [Escherichia coli IAI1]
 gi|218559198|ref|YP_002392111.1| NADH dehydrogenase subunit E [Escherichia coli S88]
 gi|218690445|ref|YP_002398657.1| NADH dehydrogenase subunit E [Escherichia coli ED1a]
 gi|218695884|ref|YP_002403551.1| NADH dehydrogenase subunit E [Escherichia coli 55989]
 gi|218700759|ref|YP_002408388.1| NADH dehydrogenase subunit E [Escherichia coli IAI39]
 gi|218705815|ref|YP_002413334.1| NADH dehydrogenase subunit E [Escherichia coli UMN026]
 gi|227887341|ref|ZP_04005146.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
 gi|237704759|ref|ZP_04535240.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901460|ref|YP_002927256.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
 gi|253772793|ref|YP_003035624.1| NADH dehydrogenase subunit E [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162294|ref|YP_003045402.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
 gi|256017559|ref|ZP_05431424.1| NADH dehydrogenase subunit E [Shigella sp. D9]
 gi|256022031|ref|ZP_05435896.1| NADH dehydrogenase subunit E [Escherichia sp. 4_1_40B]
 gi|260844872|ref|YP_003222650.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
           str. 12009]
 gi|260856329|ref|YP_003230220.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
           str. 11368]
 gi|260869008|ref|YP_003235410.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
           str. 11128]
 gi|293405751|ref|ZP_06649743.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
 gi|293410645|ref|ZP_06654221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
 gi|293446622|ref|ZP_06663044.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
 gi|297519442|ref|ZP_06937828.1| NADH dehydrogenase subunit E [Escherichia coli OP50]
 gi|298381434|ref|ZP_06991033.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
 gi|300818114|ref|ZP_07098326.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
 gi|300822156|ref|ZP_07102298.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
 gi|300896959|ref|ZP_07115440.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
 gi|300903670|ref|ZP_07121586.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
 gi|300918550|ref|ZP_07135140.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
 gi|300924544|ref|ZP_07140508.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
 gi|300931362|ref|ZP_07146693.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
 gi|300936850|ref|ZP_07151739.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
 gi|300948571|ref|ZP_07162664.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
 gi|300956455|ref|ZP_07168744.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
 gi|300981073|ref|ZP_07175345.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
 gi|300983380|ref|ZP_07176564.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
 gi|301024083|ref|ZP_07187797.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
 gi|301026955|ref|ZP_07190348.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
 gi|301049038|ref|ZP_07196023.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
 gi|301303256|ref|ZP_07209381.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
 gi|301328777|ref|ZP_07221825.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
 gi|301647618|ref|ZP_07247414.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
 gi|307138949|ref|ZP_07498305.1| NADH dehydrogenase subunit E [Escherichia coli H736]
 gi|307311155|ref|ZP_07590799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
 gi|309793164|ref|ZP_07687592.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
 gi|312967583|ref|ZP_07781798.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
 gi|312973456|ref|ZP_07787628.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
 gi|331642923|ref|ZP_08344058.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
 gi|331647940|ref|ZP_08349032.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
 gi|331653727|ref|ZP_08354728.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
 gi|331658367|ref|ZP_08359329.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
 gi|331663800|ref|ZP_08364710.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
 gi|331668983|ref|ZP_08369831.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
 gi|331678231|ref|ZP_08378906.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
 gi|331683956|ref|ZP_08384552.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
 gi|332278569|ref|ZP_08390982.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
 gi|84028748|sp|P0AFD2|NUOE_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E; AltName: Full=NUO5
 gi|84028749|sp|P0AFD1|NUOE_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E; AltName: Full=NUO5
 gi|84028750|sp|P0AFD3|NUOE_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [Escherichia coli CFT073]
 gi|431019|gb|AAA03536.1| NADH dehydrogenase [Escherichia coli]
 gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799646|dbj|BAA16114.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K12
           substr. W3110]
 gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 301]
 gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 2457T]
 gi|73856280|gb|AAZ88987.1| NADH dehydrogenase I chain E [Shigella sonnei Ss046]
 gi|81246174|gb|ABB66882.1| NADH dehydrogenase I chain E [Shigella boydii Sb227]
 gi|91073151|gb|ABE08032.1| NADH dehydrogenase I chain E [Escherichia coli UTI89]
 gi|110344081|gb|ABG70318.1| NADH dehydrogenase I chain E [Escherichia coli 536]
 gi|110615796|gb|ABF04463.1| NADH dehydrogenase I chain E [Shigella flexneri 5 str. 8401]
 gi|115513598|gb|ABJ01673.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
 gi|157067453|gb|ABV06708.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli HS]
 gi|157076974|gb|ABV16682.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E24377A]
 gi|169754334|gb|ACA77033.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli ATCC 8739]
 gi|169889737|gb|ACB03444.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123925|gb|EDS92856.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
           TW07627]
 gi|170521626|gb|ACB19804.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli SMS-3-5]
 gi|187427811|gb|ACD07085.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii CDC
           3083-94]
 gi|188491396|gb|EDU66499.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
 gi|190909621|gb|EDV69206.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
 gi|192931895|gb|EDV84494.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
 gi|192958502|gb|EDV88941.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
 gi|194414795|gb|EDX31066.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
 gi|194418417|gb|EDX34506.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
 gi|194424905|gb|EDX40890.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
 gi|209912992|dbj|BAG78066.1| NADH dehydrogenase I chain E [Escherichia coli SE11]
 gi|215265570|emb|CAS09973.1| NADH: ubiquinone oxidoreductase, chain E [Escherichia coli O127:H6
           str. E2348/69]
 gi|218352616|emb|CAU98397.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 55989]
 gi|218355807|emb|CAQ88420.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
           ATCC 35469]
 gi|218361609|emb|CAQ99201.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI1]
 gi|218365967|emb|CAR03711.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli S88]
 gi|218370745|emb|CAR18558.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI39]
 gi|218428009|emb|CAR08930.2| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli ED1a]
 gi|218432912|emb|CAR13806.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli UMN026]
 gi|222034041|emb|CAP76782.1| NadH-quinone oxidoreductase subunit E [Escherichia coli LF82]
 gi|226901125|gb|EEH87384.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835691|gb|EEJ46157.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
 gi|238861869|gb|ACR63867.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
 gi|242377918|emb|CAQ32687.1| NADH:ubiquinone oxidoreductase, chain E, subunit of soluble NADH
           dehydrogenase fragment and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323837|gb|ACT28439.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974195|gb|ACT39866.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
 gi|253978362|gb|ACT44032.1| NADH dehydrogenase subunit E [Escherichia coli BL21(DE3)]
 gi|257754978|dbj|BAI26480.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
           str. 11368]
 gi|257760019|dbj|BAI31516.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
           str. 12009]
 gi|257765364|dbj|BAI36859.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
           str. 11128]
 gi|260448622|gb|ACX39044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli DH1]
 gi|281179372|dbj|BAI55702.1| NADH dehydrogenase I chain E [Escherichia coli SE15]
 gi|281601726|gb|ADA74710.1| NADH-quinone oxidoreductase subunit E [Shigella flexneri 2002017]
 gi|284922273|emb|CBG35358.1| NADH-quinone oxidoreductase subunit E [Escherichia coli 042]
 gi|291323452|gb|EFE62880.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
 gi|291427959|gb|EFF00986.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
 gi|291471113|gb|EFF13597.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
 gi|294493972|gb|ADE92728.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli IHE3034]
 gi|298278876|gb|EFI20390.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
 gi|299879502|gb|EFI87713.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
 gi|300299147|gb|EFJ55532.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
 gi|300307686|gb|EFJ62206.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
 gi|300316725|gb|EFJ66509.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
 gi|300359227|gb|EFJ75097.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
 gi|300396739|gb|EFJ80277.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
 gi|300404326|gb|EFJ87864.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
 gi|300408546|gb|EFJ92084.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
 gi|300414285|gb|EFJ97595.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
 gi|300419262|gb|EFK02573.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
 gi|300451919|gb|EFK15539.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
 gi|300458037|gb|EFK21530.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
 gi|300460824|gb|EFK24317.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
 gi|300525286|gb|EFK46355.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
 gi|300529258|gb|EFK50320.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
 gi|300841430|gb|EFK69190.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
 gi|300844839|gb|EFK72599.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
 gi|301074245|gb|EFK89051.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
 gi|306908661|gb|EFN39158.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
 gi|307554347|gb|ADN47122.1| NADH dehydrogenase I chain E [Escherichia coli ABU 83972]
 gi|307626179|gb|ADN70483.1| NADH dehydrogenase subunit E [Escherichia coli UM146]
 gi|308123450|gb|EFO60712.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
 gi|309702597|emb|CBJ01925.1| NADH-quinone oxidoreductase subunit E [Escherichia coli ETEC
           H10407]
 gi|310332051|gb|EFP99286.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
 gi|312287780|gb|EFR15685.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
 gi|312946903|gb|ADR27730.1| NADH dehydrogenase subunit E [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651108|gb|EFS15507.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2a str.
           2457T]
 gi|315061577|gb|ADT75904.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli W]
 gi|315136919|dbj|BAJ44078.1| NADH dehydrogenase subunit E [Escherichia coli DH1]
 gi|315255219|gb|EFU35187.1| NADH dehydrogenase subunit E [Escherichia coli MS 85-1]
 gi|315285915|gb|EFU45353.1| NADH dehydrogenase subunit E [Escherichia coli MS 110-3]
 gi|315298116|gb|EFU57385.1| NADH dehydrogenase subunit E [Escherichia coli MS 16-3]
 gi|315615554|gb|EFU96186.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 3431]
 gi|320177167|gb|EFW52179.1| NADH-ubiquinone oxidoreductase chain E [Shigella dysenteriae CDC
           74-1112]
 gi|320178742|gb|EFW53705.1| NADH-ubiquinone oxidoreductase chain E [Shigella boydii ATCC 9905]
 gi|320183380|gb|EFW58232.1| NADH-ubiquinone oxidoreductase chain E [Shigella flexneri CDC
           796-83]
 gi|320196152|gb|EFW70776.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli WV_060327]
 gi|320199873|gb|EFW74462.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli EC4100B]
 gi|323156435|gb|EFZ42590.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli EPECa14]
 gi|323161619|gb|EFZ47504.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E128010]
 gi|323168545|gb|EFZ54225.1| NADH-quinone oxidoreductase, E subunit [Shigella sonnei 53G]
 gi|323171967|gb|EFZ57611.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli LT-68]
 gi|323176790|gb|EFZ62380.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1180]
 gi|323184396|gb|EFZ69772.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1357]
 gi|323187990|gb|EFZ73285.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli RN587/1]
 gi|323377843|gb|ADX50111.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli KO11]
 gi|323936575|gb|EGB32862.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli
           E1520]
 gi|323941018|gb|EGB37205.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli E482]
 gi|323944798|gb|EGB40864.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli H120]
 gi|323952078|gb|EGB47952.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H252]
 gi|323956051|gb|EGB51804.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H263]
 gi|323961468|gb|EGB57078.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H489]
 gi|323967726|gb|EGB63138.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli M863]
 gi|323973010|gb|EGB68204.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli TA007]
 gi|323977514|gb|EGB72600.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli TW10509]
 gi|324006665|gb|EGB75884.1| NADH dehydrogenase subunit E [Escherichia coli MS 57-2]
 gi|324013175|gb|EGB82394.1| NADH dehydrogenase subunit E [Escherichia coli MS 60-1]
 gi|324020881|gb|EGB90100.1| NADH dehydrogenase subunit E [Escherichia coli MS 117-3]
 gi|324117837|gb|EGC11736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli E1167]
 gi|325496680|gb|EGC94539.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
           ECD227]
 gi|327252555|gb|EGE64214.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli STEC_7v]
 gi|330912110|gb|EGH40620.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli AA86]
 gi|331039721|gb|EGI11941.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
 gi|331043664|gb|EGI15802.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
 gi|331048576|gb|EGI20652.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
 gi|331056615|gb|EGI28624.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
 gi|331059599|gb|EGI31576.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
 gi|331064177|gb|EGI36088.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
 gi|331074691|gb|EGI46011.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
 gi|331078908|gb|EGI50110.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
 gi|332088415|gb|EGI93533.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 5216-82]
 gi|332090613|gb|EGI95709.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae
           155-74]
 gi|332093637|gb|EGI98695.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 3594-74]
 gi|332100921|gb|EGJ04267.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
 gi|332344066|gb|AEE57400.1| NADH oxidoreductase NuoE [Escherichia coli UMNK88]
 gi|332754933|gb|EGJ85298.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 4343-70]
 gi|332755334|gb|EGJ85698.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-671]
 gi|332756245|gb|EGJ86596.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2747-71]
 gi|332766104|gb|EGJ96314.1| nuoE [Shigella flexneri 2930-71]
 gi|333001429|gb|EGK20997.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri VA-6]
 gi|333002028|gb|EGK21594.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-218]
 gi|333002652|gb|EGK22212.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-272]
 gi|333016346|gb|EGK35677.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-304]
 gi|333016536|gb|EGK35866.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-227]
          Length = 166

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165


>gi|324112817|gb|EGC06793.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia fergusonii B253]
          Length = 166

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERY 165


>gi|291285961|ref|YP_003502777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883121|gb|ADD66821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 168

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A IP+L + Q+  G++    +E +A+ L+M+  ++  + TFY QF   P G +  ++VC
Sbjct: 29  GATIPVLQKTQDAYGFLFPELVERIADNLNMSPHQIYGVITFYAQFYTKPRG-KYIIRVC 87

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++ E+ + +        + D   + EEV C GAC  AP++MI   TY +
Sbjct: 88  RGTACHVQGSGRISEIVKEEFKISNGETSGDLKFTLEEVSCIGACGMAPVIMINNKTYGN 147

Query: 160 LTPERLEEIIDAFST 174
           L PE   +I   ++ 
Sbjct: 148 LKPEDARKIFREYAN 162


>gi|169247657|gb|ACA51657.1| HydC [Thermoanaerobacterium saccharolyticum]
          Length = 160

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FSEE+   + +VI +   +    ++I ++  AQE  G++     + ++  +++    +  
Sbjct: 8   FSEENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           IATFY++F L P G +  + VC  T C ++G   +++  + K+         DG  S E 
Sbjct: 66  IATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEA 124

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++MI  + +  LTP+ +E+I+  F
Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159


>gi|154495356|ref|ZP_02034361.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
           43184]
 gi|154085280|gb|EDN84325.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
           43184]
          Length = 165

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++ R   E++A  L +   +V  + TFY+ F ++P G +  + VC  
Sbjct: 30  LINILHAAQGIFGYLPREVQEIIAGRLYIPVSKVYGVVTFYSFFTMTPKG-KYPISVCLG 88

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EK++E  + ++  K     SDG  S + + C GAC  AP+V I    Y  LT
Sbjct: 89  TACYVRGAEKVLEEFQRQLEIKVGETTSDGLFSLDCLRCVGACGLAPVVTIAGKVYGRLT 148

Query: 162 PERLEEIIDAF 172
           PE++ +I+  +
Sbjct: 149 PEKVRDILSEY 159


>gi|317048936|ref|YP_004116584.1| NADH-quinone oxidoreductase subunit E [Pantoea sp. At-9b]
 gi|316950553|gb|ADU70028.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. At-9b]
          Length = 171

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +++A +   P+  F  SE     +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQKIAIQTIDPNEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +H KP     DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LHIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIATLLEQY 170


>gi|51892728|ref|YP_075419.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
           14863]
 gi|51856417|dbj|BAD40575.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
           14863]
          Length = 274

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 5/156 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRA-QEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYT 83
           V  ++ RYP  R +SA++PLL  A +E+EG +++++ IE VA I  +A   V  + +FYT
Sbjct: 18  VEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCSFYT 77

Query: 84  QFQLSPVGTRAHVQVCGTTPC-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV-ECQ 141
            F+  PVG +  + VCG   C +L G  +L+E     +  K      DG ++ E   EC 
Sbjct: 78  MFRRQPVG-KYLITVCGNMACHLLAGGSQLVEHMEKTLGIKVGETTPDGLITLEVTGECL 136

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            AC  AP++ +  +    +T E+ + ++ A   G+G
Sbjct: 137 AACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEG 172


>gi|297618251|ref|YP_003703410.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146088|gb|ADI02845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 180

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  +I +YP  +    ++P++   Q++  ++ + A+E+ A  +      V  +ATFY  F
Sbjct: 26  VQPIIDKYPAEK--RYILPIMQDIQKRFNYLPKEALEIAAAYVGAPVSLVYSMATFYKAF 83

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R H ++C  T C ++  + +++     I  +P     DG  S E V C GAC 
Sbjct: 84  SLVPRG-RVHFRMCDGTACHIKSSQVILDEIHKCIGIRPGETTPDGQFSLETVNCLGACA 142

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP+++  +  +  +TP  + EII  + 
Sbjct: 143 LAPVLVANQKVHPKVTPAAMREIIKQYG 170


>gi|238753751|ref|ZP_04615112.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
 gi|238707987|gb|EEQ00344.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
          Length = 187

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE     ++F  S E    +      Y  +R  +A I  L   Q++ GWV   AI  +A+
Sbjct: 24  AESATTMAAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAAISKKLSIQPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+ DL PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSDLKPEEIEQLLEQY 186


>gi|66046429|ref|YP_236270.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257136|gb|AAY38232.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|330954560|gb|EGH54820.1| NADH dehydrogenase subunit E [Pseudomonas syringae Cit 7]
 gi|330972910|gb|EGH72976.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 165

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +N +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKNSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|191166488|ref|ZP_03028318.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
 gi|190903448|gb|EDV63167.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
          Length = 166

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMYHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165


>gi|315292242|gb|EFU51594.1| NADH dehydrogenase subunit E [Escherichia coli MS 153-1]
          Length = 166

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSLVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERY 165


>gi|118581918|ref|YP_903168.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118504628|gb|ABL01111.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
          Length = 172

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
           P+R +  ++ +L +AQ+  G++ R   + VA+++ ++  +V  +A+FYT F + P G + 
Sbjct: 37  PTR-EGHLVTVLHKAQQLFGYLPREVQQYVADLMGVSLAKVYGVASFYTFFSMVPKG-KY 94

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  T C ++   K+++  ++ +  +      DG  S + + C GAC  AP++ +G+
Sbjct: 95  PISICMGTACYVKQAHKIVDAFKDILGVEIGEVTGDGKFSIDVLRCVGACALAPILTVGE 154

Query: 155 DTYEDLTPERLEEII 169
             Y  +TP++++EII
Sbjct: 155 KVYAHVTPDQVKEII 169


>gi|253576870|ref|ZP_04854195.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843737|gb|EES71760.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 174

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    V E+I ++   +   A+IP+L   Q+  G++   A+++V+  L M+   +  +A
Sbjct: 18  EERLHRVGEIIDQF--RQLPGALIPVLHEIQDLYGYLPEEALQIVSRELGMSMAEIYGVA 75

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F L P G    ++VC  T C ++G + +++    +++       +DG  + +   
Sbjct: 76  TFYSFFSLEPKGEHI-IRVCMGTACYIKGAQGVLDRLSQELNVPVQGTTADGKFTLDATR 134

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C GAC  AP++ IG+  +  LTP  + +I+    T
Sbjct: 135 CLGACGLAPVMTIGEKVHGRLTPNEIPKILKQMRT 169


>gi|304311498|ref|YP_003811096.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
 gi|301797231|emb|CBL45451.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
          Length = 167

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + +  + E    +   +  Y   R  +A I  L   Q + GWV   AI  +A IL +   
Sbjct: 11  APYEMAAEDRAEIEHSLHHYDDPR--AASIDALKVIQRRHGWVPNNAIREIALILQIPDS 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY +   SPVG R  + VC +  C L G E++    + ++  KP    SD   
Sbjct: 69  DVEGVATFYNRIYRSPVG-RHVITVCDSIGCFLTGFEEVYAALQQRLGIKPGQTTSDNRF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     C GAC   P++MI  DTY +LT ++L+ +++ ++
Sbjct: 128 TLIPTCCLGACDRGPVLMINDDTYFNLTVDQLDALLEKYA 167


>gi|254445571|ref|ZP_05059047.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198259879|gb|EDY84187.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 160

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 9/153 (5%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E+   +   I +YP    QSAV+PLL   Q+ +G ++  A E VA  L +A I VL + +
Sbjct: 6   ETLAEIEAAIPKYPEK--QSAVMPLLHAIQKDQGTLTNEAAEWVAEKLGIAPINVLSVIS 63

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEE 137
           FY  F+   +G R H++VC T  C + G  K   VC   + +     N    DG ++ E 
Sbjct: 64  FYPFFRQHQIGKR-HIRVCRTLSCAMAGGAK---VCDRMLKEFETELNGVSPDGEVTVEF 119

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            EC  +C +AP++++ ++ +E+L   + +EI D
Sbjct: 120 AECLASCGSAPVMLVDEELHENLDEAKAKEICD 152


>gi|154249674|ref|YP_001410499.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153610|gb|ABS60842.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 161

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 39  QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           +  ++ LL R Q+  Q  ++     E++A  L++   +V E+ TFYT F   P G +  +
Sbjct: 21  RDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYTMFSTKPRG-KYII 79

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC + PC + G  ++++  + K+         DG  + EE  C G C  +P++M+    
Sbjct: 80  RVCTSLPCHVPGGREIVQFLKQKLGVDFGETTKDGLFTLEETGCLGLCGVSPVIMVNDQY 139

Query: 157 YEDLTPERLEEIIDAFSTGQG 177
           Y DLT E++ EII+    G+G
Sbjct: 140 YGDLTVEKVNEIIENLKGGEG 160


>gi|300246021|gb|ADJ94068.1| putative anaerobic benzoate-degrading protein BamG [Clostridia
           bacterium enrichment culture clone BF]
          Length = 161

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           + A+ + +V + Y   +   A+IP+L +AQE  G++    +  V+  L +   ++  + T
Sbjct: 12  KEALELEKVFAEYRGKK--GALIPVLQKAQEIYGYLPAEVLREVSRNLQIPVSKIFGVVT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY QF L P G R  V+VC  T C +RG  K+ E     I         D   ++E V C
Sbjct: 70  FYAQFHLHPRG-RNIVRVCLGTACHVRGGAKISEAVTKAIGIIDGETTEDLRYTFESVAC 128

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP++M+  +T+  LTP+ ++ +++ +
Sbjct: 129 LGACGLAPVMMVNDETHGRLTPDMVKGLLEQY 160


>gi|260892083|ref|YP_003238180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864224|gb|ACX51330.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
          Length = 149

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I  L+  Q   G++   A+  +A  L +   +V  +ATFY QF+L P G    V VC  
Sbjct: 20  LIAALLALQRHYGYLPEPALRTLAQELGVPLSKVYGVATFYAQFRLKPRGKHT-VCVCLG 78

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E++    + ++  +P    +DG  + E V C GAC  AP+V++ ++T+  L 
Sbjct: 79  TACHVRGSEQIFHALKRELGVEPGDTTADGRFTLEVVSCVGACSMAPVVVVDEETHGRLD 138

Query: 162 PERLEEIIDAF 172
           PE+   ++  +
Sbjct: 139 PEKALALLKKY 149


>gi|21672440|ref|NP_660507.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008858|sp|Q8K9Y4|NUOE_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 168

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           Y  SR  S  I  L   Q++ GWV   AI  +ANIL++    V  +ATFY+Q    PVG 
Sbjct: 31  YENSR--SVSIEALKIVQKKRGWVCDQAIIEIANILNLNPSEVESVATFYSQIYRQPVG- 87

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  ++ C +  C L G EK+ +   + +  K  +   DG  +   V C G C  AP +MI
Sbjct: 88  RNVIRYCDSVVCYLTGYEKIKKFLEDYLFIKIGNTTVDGRFTLLPVCCLGNCDKAPTIMI 147

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +D Y  L P+ +  +++ +
Sbjct: 148 NEDLYSHLNPDLIPNLLELY 167


>gi|157364372|ref|YP_001471139.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
 gi|157314976|gb|ABV34075.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
          Length = 162

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 42  VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +I +L R Q+  G ++   A E+VA  L++   +V E+ TFYT F   P G R  ++VC 
Sbjct: 25  LINILHRIQDHFGNYIPPEAAEIVAEELNVPPSKVYEVLTFYTMFSTKPRG-RYVIRVCV 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
             PC + G  ++++  +  ++ K      DG  + E   C G C  AP++MI    Y DL
Sbjct: 84  NLPCHVTGGREIVKTIQEMLNVKFGETTEDGLFTLETTSCLGLCGVAPVIMINDQYYGDL 143

Query: 161 TPERLEEIIDAFSTG 175
           T +++ EII++   G
Sbjct: 144 TVKKIREIIESLRQG 158


>gi|268323354|emb|CBH36942.1| putative NADH-quinone oxidoreductase chain E [uncultured archaeon]
          Length = 153

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E+I RY     +  +I LL+  Q +  W+S+ AI  ++  + +   ++  IA+FY   
Sbjct: 9   VDEIIERYKGE--EGVLIQLLLDVQSEFNWISKEAITQISERMQIPKSQIYRIASFYEAM 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L PVG R  +QVC  T C +RG  K+++     +  K     SD   S + V C G C 
Sbjct: 67  SLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCLGCCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P++++    +  +TP  +E I++ +
Sbjct: 126 MGPVIVVDGIYHGKITPAMVEGILETY 152


>gi|294637176|ref|ZP_06715484.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
 gi|291089640|gb|EFE22201.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
          Length = 166

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S F  S+ +   +   I  Y   R  +A I  L   Q++ GWV  AAI+ +A +L +   
Sbjct: 10  SVFVLSDNARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDAAIDAIAEVLGIPAA 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  V+ C +  C + G + +       ++ +P     DG  
Sbjct: 68  DVEGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLNIQPGETTCDGRF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI +D ++ LTPER  E+++ +
Sbjct: 127 TLLPTCCLGNCDKGPNMMIDEDLHDHLTPERAIELLERY 165


>gi|328953056|ref|YP_004370390.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453380|gb|AEB09209.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 151

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 26  VNEVISRYPPSRCQSA-VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           +N ++SRY    CQ A +IP+L   Q+   ++ +  ++VVA  L++   R+  +ATFY  
Sbjct: 6   LNGILSRYD---CQPADLIPVLQDIQDSYNYLPQDEMKVVAERLNIPLTRIFSVATFYKM 62

Query: 85  FQLSPVGTRAHV-QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           F L+P G   H+ +VC  T C L+G ++L E   +++     +   D   + E V C G+
Sbjct: 63  FSLTPKG--KHICRVCLGTTCHLKGGQRLAESISHRLGVDIGYTTKDMRFTLETVGCLGS 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP++MI    +  +T +++ +I+  +
Sbjct: 121 CAQAPVMMIDDTYHARVTVDKVPKILKKY 149


>gi|330810466|ref|YP_004354928.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378574|gb|AEA69924.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 165

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 164


>gi|218961953|ref|YP_001741728.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma (hymA-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730610|emb|CAO81522.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma (hymA-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 158

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++++++   +   ++IPLL   Q++ G++SR  ++ +A+ +++    +  +ATFY+ F
Sbjct: 8   LDKILAKFQDKK--GSLIPLLQEVQKERGYLSRETMQYLADKMEIPSAEIFGVATFYSMF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGA 143
           +L P G +  ++VC  T C +   +  I+    +I Q P   N  SD   +  EV C G 
Sbjct: 66  RLKPQG-KHLIRVCKGTACHVSDVDS-IKNAIIEILQLPEGENTTSDMQFTVMEVACLGC 123

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           C  AP++MI   TY  L PE +  I++ +  G  +
Sbjct: 124 CSLAPVIMIDGKTYGKLVPEAIPAILNQYKNGDSE 158


>gi|225175929|ref|ZP_03729921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168517|gb|EEG77319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 166

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQ+  G++  + +  +A  LD++  ++  + TFY+QF L P G R  ++VC  
Sbjct: 36  LITVLQQAQDIYGFLPESVLLRIAEALDLSMAKIYGVVTFYSQFHLKPRG-RNVIRVCQG 94

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG  ++++  + ++       + D   + E V C GAC  AP++MI  DT+  LT
Sbjct: 95  TACHVRGVGRIMDKIKEELGIAEGETSEDLRFTLESVACIGACGLAPVIMINNDTHGRLT 154

Query: 162 PERLEEIIDAF 172
            +R++ I+  +
Sbjct: 155 ADRVKLILPLY 165


>gi|82702145|ref|YP_411711.1| NADH-quinone oxidoreductase, E subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410210|gb|ABB74319.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
          Length = 168

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
            YP +R  +  I  L   Q+  GWVS   I  VA  L M    +  +ATFY      PVG
Sbjct: 16  HYPNNR--AVCIEALKIVQQHRGWVSNEGIADVAEALQMKPAELESVATFYNMIFRKPVG 73

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +C +  C + G E+L +   +++  +P    +DG  +     C GAC +AP++M
Sbjct: 74  KHV-ILLCDSVSCWIMGYERLRQHLGDRLGIRPGQTTADGRFTLLPNVCLGACDHAPVMM 132

Query: 152 IGKDTYEDLTPERLEEIIDAF 172
           +    Y+DL P R+++I+ ++
Sbjct: 133 VDDAHYQDLDPARIDQILASY 153


>gi|306814604|ref|ZP_07448766.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
 gi|305851998|gb|EFM52450.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
          Length = 166

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHA 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 HLTPEAIPELLERY 165


>gi|150007690|ref|YP_001302433.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013605|ref|ZP_05285731.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|256839951|ref|ZP_05545460.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
 gi|262381801|ref|ZP_06074939.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|298375636|ref|ZP_06985593.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
 gi|301310273|ref|ZP_07216212.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
 gi|149936114|gb|ABR42811.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|256738881|gb|EEU52206.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
 gi|262296978|gb|EEY84908.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|298268136|gb|EFI09792.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
 gi|300831847|gb|EFK62478.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
          Length = 162

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++     +V+A  L++   RV  + TFY+ F ++P G +  + VC  
Sbjct: 28  LINILHAAQGLFGYLPPEVQQVIAAELNIPVSRVYGVVTFYSFFTMTPKG-KYPISVCLG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E ++E  + ++  K      DG  S + + C GAC  AP+VMIG   Y  +T
Sbjct: 87  TACYVRGAENVLEEMQRQLEIKVGETTPDGLFSLDCLRCVGACGLAPVVMIGGKVYGRVT 146

Query: 162 PERLEEIIDAF 172
           PE++ +I+  +
Sbjct: 147 PEKVRDILSDY 157


>gi|126666307|ref|ZP_01737286.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
 gi|126629108|gb|EAZ99726.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
          Length = 174

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+A I  L   Q++ GWV   AI  +A  L +    V  +ATFY+     PVG R  + +
Sbjct: 41  QAACIEALKIVQKRHGWVPDGAIVAIAETLGVGAGAVEGVATFYSLIFRQPVG-RHVILL 99

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C ++ C L G E L EV   ++         DG  +   V C GAC   P +MIG DT+ 
Sbjct: 100 CDSSSCFLTGYEALSEVLSERLGIGFGQTTGDGRFTLLPVCCLGACDRGPAMMIGDDTFG 159

Query: 159 DLTPERLEEIIDAF 172
            +  + L+E+++A+
Sbjct: 160 PIEADDLDELLEAY 173


>gi|323704273|ref|ZP_08115852.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536339|gb|EGB26111.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 160

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS+E+   + +VI +   +    ++I ++  AQE  G++     + ++  +++    +  
Sbjct: 8   FSQENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           IATFY++F L P G +  + VC  T C ++G   +++  + K+         DG  S E 
Sbjct: 66  IATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEA 124

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++MI  + +  LTP+ +E+I+  F
Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159


>gi|237800541|ref|ZP_04589002.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023401|gb|EGI03458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 165

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +  +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + E+++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAEMLEGY 164


>gi|254166690|ref|ZP_04873544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289596481|ref|YP_003483177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
           boonei T469]
 gi|197624300|gb|EDY36861.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289534268|gb|ADD08615.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
           boonei T469]
          Length = 149

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V ++I+++      S ++ +L   Q++ G++   AI+ +A  L M    V + A+FY+ F
Sbjct: 5   VLQIINKHKNK--DSKLLAILHDVQDEFGYIPEEAIKTIAKELGMKKGEVYDAASFYSFF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G +  V +C    C ++G E++IE    +   K      DG  +++ VE  G C 
Sbjct: 63  RFKPEG-KHEVMICDCIVCHIKGSERIIERIEKEFGVKMGETTKDGKFTFKIVEGLGHCE 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
           ++P++MI    Y DLTP+++ EI+
Sbjct: 122 HSPVMMIDGKIYGDLTPDKVVEIL 145


>gi|169830326|ref|YP_001716308.1| hypothetical protein Daud_0108 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637170|gb|ACA58676.1| Protein of unknown function DUF166 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 377

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +  E+    +    S Y   R  S ++P+L  AQE  G++   A+  +A  L +    V 
Sbjct: 225 ALKEDIEAGLKSAFSFYKGHR--SELVPILQDAQEVFGYLPETAMLEIARFLRLPESHVY 282

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFY QF     G R  ++VC  T C ++G ++++E    ++         D   S E
Sbjct: 283 GVATFYDQFHFIRRG-RNQIKVCCGTACHVKGADRVLEEFERQLGVGHGETTPDYEYSLE 341

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            V C GAC  AP+V++GK+ Y  +TP R   ++
Sbjct: 342 RVACVGACALAPVVVMGKEVYGQMTPGRARSVL 374


>gi|150020390|ref|YP_001305744.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149792911|gb|ABR30359.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 157

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ ++   +    +I +L+  Q++   + +  +  ++  LD+   ++  +ATFY QF
Sbjct: 8   VEEILEKHNYEK--KNLIKILLDVQKEYRHIPKEVVNYISVALDIPPAKIFGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    + +C  T C + G   L++    ++  KP     D   S ++V C GAC 
Sbjct: 66  SLKPKGEYT-ILICDGTACHMEGSMGLVKAIEEELGIKPGEVTQDLKFSLDKVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            AP ++I  + Y  LTPE+ +EI+     G
Sbjct: 125 LAPAMVINGEVYGKLTPEKTKEILRKLKEG 154


>gi|300853891|ref|YP_003778875.1| NADH dehydrogenase I subunit E [Clostridium ljungdahlii DSM 13528]
 gi|300434006|gb|ADK13773.1| NADH dehydrogenase I, E subunit [Clostridium ljungdahlii DSM 13528]
          Length = 161

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           +VI +YP    Q   + +L   Q +  ++ R A+E +A  LD    R+  +ATFY    L
Sbjct: 14  DVIEKYPKE--QRFTLAILQDIQRKYKYIPREALENLAKYLDTPVSRLYGMATFYKALSL 71

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           +P G    + VC  T C + G   +++     I  KP     D   S   V C G C  A
Sbjct: 72  TPKGENI-ITVCDGTACHVAGSMVVMDELEKAIGIKPGETTEDLKFSINTVNCIGCCAIA 130

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++MI    Y +LTP+ +EEI+  +
Sbjct: 131 PVMMINDKYYGNLTPKLVEEILSEY 155


>gi|50121948|ref|YP_051115.1| NADH dehydrogenase subunit E [Pectobacterium atrosepticum SCRI1043]
 gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase chain E [Pectobacterium atrosepticum
           SCRI1043]
          Length = 181

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 12  QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           QP++ S ++E+A  +++         ++     ++A I  L   Q+  GWV   AI  +A
Sbjct: 15  QPAADSLTKENAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKARGWVPDGAINAIA 74

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP 
Sbjct: 75  DLLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERKLSIKPG 133

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               DG  +     C G C   P +MI  DT+  +TPE +E +++ +
Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQY 180


>gi|91200212|emb|CAJ73256.1| strongly similar to to proton-translocating NADH dehydrogenase I,
           24 kDa subunit (NuoE) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 156

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+ G++   A+E V+   D+   R+  + TFY+QF L P G    V++C  
Sbjct: 27  LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSLVPRGKHT-VRLCAG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G   + E   + +  K      D   + + V C G C  AP++MI    Y  LT
Sbjct: 86  TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 145

Query: 162 PERLEEIIDAF 172
            E+ EEI+ ++
Sbjct: 146 EEKTEEILKSY 156


>gi|289523837|ref|ZP_06440691.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502927|gb|EFD24091.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 163

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S  S   + +++ RY  +     ++ LL+  QE+  +V   A+  +A   D+   RV  
Sbjct: 2   LSATSKEAIEDLLYRYEKN--PRFLLQLLLDVQERFRYVPTEAMRSIARYFDIPESRVFA 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY    L P G +  ++VC  T C LRG ++++     K+         DG  + E 
Sbjct: 60  VATFYKVLSLVPKGEKT-IKVCQGTACHLRGGKQVLSAIGEKLGIAAGETTEDGIFTLET 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           V C G C  AP++M+G   Y  LT + +  I++A
Sbjct: 119 VNCLGCCAMAPVMMVGDKVYGKLTVDDVSRILEA 152


>gi|78221379|ref|YP_383126.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
 gi|78192634|gb|ABB30401.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
          Length = 173

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L +  ++V E+ATFY      PVG R  V V
Sbjct: 21  REAAVDVIKELQRHYGWLTDEAVAEAAGLLGLTPLQVEELATFYEMIYRRPVGKRV-VHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E L+     K+  +P    +DG  +     C G C  AP +MIG   Y 
Sbjct: 80  CDSISCWAMGGESLMAHLAAKLGVEPGGTTADGMFTLLPCCCLGNCGEAPTLMIGDTLYG 139

Query: 159 DLTPERLEEII 169
            +TPER EEI+
Sbjct: 140 RVTPERGEEIL 150


>gi|94676865|ref|YP_588822.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94220015|gb|ABF14174.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 167

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  + E    + +  ++Y  +R  S  I  L   Q+Q GWV  +AI+ +AN L ++  
Sbjct: 11  TNFKLNPELYQAIQQEKNKYEDARAVS--IEALKMVQKQYGWVPDSAIQAIANTLGISGS 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY+     PVG R  ++ C +  C + G + +     N ++ KP     DG  
Sbjct: 69  DVEEVATFYSNIFRQPVG-RHVIRYCNSVVCYITGYQTIQTKLENCLNIKPGKTTPDGRF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI  DTY  LT E + ++++ +
Sbjct: 128 TLLPTCCLGNCDKGPTMMINDDTYVHLTAENICQLLELY 166


>gi|237732316|ref|ZP_04562797.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
 gi|226907855|gb|EEH93773.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
          Length = 166

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHA 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 HLTPEGIPELLERY 165


>gi|293395173|ref|ZP_06639459.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
 gi|291422350|gb|EFE95593.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
          Length = 183

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S E    +      Y   R  +A I  L   Q++ GWV   AI  +A++L +    
Sbjct: 28  AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASD 85

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG  +
Sbjct: 86  VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTGDGRFT 144

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIENLLEQY 182


>gi|157144784|ref|YP_001452103.1| NADH dehydrogenase subunit E [Citrobacter koseri ATCC BAA-895]
 gi|157081989|gb|ABV11667.1| hypothetical protein CKO_00511 [Citrobacter koseri ATCC BAA-895]
          Length = 166

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 HLTPEAIPELLERY 165


>gi|93005406|ref|YP_579843.1| NADH dehydrogenase subunit E [Psychrobacter cryohalolentis K5]
 gi|92393084|gb|ABE74359.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter
           cryohalolentis K5]
          Length = 169

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    ++E +  YP  R  +A +  L   Q++ GWV  A +  +ANIL++    +  
Sbjct: 17  LTAEEIAAIHEFMHHYPHPR--AASLDSLKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L    ++++        +DG  +   
Sbjct: 75  VATFFNRIYRQPVG-RHVILVCDSVACYLTGYEALAAELKSQLGINYGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C   P V+I +DTY  + PE + ++++ ++
Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQPEEVAQLLELYA 169


>gi|150021054|ref|YP_001306408.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149793575|gb|ABR31023.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 160

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 26  VNEVISRYPPSRCQSA--VIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           + ++IS     R +    +I  L + Q+  +  ++S  A ++V+  L++   +V E+ TF
Sbjct: 5   IKDIISEAKNERLEEKDILIYTLHKIQDISENNFISEEAAKIVSEELNIPLSKVYEVLTF 64

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ F     G +  ++VC + PC +    ++I++ + ++        +DG  + EE  C 
Sbjct: 65  YSMFSTKKRG-KYLIRVCSSLPCHVANGREIIKILKEELKIDFNQTTADGMFTLEETGCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           G C  +P++MI    Y DLTPE+++E+I+    G+
Sbjct: 124 GLCGVSPVIMINNKYYGDLTPEKVKELINKIKRGE 158


>gi|229591256|ref|YP_002873375.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens SBW25]
 gi|312961689|ref|ZP_07776187.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
 gi|229363122|emb|CAY50141.1| NADH dehydrogenase I chain E [Pseudomonas fluorescens SBW25]
 gi|311283948|gb|EFQ62531.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
          Length = 165

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+         D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNKLGIGLGQTTPD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTQLLEGY 164


>gi|283832285|ref|ZP_06352026.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
           29220]
 gi|291071929|gb|EFE10038.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
           29220]
          Length = 166

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI  DT+ 
Sbjct: 92  CDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDDDTHA 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 HLTPEGIPELLERY 165


>gi|311278758|ref|YP_003940989.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
 gi|308747953|gb|ADO47705.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
          Length = 166

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQSAIEQKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + ++++ +
Sbjct: 152 HLTPEAIPDLLEQY 165


>gi|237809383|ref|YP_002893823.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
 gi|237501644|gb|ACQ94237.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
          Length = 166

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           ++Q   F+ S      +   +  Y   R  +A I  L   Q++ GWV   AI  +A++L 
Sbjct: 6   QYQNEPFALSASELAAIQHEMHHYEDPR--AATIEALKLVQKERGWVPDGAIYAIADVLG 63

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +    V  +ATFY+Q    PVG R  ++ C +  C + G + + +    K+  +P    +
Sbjct: 64  IPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCFINGYQTIQQALEEKLGIRPGQTTA 122

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           D   +   V C G C   P +MI  DT+  L+ + L+E+++ +
Sbjct: 123 DNRFTLLPVCCLGNCDKGPSMMIDDDTHSHLSVDNLDELLEQY 165


>gi|332799829|ref|YP_004461328.1| NADH-quinone oxidoreductase subunit E [Tepidanaerobacter sp. Re1]
 gi|332697564|gb|AEE92021.1| NADH-quinone oxidoreductase, E subunit [Tepidanaerobacter sp. Re1]
          Length = 162

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E++ +Y   +    ++  L  AQ   G++     E+VA  LD+    V    TFY+ F
Sbjct: 18  IEEMLKKYKGQK--GTLLQALQEAQNIMGYLPIEVQEMVAETLDITLSEVYSTITFYSFF 75

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  ++ C  T C +RG EK+++  + ++  +      DG  S     C GAC 
Sbjct: 76  SLKPKG-KYQIRTCLGTACYVRGAEKVLDRLKTELGIEVGDTTDDGKFSLNACRCIGACG 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP ++I  + Y  LTP+++ +I+  F
Sbjct: 135 LAPAIIINDEVYGRLTPDKIPDILKKF 161


>gi|251773163|gb|EES53716.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 176

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+ +L   Q++ G+V    +E V   L + + ++  + TFY+QF   P G +  ++V
Sbjct: 28  EGAVVQILQTIQDKYGYVPAEVLERVGEDLGIPHSKMFGVLTFYSQFYREPRG-KFILKV 86

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   L++  +  +H +      D   + E V C G+C  APM M+  +TY 
Sbjct: 87  CVGTACHVRGAGLLVDKIKENLHIEEGENTEDMMFTLEPVSCLGSCALAPMAMVNGNTYG 146

Query: 159 DLTPERLEEIIDAF---STGQGDT 179
            L+ +++ +++  F   S G+ +T
Sbjct: 147 KLSGDKMVDLLKQFREESAGEPET 170


>gi|257463176|ref|ZP_05627576.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060767|ref|ZP_07925252.1| NADH dehydrogenase [Fusobacterium sp. D12]
 gi|313686443|gb|EFS23278.1| NADH dehydrogenase [Fusobacterium sp. D12]
          Length = 160

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP+L +AQE  G++     + +A  +++   R+  I TFY  F  +P G +  + V
Sbjct: 23  EMAIIPILHKAQEIFGYLPEEVQQFIAEKMEIPIGRIYGIVTFYNFFSTNPKG-KHQISV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K+++  + ++         DG  S + + C GAC  AP++MI  D + 
Sbjct: 82  CTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGACGLAPVMMIDSDVHG 141

Query: 159 DLTPERLEEIIDAF 172
            L  E++ EI+  +
Sbjct: 142 KLEKEQVAEILSFY 155


>gi|152971213|ref|YP_001336322.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579544|ref|YP_002237327.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
 gi|238895802|ref|YP_002920538.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae NTUH-K2044]
 gi|262043325|ref|ZP_06016454.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934257|ref|YP_003438316.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
 gi|290508460|ref|ZP_06547831.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
 gi|330003559|ref|ZP_08304674.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
 gi|150956062|gb|ABR78092.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206568602|gb|ACI10378.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
 gi|238548120|dbj|BAH64471.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039349|gb|EEW40491.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888986|gb|ADC57304.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
 gi|289777854|gb|EFD85851.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
 gi|328536899|gb|EGF63198.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
          Length = 166

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQAAIEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + ++++ +
Sbjct: 152 HLTPEAIPDLLEQY 165


>gi|292492185|ref|YP_003527624.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
 gi|291580780|gb|ADE15237.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
          Length = 155

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+E    +     +YP    Q+A +  L   Q + GWVS   +  VA IL M+   +  
Sbjct: 3   LSDEERKEIETEFKQYPQK--QAASVEALKIVQRRHGWVSDPHLREVAQILGMSAEELDG 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG  A + +C +  C + G ++L +  +N++       + DG  +   
Sbjct: 61  VATFYNLIFRRPVGRHA-ILLCNSVSCWIMGYDRLYQHLQNRLGIGLGETSKDGRFTLLP 119

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C G C +AP++M+ +D + DL PE+++EI+  +
Sbjct: 120 TCCLGDCNHAPVMMVDEDLHRDLAPEKVDEILGRY 154


>gi|255994341|ref|ZP_05427476.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
 gi|255993054|gb|EEU03143.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
          Length = 163

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++S Y     + ++I +L + Q+  G++    I+ ++    +   ++  +ATFY+QF
Sbjct: 12  IDNILSEYADK--EGSLITILQKTQDAYGYLPMDVIDYISEKTGIRAAKIYGVATFYSQF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L P+G +  + +C  T C + G + + EV    ++ K      DG  +   V C G C 
Sbjct: 70  RLKPIG-KYLIMLCQGTACHVNGSDSVREVVSEHLNIKDGETTEDGVFTLNNVACLGCCS 128

Query: 146 NAPMVMI----GKDTYEDLTPERLEEIID 170
            AP++M+    G++TY  LT +++ +++D
Sbjct: 129 IAPVMMVQTVEGEETYGQLTKDKVIKLLD 157


>gi|271501265|ref|YP_003334290.1| NADH-quinone oxidoreductase subunit E [Dickeya dadantii Ech586]
 gi|270344820|gb|ACZ77585.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech586]
          Length = 176

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S+     +      Y  +R  +A I  L   Q+Q GWV   AI  +A++L +    V
Sbjct: 22  FVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAINAIADVLGIPASDV 79

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG  + 
Sbjct: 80  EGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTL 138

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI +DT+  L P+ L+ +++ +
Sbjct: 139 LPTCCLGNCDKGPTMMIDEDTHSQLKPDDLDSLLEQY 175


>gi|297587237|ref|ZP_06945882.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
 gi|297575218|gb|EFH93937.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
          Length = 161

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L RAQ++ G++ +  I +++ ILD+    +  + TFY QF L P G +  +QVC  
Sbjct: 31  LMPVLQRAQDEFGYLPKEIITMISKILDIPLSEIYGVITFYAQFSLIPKG-KYDIQVCEG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G +++ E  +  +         D   S     C G C  AP+++I  D Y  + 
Sbjct: 90  TACYVKGAQRVSEKLQEILKIPAGSTTEDQKFSITPCRCVGLCALAPVIVINGDVYGKVA 149

Query: 162 PERLEEIIDAFS 173
              LE II  ++
Sbjct: 150 VNELESIISKYN 161


>gi|223558017|gb|ACM91023.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 161

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E++ + + ++ + Y  +     +I +L + Q   G++     +VVA+ L +   RV  +
Sbjct: 9   TEDNYLKIKDICASY--NNNPGELINVLHKTQGTFGYLPEEVQQVVADCLGIPVGRVYGV 66

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY+ F + P G  A + VC  T C ++G EK+++  ++++         DG  S + +
Sbjct: 67  VSFYSFFTMKPKGKYA-ISVCLGTACYVKGAEKILDALKSELKISEGGVTEDGKFSLDVL 125

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP++ I   TY  L PE ++EI+  ++
Sbjct: 126 RCVGACGLAPVMTINGKTYGRLVPEHVKEILAEYA 160


>gi|146312471|ref|YP_001177545.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
 gi|145319347|gb|ABP61494.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
          Length = 166

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A +L + 
Sbjct: 8   QTEAFELSAAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLDIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C   P +MI +DT+  LTPE + ++++ +
Sbjct: 125 RFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIPDLLEQY 165


>gi|319789710|ref|YP_004151343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
           ammonificans HB-1]
 gi|317114212|gb|ADU96702.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
           ammonificans HB-1]
          Length = 160

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 26  VNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           V E++S  RYP  +  S  +P L  A++    +    + ++A+ L++  + V E A FY 
Sbjct: 10  VKELVSSGRYPSKK--SCTLPALWIAEKNFPRIDHEIMRIIASELEIPLVEVEEAAEFYA 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G +  ++VC    CML G E+++E     +   P     DG  + EE EC G 
Sbjct: 68  MFHTKPKG-KYVIRVCTNLSCMLNGAEEIVEELSRLLGISPGETTPDGLFTLEEYECMGL 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP + + ++ + ++T E+L  I++ F
Sbjct: 127 CDGAPALTVNEERFLNVTKEQLPAILEKF 155


>gi|284042619|ref|YP_003392959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
           DSM 14684]
 gi|283946840|gb|ADB49584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
           DSM 14684]
          Length = 212

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P++     E    +   +++YP  R  SA IP L  AQ+  GW S  AIE VA ++ + 
Sbjct: 35  DPATTPVPAELRTQIEAAMAKYPNFR--SAAIPALHAAQDLHGWCSPEAIEQVACVMRLT 92

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFY  F++ PVG R  V VC    C LRG + ++   ++           D 
Sbjct: 93  PGYLTAVATFYDMFEMKPVG-RHRVYVCTNISCSLRGADSVLAAVQDAA-------GDDA 144

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
             +    EC GAC  APM  +  +    L     E+++     G+   + P  Q+ R + 
Sbjct: 145 DFNVRPFECLGACDIAPMASVNGEFVGPLDLADAEQLVADLREGR--EVLPAKQLSRRAC 202

Query: 192 APAGG 196
           A  G 
Sbjct: 203 ADPGA 207


>gi|227326164|ref|ZP_03830188.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 181

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 12  QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           QP++ S ++++A  +++         ++     ++A I  L   Q++ GWV   AI  +A
Sbjct: 15  QPAADSLTKDNAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKERGWVPDGAIHAIA 74

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP 
Sbjct: 75  DLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               DG  +     C G C   P +MI +DT+  +TPE +E +++ +
Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQY 180


>gi|288572801|ref|ZP_06391158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568542|gb|EFC90099.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 163

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 18  FSEESAIWVNEVISRYPP--SRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            S  + +  NE+  R  P   R Q      IPLL   Q++ G+V+  A+  V+  +D++ 
Sbjct: 1   MSSTTTVSSNELTQRLDPIVQRYQGKKGITIPLLADIQKEYGYVAEEAVTYVSRKMDISA 60

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  +ATFY  F+L P G    +++C  T C ++G   + E     +  +      DG 
Sbjct: 61  SEMFGVATFYAMFRLQPEGKYV-IRICRGTACHVQGSASVAEEVARHLGIEEGETTEDGI 119

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            + + V C G C  AP++M+G + +  LTP +  EI++ +
Sbjct: 120 FTLQHVACLGCCSLAPVMMVGDNVHGLLTPPKSIEILEDY 159


>gi|329296022|ref|ZP_08253358.1| NADH-quinone oxidoreductase subunit E [Plautia stali symbiont]
          Length = 171

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +++A +   P+  F  SE     +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQKIAIQTIDPTEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q   +PVG    ++ C +  C + G + +       
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIYRTPVGCHV-IRYCDSVVCHITGYQGIQAALEQN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP     DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIANLLEQY 170


>gi|293371346|ref|ZP_06617783.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|298481912|ref|ZP_07000101.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
 gi|315919437|ref|ZP_07915677.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|292633706|gb|EFF52261.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|298271776|gb|EFI13348.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
 gi|313693312|gb|EFS30147.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 158

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ  +G++      ++A+ L +   +V  + TFYT F ++P G +  + VC  
Sbjct: 28  LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 147 PVDVKKIIE 155


>gi|237715805|ref|ZP_04546286.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407420|ref|ZP_06083968.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|294646921|ref|ZP_06724542.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294810788|ref|ZP_06769434.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229443452|gb|EEO49243.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354228|gb|EEZ03320.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|292637866|gb|EFF56263.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294441976|gb|EFG10797.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 158

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ  +G++      ++A+ L +   +V  + TFYT F ++P G +  + VC  
Sbjct: 28  LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 147 PVDVKKIIE 155


>gi|225175129|ref|ZP_03729125.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169305|gb|EEG78103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 171

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    V+E+++    +R    +IP+L   QE+ G++ R A+E VA+ + MA + V  +A
Sbjct: 9   EEILNSVDEILTSSEINR--RNLIPILQSIQERLGYLPRPALEKVADAMGMAAVDVYGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF+  P G    ++VC  T C + G +  ++    +++        D     E V 
Sbjct: 67  TFYNQFRFHPPGEH-QIKVCMGTACYIVGGQIAMDSFARRLNISEGETTPDRKYGLERVA 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C G C  AP+V++ +     +TP R++ I+ +     G+  +PG
Sbjct: 126 CVGCCTMAPVVVVDEQMEGSVTPTRVDGILLSLEA-NGNGEKPG 168


>gi|160887579|ref|ZP_02068582.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
 gi|260171117|ref|ZP_05757529.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|156107990|gb|EDO09735.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
 gi|295087524|emb|CBK69047.1| NADH dehydrogenase subunit E [Bacteroides xylanisolvens XB1A]
          Length = 162

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ  +G++      ++A+ L +   +V  + TFYT F ++P G +  + VC  
Sbjct: 32  LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 90

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 91  TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 150

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 151 PVDVKKIIE 159


>gi|281358698|ref|ZP_06245175.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281314824|gb|EFA98860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 170

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           VN+++ +Y  S  +S +IP+L   Q    ++S+  I  VA  + +   RV  +ATFY  F
Sbjct: 18  VNKILEKYDYS--ESKLIPILQEVQAVYKYLSKDMISYVATSIGVPPSRVYGVATFYAHF 75

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144
            + P G +  +++C  T C ++    ++     K+      R SD  L + E V C GAC
Sbjct: 76  SMQPKG-KYIIKLCDGTACHVKKSHGILNALYEKLKLSGDKRTSDDQLFTIETVSCLGAC 134

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170
             AP++++ ++ Y   TPE+  EI+D
Sbjct: 135 GLAPVMVVNEEVYGQCTPEKAIEIVD 160


>gi|302389264|ref|YP_003825085.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Thermosediminibacter oceani DSM
           16646]
 gi|302199892|gb|ADL07462.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Thermosediminibacter oceani DSM
           16646]
          Length = 162

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E++ +Y   +    ++ +L  AQ   G++       VA  LD+    V    TFY+ F
Sbjct: 18  VDEMLKKYKGQK--GVLLQVLQEAQRIVGYLPLEVQIRVAEALDVTLSEVYSTITFYSFF 75

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  ++VC  T C ++G +K++     ++  K      D   S E   C GAC 
Sbjct: 76  NLKPRG-KYQIRVCLGTACYVKGADKVLNRIEQELKIKVGETTEDLKFSLEACRCVGACG 134

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+VMI  D Y  LTP+R+ EI+  +
Sbjct: 135 LAPVVMINDDVYGRLTPDRVPEILKNY 161


>gi|149374624|ref|ZP_01892398.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
           DG893]
 gi|149361327|gb|EDM49777.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
           DG893]
          Length = 171

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+A I  L   Q + GWV   AI  +A +L +    V  +ATFY+     PVG R  V V
Sbjct: 38  QAACIEALKVVQRRHGWVPDGAIGAIAKVLGIGPASVEGVATFYSLIFRQPVG-RHVVLV 96

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C ++ C L G ++L +   + +         DG  +   V C GAC  AP +MI  DTY 
Sbjct: 97  CDSSSCFLSGFDELKQALASHLGIDYGQTTEDGRFTLLPVCCLGACDGAPALMIDNDTYG 156

Query: 159 DLTPERLEEIIDAF 172
            ++P+ L  +++ +
Sbjct: 157 PVSPDDLPGLLEGY 170


>gi|251789017|ref|YP_003003738.1| NADH-quinone oxidoreductase subunit E [Dickeya zeae Ech1591]
 gi|247537638|gb|ACT06259.1| NADH-quinone oxidoreductase, E subunit [Dickeya zeae Ech1591]
          Length = 176

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI+ +A IL +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 43  RAASIEALKIVQKQRGWVPDGAIDAIAEILGIPASDVEGVATFYSQIYRQPVG-RHVIRY 101

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +M+ +DT+ 
Sbjct: 102 CDSVVCHITGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMVDEDTHS 161

Query: 159 DLTPERLEEIIDAF 172
            L P+ L+ +++ +
Sbjct: 162 QLKPDDLDSLLEQY 175


>gi|304398213|ref|ZP_07380087.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
 gi|304354079|gb|EFM18452.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
          Length = 171

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      +
Sbjct: 59  AINAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPSLLEQY 170


>gi|237722432|ref|ZP_04552913.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
 gi|229448242|gb|EEO54033.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
          Length = 158

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A+ L++   +V  + TFYT F ++P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRIIASKLNIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 147 PIDVKKIIE 155


>gi|89073314|ref|ZP_01159844.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
           SKA34]
 gi|89051024|gb|EAR56488.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
           SKA34]
          Length = 188

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++    + E I+ YP  R  +  I  L   Q++ G++++ ++ +V+ + D++  ++ E
Sbjct: 2   LTDQERAHLEEHIAHYPEKR--AGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT  +  PVG R  ++VC +  C  RG +K++E   N   +      +DG+++   
Sbjct: 60  LITFYTLLRRRPVG-RNIMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118

Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173
             C G C  AP  +I  D  E +LTPER+  I+   +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELA 155


>gi|253583177|ref|ZP_04860375.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833749|gb|EES62312.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 170

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +SA+I +L +AQE  G++     E +A  L++   +V  + +FY  F + P G +  + V
Sbjct: 29  KSALIIVLHKAQEIFGYIPAEVQEFIAEELEIPVAKVYGVVSFYNFFSMEPKG-KYQISV 87

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  K++E    +++        DG  S + + C GAC  AP+V++GK+ + 
Sbjct: 88  CTGTACYVRGAGKVLENLEKELNIGVGGVTKDGLFSLDCLRCVGACGLAPVVIVGKEVHG 147

Query: 159 DLTPERLEEIIDAF 172
            + P  ++++I+ +
Sbjct: 148 KVKPTDIKKLIETY 161


>gi|158319964|ref|YP_001512471.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158140163|gb|ABW18475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 166

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP L + Q   G++   A+ +V+  LD+   ++  +A+FY+ F L P G    + V
Sbjct: 32  EGALIPALHKIQSIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQHV-ISV 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G + ++E   ++++ +  +   DG  + +   C GAC  AP++MI +  Y 
Sbjct: 91  CLGTACYVKGSQNILERLSSELNIQEGNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYG 150

Query: 159 DLTPERLEEIIDAFS 173
            LTP  + +I+  ++
Sbjct: 151 RLTPSDVPKILSEYT 165


>gi|330958156|gb|EGH58416.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 165

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDMLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|71733608|ref|YP_275282.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257485442|ref|ZP_05639483.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625429|ref|ZP_06458383.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649288|ref|ZP_06480631.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679199|ref|ZP_06500089.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487551|ref|ZP_07005593.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185026|ref|ZP_07261699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           642]
 gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157935|gb|EFH99013.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323791|gb|EFW79875.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327930|gb|EFW83935.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866835|gb|EGH01544.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330881186|gb|EGH15335.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889657|gb|EGH22318.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. mori str.
           301020]
 gi|330900628|gb|EGH32047.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330987945|gb|EGH86048.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010724|gb|EGH90780.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 165

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|153807871|ref|ZP_01960539.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
 gi|149129480|gb|EDM20694.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
          Length = 158

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ  +G++      ++A+ L +   +V  + TFYT F ++P G +  + VC  
Sbjct: 28  LINILHEAQHLQGYLPEEIQRIIASKLGIPVSKVYGVVTFYTFFTMTPKG-KHPISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 147 PVDVKKIIE 155


>gi|118579071|ref|YP_900321.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118580050|ref|YP_901300.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118581590|ref|YP_902840.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118501781|gb|ABK98263.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
           2379]
 gi|118502760|gb|ABK99242.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
           2379]
 gi|118504300|gb|ABL00783.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
          Length = 154

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           + YP     S V+P L    +++  +  +    +AN L +  ++V E  T+YT F   PV
Sbjct: 13  ATYPKELNSSLVMPFLRIMLDEKKSLGESDAVFIANYLGLPAMQVKEALTWYTMFYRHPV 72

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT   ++VC    C L G E++I+    K+  KP    +DG  +   VEC  +C  AP++
Sbjct: 73  GTHV-IKVCRNIACSLMGAERIIDHLSQKLGIKPGETTADGRFTLLLVECLASCGTAPVM 131

Query: 151 MIGKDTYEDLTPERLEEIIDAFS 173
            I    +E LT  ++++I+   S
Sbjct: 132 QIDDTYHEQLTEAKIDQILKGLS 154


>gi|310768162|gb|ADP13112.1| NADH dehydrogenase subunit E [Erwinia sp. Ejp617]
          Length = 171

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLGIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170


>gi|258513532|ref|YP_003189754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777237|gb|ACV61131.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 165

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           S+ SA  +++V     PS  +S  +I +L R QE  G++ R     VA  L++    V  
Sbjct: 9   SQLSAELLSQVDKIIEPSSGRSGNLIQVLHRVQELVGYLPREVQVRVAEGLNVPLSIVYG 68

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY+ F + P G    + VC  T C +RG ++LI   ++++  K     SDG  S   
Sbjct: 69  VVSFYSFFNVLPKGKHT-INVCTGTACYVRGAKQLINNIQDQLDIKTGGTTSDGQFSLGM 127

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           V C GAC   P+V I +D +  + PE+++ I+  +S
Sbjct: 128 VRCVGACGLGPVVTINEDVHAQVRPEKIDGILAKYS 163


>gi|225572037|ref|ZP_03780901.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040472|gb|EEG50718.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
           10507]
          Length = 164

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +FS +EE    + +VI      +   A++P+L +AQ+  G++ +  ++++++   +   +
Sbjct: 9   AFSGTEEQEEALRKVIEEMKEEK--GALMPILQKAQDIYGYLPKEVMKIISDETQIPMEK 66

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFY+QF L+P G +  + VC  T C ++G   +      K+         DG  S
Sbjct: 67  IYGVATFYSQFTLNPKG-KYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFS 125

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +   C GAC  AP++MI  + Y  LT + +++I+  +
Sbjct: 126 LDACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163


>gi|90579192|ref|ZP_01235002.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
 gi|90440025|gb|EAS65206.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
          Length = 188

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++    + E I+ YP  R  +  I  L   Q++ G++++ ++ +V+ + D++  ++ E
Sbjct: 2   LTDQERAHLEEHIAHYPEKR--AGAIYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT  +  PVG R  ++VC +  C  RG +K++E   N   +      +DG+++   
Sbjct: 60  LITFYTLLRRRPVG-RNVMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118

Query: 138 VECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173
             C G C  AP  +I  D  E +LTPER+  I+   +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELA 155


>gi|310827346|ref|YP_003959703.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
 gi|308739080|gb|ADO36740.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
          Length = 162

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++++S YP  R  S  + ++   Q    ++    ++ +A  LD     +  +ATFY   
Sbjct: 9   IDKILSAYPRDRRHS--LAMMQDMQHHFNYIPEQGMKALAEYLDCPLSSLYSMATFYRAL 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    +++C  T C +RG   LI   + ++   P   + DG  S E V C G+C 
Sbjct: 67  SLKPKGKHI-IKLCDGTACHIRGSVNLITGIKRELDISPGETSGDGLFSLETVNCLGSCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+++I    Y  +T E+L EI++ +
Sbjct: 126 LAPVMVIDGVYYGKVTLEKLPEILNQY 152


>gi|242239965|ref|YP_002988146.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
 gi|242132022|gb|ACS86324.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
          Length = 176

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 12  QPS--SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           QP+  +F  S+     +      Y  +R  +A I  L   Q+Q GWV   AI  +A++L 
Sbjct: 16  QPAGEAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAITAIADVLG 73

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     
Sbjct: 74  IPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPGQTTF 132

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           DG  +     C G C   P +M+ +DTY  L P+ L+ +++ +
Sbjct: 133 DGRFTLLPTCCLGNCDKGPSMMVDEDTYTRLKPDDLDSLLEQY 175


>gi|197117836|ref|YP_002138263.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087196|gb|ACH38467.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 152

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ +I ++     QS++I +L+  Q +  W+ + A++ V   LD+   R+  I TFY  F
Sbjct: 8   IDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKAF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G R  + VC  T C +RG +++++   + I  K    ++D   S E V C G C 
Sbjct: 66  SQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDADLKFSLETVNCLGCCA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P+++I  + + ++ P +  E++  +
Sbjct: 125 LGPVMVIDGEYHGNVAPAQSAEVLKNY 151


>gi|291618186|ref|YP_003520928.1| NuoE [Pantoea ananatis LMG 20103]
 gi|291153216|gb|ADD77800.1| NuoE [Pantoea ananatis LMG 20103]
 gi|327394579|dbj|BAK12001.1| NADH-quinone oxidoreductase chain E NuoE [Pantoea ananatis AJ13355]
          Length = 171

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       
Sbjct: 59  AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEEN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQY 170


>gi|157371542|ref|YP_001479531.1| NADH dehydrogenase subunit E [Serratia proteamaculans 568]
 gi|157323306|gb|ABV42403.1| NADH-quinone oxidoreductase, E subunit [Serratia proteamaculans
           568]
          Length = 183

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S E    +      Y   R  +A I  L   Q+Q GWV   AI  +A +L +    
Sbjct: 28  AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIAELLGIPASD 85

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP     DG  +
Sbjct: 86  VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRFT 144

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182


>gi|9719441|gb|AAF97801.1|AF281148_5 NADH dehydrogenase I subunit E [Pseudomonas fluorescens]
          Length = 166

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P   S +E SAI     +  Y   R  +A I  L   Q++ GWV   A+  +  IL + 
Sbjct: 10  RPFRLSETERSAI--EHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+        +DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTADG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +   V C G C  AP +MI  DT+ D+ P+ + ++++ +
Sbjct: 125 RFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 165


>gi|217077617|ref|YP_002335335.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217037472|gb|ACJ75994.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 162

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 39  QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           Q  +I +L + QE  +  ++   A EVV+  L +   ++ E+ TFY+ F     G    +
Sbjct: 22  QDILIYILHKIQEKIENNYIPEYAAEVVSEELKIPTSKIYEVLTFYSMFSTKKRGKYV-I 80

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC + PC +    ++I   + ++        SDG  + EE  C G C  +P++MI  + 
Sbjct: 81  RVCTSLPCHVANGREIINTLKEELKIDFNQTTSDGLFTLEESGCLGLCGVSPVIMINNEY 140

Query: 157 YEDLTPERLEEIIDAFSTGQ 176
           Y DLTP+++ EII+    G+
Sbjct: 141 YGDLTPQKVREIINNLKGGE 160


>gi|164687261|ref|ZP_02211289.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
           16795]
 gi|164603685|gb|EDQ97150.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
           16795]
          Length = 176

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 7/149 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E++  Y   +    +I +L +AQ+  G++S   +  ++    +   ++  +ATFY QF
Sbjct: 17  LDEILETYGKKK--GYLITILQKAQDAYGYISIDIMNRISEFTGIKVAKIYGVATFYAQF 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L P+G +  + +C  T C + G E + +V   +++ K      DG  +  +V C G C 
Sbjct: 75  RLQPIG-KYLIMLCQGTACHVNGSEMISQVISEQLNIKDGETTEDGLFTLNQVSCLGCCS 133

Query: 146 NAPMVMI----GKDTYEDLTPERLEEIID 170
            AP++MI      +TY +LT + + EI++
Sbjct: 134 LAPVMMIKTEDSDETYGNLTKDSVIEILN 162


>gi|157363817|ref|YP_001470584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
 gi|157314421|gb|ABV33520.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
          Length = 159

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ ++   +    +I +L+  Q+    +    +  +A  L++   ++  + TFY+QF
Sbjct: 8   VEEILKKHQYKK--ENLIRILLDVQKNYRHLPEDVVNYIAVALELPPAKIFGVGTFYSQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    + VC  T C + G   L++    +++ KP     D   S ++V C GAC 
Sbjct: 66  SLKPKGEYT-ILVCDGTACHMEGSLSLLKAIEEELNIKPGEVTRDLKFSVDQVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP ++I  + Y +LTPE++++II     G+
Sbjct: 125 LAPAMVINDEVYGNLTPEKVKDIIRKLKEGE 155


>gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum]
          Length = 137

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E       F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 38  LFVHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLDLAQRQHGWLPLTA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +  VA+ L M  +RV E+ATFYT F   PVG R HVQVC T
Sbjct: 98  MHYVADYLGMPRMRVYEVATFYTMFMRQPVG-RYHVQVCTT 137


>gi|259907930|ref|YP_002648286.1| NADH dehydrogenase subunit E [Erwinia pyrifoliae Ep1/96]
 gi|224963552|emb|CAX55042.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae Ep1/96]
 gi|283477811|emb|CAY73727.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae DSM 12163]
          Length = 171

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSASERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170


>gi|312879270|ref|ZP_07739070.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782561|gb|EFQ22959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 162

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  +  ++ RYPP      ++ +L   Q    ++ R  +  VA  L +   RV  +ATFY
Sbjct: 12  AFDLEALLRRYPPH--PRYLLAILQDVQSACRFLPRTVLGRVAEYLRVPESRVFGVATFY 69

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
               L+P G R  V+VC  T C LRG  K++E     +  +      DG  S E V C G
Sbjct: 70  KALSLTPRG-RKTVKVCMGTACHLRGAPKVLEALEAALGIRSGGTTEDGAFSLETVNCLG 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170
           AC  AP+V +    Y  ++P +++ +++
Sbjct: 129 ACALAPVVTVEDTPYGTMSPAKVQAMLE 156


>gi|330981368|gb|EGH79471.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 165

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFPQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|281357848|ref|ZP_06244334.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281315795|gb|EFA99822.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 176

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
           P R + ++I +L RAQ   G++S      VA  L+++   V  + +FY+ F   P+G R 
Sbjct: 38  PDRRRGSLIQILHRAQHLFGYLSEEVQSFVAARLNISRAEVYGVISFYSYFIDQPIG-RY 96

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  T C ++G  K+++  + ++  +      DG      + C GAC  AP+VM+ +
Sbjct: 97  KINVCTGTACFVKGAPKVLDEFKRRLEIREGESTPDGKFFLGALRCVGACSLAPVVMVNE 156

Query: 155 DTYEDLTPERLEEII 169
             Y ++T E++ +I+
Sbjct: 157 KVYGNVTAEKVADIL 171


>gi|300854658|ref|YP_003779642.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
           13528]
 gi|300434773|gb|ADK14540.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
           13528]
          Length = 160

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L RAQ+  G++       +AN LD++  +V  + TFY+ F + P G    + +
Sbjct: 25  EGSLISVLHRAQDIFGYLPEELQTFIANKLDISAAKVFGVVTFYSYFTMKPKGKHV-ISI 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G E ++E  RN++  K      DG  + + + C GAC  AP+V++    + 
Sbjct: 84  CMGTACFVKGAENILEEFRNQLKVKDGFTTEDGLFTIDILRCVGACGLAPVVVVDGTVHG 143

Query: 159 DLTPERLEEIIDAFS 173
            +  E ++ I+  ++
Sbjct: 144 KVKVEDVKGILSQYT 158


>gi|88602557|ref|YP_502735.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188019|gb|ABD41016.1| NADH dehydrogenase subunit E [Methanospirillum hungatei JF-1]
          Length = 160

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+I +YP    ++  + +L   Q QE  +    +++V+  LD+    +  + TFY+ F
Sbjct: 6   LDEIIEKYPYPAGRT--LGVLREIQIQERHIPMDTLKLVSEKLDLPLSELFALVTFYSFF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEV 138
            L PVG    + VC  TPC ++G EK++E     +         K L    D   + E  
Sbjct: 64  SLKPVGEHL-ITVCMGTPCHVKGAEKILETLEEHLGLSGEVQDGKYLQTTPDNKFTVEIA 122

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP++ +  + +  +TPER+ EI++ + 
Sbjct: 123 RCFGACSMAPVLHVDGELHGYVTPERIPEILEMYG 157


>gi|188533350|ref|YP_001907147.1| NADH dehydrogenase subunit E [Erwinia tasmaniensis Et1/99]
 gi|292488840|ref|YP_003531727.1| NADH dehydrogenase I subunit E [Erwinia amylovora CFBP1430]
 gi|292899991|ref|YP_003539360.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
 gi|188028392|emb|CAO96253.1| NADH dehydrogenase I chain E [Erwinia tasmaniensis Et1/99]
 gi|291199839|emb|CBJ46963.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
 gi|291554274|emb|CBA21593.1| NADH dehydrogenase I chain E [Erwinia amylovora CFBP1430]
 gi|312173000|emb|CBX81255.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC BAA-2158]
          Length = 171

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQY 170


>gi|269139727|ref|YP_003296428.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
           EIB202]
 gi|267985388|gb|ACY85217.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
           EIB202]
 gi|304559594|gb|ADM42258.1| NADH-ubiquinone oxidoreductase chain E [Edwardsiella tarda FL6-60]
          Length = 166

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ GWV  AAI  +A +L +    V  +ATFY+Q    PVG R  V+ 
Sbjct: 33  RAASIEALKIVQKEHGWVPDAAIGAIAEVLGIPAADVEGVATFYSQIFRQPVG-RHIVRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ +P     DG  +     C G C   P +MI  D ++
Sbjct: 92  CDSVVCHINGYQGIKAALEQKLNIQPGETTFDGRFTLLPTCCLGNCDKGPNMMIDDDLHD 151

Query: 159 DLTPERLEEIIDAF 172
            LTPER  E+++ +
Sbjct: 152 HLTPERALELLERY 165


>gi|227112324|ref|ZP_03825980.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 181

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 12  QPSSFSFSEESAIWVNEV------ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           QP++ S ++++A  +++         ++     ++A I  L   Q++ GWV   AI  +A
Sbjct: 15  QPAADSLTKDNAFVLSDAERDAIEHEKHHYEDARAASIEALKIVQKERGWVPDGAIHAIA 74

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP 
Sbjct: 75  ELLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               DG  +     C G C   P +MI +DT+  +TPE +E +++ +
Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQY 180


>gi|301060420|ref|ZP_07201279.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445474|gb|EFK09380.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 155

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +IP+L  AQ   GW+    ++++A+ L +    V  +A+FY QF+L P+G R  V V
Sbjct: 21  RSELIPILQEAQGIHGWLPGKTMQLIADFLHINEGEVHSVASFYNQFRLMPLG-RKMVTV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  +++E     +  K    + D   + E V C G C  AP+V +    + 
Sbjct: 80  CRGTACHIRGAPQILEDIGQSLRLKEGETSPDLEYTLESVACIGCCALAPVVKVNHKIHG 139

Query: 159 DLTPER 164
           ++T ER
Sbjct: 140 EMTRER 145


>gi|217077620|ref|YP_002335338.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217037475|gb|ACJ75997.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 163

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +L +AQE  GW+ +   + VA  L++    V  + TFY  F   P G +  +++
Sbjct: 26  KGILINVLHKAQELFGWLPQEVQDHVAKKLNIPSSVVYGVVTFYNFFSTKPKG-KNQIKI 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTY 157
           C  T C ++G ++++E   N++  +      DG  S   V C GAC  AP+V++G KD Y
Sbjct: 85  CLGTACYVKGADRVMERFLNELGVEESEVTKDGKFSVHGVRCLGACSMAPVVLVGEKDFY 144

Query: 158 EDLTPERLEEIIDAFSTGQG 177
             +TP+ +  II  +  G+G
Sbjct: 145 GKVTPDMVPGIIKKYK-GEG 163


>gi|239616588|ref|YP_002939910.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505419|gb|ACR78906.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 164

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             +I +L +AQE  G++S    + VA+ L +   +V  + TFY  F   P G +  V++C
Sbjct: 28  GVLINVLHKAQELFGYLSEELQQHVADKLGVPLSQVHGVVTFYNFFTTKPKG-KHQVKIC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYE 158
             T C +RG ++++E  + ++        SDG  S   V C GAC  AP+V++G +D Y 
Sbjct: 87  LGTACYVRGADRILERFKEELGVDLDEPTSDGLFSLHGVRCLGACSMAPVVLVGERDFYG 146

Query: 159 DLTPERLEEIIDAF 172
            +TP+ +  II  +
Sbjct: 147 KVTPDEVSAIIKKY 160


>gi|296134043|ref|YP_003641290.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
 gi|296032621|gb|ADG83389.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
           JR]
          Length = 163

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++VI  Y  +    A+IP+L +AQE  G++       ++  L +    V  + TFY++F
Sbjct: 17  LDKVIEEYRGT--PGALIPVLHKAQEIFGYLPEEVQYRISQGLGLPLADVYGVVTFYSRF 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  + VC  T C ++G  +L+     ++  KP     DG  S E   C GAC 
Sbjct: 75  TLVPKG-KHDIGVCLGTACYVKGAGELVGWLDKELGLKPGGITRDGLFSLETTRCVGACG 133

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+V IG++    LT E+  EII  +
Sbjct: 134 MAPVVTIGEEVKGRLTVEQFSEIIREY 160


>gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77544605|gb|ABA88167.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 159

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E    V+ +I RY      S +IPLL + QE  G++  +  E ++    ++  R+  
Sbjct: 7   FTKEQIDEVDGLIDRYGAH--PSGLIPLLEKVQELLGYLPLSIQEYISEKTHISPNRIYG 64

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+ F +     R  VQ+C  T C ++G + ++E   N           DG  ++E+
Sbjct: 65  VVTFYSFFTMEA-RARHRVQLCLGTACYVKGADAMVEKIENDYQINFGESTEDGRFTFEK 123

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             C GAC  AP+V+I  + +  +T + L+ I++ F+
Sbjct: 124 ARCVGACGLAPVVIIDGEVFGKVTVDSLDGILEQFA 159


>gi|238798407|ref|ZP_04641888.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
           43969]
 gi|238717721|gb|EEQ09556.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
           43969]
          Length = 187

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AESATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|302391062|ref|YP_003826882.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
 gi|302203139|gb|ADL11817.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   Q++  ++    ++ VA  + ++  +V  +ATFY+QF L P G    ++VC  
Sbjct: 33  LIPILQDVQDEYDYLPEPVLKEVATEIGLSASQVYGVATFYSQFHLEPRGDNI-IRVCMG 91

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E ++     ++  +      +   + E V C GAC  AP++MI  DT+  LT
Sbjct: 92  TACHVRGAENILNKIEEELEIEEGETTENLEFTLESVACIGACGLAPVIMINDDTHGRLT 151

Query: 162 PERLEEIIDAF 172
           P+R+ E++  +
Sbjct: 152 PDRVPEVLAQY 162


>gi|77459828|ref|YP_349335.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
 gi|77383831|gb|ABA75344.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +N +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNNLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164


>gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehydrogenase I chain E [Candidatus
           Kuenenia stuttgartiensis]
          Length = 154

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWVS   ++ +A  L++    V  +ATFY       VG    + V
Sbjct: 21  KAATIEALKIVQKHRGWVSDDGVKDIAEFLEITPDEVDSVATFYNLIFRRKVGKHV-ILV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G  ++++    K+  K     SDG  +   + C G C +AP +MI  D Y 
Sbjct: 80  CDSVSCWILGYNQILDYLNKKLGIKFGETTSDGKFTLLPISCLGTCDHAPALMIDNDLYR 139

Query: 159 DLTPERLEEIIDAFS 173
           DLT + L+ I++ +S
Sbjct: 140 DLTTDLLDPILEKYS 154


>gi|52549206|gb|AAU83055.1| NADH-ubiquinone oxidoreductase 24 kD subunit [uncultured archaeon
           GZfos26D6]
          Length = 153

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E+I  Y     +  +I LL+  Q +  W+S+ AI  ++  + +   ++  IA+FY   
Sbjct: 9   VDEIIEHYKGE--EGVLIQLLLDIQSEFNWISKEAIAQISERMQIPKSQIYRIASFYEAM 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L PVG R  +QVC  T C +RG  K+++     +  K     SD   S + V C G C 
Sbjct: 67  SLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCLGCCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P++++    +  +TP  +E I++ +
Sbjct: 126 MGPVIVVDGIYHGKITPAMVEGILETY 152


>gi|160881919|ref|YP_001560887.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160430585|gb|ABX44148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 164

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L +AQE  G++      +++N LD+   ++  + TFY+QF L P G +  + V
Sbjct: 31  KGALMPILQKAQEIYGYLPIEVQTIISNTLDIPLEKIYGVVTFYSQFSLLPKG-KFKISV 89

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   +      K+         DG  S E   C GAC  AP++ +  D Y 
Sbjct: 90  CLGTACYVKGSGDIYNKLMEKLGIASGECTPDGKFSLEACRCIGACGLAPVLTVNDDVYG 149

Query: 159 DLTPERLEEIIDAFS 173
            L+ + L+ I+  ++
Sbjct: 150 RLSVDDLDGILAKYA 164


>gi|301062487|ref|ZP_07203133.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300443417|gb|EFK07536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 155

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +IP+L  AQ   GW+ R  ++++A+ L +    V  +A+FY QF+L P+G R  V V
Sbjct: 21  RSELIPILQEAQGINGWLPREVMQLIADFLHINEGEVHSVASFYNQFRLMPLG-RKMVTV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  +++      +  K    + D   + E V C G C  AP+V +    + 
Sbjct: 80  CRGTACHIRGAPQILVDIGQSLRLKEGETSPDLEYTLESVACIGCCALAPVVKVNHKIHG 139

Query: 159 DLTPER 164
           ++T ER
Sbjct: 140 EMTRER 145


>gi|167037868|ref|YP_001665446.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040765|ref|YP_001663750.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           sp. X514]
 gi|256750975|ref|ZP_05491858.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914803|ref|ZP_07132119.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
 gi|307723963|ref|YP_003903714.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           sp. X513]
 gi|320116285|ref|YP_004186444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855005|gb|ABY93414.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           sp. X514]
 gi|166856702|gb|ABY95110.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750085|gb|EEU63106.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889738|gb|EFK84884.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
 gi|307581024|gb|ADN54423.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           sp. X513]
 gi|319929376|gb|ADV80061.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 160

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I ++  AQE  G++       ++  +++    +  IATFY++F L P G +  + +C
Sbjct: 28  GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG   ++E  + K+  +      DG  S E   C GAC  AP++MI  + +  
Sbjct: 87  MGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146

Query: 160 LTPERLEEIIDAF 172
           LTP+ ++EI+  F
Sbjct: 147 LTPDDVDEILSKF 159


>gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, subunit E [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970032|ref|ZP_03398164.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381387|ref|ZP_07229805.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062158|ref|ZP_07253699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato K40]
 gi|302130468|ref|ZP_07256458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925136|gb|EEB58699.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875770|gb|EGH09919.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965588|gb|EGH65848.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017274|gb|EGH97330.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 165

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFVLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +  +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPATVAKMLEGY 164


>gi|310659597|ref|YP_003937318.1| NADH:ubiquinone oxidoreductase, chain e [Clostridium sticklandii
           DSM 519]
 gi|308826375|emb|CBH22413.1| NADH:ubiquinone oxidoreductase, chain E [Clostridium sticklandii]
          Length = 175

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++ +I +Y   + + A I +L   QE+ G++   ++  +A    M   ++  +ATFYTQ
Sbjct: 20  LIDPIIEKY--GKIKGATITILQGVQEEYGYIPSESLTYIAQKTGMKEAKLYGVATFYTQ 77

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+++PVG +  + +C  T C + G   + +    ++         D   ++  V C G C
Sbjct: 78  FRMNPVG-KNLILLCQGTACHVNGASTIEKAICEELGITEGETTLDKIFTFTNVACLGCC 136

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP++MI  +TY  LTPE+  E++
Sbjct: 137 SLAPVMMINGETYAKLTPEKTVEVL 161


>gi|300717648|ref|YP_003742451.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
 gi|299063484|emb|CAX60604.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
          Length = 171

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E  + + +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIEDNNAFVLSTLERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     + 
Sbjct: 59  AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEDN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIVNLLEQY 170


>gi|253689145|ref|YP_003018335.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755723|gb|ACT13799.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 171

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 38  RAASIEALKIVQKERGWVPDGAINAIADVLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 96

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K+  KP     DG  +     C G C   P +MI  DT+ 
Sbjct: 97  CDSVVCHINGYQGVQAALERKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHS 156

Query: 159 DLTPERLEEIIDAF 172
            +TPE +E +++ +
Sbjct: 157 HVTPEGIESLLEQY 170


>gi|257452668|ref|ZP_05617967.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|257466529|ref|ZP_05630840.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917684|ref|ZP_07913924.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059208|ref|ZP_07923693.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684884|gb|EFS21719.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313691559|gb|EFS28394.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 160

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP+L +AQE  G++     + ++   ++   R+  I TFY  F  +P G +  + V
Sbjct: 23  EMAIIPILHKAQEIFGYLPEEVQQFISQKTNIPIGRIYGIVTFYNFFSTNPKG-KHQISV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K+++  + ++         DG  S + + C GAC  AP++MI  D + 
Sbjct: 82  CTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGACGLAPVMMIDSDVHG 141

Query: 159 DLTPERLEEIIDAF 172
            L  E+++EI+  +
Sbjct: 142 KLEKEQVKEILSFY 155


>gi|308272724|emb|CBX29328.1| hypothetical protein N47_J03090 [uncultured Desulfobacterium sp.]
          Length = 168

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           F        EES   + E +  Y   R  + +IP+L  AQ   G++   AI+++A+ + +
Sbjct: 4   FSSGGIFMGEESGGALKETLEFYSGKR--NELIPILQEAQGIYGYLPEDAIKIIADFIKI 61

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +A+FY QF+L P+G R  V +C  T C +RG  ++++     ++ K    + D
Sbjct: 62  TIGEVYSVASFYNQFRLIPLG-RNTVTICRGTACHIRGAPQIVDEIGKVLNLKEGETSED 120

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              + E V C G C  AP V I    +  L P + + + +
Sbjct: 121 MEYTLETVACIGCCALAPCVKINHKIHGCLEPGQAKGLFN 160


>gi|323141627|ref|ZP_08076509.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
 gi|322413892|gb|EFY04729.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
          Length = 169

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++ +Y  +  +  +IP+L   Q    ++ +  +E +A+        +  + TFY+ F
Sbjct: 25  IDAILEKY--ADVKGPLIPILQEVQNLYNYLPKDVLEYIADKTGTPISEIYGVVTFYSLF 82

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G R  ++VC  T C +RG + +++   N++  K  H   D   + E V C GAC 
Sbjct: 83  HLNPRG-RNVIRVCQGTACHVRGGKTILQALENQLGIKAGHTTDDLRFTLETVACIGACG 141

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP++ I  DT+  LT ++L  I+  +
Sbjct: 142 LAPVMQINDDTHGRLTTDKLAGILARY 168


>gi|297544310|ref|YP_003676612.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842085|gb|ADH60601.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 160

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I ++  AQE  G++       ++  +++    +  IATFY++F L P G +  + +C
Sbjct: 28  GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG   ++E  + K+  +      DG  S E   C GAC  AP++MI  + +  
Sbjct: 87  MGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146

Query: 160 LTPERLEEIIDAF 172
           LTP+ ++EI+  F
Sbjct: 147 LTPDDVDEILSKF 159


>gi|238920564|ref|YP_002934079.1| hypothetical protein NT01EI_2676 [Edwardsiella ictaluri 93-146]
 gi|238870133|gb|ACR69844.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 166

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S F  S+ +   +   I  Y   R  +A I  L   Q++ GWV   AI+ +A +L +   
Sbjct: 10  SVFVLSDSARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDPAIDAIAGVLGIPAA 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  V+ C +  C + G + +       +  +P     DG  
Sbjct: 68  DVEGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLDIQPGETTFDGRF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI  D ++ LTPER  E+++ +
Sbjct: 127 TLLPTCCLGNCDKGPNMMIDDDLHDHLTPERAIELLERY 165


>gi|320540449|ref|ZP_08040099.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
           symbiotica str. Tucson]
 gi|320029380|gb|EFW11409.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
           symbiotica str. Tucson]
          Length = 183

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            +F  S E    +      Y   R  +A I  L   Q++ GWV   AI  +A +L +   
Sbjct: 27  GAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIAQVLGIPAS 84

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG  
Sbjct: 85  DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEQKLNIKPGQTTVDGRF 143

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182


>gi|16761250|ref|NP_456867.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765652|ref|NP_461267.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141054|ref|NP_804396.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412778|ref|YP_149853.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180895|ref|YP_217312.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161502530|ref|YP_001569642.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612947|ref|YP_001586912.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549676|ref|ZP_02343435.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994673|ref|ZP_02575764.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229694|ref|ZP_02654752.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237342|ref|ZP_02662400.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242443|ref|ZP_02667375.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261659|ref|ZP_02683632.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465972|ref|ZP_02699842.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817945|ref|ZP_02829945.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444429|ref|YP_002041585.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449482|ref|YP_002046378.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470009|ref|ZP_03075993.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736216|ref|YP_002115394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251007|ref|YP_002147283.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265747|ref|ZP_03165821.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361712|ref|YP_002141348.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198246025|ref|YP_002216395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387224|ref|ZP_03213836.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929141|ref|ZP_03220284.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353440|ref|YP_002227241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857743|ref|YP_002244394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052941|ref|ZP_03345819.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417787|ref|ZP_03350899.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427013|ref|ZP_03359763.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581186|ref|ZP_03363012.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612346|ref|ZP_03370172.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647301|ref|ZP_03377354.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213853109|ref|ZP_03382641.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224583189|ref|YP_002636987.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912396|ref|ZP_04656233.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829697|ref|ZP_06547238.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392848|sp|P0A1Y8|NUOE_SALTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|60392849|sp|P0A1Y9|NUOE_SALTI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127035|gb|AAV76541.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128528|gb|AAX66231.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|160863877|gb|ABX20500.1| hypothetical protein SARI_00574 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362311|gb|ABX66079.1| hypothetical protein SPAB_00653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403092|gb|ACF63314.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407786|gb|ACF68005.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456373|gb|EDX45212.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711718|gb|ACF90939.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631138|gb|EDX49698.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093188|emb|CAR58632.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214710|gb|ACH52107.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197244002|gb|EDY26622.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289635|gb|EDY28998.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940541|gb|ACH77874.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604322|gb|EDZ02867.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321685|gb|EDZ06884.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273221|emb|CAR38184.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325189|gb|EDZ13028.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327492|gb|EDZ14256.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335581|gb|EDZ22345.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338362|gb|EDZ25126.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345101|gb|EDZ31865.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349325|gb|EDZ35956.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709546|emb|CAR33891.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467716|gb|ACN45546.1| ATP synthase subunit E [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247531|emb|CBG25358.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994420|gb|ACY89305.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158883|emb|CBW18396.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913316|dbj|BAJ37290.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086759|emb|CBY96531.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222974|gb|EFX48045.1| NADH-ubiquinone oxidoreductase chain E [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617071|gb|EFY13977.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617623|gb|EFY14522.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624747|gb|EFY21576.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630296|gb|EFY27066.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634477|gb|EFY31210.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639187|gb|EFY35879.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640050|gb|EFY36717.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645729|gb|EFY42253.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651505|gb|EFY47880.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656064|gb|EFY52363.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659417|gb|EFY55664.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665877|gb|EFY62060.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669883|gb|EFY66024.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673869|gb|EFY69966.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678627|gb|EFY74683.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683577|gb|EFY79591.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687653|gb|EFY83623.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715374|gb|EFZ06945.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130656|gb|ADX18086.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193513|gb|EFZ78718.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198418|gb|EFZ83520.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201932|gb|EFZ86994.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208530|gb|EFZ93469.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209761|gb|EFZ94685.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218297|gb|EGA03007.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222946|gb|EGA07295.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227381|gb|EGA11546.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232292|gb|EGA16395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235674|gb|EGA19758.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241165|gb|EGA25201.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244907|gb|EGA28909.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250026|gb|EGA33920.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251638|gb|EGA35506.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254949|gb|EGA38740.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260329|gb|EGA43948.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268095|gb|EGA51572.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270812|gb|EGA54250.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624146|gb|EGE30491.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628532|gb|EGE34875.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989258|gb|AEF08241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 166

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       ++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 HLTPEAIPELLERY 165


>gi|325660924|ref|ZP_08149551.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085361|ref|ZP_08334447.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472431|gb|EGC75642.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408144|gb|EGG87634.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 163

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  ++E    + EVI +      Q A++ +L +AQE  G+V      ++++ +D+   ++
Sbjct: 9   FQGTKEQETVLREVIEKRKSE--QGALMAVLQQAQEIYGYVPTEVQTIISDEMDIPLHKI 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+  FY QF LSP G +  V +C  T C ++G   +       +        +DG  S 
Sbjct: 67  EEVVDFYPQFTLSPKG-KYQVSICLGTACFVKGAGDVYNKLTEVLGIGGGECTADGKFSL 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++M+  D Y  +  E +EEI+  +
Sbjct: 126 DASRCIGACGMAPILMVNDDVYNHVKAEDVEEILAKY 162


>gi|125972949|ref|YP_001036859.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005705|ref|ZP_05430661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281417160|ref|ZP_06248180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum JW20]
 gi|125713174|gb|ABN51666.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990336|gb|EEU00462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281408562|gb|EFB38820.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum JW20]
 gi|316940815|gb|ADU74849.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 1313]
          Length = 165

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++ ++S +  S  ++A+I +L   QE+  ++ +     ++  L ++  R+  +ATFY  
Sbjct: 13  MIDNILSEHGTS--ETAIIAILQSIQEEYHYIPKEVFPYLSKKLKVSEARIFSVATFYEN 70

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH---QKPLHRNSDGTLSWEEVECQ 141
           F L P G +  ++VC  T C +R    +IE  R ++     KP     D   + E V C 
Sbjct: 71  FSLEPKG-KYIIKVCDGTACHVRKSIPIIERLRKELGLSGTKP--TTDDLMFTVETVSCL 127

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           GAC  AP++ +    Y ++TP++  E+I     G  D
Sbjct: 128 GACGLAPVITVNDKVYAEMTPDKASELIKQLREGDAD 164


>gi|299146442|ref|ZP_07039510.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
 gi|298516933|gb|EFI40814.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
          Length = 162

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ  +G++      ++A+ L +   +V  + TFYT F + P G    + VC  
Sbjct: 32  LINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYTFFTMIPKGKHP-ISVCMG 90

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 91  TACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 150

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 151 PVDVKKIIE 159


>gi|269792084|ref|YP_003316988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099719|gb|ACZ18706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 156

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E++ RYP  R    ++  L   Q +   V R A+E  +    +   RV  +ATFY   
Sbjct: 10  LKEILHRYP--RHPRFLLAFLQDVQREFKHVPREAMEASSERFMVPMSRVYSVATFYRAL 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  ++VC  T C LRG  +++E     +  +      DG  S E V C GAC 
Sbjct: 68  SLVPRG-RKTIKVCMGTACHLRGAPRVLETIEEALQVRCGGTTQDGEFSVEAVNCLGACA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP+VM+    Y  +T  ++ E+++
Sbjct: 127 LAPVVMVEDRCYGSMTAAKVREMLE 151


>gi|289578039|ref|YP_003476666.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289527752|gb|ADD02104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 160

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I ++  AQE  G++       ++  +++    +  IATFY++F L P G +  + +C
Sbjct: 28  GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIFGIATFYSRFTLKPSG-KYKINLC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG   ++E  + K+  +      DG  S E   C GAC  AP++MI  + +  
Sbjct: 87  MGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146

Query: 160 LTPERLEEIIDAF 172
           LTP+ ++EI+  F
Sbjct: 147 LTPDDVDEILSKF 159


>gi|15597836|ref|NP_251330.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAO1]
 gi|107102160|ref|ZP_01366078.1| hypothetical protein PaerPA_01003210 [Pseudomonas aeruginosa PACS2]
 gi|116050627|ref|YP_790554.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891199|ref|YP_002440065.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa LESB58]
 gi|254235624|ref|ZP_04928947.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
 gi|254241072|ref|ZP_04934394.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
 gi|296388899|ref|ZP_06878374.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAb1]
 gi|313107678|ref|ZP_07793860.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
 gi|81540767|sp|Q9I0J8|NUOE_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|9948708|gb|AAG06028.1|AE004692_7 NADH dehydrogenase I chain E [Pseudomonas aeruginosa PAO1]
 gi|115585848|gb|ABJ11863.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167555|gb|EAZ53066.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
 gi|126194450|gb|EAZ58513.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
 gi|218771424|emb|CAW27191.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa LESB58]
 gi|310880362|gb|EFQ38956.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
          Length = 166

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|270262811|ref|ZP_06191082.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
 gi|270043495|gb|EFA16588.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
          Length = 183

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S E    +      Y   R  +A I  L   Q+Q GWV   AI  +A +L +    
Sbjct: 28  AFVLSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPASD 85

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP     DG  +
Sbjct: 86  VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRFT 144

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQY 182


>gi|304316575|ref|YP_003851720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778077|gb|ADL68636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 160

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F EE      +VI          ++I ++  AQE  G++     + ++  +++    +  
Sbjct: 8   FDEEKVNKFKKVIDEL--KNVDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFG 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           IATFY++F L P G +  + +C  T C ++G   +++  + K+        SDG  S E 
Sbjct: 66  IATFYSRFTLKPSG-KYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLEA 124

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++MI  + +  LTP+ +++I+  F
Sbjct: 125 TRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKF 159


>gi|82777693|ref|YP_404042.1| NADH dehydrogenase subunit E [Shigella dysenteriae Sd197]
 gi|309785011|ref|ZP_07679644.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
 gi|81241841|gb|ABB62551.1| NADH dehydrogenase I chain E [Shigella dysenteriae Sd197]
 gi|308927381|gb|EFP72855.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
          Length = 166

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q  +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A++L + 
Sbjct: 8   QTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIADVLGIP 65

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG
Sbjct: 66  ASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +     C G C     +MI +DT+  LTPE + E+++ +
Sbjct: 125 RFTLLPTCCLGNCDKGLNMMIDEDTHAHLTPEAIPELLERY 165


>gi|308187601|ref|YP_003931732.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
 gi|308058111|gb|ADO10283.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
          Length = 171

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      +
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ +
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPGLLEQY 170


>gi|114567217|ref|YP_754371.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338152|gb|ABI69000.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 166

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE+     ++IS +P  +    +I ++        ++ R+A+E+ A  + + + +V  +A
Sbjct: 7   EENIEGFRKIISGFPGEK--RYIIAIMHELSRCYRYLPRSALELTAEYVGVPFSQVYSMA 64

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L P G R +++VC  T C ++G   L++     +   P    +D   S E V 
Sbjct: 65  TFYRAFSLQPRG-RFNIKVCDGTTCHIKGSNILLDEIHKNLGIGPGETTADREFSLETVN 123

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP +++ +  Y  +    L+EII  +  G GD 
Sbjct: 124 CIGACAIAPALLVNERVYPRVNAAALKEIIKEYRGG-GDN 162


>gi|332800414|ref|YP_004461913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
           sp. Re1]
 gi|332698149|gb|AEE92606.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
           sp. Re1]
          Length = 167

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           VNE++ +Y      S +I +    QE   ++    +  ++  + +A  R+  +ATFY  F
Sbjct: 13  VNEILEKYDYK--PSNLISIFQEVQEIYRYLPEEILVYISTAMRIAPSRIFGVATFYESF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144
            L P G +  ++VC  T C +R  +K++   +  ++ K   + +D  L + E V C GAC
Sbjct: 71  SLEPKG-KNLIKVCDGTACHVRNSDKILSTTKEILNLKGDAKTTDDMLFTLETVSCLGAC 129

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170
             AP+++I    Y ++TPE++ ++I+
Sbjct: 130 GLAPVIVINDKVYGNMTPEKVRQLIN 155


>gi|257467681|ref|ZP_05631777.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061975|ref|ZP_07926460.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313687651|gb|EFS24486.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 164

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 75/134 (55%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S++I +L +AQE  G++     E +A  L++   +V  + +FY  F + P G +  + V
Sbjct: 23  KSSLIIVLHKAQEIFGYIPAEVQEFIAEELEVPVAKVYGVVSFYNFFSMEPKG-KYQISV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  K++E    +++ +      DG  S + + C GAC  AP+V++GK+ + 
Sbjct: 82  CTGTACYVRGAGKVLESLEKELNIEVGGVTKDGLFSLDCLRCVGACGLAPVVIVGKEVHG 141

Query: 159 DLTPERLEEIIDAF 172
            + P  ++++I+ +
Sbjct: 142 KVKPTDVKKLIEEY 155


>gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 169

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I ++  AQE  G++       ++  + +    +  I+TFY++F L P G +  + +C
Sbjct: 37  GSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSG-KYKINLC 95

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG   L+E  + K+  +      DG  S E   C GAC  AP++MI  + +  
Sbjct: 96  MGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGR 155

Query: 160 LTPERLEEIIDAF 172
           LTP  ++EI+  F
Sbjct: 156 LTPNDVDEILKKF 168


>gi|332162386|ref|YP_004298963.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606465|emb|CBY27963.1| NADH-ubiquinone oxidoreductase chain E [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666616|gb|ADZ43260.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860333|emb|CBX70646.1| NADH-quinone oxidoreductase subunit E [Yersinia enterocolitica
           W22703]
          Length = 187

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 2   SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           +V  LA    +P++    F  S E    +      Y  +R  +A I  L   Q+Q GWV 
Sbjct: 15  NVANLAVNAAEPATTAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
             AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     
Sbjct: 73  DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            K+  +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|269122187|ref|YP_003310364.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268616065|gb|ACZ10433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 158

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+I +L +AQE  G++ +   E +A+ L+    RV  + +FY+ F + P G  A + V
Sbjct: 25  EEALITVLHKAQEIFGYLPKEVQEFIADKLNEPLARVYGVVSFYSFFTMIPKGDIA-ISV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG EK+++  ++++  K    + DG  S + + C GAC  AP+V++    Y+
Sbjct: 84  CLGTACFVRGAEKVLDEFQSRLGIKAGETSPDGKFSLDVLRCIGACGIAPVVLVNGKVYK 143

Query: 159 DLTPERLEEIIDAF 172
            +    ++ I+  +
Sbjct: 144 KVEAGEVKNIVSEY 157


>gi|148546981|ref|YP_001267083.1| NADH dehydrogenase subunit E [Pseudomonas putida F1]
 gi|148511039|gb|ABQ77899.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida F1]
          Length = 165

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVNQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|114566200|ref|YP_753354.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337135|gb|ABI67983.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 182

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L +AQ+  G++  + ++ +A  L +   +V  IATFYTQF+L P G +  +  
Sbjct: 36  KGSLIAILQQAQDIYGYLPLSVLKCIARELGIKPAKVYGIATFYTQFRLQPAG-KYQIMF 94

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G E++      ++  K      DG  S E   C G C  AP++MI    Y 
Sbjct: 95  CQGTACHVNGSERIESTLCQELKIKRGETTPDGLFSLESAACLGCCSLAPVMMINGQAYG 154

Query: 159 DLTPERLEEIIDAFSTGQGDTIRPG 183
            L+ E+   II      +  ++  G
Sbjct: 155 PLSAEKAIAIIRKIKAAESSSLVGG 179


>gi|210616164|ref|ZP_03290967.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
 gi|210149926|gb|EEA80935.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
          Length = 184

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L +AQE  G++      +++N   +   ++  +ATFY+QF L+P G R  + V
Sbjct: 51  KGALMPILQKAQEIYGYLPIEVQTMISNETKIPLEKIYGVATFYSQFTLNPKG-RYRISV 109

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   +      K+         DG  S +   C GAC  AP++M+  D Y 
Sbjct: 110 CLGTACYVKGSGDIYNYLMEKLGIVGGECTPDGKFSLDACRCVGACGLAPVMMVNDDVYG 169

Query: 159 DLTPERLEEIIDAF 172
            LT + +++I+  +
Sbjct: 170 RLTVDDIDDILAKY 183


>gi|171059433|ref|YP_001791782.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
           cholodnii SP-6]
 gi|170776878|gb|ACB35017.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
           cholodnii SP-6]
          Length = 173

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+  G +   A+  +A  L+++   V  + T+Y  F+  P G R  +QVC 
Sbjct: 27  ALLPILHGVQDAIGHIPSEAVPEIARALNLSRAEVHGVITYYHHFRAEPAG-RHVLQVCR 85

Query: 101 TTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
              C  RG E L+   R ++     +HR++DG  S E V C G C ++P + I +  +  
Sbjct: 86  AESCQARGGEALLAQARERLGCSADVHRSADGAWSVEPVYCLGLCASSPAIQIDERQHAR 145

Query: 160 LTPERLEEIIDA 171
           +T  RL+ ++DA
Sbjct: 146 VTATRLDALLDA 157


>gi|26990816|ref|NP_746241.1| NADH dehydrogenase subunit E [Pseudomonas putida KT2440]
 gi|325277475|ref|ZP_08143080.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
 gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subunit [Pseudomonas putida KT2440]
 gi|324097391|gb|EGB95632.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
          Length = 165

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the NADH:ubiquinone oxidoreductase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 162

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+ G++   A+E V+   D+   R+  + TFY+QF   P G    V++C  
Sbjct: 33  LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRGKHT-VRLCAG 91

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G   + E   + +  K      D   + + V C G C  AP++MI    Y  LT
Sbjct: 92  TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 151

Query: 162 PERLEEIIDAF 172
            E+ EEI+ ++
Sbjct: 152 EEKTEEILKSY 162


>gi|304313909|ref|YP_003849056.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587368|gb|ADL57743.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 149

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S +IP+L   Q+  G++   A+E VA    ++   V  +ATFY QF+  P G R H+ VC
Sbjct: 17  SEIIPILQDIQDVYGYLPEHALEEVAGFTGVSKTHVYGVATFYAQFRFKPKG-RKHIMVC 75

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C + G E++++     +         D   S E V C G C  AP  M+  +    
Sbjct: 76  TGTACHVSGAEQVLDALERHLGIGEGDVTEDMEYSLESVGCIGCCSLAPCAMVNDEVVSR 135

Query: 160 LTPERLEEII 169
           + P R+ +I 
Sbjct: 136 IKPSRVSKIF 145


>gi|222053328|ref|YP_002535690.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221562617|gb|ACM18589.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 150

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++I ++     +S++I +L+  Q +  W+ + A+  VA  L +   R+  IATFY  F
Sbjct: 6   IDQIIDKHNGE--ESSLIQILLDIQSEHHWLPKEALNRVAEKLQVPMSRIQHIATFYKAF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  V VC  T C +RG +++++  ++    KP   +++   S E V C G C 
Sbjct: 64  SLVPKG-RHEVHVCMGTACHVRGAQRVLDTVQDATGIKPGETDAELKFSLETVNCLGCCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
             P++ +    + ++ P ++  +++
Sbjct: 123 LGPVMEVDGKHHGNIAPSQIASVLN 147


>gi|294102541|ref|YP_003554399.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293617521|gb|ADE57675.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 156

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +IP+L  AQ + G++    +E ++  L +    +  +ATFY QF L P G R  ++V
Sbjct: 23  KGGLIPILQEAQHEFGYLPPEVMETISKELKIPKAEIYGVATFYAQFHLKPRG-RHVIRV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  K++E  +            D   + E V C GAC  AP++M+   T+ 
Sbjct: 82  CRGTACHVRGSLKILEKVKELTGVSENETTDDLRFTIEPVACLGACGLAPVMMVDSQTFG 141

Query: 159 DLTPERLEEIIDAF 172
            L P+ +  ++  F
Sbjct: 142 RLAPDMVAGVLAKF 155


>gi|239616591|ref|YP_002939913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505422|gb|ACR78909.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 167

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 2/130 (1%)

Query: 42  VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +I  L   Q+  G ++   A E + +I+ +   ++ E+ TFYT F     G +  ++VC 
Sbjct: 28  LINTLHAIQDYYGNYIPLEATEALRDIMGIPLSKIYEVLTFYTMFSTEKRG-KYIIRVCK 86

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           + PC + G EK++E  ++ +     +   DG  + EE  C G C  +P++MI  + Y +L
Sbjct: 87  SLPCHVTGGEKVVEALKDTLGIDFGNTTEDGLFTLEESSCLGLCGVSPVMMINDEAYGNL 146

Query: 161 TPERLEEIID 170
           TP+++E+II+
Sbjct: 147 TPDKVEKIIN 156


>gi|320354166|ref|YP_004195505.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Desulfobulbus propionicus DSM 2032]
 gi|320122668|gb|ADW18214.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Desulfobulbus propionicus DSM 2032]
          Length = 166

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A+I  L  AQE  G++ R  +  +A  L +   RV  +ATFY  F+L P G    + VC
Sbjct: 30  DALIETLHTAQETLGYLDRDTLAYIAEKLKIPPARVFGVATFYNHFRLKPKGNHT-LAVC 88

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154
             T C ++G ++++     + H +P     D  LS  EV C GAC  AP++     +IGK
Sbjct: 89  TGTACHVKGNDQILAWLGEQYHLRPGETTPDNHLSLVEVRCVGACALAPVIVSDGELIGK 148

Query: 155 DTYED 159
             +++
Sbjct: 149 KNFDE 153


>gi|238763929|ref|ZP_04624886.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
           33638]
 gi|238697897|gb|EEP90657.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
           33638]
          Length = 187

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 2   SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           +V  LA    +P++    F  S E    +      Y  +R  +A I  L   Q+Q GWV 
Sbjct: 15  NVANLAVNAAEPAATIEAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
             AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     
Sbjct: 73  DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            K+  +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|302875424|ref|YP_003844057.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|307689022|ref|ZP_07631468.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|302578281|gb|ADL52293.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 157

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S+++ LL   Q   G++ +     ++  LD++  R+  +ATFY  F L P G +  ++V
Sbjct: 21  ESSIVHLLQSIQNHYGFLPKEVFSYLSQKLDISEARIYSVATFYKNFSLDPKG-KYIIKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C ++    +++  R +++   +   +D  L + E V C GAC  AP++M+    Y
Sbjct: 80  CDGTACHVKKSIPVLDRLRKELNLSEVKLTTDDLLFTVETVHCLGACGRAPVLMVNNKVY 139

Query: 158 EDLTPERLEEIIDAFST 174
             +TP++  E++   S 
Sbjct: 140 PSMTPDKAIELVKNLSV 156


>gi|254167374|ref|ZP_04874226.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|197623637|gb|EDY36200.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
          Length = 149

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V ++I+++      S ++ +L   Q++ G++   AI+ +A  L M    V + A+FY+ F
Sbjct: 5   VLQIINKHKNK--DSKLLAILHDVQDEFGYIPEDAIKTIAKELGMKKGEVYDAASFYSFF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G +  V +C    C ++G  K+IE    +   K      DG  +++ VE  G C 
Sbjct: 63  RFKPEG-KHEVMICDCIVCHIKGSGKIIERIEKEFGVKMGETTKDGKYTFKVVEGLGHCE 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
           ++P++M+    Y DLTP+++ EI+
Sbjct: 122 SSPVMMLDGKIYGDLTPDKVVEIL 145


>gi|260598702|ref|YP_003211273.1| NADH dehydrogenase subunit E [Cronobacter turicensis z3032]
 gi|260217879|emb|CBA32428.1| NADH-quinone oxidoreductase subunit E [Cronobacter turicensis
           z3032]
          Length = 166

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       +  KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQSAIEKHLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 YLTPEGIPELLEQY 165


>gi|261820795|ref|YP_003258901.1| NADH dehydrogenase subunit E [Pectobacterium wasabiae WPP163]
 gi|261604808|gb|ACX87294.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium wasabiae
           WPP163]
          Length = 181

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           +A+   + ++F  S+     +      Y  +R  +A I  L   Q+  GWV   AI  +A
Sbjct: 17  VADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIHAIA 74

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP 
Sbjct: 75  DLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPG 133

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               DG  +     C G C   P +MI  DT+  +TPE +E +++ +
Sbjct: 134 QTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIETLLEQY 180


>gi|322831987|ref|YP_004212014.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
 gi|321167188|gb|ADW72887.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
          Length = 178

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E   P  F  S+     +      Y  +R  +A I  L   Q+  GWV   AI  ++++L
Sbjct: 17  EPVVPPVFVLSDAEREAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIYAISDVL 74

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      ++H KP    
Sbjct: 75  GIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQQLHIKPGETT 133

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            DG  +     C G C   P +MI +DT+  LTPE +  +++ ++
Sbjct: 134 EDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIGSLLERYA 178


>gi|257453970|ref|ZP_05619246.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
           SK60]
 gi|257448635|gb|EEV23602.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
           SK60]
          Length = 169

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E +  YP SR  +A +  L   Q + GWV  A +  +ANIL +    V  +ATFY + 
Sbjct: 25  IHEFMHHYPQSR--AASLDALKIVQRRNGWVDDAQVNAIANILKIPVTDVEGVATFYNRI 82

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             SPVG R  + VC +  C L G E L +     +         D   +   + C G C 
Sbjct: 83  YRSPVG-RHVILVCDSIGCYLVGAENLGQAFERTLGISFGQTTPDNRFTLLPICCLGNCD 141

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             P V+I +DTY  +  E + E+++ ++
Sbjct: 142 KGPAVLIDEDTYGPVQIEEIAELLEQYA 169


>gi|167034690|ref|YP_001669921.1| NADH dehydrogenase subunit E [Pseudomonas putida GB-1]
 gi|166861178|gb|ABY99585.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida GB-1]
          Length = 165

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164


>gi|206896425|ref|YP_002246547.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206739042|gb|ACI18120.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 172

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I +L  AQE  G++     E+++    +    +  I TFY++F + P G +  + +C
Sbjct: 28  GSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIVTFYSRFSIVPAG-KYKISLC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG  +++E  +  +        SDG  S E   C GAC  AP++MI  + Y  
Sbjct: 87  LGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAARCLGACALAPVMMINGEVYGR 146

Query: 160 LTPERLEEII 169
           LTP+   ++I
Sbjct: 147 LTPDEAVKVI 156


>gi|225175950|ref|ZP_03729942.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168538|gb|EEG77340.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 182

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            + IP+L   Q   G+V+   ++ V+ +  +    +  I TFY+QF++ P+G    +QVC
Sbjct: 33  GSAIPILQDIQNTFGYVAPEVLQRVSELSGILESELYSIVTFYSQFRMEPIGENL-IQVC 91

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C L G E++ E   ++   K    + DG  + E+V C G C  AP++ + ++TY  
Sbjct: 92  HGTACHLAGAERVSEAIMHETGAKDGGTSPDGKFTLEKVACLGCCSLAPVITVNEETYGR 151

Query: 160 LTPERLEEIIDAFSTGQGDTIRPG 183
           + P  + +++   + GQ +  + G
Sbjct: 152 VAPNEVGKVLKEIN-GQTEDKKAG 174


>gi|154248926|ref|YP_001409751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152862|gb|ABS60094.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 157

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++ +Y     +  +I +L+  Q++   + R  +  +   L +   ++  +ATFY QF
Sbjct: 8   VEKILEKY--GYKKEMLIKILLEVQKEYRHIPREVVNYIGVALGIPPAKIYGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    + +C  T C + G   L++    ++  KP     D   S ++V C GAC 
Sbjct: 66  SLKPKGEYT-ILICDGTACHMEGSMSLVKAIEEEVGIKPGEVTPDLKFSLDKVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP ++I  + Y +L PE+++EI+
Sbjct: 125 LAPAMVINGEVYGNLKPEKVKEIL 148


>gi|254977027|ref|ZP_05273499.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094354|ref|ZP_05323832.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255316107|ref|ZP_05357690.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518768|ref|ZP_05386444.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651946|ref|ZP_05398848.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|260684910|ref|YP_003216195.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688568|ref|YP_003219702.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|306521695|ref|ZP_07408042.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|260211073|emb|CBA66443.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214585|emb|CBE07150.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
          Length = 165

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E  I+++ + ++      + A+I +L  AQ   G++ +     VA  L +A  +V  + 
Sbjct: 13  DELDIFIDSLTTK------EGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVV 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F   PVG +  + VC  T C ++G +K++     ++  K     SD   S E + 
Sbjct: 67  TFYSYFTTEPVG-KYKISVCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLR 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP+V +    Y  + P+++ EI+D +
Sbjct: 126 CLGACGLAPVVTVNGKVYGKVKPDQVSEILDTY 158


>gi|163782977|ref|ZP_02177972.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881657|gb|EDP75166.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
          Length = 154

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F +E    +N+ I+ +P  R + A++  L   Q+  G+V   ++  +A++LD+    V +
Sbjct: 2   FEQELLEKLNQHINYFP--RKEQAILVCLHEIQDHYGYVPPESLRPLADMLDLPLNHVEQ 59

Query: 78  IATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           +  FY  F + +P   R  ++VC +  C   G ++L++     +  KP     DG     
Sbjct: 60  VVAFYDMFDRQTPAKYR--IRVCVSVVCHFLGKQELLKALEKALKIKPGEVTPDGKFKIV 117

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V+C GAC  AP+ M+ +DTY+    E+L E++  ++
Sbjct: 118 PVQCLGACSEAPVFMVNEDTYKFEGEEKLNEVLSKYT 154


>gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571680|ref|ZP_04849086.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838888|gb|EES66973.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 158

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A+ L +   +V  + TFYT F ++P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++II+
Sbjct: 147 PVDVKKIIE 155


>gi|332981957|ref|YP_004463398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
           australiensis 50-1 BON]
 gi|332699635|gb|AEE96576.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
           australiensis 50-1 BON]
          Length = 150

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
            V E+++R+  +  +  ++P+L+  Q    + ++S   ++ V+ +L +   RV  +ATFY
Sbjct: 1   MVEEIVNRHGIA--EDKLMPILLDIQNSNDKHYLSEDDLKQVSKLLGIPESRVYSVATFY 58

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F L P G +  VQ+C   PC++ G   +I+  R+ +        SDG  + E   C G
Sbjct: 59  SFFSLQPRG-KYIVQICDNAPCIVNGAYNVIDDFRHILGIDMGQTTSDGLFTLEYSSCLG 117

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
            C +AP   I  + Y DL  E+++ I+
Sbjct: 118 CCSHAPAARIAGELYGDLDSEKIKSIL 144


>gi|148657646|ref|YP_001277851.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus sp.
           RS-1]
 gi|148569756|gb|ABQ91901.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 178

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L RAQE  G++S   +  +AN L +   RV  +ATFY  F L+P G  + V VC 
Sbjct: 39  ALIEVLHRAQELFGYLSTDLLLFIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCL 97

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C +RG   ++      +  K  H   DG LS E   C GAC  AP V+         
Sbjct: 98  GTACYVRGAAAILAAAEQMLGIKAGHTTPDGRLSLETARCLGACGIAPTVVFDGTVTGHQ 157

Query: 161 TPERLEEIIDAFSTGQG 177
           TPE+++  ++   TG+G
Sbjct: 158 TPEQVQVWLERL-TGEG 173


>gi|15679544|ref|NP_276661.1| NADH dehydrogenase subunit E [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 149

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +IP+L   Q+  G++   A+E VA+   ++   +  +ATFY QF+  P G R H+ V
Sbjct: 16  KSEIIPILQDIQDAYGYLPEDALEEVASFTGVSRAHLYGVATFYAQFRFKPRG-RKHIMV 74

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G E++++     +  +      D   S E V C G C  AP  M+  +   
Sbjct: 75  CTGTACHVSGAEQVLDALERHLGIEEGDVTDDMEYSLESVGCIGCCSLAPCAMVNDEVVS 134

Query: 159 DLTPERLEEII 169
            + P R+ +I 
Sbjct: 135 RIKPSRVGKIF 145


>gi|148270499|ref|YP_001244959.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170289106|ref|YP_001739344.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|147736043|gb|ABQ47383.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170176609|gb|ACB09661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
          Length = 161

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ +Y   R    +I +L+  QE   ++    I  V+  + +   ++  +ATFY QF
Sbjct: 8   VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G  A + VC  T C + G  ++++    +    P +   D   S ++V C GAC 
Sbjct: 66  SLKPKGKYA-IMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP+++I  + Y +LT ++++EI+
Sbjct: 125 LAPVMVINGEVYGNLTADKVKEIL 148


>gi|326202422|ref|ZP_08192291.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987540|gb|EGD48367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+I +L +AQ   G++ R     VA  L +    V  + +FY+ F   P G    V V
Sbjct: 36  KGALIEILHKAQNIFGYLPRDVQLFVARKLGIPGAEVYGVVSFYSYFTTKPGGLHT-VSV 94

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K+IE  + K+  +      DG  + ++V C GAC  AP+VM+    + 
Sbjct: 95  CMGTACFVRGADKVIEKFKEKLGIESNETTKDGLFTLKDVRCIGACGLAPVVMVDDKVFG 154

Query: 159 DLTPERLEEIIDAFSTGQ 176
            +  E +++II+ + + +
Sbjct: 155 RVKVEDVDDIIEMYRSNK 172


>gi|323702071|ref|ZP_08113739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532953|gb|EGB22824.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 162

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L   Q + G++ +  +  +A  L ++   VL +ATFY QF L P G    ++VC  
Sbjct: 25  LIAILQETQAEYGYLPKEILTYIATALGVSPATVLGVATFYAQFSLIPKGKYV-IRVCDG 83

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C +RG E ++   R ++   P +  +D  + + E V C GAC  AP+V+  ++ +  +
Sbjct: 84  TACHVRGSEPIMMAIRKELGISPDNPTTDDLMFTVETVSCLGACGLAPVVVAHEEVHGQM 143

Query: 161 TPERLEEIIDAFS 173
           TP+ + EII+  +
Sbjct: 144 TPQGIVEIINKLA 156


>gi|302392633|ref|YP_003828453.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
 gi|302204710|gb|ADL13388.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
          Length = 164

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 26  VNEVISRYPPSRCQSAV-IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++E+I +   +R Q  + I +L +AQ+  G +SR     +A  LD+ + +V  + +FY+ 
Sbjct: 20  LDEIIEQ---NRGQEGILINVLHQAQQIFGHLSRKIQVHIAEGLDIPFSKVYAVISFYSL 76

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F     G +  ++VC  T C ++G E ++E  + ++  +P     DG  + E   C GAC
Sbjct: 77  FSTEMRG-KYTIEVCTGTACYVKGAEDILEQFKTELEIEPGETTEDGLFTLETTRCIGAC 135

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             AP++ +G DT+  L  +++ +++D +
Sbjct: 136 GMAPVIKVGDDTHGRLKEDQVSDLLDKY 163


>gi|123441679|ref|YP_001005663.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088640|emb|CAL11435.1| NADH dehydrogenase I chain E [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 172

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A 
Sbjct: 9   AEPAITAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 66

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 67  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 125

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 171


>gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|255102608|ref|ZP_05331585.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308434|ref|ZP_05352605.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255657358|ref|ZP_05402767.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|296451828|ref|ZP_06893547.1| Fe-hydrogenase [Clostridium difficile NAP08]
 gi|296879776|ref|ZP_06903750.1| Fe-hydrogenase [Clostridium difficile NAP07]
 gi|115252465|emb|CAJ70308.1| putative iron-only hydrogenase,electron-transferring subunit
           HymA-like [Clostridium difficile]
 gi|296259307|gb|EFH06183.1| Fe-hydrogenase [Clostridium difficile NAP08]
 gi|296429247|gb|EFH15120.1| Fe-hydrogenase [Clostridium difficile NAP07]
          Length = 165

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E  I+++ + ++      + A+I +L  AQ   G++ +     VA  L +A  +V  + 
Sbjct: 13  DELDIFIDSLATK------EGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVV 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F   PVG +  + VC  T C ++G +K++     ++  K     SD   S E + 
Sbjct: 67  TFYSYFTTEPVG-KYKISVCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLR 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP+V +    Y  + P+++ EI+D +
Sbjct: 126 CLGACGLAPVVTVNGKVYGKVKPDQVSEILDTY 158


>gi|66219966|gb|AAY42999.1| Nqo2 [Rhodothermus marinus]
          Length = 224

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+EE    +     +Y       AV+  L  AQE+ G++    +++VA+ L + Y +V  
Sbjct: 28  FTEEEKAKIARFKEQY--LEPAGAVMKTLWLAQEKFGFLPPEVLQLVADELGIPYAQVYG 85

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYTQ+     G    + VC    C + G   ++     K+         DG  + +E
Sbjct: 86  VATFYTQYYKEKKGKYV-LDVCTCFTCQVCGGYDILHYLEEKLGIHKGETTPDGLFTLQE 144

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           VEC GAC +AP++ +    Y  +LTPE+++++++    G+
Sbjct: 145 VECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGK 184


>gi|150021057|ref|YP_001306411.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149793578|gb|ABR31026.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 163

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +L +AQE  GW+ +     VA  L +    V  + TFY  F   P G +  +++
Sbjct: 25  KGILINVLHKAQELFGWLPKEVQTHVAEKLKIPPSVVYGVITFYNFFSTKPKG-KHQIKI 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTY 157
           C  T C ++G ++++E   N+++ K      DG  S   V C GAC  AP+V++G K+ +
Sbjct: 84  CLGTACYVKGADRVMERFLNELNVKEGEVTKDGNFSVHGVRCLGACSMAPVVLVGEKEFF 143

Query: 158 EDLTPERLEEIIDAFSTGQG 177
             +TP+ +  II  F  G+G
Sbjct: 144 GKVTPDMVPGIIKKFQ-GEG 162


>gi|238759965|ref|ZP_04621118.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
 gi|238701792|gb|EEP94356.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
          Length = 187

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A +L +    V
Sbjct: 33  FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPASDV 90

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  + 
Sbjct: 91  EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|291544583|emb|CBL17692.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
           18P13]
          Length = 166

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI---RVLEIATFYTQFQLSPVGTRAH 95
           + A++P++ +AQ+  G++    IEV   I DM  I   ++  +ATFY+QF L P G +  
Sbjct: 32  KGALMPIMQKAQDIYGYLP---IEVQTIISDMTGIPLEKIYGVATFYSQFSLYPKG-QYT 87

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   + E  +  +  +     +DG  S E   C GAC  AP++ I  D
Sbjct: 88  ISVCLGTACYVKGSGDVFEKLKQILGIEDGQCTADGKFSLEACRCIGACGLAPVMTINDD 147

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y  LT E L  I++ ++
Sbjct: 148 VYGRLTVEELPAILEKYN 165


>gi|156933125|ref|YP_001437041.1| NADH dehydrogenase subunit E [Cronobacter sakazakii ATCC BAA-894]
 gi|156531379|gb|ABU76205.1| hypothetical protein ESA_00935 [Cronobacter sakazakii ATCC BAA-894]
          Length = 166

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A +L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 33  RAASIEALKIVQKQRGWVPDGAIYAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       +  KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 92  CDSVVCHITGYQGIQSAIEKHLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMINEDTHS 151

Query: 159 DLTPERLEEIIDAF 172
            LTPE + E+++ +
Sbjct: 152 YLTPEGIPELLEQY 165


>gi|225569034|ref|ZP_03778059.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
           15053]
 gi|225161833|gb|EEG74452.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
           15053]
          Length = 164

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ +EE    +  VI+     +   A++P+L RAQ+  G++     ++++N   +   ++
Sbjct: 10  FTGTEEQEKELLGVINELKDEK--GALMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+QF LSP G R  + VC  T C ++G   +      K+         DG  S 
Sbjct: 68  YGVTTFYSQFNLSPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++MI  + Y  LT + +++I+  +
Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163


>gi|253701407|ref|YP_003022596.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
 gi|251776257|gb|ACT18838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 152

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ +I ++     QS++I +L+  Q +  W+ + A++ V   LD+   R+  I TFY  F
Sbjct: 8   IDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKAF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G R  + VC  T C +RG +++++   + I  K    +++   S E V C G C 
Sbjct: 66  SQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDAELKFSLETVNCLGCCA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P+++I  + + ++ P +  E++  +
Sbjct: 125 LGPVMVIDGEYHGNVAPAQSAEVLKNY 151


>gi|238788651|ref|ZP_04632443.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
           33641]
 gi|238723246|gb|EEQ14894.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
           33641]
          Length = 187

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 3   VRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58
           V  LA    +P++    F  S E    +      Y  +R  +A I  L   Q++ GWV  
Sbjct: 16  VANLAVNAAEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPD 73

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
            AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      
Sbjct: 74  GAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISK 132

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           K+  +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 133 KLSIEPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSHLKPEDIEKLLEQY 186


>gi|238794604|ref|ZP_04638211.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
           29909]
 gi|238726090|gb|EEQ17637.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
           29909]
          Length = 187

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A +L +    V
Sbjct: 33  FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAEVLGIPASDV 90

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  + 
Sbjct: 91  EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQTTFDGRFTL 149

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|255527513|ref|ZP_05394381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|255508783|gb|EET85155.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
          Length = 160

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           +VI +YP    Q   + +L   Q +  ++ R ++E +A  L+    R+  +ATFY    L
Sbjct: 15  DVIQKYPKE--QRYTLAILQDIQRKYRYIPRESLEALAEYLETPVSRLYGMATFYKALSL 72

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           +P G    + VC  T C + G   +++     +  +P     D   S   V C G C  A
Sbjct: 73  TPKGENI-ITVCDGTACHVSGSMVVMDELEKILGIRPGGTTEDRKFSINTVNCIGCCAIA 131

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++MI +  Y +LTP+ ++EI+D +
Sbjct: 132 PVMMINEKFYGNLTPKMIKEILDEY 156


>gi|116749389|ref|YP_846076.1| NADH dehydrogenase subunit E [Syntrophobacter fumaroxidans MPOB]
 gi|116698453|gb|ABK17641.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 163

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           I ++   Q+  G+++  A+E  A IL M  + + E+ATFY     SPVG R  + VC + 
Sbjct: 25  IDVMFELQDHYGYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVG-RYVIHVCDSA 83

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
            C + G +++I+    ++       + DG  +   V C G C  AP +MI ++ Y  LT 
Sbjct: 84  VCWMEGYQRIIDYLCQRLKLTVGGTSPDGLFTLLPVCCIGYCDRAPAMMINRNVYGRLTR 143

Query: 163 ERLEEIID 170
           E+++ I+D
Sbjct: 144 EKIDRILD 151


>gi|300723693|ref|YP_003713000.1| NADH dehydrogenase I subunit E [Xenorhabdus nematophila ATCC 19061]
 gi|297630217|emb|CBJ90868.1| NADH dehydrogenase I chain E [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P  F  S E    + +    Y   R  +A I  L   Q+Q GWV   AI  +A +L +  
Sbjct: 24  PDEFVLSAEERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPA 81

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFY+Q    PVG R  ++ C +  C + G + +     + ++ +P    +DG 
Sbjct: 82  SDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQGVQAAIESHLNIRPGQTTADGR 140

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +     C G C   P +MI +DT+  + PE +E++++ +
Sbjct: 141 FTLLPTCCLGNCDKGPAMMIDEDTHCYVRPEEIEKLLEQY 180


>gi|170721054|ref|YP_001748742.1| NADH dehydrogenase subunit E [Pseudomonas putida W619]
 gi|169759057|gb|ACA72373.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida W619]
 gi|313498028|gb|ADR59394.1| NADH dehydrogenase subunit E [Pseudomonas putida BIRD-1]
          Length = 165

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|288817440|ref|YP_003431787.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
 gi|288786839|dbj|BAI68586.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
 gi|308751047|gb|ADO44530.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 154

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EES +   +  + Y P R + A++  L   Q   G +   A+E VA ILD+    V  + 
Sbjct: 3   EESLLEKLKQHAEYFPKR-EQAILLCLHEVQNHYGHIPEFALEEVAKILDLPLNHVENVV 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F       R  ++VC +  C L G +KLI+  R  ++        DG      V+
Sbjct: 62  SFYDMFDRGE-PARHRIRVCVSVVCHLMGKDKLIKALRELLNIDFGQVTKDGRFKLLAVQ 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  AP  M+ +D Y+    E+L E++  ++
Sbjct: 121 CLGACSEAPFFMVDEDAYKFENKEKLNEVLSRYA 154


>gi|71892263|ref|YP_277997.1| NADH dehydrogenase subunit E [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796369|gb|AAZ41120.1| NADH dehydrogenase I chain E [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 173

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S+E    + E  + Y   R  S  I  L   Q+  GWV   AI ++A IL ++   +
Sbjct: 19  FQLSQEECNAIQEECTHYEDMRAVS--IEALKIIQKNHGWVPDEAIILIAKILCISAADL 76

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY Q    PVG R  ++ C +  C L GCEK+       ++       SD   + 
Sbjct: 77  EGVATFYNQIFRQPVG-RHIIRYCDSAVCYLVGCEKIKNTLTYLLNITVGSTTSDNRFTL 135

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C  AP++MI KD Y  + PE + +++  +
Sbjct: 136 LPTCCLGICDKAPVIMIDKDIYPYIVPETITKLLGQY 172


>gi|15616777|ref|NP_239989.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681532|ref|YP_002467917.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682088|ref|YP_002468472.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471213|ref|ZP_05635212.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133961|sp|P57255|NUOE_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain E [imported] -
           Buchnera sp. (strain APS)
 gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621821|gb|ACL29977.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624375|gb|ACL30530.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085899|gb|ADP65981.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086472|gb|ADP66553.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087053|gb|ADP67133.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 162

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           I  L   Q++ GWVS  AI  +A IL +    V  +ATFY+Q    PVG R  ++ C + 
Sbjct: 33  IEALKIVQKKRGWVSDQAIYAIAEILHINPSDVEGVATFYSQIFRKPVG-RNIIRYCDSV 91

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
            C L G +++     N +  K      D   +   V C G C   P +MI +DTY  LTP
Sbjct: 92  VCFLTGYKRIQIALENYLKIKIGETTKDDRFTLLPVCCLGNCDKGPTIMINEDTYSVLTP 151

Query: 163 ERLEEIIDAF 172
           E +  +++++
Sbjct: 152 ESIPSLLESY 161


>gi|311697063|gb|ADP99936.1| ATP synthase subunit E [marine bacterium HP15]
          Length = 158

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q+  G++  +++ ++A  L ++   V  + +FY  F+  PVG R  V VC
Sbjct: 14  GALLPILHSVQDHFGYIPESSVPIIAEKLQLSRAEVHGVISFYHHFRSHPVGCRV-VHVC 72

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G   L E  + ++       +SD   + E V C G C  AP + +  D +  
Sbjct: 73  RAEACQAMGGRTLEEHIKARLGVDYHGTSSDNEFTLEPVYCLGNCACAPSIRVNDDIHGR 132

Query: 160 LTPERLEEIIDAFSTGQGDTIR 181
           +TP++ + ++D  +T   D ++
Sbjct: 133 VTPQKFDRLVDELTTTALDFVQ 154


>gi|152985085|ref|YP_001347931.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PA7]
 gi|150960243|gb|ABR82268.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa PA7]
          Length = 166

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct]
          Length = 167

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKRRGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|330503268|ref|YP_004380137.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
 gi|328917554|gb|AEB58385.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
          Length = 164

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q+Q GWV   A + +  IL +
Sbjct: 5   IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAADAIGEILGI 62

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        SD
Sbjct: 63  PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVVSEMQKQLGIGLGQTTSD 121

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              +   V C G C  AP +MI  DT+ D+ P+ + ++++ +
Sbjct: 122 ERFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEDY 163


>gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
 gi|85723788|gb|ABC78731.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
          Length = 150

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++I ++  +   SA+I +L+  QE+  W+ + A+E V+  L +    V   ATFY  F
Sbjct: 6   IDQIIEKHQGA--SSALIQILLDIQEENHWLPKEALERVSEKLQIPITTVRHAATFYKVF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G R  V VC  T C +RG  ++++  +     KP   + D   S E V C G C 
Sbjct: 64  STVPKG-RHQVHVCLGTACHVRGATRVLDTVQESTGIKPGETDLDLKFSLETVNCLGCCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P++ I    Y   TP +  +++  +
Sbjct: 123 LGPVMEIDGKVYGKATPSKTIDVLKKY 149


>gi|330508799|ref|YP_004385227.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
           concilii GP-6]
 gi|328929607|gb|AEB69409.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
           concilii GP-6]
          Length = 153

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I LL+  Q +  W+S+ A++ ++  L +   R+  IA+FY    L P+G +  + V
Sbjct: 20  EGSLIQLLLDLQSEFNWISKDALQEISERLKIPPSRIYRIASFYEAISLKPIG-KHKISV 78

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   +++   +K+  K      D   + + V C G C   P++++  D + 
Sbjct: 79  CMGTACQVRGSGMILDRTESKLKIKQGGTTPDMRFTLKRVNCLGCCAIGPVMVVDDDYHG 138

Query: 159 DLTPERLEEIIDAF 172
            LT +R+E II  +
Sbjct: 139 RLTSDRVERIIKKY 152


>gi|104782524|ref|YP_609022.1| NADH dehydrogenase subunit E [Pseudomonas entomophila L48]
 gi|95111511|emb|CAK16231.1| NADH dehydrogenase I chain E [Pseudomonas entomophila L48]
          Length = 165

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164


>gi|70731259|ref|YP_261000.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf-5]
 gi|68345558|gb|AAY93164.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 165

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAVYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164


>gi|268317704|ref|YP_003291423.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
           4252]
 gi|262335238|gb|ACY49035.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
           4252]
          Length = 224

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+EE    +     +Y       AV+  L  AQE+ G++    +++VA+ L + Y +V  
Sbjct: 28  FTEEEKAKIARFKEQY--LEPAGAVMKTLWLAQEKFGFLPPEVLQLVADELGIPYAQVYG 85

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYTQ+     G    + VC    C + G   ++     K+         DG  + +E
Sbjct: 86  VATFYTQYYKERKGKYV-LDVCTCFTCQVCGGYDILHYLEEKLGIHKGETTPDGLFTLQE 144

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           VEC GAC +AP++ +    Y  +LTPE+++++++    G+
Sbjct: 145 VECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGK 184


>gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
 gi|89336165|dbj|BAE85760.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
          Length = 160

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R + A+IP+L  AQ   G++    I+ ++  L +   +V  + TFY QF+L+P+G R  +
Sbjct: 25  REKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFYAQFRLTPMG-RNVI 83

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            VC  T C +RG  K++E        K      DG  + E V C GAC  AP++ I  + 
Sbjct: 84  SVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIGACGLAPVMSINGNV 143

Query: 157 YEDLTPERLEEIIDAF 172
           +  L  +++  I+  +
Sbjct: 144 HGRLNADQIPGILAEY 159


>gi|116748291|ref|YP_844978.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697355|gb|ABK16543.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 162

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 35  PSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93
           P R Q +++I +L +AQE  G++ +     VA  L ++   +  + TFY  F L P G R
Sbjct: 23  PYRGQPNSLIQVLAKAQEYIGYLPKWVQVQVAEGLGLSLQEIYGVTTFYAFFSLIPRG-R 81

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             + VC  T C ++G + +++  R+ I  KP     D   + E V C GAC  AP V++ 
Sbjct: 82  HKLSVCAGTACYVKGTKNVLKGVRDAIGIKPGQTTPDSRFTMEIVRCIGACGLAPAVIVN 141

Query: 153 GKDTYEDLTPERLEEIIDAF 172
           GKD +  L  E++ EI+  +
Sbjct: 142 GKDVHGRLEAEQIPEILSLY 161


>gi|270297047|ref|ZP_06203246.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273034|gb|EFA18897.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 158

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A  L +   RV  + TFYT F + P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRIIAAQLGIPVSRVYGVVTFYTFFTMLPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
           P  +++I++
Sbjct: 147 PIDVKKILE 155


>gi|238897508|ref|YP_002923187.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465265|gb|ACQ67039.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 174

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    + E    Y  +R  +A I  L   Q++ GWV   AI  +A +L +    V
Sbjct: 20  FVLSSEERDAIEEEKHHYEDAR--AASIEALKIVQKKRGWVPDEAIHAIAEVLGIPASDV 77

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G +K+  V   K+  +P     DG  + 
Sbjct: 78  EGVATFYSQIFRKPVG-RHVIRYCDSVVCYITGYQKIQAVLEEKLGIQPGQTTKDGRFTL 136

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L  E ++ +++ +
Sbjct: 137 LPTCCLGNCDKGPTMMIDDDTHSHLQIENIDTLLEQY 173


>gi|169824853|ref|YP_001692464.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|302379620|ref|ZP_07268105.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234495|ref|ZP_07321132.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna BVS033A4]
 gi|167831658|dbj|BAG08574.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|302312527|gb|EFK94523.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494329|gb|EFL54098.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna BVS033A4]
          Length = 161

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L  AQ++ G++ +  I  ++ ILD+    +  + TFY QF L P G +  +QVC  
Sbjct: 31  LMPVLQHAQDEFGYLPKEIITTISKILDIPLSEIYGVITFYAQFSLIPKG-KYDIQVCEG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G +++ E  +  +         D   S     C G C  AP+++I  D Y  + 
Sbjct: 90  TACYVKGAQRVSEKLQEILKIPAGSTTEDQKFSITPCRCVGLCALAPVIVINGDVYGKVA 149

Query: 162 PERLEEIIDAFS 173
              LE I+  ++
Sbjct: 150 VNELESIVSKYN 161


>gi|307266698|ref|ZP_07548226.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326391449|ref|ZP_08212985.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918300|gb|EFN48546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325992528|gb|EGD50984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 160

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I ++  AQE  G++       ++  +++    +  IATFY++F L P G +  + +C
Sbjct: 28  GSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSG-KYKINLC 86

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG   ++   + K+  +      DG  S E   C GAC  AP++MI  + +  
Sbjct: 87  MGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGR 146

Query: 160 LTPERLEEIIDAF 172
           LTP+ ++EI+  F
Sbjct: 147 LTPDDVDEILSKF 159


>gi|239905423|ref|YP_002952162.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795287|dbj|BAH74276.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 168

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ RY   R  + ++P+L   QE+  ++ +  +  VA  L +    V  +ATFY  F L 
Sbjct: 21  ILDRY--DRHPARLVPILQALQEEYRYLPQEVLSYVATSLRIPEANVFGVATFYAHFALE 78

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNA 147
           P G +  V++C  T C ++    ++E  R ++        + D   + E V C GAC  A
Sbjct: 79  PKG-KYVVRLCDGTACHVKQSIPILEALRARLDLTEAKATTPDMLFTVETVACLGACGLA 137

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P+++I +D Y  +TPER  ++IDA 
Sbjct: 138 PVLVINEDVYGQMTPERAVDLIDAI 162


>gi|219667453|ref|YP_002457888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219537713|gb|ACL19452.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 160

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R + A+IP+L  AQ   G++    I+ ++  L +   +V  + TFY QF+L+P+G R  +
Sbjct: 25  REKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFYAQFRLTPMG-RNVI 83

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            VC  T C +RG  K++E        K      DG  + E V C GAC  AP++ I  + 
Sbjct: 84  SVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIGACGLAPVMSINGNV 143

Query: 157 YEDLTPERLEEIIDAF 172
           +  L  +++  I+  +
Sbjct: 144 HGRLNADQIPGILAEY 159


>gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus]
          Length = 124

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 52/89 (58%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+ 
Sbjct: 35  VHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVG 91
            VA ILD++ +RV E+ATFYT F   PVG
Sbjct: 95  KVAEILDVSPMRVHEVATFYTMFNRQPVG 123


>gi|320160661|ref|YP_004173885.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
 gi|319994514|dbj|BAJ63285.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
          Length = 168

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +A+I  L   QE  G+VSR A+  VA  L++   +V  +ATFY  F L+PVG      +C
Sbjct: 32  TALIETLHSIQETFGFVSREALNYVAESLNIPPAKVFGVATFYNLFNLNPVGEHV-FSLC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++++  + +   +P     DG L++    C GAC  AP++++  +    
Sbjct: 91  TGTACYVKGAGEIVDFMKEEFGLEPGQTTPDGKLTFMVARCVGACGLAPVMILDGEVVGK 150

Query: 160 LTPERLEEII 169
           L  E ++  I
Sbjct: 151 LGVEEMKAKI 160


>gi|330830048|ref|YP_004393000.1| NADH dehydrogenase I subunit E [Aeromonas veronii B565]
 gi|328805184|gb|AEB50383.1| NADH dehydrogenase I, E subunit [Aeromonas veronii B565]
          Length = 180

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A  L +    V  +ATFY+Q    PVG R  ++V
Sbjct: 47  RAASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 105

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G E+L+   +  ++  P     DG  +   V C G C   P +MI  DTY 
Sbjct: 106 CDSMVCYINGHEELMAGLKEVMNLGPGQTTPDGRFTLLPVCCLGNCDKGPAIMIDDDTYG 165

Query: 159 DLTPERLEEIIDAF 172
            L P  L + ++A+
Sbjct: 166 GLDPVTLLKTLEAY 179


>gi|189485527|ref|YP_001956468.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287486|dbj|BAG14007.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 157

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +IP+L   QE+  ++ +  +  +A  L+ +   V  +ATF++ F L   G R  +++
Sbjct: 22  KSKLIPILQAVQEEYKYLPKEILVFIALSLNTSPAGVYGVATFFSHFTLKHKG-RHIIKI 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           C    C ++    LI   +NK+  K   +   D   + E V C GAC  AP+ +I +D Y
Sbjct: 81  CDGIACHVKKSNSLINALKNKLGLKEAEYSTKDVFFTIETVSCLGACGLAPVFLIDEDIY 140

Query: 158 EDLTPERLEEIID 170
             +TP++  E+ID
Sbjct: 141 GQMTPDKAVELID 153


>gi|313673508|ref|YP_004051619.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component
           subunit hoxe [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940264|gb|ADR19456.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Calditerrivibrio nitroreducens DSM 19672]
          Length = 164

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           ++I +L   QE  G++   A++ V+  L++ Y R   +ATFY  F L P G    V VC 
Sbjct: 30  SLIEVLHAVQEYFGYIDEDALKFVSESLNIPYSRAYSVATFYHYFTLKPQGEHICV-VCT 88

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G  +L+   +N           DG +S     C GAC  AP+V++      ++
Sbjct: 89  GTACYIKGANQLLAHLKNHHDLSDGDTTKDGKVSLLTARCVGACSLAPVVVVDNKILGEI 148

Query: 161 TPERLEEII 169
             E+L+++I
Sbjct: 149 NSEKLDDVI 157


>gi|302389111|ref|YP_003824932.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199739|gb|ADL07309.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 170

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E+I  +   R    +I +L   Q +  ++ +  +  +A  ++++  +V  +ATFY  F
Sbjct: 14  VDEIIEAH--GRNPVNIISILQEVQNEYRYLPQDVLNYIATAMNISPSKVYGVATFYENF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGAC 144
            L P G    +++C  T C ++    L+     K+  K   R ++  L + E V C GAC
Sbjct: 72  SLEPKGKYV-IRICDGTACHVKNSTALLNALTKKLGLKEGQRTTEDLLFTLETVSCLGAC 130

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF---STGQGDTIR 181
             AP++++ ++ +  +TPE+ EEIID       GQ D  R
Sbjct: 131 GLAPVMVVNEEVHGKVTPEKAEEIIDEIINKERGQNDKER 170


>gi|148262415|ref|YP_001229121.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
 gi|146395915|gb|ABQ24548.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
          Length = 157

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+E  A +L ++ ++V E+ATFY      PVG R  +  
Sbjct: 21  REAAVDVMKELQRHYGWLTDEAVEEAAALLGLSTLQVEELATFYEMIYRRPVGRRV-IHA 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E ++      +  +P     DG  +     C G C + P +MIG   Y 
Sbjct: 80  CDSISCWAVGGEHMMAQLARHLGIEPGETTKDGMFTLLPCCCLGNCGDGPAMMIGDTLYG 139

Query: 159 DLTPERLEEII 169
            LT E+LEEI+
Sbjct: 140 RLTAEKLEEIL 150


>gi|220931475|ref|YP_002508383.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992785|gb|ACL69388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 162

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+I +Y        +IP+L  AQE  G++       +A  L +   +V  + +FY+ F
Sbjct: 17  LDEIILKYKDK--PGPLIPVLHEAQELYGYLPEEVQSYIAEGLGVPVSKVSGVVSFYSFF 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + VC  T C ++G E+++   + ++  +    + DG  +   + C GAC 
Sbjct: 75  TTKPKGEHT-INVCMGTACYVKGAEEILNRLKEELGIEEGETSEDGKFTMVGMRCLGACS 133

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+V I    Y  +TPE++ EII+++
Sbjct: 134 LAPVVTIDDKVYGKVTPEKMMEIIESY 160


>gi|222100043|ref|YP_002534611.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
 gi|221572433|gb|ACM23245.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ ++   R    +I +L+  QE   ++    I  V+  + +   ++  +ATFY QF
Sbjct: 11  VEEILRKHGYKR--ENLIKILLEIQELYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G  A + VC  T C + G  ++++    +    P +   D   S ++V C GAC 
Sbjct: 69  SLKPKGKYA-IMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP+++I  + Y +LT E+++EI+
Sbjct: 128 LAPVMVINDEVYGNLTAEKVKEIL 151


>gi|281412805|ref|YP_003346884.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
 gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [Thermotoga maritima MSB8]
 gi|281373908|gb|ADA67470.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
          Length = 161

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ +Y   R    +I +L+  QE   ++    I  V+  + +   ++  +ATFY QF
Sbjct: 8   VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  + VC  T C + G  ++++    +    P +   D   S ++V C GAC 
Sbjct: 66  SLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP+++I  + Y +LT ++++EI+
Sbjct: 125 LAPVMVINGEVYGNLTADKVKEIL 148


>gi|71065154|ref|YP_263881.1| NADH dehydrogenase subunit E [Psychrobacter arcticus 273-4]
 gi|71038139|gb|AAZ18447.1| NADH dehydrogenase I, E subunit [Psychrobacter arcticus 273-4]
          Length = 169

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    ++E +  YP  R  +A +  L   Q++ GWV  A +  +ANIL++    +  
Sbjct: 17  LTAEEIAAIHEFMHHYPHPR--AASLDALKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + +C +  C L G E L    + ++        +D   +   
Sbjct: 75  VATFFNRIYRQPVG-RHVILICDSVACYLTGYEALAAELKAQLGIDYGQTTADKRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C   P V+I +DTY  + PE + ++++ ++
Sbjct: 134 ICCLGNCDKGPAVLINEDTYGPVQPEEVAQLLELYA 169


>gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
 gi|4981988|gb|AAD36494.1|AE001794_10 Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
          Length = 164

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++ +Y   R    +I +L+  QE   ++    I  V+  + +   ++  +ATFY QF
Sbjct: 11  VEEILKKYGYKR--ENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  + VC  T C + G  ++++    +    P +   D   S ++V C GAC 
Sbjct: 69  SLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP+++I  + Y +LT ++++EI+
Sbjct: 128 LAPVMVINGEVYGNLTADKVKEIL 151


>gi|322417696|ref|YP_004196919.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320124083|gb|ADW11643.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 160

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A++  A +L ++ ++V E+ATFY      PVG R  + V
Sbjct: 21  REAAVDVMKELQAHYGWLTDEAVQEAAALLGLSPLQVEELATFYEMIYRRPVG-RKVIHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C    C+ LI   ++++   P    +DG  +     C G C ++P + +G   Y 
Sbjct: 80  CDSISCWCADCDGLIRHLKDRLGVGPGETTADGMFTLIPCCCMGMCGDSPAMSVGGTPYG 139

Query: 159 DLTPERLEEIID 170
            LTPE  +E+++
Sbjct: 140 RLTPELADEVLE 151


>gi|224824819|ref|ZP_03697926.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
 gi|224603312|gb|EEG09488.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
          Length = 166

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68
            S +S   ++  +++YP  + +SAV+  L  A E+            +++  IE VAN L
Sbjct: 2   LSAQSLALIDREVAKYPADQKRSAVMGALRIALEERRSTGETPEARCLNQEVIEFVANYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++  +   E+ATFY  + + PVG +  + VC   PC L G     E    K+       +
Sbjct: 62  EIPPVAAYEVATFYNMYDMKPVG-KYKITVCTNLPCALSGGVNAAEYISGKLGIAIGETS 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEE 167
           +DG  +  E EC GAC +AP++++   +    +TPE +++
Sbjct: 121 TDGMYTLLEGECMGACGDAPVLLVNNHSMCSFMTPEAIDK 160


>gi|296132536|ref|YP_003639783.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
 gi|296031114|gb|ADG81882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
           JR]
          Length = 179

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q   G+V + A++ ++  LD+  + +  + TFY QF+L+P G +  ++VC  
Sbjct: 31  LLPILQEVQHNLGYVPKQAMQQISEALDIPEVEIYGVTTFYNQFRLNPPG-KHQIKVCMG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G   +++    +++ K      D   S E V C G C  AP+V+I +     + 
Sbjct: 90  TACHMTGGHIIMDSFARRLNIKEGETTPDREFSLERVACVGCCALAPVVVIDEKIEGKVR 149

Query: 162 PERLEEIIDAF 172
           P R++ I+  F
Sbjct: 150 PTRVDGILLGF 160


>gi|254282424|ref|ZP_04957392.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
 gi|219678627|gb|EED34976.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
          Length = 167

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           + P R   A+  L +  Q   GWVS  ++  +A  L+M+   +  +ATFY      PVG 
Sbjct: 26  HVPYRSAVAIDALKI-VQAHRGWVSDESLRAIARHLEMSAEELDGVATFYNLIFRQPVGD 84

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + +C +  C ++GC+K+       +        +D   +   V C GAC  AP++M+
Sbjct: 85  RV-ILLCNSVTCWIKGCDKVQAAITENLGIGLGETTADNAFTLLPVTCLGACDRAPVMMV 143

Query: 153 GKDTYEDLTPERLEEII 169
           G D ++DL P  +E+ +
Sbjct: 144 GDDLHQDLDPAEIEKAL 160


>gi|310828876|ref|YP_003961233.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
 gi|308740610|gb|ADO38270.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
          Length = 172

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I +L +AQE  G++S   +  ++   D+   ++  +ATFY QF+++PVG +  + +C
Sbjct: 36  GSLITILQKAQETYGYLSPDLMLYISRETDIPVAKIYGVATFYAQFRMNPVG-KHLIMLC 94

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C + G   + E     +  K      DG  + E V C G C  +P++MI  +TY  
Sbjct: 95  QGTACHVNGSSMIEEAVVEHLGIKEGETTEDGLFTLENVACLGCCSLSPVMMIDGETYGQ 154

Query: 160 LTPERLEEII 169
           LT +++  I+
Sbjct: 155 LTKDKVVNIL 164


>gi|188585873|ref|YP_001917418.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350560|gb|ACB84830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 158

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A IP+L   Q++ G++ +  +  V ++  +    +  I TFY+QF+L PVG    + V
Sbjct: 26  KGAAIPILQDIQKELGYIPKEVLPKVTSLTKIPESDLYSIVTFYSQFRLQPVGDNL-IHV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C L G E++      ++       + DG  + E+V C G C  AP++ I  +T+ 
Sbjct: 85  CHGTACHLAGAEEITNALVRELEIGDEGTSPDGKFTVEKVACLGCCSLAPVMTINGETHG 144

Query: 159 DLTPERLEEI 168
            LTP++  +I
Sbjct: 145 RLTPDKAVKI 154


>gi|238751245|ref|ZP_04612739.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
 gi|238710519|gb|EEQ02743.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
          Length = 187

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    +      Y  +R  +A I  L   Q++ GWV   AI  +A++L +    V
Sbjct: 33  FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASDV 90

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  + 
Sbjct: 91  EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|134301121|ref|YP_001114617.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134053821|gb|ABO51792.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
          Length = 177

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+I +L +AQ   G++ R     +A  L +    V  + +FY+ F   P G    + V
Sbjct: 36  KGALIEILHKAQHIFGYLPRDVQLFIARKLGIPGAEVYGVVSFYSYFTTKPSGKHT-ISV 94

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K++E  + ++  +      DG  + ++V C GAC  AP+VM+    Y 
Sbjct: 95  CMGTACFVRGADKIVEKFKERLGIESNETTEDGLFTIKDVRCIGACGLAPVVMVDDKVYG 154

Query: 159 DLTPERLEEIIDAF 172
            +  E +++II+ +
Sbjct: 155 RVKVEDVDDIINIY 168


>gi|157364375|ref|YP_001471142.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
 gi|157314979|gb|ABV34078.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
          Length = 164

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQE  G++S      +A +L +   +V  + TFY  F   P G +  V+VC  
Sbjct: 29  LISVLQKAQELFGYLSPEVQNHIAEMLKIPVSQVYGVVTFYNFFSTRPKG-KVQVKVCLG 87

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDL 160
           T C ++G +++ E    ++         DG  S   V C GAC  AP+V++G KD Y  +
Sbjct: 88  TACYVKGADRIFERFLEELATSAEEPTKDGQFSVHAVRCLGACSMAPVVLVGEKDFYGRV 147

Query: 161 TPERLEEIIDAF 172
            P+ +  II+ +
Sbjct: 148 KPDMVPRIIEKY 159


>gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
           aciditrophicus SB]
 gi|85721023|gb|ABC75966.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
           aciditrophicus SB]
          Length = 173

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E+IS+Y   +  SA + +L   QE+  ++ + A+ +V++ L +   R+ EIATFY  F
Sbjct: 23  IREIISKYDGEK--SAAVAVLQDLQEEFRYLPKEALTIVSDELQVPLSRIYEIATFYNVF 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G +  ++VC  T C ++G   L+      ++        D   + EEV C G C 
Sbjct: 81  SLKPRG-KYLIEVCAGTACHVQGGFNLMNRLERNLNISCGETTEDAMFTLEEVRCLGCCS 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+V I  + +  LT + +  I+  +
Sbjct: 140 LAPVVRIDGNIHPYLTQDEIPGILKNY 166


>gi|24372604|ref|NP_716646.1| NADH dehydrogenase subunit E [Shewanella oneidensis MR-1]
 gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subunit [Shewanella oneidensis MR-1]
          Length = 180

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S F  S+     +      Y   R  +A I  L   Q+  GWV   AI  +A  L +   
Sbjct: 24  SDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIAAELGIPAS 81

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++VC +  C + G E+L+   +  ++  P     DG  
Sbjct: 82  DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLMAGLKEVMNLAPGQTTPDGRF 140

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   V C G C   P +MI  DTY  L P  L + ++A+
Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPITLLKTLEAY 179


>gi|332296986|ref|YP_004438908.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
           brennaborense DSM 12168]
 gi|332180089|gb|AEE15777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
           brennaborense DSM 12168]
          Length = 160

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L + QE++G++S+ A + VA   +    RV  + TFY  F+    G +  V VC  
Sbjct: 27  LIMILHKVQEEQGFISKEAAQAVAERTNSPLARVYGVMTFYHFFKTQKPG-KNKVSVCLG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C L+G + LI+  R+ +  K    ++ DG  S E V C G C  AP++ +  D Y  L
Sbjct: 86  TACYLKGGQDLIDEARSILGLKAEDISTEDGLFSVEPVRCIGCCGLAPVLSVNGDVYGKL 145

Query: 161 TPERLEEIIDAF 172
           T  ++  I+D +
Sbjct: 146 TKNQIAGILDKY 157


>gi|148379809|ref|YP_001254350.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934211|ref|YP_001384107.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936196|ref|YP_001387647.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289293|emb|CAL83389.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930255|gb|ABS35755.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932110|gb|ABS37609.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
           str. Hall]
 gi|322806086|emb|CBZ03653.1| NAD-reducing hydrogenase subunit HoxE [Clostridium botulinum H04402
           065]
          Length = 159

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD++  +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDISVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++    NK++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDVLSEFENKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   ++++++ + 
Sbjct: 141 VYGHFTKNEVDKVLEEYG 158


>gi|113866667|ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
 gi|113525443|emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
          Length = 176

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+ +G++  AA+ V+A  L+++   V  + TFY  F+  P G R  VQVC 
Sbjct: 30  ALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVCR 88

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L E  +  +        +DG ++ E V C G C   P VM+G+  +  +
Sbjct: 89  AEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQCACGPAVMVGEQLHGYV 148

Query: 161 TPERLEEII 169
              R + ++
Sbjct: 149 DARRFDALV 157


>gi|266619024|ref|ZP_06111959.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
 gi|288869445|gb|EFD01744.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
          Length = 164

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI-- 73
           FS ++E    + EVIS    ++   A++P++ +AQ+  G++    IEV   I D   I  
Sbjct: 10  FSGTKEQEAALKEVISELKGTK--GALMPIMQKAQDIYGYLP---IEVQTMISDETGIPL 64

Query: 74  -RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            ++  +ATFY QF L P G +  V VC  T C ++G   + +     +         DG 
Sbjct: 65  EKIYGVATFYAQFALQPKG-KYQVSVCLGTACYVKGSGDIYDKLVELLGITNGECTPDGK 123

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S +   C GAC  AP++MI  + Y  LTP+ +  I+  +
Sbjct: 124 FSLDSCRCVGACGLAPVMMINGEVYGRLTPDDVPGILAKY 163


>gi|312878992|ref|ZP_07738792.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Aminomonas paucivorans DSM 12260]
 gi|310782283|gb|EFQ22681.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Aminomonas paucivorans DSM 12260]
          Length = 172

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQ   G++       VA  LD+   +V  + TFY+ F + P G +  V VC  
Sbjct: 27  LITVLHKAQGIFGYLPEEVQAFVAKKLDIPLAKVYGVVTFYSFFTMVPKG-KVVVSVCMG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E+++      +  K    ++DG  S + + C GAC  AP+V+I    Y  LT
Sbjct: 86  TACYVRGAEEVLAELEKVLGIKAGQVSADGHFSLDTLRCVGACGLAPVVIINGKVYGRLT 145

Query: 162 PERLEEIIDAF 172
           P ++  II  +
Sbjct: 146 PAQIPGIIAPY 156


>gi|170720891|ref|YP_001748579.1| formate dehydrogenase subunit gamma [Pseudomonas putida W619]
 gi|169758894|gb|ACA72210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
           W619]
          Length = 160

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++SR+  +    A++P+L   QE  G++  AA+  +A+ L+++   V  + +FY  F
Sbjct: 11  IQSILSRHQDT--PGALLPILHAVQESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RTAP-PARHTLRLCRAESCQSRGSEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            +P + +    +  LTPERL  +++
Sbjct: 128 CSPALELDGQVHARLTPERLRSLVN 152


>gi|92115244|ref|YP_575172.1| NADH-quinone oxidoreductase, E subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91798334|gb|ABE60473.1| NADH dehydrogenase subunit E [Chromohalobacter salexigens DSM 3043]
          Length = 171

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F   +E    +      YP    Q+A I  L   Q + GWV  AAI+ +A  L ++   
Sbjct: 16  AFVLHDEDRAAIAHERDHYP--HPQAASIEALKIVQRRHGWVPDAAIDAIARELGVSPAS 73

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+     PVG R  + +C ++ C L   E L +     +         DG  +
Sbjct: 74  VEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTDYEALRDAFFEHLGIGFGQTTPDGRFT 132

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              V C GAC   P +MIG DT+  + PE +  +++A++
Sbjct: 133 LLPVCCLGACDRGPALMIGDDTHGPVAPEEIPTLLEAYA 171


>gi|303238582|ref|ZP_07325116.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302593980|gb|EFL63694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 181

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P    F +E    +   I     +R   A+I +L +AQE  G++ R     VA  L + 
Sbjct: 11  KPVEREFPKEKYDELGAFIDNMETTR--GALIEILHKAQEIFGYLPRDVQLYVARKLGIP 68

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  + +FY+ F   P G +  + VC  T C +RG +K++E  ++++  +      D 
Sbjct: 69  GAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGSDKILEKFKDRLGIESNETTEDS 127

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             + ++V C GAC  AP+VM+    Y  +  E ++ II+ +
Sbjct: 128 LFTIKDVRCIGACGLAPVVMVDGKVYGRVKEEDVDNIINEY 168


>gi|168700383|ref|ZP_02732660.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246]
          Length = 160

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + SE+    +   I +YP  R Q+  +P L    ++   VS  AI  +A IL++    V 
Sbjct: 3   ALSEDMKNRIRAFIPKYP--RKQAVTLPALHLVHDELRTVSNEAIVEIAEILELHPSEVH 60

Query: 77  EIATFYTQF--QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  TFY  F  +   +GT   + VC    CMLRG  +LIE C +K+        +DG ++
Sbjct: 61  DTMTFYAFFKGEGEKLGT-TRLWVCRGLACMLRGAYELIEHCEHKLGVHCGQTTADGKVT 119

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            E  EC GAC  AP  +I      ++TPE+ +++I
Sbjct: 120 LEFAECIGACDGAPACLIEDVHAMNVTPEKADQLI 154


>gi|167772593|ref|ZP_02444646.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
           17241]
 gi|167665071|gb|EDS09201.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
           17241]
          Length = 164

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ + E    + EVI+ +   +   A++P+L  AQE  G++     +++++ LD+    +
Sbjct: 10  FTGTAEQEAKLREVIAAHKGQK--GALMPVLQGAQEIYGYLPIEVQKMISDGLDIPLEEI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L+P G +  + VC  T C ++G   +    + K+  +      DG  S 
Sbjct: 68  YGVATFYSQFTLNPKG-QYKISVCLGTACYVKGAGDIFNRLQEKLGIESGMCTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++ I  + Y  LT + ++ I+  +
Sbjct: 127 DACRCIGACGLAPVMTINDEVYGRLTVDDVDTILAKY 163


>gi|167750761|ref|ZP_02422888.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
 gi|167656196|gb|EDS00326.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
 gi|291557754|emb|CBL34871.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 166

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A++P+L +AQE  G++      ++A  + +   +V  ++TFY+QF L P G +  + V
Sbjct: 32  QGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKISV 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   +      K+         DG  S +   C GAC  AP++ +  D Y 
Sbjct: 91  CLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVYG 150

Query: 159 DLTPERLEEIIDAFS 173
            LT + ++ I+  ++
Sbjct: 151 KLTVDEIDGILAKYT 165


>gi|239904884|ref|YP_002951622.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
           [Desulfovibrio magneticus RS-1]
 gi|239794747|dbj|BAH73736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
           [Desulfovibrio magneticus RS-1]
          Length = 171

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G    + +
Sbjct: 39  EGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKGKHP-ISI 97

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  Y 
Sbjct: 98  CMGTACFVKGADKVVNAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKVYG 157

Query: 159 DLTPERLEEIIDAF 172
           ++TP ++++I+  F
Sbjct: 158 NVTPGQVKKILADF 171


>gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
          Length = 176

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+ +G++  AA+ V+A  L+++   V  + TFY  F+  P G R  VQVC 
Sbjct: 30  ALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVITFYHHFRQQPAG-RHVVQVCR 88

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L E  +  +        +DG ++ E V C G C   P VM+G+  +  +
Sbjct: 89  AEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQCACGPAVMVGEQLHGYV 148

Query: 161 TPERLEEII 169
              R + ++
Sbjct: 149 DARRFDALV 157


>gi|222053344|ref|YP_002535706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221562633|gb|ACM18605.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 150

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S++I +L+  Q +  W+ +  +E V+  L++   ++  I TFY  F L P G R  V VC
Sbjct: 18  SSLIQILIAIQSENHWLPKEVLERVSERLNVPMNQIQHITTFYKSFSLVPKG-RHEVHVC 76

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C +RG + +++   +    KP   + D   S E V C G C   P++++  D + +
Sbjct: 77  MGTACHVRGAQGVLDTVEDVTGIKPGETDVDLKFSLETVNCIGCCALGPVMVVDGDYHGN 136

Query: 160 LTPERLEEIIDAF 172
           L   ++E+++  +
Sbjct: 137 LAATQVEDVLKTY 149


>gi|309791452|ref|ZP_07685957.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
           trichoides DG6]
 gi|308226488|gb|EFO80211.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
           trichoides DG6]
          Length = 174

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L +AQE  G++S   +  +A  L +   RV  +ATFY  F L+P GT     +C 
Sbjct: 35  ALIEVLHKAQEIYGFLSPDLLVRIARSLHLPPSRVYGVATFYHFFSLAPQGTHT-CTICL 93

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C +RG  +L+    +       H   DG LS   V C GAC  AP V+I  +    +
Sbjct: 94  GTACYVRGAAELMARAEHAAGIAAGHTTPDGHLSLASVRCIGACGIAPAVVIDGNVTGHM 153

Query: 161 TPERLEEIIDAF 172
           TP+ +   + A 
Sbjct: 154 TPDDIAAQVTAL 165


>gi|16330690|ref|NP_441418.1| bidirectional hydrogenase complex protein HoxE [Synechocystis sp.
           PCC 6803]
 gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydrogenase subunit [Synechocystis sp. PCC
           6803]
          Length = 173

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P G    V V
Sbjct: 37  QDALIEILHKAQEIFGYLEEDVLLYVARGLKLPLSRVFGVATFYHLFSLKPSGKHTCV-V 95

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  T C ++G   L++    ++H KP     DG +S     C GAC  AP V+
Sbjct: 96  CLGTACYVKGAGDLLKTLDQEVHLKPGETTEDGQMSLVTARCIGACGIAPAVV 148


>gi|255524300|ref|ZP_05391258.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296185257|ref|ZP_06853667.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255511983|gb|EET88265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296050091|gb|EFG89515.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 160

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L  AQ+  G++       +AN LD++  +V  + TFY+ F + P G    + +
Sbjct: 25  EGSLINVLHEAQDMFGYLPEELQIFIANKLDISAAKVFGVVTFYSYFTIEPRGKHV-ISI 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G E ++E  R +++ K      DG  + + + C GAC  AP+V+I    Y 
Sbjct: 84  CMGTACFVKGAENVLEEFRKELNIKDGFSTEDGLFTIDILRCVGACGLAPVVVIDGMVYG 143

Query: 159 DLTPERLEEIIDAFS 173
            +  E ++ I+  ++
Sbjct: 144 KVKVEDVKGILSQYT 158


>gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG
           [Herminiimonas arsenicoxydans]
 gi|133740484|emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q   G++    +  +A+ L+++   V  + T+Y  F+  P G    +Q+C 
Sbjct: 25  ALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVHGVITYYHFFRQHPAGKHV-IQICR 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RGCE L++  +  +         DG  S E V C G C + P + I  D Y  +
Sbjct: 84  AEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEVVYCLGQCASGPAIQIDDDLYARV 143

Query: 161 TPERLEEIIDA 171
           + E+   +I A
Sbjct: 144 SKEKFNNLIQA 154


>gi|153814129|ref|ZP_01966797.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
 gi|317499934|ref|ZP_07958170.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087843|ref|ZP_08336768.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848525|gb|EDK25443.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
 gi|316898651|gb|EFV20686.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409538|gb|EGG88979.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           FS ++E    + +VI      +   A++P+L +AQ+  G++     +++++   +   ++
Sbjct: 10  FSGTKEQEEALMKVIHELKDEK--GALMPILQKAQDIYGYLPIEVQKMISDETGIPMEKI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF LSP G +  + VC  T C ++G   +      K+         DG  S 
Sbjct: 68  YGVATFYSQFTLSPKG-KYRISVCLGTACYVKGSGDIYNALMEKLGIVGGECTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++MI  + Y  LT + L++I+  +
Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDLDDILAKY 163


>gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
 gi|6647652|sp|O66842|NUOE_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
          Length = 160

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F EE    + E I+ +P  R   A++  L   Q   G++   +++ +A++L++   
Sbjct: 4   TEFEFPEELKTKLQEHINYFPKKR--QAILLCLHEIQNYYGYIPPESLKPLADMLELPLN 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +  FY  F       +  ++VC +  C L G  KL++   N +  KP     DG  
Sbjct: 62  HVEGVVAFYDMFDRED-KAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKF 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               V+C GAC  AP+ M+  D Y+  +  +L EI+  ++
Sbjct: 121 KIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT 160


>gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Candidatus Kuenenia
           stuttgartiensis]
          Length = 152

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A IP+L   QE+ G++    ++ V    ++    +  +ATFY QF+L+P G R  ++V
Sbjct: 17  KEASIPILQSIQEEYGYLPLDVLDQVCEESEITKSHLYGVATFYAQFKLTPKG-RNAIKV 75

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +  I   ++++         DG  S E V C G C  AP++MI +D + 
Sbjct: 76  CKGTACHVKGADITIVAMKDQLGIDIDQTTEDGAFSMETVACLGCCSLAPVIMINEDVFG 135

Query: 159 DLTPERL 165
             +  ++
Sbjct: 136 GFSSAKV 142


>gi|296124093|ref|YP_003631871.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
           limnophilus DSM 3776]
 gi|296016433|gb|ADG69672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
           limnophilus DSM 3776]
          Length = 159

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL--SP 89
           +YP  R  +  +P L    ++   VS  AIE +A +L++    V +  TFY  F+   +P
Sbjct: 18  KYPNKR--AVTLPALHLVHDELRHVSTGAIEEIAELLELHPSEVHDTMTFYQFFRTEENP 75

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G +  V VC +  C LRG E+L+     K+H  P     DG ++ E  EC G C  AP 
Sbjct: 76  LG-KHRVWVCRSISCGLRGGEELLAHMCEKLHVTPGGTTEDGKITLEFAECLGVCDGAPC 134

Query: 150 VMIGKDTYEDLTPERLEEII 169
           V++ +D   ++T E  +++I
Sbjct: 135 VLVDEDCVHNVTHEMADKLI 154


>gi|238784997|ref|ZP_04628995.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
           43970]
 gi|238714113|gb|EEQ06127.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
           43970]
          Length = 187

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    +      Y  +R  +A I  L   Q+  GWV   AI  +A +L +    V
Sbjct: 33  FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKGRGWVPDGAIHAIAEVLGIPASDV 90

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  + 
Sbjct: 91  EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|156741349|ref|YP_001431478.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus
           castenholzii DSM 13941]
 gi|156232677|gb|ABU57460.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 173

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L RAQE  G++S   +  +AN L +   RV  +ATFY  F L+P G  + V VC 
Sbjct: 39  ALIEVLHRAQELFGYLSNDLLLYIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCL 97

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C +RG   ++      +  +  H   DG LS E   C GAC  AP V+         
Sbjct: 98  GTACYVRGAAAILAAAEQTLGIRAGHTTPDGRLSLETARCLGACGIAPTVVFDGAITGHQ 157

Query: 161 TPERLE 166
           TPE+++
Sbjct: 158 TPEQVQ 163


>gi|313499697|gb|ADR61063.1| Formate dehydrogenase subunit gamma [Pseudomonas putida BIRD-1]
          Length = 160

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPILHAVQHEMGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG E L    R ++       ++DG++S   V C GAC  +P + +    +  L
Sbjct: 83  AESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACACSPALELDGQVHARL 142

Query: 161 TPERLEEIID 170
           TPERL ++++
Sbjct: 143 TPERLRDLVN 152


>gi|307297601|ref|ZP_07577407.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916861|gb|EFN47243.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 165

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 41  AVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            +I  L   Q+  G ++   A EV+  +      R+ E+ TFYT F     G +  V+VC
Sbjct: 27  VLINTLHAIQDHYGNFIPIEAAEVLKELTGTPLSRIYEVLTFYTMFSTHKRG-KYVVRVC 85

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            + PC + G + +I+  +N +         DG  + EE  C G C  +P++MI  + Y +
Sbjct: 86  KSLPCHVTGGQAVIDSLKNTLEIGFGETTEDGLFTLEETSCLGLCGVSPVMMINDEAYGN 145

Query: 160 LTPERLEEII 169
           LTP+R+ EII
Sbjct: 146 LTPKRVSEII 155


>gi|290475914|ref|YP_003468809.1| NADH dehydrogenase I subunit E [Xenorhabdus bovienii SS-2004]
 gi|289175242|emb|CBJ82045.1| NADH dehydrogenase I chain E [Xenorhabdus bovienii SS-2004]
          Length = 181

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  VA +L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 48  RAASIEALKIVQKQRGWVPDGAIYAVAEVLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 106

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       ++ +P     DG  +     C G C   P +MI +DT+ 
Sbjct: 107 CDSVVCHITGYQDVQAAIEMHLNIRPGQTTEDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 166

Query: 159 DLTPERLEEIIDAF 172
            + PE +E++++ +
Sbjct: 167 YVKPEEIEKLLEQY 180


>gi|307131811|ref|YP_003883827.1| NADH:ubiquinone oxidoreductase subunit E [Dickeya dadantii 3937]
 gi|306529340|gb|ADM99270.1| NADH:ubiquinone oxidoreductase, chain E [Dickeya dadantii 3937]
          Length = 176

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI+ ++ +L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 43  RAASIEALKIVQKHRGWVPDGAIDAISEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 101

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ KP     DG  +     C G C   P +MI +DT+ 
Sbjct: 102 CDSVVCHITGYQGIQAALERKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHS 161

Query: 159 DLTPERLEEIIDAF 172
            L P+ ++ +++ +
Sbjct: 162 QLKPDDIDSLLEQY 175


>gi|291530734|emb|CBK96319.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           70/3]
          Length = 143

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A++P+L +AQE  G++      ++A  + +   +V  ++TFY+QF L P G +  + V
Sbjct: 9   QGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKISV 67

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   +      K+         DG  S +   C GAC  AP++ +  D Y 
Sbjct: 68  CLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVYG 127

Query: 159 DLTPERLEEIIDAFS 173
            LT + ++ I+  ++
Sbjct: 128 KLTVDEIDGILAKYT 142


>gi|225572063|ref|ZP_03780927.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040498|gb|EEG50744.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
           10507]
          Length = 172

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+ +Y  ++   ++I +L + Q+  G++S  AI  ++    +   ++  +ATFY QF+L 
Sbjct: 23  VLEKY--AKVPGSLITILQKTQDIYGYLSMDAINYISERTGIMPAKIYGVATFYAQFRLQ 80

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P+G +  + +C  T C + G + + E     +  +      DG  +   V C G C  AP
Sbjct: 81  PIG-KYLIMLCKGTACHVNGADMIQEAVSEHLGIQDGETTEDGLFTLNAVACLGCCSLAP 139

Query: 149 MVMI----GKDTYEDLTPERLEEIIDAF 172
           ++M+    G++T+ +LT   + +I+D +
Sbjct: 140 VMMVKTVDGEETFGNLTKSSVTKILDDY 167


>gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
 gi|85723969|gb|ABC78912.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
          Length = 150

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++I ++  +   SA+I +L+  QE+  W+ + A++ V+  L +    V   ATFY  F
Sbjct: 6   IDQIIEKHHGA--SSALIQILLDIQEENHWLPKEALDRVSEKLQVPLTTVRHAATFYKVF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G R  V VC  T C +RG  ++++        KP   + D   S E V C G C 
Sbjct: 64  STVPKG-RHQVHVCLGTACHVRGANRVLDTVEEMTGIKPGETDLDLKFSLETVNCLGCCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P++ I    Y   TP +  +++  +
Sbjct: 123 LGPVMEIDGKVYGKATPSKTIDVLKKY 149


>gi|27904649|ref|NP_777775.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372476|sp|Q89AU3|NUOE_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|27904046|gb|AAO26880.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 171

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  + +  I +  +I  Y   R  S++I +L   Q+  GW+S   I  +A IL ++   +
Sbjct: 17  FKLTIQEKIEIFNIIKNYRTVR--SSLIEILKFVQKSYGWISNELITELACILKISKCDI 74

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            EIATFY+Q    P+G R  ++ C +  C + GCEK+       ++        D   + 
Sbjct: 75  EEIATFYSQIFRQPIG-RNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFKFTL 133

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             + C G C  +P +MI  D Y ++T   +  +++++
Sbjct: 134 LPICCLGNCDKSPTIMINDDLYSNVTEYSVIVLLESY 170


>gi|34496400|ref|NP_900615.1| NADH dehydrogenase subunit E [Chromobacterium violaceum ATCC 12472]
 gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase, chain E [Chromobacterium violaceum
           ATCC 12472]
          Length = 166

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA-------------IEVV 64
            S +S   ++  +++YP  + +SAV+  L  A ++     RAA             IE V
Sbjct: 2   LSAQSLALIDREVAKYPADQKRSAVMGALRIALDER----RAAGETPEARCLNPELIEFV 57

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           AN L +A +   E+ATFY  + + PVG +  + VC   PC L G     E    K+    
Sbjct: 58  ANYLGIAPVAAYEVATFYNMYDMKPVG-KFKITVCTNLPCALSGGVNAAEYISKKLGIAI 116

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEE 167
              ++DG  +  E EC GAC +AP++++        +TPE +++
Sbjct: 117 GETSADGMYTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDK 160


>gi|256422832|ref|YP_003123485.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037740|gb|ACU61284.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
          Length = 154

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S +E+ AI  +  I   P  R  + VI  L   Q+  GW+S  ++E +A+ L ++   V
Sbjct: 2   LSTTEKEAI--DHEIGLVPHKR--ATVIEALKIVQQHRGWISDDSVEEIAHYLGISPAEV 57

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY      PVG R  + +C +  C + G + L    + K+         D   + 
Sbjct: 58  DSVATFYNLIFRKPVG-RHVILLCDSISCYVMGYKSLYAALQRKLQISFGQTCPDNRFTL 116

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               C G C +AP +MI KD Y D+T E+L++I+  ++
Sbjct: 117 LPNACLGCCDHAPAMMIDKDLYRDITIEQLDDILKKYA 154


>gi|325278930|ref|YP_004251472.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324310739|gb|ADY31292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 158

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQ   G++      +VA+ L++   +V  + TFY+ F ++P G    + VC  
Sbjct: 28  LINVLHKAQHLFGYLPAEVQRIVADKLNIPVSKVYGVVTFYSFFTMTPKGEHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EK+++  +  ++        DG  S   + C GAC  AP+V+IG+  +  + 
Sbjct: 87  TACYVRGAEKVLDEFKRILNINVGETTPDGKYSLSSLRCVGACGLAPVVLIGEKVFGRVV 146

Query: 162 PERLEEII 169
           P  +E+I+
Sbjct: 147 PGDVEKIL 154


>gi|189467140|ref|ZP_03015925.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
           17393]
 gi|189435404|gb|EDV04389.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
           17393]
          Length = 158

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A  L++   RV  + TFYT F ++P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYTFFTMTPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
              ++++++
Sbjct: 147 AVDVKKVLE 155


>gi|226939460|ref|YP_002794533.1| NADH dehydrogenase subunit E [Laribacter hongkongensis HLHK9]
 gi|226714386|gb|ACO73524.1| NuoE [Laribacter hongkongensis HLHK9]
          Length = 166

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAV-----IPLLMRAQE----QEGWVSRAAIEVVANIL 68
            S E+   ++  +++YP  + +SAV     I L  R ++    +E  ++   +E VA+ L
Sbjct: 2   LSPEALQLIDREVAKYPADQARSAVMGALRIALTERREQGRTPEERCLTTELVEFVADYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +  +   E+ATFY  + + PVG +  + VC   PC LRG     +  + K+        
Sbjct: 62  GIPPVAAYEVATFYNMYDMKPVG-KYKLTVCTNLPCALRGGVDTADYLQKKLGIALGETT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
           +DG  +  E EC GAC +AP++++        +TPE +++ +  F
Sbjct: 121 ADGKFTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDQKLAEF 165


>gi|159027691|emb|CAO89556.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 169

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           QSA+I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P G    + V
Sbjct: 35  QSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-V 93

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C  T C ++G  K++E   N    K     +DG +S     C GAC  AP V+ 
Sbjct: 94  CMGTACYVKGSGKILEDIENSFDVKVGETTADGEISLVSARCIGACGIAPAVVF 147


>gi|160936106|ref|ZP_02083479.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440916|gb|EDP18640.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
           BAA-613]
          Length = 171

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 19  SEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           SEE+ +  + E+ + Y     + ++I +L  AQ   G++     +V+A+ LD++   V  
Sbjct: 13  SEEALLKRIGELAAEYRGK--EGSLIQVLHMAQGIYGYLPLEVQKVIADALDISLAEVSG 70

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+ F   P G    ++VC  T C +RG +K++E  +  +  +     +D   ++E 
Sbjct: 71  VVTFYSFFSTQPRGEHT-IRVCLGTACYVRGGKKIVERLKELLDVEIGETTADRRFTFEV 129

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
             C GAC  AP + I    Y+ + P++LE+I++ +   +G
Sbjct: 130 ARCIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEG 169


>gi|78223288|ref|YP_385035.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78194543|gb|ABB32310.1| tungsten-dependent benzoyl-CoA reductase-related protein bamG
           [Geobacter metallireducens GS-15]
          Length = 150

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++I ++      S++I +L+  Q +  W+ + A++ V   L +   R+  IATFY  F
Sbjct: 6   IDQIIDKHDGE--ASSLIQILLDIQSEHNWLPKEALKRVCERLQVPMSRITHIATFYKAF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  V VC  T C +RG +++++  +     K    +SD   S E V C G C 
Sbjct: 64  SLVPKG-RHQVHVCMGTACHVRGAQRVLDTVQEVTGVKSGETDSDLKFSVETVNCLGCCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
             P++ +    + ++ P ++  +++
Sbjct: 123 LGPVMEVDGKHHGNIAPSQIASVLN 147


>gi|85059576|ref|YP_455278.1| NADH dehydrogenase subunit E [Sodalis glossinidius str.
           'morsitans']
 gi|84780096|dbj|BAE74873.1| NADH dehydrogenase I subunit E [Sodalis glossinidius str.
           'morsitans']
          Length = 177

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S E    +      Y  +R  +A I  L   Q+  GWV   AI  +A +L +    
Sbjct: 22  TFELSREEREAIKHEKHHYEDAR--AASIEALKIVQKNRGWVPDGAIAAIAQVLGIPGSD 79

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ KP     DG  +
Sbjct: 80  VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQSLNIKPGQTTPDGRFT 138

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +M+  DT+  LTPE +  +++ +
Sbjct: 139 LLPTCCLGNCDKGPTMMVDDDTHLHLTPEGIGPLLEQY 176


>gi|301058585|ref|ZP_07199590.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
 gi|300447317|gb|EFK11077.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
          Length = 161

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E + R  P+R ++  +  L   QE + WV+   +  VA +L+MA   +  +ATFY+Q   
Sbjct: 12  EALLRIYPTR-RAVALEALKIVQEPKKWVTDEDLRDVAALLEMAPAELDSLATFYSQIFR 70

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            PVG    +++C    C + G   L E     +   P     D   +W  V C G C  A
Sbjct: 71  RPVGEHV-IRLCDGVSCWIMGETGLEERLSRLLSIGPGETTPDRRFTWLPVSCLGVCEQA 129

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFS 173
           P +MI  D Y  + PE L+ I++ ++
Sbjct: 130 PAIMIDDDLYTRIQPEDLDAILERYA 155


>gi|224535654|ref|ZP_03676193.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522727|gb|EEF91832.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 158

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A  L++   RV  + TFYT F ++P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYTFFTMTPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+  Y  L 
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGACGLAPVVMIGEKVYGRLQ 146

Query: 162 PERLEEIID 170
              ++++++
Sbjct: 147 AVDVKKVLE 155


>gi|26988907|ref|NP_744332.1| formate dehydrogenase subunit gamma [Pseudomonas putida KT2440]
 gi|24983718|gb|AAN67796.1|AE016411_1 formate dehydrogenase, gamma subunit, putative [Pseudomonas putida
           KT2440]
          Length = 160

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG E L    R ++       ++DG++S   V C GAC  +P + +    +  L
Sbjct: 83  AESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACACSPALELDGQVHARL 142

Query: 161 TPERLEEIID 170
           TPERL ++++
Sbjct: 143 TPERLRDLVN 152


>gi|33519941|ref|NP_878773.1| NADH dehydrogenase subunit E [Candidatus Blochmannia floridanus]
 gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [Candidatus Blochmannia floridanus]
          Length = 154

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E    +    + Y   R  +A I  L   Q+++GWVS  AI++V+ +L ++   V  
Sbjct: 3   FNKEELDIIRLECTHYENDR--AASIEALKIIQKRQGWVSDDAIKLVSQVLHISESDVEG 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           IATFY Q    PVG +  V+ C +  C + GCE++ +   + +  K  +   D   +   
Sbjct: 61  IATFYNQIFRQPVG-KYIVRYCDSNVCYINGCEQIQQTLESSLGIKIGNTTQDNKFTLLP 119

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C G C  +P++MI K  Y  + P  + +I+ ++
Sbjct: 120 TCCMGLCDKSPVLMIDKKIYSCIVPSDIMQILRSY 154


>gi|146307438|ref|YP_001187903.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
 gi|145575639|gb|ABP85171.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
          Length = 170

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q+  GWV   A E +  +L +
Sbjct: 11  IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKARGWVPDGASEAIGEVLGI 68

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++     ++        +D
Sbjct: 69  PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVLAEMHKQLGIGLGQTTAD 127

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              +   V C G C  AP +MI  DT+ D+ P+ +  +++A+
Sbjct: 128 NRFTLLPVCCLGNCDKAPALMIDDDTFGDVRPDGVAALLEAY 169


>gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum
           ferrodiazotrophum]
          Length = 624

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           AVIP+     E+E +VS  A+E++  I   +   +L + TFY  F     G R  ++VC 
Sbjct: 25  AVIPMFHYFMERENYVSPEALELIGQITGFSQSDLLGVGTFYQYFSFHKEG-RHIIRVCL 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            TPC+  G + L+   + ++         DG  S +  +C G C  AP ++I  + + ++
Sbjct: 84  ATPCVYCGGKGLLSALQKELGIGLDETTPDGVFSLKPAQCVGQCHEAPTLVIDTNIHNNV 143

Query: 161 TPERLEEIIDAFSTGQGDTIRPGPQI 186
           TP  +  ++  +  G+   + P P +
Sbjct: 144 TPGEIPALLKQYREGK---VSPQPAV 166


>gi|269837268|ref|YP_003319496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786531|gb|ACZ38674.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 180

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 49  AQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG 108
           AQ   GWV + A +V+A+ L ++  RV  + TFY  F+  P G +  + +C  T C + G
Sbjct: 43  AQNLYGWVPQPAAQVIADHLGVSVNRVYSLLTFYADFRTEPPG-KHFLLLCHGTACYVMG 101

Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-CQGACVNAPMVMIGKDTY-EDLTPERLE 166
            ++LI   R++          DG L+ + V  C G C  AP++ +   TY   LTP+RL 
Sbjct: 102 SQRLIATLRDEYGITNGEVTRDGELTLQVVNGCLGVCDLAPVIQVDHHTYCGRLTPDRLR 161

Query: 167 EIIDAFSTGQ 176
           E ++A   G+
Sbjct: 162 ETLEALKRGE 171


>gi|167761073|ref|ZP_02433200.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
 gi|167661307|gb|EDS05437.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
          Length = 161

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I  Y  S  Q   + ++   Q    +V R  +E +A  L      +  +ATFY   
Sbjct: 12  IERIIHSYECS--QRYALAIMQDMQRTYQYVPREGLEALAEYLGCPVSALYAMATFYKAL 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G    ++ C  T C +RG   LI+    ++  +P     DG  S+E V C G+C 
Sbjct: 70  SLVPKGEHT-IKCCDGTACHIRGASTLIDGIERELGIRPGETTKDGLFSFETVNCLGSCA 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            AP++++    Y  +T E+L EII+    G
Sbjct: 129 LAPVLVVDDVYYGKVTLEKLREIIEDVRKG 158


>gi|56387325|gb|AAV86074.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 158

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++++Y    C   +I +L   QE+  ++ + A   ++  L M+  ++  +ATFY  F L 
Sbjct: 13  ILTKYNHDACN--IIAILQDTQEKYRYLPKEAFVYLSEKLGMSRAKIYSVATFYENFSLE 70

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNA 147
           P G +  +++C  T C +R    +++  R +++       +D  + + E V C GAC  A
Sbjct: 71  PKG-KFVIKICDGTACHVRKSIPILDKLRKELNLSEAKTTTDDLIFTLETVSCLGACGLA 129

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P + +    Y  +TPE+  E+++ F
Sbjct: 130 PAMTVNDKVYGSMTPEKAMELLNTF 154


>gi|256544553|ref|ZP_05471926.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Anaerococcus vaginalis ATCC 51170]
 gi|256399878|gb|EEU13482.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Anaerococcus vaginalis ATCC 51170]
          Length = 177

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L  AQ   G++    +E+++N L++    V  +ATFY+QF   P G +  + +
Sbjct: 44  KGPLMPILQEAQSIFGYLPDEMMELISNKLNIPLAEVYGVATFYSQFTFVPKG-KTDIHI 102

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   ++     ++  K      DG  S  E  C G C  AP+V I  +  E
Sbjct: 103 CLGTACYVKGAADILNEFEQRLGIKKGETTPDGKFSISETRCLGNCGAAPVVEINGEQVE 162

Query: 159 DLTPERLEEIID 170
             T + + ++++
Sbjct: 163 HFTKDDVSKVLE 174


>gi|269791765|ref|YP_003316669.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099400|gb|ACZ18387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 174

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E I + P  +    +I +L +AQE  G++       VA  L++   +V  + TFY+ F
Sbjct: 17  LEEFIDKLPNKK--GELITVLHKAQEIFGYLPEEVQAFVARKLEIPLAKVYGVVTFYSFF 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            + P G  A V VC  T C +RG E ++      +  K    + DG  S + + C GAC 
Sbjct: 75  TMEPKGKVA-VSVCMGTACYVRGAEDVLHELEKAMGVKAGKVSEDGYFSLDTLRCVGACG 133

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP+V++    +  +TP  +  I+D +
Sbjct: 134 LAPVVIVNGRVFGRVTPADVPGIVDQY 160


>gi|303245640|ref|ZP_07331923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|466363|gb|AAA87054.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
 gi|302492903|gb|EFL52768.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 171

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 73/134 (54%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G +  + V
Sbjct: 39  EGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KYPISV 97

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  Y 
Sbjct: 98  CMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKVYG 157

Query: 159 DLTPERLEEIIDAF 172
           ++TP ++++I+  +
Sbjct: 158 NVTPGQVKKILAEY 171


>gi|325262529|ref|ZP_08129266.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
 gi|324032361|gb|EGB93639.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
          Length = 164

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           LA+++  P  FS ++E    + +VI+     +   A++P+L +AQ+  G++      +++
Sbjct: 2   LAKKQTVP--FSGTKEQEESLLKVITELKDEK--GALMPILQKAQDIYGYLPIEVQTIIS 57

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           N   +   ++  + TFY+QF LSP G +  + VC  T C ++G   +      K+     
Sbjct: 58  NETGIPLEKIYGVVTFYSQFTLSPKG-KYQISVCLGTACYVKGSGDIYNALMEKLGIVGG 116

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               DG  S +   C GAC  AP++M+  + Y  LT + +++I+  +
Sbjct: 117 ECTPDGKYSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163


>gi|288818980|ref|YP_003433328.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288788380|dbj|BAI70127.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752565|gb|ADO46048.1| formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 153

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A+IP+L   QE++G++    ++++++ L+++   V  + TFY+ F+L P G    ++V
Sbjct: 17  KNALIPILHIIQERQGYIPEYTVDLLSSELNLSKAEVWGVITFYSDFRLKPPGKHI-IKV 75

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C+  G  K+ E  +  +         DG  + E V C G C  AP VM+    Y 
Sbjct: 76  CRSEACLAMGGRKVQEHIKCILGIDFGQTTHDGIFTLEGVYCFGNCACAPSVMVDGKLYG 135

Query: 159 DLTPERLEEIID 170
              PER++ I++
Sbjct: 136 RAFPERIDMIME 147


>gi|255526811|ref|ZP_05393710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296186423|ref|ZP_06854826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255509490|gb|EET85831.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296048870|gb|EFG88301.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 159

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L +AQ   G++S+   + VA  LD+   +V  + TFY+ F   P G +  + +
Sbjct: 25  KGSLISVLHKAQNLFGYLSKDVQKFVAKKLDIPVSKVNGVVTFYSYFTEEPTG-KYVINI 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   ++E    K+  +     SDG  + + + C GAC  AP+V +    Y 
Sbjct: 84  CMGTACFVKGSGDVLEEFERKLDIEVGETTSDGKFTIQVLRCVGACGLAPVVTVNDKVYG 143

Query: 159 DLTPERLEEIIDAF 172
             T + +++I+D +
Sbjct: 144 HFTKQMVDKILDEY 157


>gi|328543745|ref|YP_004303854.1| ATP synthase subunit E [polymorphum gilvum SL003B-26A1]
 gi|326413489|gb|ADZ70552.1| ATP synthase subunit E [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+ R+  +  +  ++P+L   QE+ GW+  AA+  +A  L++    V  +ATFY  F+  
Sbjct: 15  VVERHATT--EGPLLPILHEVQEEFGWLPPAALRTIAEGLNLGRAEVHGVATFYHDFRTE 72

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G R  +++C    C   G E++ E  R ++        +DG+++ E V C G C  AP
Sbjct: 73  PAG-RHRLKICRAEACQAMGGERIAERARAELGLDWHETAADGSVTLEPVYCLGLCACAP 131

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
             M+       L  +R   I+    T
Sbjct: 132 AAMVDDRLEGRLDADRFARILAEVRT 157


>gi|256827980|ref|YP_003156708.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577156|gb|ACU88292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 175

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q ++I +L   Q+  G+     I  +A+ ++     V  + +FY+ F L P G R +++V
Sbjct: 42  QGSLITVLRLCQDIVGYFPLELIRYIASGMNQPLSTVYGVISFYSLFSLKPKG-RHNIRV 100

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  ++++    +   K       G  S E V C GAC  AP++++ +DT+ 
Sbjct: 101 CTGTACYVRGVREVLDRVERRFGVKAGGTCESGRFSLEPVRCLGACGLAPVMVVDRDTHG 160

Query: 159 DLTPERLEEIIDAF 172
            +TP+   EI++ +
Sbjct: 161 GVTPDSACEILEGY 174


>gi|167761223|ref|ZP_02433350.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
 gi|167660889|gb|EDS05019.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
          Length = 164

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ ++E    + EVI      +   +++P+L RAQ+  G++     ++++N   +   ++
Sbjct: 10  FNGTKEQEKELLEVIHELKDEK--GSLMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+QF L+P G R  + VC  T C ++G   +      K+         DG  S 
Sbjct: 68  YGVVTFYSQFNLNPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++M+  + Y  LT + +++I+  +
Sbjct: 127 DACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163


>gi|94309498|ref|YP_582708.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cupriavidus
           metallidurans CH34]
 gi|93353350|gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
           metallidurans CH34]
          Length = 169

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q+ +G++   A+ VVA  L+++   V  + TFY  F+  P G R  VQVC
Sbjct: 30  GALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHFRERPAG-RTVVQVC 88

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G + L    R  +        +DG  + E V C G C   P + IG   +  
Sbjct: 89  RAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMTIGDRLHGR 148

Query: 160 LTPERLEEIIDA 171
           +  +R +++IDA
Sbjct: 149 VDMQRFDKLIDA 160


>gi|158320024|ref|YP_001512531.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158140223|gb|ABW18535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 158

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++++ +Y  +   S++I +L   Q    ++   A++ VA  +DM+  R+  IATFY  F
Sbjct: 10  IDQILMKYGNN--PSSIITMLQEIQGVYRYLPEEALDYVAASMDMSASRIFGIATFYENF 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGAC 144
            L P G +  +++C  T C +R    ++     ++     +H   D   + E V C GAC
Sbjct: 68  SLKPKG-KFIIKICDGTACHVRKSIPILNTLYKELSLNSEMHTTEDLMFTVETVSCLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             AP++ +    Y  +TPE   E+++  
Sbjct: 127 GLAPVITVNDKVYGKMTPESTVELLNTL 154


>gi|187477323|ref|YP_785347.1| formate dehydrogenase subunit gamma [Bordetella avium 197N]
 gi|115421909|emb|CAJ48429.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella avium
           197N]
          Length = 155

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++PLL   QE+ G +    + V+A  L ++   V  + TFY  F+  P G R  +Q+C
Sbjct: 21  GALLPLLHALQEELGCIPPETVGVLAEALSLSRAEVHGVITFYPHFRTEPAG-RHVLQIC 79

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G + L    + ++      R++DG  + E   C G C  +P +M+    +  
Sbjct: 80  RAEACQAMGGDALAAHAQARLGCDFHARSADGAFTLEPAYCLGLCAQSPALMLDGRPHAR 139

Query: 160 LTPERLEEIID 170
           +TP RL+ +ID
Sbjct: 140 MTPARLDRLID 150


>gi|145298720|ref|YP_001141561.1| NADH dehydrogenase subunit E [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851492|gb|ABO89813.1| NADH dehydrogenase I, E subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 188

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A  L +    V  +ATFY+Q    PVG R  ++V
Sbjct: 55  RAASIEALKIVQQARGWVPDGAIYAIATELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 113

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G E L+   +  +   P   ++DG  +   V C G C   P +MI  DTY 
Sbjct: 114 CDSMVCYINGHEGLLAGLKEVMDLAPGQTSADGRFTLLPVCCLGNCDKGPALMIDDDTYG 173

Query: 159 DLTPERLEEIIDAF 172
            L    L + ++A+
Sbjct: 174 GLDAATLIKTLEAY 187


>gi|148548761|ref|YP_001268863.1| formate dehydrogenase subunit gamma [Pseudomonas putida F1]
 gi|148512819|gb|ABQ79679.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas putida
           F1]
          Length = 160

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG E L    R ++       ++DG +S   V C GAC  +P + +    +  L
Sbjct: 83  AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142

Query: 161 TPERLEEIID 170
           TPERL ++++
Sbjct: 143 TPERLRDLVN 152


>gi|163857996|ref|YP_001632294.1| formate dehydrogenase subunit gamma [Bordetella petrii DSM 12804]
 gi|163261724|emb|CAP44026.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           petrii]
          Length = 188

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G +   A+  +A  L+++   V  + TFY  F+  P G R  ++VC 
Sbjct: 50  ALLPILHAVQDELGCIPADAVPAIAEALNLSRAEVHGVLTFYPHFRTEPAG-RHVLEVCR 108

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E+L E  R  +       ++DG ++ E V C G C  +P VM+    +  +
Sbjct: 109 AESCQAMGGERLAEHARETLGCDFHGTSADGAVTLEPVYCLGLCAQSPAVMLDGQPHARV 168

Query: 161 TPERLEEIIDAFSTGQGDTIRP 182
           TP++L  ++   +  Q D  +P
Sbjct: 169 TPDKLGRLLSRAT--QSDEAQP 188


>gi|167752243|ref|ZP_02424370.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
 gi|167660484|gb|EDS04614.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
          Length = 164

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L   Q+  G++ +   E++A  L ++  RV  + +FY+ F + P G +  + VC  
Sbjct: 28  LINILHGVQDTLGYLPKEVQELIALELGISAARVYGVVSFYSFFTMKPKG-KYPISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EK+++  R ++  +      DG  S + + C GAC  AP+VMIG   Y  L 
Sbjct: 87  TACYVRGGEKVLDEFRRQLGIEVGGTTPDGLFSLDSLRCVGACGLAPVVMIGPRVYGRLK 146

Query: 162 PERLEEIID 170
              ++ I+D
Sbjct: 147 VTDVKGILD 155


>gi|134299513|ref|YP_001113009.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052213|gb|ABO50184.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
          Length = 163

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S +I +L   Q   G++ +  +  +A  + ++   VL +ATFY QF L P G    ++VC
Sbjct: 24  SHLIGILQEVQSDYGYLPKEVLTYIATSMGISPATVLGVATFYAQFSLIPKGKYV-IRVC 82

Query: 100 GTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
             T C +RG E ++   R ++    +KP     D   + E V C GAC  AP+V+  ++ 
Sbjct: 83  DGTACHVRGSEPIMMALRKELGINTEKP--TTDDLMFTLETVSCLGACGLAPVVVADEEV 140

Query: 157 YEDLTPERLEEII 169
           +  +TP+ + EI+
Sbjct: 141 HGQMTPDGILEIV 153


>gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
           6192]
 gi|306532784|gb|ADN02318.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
           6192]
          Length = 160

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L + QE  G++ R     +A ++D+   ++  + TFY  F+L   G +  + VC  
Sbjct: 27  LIMVLHKTQEIYGYIPREIAMELAKVIDVPLAKIYGVITFYHFFKLRKPG-KHRISVCMG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C L+G E +++   + +   P     DG  S+E V C G C  AP+VM+  + Y  +T
Sbjct: 86  TACFLKGGEDILKELEDLLGVGPNTATEDGLFSFEAVRCLGCCGLAPVVMVDGEVYGKVT 145

Query: 162 PERLEEIIDAF 172
            + L  I+  +
Sbjct: 146 KDDLPGILAKY 156


>gi|253989003|ref|YP_003040359.1| NADH dehydrogenase subunit E [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780453|emb|CAQ83615.1| nadh dehydrogenase i chain e (nadh-ubiquinone oxidoreductase chain
           5 (nuo5) [Photorhabdus asymbiotica]
          Length = 182

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  S E    + +    Y   R  +A I  L   Q+  GWV   AI  +A++L +   
Sbjct: 26  ANFVLSVEEHDAIEQEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVLGIPAS 83

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P     DG  
Sbjct: 84  DVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTTQDGRF 142

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI  DT+  + PE +E++++ +
Sbjct: 143 TLLPTCCLGNCDKGPTMMIDDDTHSSVKPEEIEKLLEQY 181


>gi|254520091|ref|ZP_05132147.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226913840|gb|EEH99041.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 173

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S++I +L  AQ   G++ R   E +A  L++   +V  + TFY+ F   P G    + +
Sbjct: 37  ESSLISVLHHAQGLYGYLGREVQEYIAYRLNIPVSKVYGVITFYSYFSTEPKGKYV-ISI 95

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   ++E  +  +  K     +DG  + + + C G+C  AP+V++    Y 
Sbjct: 96  CTGTACFVRGACDILEDFKKILGIKEGETTNDGLFTLDTLRCVGSCAIAPVVLVNDKVYG 155

Query: 159 DLTPERLEEIID 170
             T  ++ E+I+
Sbjct: 156 YFTKPQVNELIN 167


>gi|166362849|ref|YP_001655122.1| bidirectional hydrogenase complex protein HoxE [Microcystis
           aeruginosa NIES-843]
 gi|166085222|dbj|BAF99929.1| putative bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
          Length = 169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           QSA+I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P G    + +
Sbjct: 35  QSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-I 93

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C  T C ++G  K++E   N    K     +DG +S     C GAC  AP V+ 
Sbjct: 94  CMGTACYVKGSGKILEDIENAFDVKVGETTADGEISLVSARCIGACGIAPAVVF 147


>gi|212712279|ref|ZP_03320407.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
           30120]
 gi|212685025|gb|EEB44553.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
           30120]
          Length = 179

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 11  FQP---SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           F+P     F  +E     +      Y  +R  +A I  L   Q+  GWV   AI  +A++
Sbjct: 17  FEPQVNHGFVLTEHERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADV 74

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+Q    PVG R  ++ C +  C + G + L      +++ +P   
Sbjct: 75  LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQT 133

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +DG  +     C G C   P +MI +DT+  + PE ++++++ +
Sbjct: 134 TADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPENIQKLLEQY 178


>gi|73540323|ref|YP_294843.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
 gi|72117736|gb|AAZ59999.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 179

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q+  G++   A+ V+A  L+++   V  + TFY  F+  P G R  VQVC
Sbjct: 32  GALLPILHEIQDTHGYIPDTAVPVIAKALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G E L E  +  +        +DG ++ E V C G C   P VM+G+  +  
Sbjct: 91  RAEACQSVGAEALAEHAKRALGCDFHETTADGAVTLEPVYCLGQCACGPAVMMGEQLHGY 150

Query: 160 LTPERLEEII 169
           +  +R + ++
Sbjct: 151 VDAKRFDVLV 160


>gi|217968067|ref|YP_002353573.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
           6724]
 gi|217337166|gb|ACK42959.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
           6724]
          Length = 153

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           E++  +P  R    +I +L   Q      +++   I+  A  L++    V  +A+FY+ F
Sbjct: 6   EILESFP--RDPDYIIEILHELQNNNPYNYLTPEDIKACAEYLELPVSYVEGVASFYSMF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  +++C + PC L G E L+E    K++ K      D   + E   C G C 
Sbjct: 64  SLKPRG-RYVIRLCDSPPCHLVGSESLLEYLERKLNIKVGETTEDRVFTLEVTSCLGVCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP +MI  + Y +LT E++++I++
Sbjct: 123 VAPAMMINDEVYGNLTFEKIDKILE 147


>gi|70733836|ref|YP_257476.1| formate dehydrogenase subunit gamma [Pseudomonas fluorescens Pf-5]
 gi|68348135|gb|AAY95741.1| formate dehydrogenase, gamma subunit [Pseudomonas fluorescens Pf-5]
          Length = 158

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++ ++ R+  S    A++P+L + QE+ G++   AI  +A+ L+++   V  + +FY  
Sbjct: 10  LIHRLLERHKDS--PGALLPILHQIQEELGYIPDPAIPEIAHSLNLSQAEVRGVISFYHD 67

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+ +P   R  +++C    C  RG E+L    R ++       ++DG +S   V C GAC
Sbjct: 68  FRSAP-PARHILRLCRAESCQSRGAEQLAAQLRERLQLDDHGSSADGNISLRPVYCLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
             +P + +    +  L+ ERL+ ++D+
Sbjct: 127 ACSPALELDGQLHARLSAERLDALLDS 153


>gi|315186944|gb|EFU20702.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Spirochaeta thermophila DSM 6578]
          Length = 160

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L + QE  G++ R     +A +LD+   ++  + TFY  F+L   G +  + VC  
Sbjct: 27  LIMVLHKTQEIYGYIPREIAMELAKVLDVPLAKIYGVITFYHFFKLRKPG-KHRISVCLG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C L+G E +++   + +   P     DG  S+E V C G C  AP++M+  + Y  +T
Sbjct: 86  TACFLKGGEDILKELEDLLGVGPNTATEDGLFSFEAVRCLGCCGLAPVLMVDGEVYGKVT 145

Query: 162 PERLEEIIDAF 172
            + L  I+  +
Sbjct: 146 KDDLPGILAKY 156


>gi|283853100|ref|ZP_06370355.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283571498|gb|EFC19503.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 171

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G +  + V
Sbjct: 39  QGHLVTVLHKAQSVFGYLPIEVQQFVADYMEVPLAQVYGVVSFYTFFTMVPKG-KHPISV 97

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  Y 
Sbjct: 98  CMGTACFVKGADKVVRAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKVYG 157

Query: 159 DLTPERLEEII 169
           ++T  ++++I+
Sbjct: 158 NVTAGQVKKIL 168


>gi|117620389|ref|YP_856315.1| NADH dehydrogenase subunit E [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561796|gb|ABK38744.1| NADH-quinone oxidoreductase chain e [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 180

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A  L +    V  +ATFY+Q    PVG R  ++V
Sbjct: 47  RAASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEGVATFYSQIFRQPVG-RHIIRV 105

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G E+L+   +  +   P   ++DG  +   V C G C   P +MI  DTY 
Sbjct: 106 CDSMVCYINGHEQLLAGLKEVMDLAPGQTSADGRFTLLPVCCLGNCDKGPALMIDDDTYG 165

Query: 159 DLTPERLEEIIDAF 172
            L    L + ++A+
Sbjct: 166 GLDAVSLLKTLEAY 179


>gi|293376705|ref|ZP_06622928.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sanguinis PC909]
 gi|325845177|ref|ZP_08168485.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sp. HGF1]
 gi|292644662|gb|EFF62749.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sanguinis PC909]
 gi|325488773|gb|EGC91174.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sp. HGF1]
          Length = 158

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
            ++P+L  AQ+  G++     + ++N   ++  R+  + TFY+QF   P G    + VC 
Sbjct: 27  GLMPILHEAQDIFGYIPLEVQKFISNRTGISVSRIHGVVTFYSQFSTEPKGENV-IGVCL 85

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G + +++  + ++  +P    SDG  S     C GAC  AP++ I  D Y  +
Sbjct: 86  GTACYVKGAQAILQKFKEELGIEPEQTTSDGKFSLVATRCIGACGLAPVITINDDVYGKM 145

Query: 161 TPERLEEIIDAFS 173
              ++  I+  ++
Sbjct: 146 DASQVSSILKKYN 158


>gi|126656035|ref|ZP_01727419.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
           CCY0110]
 gi|126622315|gb|EAZ93021.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
           CCY0110]
          Length = 171

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +E VA+ L +   RV  +ATFY  F L P G    V V
Sbjct: 35  QDALIEILHKAQEAFGYLEPDILEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHTCV-V 93

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++  K     +D  +S     C GAC  AP ++   +   
Sbjct: 94  CLGTACYVKGSDKVLTALQQELGIKSGETTTDKQISLLSARCLGACGIAPAIVFDGEVAG 153

Query: 159 DLTPERLEEIIDAFST 174
              PE   E I  + T
Sbjct: 154 KQMPENALEKIKTWQT 169


>gi|326402926|ref|YP_004283007.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|325049787|dbj|BAJ80125.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
          Length = 165

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ G VS   +  VA +L M    +  +ATFY      PVG R  + +
Sbjct: 32  RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G      + R ++  +P     DG  +   + C G C  AP +MIG D + 
Sbjct: 91  CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150

Query: 159 DLTPERLEEIIDAF 172
           +LTPER++ I++ +
Sbjct: 151 NLTPERIDAILEQY 164


>gi|317052149|ref|YP_004113265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
           indicum S5]
 gi|316947233|gb|ADU66709.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
           indicum S5]
          Length = 173

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P S +  +     V   + RY  +R   A+I +L  AQE  G++    +  VA  LD+  
Sbjct: 8   PGSATTDDPRIRLVERTLKRY--ARQPDALIEVLHTAQEAYGYLPEGILTHVARELDLPE 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V+ +ATFY  F L P G  + + VC  T C ++G  +++     +          DG 
Sbjct: 66  SQVMGVATFYHFFSLRPRGEHSCI-VCTGTACYVKGAGEIVSAVEKEYGITAGQTTPDGK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIIDAFSTGQGD 178
           LS     C G C  APM+ +  +     TPE  LE++    + G+G+
Sbjct: 125 LSLGAARCLGNCSLAPMLTLDDEVLGRETPEGTLEKLRQHIAAGRGE 171


>gi|37526974|ref|NP_930318.1| NADH dehydrogenase subunit E [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain
           5) (NUO5) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 182

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F  S E    +      Y   R  +A I  L   Q+  GWV   AI  +A++L +   
Sbjct: 26  ADFVLSTEEHDAIEHEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVLGIPAS 83

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P     DG  
Sbjct: 84  DVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTTKDGRF 142

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI  DT+  + PE +E++++ +
Sbjct: 143 TLLPTCCLGNCDKGPTMMIDDDTHSSVRPEEIEKLLEQY 181


>gi|300023971|ref|YP_003756582.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525792|gb|ADJ24261.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 176

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +    Q   G+V    + ++A  L+ +   +  + TFY +F   PVG    V++C  
Sbjct: 41  LLEIFHEMQHDLGYVPEETLPIIAKALNRSRAEIYGVLTFYHEFHRHPVGKHV-VKICRA 99

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G ++L +   +K++       +DG ++ E+V C G C  +P VM+G+  Y  + 
Sbjct: 100 EACQSMGTDELCQHAESKLNVPLGGTTADGAVTIEQVFCLGNCALSPAVMVGEKLYGRVD 159

Query: 162 PERLEEII 169
           P+R +EII
Sbjct: 160 PKRFDEII 167


>gi|197116577|ref|YP_002137004.1| NADH dehydrogenase subunit E [Geobacter bemidjiensis Bem]
 gi|197085937|gb|ACH37208.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
          Length = 156

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 26  VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++E + +    R   A+ P      ++   Q   GW++  A+   A++L ++ ++V E+A
Sbjct: 2   ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAASLLGLSPLQVEELA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY      PVG +  + VC +  C    C+ +IE  + ++  +     +DG  +     
Sbjct: 62  TFYEMIYRRPVGKKV-IHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           C G C ++P + +G   Y  LTP  ++EI++
Sbjct: 121 CMGRCGDSPAMSVGGTPYGHLTPHLVDEILE 151


>gi|301061250|ref|ZP_07202032.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
 gi|300444569|gb|EFK08552.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
          Length = 165

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           I ++   Q+  G++S  A+   A++L M  + + E+ATFY      PVGT   + VC ++
Sbjct: 26  INVMFALQKCYGYLSDEAVAEAAHMLGMTTLEIEELATFYDFLYREPVGTYV-IHVCDSS 84

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
            C + G E +++    K+   P    +DG  +   V C G C +AP+++I    Y  LTP
Sbjct: 85  ICWMYGEETVMDYLVKKLAITPGETTADGLFTILPVCCVGYCDHAPVMLINGKPYGPLTP 144

Query: 163 ERLEEIID 170
           E ++ I++
Sbjct: 145 EYIDRILE 152


>gi|183599633|ref|ZP_02961126.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
 gi|188021885|gb|EDU59925.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
          Length = 180

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A +L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 47  RAASIEALKIVQKNRGWVEDGAIYAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHIIRY 105

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + L     N+++ +P    +DG  +     C G C   P +MI +DT+ 
Sbjct: 106 CDSVVCHITGYQGLEAEIINQLNIRPGQTTADGRFTLLPTCCLGNCDKGPTMMIDEDTHS 165

Query: 159 DLTPERLEEIIDAF 172
            + PE ++++++ +
Sbjct: 166 YVQPEDIKKLLEQY 179


>gi|188997421|ref|YP_001931672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932488|gb|ACD67118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 160

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           ++N L++   ++  I +FY  F++     R H++VC   PC + GC+KLIE+      ++
Sbjct: 50  LSNYLEVPLNQIERIVSFYDMFRVKR-NARHHIRVCKNLPCHIMGCKKLIELFEKLTCEE 108

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAFS 173
               + +G    E VEC GAC  AP  MI  D Y+   +T E+L EI+  ++
Sbjct: 109 RNQESKNGRFYIETVECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKYT 160


>gi|172037234|ref|YP_001803735.1| NADH dehydrogenase I subunit E [Cyanothece sp. ATCC 51142]
 gi|171698688|gb|ACB51669.1| probable NADH dehydrogenase I chain E [Cyanothece sp. ATCC 51142]
          Length = 173

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +E VA+ L +   RV  +ATFY  F L P G    V V
Sbjct: 35  QDALIEILHKAQEAFGYLEPDVLEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHTCV-V 93

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----G 153
           C  T C ++G +K++   + ++  K     +D  +S     C GAC  AP V+      G
Sbjct: 94  CLGTACYVKGSDKILAALQQELGIKSGETTADKQISLLSARCLGACGIAPAVVFDGEVTG 153

Query: 154 KDTYEDL 160
           K T E++
Sbjct: 154 KQTAENV 160


>gi|301063637|ref|ZP_07204151.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300442285|gb|EFK06536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 175

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L   Q    ++ +  +  +A  + +   R+  +ATFY+ F L P G    + +C  
Sbjct: 37  LIMILQAIQAAYNYLPQPVLAYLAEKIGIPLSRIYGVATFYSTFSLEPRGKNI-INICLG 95

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG  K+++   + +H        DG  + E V C G C   P+V I +D Y  + 
Sbjct: 96  TACHVRGAGKVLQRIEDTLHVDNGKTTEDGQFTLESVRCIGCCSLGPVVKINEDVYGRIG 155

Query: 162 PERLEEIIDAFS 173
            E L++I+D + 
Sbjct: 156 SEDLDKILDHYG 167


>gi|148269833|ref|YP_001244293.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
           RKU-1]
 gi|170288519|ref|YP_001738757.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
 gi|281412284|ref|YP_003346363.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
           RKU-10]
 gi|147735377|gb|ABQ46717.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
           RKU-1]
 gi|170176022|gb|ACB09074.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
 gi|281373387|gb|ADA66949.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
           RKU-10]
          Length = 157

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 53  EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL 112
           + ++   A E+VA  L +   RV E+ TFYT F   P G +  ++VC + PC +    ++
Sbjct: 34  DNFIPPEAAEIVAEELGVPLSRVYEVLTFYTMFSTKPKG-KYVIRVCESLPCHVENGREV 92

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           ++  +  +        SDG  + E   C G C  AP++M+  + Y ++TP R++++ID
Sbjct: 93  VKALKEILKIDFGQTTSDGLFTLEMTSCLGLCGVAPVIMVNDEYYGNMTPGRVKDLID 150


>gi|148260121|ref|YP_001234248.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
 gi|146401802|gb|ABQ30329.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
          Length = 165

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ G VS   +  VA +L M    +  +ATFY      PVG R  + +
Sbjct: 32  RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G      + R ++  +P     DG  +   + C G C  AP +MIG D + 
Sbjct: 91  CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150

Query: 159 DLTPERLEEIIDAF 172
           +LTPER++ I++ +
Sbjct: 151 NLTPERIDAILEQY 164


>gi|167032815|ref|YP_001668046.1| formate dehydrogenase subunit gamma [Pseudomonas putida GB-1]
 gi|166859303|gb|ABY97710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
           GB-1]
          Length = 160

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q   G++  AA+  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPILHAIQHDIGYIPDAAVPEIAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG E L    R ++       ++DG +S   V C GAC  +P + +    +  L
Sbjct: 83  AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142

Query: 161 TPERLEEIID 170
           TPERL  +++
Sbjct: 143 TPERLRALVN 152


>gi|237755576|ref|ZP_04584193.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692275|gb|EEP61266.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 160

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           ++N L++   ++  I +FY  F++     R H++VC   PC + GC+KLIE+      ++
Sbjct: 50  LSNYLEVPLSQIEGIVSFYDMFRVKR-NARHHIRVCKNLPCHIMGCKKLIELFEKLTGEE 108

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAFS 173
               + +G    E VEC GAC  AP  MI  D Y+   +T E+L EI+  ++
Sbjct: 109 RNQESKNGRFYIETVECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKYT 160


>gi|303242579|ref|ZP_07329056.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302589883|gb|EFL59654.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 161

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F+F       +++++S++  S  ++ +I +L   QE+  ++ +     ++  L+++  R
Sbjct: 4   TFNFK-----MIDDILSKHGLS--ETYIIAILQSIQEKYRYIPKEVFPYLSKKLNVSEAR 56

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGT 132
           +  +ATFY  F L P G +  +++C  T C +R    ++E  R   K+  K +    D  
Sbjct: 57  IFSVATFYENFSLEPKG-KYVIKICDGTACHVRKSIPILERLRKELKLSDKKI-TTDDLM 114

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            + E V C GAC  AP++ +    +  +TP++  E++     G  D
Sbjct: 115 FTVETVSCLGACGLAPVITVNDKVHPAMTPDKASELLKELREGNAD 160


>gi|254480843|ref|ZP_05094089.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
 gi|41582333|gb|AAS07947.1| NADH-quinone oxidoreductase, E subunit [uncultured marine bacterium
           463]
 gi|214038638|gb|EEB79299.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 167

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           + P R  +  I  L   Q   GWVS  ++  +A  L M+   +  IATFY      PVG 
Sbjct: 27  HVPYR-DAVAIDALKIVQAHRGWVSDESLSAIAAHLHMSADELDGIATFYNLIYRRPVGD 85

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C +  C ++GC+ L +    ++  +     SD   +   V C GAC  AP++M+
Sbjct: 86  KV-ILLCNSISCWIKGCDNLQQRITEELGVELGETTSDNRYTLLPVTCLGACDKAPVMMV 144

Query: 153 GKDTYEDLTPERLEEIIDAFST 174
           G + +EDL  E +  I+   +T
Sbjct: 145 GDELHEDLCEESIIRILGGSTT 166


>gi|261346154|ref|ZP_05973798.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
 gi|282565807|gb|EFB71342.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
          Length = 179

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 11  FQP---SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           F+P     F  ++E    +      Y  +R  +A I  L   Q+  GWV   AI  +A +
Sbjct: 17  FEPQLNHGFILTDEERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIAEV 74

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+Q    PVG R  ++ C +  C + G + L      +++ +P   
Sbjct: 75  LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQT 133

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             DG  +     C G C   P +MI +DT+  + PE ++++++ +
Sbjct: 134 TEDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVQPENIQKLLEQY 178


>gi|222054363|ref|YP_002536725.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221563652|gb|ACM19624.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 169

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L ++ ++V E+ATFY      PVG +  + V
Sbjct: 21  REAAVDVMKELQLHYGWLTDEAVVEAAGLLGLSPLQVEELATFYEMIYRQPVGKQV-IHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E ++      +  KP    +DG  +     C G C + P +MIG+  Y 
Sbjct: 80  CDSISCWAMGGETMMAHLAGLLGIKPGETTADGQFTLLPCACLGNCGDGPTMMIGEKIYG 139

Query: 159 DLTPERLEEIIDAF 172
            LT   L E+I  F
Sbjct: 140 KLTVPLLTEMIGWF 153


>gi|224368768|ref|YP_002602929.1| NuoE [Desulfobacterium autotrophicum HRM2]
 gi|223691484|gb|ACN14767.1| NuoE [Desulfobacterium autotrophicum HRM2]
          Length = 164

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I +L  +QE  G++    I  +++ L +   +V  +ATFY+ F L+P G R  ++VC
Sbjct: 32  GSLISVLRESQEVVGYLPSELINHISHGLVLPTSQVFGVATFYSFFSLTPKG-RHTIRVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G ++ I         K      D   S E V C GAC  AP++++ KD Y  
Sbjct: 91  TGTACYVKGIKEAIGRIHGTYGIKEGETTEDRKFSLEGVRCLGACGLAPVMIVDKDIYGQ 150

Query: 160 LTPERLEEIIDAF 172
           +T +++  I++ +
Sbjct: 151 VTSDKVINILEKY 163


>gi|326561570|gb|EGE11911.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 46P47B1]
          Length = 169

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  I  YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ + 
Sbjct: 25  IHHHIHYYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEGVATFFNRI 82

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C 
Sbjct: 83  YRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCD 141

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
               V+I +DTY  + P  +  +++ +
Sbjct: 142 KGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|310826463|ref|YP_003958820.1| HydC [Eubacterium limosum KIST612]
 gi|308738197|gb|ADO35857.1| HydC [Eubacterium limosum KIST612]
          Length = 156

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L   QE+ G++     + +A+ LD+    V  +ATFY+QF L P G +  + VC  
Sbjct: 27  LMQILQETQEKYGYLPIELQQTIADELDIPLTEVYGVATFYSQFTLKPKG-KYKIGVCLG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G + +++   + +         DG  S +   C GAC  AP++ I +D Y  L+
Sbjct: 86  TACYVKGSQAILDKVTDTLGLAVGDTTEDGKFSVDATRCVGACGLAPVMSINEDVYGRLS 145

Query: 162 PERLEEIIDAF 172
              +++I++ +
Sbjct: 146 VNEVKDILEKY 156


>gi|118594390|ref|ZP_01551737.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
 gi|118440168|gb|EAV46795.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
          Length = 157

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++PL+   Q+  G++   +  ++++  +++   +    TFY  F+ SP G    +QVC 
Sbjct: 24  ALLPLMHAIQDSLGYIPEDSYPIISSAYNLSIAEIHGFVTFYHHFRTSPSGKNI-LQVCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E +   C+  +       + DG ++ E V C G C  +P VM+       +
Sbjct: 83  AESCQSMGSESIENYCKKVLGVDYHETSKDGVITLEPVYCLGNCACSPSVMMNDKVIGRV 142

Query: 161 TPERLEEIIDA 171
           TPE+++ II A
Sbjct: 143 TPEKIDNIIKA 153


>gi|37787351|gb|AAP50519.1| Hox1E [Thiocapsa roseopersicina]
          Length = 164

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA+ LD+   +V  +ATFY  F L P G  A V VC 
Sbjct: 33  ALIETLHSVQDAFGFLDEGSLRFVASSLDLPLSKVYGVATFYHLFALKPKGRHACV-VCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   L+E  + +    P     D  LS     C GAC  AP ++I  D    L
Sbjct: 92  GTACYIKGAGGLVERLQERYDINPGETTEDDRLSLLTARCVGACGLAPAIVIDGDVLGKL 151

Query: 161 TPE----RLEEI 168
             E    +LEE+
Sbjct: 152 DSESLIAKLEEL 163


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ +I R   SR    +IPLL   Q++  ++   A+  V    ++   +++ ++TFY+QF
Sbjct: 5   VDAIIDRIGTSR--RDIIPLLQALQDEFSYLPSDALLRVYERTEIDRAQLISVSTFYSQF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGAC 144
           +  P G    ++VC  T C ++G   + +  R ++  ++     +D   S E++ C G C
Sbjct: 63  RHVPYGKHI-IKVCTGTACHVKGANNVYDAFRRELKMEEDRITTADQEYSIEKIACLGCC 121

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             AP+V I +  Y  + P R+ E++D F
Sbjct: 122 ALAPVVQIDEKIYGHVQPGRVNEVLDEF 149


>gi|225405664|ref|ZP_03760853.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
           DSM 15981]
 gi|225042809|gb|EEG53055.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
           DSM 15981]
          Length = 170

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L  AQ   G++     +V+A+ LD+    V  + TFY+ F   P G R  ++V
Sbjct: 34  EGSLIQVLHMAQGIYGYLPIEVQKVIADTLDIPLAEVAGVVTFYSFFSTQPRG-RHTIRV 92

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K++E  +  +  +      D   ++E   C GAC  AP + I    Y+
Sbjct: 93  CLGTACYVRGGKKIVERIKELLDVEIGETTKDRLFTFEVARCIGACGLAPAMSIDDQVYK 152

Query: 159 DLTPERLEEIIDAF 172
            + P++LE+I+  +
Sbjct: 153 QVNPDKLEQILKRY 166


>gi|302342959|ref|YP_003807488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301639572|gb|ADK84894.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 168

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 11/138 (7%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A+IP+L   Q   G++  A  + +A+ L MA   V  +ATFY+ F + P G R  V+VC
Sbjct: 36  GALIPVLQACQGVVGYLPEAVQQRIADGLGMAGHEVFGVATFYSFFTMKPRG-RNVVRVC 94

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-----LSWEEVECQGACVNAPMVMIGK 154
             T C +RG ++ +    +++ Q  L  N+DGT      + E V C GAC  AP+V+I +
Sbjct: 95  LGTACYVRGGKETM----DRLTQH-LTLNADGTTEDRRFTVEGVRCLGACGVAPVVVINE 149

Query: 155 DTYEDLTPERLEEIIDAF 172
           DT+  +  + +  +++ +
Sbjct: 150 DTHRKIMADSVINLVERY 167


>gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acidaminophilum]
          Length = 157

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 5/156 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+EE+   +++VI+ Y       A++P+L  AQ+  G V+    + ++  L++    +  
Sbjct: 6   FTEENFKKLDQVIAEYKGK--PGALMPVLHEAQKIFGCVALEVQKKISEGLNIPLAEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGTLSWE 136
           +ATFY+QF L P G    V VC  T C ++G + +I+ VC++ +  +    ++DG  +  
Sbjct: 64  VATFYSQFSLEPKGDYV-VGVCLGTACYVKGSQSIIDRVCKD-LDLEVGKTSADGKFTVV 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++ I +D Y  +  + +  I+  +
Sbjct: 122 ATRCVGACGLAPVMTINEDVYGKIVADDVPGILAKY 157


>gi|310658967|ref|YP_003936688.1| hyma protein [Clostridium sticklandii DSM 519]
 gi|308825745|emb|CBH21783.1| HymA protein [Clostridium sticklandii]
          Length = 157

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E+   ++ VI+++     Q A++P+L  A++  G++S    E ++  LD+    +  
Sbjct: 6   FTQENFARLDLVIAQHKGE--QGALMPVLYEAKKIFGFISIDIQERISKGLDIPLSEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY+ F     G    + VC  T C ++G +K+I+    K++ +     SDG  S   
Sbjct: 64  VASFYSTFSDKQKGENI-IAVCLGTACYVKGSQKIIDKISKKLNIEVGDTTSDGKFSLVP 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP+V I  D Y     + ++ I+  +
Sbjct: 123 ARCVGACSLAPVVTINADVYGKAKLDDIDSILSNY 157


>gi|254483036|ref|ZP_05096271.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214036721|gb|EEB77393.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 152

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             ++PLL   QE  G+V   +I  +A +++++   V  + +FY   + SPVG R  +QVC
Sbjct: 14  GGLLPLLHAVQEDLGYVPPESIPAIAEVMNLSAAEVHGVISFYHDLKTSPVG-RHTLQVC 72

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G   L    + ++         DG+++ E+V C G C  +P V I  +TY  
Sbjct: 73  AAESCQAAGGRALEHAAQEQLGIGFGETTDDGSVTLEKVYCLGNCACSPSVRIDNETYAR 132

Query: 160 LTPERLEEIIDAFSTGQG 177
           L    L  +I     G+G
Sbjct: 133 LDATGLTALIANIGQGEG 150


>gi|303246232|ref|ZP_07332512.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302492295|gb|EFL52167.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 168

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R  + ++P+L   QE+  ++    +  VA  L +    V  +ATFY  F L+P G +  V
Sbjct: 27  RHPARLVPILQALQEEYRYLPEEVLSYVATSLRIPEANVFGVATFYAHFALTPKG-KYIV 85

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKD 155
           ++C  T C ++    ++E  R ++        + D   + E V C GAC  AP+++I +D
Sbjct: 86  RLCDGTACHVKHSIPILEALRGRLSLSEEKTTTPDMLFTVETVACLGACGLAPVMVINED 145

Query: 156 TYEDLTPERLEEIIDAF 172
            Y  +TP+R   +ID+ 
Sbjct: 146 VYGQMTPQRAVSLIDSI 162


>gi|268591138|ref|ZP_06125359.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
 gi|291313364|gb|EFE53817.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
          Length = 183

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 50  RAASIEALKIVQKNRGWVEDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHIIRY 108

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + L      +++ +P    +DG  +     C G C   P +MI  DT+ 
Sbjct: 109 CDSVVCHITGYQGLEAEIIKQLNIRPGQTTADGRFTLLPTCCLGNCDKGPTMMIDDDTHS 168

Query: 159 DLTPERLEEIIDAF 172
            + PE ++++++ +
Sbjct: 169 YVQPENIQKLLEQY 182


>gi|188995983|ref|YP_001930234.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931050|gb|ACD65680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 156

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++  IPLL   Q   G++    +E++A  L+++   +  + TFY+ F+    G    ++V
Sbjct: 15  KNGFIPLLHSIQNHYGYIPIEFVEILAKRLNLSKAEIWGVITFYSDFKTKKPGKNI-IKV 73

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C+  G  ++ +  ++K++        DG  + EEV C G C   P VMI    Y 
Sbjct: 74  CRSESCIANGGLEIQKYLKSKLNINFKETTEDGKFTLEEVFCFGNCGCGPSVMINNKLYG 133

Query: 159 DLTPERLEEIIDAFS 173
            ++ ++LEE++   S
Sbjct: 134 RVSLKKLEELLKNLS 148


>gi|168184521|ref|ZP_02619185.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795253|ref|YP_002862805.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672342|gb|EDT84303.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229261562|gb|ACQ52595.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum Ba4
           str. 657]
          Length = 159

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNDVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++     K++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDILSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   ++++++ + 
Sbjct: 141 VYGHFTKNEVDKVLEEYG 158


>gi|158321274|ref|YP_001513781.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158141473|gb|ABW19785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 157

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+E+   + EVI  +  ++    ++P+L  AQ+  G +S    + ++  + +    +  
Sbjct: 6   LSKENFEKLYEVIKEHKDTK--GPLMPVLHEAQKIFGCISLEVQKEISGKMSVPLSEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+QF L P G + H+ VC  T C +RG + +I+        +    +SDG  S E 
Sbjct: 64  VVTFYSQFTLEPKG-KYHIGVCLGTACYVRGSQAIIDKVTELTGVEIGKTSSDGRFSLEA 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++ +  + Y  LT   +  I++ +
Sbjct: 123 TRCIGACGLAPVLSVNDEVYGRLTANDIAGILEKY 157


>gi|53804526|ref|YP_113817.1| NADH dehydrogenase subunit E [Methylococcus capsulatus str. Bath]
 gi|53758287|gb|AAU92578.1| NADH dehydrogenase I, E subunit [Methylococcus capsulatus str.
           Bath]
          Length = 157

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +A I  L   Q   GW+S   ++ +A +L M+   +  IATFY      PVG R  +  C
Sbjct: 23  AAAIEALNIVQRSHGWISDELLQEIAELLGMSPAELDSIATFYNLIYRRPVGRRV-IHYC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            +  C + G E        K+         +G  +   + C GAC  AP++MIG +T+ +
Sbjct: 82  NSVSCWMLGAEDNRRHLSEKLGIAVGETTGNGEYTLLPIVCLGACDKAPVLMIGDETHFN 141

Query: 160 LTPERLEEII 169
           + P RL++I+
Sbjct: 142 VDPARLDDIL 151


>gi|325261422|ref|ZP_08128160.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
 gi|324032876|gb|EGB94153.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
          Length = 170

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L  AQ   G++     EV+A+ LD+    V  + TFY+ F   P G    ++V
Sbjct: 33  EGSLIQVLHMAQGLYGYLPLEVQEVIADSLDLPLAEVSGVVTFYSFFATQPRGKHT-IRV 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K++E  +  +  +      D   ++E   C G+C  AP + I    Y+
Sbjct: 92  CLGTACYVRGGKKIVERLKKILDVEIGETTKDRKFTFEVARCIGSCGLAPAMSIDDQVYK 151

Query: 159 DLTPERLEEIIDAF 172
            + P++LE+I+  +
Sbjct: 152 QVNPDKLEQILQRY 165


>gi|197285617|ref|YP_002151489.1| NADH dehydrogenase subunit E [Proteus mirabilis HI4320]
 gi|227356120|ref|ZP_03840510.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
 gi|194683104|emb|CAR43661.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis HI4320]
 gi|227163765|gb|EEI48677.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
          Length = 181

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  ++E    + +    Y   R  +A I  L   Q+  GWV   AI  +A++L +   
Sbjct: 25  NTFVLTQEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P     DG  
Sbjct: 83  DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNILPGQTTPDGRF 141

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +M+  DT+  + PE +E +++ +
Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180


>gi|332652332|ref|ZP_08418077.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
 gi|332517478|gb|EGJ47081.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
          Length = 164

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E+I+ Y   R Q  +I ++   Q +  ++S   +E++A  L++   +V  +ATFY  F
Sbjct: 10  VEEIINSYGCQRHQ--LIAIMQDVQAEFKYLSPQVLELIAQKLNIGVAKVYSVATFYENF 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144
            L   G +  ++VC  T C +R  + +    R  +  +   + S DG  + E V C GAC
Sbjct: 68  SLEAKG-KYIIKVCDGTACHVRKSQPIYNAIREYLELEDKQKTSADGLFTLETVACLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             AP+V +    +  ++PE   +++++ 
Sbjct: 127 GLAPVVTVNDQVHSKMSPELAIDLLESL 154


>gi|268607921|ref|ZP_06141652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 164

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI---RVLEIATFYTQFQLSPVGTRAH 95
           + A++P+L +AQE  G++    IEV A I D   I   ++  + TFY QF L P G    
Sbjct: 31  KGALMPILQKAQEIYGYLP---IEVQAIISDNTGIPLEKIYGVVTFYAQFSLYPKG-EYT 86

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   +    + K+         DG  S +   C GAC  AP++ + +D
Sbjct: 87  ISVCLGTACYVKGSGDIYNKLQEKLGIGGGECTPDGKFSLDACRCIGACGLAPVLTVNED 146

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y  LT + +++II  ++
Sbjct: 147 VYGRLTVDDVDKIIAKYA 164


>gi|39937321|ref|NP_949597.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
 gi|192293101|ref|YP_001993706.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
 gi|39651179|emb|CAE29702.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
           CGA009]
 gi|192286850|gb|ACF03231.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 162

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   QE EGWVS A ++  A++L +    +  +ATFY+Q   SPVG    + +
Sbjct: 22  KAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTPAEIDALATFYSQIFRSPVGDTV-ILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156
           C    C L G + + +   +K+         DG  +   + C G C  AP+ ++G  +  
Sbjct: 81  CDGLSCYLCGGDAVRDAVMSKLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140

Query: 157 YEDLTPERLEEIIDAFSTG 175
              LTP+ L+ +I   S G
Sbjct: 141 VGPLTPDDLDALIGGVSVG 159


>gi|150388473|ref|YP_001318522.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149948335|gb|ABR46863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 169

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +L +AQ+  G++ R     VA  L ++  +V  + TFY+ F   P G    + V
Sbjct: 36  EGRLIQILHKAQQIFGYLPRDIQLFVARRLGISGAKVNGVITFYSYFTQEPRGEHT-INV 94

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G  K+IE   ++++ K      D   + ++V C GAC  AP++++ +  Y 
Sbjct: 95  CTGTACFVKGIGKIIEELESQLNIKLGKTTEDMKFTLKDVRCVGACGLAPLIVVDEKVYG 154

Query: 159 DLTPERLEEIIDAF 172
            + PE +E+I+  +
Sbjct: 155 RVKPEDVEKIMSEY 168


>gi|311108351|ref|YP_003981204.1| NAD-dependent formate dehydrogenase subunit delta [Achromobacter
           xylosoxidans A8]
 gi|310763040|gb|ADP18489.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           xylosoxidans A8]
          Length = 185

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q + G +   A++ +A  L+++   V  + TFY  F+  P   R  ++VC  
Sbjct: 51  LLPVLHAVQHELGCIPAPAVQTIAEALNLSRAEVHGVITFYPHFRSEPAA-RHTLEVCRA 109

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
             C   G E L    R  +     H NS +G  + E V C G C  +P VMI    Y  +
Sbjct: 110 EACQAMGGEHLAAHARTALGCD-FHANSRNGDFTLEPVYCLGLCAQSPAVMIDGRPYARV 168

Query: 161 TPERLEEII 169
           TPE+L+ ++
Sbjct: 169 TPEKLDRLL 177


>gi|168180427|ref|ZP_02615091.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|170756016|ref|YP_001781397.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|170758313|ref|YP_001787174.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169121228|gb|ACA45064.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B1
           str. Okra]
 gi|169405302|gb|ACA53713.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A3
           str. Loch Maree]
 gi|182668883|gb|EDT80861.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
          Length = 159

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++     K++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   ++++++ + 
Sbjct: 141 VYGHFTKNEVDKVLEEYG 158


>gi|187779550|ref|ZP_02996023.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
           15579]
 gi|187773175|gb|EDU36977.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
           15579]
          Length = 159

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++     K++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   ++++++ + 
Sbjct: 141 VYGHFTKNEVDKVLEEYG 158


>gi|206901474|ref|YP_002251394.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
           H-6-12]
 gi|206740577|gb|ACI19635.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
           H-6-12]
          Length = 153

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++  +P  R    +I +L   Q +    +++   I+  A  L +    V  +A+FY+ F
Sbjct: 6   KILESFP--RDPDYIIEILHELQNRNPYNYLTPEDIKACAEYLGLPVSYVEGVASFYSMF 63

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  +++C + PC L G E L+E    K++ K      D   + E   C G C 
Sbjct: 64  SLKPRG-RYVIRLCDSPPCHLVGSESLLEYLEKKLNIKVGETTEDKLFTLELTSCLGVCA 122

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP +MI  + Y +LT E++++I++
Sbjct: 123 VAPAMMINDEVYGNLTFEKIDKILE 147


>gi|326201301|ref|ZP_08191173.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988869|gb|EGD49693.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 157

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            VN +++++  ++  S +I +L   Q +  ++    +  VA  L++   ++  +ATFY  
Sbjct: 8   LVNGILNKHDNNK--SHLIAVLQEIQNEYKYLPEDVLNYVAEKLEINLSKIFSVATFYEN 65

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGA 143
           F L P G +  ++VC  T C +R    ++   R ++   +  H   D   + E V C GA
Sbjct: 66  FSLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSESKHTTDDKLFTVETVSCLGA 124

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP++ I    Y  +TP+   EII   
Sbjct: 125 CGLAPVITINDKVYAKMTPDSTIEIIKTL 153


>gi|194288742|ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222577|emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 181

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q+ +G++   A+ V+A  L+++   V  + TFY  F+  P G R  VQVC
Sbjct: 35  GALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHVVQVC 93

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G   L E  +  +       ++DG ++ E V C G C   P VM+G+  +  
Sbjct: 94  RAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQLHGY 153

Query: 160 LTPERLEEII 169
           +   R + ++
Sbjct: 154 VDAARFDALV 163


>gi|326791481|ref|YP_004309302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542245|gb|ADZ84104.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 165

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++NE+     P + + A+I +L +AQ   G++ +     V   L++   +V  + +FY+ 
Sbjct: 21  FINEL-----PEK-KGALIAVLHKAQGLFGYLPKEVQMFVGEKLNIPVSQVYGVVSFYSF 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F ++P G +  + VC  T C +RG +K+++  + ++  +     +DG  S + + C GAC
Sbjct: 75  FTMTPKG-KYPISVCLGTACYVRGADKVLDAFKKELGIEVGQTTADGRFSLDALRCVGAC 133

Query: 145 VNAPMVMIGKDTYEDL-TPERLEEIIDAF 172
             AP+V+IG+  Y  + + E +++I+  +
Sbjct: 134 GLAPVVLIGEKVYGRIGSAEEVKKILSEY 162


>gi|83590555|ref|YP_430564.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|83573469|gb|ABC20021.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
          Length = 157

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           SA+I +L ++QE  G++ R     +A+ L ++  +V  + +FY  F   P G +  V VC
Sbjct: 25  SALIEVLHQSQELVGYLPRNVQVAIADGLGLSLSQVYSVVSFYNHFTTKPKG-KYQVSVC 83

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G   ++E    ++  K     +DG  +  +V C G C   P++ + +  +  
Sbjct: 84  MGTACFVKGAPAILERLEQELGTKVGDTTADGRFTINQVRCLGCCALGPVMTVNQKAHGR 143

Query: 160 LTPERLEEIIDAF 172
           LTP+   EI+  +
Sbjct: 144 LTPDTALEILKEY 156


>gi|283778530|ref|YP_003369285.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
           DSM 6068]
 gi|283436983|gb|ADB15425.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
           DSM 6068]
          Length = 166

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     +EE    +   I RYP    Q+  +P L    E+  +V   A+  +A +L++  
Sbjct: 6   PEKPVLTEEMIAEIKAFIPRYPSK--QAVTLPALHIVYEKLRYVPLTAVVEIARLLELHP 63

Query: 73  IRVLEIATFYTQF-QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            +V +  +FY  F Q  P G +  + VC +  C LRG ++L+E   +K+   P    +DG
Sbjct: 64  SQVQDTLSFYGYFPQKKPCG-KTRMWVCRSISCALRGADELLEHLSHKLDVHPGETTADG 122

Query: 132 TLSWEEVECQGACVNAPMVM 151
            ++ E  EC GAC +AP ++
Sbjct: 123 KITLEYAECLGACEHAPCIL 142


>gi|270307814|ref|YP_003329872.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
           VS]
 gi|270153706|gb|ACZ61544.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
           VS]
          Length = 154

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+S Y   R    +IP+L+  Q +  ++SR  ++ VA  + +    V  IATFY+QF+L 
Sbjct: 12  VLSLYEAKR--ENLIPILLAFQRKFSYLSRDMMQSVAVYIGVPESSVYNIATFYSQFRLE 69

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G E+L+     ++  K      D  +S + + C G C  AP
Sbjct: 70  PPGIH-KVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    Y  L    L  I+
Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149


>gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3')
           subunits of formate dehydrogenase and to nuoE and nuoF
           of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch
           sediment']
          Length = 710

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+++P  R ++ ++P L  AQ  EGW+S  ++  VA  L +    V  +A  Y +F
Sbjct: 9   LRTLIAQFP--RERTWLLPALQTAQRAEGWLSPESLATVALHLRVPQSEVYGVAGHYPEF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L+  G+R  V+VC    C ++G   L+   +N++       + D +++ EE +C   C 
Sbjct: 67  RLTKPGSRL-VRVCTGVSCRIQGGLTLLHALQNRLGLTVGETSQDHSVTLEEADCLFRCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP+V +    Y  L  +RL+ I +
Sbjct: 126 MAPVVEVDHRCYGRLDTDRLDSIFN 150


>gi|326567653|gb|EGE17761.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 12P80B1]
          Length = 169

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ +    PVG 
Sbjct: 32  YPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEGVATFFNRIYRLPVG- 88

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C     V+I
Sbjct: 89  RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DTY  + P  +  +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168


>gi|170076826|ref|YP_001733464.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
           sp. PCC 7002]
 gi|169884495|gb|ACA98208.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
           sp. PCC 7002]
          Length = 163

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  +I +L +AQE  G++    +E VA  L +   RV  +ATFY  F L P G    V V
Sbjct: 27  QDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHTCV-V 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  T C ++G ++L++     +H KP     D  +S     C GAC  AP V+
Sbjct: 86  CLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVV 138


>gi|33600309|ref|NP_887869.1| formate dehydrogenase subunit gamma [Bordetella bronchiseptica
           RB50]
 gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           bronchiseptica RB50]
          Length = 185

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G++   A++ +A  L ++   V  + TFY  F+  P G R  +++C 
Sbjct: 50  ALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLEICR 108

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G + L    R ++  +     +DG+ + E V C G C  +P VMI    +  +
Sbjct: 109 AESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPHARV 168

Query: 161 TPERLEEII 169
           TP +L+ ++
Sbjct: 169 TPAKLDRLL 177


>gi|114567344|ref|YP_754498.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338279|gb|ABI69127.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+IS Y        +I      Q++  ++   A+   A + D+   +   +ATFY+  ++
Sbjct: 6   EIISAY--KEVPGGIIEAYHAVQKEYSYIPEDAVVYAAQVFDIPEAKAYGVATFYSYLKV 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G    +++C + PC + G +K++     ++  K      DG  + E  EC G C   
Sbjct: 64  GPRGKNV-IRICESAPCHIAGADKVVAALEKELGIKMGETTPDGKFTLEFAECVGQCQAT 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++ I    Y D+T +++  I+  +
Sbjct: 123 PVITINSQPYGDVTADKIAAILTEY 147


>gi|195952595|ref|YP_002120885.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932207|gb|ACG56907.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 154

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           +Y  S+ + A++  L   QE  G +   A+E ++ ILD+    +  +  FY  F      
Sbjct: 15  KYFGSK-EEAMLLSLHSIQEHLGHIPEEALEELSEILDIPLHHIKGVVAFYEMFDTGE-K 72

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VC +  C L    K+    +  +  +P     DG     EV+C GAC  AP+ M
Sbjct: 73  AKHRIYVCNSIVCYLLKSHKVFNAVKELLGIEPGQVTRDGMFKLVEVQCLGACSEAPVFM 132

Query: 152 IGKDTYEDLTPERLEEIIDAFS 173
           +  DTY   + E+L EI+  +S
Sbjct: 133 VDNDTYRYESKEKLHEILAKYS 154


>gi|257066579|ref|YP_003152835.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798459|gb|ACV29114.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 164

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           V+P L + Q    ++    ++++A  L++    +  +ATFY+ F L P G    + VC  
Sbjct: 29  VMPALQKCQNVFSYIPEPVVDLMALKLNVPSSEIYGVATFYSHFSLKPKGEH-DICVCLG 87

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDL 160
           T C + G +K+++    ++  +      DG +S  E  C G C +AP+VMI G+D  E +
Sbjct: 88  TACYVNGSDKILKSLAEELGVEVGDTTEDGKISLSEARCVGECGSAPVVMIDGEDFVEKV 147

Query: 161 TPERLEEII 169
            P ++  II
Sbjct: 148 DPSQVHNII 156


>gi|296112935|ref|YP_003626873.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
 gi|295920629|gb|ADG60980.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
 gi|326569468|gb|EGE19528.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC8]
 gi|326577452|gb|EGE27336.1| NADH dehydrogenase subunit E [Moraxella catarrhalis O35E]
          Length = 169

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ +    PVG 
Sbjct: 32  YPQAR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C     V+I
Sbjct: 89  RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DTY  + P  +  +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168


>gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synechococcus sp. PCC 7002]
          Length = 170

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  +I +L +AQE  G++    +E VA  L +   RV  +ATFY  F L P G    V V
Sbjct: 34  QDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHTCV-V 92

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  T C ++G ++L++     +H KP     D  +S     C GAC  AP V+
Sbjct: 93  CLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVV 145


>gi|220929713|ref|YP_002506622.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|220000041|gb|ACL76642.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 157

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V+ V+S+Y   +  S +I +L   Q +  ++    ++ VA  LD+   ++  +ATFY  
Sbjct: 8   LVDGVLSKYDNHK--SHLIAVLQEIQNEYKYLPEDVLKYVAEKLDINLSKIFSVATFYEN 65

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGA 143
           F L P G +  ++VC  T C +R    ++   R ++      H   D   + E V C GA
Sbjct: 66  FSLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSDNKHTTDDMLFTVETVSCLGA 124

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEII 169
           C  AP++ I    +  +TP+   E+I
Sbjct: 125 CGLAPVITINDKVHAKMTPDSTIELI 150


>gi|166032052|ref|ZP_02234881.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
           27755]
 gi|166027775|gb|EDR46532.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
           27755]
          Length = 162

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R + ++IP++   QE+  ++    +  VA  + ++  +   +A+FY  F     G    
Sbjct: 23  TREERSLIPIIQDIQEEYRYLPPELLSYVAGKIGISEAKAFSVASFYENFSFEAKGKYV- 81

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           ++VC  T C +R    ++E    ++   K  H   D   + E V C GAC  AP VMI  
Sbjct: 82  IKVCDGTACHVRKSIPILEGLYKELGLNKDKHTTDDQLFTVETVSCLGACGLAPAVMIND 141

Query: 155 DTYEDLTPERLEEII 169
           + Y  +TPE++ E+I
Sbjct: 142 EVYGKMTPEKMSELI 156


>gi|169832067|ref|YP_001718049.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638911|gb|ACA60417.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 184

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  E + + ++++I RY        +I +L +AQE  G++SR     VA  + +    V
Sbjct: 1   MNVEERNYLVLDKIIERYGDR--PGGLIRVLYKAQELFGYLSRDVQTHVAEKMCLPVGHV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF  +P G    V+VC  T C ++  + ++   R  +  +P    +DG  + 
Sbjct: 59  HGVATFYSQFVTAPQGKNV-VRVCMGTACYVKNAQDILNRFRELLGVEPDETTADGLFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C GAC  AP++ + +  +  L+   +  ++D +
Sbjct: 118 RTTRCIGACSLAPLLTVNESVHGHLSVYDVARLVDRY 154


>gi|73748524|ref|YP_307763.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147669305|ref|YP_001214123.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|289432571|ref|YP_003462444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146270253|gb|ABQ17245.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|288946291|gb|ADC73988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 157

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++++Y   +    ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  F
Sbjct: 13  VKDILNKYAKDK--GMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKAF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G  + V VC  T C +RG  K+++    K+         D   S + V C GAC 
Sbjct: 71  SLKPKGKHS-VHVCMGTACHVRGASKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGACA 129

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
             P+V++      ++T E+++ +I+ 
Sbjct: 130 LGPVVVVDGQYVGNMTTEKVKPLIEG 155


>gi|239627949|ref|ZP_04670980.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518095|gb|EEQ57961.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47FAA]
          Length = 171

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 1/139 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L  AQ   G++     +V+A+ L++    V  + TFY+ F   P G    ++V
Sbjct: 32  EGSLIQVLHMAQGIYGYLPLEVQKVIADALEVPLAEVSGVVTFYSFFSTQPRGEHT-IRV 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG +K++E  +  +  +     +D   ++E   C GAC  AP + I    Y+
Sbjct: 91  CLGTACYVRGGKKIVERIKELLDVEIGETTADRKFTFEVARCIGACGLAPAMSIDDQVYK 150

Query: 159 DLTPERLEEIIDAFSTGQG 177
            + P++LE+I++ +   +G
Sbjct: 151 QVNPDKLEQILERYYEEEG 169


>gi|153939211|ref|YP_001391109.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152935107|gb|ABS40605.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319155|gb|ADF99532.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 159

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++     K++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   + ++++ + 
Sbjct: 141 VYGHFTKNEVNKVLEEYG 158


>gi|306821644|ref|ZP_07455242.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550389|gb|EFM38382.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 179

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P+L  AQ   G++ +  +E++++ L      +  +ATFY+QF   P G  A + V
Sbjct: 42  RGAVMPILQEAQRIFGYIPKEIVEIMSHRLGKHSSEIYGVATFYSQFTFIPKGKYA-ISV 100

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G  +++E    ++  K      D   S  E  C G C  AP+V +    Y 
Sbjct: 101 CLGTACYVNGANEILEEFEKQLKIKKGETTKDLLFSIVETRCVGECAQAPVVTVNDKVYP 160

Query: 159 DLTPERLEEIIDAF 172
             +   +++++  +
Sbjct: 161 KFSVSDVDDLLTEY 174


>gi|289432337|ref|YP_003462210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|288946057|gb|ADC73754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 154

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L+  Q    ++SR  ++ VA  + +    V  IATFY+QF+L P G    V VC  
Sbjct: 23  LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIH-RVHVCRG 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G E+L+     ++  K      D  +S + + C G C  AP + +    Y  L 
Sbjct: 82  TACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAPTLEVDGKLYTRLN 141

Query: 162 PERLEEII 169
              L  I+
Sbjct: 142 GSSLNRIL 149


>gi|33595782|ref|NP_883425.1| formate dehydrogenase subunit gamma [Bordetella parapertussis
           12822]
 gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           parapertussis]
          Length = 163

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G++   A++ +A  L ++   V  + TFY  F+  P G R  +++C 
Sbjct: 28  ALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLEICR 86

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G + L    R ++  +     +DG+ + E V C G C  +P VMI    +  +
Sbjct: 87  AESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPHARV 146

Query: 161 TPERLEEII 169
           TP +L+ ++
Sbjct: 147 TPAKLDRLL 155


>gi|46446197|ref|YP_007562.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 159

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  SA+IP L  AQ ++G++       +A + D+    V  I TFY  F   PVG 
Sbjct: 5   YPNKR--SALIPALHLAQAEKGYLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVGK 62

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              + VC    CMLRG +  +     K+H  P     DG  +    EC  AC  AP++++
Sbjct: 63  HV-IHVCKNISCMLRGADGFLARLCQKMHISPGETTQDGEFTVIASECLAACDKAPVMIV 121


>gi|226949093|ref|YP_002804184.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840738|gb|ACO83404.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 159

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F   P G    
Sbjct: 22  SNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYSYFTTEPKGENV- 80

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G   ++     K++ K      DG  + + + C GAC  AP+V I   
Sbjct: 81  INVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGACGLAPVVTINDK 140

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y   T   + ++++ + 
Sbjct: 141 VYGHFTKNEVAKVLEEYG 158


>gi|326572770|gb|EGE22756.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC7]
          Length = 169

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ +    PVG 
Sbjct: 32  YPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C     V+I
Sbjct: 89  RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DTY  + P  +  +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168


>gi|75910849|ref|YP_325145.1| bidirectional hydrogenase complex protein HoxE [Anabaena variabilis
           ATCC 29413]
 gi|75704574|gb|ABA24250.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Anabaena variabilis ATCC 29413]
          Length = 164

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  +A+ L +   RV  +ATFY  F L+P G  + V V
Sbjct: 31  QDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCV-V 89

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G + ++               +DG LS     C GAC  AP V+       
Sbjct: 90  CTGTACYVKGAQAILTDLEKSTRIHAGETTADGQLSLLTARCLGACGIAPAVVFDGKVLG 149

Query: 159 DLTPERLEE 167
           + TPE + E
Sbjct: 150 NQTPESVSE 158


>gi|73748288|ref|YP_307527.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147669068|ref|YP_001213886.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146270016|gb|ABQ17008.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
          Length = 154

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L+  Q    ++SR  ++ VA  + +    V  IATFY+QF+L P G    V VC  
Sbjct: 23  LIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLEPPGIH-RVHVCRG 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G E+L+     ++  K      D  +S + + C G C  AP + +    Y  L 
Sbjct: 82  TACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAPTLEVDGKLYTRLN 141

Query: 162 PERLEEII 169
              L  I+
Sbjct: 142 GSSLNRIL 149


>gi|325294616|ref|YP_004281130.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065064|gb|ADY73071.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 167

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           VI +L   QE+  ++S+ A+E V+  L++   ++  IATFY+ F L PVG    + VC  
Sbjct: 24  VISILEDIQEKNKYLSKEALEYVSEKLNIPLSQLYSIATFYSFFNLKPVGKHI-ISVCTG 82

Query: 102 TPCMLRGCEKLIEVCRN--KIHQKPLHRNS-------DGTLSWEEVECQGACVNAPMVMI 152
           TPC ++G  +LI+       I Q  +  +S       D + S     C G C  AP++ I
Sbjct: 83  TPCHVKGAPQLIKTLERLLGIKQDEVSEDSKFFLTTHDRSFSLTAARCFGCCSMAPVIRI 142

Query: 153 GKDTYEDLTPERLEEIIDAF 172
               Y  +T   L +I+  +
Sbjct: 143 DDKIYGYVTVNDLPKILKEY 162


>gi|270308047|ref|YP_003330105.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
 gi|270153939|gb|ACZ61777.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
          Length = 157

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++++Y   +    ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  F
Sbjct: 13  VKDILNKYAKDK--GMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKAF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G  + + VC  T C +RG  K+++    K+         D   S + V C GAC 
Sbjct: 71  SLKPKGKHS-IHVCMGTACHVRGANKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGACA 129

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
             P+V++      ++T E+++ +I+ 
Sbjct: 130 LGPVVVVDGQYMGNMTTEKVKPLIEG 155


>gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P++ + S+     V+ +++RY  +     ++P+L   QE  G++     + ++  L++  
Sbjct: 10  PAASALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCKLNIPG 67

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  + +FY+ +   P G    ++ C + PC ++G + L+E  + ++     H   DG 
Sbjct: 68  SDVFGVMSFYSMYTWRPKGKYV-IRFCESPPCHIQGADNLLEFTQAELGVPLKHTTKDGL 126

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            + E   C G C  AP + I +  + +LT +++ +I+  +  G+
Sbjct: 127 FTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGK 170


>gi|298384457|ref|ZP_06994017.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
 gi|298262736|gb|EFI05600.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
          Length = 303

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L  AQ   G++      ++A+ L +   +V  + TFYT F ++P G    + VC  
Sbjct: 28  LINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP-ISVCMG 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           T C +RG EKL+E  +  +  +      DG  S + + C GAC  AP+VMIG+
Sbjct: 87  TACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGACGLAPVVMIGE 139


>gi|326565197|gb|EGE15384.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 103P14B1]
 gi|326574010|gb|EGE23959.1| NADH dehydrogenase subunit E [Moraxella catarrhalis CO72]
          Length = 169

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ +    PVG 
Sbjct: 32  YPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEGVATFFNRIYRLPVG- 88

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C     V+I
Sbjct: 89  RHVILVCDSIACYLTGYEMLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DTY  + P  +  +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168


>gi|91775075|ref|YP_544831.1| formate dehydrogenase subunit gamma [Methylobacillus flagellatus
           KT]
 gi|91709062|gb|ABE48990.1| formate dehydrogenase gamma subunit [Methylobacillus flagellatus
           KT]
          Length = 156

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++PLL   Q+   ++      ++A  L+++   V  + TFY  F+  P G R  +QVC 
Sbjct: 21  ALMPLLHAIQDDLSYIPEECYGLIAKALNLSVAEVHGVVTFYHHFRTRPPG-RHVLQVCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   GC  L    ++ +        SDG+++ E V C G C  +P +M+  + Y  +
Sbjct: 80  AESCQAMGCGALESHVKSSLGIDYHETTSDGSITLEPVYCLGNCACSPAIMLDDEIYGRV 139

Query: 161 TPERLEEII 169
           +P+++E ++
Sbjct: 140 SPQQVESLL 148


>gi|57234507|ref|YP_181466.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 159

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  ++ +Y   +    ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  F
Sbjct: 13  VKNILDKYAKDK--GMLVAILQDIQTEFNYLPRPALETVSEGLGVPMSQVYSVATFFKAF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G  + + VC  T C +RG  K+++    K+        +D   S + V C GAC 
Sbjct: 71  SLKPKGKHS-IHVCMGTACHVRGANKILDKLVEKLGCCAGENTADMKFSLDAVNCVGACA 129

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
             P+V++      ++T E+++ +I+ 
Sbjct: 130 LGPVVVVDGQYVGNMTTEKVKPLIEG 155


>gi|302387718|ref|YP_003823540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           saccharolyticum WM1]
 gi|302198346|gb|ADL05917.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           saccharolyticum WM1]
          Length = 164

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q   F+ ++E  I + EVI+    ++   +++P++ +AQE  G++    IEV   I D  
Sbjct: 6   QGVQFNGTKEQEIALKEVIALLRDTK--GSLMPIMQKAQEIYGYLP---IEVQTMISDET 60

Query: 72  YI---RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            I   ++  +ATFY QF L P G +  + VC  T C ++G   +       +        
Sbjct: 61  GIPLEKIYGVATFYAQFALQPKG-KYQISVCLGTACYVKGSGDIFHKLEEILGITNGECT 119

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            DG  S +   C GAC  AP++M+  + Y  L+ + + +I+  +
Sbjct: 120 PDGKFSLDSCRCVGACGLAPVMMVNGEVYGRLSADDVPDILAKY 163


>gi|325274758|ref|ZP_08140794.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
 gi|324100102|gb|EGB97912.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
          Length = 160

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q    ++  AA+  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPMLHAIQHDLCYIPDAAVPELAHALNLSLAEVRGVISFYHDFRTAP-PARHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG E L    R ++       ++DG +S   V C GAC  +P + +    +  L
Sbjct: 83  AESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACACSPALELDGQVHARL 142

Query: 161 TPERLEEIIDA 171
           TPERL  +++A
Sbjct: 143 TPERLRALVNA 153


>gi|118473363|ref|YP_884575.1| formate dehydrogenase, subunit gamma [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174650|gb|ABK75546.1| formate dehydrogenase, gamma subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 161

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  V E+ + +   R    ++P+L   QE+ G V   A+ V+A  L+++   V  + TFY
Sbjct: 12  ATLVREIAADHRDHR--GPLLPILHAVQERLGCVPAEAVPVLAEELNLSRADVHGVITFY 69

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F+  P G R  V+VC    C   G  +L+   +++   +      DGTL+ E+V C G
Sbjct: 70  HDFRSEPAG-RTTVRVCRAEACQALGASRLVAHLQDRHGVQLGDATDDGTLTAEQVFCLG 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C   P   +    Y  L   RL  +ID+  T
Sbjct: 129 NCALGPSAQVDGRLYGRLDEARLSALIDSAVT 160


>gi|326561159|gb|EGE11524.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 7169]
          Length = 169

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  +ATF+ +    PVG 
Sbjct: 32  YPQPR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVG- 88

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +  C L G E L+   + ++  +     +DG  +   + C G C     V+I
Sbjct: 89  RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLPICCLGNCDKGASVLI 148

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DTY  + P  +  +++ +
Sbjct: 149 DEDTYGPVLPSEVGLLLEQY 168


>gi|293607183|ref|ZP_06689525.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292814517|gb|EFF73656.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 185

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q + G +   A++ +A  L+++   V  + TFY  F+  P   R  V+VC  
Sbjct: 51  LLPVLHEVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRSEPAA-RHTVEVCRA 109

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G ++L    R ++        +DG  + E V C G C  +P VMI    +  +T
Sbjct: 110 ESCQAMGADQLAAHARAQLGCDFHASTADGNFTLEPVYCLGLCAQSPAVMIDGQPHARVT 169

Query: 162 PERLEEII 169
           P +L+ ++
Sbjct: 170 PAKLDRLL 177


>gi|225849103|ref|YP_002729267.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644487|gb|ACN99537.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 160

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++ + R+P    + AVI  L     +   ++   ++ +++ L +    +  I +FY  F
Sbjct: 14  IDKYLERFPVK--EQAVIQSLHLIYSKYRDITLEHMQELSDYLQVPLAHIEGIVSFYDMF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           ++     R H++VC   PC + GC+KL+E+      +K    + +G    E VEC G+C 
Sbjct: 72  RVKR-NARHHIRVCKNLPCHIMGCKKLLELFEKLTGEKANEESKNGRFYIETVECIGSCS 130

Query: 146 NAPMVMIGKDTYE--DLTPERLEEIIDAFS 173
            AP  MI  D Y+   +   +L EI+  ++
Sbjct: 131 VAPAFMIDDDLYDGTKINEGKLNEILSKYT 160


>gi|218961479|ref|YP_001741254.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730136|emb|CAO81048.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma [Candidatus Cloacamonas
           acidaminovorans]
          Length = 160

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 74/135 (54%), Gaps = 2/135 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++ +I +L  AQE  G++     E +A  L++   ++  + TFY  F ++P G + ++ V
Sbjct: 26  RNPLIEILRSAQEIFGYLPVEVQEFIAQELNIPVNQIYGVVTFYNFFTMTPRG-KYNLNV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G  +L+++   ++  +      DG  +   V C GAC  AP+ +IG++TY 
Sbjct: 85  CLGTACFVKGAPRLVQMLSEELGIQMGETTKDGIFTMSAVRCVGACSLAPVFVIGEETYG 144

Query: 159 DL-TPERLEEIIDAF 172
            + + +++ EI+  +
Sbjct: 145 RIDSKDKIAEILKRY 159


>gi|316935782|ref|YP_004110764.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
 gi|315603496|gb|ADU46031.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
          Length = 162

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   QE EGWVS A ++  A++L +    +  +ATFY+Q   SPVG    + +
Sbjct: 22  KAAMVEALKLVQEAEGWVSDAHLKEAADVLGVTAAEIDALATFYSQIFRSPVGDTV-ILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156
           C    C L G + + +    K+         DG  +   + C G C  AP+ ++G  +  
Sbjct: 81  CDGLSCYLCGGDAVRDAVMEKLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140

Query: 157 YEDLTPERLEEIIDAFSTG 175
              LTP+ L+ +I   + G
Sbjct: 141 VGPLTPDDLDALIGGAAVG 159


>gi|300245947|gb|ADJ94031.1| putative benzoate-degrading protein BamG [Clostridia bacterium
           enrichment culture clone BF]
          Length = 129

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  I TFY QF+L P+G    +QVC  T C L   EK+ E  + +   K  H + DG  +
Sbjct: 9   LYSIVTFYAQFRLEPIGDNL-IQVCHGTACHLADAEKISEAIQLESGAKSGHTSPDGKFT 67

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            E+V C G C   P++ + ++TY  ++PE   ++I
Sbjct: 68  VEKVACLGCCSLGPVITVNEETYARMSPEAARKLI 102


>gi|110589188|gb|ABG77103.1| NADH dehydrogenase I E subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 123

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           FS E    ++  +++YP    QSAV+  L   Q+  G W++ A ++ VA  LDMA I V 
Sbjct: 13  FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVY 72

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           E+ATFY+ ++L PVG +  + +C    CM+   ++++E
Sbjct: 73  EVATFYSMYELKPVG-KHKICICTNVSCMINNSDRIVE 109


>gi|254426024|ref|ZP_05039741.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
 gi|196188447|gb|EDX83412.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
          Length = 192

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L +AQE   ++S   +  VA  L +   +V  +ATFY  F L+P G  +   VC 
Sbjct: 48  ALIEVLHKAQELFDYLSPTLLAEVAKSLQLPLSQVYGVATFYHFFSLAPSGHHS-CTVCL 106

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G  +L+     ++  +P    +DG +S     C GAC  AP+V++        
Sbjct: 107 GTACYVKGAAQLLAKLEQRLGIQPGQTTADGEMSLSTARCLGACGIAPVVVVDDAIAGHQ 166

Query: 161 TPERLEEIIDA 171
           T E + + IDA
Sbjct: 167 TTETIIQRIDA 177


>gi|226327880|ref|ZP_03803398.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
 gi|225203584|gb|EEG85938.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
          Length = 181

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+  GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 48  RAASIEALKIVQKNRGWVEDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHIIRF 106

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       ++  P     DG  +     C G C   P +M+  DT+ 
Sbjct: 107 CDSVVCHITGYQGIQAAIEKHLNIIPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDDDTHS 166

Query: 159 DLTPERLEEIIDAF 172
            + PE +E +++ +
Sbjct: 167 FVKPEEIETLLEQY 180


>gi|253579945|ref|ZP_04857213.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848944|gb|EES76906.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
          Length = 160

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I+ Y   +  +++IP++   Q    ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIAFY--GKKPASLIPIMQDIQGVYRYLPEELLTYVAEQIGVTEAKAFSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACV 145
               G +  ++VC  T C +R    ++E    K+      + +D  + + E V C GAC 
Sbjct: 69  FDAKG-KYVIKVCDGTACHVRKSIPVLEELYKKLGLSKTKKTTDDMMFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP +M+ ++ Y  +TPE+ +E+ID    G+
Sbjct: 128 LAPTMMVNEEVYPRMTPEKADELIDKLRGGE 158


>gi|158340817|ref|YP_001521985.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
           subunit, chain E [Acaryochloris marina MBIC11017]
 gi|158311058|gb|ABW32671.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
           subunit, chain E [Acaryochloris marina MBIC11017]
          Length = 177

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +++I +L +AQE  G++ R  +  +A+ L +   +V  +ATFY  F L+P G    V VC
Sbjct: 36  NSLIEVLHKAQELFGYLERDILLHIAHSLKLPPSQVYGVATFYHFFSLTPSGRHTCV-VC 94

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154
             T C ++G   L+       H +      DG LS     C GAC +AP V     ++G 
Sbjct: 95  MGTACFVKGAASLLSTVEQIAHIQAGETTQDGGLSLSTARCLGACGSAPAVVLDGQVVGY 154

Query: 155 DTYEDLTPERLEEIID 170
            T E+L  +++ +++D
Sbjct: 155 QTSENLG-QQVTQMMD 169


>gi|255505333|ref|ZP_05345528.3| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
           14469]
 gi|255268421|gb|EET61626.1| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
           14469]
          Length = 172

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I+ Y   +  +++IP++   Q    ++    +  VA  + +   +   +ATFY  F 
Sbjct: 23  DEIIAFY--GKKPASLIPIMQDIQGVYRYLPGELLTYVAGQIGITEAKAFSVATFYENFS 80

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G +  ++VC  T C +R    ++E  + ++      H   D   + E V C GAC 
Sbjct: 81  FEPKG-KYIIKVCDGTACHVRKSAPILEAFQKELGLSAKKHTTDDMLFTVETVSCLGACG 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            AP VM+ +D +  +TPE+  ++I      Q D
Sbjct: 140 LAPTVMVNEDVHPKMTPEKAIDLIRELRGDQHD 172


>gi|124268892|ref|YP_001022896.1| NAD-dependent formate dehydrogenase subunit gamma [Methylibium
           petroleiphilum PM1]
 gi|124261667|gb|ABM96661.1| NAD-dependent formate dehydrogenase gamma subunit [Methylibium
           petroleiphilum PM1]
          Length = 161

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+Q G +   A+  +A  L+++   V  + T+Y  F+  P G R  +QVC 
Sbjct: 21  ALLPILHEVQDQLGCIPADAVPEIAGALNLSRAEVHGVITYYHHFRGEPAG-RHVIQVCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+     ++  +    +SDG  + E V C G C ++P ++I +  +  +
Sbjct: 80  AEACQALGAEALLTHAERRLVCRSHASSSDGRYTLEPVFCLGLCASSPAIVIDERLHARI 139

Query: 161 TPERLEEIIDAF 172
           +P   + +I A 
Sbjct: 140 SPAAFDRLIGAL 151


>gi|218244990|ref|YP_002370361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8801]
 gi|218165468|gb|ACK64205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8801]
          Length = 179

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +E +A  L +   RV  +ATFY  F L P G  + + V
Sbjct: 40  QDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPSGEHSCI-V 98

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++  K      D  +      C GAC  AP V+   +   
Sbjct: 99  CMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDGEVAG 158

Query: 159 DLTPE 163
            + PE
Sbjct: 159 KVEPE 163


>gi|218780115|ref|YP_002431433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761499|gb|ACL03965.1| Putative NADH:ubiquinone oxidoreductase 24 kD subunit, NuoE
           [Desulfatibacillum alkenivorans AK-01]
          Length = 154

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +  + +  +I  YP    Q +++ +L   QE  G++S   ++   + + +       +AT
Sbjct: 2   QQTVDIESIIDHYPG--VQESMVFILQDIQEAFGYISLENMQAACDHVGVPLTHAYSMAT 59

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F+L PVG    + VC  T C L+G  ++++    +++        D   + E V C
Sbjct: 60  FYKSFRLEPVGEHE-IHVCLGTACHLKGGPRIVDELERRLNVHAGATTEDMRYTLETVNC 118

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            GAC  AP+V++ K+    +T +++++ +   +
Sbjct: 119 LGACALAPVVVVDKEYVPKVTAKKIQKTLKTIT 151


>gi|302337011|ref|YP_003802217.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634196|gb|ADK79623.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 162

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           N +I  +  +R   A+IP+L  AQ   G++ +  ++ ++  L + Y  V  +  FY+ F 
Sbjct: 14  NAIIDSFLDTR--GALIPVLQNAQNLFGYLDQEVLKQISRRLQIPYSEVAGVVGFYSYFS 71

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G    V+VC  T C +RG ++++   ++ +         D   S E   C GAC  
Sbjct: 72  TVPRGEHI-VRVCLGTACYVRGGKEVLSALQDVLGIDVGETTEDRVFSLEIGRCFGACGL 130

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
           +P+VMI +D ++ + P  + +I+  + T
Sbjct: 131 SPVVMIDEDVHQRVKPATVRDILFPYRT 158


>gi|17228246|ref|NP_484794.1| bidirectional hydrogenase complex protein HoxE [Nostoc sp. PCC
           7120]
 gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [Nostoc sp. PCC 7120]
          Length = 164

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  +A+ L +   RV  +ATFY  F L+P G  + V V
Sbjct: 31  QDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCV-V 89

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G   ++               +DG LS     C GAC  AP V+       
Sbjct: 90  CTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTARCLGACGIAPAVVFDGKVLG 149

Query: 159 DLTPERLEE 167
           + TPE + E
Sbjct: 150 NQTPESVNE 158


>gi|319760613|ref|YP_004124551.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039327|gb|ADV33877.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 155

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           Y  +R  +A I  L   Q+  GWVS  AI ++A IL ++   V  +ATFY Q    PVG 
Sbjct: 18  YESTR--AASIEALKIVQKNYGWVSDDAIVLIAQILHISVSDVEGVATFYNQIFRQPVGQ 75

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++ C +  C + GC  + +     ++ K  +   D   +     C G C  +P++MI
Sbjct: 76  NI-IRYCDSIVCYVTGCNAIKKTLECILNIKIGNTTKDNKFTLLPTCCLGMCDKSPVIMI 134

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +D Y  +   ++ +I++ +
Sbjct: 135 NEDVYSHIVLSKINKILNLY 154


>gi|330809408|ref|YP_004353870.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377516|gb|AEA68866.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 160

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q   G+V  +A+  +A+ L+++   V  + +FY  F+ +P   R  +++C 
Sbjct: 24  ALLPILHAIQAGCGYVPDSAVPEIAHALNLSQAEVRGVISFYHDFRTTPPA-RHTLRLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L    R ++       ++DG++S   V C GACV +P + +  + +  +
Sbjct: 83  AESCKSMGAETLAAQLREQLALDDHGTSADGSISLRPVYCLGACVCSPALELDGELHARI 142

Query: 161 TPERLEEIID 170
           TPERL ++++
Sbjct: 143 TPERLRQLVN 152


>gi|51246060|ref|YP_065944.1| bidirectional hydrogenase complex protein HoxE [Desulfotalea
           psychrophila LSv54]
 gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (ubiquinone) I, chain E [Desulfotalea
           psychrophila LSv54]
          Length = 194

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q   G++ R A+E VA+ L +   +V  +ATFY  F L P G    V VC 
Sbjct: 57  ALIETLHTVQNTFGFIDRDAMEYVASGLHVPLSQVYSVATFYHYFTLKPPGEHTCV-VCT 115

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C + G   L+E   N +   P   + DG +S     C G+C  AP  +        L
Sbjct: 116 GTACYVSGSSALLETIHNTVGIDPGETSQDGKVSLLTTRCLGSCGLAPAAVFDGQVAGKL 175

Query: 161 TPERLEE 167
               +EE
Sbjct: 176 QSATIEE 182


>gi|269119250|ref|YP_003307427.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613128|gb|ACZ07496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 158

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + ++I +L +AQ   G++ R   E VA  L+ +   V  + +FY+ F + P G  A V V
Sbjct: 25  KGSLISVLHKAQGIFGYLPREIQEYVAEKLNESLANVYGVVSFYSFFTMVPKGEHA-VSV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
           C  T C +RG +K++   + ++  K    + DG  S + + C GAC  AP+V++G
Sbjct: 84  CMGTACYVRGADKVLGEFQKELGIKSGETSLDGKFSIDALRCVGACGIAPVVLVG 138


>gi|57234744|ref|YP_181190.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 154

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L+  Q +  ++SR  ++ V+  + +    V  IATFY+QF+L P G    V VC  
Sbjct: 23  LIPILLAFQRKFSYLSRDMMQSVSVYVGVPESSVYNIATFYSQFRLEPPGIHK-VHVCRG 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G E+L+     ++  K      D  +S + + C G C  AP + +    Y  L 
Sbjct: 82  TACHVMGAERLLRNIEKRLGIKAGETTPDNEISLDTINCAGICGLAPTLEVDGKLYTRLD 141

Query: 162 PERLEEII 169
              L  I+
Sbjct: 142 GSSLNRIL 149


>gi|332295876|ref|YP_004437799.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332178979|gb|AEE14668.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 156

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           ++I +L   QE  G++    +  +A  L+++  ++  + TFY  F+L+       +  C 
Sbjct: 22  SLIQILHGTQESIGYLPEEILSYIAEKLNISLSKIYGVVTFYNFFKLTKDAEHV-ITTCL 80

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYED 159
            T C ++G EK++    NK++ KP     D   + + V C G C  AP+++I GKD Y  
Sbjct: 81  GTACYVKGGEKILNALCNKLNIKPNEITKDNKFTVKTVRCVGCCGFAPVMIIDGKDIYGK 140

Query: 160 LTPERLEEIIDAF 172
           L+     EI++ +
Sbjct: 141 LSENEAIEILERY 153


>gi|317404655|gb|EFV85051.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           xylosoxidans C54]
          Length = 185

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q + G +   A++ +A  L+++   V  + TFY  F+  P G R  ++VC  
Sbjct: 51  LLPVLHAVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRSEPAG-RHTLEVCRA 109

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G E+L    R  +         DG  + E V C G C  +P VM+    +  +T
Sbjct: 110 ESCQAMGGEQLAAHARQALGCDFHASTRDGDFTLEPVYCLGLCAQSPAVMLDGQPHARVT 169

Query: 162 PERLEEII 169
           P +L+ ++
Sbjct: 170 PAKLDRLL 177


>gi|257058014|ref|YP_003135902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8802]
 gi|256588180|gb|ACU99066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8802]
          Length = 179

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +E +A  L +   RV  +ATFY  F L P G  + + V
Sbjct: 40  QDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPNGEHSCI-V 98

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++   + ++  K      D  +      C GAC  AP V+   +   
Sbjct: 99  CMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDGEVAG 158

Query: 159 DLTPE 163
            + PE
Sbjct: 159 KVEPE 163


>gi|255318319|ref|ZP_05359554.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
           radioresistens SK82]
 gi|262379063|ref|ZP_06072219.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           radioresistens SH164]
 gi|255304631|gb|EET83813.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
           radioresistens SK82]
 gi|262298520|gb|EEY86433.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           radioresistens SH164]
          Length = 169

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +   I  YP +R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY + 
Sbjct: 25  IQHHIGHYPYAR--AASLDALKCVQRRNGWVDDAQLNAIAQLLSISTADLEGVATFYNRI 82

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              PVG R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C 
Sbjct: 83  YRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCD 141

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P +MI  DT+  +    ++++++ +
Sbjct: 142 KGPTLMIDGDTHGLVEVTSIQQLLEKY 168


>gi|159186285|ref|NP_355959.2| formate dehydrogenase subunit gamma [Agrobacterium tumefaciens str.
           C58]
 gi|159141419|gb|AAK88744.2| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
           str. C58]
          Length = 159

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   QE+ G++  +A +++A+ L+++   V  + TFY  F+  P G R  +++C  
Sbjct: 28  LLPILHAVQEEFGYIPESAKQIIASALNISRAEVHGVVTFYPDFRDHPQG-RHVLKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G E L E  +N++  +     +DG+++ E V C G C  AP +M+  + +  L 
Sbjct: 87  EACQSMGGEPLAETIKNRLGLEWHETAADGSVTLEPVFCLGLCAQAPALMLDGEVHARLD 146

Query: 162 PERLEEII 169
            + L  I+
Sbjct: 147 DDCLGNIL 154


>gi|90416714|ref|ZP_01224644.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90331467|gb|EAS46703.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 162

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++ +Y  ++   A++PLL   Q   G+V  +A+ ++A  L+++   V  + +FY  F
Sbjct: 11  ISALVGQY--TQLPGALLPLLHAIQSDLGYVPDSAVPIIAKGLNLSRAEVHGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +PVG R  VQVC    C   G  +L    +  +        +DG ++ E V C G C 
Sbjct: 69  KTTPVG-RHTVQVCRAEACQSMGSRQLEAHAKQALGIDYGETTADGAVTLEPVYCLGNCA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            +P V I    Y  +  +  ++++    T +G
Sbjct: 128 CSPSVRIDDAIYARVDTDLFDDLMSGLLTEEG 159


>gi|227499380|ref|ZP_03929491.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
           ATCC 35098]
 gi|227218584|gb|EEI83824.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
           ATCC 35098]
          Length = 163

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P L + Q    ++    ++++A  L ++   +  +ATFY+QF L   G    + V
Sbjct: 26  KGAVMPALQKCQNLFSYIPEPVVDLMALKLGVSSSEIYGVATFYSQFSLKAKGEH-EICV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY- 157
           C  T C + G +++++   +K+  +    + DG ++  E  C G C  +P+VMI  D + 
Sbjct: 85  CLGTACYVNGADRILKSLSDKLGVEVGDTSQDGKITLSEARCVGECGKSPVVMIDGDEFR 144

Query: 158 EDLTPERLEEIID 170
           E++    +++II+
Sbjct: 145 ENVELSDIDDIIN 157


>gi|288959750|ref|YP_003450090.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
 gi|288912058|dbj|BAI73546.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
          Length = 182

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   QE+ G++   AI ++A  L+++   V  + +FY +F+    G R  ++V
Sbjct: 23  RGALLPILHALQEEFGYIDEEAIPLLATELNLSRADVHGVVSFYHEFRREKPG-RHIIKV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G   L++  + ++        +DG  + E V C G C  +P VMI ++ + 
Sbjct: 82  CRAEACQSMGANALVDHIKTRLQVDFHGTTADGAFTLEPVFCLGNCALSPAVMIDENLHG 141

Query: 159 DLTPERLEEI 168
            ++P+R + +
Sbjct: 142 RVSPDRFDAL 151


>gi|308271654|emb|CBX28262.1| hypothetical protein N47_G35860 [uncultured Desulfobacterium sp.]
          Length = 162

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L   Q+   ++  AAI  +A  + +    +  +ATFY+ F L P G R  + +C  
Sbjct: 32  LIMILQGIQKVYNYLPGAAISYLAVKIGIPLSHIYGVATFYSTFSLKPRG-RNIISICLG 90

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E++ E   N ++        D   + E V C G C   P++ I +D +  +T
Sbjct: 91  TACHVRGGERIRESLTNTLNITDGQTTEDKRFTLESVRCIGCCSLGPVIKINEDMHGRIT 150

Query: 162 PERLEEIIDAF 172
           P+++  I+  +
Sbjct: 151 PDKVNPILSHY 161


>gi|302875115|ref|YP_003843748.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|307690259|ref|ZP_07632705.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           cellulovorans 743B]
 gi|302577972|gb|ADL51984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 160

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++ +I +L +AQE  G++ R     ++  L + Y +V  + TFY+ F  +  G    + V
Sbjct: 26  EAHLIVILHKAQELFGYLPREVQVFISKKLGIPYSKVYGVVTFYSFFSTTAKGKYV-INV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG  +++E    K+         DG  + + + C GAC  AP+V +    Y 
Sbjct: 85  CKGTACFVRGAGEILEEFEKKLEINQGETTQDGKYTIDTLRCVGACGLAPVVSVNGKVYG 144

Query: 159 DLTPERLEEIIDAFS 173
               + ++++I  +S
Sbjct: 145 HFNKKDVDKLIQEYS 159


>gi|218514552|ref|ZP_03511392.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           8C-3]
          Length = 115

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFYT F
Sbjct: 7   IEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFYTLF 64

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
              PVG   H+Q+C    CML   E L+
Sbjct: 65  HTEPVGM-FHLQLCDNVSCMLCRSEDLL 91


>gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 607

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
           + +  +A  +D+    +    +FYT F   P   +  ++VC + PC + G   + +V  N
Sbjct: 40  SVLNTLAMKMDLPQSAISGFTSFYTMFSTEPR-AKFIIRVCKSGPCHVMGARTIFDVIEN 98

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +  +     +DG    EE EC G C  AP +M+  D + +L+   ++EI+D++S 
Sbjct: 99  HLGIRAGETTADGLFHLEECECLGLCSAAPAMMVNYDMHGNLSESNIKEILDSYSA 154


>gi|262280143|ref|ZP_06057928.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260494|gb|EEY79227.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
           RUH2202]
          Length = 169

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  +ATFY +    P
Sbjct: 29  IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P 
Sbjct: 87  VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPT 145

Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
           +MI +DT+  +    ++++++ +
Sbjct: 146 LMIDEDTHGLVEVTSIKQLLEKY 168


>gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E subunit [Nostoc sp. PCC 7422]
          Length = 170

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  +A  L +   RV  +ATFY  F L+P GT   V V
Sbjct: 36  QDALIEVLHKAQELFGYLENDLLHYIAQSLKLPPSRVYGVATFYHLFSLAPKGTHTCV-V 94

Query: 99  CGTTPCMLRGCEKL---IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C  T C ++G E L   +E C  K+H      +S+  LS     C GAC  AP V+    
Sbjct: 95  CTGTACYVKGAENLLTTVEKCA-KVHVGETTPSSE--LSLLTARCLGACGIAPAVVFDGT 151

Query: 156 TYEDLTPERLEEIID 170
                TPE + E I+
Sbjct: 152 VCGHQTPELVTEQIE 166


>gi|182413364|ref|YP_001818430.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177840578|gb|ACB74830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 228

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L   Q Q G++ R     ++  L +   R+ E+ TFY  F+L P G   +V VC  
Sbjct: 90  LIMILHAIQNQHGYIPREVAMELSRELGVKLARIYEVTTFYHYFKLQPPGAH-NVVVCNG 148

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C L+G   ++  CRN++       ++D     + V C G C  +P +++   T+  + 
Sbjct: 149 TACYLKGAGDILGECRNQLGIAEGQTSADRQFHLDTVRCIGCCGMSPAIVVDGKTHGRVK 208

Query: 162 PERLEEIIDA 171
              +  II+A
Sbjct: 209 TSDVAGIINA 218


>gi|332715499|ref|YP_004442965.1| NAD-dependent formate dehydrogenase subunit gamma [Agrobacterium
           sp. H13-3]
 gi|325062184|gb|ADY65874.1| NAD-dependent formate dehydrogenase gamma subunit [Agrobacterium
           sp. H13-3]
          Length = 178

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L R QE+ G+V  +  +V+A  L+++   V  + +FY  F+  P G R  +++C  
Sbjct: 47  MLPILHRVQEEFGYVPDSVKQVIALALNVSRAEVHGVVSFYPDFRDHP-GGRHVLKLCRA 105

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   GCE L +  + K+         DG+++ E V C G C  AP +M+  + +  + 
Sbjct: 106 EACQSMGCESLADTIKGKLGLDWHQTAKDGSVTLEPVFCLGLCAQAPALMLDGEVHARVD 165

Query: 162 PERLEEII 169
              L +I+
Sbjct: 166 EHCLGDIL 173


>gi|170751377|ref|YP_001757637.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657899|gb|ACB26954.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 157

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +  + A +P+L   QE  G+V   A+ ++A+ L+++   V    TFY  F+  P G R  
Sbjct: 20  THLEGATLPILHALQETFGYVDSGAVPLIADALNLSRAEVHGCITFYHDFRAHPAG-RHE 78

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V++C    C   G +KL      ++        +DG+ + E V C G C N P  ++  +
Sbjct: 79  VKLCRAEACQAMGSDKLHREILGRLGCGWHETTADGSATVEPVYCLGLCANGPAALVDGE 138

Query: 156 TYEDLTPERLEEII 169
               LT + LE  +
Sbjct: 139 PVAHLTADALEAAL 152


>gi|299771416|ref|YP_003733442.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
 gi|298701504|gb|ADI92069.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
          Length = 169

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  +ATFY +    P
Sbjct: 29  IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P 
Sbjct: 87  VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPT 145

Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
           +MI +DT+  +    ++++++ +
Sbjct: 146 LMIDEDTHGLVEVTSVKQLLEKY 168


>gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate
           dehydrogenase gamma subunit) [Janthinobacterium sp.
           Marseille]
 gi|151281625|gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate
           dehydrogenase gamma subunit) [Janthinobacterium sp.
           Marseille]
          Length = 159

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q   G++  + +  +A  L+++   V  + T+Y  F+  PVG    VQ+C
Sbjct: 24  GALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVHGVITYYHFFRQHPVGEHV-VQIC 82

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C  RGCE L +  +  +         D   + + V C G C + P + I  D Y  
Sbjct: 83  RAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQTVYCLGQCASGPAIQIDDDLYAR 142

Query: 160 LTPERLEEIIDA 171
           ++ E+   +I A
Sbjct: 143 VSKEKFNSLIQA 154


>gi|300087733|ref|YP_003758255.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527466|gb|ADJ25934.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 156

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+EV+ ++      S ++ +L   Q Q  ++ R +I  +A  LD+   RV  +ATF+  F
Sbjct: 12  VDEVVVKHNGD--PSMLVAMLQDVQAQLYFLPRESIVRIAEKLDIPLTRVYSVATFFRAF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G + +++VC  T C +RG EK+++    ++         D   + E   C GAC 
Sbjct: 70  SLKPRG-KHNLKVCMGTACHVRGAEKVLDKIETELCVCAGETTKDMKYTIETANCVGACA 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
             P+V++  +    +T ++++ I++
Sbjct: 129 LGPVVVVDNEFVGQMTTDKVKTILE 153


>gi|219849355|ref|YP_002463788.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aggregans DSM 9485]
 gi|219543614|gb|ACL25352.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aggregans DSM 9485]
          Length = 173

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +A+I +L +AQE  G++S   +  +A  L +   RV  +ATFY  F L+P G R    VC
Sbjct: 37  NALIEVLHKAQELYGFLSPELLSEIAQRLHLPPSRVYGVATFYHFFSLAPQG-RHSCTVC 95

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-----MIGK 154
             T C +RG   L+         K  H + DG LS     C GAC  AP V     +IG 
Sbjct: 96  LGTACYVRGAAILLRELETLSGIKAGHTSPDGQLSLLTARCLGACGIAPAVVLDGEVIGH 155

Query: 155 DTYEDLT 161
               DLT
Sbjct: 156 ADRSDLT 162


>gi|307823548|ref|ZP_07653777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307735533|gb|EFO06381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 158

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+  G++   ++  +A  L ++   V  + +FY  F+ +P G +  + +C 
Sbjct: 24  ALLPILHGIQDAMGYIPAESVPYIATALSLSRAEVHGVISFYHYFRDTPPGVQT-IHLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G  KL E  ++K+        +DG  S E V C G C  +P + IGK+ Y  +
Sbjct: 83  AESCQSMGGRKLEEHVKSKLGIDFHETTADGKFSLEPVYCLGNCACSPAMQIGKEIYGRV 142

Query: 161 TPERLEEIID 170
           + +  + +I+
Sbjct: 143 SADSFDAVIN 152


>gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
 gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
          Length = 721

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I LL   Q   G++ RAA+ V+A  L+++   V  + ++Y   +  P G R  +Q+C
Sbjct: 43  GSLIELLHSLQNALGFIPRAAVPVIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 101

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158
               C  RG + L    +  +  +    ++DG+++ E V C G C  +P VM+ + + + 
Sbjct: 102 RAEACKSRGGDALFAHAQATLGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 161

Query: 159 DLTPERLEEIID 170
            +T +RL+ +++
Sbjct: 162 RMTADRLDALLE 173


>gi|164686659|ref|ZP_02210687.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
           16795]
 gi|164604049|gb|EDQ97514.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
           16795]
          Length = 166

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +SA+I +L  AQ   G++ +     +A+ L ++  +V  + +FY+ F  +P+G    + V
Sbjct: 27  ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIG-EYKISV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++     ++  K      D   + E + C GAC  AP+V++    Y 
Sbjct: 86  CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145

Query: 159 DLTPERLEEIIDAF 172
             TP+ + +I+D +
Sbjct: 146 QATPDDVSKILDNY 159


>gi|291549369|emb|CBL25631.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus torques
           L2-14]
          Length = 159

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I++Y     + ++IP++   QE+  ++    +  VA  L ++  +   +A+FY  F 
Sbjct: 11  DEIIAQYTCE--EKSLIPIIQGIQEEYRYLPPELLTYVAEKLGISEAKAYSVASFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
               G    ++VC  T C +R    ++E    ++   K  H   D   + E V C GAC 
Sbjct: 69  FEAKGKYV-IKVCDGTACHVRKSIPILEGLYKELGLGKKKHTTDDQLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP VM+  + +  +TPE++ E+I
Sbjct: 128 LAPAVMVNDEVHPKMTPEKMSELI 151


>gi|262376774|ref|ZP_06070002.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
 gi|262308484|gb|EEY89619.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
          Length = 169

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           +  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  +ATFY +    P
Sbjct: 29  MGHYPYPR--AACLDALKCVQRRNGWVDDAQMNAIAQMLSMSVADLEGVATFYNRIYRQP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C   P 
Sbjct: 87  VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCDKGPT 145

Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
           +MI +DT+  +    ++++++ +
Sbjct: 146 LMIDEDTHGLVEVTSVKQLLEKY 168


>gi|260892246|ref|YP_003238343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864387|gb|ACX51493.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
          Length = 158

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E+     E++++Y     +  +  +L   Q + G++   A+EVVA  + ++   +  +A+
Sbjct: 3   EAVTVTREIVAKYKGR--EGVLTHILQDIQGRFGYLPPEAMEVVAEEMGVSLAELYGMAS 60

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY +F  +P G +  ++VC  T C +RG E+++     ++  K    + D   + E V C
Sbjct: 61  FYARFYFTPRG-KTVIKVCRGTACHVRGSERVLAKFSEELGLKEGETSPDLKFTLEAVNC 119

Query: 141 QGACVNAPMVMIGKDTYEDLTPERL 165
            G C  AP+VMI +  +    P +L
Sbjct: 120 VGCCALAPVVMINEKVFTANDPGKL 144


>gi|298507476|gb|ADI86199.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
          Length = 162

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L +  ++V E+ATFY      PVG R  + V
Sbjct: 21  REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRV-IHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E L+      ++ +P    +DG  +     C G C  AP +M+G   + 
Sbjct: 80  CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139

Query: 159 DLTPERLEEII 169
            +T ER  EI+
Sbjct: 140 RVTLERAGEIL 150


>gi|222099433|ref|YP_002534001.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
           4359]
 gi|221571823|gb|ACM22635.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
           4359]
          Length = 170

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 53  EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL 112
           E ++   A E+V+  L++   +V E+ TFYT F   P G +  ++VC + PC +    ++
Sbjct: 47  ENFIPPEAAEIVSEELNVPLSKVYEVLTFYTMFSTKPKG-KYVIRVCESLPCHVENGREV 105

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           ++  +  +         D   + E   C G C  AP++M+  + Y ++TPE+++ +I+
Sbjct: 106 VKALKETLKIDFGQTTPDNMFTLEMTSCLGLCGVAPVIMVNDEYYGNMTPEKVKNLIN 163


>gi|297203643|ref|ZP_06921040.1| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
 gi|297148464|gb|EDY61257.2| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   Q + G V + A+ V+A  L+++   V  + TFY  F+  P G R  V++
Sbjct: 91  RGALLPVLHAVQAELGHVPQEAVPVLAEELNLSRADVHGVVTFYHDFRREPAG-RTTVRI 149

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           C    C   G ++L+   R      PL    +DG+++ E+V C G C   P V      Y
Sbjct: 150 CRAEACQALGADQLVSYARES--GLPLGETAADGSVTVEQVFCLGNCALGPSVEANGRLY 207

Query: 158 EDLTPERLEEIIDA 171
             + P RL  I++ 
Sbjct: 208 GRVGPARLGSILNG 221


>gi|39998532|ref|NP_954483.1| NADH dehydrogenase subunit E [Geobacter sulfurreducens PCA]
 gi|39985479|gb|AAR36833.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
          Length = 162

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L +  ++V E+ATFY      PVG R  + V
Sbjct: 21  REAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRV-IHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E L+      ++ +P    +DG  +     C G C  AP +M+G   + 
Sbjct: 80  CDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLPCCCLGNCGEAPTLMVGDTLHG 139

Query: 159 DLTPERLEEII 169
            +T ER  EI+
Sbjct: 140 RVTLERAGEIL 150


>gi|73748665|ref|YP_307904.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
 gi|289432691|ref|YP_003462564.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
 gi|288946411|gb|ADC74108.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 161

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L++ Q++  W+ + A+  V+  L++   RV  +ATFY  F + P G + +V VC  
Sbjct: 31  LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G  K+++     +  K     SD   S E V C G C   P+V++    +  L 
Sbjct: 90  TACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149

Query: 162 PERLEEII 169
               E+I+
Sbjct: 150 TADAEKIL 157


>gi|150391801|ref|YP_001321850.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951663|gb|ABR50191.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 160

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L  AQ+  G++     + ++  +++    +  + TFY+QF L P G    + V
Sbjct: 25  KGPLMPVLHEAQKIFGYIPLEVQKRISEEIEIPLSEIYGVITFYSQFSLEPKGDYV-IGV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G + +I+        KP   + DG  S     C GAC  AP++ + +D Y 
Sbjct: 84  CMGTACYVKGSQPIIDKISELTGTKPGGNSEDGRFSLVATRCIGACGLAPVLTVNEDVYG 143

Query: 159 DLTPERLEEIIDAF 172
            L  E +  I++ +
Sbjct: 144 RLKLEDIPGIVEKY 157


>gi|160936131|ref|ZP_02083504.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440941|gb|EDP18665.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
           BAA-613]
          Length = 164

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P++ +AQE  G++      ++++ + +   +V  ++TFY QF L P G +  + VC
Sbjct: 32  GALMPVMQKAQEIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++       +        +DG  S +   C GAC  AP++MI  + Y  
Sbjct: 91  LGTACYVKGSGEIFRKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150

Query: 160 LTPERLEEIIDAFS 173
           LT + +  I+  ++
Sbjct: 151 LTVDDIPGILAKYN 164


>gi|51894342|ref|YP_077033.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858031|dbj|BAD42189.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
           thermophilum IAM 14863]
          Length = 186

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQE  G++       VA  L +    V  + TFY  F L+PVG +  + VC  
Sbjct: 34  LIAVLHKAQEIFGFLPEEVQRHVAAALHVPPSEVYGVVTFYNYFTLTPVG-KYPINVCMG 92

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G  +L+ +   ++  +P     DG  S E   C GAC  AP+V +  + +  LT
Sbjct: 93  TACYVQGAGRLLSLFERELGIQPGQVTPDGLFSLEVCRCLGACGLAPVVTVAGEVHGKLT 152


>gi|147669424|ref|YP_001214242.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|146270372|gb|ABQ17364.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
          Length = 161

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L++ Q++  W+ + A+  V+  L++   RV  +ATFY  F + P G + +V VC  
Sbjct: 31  LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G  K+++     +  K     SD   S E V C G C   P+V++    +  L 
Sbjct: 90  TACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149

Query: 162 PERLEEII 169
               E+I+
Sbjct: 150 TADAEKIL 157


>gi|226953549|ref|ZP_03824013.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
 gi|262373372|ref|ZP_06066651.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
 gi|294649463|ref|ZP_06726887.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835727|gb|EEH68110.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
 gi|262313397|gb|EEY94482.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
 gi|292824633|gb|EFF83412.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 169

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I  YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    P
Sbjct: 29  IGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C   P 
Sbjct: 87  VG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPT 145

Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
           +MI +DT+  +    ++++++ +
Sbjct: 146 LMIDEDTHGLVDVSSVKQLLEKY 168


>gi|104780975|ref|YP_607473.1| formate dehydrogenase subunit gamma [Pseudomonas entomophila L48]
 gi|95109962|emb|CAK14667.1| putative formate dehydrogenase, gamma subunit [Pseudomonas
           entomophila L48]
          Length = 161

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   Q   G +  AA+  +A+ L+++   V  + +FY  F+ +P   R  +++C
Sbjct: 23  GALLPVLHAIQAGIGHIPDAAVGEIAHALNLSLAEVRGVISFYHDFRTTPP-ARHTLRLC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C  RG E L    R ++       + DG LS   V C GAC  +P + +    +  
Sbjct: 82  RAESCQSRGAEALAAQLREQLGLDDHGTSEDGALSLRPVYCLGACACSPALELDGQLHAR 141

Query: 160 LTPERLEEIIDAFSTG 175
           +TPERL  ++     G
Sbjct: 142 VTPERLRALVAGCREG 157


>gi|57235005|ref|YP_180895.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 155

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 23  AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +IW   V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + 
Sbjct: 3   SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMI 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+    +  G +  +++C + PC L G E +++   + +  +P     D   + E V 
Sbjct: 61  TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVP 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P ++I    Y  LT + + E++D   T
Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   QE+ G +  A  + +A  L++    V  + +FY+ +   P G +  ++ C +
Sbjct: 37  LMPVLQAVQEEIGCLPPAVQDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCES 95

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
            PC ++G + L+E  + ++     H   DG  + E   C G C  AP + I +  + +LT
Sbjct: 96  PPCHIQGADNLLEFTQAELGVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLT 155

Query: 162 PERLEEIIDAFSTGQ 176
            +++ +I+  +  G+
Sbjct: 156 KDKIRQILADYRAGK 170


>gi|270307596|ref|YP_003329654.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
 gi|270153488|gb|ACZ61326.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
          Length = 155

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 23  AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +IW   V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + 
Sbjct: 3   SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLGIPSIDIYGMI 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+    +  G +  +++C + PC L G E +++   + +  +P     D   + E V 
Sbjct: 61  TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVP 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P ++I    Y  LT + + E++D   T
Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|301059362|ref|ZP_07200289.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300446591|gb|EFK10429.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 162

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           + SR+  S+    +IP+L   QE  G++  +A   ++   ++    +  +ATFY+ F L 
Sbjct: 21  ITSRHKDSK--GGLIPILHEVQELYGYLPDSAFVRISKTCNIPLSEIYGVATFYSFFSLK 78

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  + VC  T C ++G  ++++  R ++         DG  S     C GAC  AP
Sbjct: 79  PKG-KYEISVCMGTACYVKGAGRILDRIREELDIDVGDCTEDGKFSLSACRCLGACGLAP 137

Query: 149 MVMIGKDTYEDLTPERLEEIIDAF 172
           ++ + +  +  L    + E+++ +
Sbjct: 138 VIKVNEQVHGRLALADVSEVLNQY 161


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +N++IS+Y  S  Q  +I +L +AQE  G++    +  +A+ + +    V  + TFY+ F
Sbjct: 13  LNKIISQYKDSPGQ--LIRILQKAQELYGYLPEDILGYIADKVGLPLSEVAGVVTFYSLF 70

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + VC  T C ++G   ++E  + ++        +DG  +     C GAC 
Sbjct: 71  TTKPKGKHT-ISVCLGTACYVKGAPNVLEAIKKELAVDMDQTTADGLFTLTNTRCVGACG 129

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP V+I  + +  +    + E+I  +
Sbjct: 130 LAPAVLIDGEVHGRVKASDVPELIRQY 156


>gi|262369336|ref|ZP_06062664.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
 gi|262315404|gb|EEY96443.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
          Length = 169

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I  YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    P
Sbjct: 29  IGHYPYPR--AASLDALKCVQRRNGWVDDAQLNAIAQLLTISVADLEGVATFYNRIYRQP 86

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           VG R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C   P 
Sbjct: 87  VG-RNVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLPICCLGNCDKGPT 145

Query: 150 VMIGKDTYEDLTPERLEEIIDAF 172
           +M+ +DT+  +    ++++++ +
Sbjct: 146 LMVNEDTHGLVEVSSVKQLLEKY 168


>gi|73748097|ref|YP_307336.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147668875|ref|YP_001213693.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|289432123|ref|YP_003461996.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146269823|gb|ABQ16815.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|288945843|gb|ADC73540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 155

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 23  AIW---VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +IW   V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + 
Sbjct: 3   SIWKEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMI 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+    +  G +  +++C + PC L G E +++   + +  +P     D   + E V 
Sbjct: 61  TFYSLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLELVP 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P ++I    Y  LT + + E++D   T
Sbjct: 120 CLGLCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|257065151|ref|YP_003144823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792804|gb|ACV23474.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 162

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E+I  YP    Q   +  +   Q    ++    +  +A  L     ++  +ATFY   
Sbjct: 10  VKEIIEAYPAD--QRFALAAMQDMQHAFNYIPEEGLAALAEYLGCPQAQLYSMATFYKAL 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G    V++C  T C LRG   L    +  +  +P     DG  S E V C G+C 
Sbjct: 68  SLTPKGDHI-VKICNGTACHLRGSMNLATELKRDLGVEPGETTEDGKFSVELVNCLGSCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP++++    +  L  E++  II+ ++
Sbjct: 127 LAPVMVVDGTYHNKLRVEQIPGIIERYA 154


>gi|56751244|ref|YP_171945.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
           elongatus PCC 6301]
 gi|81299089|ref|YP_399297.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
           elongatus PCC 7942]
 gi|3947770|emb|CAA73872.1| hoxE [Synechococcus elongatus PCC 6301]
 gi|56686203|dbj|BAD79425.1| NADH dehydrogenase I chain E [Synechococcus elongatus PCC 6301]
 gi|81167970|gb|ABB56310.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like [Synechococcus
           elongatus PCC 7942]
          Length = 165

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 1/115 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L  AQ   G++ R  ++ VA  L +   +V  +A+FY  FQL+P G R    VC 
Sbjct: 30  ALIEILHEAQSLYGYLDRELLQWVAEQLALPRSKVYGVASFYHLFQLNPSG-RHRCHVCL 88

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
            T C ++G + +++    ++  +     +DG++S   V C GAC  AP+V+   D
Sbjct: 89  GTACYVKGSQAILDCLIAELGIREGETTNDGSVSLGTVRCVGACGIAPVVVYDGD 143


>gi|260588481|ref|ZP_05854394.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
 gi|260540956|gb|EEX21525.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
          Length = 159

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  S++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G +  ++VC  T C +R    ++E  + ++   K  H   D   + E V C GAC 
Sbjct: 69  FEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKKHTTDDMLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP + +  + Y  +TPE+   +I
Sbjct: 128 LAPTMTVNNEVYPSMTPEKALNLI 151


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++EVI RY  S  Q  +I LL +AQE  G++  A    +A  +D+    V  + +FY+ 
Sbjct: 19  LLDEVIDRYKDSPGQ--LIRLLHKAQEIFGYLPEAVQCHIAERMDLPVSEVAGVVSFYSL 76

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P G    V VC  T C ++G  +++   + ++        +DG  +  +  C GAC
Sbjct: 77  FSRQPKGKHT-VSVCMGTACYVKGAPEVLTAIKKELSIDLGQTTADGMFTLTDTRCVGAC 135

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             AP ++I  + +  +    +  ++D +
Sbjct: 136 GLAPAIVIDGEVHGRMKAADVPALLDGY 163


>gi|331696854|ref|YP_004333093.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951543|gb|AEA25240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 158

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q + G V  + + ++A  L+++   V  + TFY  F+ +P G R  V+VC  
Sbjct: 28  LLPILHAVQAELGHVPPSVVPLLAERLNLSRAEVHGVVTFYRDFRAAPPG-RVTVRVCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G + L+E     +  +      DG ++ +EV C G C   P V +G   +  +T
Sbjct: 87  EACQAVGGQALLEHAVASLGVERGETTPDGAVTLDEVFCLGNCALGPAVQVGDRLHGRVT 146

Query: 162 PERLEEII 169
           P RL+ +I
Sbjct: 147 PARLDALI 154


>gi|293609136|ref|ZP_06691439.1| predicted protein [Acinetobacter sp. SH024]
 gi|292829709|gb|EFF88071.1| predicted protein [Acinetobacter sp. SH024]
 gi|325121084|gb|ADY80607.1| NADH dehydrogenase I chain E [Acinetobacter calcoaceticus PHEA-2]
          Length = 169

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|331082242|ref|ZP_08331369.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403036|gb|EGG82601.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 159

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  S++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G +  ++VC  T C +R    ++E  + ++   K  H   D   + E V C GAC 
Sbjct: 69  FEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKQHTTDDMLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP + +  + Y  +TPE+   +I
Sbjct: 128 LAPTMTVNNEVYPSMTPEKALNLI 151


>gi|298293799|ref|YP_003695738.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
           DSM 506]
 gi|296930310|gb|ADH91119.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
           DSM 506]
          Length = 157

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    +SEE A  V E  S       +  ++P+L   QE  G+V  A + ++A +L+++ 
Sbjct: 2   PHYEPWSEERARAVIEEFSHL-----EGPLMPMLHAVQETFGYVPEAVVPMLAEMLNISR 56

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  + TFY  F+  P G R  +++C    C   G + L +   +++  K     +DG 
Sbjct: 57  AEVHGVVTFYHDFRHEPAG-RHVLKLCRAEACQAAGGDALADHAEHRLGCKLGETTADGR 115

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           ++ E + C G C  AP  M+       L   RL+ +I
Sbjct: 116 VTVEPIYCLGLCATAPSAMLDGRIVARLNERRLDALI 152


>gi|169634178|ref|YP_001707914.1| NADH dehydrogenase subunit E [Acinetobacter baumannii SDF]
 gi|169152970|emb|CAP02016.1| NADH dehydrogenase I chain E [Acinetobacter baumannii]
          Length = 169

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L EV + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEVFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|239627942|ref|ZP_04670973.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47_FAA]
 gi|239518088|gb|EEQ57954.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47FAA]
          Length = 164

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P++ +AQ+  G++      ++++ + +   +V  ++TFY QF L P G +  V VC
Sbjct: 32  GALMPVMQKAQDIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKVSVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++       +        +DG  S +   C GAC  AP++MI  + Y  
Sbjct: 91  LGTACYVKGSGEIFSKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150

Query: 160 LTPERLEEIIDAFS 173
           LT + +  I+  ++
Sbjct: 151 LTVDDIPGILAKYN 164


>gi|108744328|gb|ABG02413.1| FdsG [Xanthobacter flavus]
          Length = 164

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+    QE  G+V   A+ ++A+ L+++   V  + TFY  F+  P G R  V++
Sbjct: 23  EGATMPIFHALQETFGFVPDPAVPMIADSLNLSRAEVYGVLTFYHDFRREPPG-RHVVKL 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L    + K+  +    ++DG ++ E + C G C  AP  ++      
Sbjct: 82  CAAEACQSVGGKALAAYAQEKLDVEMGETSADGRVTLEPIYCLGLCACAPAALVDGQLMG 141

Query: 159 DLTPERLEEIIDAFSTGQ 176
            L  + ++EI D  ++G+
Sbjct: 142 RLDRDAIDEIADCIASGK 159


>gi|126665579|ref|ZP_01736561.1| ATP synthase subunit E [Marinobacter sp. ELB17]
 gi|126630207|gb|EBA00823.1| ATP synthase subunit E [Marinobacter sp. ELB17]
          Length = 178

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G+V   A+ ++A +L      +  + +FY  F+  P G+   ++VC 
Sbjct: 40  ALLPILHAIQDRVGYVPEDAVPIIAEMLQQTRADIHGVISFYHHFRTHPSGSNL-LEVCR 98

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG   L    + ++        +D   +   V C G C   P + +  D    +
Sbjct: 99  AEACQARGGRALERHVQERLSVGYHDTTADNEFTLVPVYCLGNCACGPSIRVNNDIIGRV 158

Query: 161 TPERLEEIIDAFST 174
           TP++ ++++DA +T
Sbjct: 159 TPQKFDQLVDALTT 172


>gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 638

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
           +S   +  VA  +++    V     FYT F   P   +  ++VC + PC + G   + + 
Sbjct: 67  LSPETLNAVAEAMNLPQSTVAGFVGFYTMFSTRPR-AKFLIRVCKSGPCHVMGARTIFDY 125

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
               +   P    +DG    E  EC G C  AP +MI  D + +LT ER+  I+D + +
Sbjct: 126 VEKHLGISPGQTTADGLFHLEACECLGICSVAPAMMINYDLHGNLTEERIATILDGYRS 184


>gi|284009323|emb|CBA76484.1| NADH-quinone oxidoreductase chain E [Arsenophonus nasoniae]
          Length = 153

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 20  RAASIEALKIVQKKRGWVEDGAIYAIASLLGIPASDVEGVATFYSQIYRQPVG-RHIIRY 78

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +       +   P    +DG  +     C G C   P +MI +DT+ 
Sbjct: 79  CDSVVCHITGYQGIETEIIKLLQIAPGQTTADGRFTLLPTCCLGNCDKGPTMMIDEDTHS 138

Query: 159 DLTPERLEEIIDAF 172
            + P  ++ +++ +
Sbjct: 139 HVKPSDIQRLLEQY 152


>gi|283850903|ref|ZP_06368189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283573826|gb|EFC21800.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 166

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R + A I ++   Q   G++   A+E  A +L M  + +  +ATFY      PVG R  +
Sbjct: 20  RTREAAIDVMYALQRHYGYLCDEAMEYAARLLGMTTLELESLATFYDFLYRRPVG-RYVI 78

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            VC +  C +   + + +     +   P     DG  +     C G C NAP ++I    
Sbjct: 79  HVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAACIGNCHNAPTMLINGRF 138

Query: 157 YEDLTPERLEEIID 170
           Y+ L PE++  I+D
Sbjct: 139 YDRLHPEKINAILD 152


>gi|87120637|ref|ZP_01076531.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp.
           MED121]
 gi|86164280|gb|EAQ65551.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Marinomonas sp.
           MED121]
          Length = 189

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q Q G+V  +++ ++   L+++   V  + TFY  F   P G R  ++VC  
Sbjct: 45  LLPILHEVQHQLGYVPDSSLPIIGKALNISRAEVHGVVTFYHHFSSKPRG-RHIIEVCRA 103

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G   L    ++ +         D  ++ E V C G C  +P + +G + Y  + 
Sbjct: 104 ESCQSMGGRDLEAHAKSALGLDWYQTTMDKEITLEPVFCLGNCACSPAIRVGDEVYGRMD 163

Query: 162 PERLEEIIDAFST 174
            E+ +EI+D   T
Sbjct: 164 AEQFDEIVDELRT 176


>gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum
           seropedicae SmR1]
 gi|300073591|gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L   QE+ G++   A+ ++A  L+++   V  + +FY  F+  P G R  VQVC
Sbjct: 24  GAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAG-RHVVQVC 82

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C  RG E L E  +N +       ++DG  + E V C G C   P + +  + +  
Sbjct: 83  RAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLTLDDELHAR 142

Query: 160 LTPERLEEIIDA 171
           +  ++ + +I A
Sbjct: 143 VDADKFKRLIQA 154


>gi|254282625|ref|ZP_04957593.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
           NOR51-B]
 gi|219678828|gb|EED35177.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
           NOR51-B]
          Length = 154

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
           C+ A++PLL   Q Q G +  AAI+ +A  L+++   V  + +FY  F+ SP G    VQ
Sbjct: 15  CEGALLPLLHAVQAQWGHIPDAAIDPIARELNLSAAEVHGVISFYHDFKTSPQGEHL-VQ 73

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC    C  RG   L      ++          G ++ E V C G C   P + I  D Y
Sbjct: 74  VCCAEACQARGSRSLESYATQRLGIDYGETTVSGRVTLERVYCLGNCACGPSLRIDDDVY 133


>gi|220909417|ref|YP_002484728.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7425]
 gi|219866028|gb|ACL46367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7425]
          Length = 176

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L +AQE  G++    +  +A  L +   RV  +ATFY  F L P G    V VC 
Sbjct: 43  ALIEVLHKAQESFGYLEEEVLVYIARGLKLPLSRVYGVATFYHLFSLKPSGAHTCV-VCL 101

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            T C ++G  K+ E    ++  K      DG +S     C GAC  AP+V+ 
Sbjct: 102 GTACYVKGSNKVAEGLEQELGIKVGETTPDGKISLMAARCVGACGIAPVVVF 153


>gi|160947615|ref|ZP_02094782.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
 gi|158446749|gb|EDP23744.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
          Length = 161

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A++P+L  AQ   G++    ++++A  + +   +V  +ATFY+QF   P G +  V VC
Sbjct: 29  GALMPVLQEAQSIFGYLPEEIMDLIAKRMKIFPAKVFGVATFYSQFSFIPKG-KYQVSVC 87

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G ++++    ++I  +    + D   S  +  C G C  AP+V I +D Y  
Sbjct: 88  MGTACYVKGAQEILNEFCDRIGVEVGGTSEDLKFSVAQTRCIGECNLAPVVTINEDVYAH 147

Query: 160 LTPERLEEII 169
           +    +  I+
Sbjct: 148 IKKADIRRIM 157


>gi|119489275|ref|ZP_01622082.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
 gi|119454749|gb|EAW35894.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
          Length = 176

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G R +  +
Sbjct: 41  QDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RHNCVI 99

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  T C +RG +K++     +          DG +S     C GAC  AP+V+
Sbjct: 100 CMGTACYVRGGDKVLAAIEEQTGVHSGETTPDGLVSLVTARCVGACGIAPVVV 152


>gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
 gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
          Length = 714

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             ++ LL   Q+  G++ RAA+  +A  L+++   V  + ++Y   +  P G R  +Q+C
Sbjct: 36  GGLLELLHSLQDALGFIPRAAVPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 94

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158
               C  RG + L    +  +  +    ++DG+++ E V C G C  +P VM+ + + + 
Sbjct: 95  RAEACKSRGGDALFAHAQETLGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 154

Query: 159 DLTPERLEEIID 170
            +T +RL+ +++
Sbjct: 155 RMTADRLDALLE 166


>gi|298528248|ref|ZP_07015652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511900|gb|EFI35802.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 161

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R +  +IP L   Q + G++    ++ ++  L+++   +  +A+FY  F   P G +  V
Sbjct: 24  RKRGILIPALHEIQNKMGYLDPEELKELSKSLNISLTEIYSVASFYKMFHFKPRGKKI-V 82

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC  T C +RG + +++    +   K      D T++ E V C G C  AP+V   ++ 
Sbjct: 83  KVCFGTACYVRGAKVVLDSLSEEFDVKDGETTEDLTMTLETVGCVGCCGLAPVVTCNEEV 142

Query: 157 YEDLTPERLEEIIDA 171
             ++  ++L+  ID+
Sbjct: 143 VGEIDGKKLDAFIDS 157


>gi|218441076|ref|YP_002379405.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. PCC
           7424]
 gi|218173804|gb|ACK72537.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7424]
          Length = 166

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  +A  L +   RV  +ATFY  F L P G    V V
Sbjct: 34  QDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSRVYGVATFYHLFSLKPSGEHTCV-V 92

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C  T C ++G +K++     ++  K    + DG +S     C GAC  AP V+ 
Sbjct: 93  CLGTACYVKGGDKILSDLEKQLGIKVGETSPDGKVSLVSARCIGACGIAPAVVF 146


>gi|330815878|ref|YP_004359583.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
 gi|327368271|gb|AEA59627.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
          Length = 156

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S +  + ++SR+  +R   +++ +L   Q++ G+V    + ++A  L+++   V  + T+
Sbjct: 4   SPVSADALVSRH--ARADQSLVAILHAIQDEAGYVPEGCVPLLAKTLNLSRAEVHGVLTY 61

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+ +P   R  +Q+C    C   G E L+E  + +   + + + + G +  E V C 
Sbjct: 62  YHHFRTTPPA-RVTIQLCRAEACRSLGGEALVEHAQARTGCR-IDQGAQGDVELESVYCL 119

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C  +P  MI  + +  +T  R + ++ A
Sbjct: 120 GFCAQSPSAMINGEPHARMTAARFDALLTA 149


>gi|323484498|ref|ZP_08089864.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
           WAL-14163]
 gi|323692559|ref|ZP_08106792.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
 gi|323402276|gb|EGA94608.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
           WAL-14163]
 gi|323503425|gb|EGB19254.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
          Length = 164

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI-- 73
           F+ + E    +  VIS    +    A++P+L  AQE  G++    IEV   I D   I  
Sbjct: 10  FTCTAEQEADLKRVISELKDT--AGALMPILQHAQEIFGYLP---IEVQTMISDETGIPL 64

Query: 74  -RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            ++  +ATFY+QF L P G +  + VC  T C ++G   + +     +         DG 
Sbjct: 65  EKIYGVATFYSQFSLQPKG-QYRISVCLGTACYVKGSGDIFKKLEELLGITNGECTPDGK 123

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S +   C GAC  AP++MI  + Y  LT + +  I+  +
Sbjct: 124 FSLDSCRCVGACGLAPVMMINDEVYGRLTVDDVPTILAKY 163


>gi|298528320|ref|ZP_07015724.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511972|gb|EFI35874.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 173

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           AV  +L R Q+  G++    ++ +A  +++    V  +A+FY+ F L P G R  ++VC 
Sbjct: 42  AVTQVLRRCQDLVGYLPVELLDYIARGMNIPASEVFGVASFYSLFSLKPRG-RNIIRVCT 100

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G + ++   +   H        D   + E V C GAC  AP + I +  +  +
Sbjct: 101 GTACHVKGADLVMRRLKQTYHLDDGSTTPDRRFTLESVRCMGACGLAPAMTINQTAHGHI 160

Query: 161 TPERLEEIIDAF 172
           TP++  +++  +
Sbjct: 161 TPDQALKLLQEY 172


>gi|50083952|ref|YP_045462.1| NADH dehydrogenase subunit E [Acinetobacter sp. ADP1]
 gi|49529928|emb|CAG67640.1| NADH dehydrogenase I chain E [Acinetobacter sp. ADP1]
          Length = 170

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PVG 
Sbjct: 33  YPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQMLSISVADLEGVATFYNRIYRQPVG- 89

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C   P +MI
Sbjct: 90  RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPTLMI 149

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DT+  +    ++++++ +
Sbjct: 150 DEDTHGLVDVSSVKQLLEKY 169


>gi|189219242|ref|YP_001939883.1| NAD-dependent formate dehydrogenase gamma subunit
           [Methylacidiphilum infernorum V4]
 gi|189186100|gb|ACD83285.1| NAD-dependent formate dehydrogenase gamma subunit
           [Methylacidiphilum infernorum V4]
          Length = 159

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           + +IP   + QE+ G++ +  I  +A+  +++      + TFY  F+  P G +  +++C
Sbjct: 27  NGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILKIC 85

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   GC K+I   +  +        +DG L+     C G C N P V +    Y  
Sbjct: 86  RAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLYGR 145

Query: 160 LTPERLEEII 169
           +  +++E+++
Sbjct: 146 VNTQKMEKLL 155


>gi|322420256|ref|YP_004199479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320126643|gb|ADW14203.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 180

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 30  ISRYPP----SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           I  +PP     + +  +I  L +AQ+  G++       VAN   +    V  + TFY+ F
Sbjct: 25  IDSFPPVTEWRKKRGDLIASLHKAQQLFGYLPEEVQLFVANKFRLQLSDVAGVVTFYSFF 84

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            + P G R  V VC  T C ++G ++++    +++         D   S   + C GAC 
Sbjct: 85  VVRPPG-RYTVNVCTGTACFVKGADRVLREFEHELGIASGETRGDLEFSLGGLRCVGACS 143

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            AP+VM+    Y ++TP+ ++ I+
Sbjct: 144 LAPVVMVNDRVYGNVTPDMVKAIV 167


>gi|114566556|ref|YP_753710.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337491|gb|ABI68339.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++IS+Y        +I      Q +  ++   AI V A +  +   +   +ATFY+  ++
Sbjct: 6   DIISKY--QDLPGGIIEAYHALQREYSYIPEDAIRVAAEVFGIPTAKAWGVATFYSYLKV 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G    +++C + PC + G  ++I     ++  K      DG  + E  EC G C   
Sbjct: 64  GKRGKNV-IRICESAPCHVAGAAEVIAALEKELGIKMGETTPDGKFTLELCECVGQCQAT 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++ +    Y D+TPE++  ++  +
Sbjct: 123 PVITVNSKPYGDMTPEKVSGVLAEY 147


>gi|307153310|ref|YP_003888694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7822]
 gi|306983538|gb|ADN15419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7822]
          Length = 179

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  +A  L +   +V  +ATFY  F L P G    V V
Sbjct: 43  QDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSQVYGVATFYHLFSLKPSGEHTCV-V 101

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C  T C ++G +K++     ++  K    ++DG +S     C GAC  AP V+ 
Sbjct: 102 CLGTACYVKGGDKILSELEKQLGVKVGETSADGKVSLVSARCIGACGIAPAVVF 155


>gi|297569385|ref|YP_003690729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925300|gb|ADH86110.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 206

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             +I  L   Q   G++  AA+  +   L +   ++  + TFY  F L P G    V VC
Sbjct: 63  GGLIEALHAVQRAYGYIDEAAMRAIGAALQLPLSKIYGVVTFYHFFHLKPKGRHTCV-VC 121

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             T C ++G ++L++    +    P    +DG LS     C GAC  AP V+I
Sbjct: 122 LGTACYIKGADRLLQTISREQQVSPGETTADGRLSLLTARCVGACGQAPAVVI 174


>gi|161075749|gb|ABX56622.1| formate dehydrogenase gamma subunit [Methylacidiphilum infernorum
           V4]
          Length = 153

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           + +IP   + QE+ G++ +  I  +A+  +++      + TFY  F+  P G +  +++C
Sbjct: 21  NGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILKIC 79

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   GC K+I   +  +        +DG L+     C G C N P V +    Y  
Sbjct: 80  RAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLYGR 139

Query: 160 LTPERLEEII 169
           +  +++E+++
Sbjct: 140 VNTQKMEKLL 149


>gi|239905978|ref|YP_002952717.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
 gi|239795842|dbj|BAH74831.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
          Length = 166

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   G++   A+   A +L M  + +  +ATFY      PVG R  + V
Sbjct: 23  REAAVDVMYALQHHYGYLCDEAMHRAAEVLGMTTLELESLATFYDYLYRRPVG-RYVIHV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C +   + + +     +   P     DG  +     C G C NAP ++I    Y+
Sbjct: 82  CDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLPAACVGNCHNAPTMLINGRFYD 141

Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181
            LTPE ++ +I     G  + +R
Sbjct: 142 RLTPEAVDAVIAELRAGTEEPVR 164


>gi|320353703|ref|YP_004195042.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320122205|gb|ADW17751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 171

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+  ++    +  VA  LD+   RV  +ATFY+ F L P G +  +++C  
Sbjct: 34  LIPILQAVQEEYRYLPEDVLTFVAAGLDVPPARVYGVATFYSHFALEPKG-KYCIRLCDG 92

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C ++    ++E    ++        ++  L + E V C GAC  AP+V+I ++ +  +
Sbjct: 93  TACHVKRSIPILEAIYKRLGLSSKRTTTEDMLFTVETVACLGACGLAPVVVINEEVHGQM 152

Query: 161 TPERLEEIID 170
           TPE   ++I+
Sbjct: 153 TPEAAIQLIN 162


>gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   QE+ G +     + +A  L++    V  + +FY+ +   P G +  ++ C +
Sbjct: 37  LMPVLQAVQEEIGCLPPTVQDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCES 95

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
            PC ++G + L+E  + ++     H   DG  + E   C G C  AP + I +  + +LT
Sbjct: 96  PPCHIQGADNLLEFTQAELGVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLT 155

Query: 162 PERLEEIIDAFSTGQ 176
            +++ +I+  +  G+
Sbjct: 156 KDKIRQILADYRAGK 170


>gi|288941581|ref|YP_003443821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
           vinosum DSM 180]
 gi|288896953|gb|ADC62789.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
           vinosum DSM 180]
          Length = 164

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA  LD+   +V  +ATFY  F L P G R    VC 
Sbjct: 33  ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            T C ++G   LIE  +      P     D  LS     C GAC  AP V++
Sbjct: 92  GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVV 143


>gi|160942427|ref|ZP_02089734.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434679|gb|EDP12446.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
           BAA-613]
          Length = 162

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  +  +R + ++IP++   QE+  ++    +  VA  + +   +   +A+FY  F 
Sbjct: 11  DEIIEMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKEIGITEAKAYSVASFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWEEVECQGAC 144
               G +  +++C  T C +R    +++      K++ K  H   D   + E V C GAC
Sbjct: 69  FEEKG-KYIIKICDGTACHVRKSMPILDYLYKTLKLNAKK-HTTEDALFTVETVSCLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
             AP + + +  Y  ++PE+++++++    G+ D
Sbjct: 127 GLAPAITVNEKVYPKMSPEKMKKLLEEIKRGEPD 160


>gi|13474500|ref|NP_106069.1| formate dehydrogenase subunit gamma [Mesorhizobium loti MAFF303099]
 gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrogenase gamma subunit [Mesorhizobium
           loti MAFF303099]
          Length = 159

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 7/159 (4%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            QP+S   +  +A  + E+     P      ++P+L   Q++ G V +AA+ V+A+ L++
Sbjct: 3   MQPASTEIASRTAAIIQELKGLEGP------LLPILHEIQDEFGHVPQAALPVIADGLNL 56

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
           +   V  + TFY  F+  P G R  +++C    C   G + +    +  +         D
Sbjct: 57  SRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKIKQLLGIGFHETTRD 115

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           G+++ E V C G C  +P  M+  +    L  ++++EI+
Sbjct: 116 GSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIL 154


>gi|186470174|gb|ACC85637.1| HoxE [Lyngbya majuscula CCAP 1446/4]
          Length = 174

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G R +  +
Sbjct: 39  QDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RHNCVI 97

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  T C +RG +K++     +          DG +S     C GAC  AP+V+
Sbjct: 98  CLGTACYVRGGDKVLAALEEQTGIHSGETTPDGLVSLVTARCVGACGIAPVVV 150


>gi|212696953|ref|ZP_03305081.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676041|gb|EEB35648.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 167

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P+L + Q    ++    ++++A  L ++   +  +ATFY+QF L P G    + V
Sbjct: 26  KGAVMPVLQKCQNLFSYIPEPIVDLMALKLGVSSSEIYGVATFYSQFSLKPKGEH-EICV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTY 157
           C  T C ++G +K+++   +++  +      DG +S  E  C G C  AP+V I G    
Sbjct: 85  CLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLDI 144

Query: 158 EDLTPERLEEII 169
            +L+   + +II
Sbjct: 145 GNLSSADVHKII 156


>gi|215484516|ref|YP_002326751.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
           baumannii AB307-0294]
 gi|213985764|gb|ACJ56063.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
           baumannii AB307-0294]
          Length = 168

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 29  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 86

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 87  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 145

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 146 MIDEDTHGLVEVTSIKQLLEKY 167


>gi|298528243|ref|ZP_07015647.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511895|gb|EFI35797.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 153

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++VI  Y  +  +   + LL   +E  G+V    +  +++ L++   R   IATF++Q 
Sbjct: 5   LDKVIENYHEN--EGNALTLLQDLEENFGYVPEETVYELSDRLNIPPSRFFGIATFFSQL 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGAC 144
            L P G    + VC  TPC ++G EK++   R ++        S D   + EEV C GAC
Sbjct: 63  HLKPRGKNI-ITVCRGTPCHVKGSEKILSRMRMELDIPSGEETSEDRMFTVEEVNCVGAC 121

Query: 145 VNAPMVMIGK 154
             AP+V+I +
Sbjct: 122 GMAPVVVINQ 131


>gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum]
          Length = 160

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA  LD+   +V  +ATFY  F L P G R    VC 
Sbjct: 29  ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 87

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            T C ++G   LIE  +      P     D  LS     C GAC  AP V++
Sbjct: 88  GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVV 139


>gi|116515041|ref|YP_802670.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256895|gb|ABJ90577.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 156

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+A I  L   QE   W+ + +I  ++ IL +    V  IATFY      PVG R  ++ 
Sbjct: 23  QAACIEALKIVQEHRKWICKDSIIAISKILSIPACEVESIATFYCHIFRKPVG-RNIIRY 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C +   + + +  +  ++  P    SD   +     C GAC   P++++ K  Y 
Sbjct: 82  CDSVVCFINNFKSIKKKLKYILNISPGETTSDCRYTLLPTCCLGACDKGPVMLVNKTLYT 141

Query: 159 DLTPERLEEIIDAF 172
            LT + L  I+D +
Sbjct: 142 RLTSKMLINILDKY 155


>gi|323703082|ref|ZP_08114737.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531976|gb|EGB21860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 187

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +++V++ Y   R    +I +L  AQ   G++       +++ +D+    V  + 
Sbjct: 9   EEKFNRLDQVLAVY--GRDPEQLIRVLQEAQHIFGYLPEEVQAYISHKMDIPVSAVNGVV 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G + +V VC  T C ++G +K+ +  R+++  K      D   +     
Sbjct: 67  TFYALFSTEPKG-KYNVNVCLGTACYVQGAQKIYDTFRDQLGLKDSDTTEDMLFTVRSSR 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF----STGQGD----TIRPG 183
           C GAC  AP++ + +D +  LT   + E+I  +    + G+ D      RPG
Sbjct: 126 CLGACGLAPVITVNEDVHGKLTARDVAELIGRYKKKEAAGEKDEGQELTRPG 177


>gi|310778493|ref|YP_003966826.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747816|gb|ADO82478.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 159

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQ+  G++     E +   + +    +  + TFY+ F  +P G    + VC  
Sbjct: 29  LISVLHKAQDMFGYLPVEVQEFIGEKMGIPISEIYGVITFYSFFTTTPKGEHP-ISVCMG 87

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G E ++     ++  K     +DG  S + + C GAC  AP++ IG  TY  + 
Sbjct: 88  TACYVNGSETILNELTRELGVKVGETTNDGKFSIDVLRCIGACGMAPIIKIGNKTYGRVE 147

Query: 162 PERLEEIIDAF 172
            E+++ I+  +
Sbjct: 148 AEQVKHILKEY 158


>gi|169797055|ref|YP_001714848.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AYE]
 gi|184157032|ref|YP_001845371.1| NADH dehydrogenase subunit E [Acinetobacter baumannii ACICU]
 gi|213156539|ref|YP_002318200.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
 gi|239501291|ref|ZP_04660601.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB900]
 gi|260555653|ref|ZP_05827873.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347791|ref|ZP_07228532.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB056]
 gi|301510626|ref|ZP_07235863.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB058]
 gi|301595911|ref|ZP_07240919.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB059]
 gi|332852144|ref|ZP_08433971.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
 gi|332867543|ref|ZP_08437696.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
 gi|332872607|ref|ZP_08440575.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
 gi|169149982|emb|CAM87876.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AYE]
 gi|183208626|gb|ACC56024.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Acinetobacter
           baumannii ACICU]
 gi|193076537|gb|ABO11195.2| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
 gi|213055699|gb|ACJ40601.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
 gi|260410564|gb|EEX03862.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506931|gb|ADX02385.1| nuoE [Acinetobacter baumannii 1656-2]
 gi|323516798|gb|ADX91179.1| NADH dehydrogenase subunit E [Acinetobacter baumannii TCDC-AB0715]
 gi|332729516|gb|EGJ60855.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
 gi|332733960|gb|EGJ65105.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
 gi|332739136|gb|EGJ69995.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
          Length = 169

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|325845920|ref|ZP_08169118.1| putative bidirectional hydrogenase complex protein HoxE
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481826|gb|EGC84858.1| putative bidirectional hydrogenase complex protein HoxE
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 167

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P+L + Q    ++    ++++A  L ++   +  +ATFY+QF L P G    + V
Sbjct: 26  KGAVMPVLQKCQNLFSYIPEPIVDLMALNLGVSSSEIYGVATFYSQFSLKPKGEH-EICV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTY 157
           C  T C ++G +K+++   +++  +      DG +S  E  C G C  AP+V I G    
Sbjct: 85  CLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEARCIGQCGIAPVVSIDGNLDI 144

Query: 158 EDLTPERLEEII 169
            +L+   + +II
Sbjct: 145 GNLSSADVHKII 156


>gi|163853800|ref|YP_001641843.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           extorquens PA1]
 gi|218532744|ref|YP_002423560.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240141252|ref|YP_002965732.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens AM1]
 gi|254563761|ref|YP_003070856.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit
           gamma [Methylobacterium extorquens DM4]
 gi|28207553|gb|AAO32144.1| NAD-linked formate dehydrogenase gamma subunit [Methylobacterium
           extorquens AM1]
 gi|163665405|gb|ABY32772.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           extorquens PA1]
 gi|218525047|gb|ACK85632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240011229|gb|ACS42455.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens AM1]
 gi|254271039|emb|CAX27046.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens DM4]
          Length = 157

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+L   QE  G+V   A+ ++A+ L+++   V    TFY  F+  P   R HV++
Sbjct: 23  EGATLPILHALQEAFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L     +++       ++DG ++ E V C G C NAP  ++  +   
Sbjct: 83  CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANAPAALVDDEPLA 141

Query: 159 DLTPERLEEII 169
            L+ E L+  +
Sbjct: 142 RLSAESLDAAL 152


>gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
 gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
          Length = 717

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            ++I LL   Q   G++ RAA+  +A  L+++   V  + ++Y   +  P G R  +Q+C
Sbjct: 43  GSLIELLHSLQNALGFIPRAAVPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQIC 101

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158
               C  RG + L    +  +  +    ++DG+++ E V C G C  +P VM+ + + + 
Sbjct: 102 RAEACKSRGGDALFAHAQAAMGCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHA 161

Query: 159 DLTPERLEEII 169
            +T +RL+ ++
Sbjct: 162 RMTEDRLDALL 172


>gi|295112091|emb|CBL28841.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Synergistetes
           bacterium SGP1]
          Length = 163

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           +++     + +++ R+     Q+ +IP++   Q    ++ R A+E++A+ L ++  +V  
Sbjct: 3   YTDVDVSRIRDILLRHTAD--QTNLIPIMQGVQALYNYLPRPALEMIADYLHVSISKVYG 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWE 136
           +ATFY  F L+  G    ++ C  T C +R    ++   R ++        +D  L + E
Sbjct: 61  VATFYENFSLNAKGKHI-IRCCDGTACHVRKGATILGAIRKELGLTAAQSTTDDMLFTVE 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            V C GAC   P+V++  + +  +T ++  E++++ 
Sbjct: 120 IVSCLGACGLGPVVVVDDEVHPTMTVDKARELLESI 155


>gi|209525023|ref|ZP_03273567.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
           CS-328]
 gi|209494432|gb|EDZ94743.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
           CS-328]
          Length = 178

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G    V V
Sbjct: 41  QDALIEVLHKAQEAFGYLEEDVLIYVARQLKLPLSQVYGVATFYHLFSLKPSGAHTCV-V 99

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G  +++     K   K      DG +S     C GAC  AP  +       
Sbjct: 100 CLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDGKVAG 159

Query: 159 DLTPE----RLEE 167
             TPE    RLE+
Sbjct: 160 QQTPEMAVARLEQ 172


>gi|57234358|ref|YP_181589.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
           195]
 gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
           195]
          Length = 161

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L++ Q++  W+ + A+  V+  L++   RV  +ATFY  F + P G + +V VC  
Sbjct: 31  LIQVLLKIQKEYNWLPKEALYKVSQALNVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G  K+++     +  K      D   S E V C G C   P+V++    +  L 
Sbjct: 90  TACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149

Query: 162 PERLEEII 169
               E+I+
Sbjct: 150 TADAEKIL 157


>gi|320161183|ref|YP_004174407.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
 gi|319995036|dbj|BAJ63807.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
          Length = 159

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            + +  +IP+L     Q G++    +E VA +L +   +V  +ATFY    +  +G R  
Sbjct: 23  GKTREELIPILQEINRQYGFIPSQGLEEVARLLQIPKSQVFSVATFYHMLNVKEMG-RHI 81

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           +  C + PC + G  ++    + ++         D   S   V C G C   P+++I +D
Sbjct: 82  ILFCESAPCHVVGGREVWRRLKQELKIDAGETTPDKKWSLVTVSCLGVCGVGPVIVIDED 141

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y ++TPE + +I+  ++
Sbjct: 142 MYGNVTPEMIPDILARYN 159


>gi|116624104|ref|YP_826260.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227266|gb|ABJ85975.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 170

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   QE  G++  A +  VA++L +   RV   ATFY  F L P G R    VC 
Sbjct: 33  ALIETLHTVQECFGYLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKG-RHTCVVCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   L+     +   KP    +DG LS     C G+C  AP  ++ +     +
Sbjct: 92  GTACYIKGAPALLGAIEKQYGIKPGETTADGELSVLTARCLGSCGLAPAAVMDQAVLGKI 151

Query: 161 TPERL 165
            P  +
Sbjct: 152 GPAEM 156


>gi|260551030|ref|ZP_05825235.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|260405978|gb|EEW99465.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
           RUH2624]
          Length = 169

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSVKQLLEKY 168


>gi|189425851|ref|YP_001953028.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189422110|gb|ACD96508.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 171

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L  AQE  G++SR  +  VA  L +   +V  +ATFY  F L P G  + + VC 
Sbjct: 33  ALIEVLHTAQEAFGYLSRELLAHVAARLKLPESQVFGVATFYHFFTLRPKGEHSCI-VCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G  +++         K     +DG LS     C G C  APM+M+    +   
Sbjct: 92  GTACYVKGAGEILGRLEQAAGIKAGQTTADGRLSLGTARCLGNCSLAPMMMLDDTVHGPE 151

Query: 161 TPE 163
           +P+
Sbjct: 152 SPD 154


>gi|118475092|ref|YP_891365.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414318|gb|ABK82738.1| hydrogenosomal NADH dehydrogenase 24 kda subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 163

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F F+ E    +NE+  +    R  + V+P L   Q  +G++    +  +   L +  +  
Sbjct: 3   FEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGFIDAKDVLYLEKTLGIRSMFY 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E   FY+ F     G +  ++ C T  C LRG ++LI+  ++ +  K    +SDG  S 
Sbjct: 61  AEAIGFYSMFNQKSKG-KFELKFCKTITCKLRGSDELIKFTQDILGIKMGETSSDGLFSL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            E EC G C  AP ++   +  + L    +  +I+
Sbjct: 120 GETECLGYCEKAPCMLCNLEQIDSLDENSITNLIE 154


>gi|154247409|ref|YP_001418367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
           autotrophicus Py2]
 gi|154161494|gb|ABS68710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
           autotrophicus Py2]
          Length = 176

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+L   QE  G+V   A+ ++A  L+++   V  + TFY  F+    G R  V++
Sbjct: 35  EGATMPILHALQETFGFVPDPAVPMIAESLNLSRAEVYGVLTFYHDFRREAPG-RHVVKL 93

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L +    K+       + DG ++ E + C G C  AP  ++      
Sbjct: 94  CAAEACQSVGGKALAQYVEEKLGVDMGSTSPDGRVTLEPIYCLGLCACAPSALVDGQLVG 153

Query: 159 DLTPERLEEIIDAFSTGQ 176
            L  + ++EI D F+ G+
Sbjct: 154 RLDRDAIDEIADCFANGK 171


>gi|160902192|ref|YP_001567773.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
 gi|160359836|gb|ABX31450.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 169

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 1/141 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +I +L + QE  G++     ++VA  L +   +V  + TFY  F   P G +  + V
Sbjct: 30  RSLLIEVLHKVQENLGYIPNEVQKLVAKKLKIPSSQVYGVVTFYNFFSTKPKG-KYPISV 88

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G  ++++  +  ++ +      DG  S   V C GAC  AP+V IG+  Y 
Sbjct: 89  CLGTACYVGGANEILDEFKKILNVEEEEVTEDGLFSIHPVRCLGACGLAPVVKIGEKVYG 148

Query: 159 DLTPERLEEIIDAFSTGQGDT 179
            L    +  II  +   + ++
Sbjct: 149 RLKINDVRRIIRDYRAKEKNS 169


>gi|320102224|ref|YP_004177815.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
 gi|319749506|gb|ADV61266.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
          Length = 183

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++  YP    Q+  +P L    E    V R A+  +A +LD+   +V +  +FY  F
Sbjct: 30  ITALLPNYPSK--QAVTLPALHLVHETFRCVPRQAMVEIAELLDLTPAQVHDTMSFYGFF 87

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             +P+G    V +C +  C  RG ++L+     K+   P    SDG L+ E  EC G C 
Sbjct: 88  HQAPIGD-VRVWICRSISCAARGGDELLTKTCAKLGIHPGETTSDGKLTVEYAECLGICD 146

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           +AP  +   D      P   E  ++A      D +R GP
Sbjct: 147 HAPAAL--ADDGRIFGPLEDESSLEAML----DAVRQGP 179


>gi|152996298|ref|YP_001341133.1| formate dehydrogenase subunit gamma [Marinomonas sp. MWYL1]
 gi|150837222|gb|ABR71198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Marinomonas sp.
           MWYL1]
          Length = 165

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++PLL   Q++  ++   A+ ++A  L ++   V  + +FY  F+    G R  V+VC 
Sbjct: 27  ALLPLLHAIQDRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFRTKQPG-RHVVEVCR 85

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G   L    ++ +  +     +D  ++ E V C G C   P V +G + Y ++
Sbjct: 86  AEACQAVGARHLEAYAKSILDVQYHQTTADNNITLEPVYCLGNCSCGPSVRVGDEIYAEV 145

Query: 161 TPERLEEIIDAFST 174
             +R +E+I++  T
Sbjct: 146 DTQRFDELIESLKT 159


>gi|220931144|ref|YP_002508052.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
 gi|219992454|gb|ACL69057.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
          Length = 136

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L   QE  G++S   I  ++    M   R+  +  FY+ F   PVG +  V+VC +  C 
Sbjct: 10  LHNIQETYGFISEGEIRKLSQEYKMPRARIYGVIRFYSMFYTEPVG-KYIVRVCDSLSCH 68

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           +   E ++EV ++ +  K      D   + E VEC G C   P++M+    Y  ++P   
Sbjct: 69  INDSEGIVEVVKDYLGIKNGETTEDKKFTLEVVECLGHCGEGPVMMVNDRIYTRVSPNMA 128

Query: 166 EEII 169
            EI+
Sbjct: 129 LEIL 132


>gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 570

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           +++ V+ +Y   R +SA++P+L   QE+ G+VS  A++ VA++L +   +V  +ATFY  
Sbjct: 12  FISTVVGKY--DRQRSALLPILRVIQEEYGYVSELAMQYVADLLGIHAAKVYGVATFYHF 69

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
               P G +  +++      +++G   +       +  +      DG  + +   C G  
Sbjct: 70  INTEPKG-KFIIRLSRDISSIMKGANDIARQLETVLGIRFGETTPDGLFTLQWTSCIGMD 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP +MI  + + +LTP  + +II
Sbjct: 129 DQAPAMMINSEVFSNLTPLLIPQII 153


>gi|253698813|ref|YP_003020002.1| NADH dehydrogenase subunit E [Geobacter sp. M21]
 gi|251773663|gb|ACT16244.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 155

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 26  VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++E + +    R   A+ P      ++   Q   GW++  A+   A +L ++ ++V E+A
Sbjct: 2   ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAAALLGLSPLQVEELA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY      PVG +  + VC +  C    C+ +IE  + ++  +     +DG  +     
Sbjct: 62  TFYEMIYRRPVGKKV-IHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           C G C ++P + +G   Y  LTP  ++EI++
Sbjct: 121 CMGRCGDSPAMSVGDTPYGHLTPHLVDEILE 151


>gi|307822804|ref|ZP_07653035.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307736408|gb|EFO07254.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 159

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 5/145 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +N  +S Y      S  I  L   Q+   WVS   +  VA +LD++  ++  +ATFY   
Sbjct: 17  INAEMSHYENKTAVS--IEALKIVQKHRRWVSDQCLIAVAELLDISPAQLEGVATFYNLI 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIE-VCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
              PVG +  +  C +  C + G +++ E +CR+ ++ +    ++DG  +   + C GAC
Sbjct: 75  YRQPVG-KTVIHYCNSVTCWMLGSDQVGESLCRH-LNVELGEMSADGEYTVLPIVCLGAC 132

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
            +AP+VM+G +   D+T + + EI+
Sbjct: 133 DHAPVVMVGNELKFDITEDAVNEIL 157


>gi|284050503|ref|ZP_06380713.1| bidirectional hydrogenase complex protein HoxE [Arthrospira
           platensis str. Paraca]
 gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FACHB341]
 gi|291570292|dbj|BAI92564.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 179

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G    V V
Sbjct: 41  QDALIEVLHKAQEAFGYLEEDVLIYVARQLQLPLSQVYGVATFYHLFSLKPSGAHTCV-V 99

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G  +++     K   K      DG +S     C GAC  AP  +       
Sbjct: 100 CLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDGKVAG 159

Query: 159 DLTPE 163
             TPE
Sbjct: 160 QQTPE 164


>gi|225405645|ref|ZP_03760834.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
           DSM 15981]
 gi|225042839|gb|EEG53085.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
           DSM 15981]
          Length = 164

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            +++P++ +AQ+  G++      ++++ + +   +V  ++TFY QF L P G +  + VC
Sbjct: 32  GSLMPVMQKAQDIYGYLPIEVQTMISDEMGIPLEKVYGVSTFYAQFALQPKG-KYKISVC 90

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++       +        +DG  S +   C GAC  AP++MI  + Y  
Sbjct: 91  LGTACYVKGSGEIFSKLEELLGITNGECTADGKFSLDSCRCVGACGLAPVMMINGEVYGR 150

Query: 160 LTPERLEEIIDAFS 173
           LT + +  I+  ++
Sbjct: 151 LTVDDVPGILAKYN 164


>gi|302037259|ref|YP_003797581.1| formate dehydrogenase subunit gamma [Candidatus Nitrospira
           defluvii]
 gi|300605323|emb|CBK41656.1| Formate dehydrogenase, gamma subunit [Candidatus Nitrospira
           defluvii]
          Length = 149

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S ++  L+  QEQ G V   A+  +A+ L +   +V  + ++Y   +L+  G R  ++VC
Sbjct: 17  SNILKALLALQEQLGHVPTEAVPDIAHALGVTTAQVAGVLSYYPDLRLTAPG-RHLIRVC 75

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   GC +L+   ++++        + G  + + + C G C  +P VMI +D +  
Sbjct: 76  MGESCYANGCGRLLRELQDRLRVDVGETAAGGKFTLDTMSCAGNCAVSPTVMIDRDLHGR 135

Query: 160 LTPERLEEIIDAF 172
           L P +L+ +++ +
Sbjct: 136 LLPSQLDTLLERY 148


>gi|332285352|ref|YP_004417263.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
 gi|330429305|gb|AEC20639.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
          Length = 168

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q   G +   A+ V+A  L  +   +  + +FY  F+  P G    ++VC  
Sbjct: 35  LLPILHAIQHALGCIPALAVPVLAKALQRSRAEIQGVISFYPHFREKPAGA-VMLEVCRA 93

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G   L E  R ++        ++G ++ + V C G C  +P VMI    +  +T
Sbjct: 94  ESCQAMGGNALAEHARQQLGCNFDDTTANGAVTLQAVYCLGLCAQSPAVMINGQPHARMT 153

Query: 162 PERLEEIIDA 171
           PE+L+ ++ A
Sbjct: 154 PEKLDRLLQA 163


>gi|164688082|ref|ZP_02212110.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
           16795]
 gi|164602495|gb|EDQ95960.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
           16795]
          Length = 166

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +SA+I +L  AQ   G++ +     +A+ L ++  +V  + +FY+ F  +P+G    + V
Sbjct: 27  ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIG-EYKISV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++     ++  K      D   + E + C GAC  AP+V++    Y 
Sbjct: 86  CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145

Query: 159 DLTPERLEEIIDAF 172
             T + + +I+D +
Sbjct: 146 QATTDDVSKILDNY 159


>gi|223984600|ref|ZP_03634727.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
           12042]
 gi|223963447|gb|EEF67832.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
           12042]
          Length = 164

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMR-AQEQEGWVSRAAIEVVANILDMAYIRVL 76
            +E+S   ++ ++ R+   R +   + L++   Q++ G++   A+E +A    ++   V 
Sbjct: 4   LNEQSVQVIDRIVDRH---RGRPGPVKLMLHDVQKELGYIPFEAMEKIAAASGVSAAEVY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFYTQF   P G    + VC  T C ++G   L++   +    K    ++DG  S +
Sbjct: 61  GVVTFYTQFTTEPKGKHV-INVCMGTACYVKGSADLLQRICDLTGTKVNQTSADGLFSLD 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTP-----ERLEEII 169
              C GAC  AP+ ++    Y + T      +R++ II
Sbjct: 120 ATRCLGACGLAPVAILDDQVYGNATSSTALEDRIKAII 157


>gi|270308167|ref|YP_003330225.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
           [Dehalococcoides sp. VS]
 gi|270154059|gb|ACZ61897.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
           [Dehalococcoides sp. VS]
          Length = 161

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L++ Q++  W+ + A+  V+  L++   RV  +ATFY  F + P G    V VC  
Sbjct: 31  LIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKGKHT-VSVCVG 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C + G  K+++     +  K      D   S E V C G C   P+V++    +  L 
Sbjct: 90  TACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCLGCCALGPVVVVDGHYHGKLP 149

Query: 162 PERLEEIIDAF 172
               E+I+  +
Sbjct: 150 TADAEKILADY 160


>gi|300114496|ref|YP_003761071.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
           C-113]
 gi|299540433|gb|ADJ28750.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
           C-113]
          Length = 154

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           S YP +  Q+  I  +   Q   GW+S  ++  +A+ L ++   +   ATFY      PV
Sbjct: 15  SHYPTA--QAVGIEAMKIVQHHRGWISDESLREIADHLGLSVESLDGAATFYNLIFRRPV 72

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + +C +  C + G E+L E  + ++         DG  +     C GAC  AP++
Sbjct: 73  GKHV-ILICDSVSCWIMGYEQLREQLQKELKIGLGETTQDGRFTLLPSCCLGACERAPVM 131

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           ++ +D + DL  E++ EI+  +
Sbjct: 132 IVDEDLHGDLDSEKIGEILADY 153


>gi|153812807|ref|ZP_01965475.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
 gi|149831167|gb|EDM86256.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
          Length = 159

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y P    +++IP++   Q +  ++    +  VA+ + +   +   +ATFY  F 
Sbjct: 11  DEIIEHYGPK--PASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G    ++VC  T C +R    + E    ++      H   D   + E V C GAC 
Sbjct: 69  FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            AP + +  + +  +TPE+    ID  +  +G+T+
Sbjct: 128 LAPTLTVNDEVHPKMTPEK---AIDLLNELRGETV 159


>gi|78222327|ref|YP_384074.1| bidirectional hydrogenase complex protein HoxE [Geobacter
           metallireducens GS-15]
 gi|78193582|gb|ABB31349.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Geobacter metallireducens GS-15]
          Length = 205

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L  AQE  G++S   +  VA  L + + +V  +ATFY  F L P G    V VC 
Sbjct: 51  ALIEVLHVAQEAFGYLSDELMAHVARQLKIPFSQVYGVATFYHFFSLEPRGAHTCV-VCT 109

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++   +++     +   K      DG L+   + C G+C  AP++++  +T    
Sbjct: 110 GTACYVKRSAEILVRLEQEFRVKAGKTTEDGGLTLSTIRCLGSCGQAPVMVLDGETVGQC 169

Query: 161 TPE 163
           TP+
Sbjct: 170 TPD 172


>gi|134299510|ref|YP_001113006.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052210|gb|ABO50181.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
          Length = 158

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           + +I ++   QE +G++ +  +   A  L +    V  +ATFY  F L P G R  V +C
Sbjct: 26  NGLIVVMAAIQESQGYLPKDLLVRTAEELGVPLSDVYGVATFYAAFSLRPRG-RHSVNLC 84

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++  +   ++  K  +   D   S + V C GAC  AP++ +  + Y  
Sbjct: 85  LGTACYVKGAPEVQSMLEKEMGIKAGNTTEDRRFSLDLVRCLGACGIAPVLTVNGEVYPR 144

Query: 160 LTPERLEEIIDAF 172
           +T E++ E++  +
Sbjct: 145 MTAEKVTEVLSKY 157


>gi|218782890|ref|YP_002434208.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764274|gb|ACL06740.1| 2Fe-2S family protein similar to NADH:ubiquinone oxidoreductase
           (NuoE) [Desulfatibacillum alkenivorans AK-01]
          Length = 156

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 45  LLMRAQEQE---GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           LLM  Q+      +V    I V+   L ++   +  +ATFY    L P G +  + VC  
Sbjct: 25  LLMIMQDISDIYNYVPPEVIPVLVEKLGVSESLIYSVATFYKTISLEPRG-KYIINVCTG 83

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG EK+      ++  +     +DG  + + V C GAC + P+ M+  DT+  L 
Sbjct: 84  TACHVRGAEKITNALAEELGIEEGQTTADGMFTLDAVRCVGACASGPVAMVNHDTHGALN 143

Query: 162 PERLEEIIDAF 172
                E++D +
Sbjct: 144 RSSALEMLDQY 154


>gi|291546306|emb|CBL19414.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
           SR1/5]
          Length = 159

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  +++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIEHY--GRKAASLIPIMQDIQAEYRYLPGELLTYVAEQIGVKEAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
             P G +  ++VC  T C +R    + E    ++   H+K  H   D   + E V C GA
Sbjct: 69  FEPKG-KYIIKVCDGTACHVRKSMPVKEAMLKELGLSHKK--HTTDDMMFTVETVSCLGA 125

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170
           C  AP + +  + +  +TPE+  E+++
Sbjct: 126 CGLAPTLTVNDEVHPKMTPEKAVELLN 152


>gi|77164633|ref|YP_343158.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254433276|ref|ZP_05046784.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|76882947|gb|ABA57628.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
 gi|207089609|gb|EDZ66880.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
          Length = 154

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           + YP +  Q+  I  +   Q   GWVS  ++  +A  L ++   +   ATFY      PV
Sbjct: 15  AHYPTA--QAVGIEAMKIVQHHRGWVSDESLREIAEYLGLSVESLDGAATFYNLIFRRPV 72

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + +C +  C + G E+L E  + ++         DG  +     C GAC  AP++
Sbjct: 73  GKHV-ILICDSVSCWIMGYEQLREQLQTELKIGLGETTQDGRFTLLPSCCLGACERAPVM 131

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           ++ +D + DL  E++ EI+  +
Sbjct: 132 VVDQDLHGDLDSEKIGEILAGY 153


>gi|170727207|ref|YP_001761233.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
           ATCC 51908]
 gi|169812554|gb|ACA87138.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
           ATCC 51908]
          Length = 179

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +  S S +    ++E+IS  P  +     I  L   Q + GWVS A++  ++    +   
Sbjct: 17  AEISLSSKEQQGIDELISHSP--QLAGITIDALKLIQAERGWVSDASLHALSLYTQIPVA 74

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            +  +ATFY      PVG +  +  C    C L G E + +  + +++       +D   
Sbjct: 75  DLDSVATFYNLIFRQPVG-KVVLHPCDGISCDLMGGEHIRQCLKQQLNITAGETTTDNRF 133

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +   + C GAC  AP+++  K  +E++T + L +++   ST
Sbjct: 134 TLIPLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTLST 174


>gi|53804299|ref|YP_113851.1| formate dehydrogenase subunit gamma [Methylococcus capsulatus str.
           Bath]
 gi|53758060|gb|AAU92351.1| formate dehydrogenase, gamma subunit [Methylococcus capsulatus str.
           Bath]
          Length = 159

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G++   A+  +A  L+++   V  + +FY  F+ +  G    + +C 
Sbjct: 24  ALLPILHGIQDRIGFIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPGKHT-IHLCR 82

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C     E L    + ++        +DG  S E V C G C  +P +MI  + Y  +
Sbjct: 83  AESCQAMNSESLETHVKARLGIDYHETTADGAFSLEPVYCLGNCACSPSMMIDHEVYGHV 142

Query: 161 TPERLEEIID 170
           +P+  + IID
Sbjct: 143 SPQSFDAIID 152


>gi|251779355|ref|ZP_04822275.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083670|gb|EES49560.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 163

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++  +ATFY  F L P G    +++
Sbjct: 22  KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +RG   ++E  R  +        +D  + + E V C GAC  AP+  +    Y
Sbjct: 81  CNGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140

Query: 158 EDLTPERLEEII 169
             +T ++  +II
Sbjct: 141 PSMTQQKARDII 152


>gi|262275221|ref|ZP_06053031.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
           hollisae CIP 101886]
 gi|262220466|gb|EEY71781.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
           hollisae CIP 101886]
          Length = 171

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q    +V  AA+ ++A  L+++   V  + +FY +F+  P G+   +Q+C 
Sbjct: 31  ALLPILHEIQHHLSYVPPAAVPMIARGLNLSNADVHGVISFYHEFRNQPPGSHV-IQICR 89

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G + L     +++         D   + E V C G C+ +P V +G D + D+
Sbjct: 90  AESCQSMGSQTLERHAFSRLGIGFHETTKDKNFTLEPVYCLGNCMYSPCVRVGDDIHGDM 149

Query: 161 TPERLEEIIDAFST 174
             +  + ++++  T
Sbjct: 150 NDDAFDSLVNSLIT 163


>gi|188584098|ref|YP_001927543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           populi BJ001]
 gi|179347596|gb|ACB83008.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           populi BJ001]
          Length = 157

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+L   QE  G+V   A+ ++A+ L+++   V    TFY  F+  P   R HV++
Sbjct: 23  EGATLPILHALQETFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L     +++       ++DG ++ E V C G C N P  ++  +   
Sbjct: 83  CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANGPAALVDDEPLA 141

Query: 159 DLTPERLEEII 169
            L+ E L+  +
Sbjct: 142 RLSAESLDAAL 152


>gi|330720273|gb|EGG98632.1| NAD-dependent formate dehydrogenase gamma subunit [gamma
           proteobacterium IMCC2047]
          Length = 164

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 21  ESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           E A W    V+E+I  +       A++P+L   Q+ +G++ + A+ ++A  L+     V 
Sbjct: 3   EQAQWDRQRVSEII--HSTKSMAGALLPMLHAIQDSQGYIPKDAVPMIAESLNQTRAEVH 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY  F+ +P   R  +++C    C  RG  +L    + K+        +    S +
Sbjct: 61  GVISFYHHFRQTP-PARKRIEICRAEACQARGSRELEAYAKEKLGISYHGMTASRDFSLD 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            V C G C   P V IG +    +   R +E++D
Sbjct: 120 PVYCLGNCACGPSVRIGDEVVGRVDKTRFDELVD 153


>gi|84686200|ref|ZP_01014095.1| ATP synthase subunit E [Maritimibacter alkaliphilus HTCC2654]
 gi|84665727|gb|EAQ12202.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2654]
          Length = 160

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + EVI  Y  +  +  ++P+L    E    V   A++ +A+ L++    V  + +FY  F
Sbjct: 15  IQEVIEAY--THLEGPLLPILHAMMEAFDHVPEDAVQPIADALNIGRAEVHGVISFYHDF 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G R  V++C    C   G   L +    ++         +G ++ E V C G C 
Sbjct: 73  RTLPAG-RHIVKICRAEACQALGANGLADAVLTRLGTSWHGTTPNGAVTIEPVYCLGLCA 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
           N P  MIG      L   +LE +I
Sbjct: 132 NGPAAMIGDKVVGALDEAKLERVI 155


>gi|317133526|ref|YP_004092840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
           harbinense YUAN-3]
 gi|315471505|gb|ADU28109.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
           harbinense YUAN-3]
          Length = 160

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E++   V+ ++ R+  S   SA+I +L   QE+  ++   A+  V+    ++   +  +A
Sbjct: 4   EQTIAAVDAIVDRHDAS--PSALIAILEEIQEECHYLPGDALARVSERTGVSESEIFSVA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWE 136
           TFY  F L+  G    ++VC  T C +R    ++   R+K+     KP     D   + E
Sbjct: 62  TFYKNFSLTAKGKYV-IKVCDGTACHVRKSIPILNALRDKLGVSEAKP--TTDDQLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            V C GAC  AP++ +    +  +TPE    ++D  
Sbjct: 119 TVSCLGACGLAPVMTVNDHVHPKMTPETALAVVDGL 154


>gi|289548716|ref|YP_003473704.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
           14484]
 gi|289182333|gb|ADC89577.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
           14484]
          Length = 154

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS-PV 90
           +Y P R + A++  L   Q+  G +   A+E VA IL +    V  +  FY  F    P 
Sbjct: 15  QYFPRR-EQAILLCLHEVQDYYGHIPNFALEEVAKILHVPLNHVESVVAFYDMFDRGEPA 73

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
             R  ++VC +  C     ++L+   +  +         DG      V+C GAC  AP+ 
Sbjct: 74  KHR--IRVCVSVVCHFMKKDQLLNALKKHLGIDFWQVTKDGRFKLIPVQCLGACSCAPVF 131

Query: 151 MIGKDTYEDLTPERLEEIIDAFS 173
           MI +DTY+    E+L EI+  ++
Sbjct: 132 MIDEDTYQFEGEEKLHEILSRYT 154


>gi|187934365|ref|YP_001886498.1| Fe-hydrogenase gamma subunit [Clostridium botulinum B str. Eklund
           17B]
 gi|187722518|gb|ACD23739.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B
           str. Eklund 17B]
          Length = 163

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++  +ATFY  F L P G    +++
Sbjct: 22  KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +RG   ++E  R  +        +D  + + E V C GAC  AP+  +    Y
Sbjct: 81  CDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140

Query: 158 EDLTPERLEEII 169
             +T ++  +II
Sbjct: 141 PSMTQQKARDII 152


>gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
           WH 5701]
 gi|87282303|gb|EAQ74263.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
           WH 5701]
          Length = 168

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L  AQ+   ++S   +  VA  L +   RV   A+FY  F+  P   R    VC 
Sbjct: 36  ALIEVLHGAQKLYSYLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQPP-ARHRCVVCT 94

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   LI      +  K   R  DG  S  EV C G C +AP+V+I        
Sbjct: 95  GTACQIQGAPALIAAMEEGLGLKLGARRGDGWASLSEVRCLGTCSDAPLVLIDGTVGRQQ 154

Query: 161 TPERL 165
           TP  L
Sbjct: 155 TPAGL 159


>gi|167746891|ref|ZP_02419018.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
 gi|167653851|gb|EDR97980.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
          Length = 157

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+A+IP++   Q +  ++    +  VA+ L +   +   +ATFY  F   P G +  ++V
Sbjct: 21  QAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYSVATFYENFSFEPKG-KYIIKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    ++E   +++        +D  + + E V C GAC  AP++ +    Y
Sbjct: 80  CNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLETVSCLGACGLAPVITVNDKVY 139

Query: 158 EDLTPERLEEII 169
             +TP+   E+I
Sbjct: 140 PAMTPDAAAELI 151


>gi|188588389|ref|YP_001921433.1| Fe-hydrogenase gamma subunit [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498670|gb|ACD51806.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E3
           str. Alaska E43]
          Length = 163

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++  +ATFY  F L P G    +++
Sbjct: 22  KSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKIYGVATFYENFSLQPKGKYV-IKI 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +RG   ++E  R  +        +D  + + E V C GAC  AP+  +    Y
Sbjct: 81  CDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFTVETVSCLGACGLAPVCTVNDVVY 140

Query: 158 EDLTPERLEEII 169
             +T ++  +II
Sbjct: 141 PSMTQQKARDII 152


>gi|319779886|ref|YP_004139362.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317165774|gb|ADV09312.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 159

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            QP+S   +  +A  + E+     P      ++P+L   QE+ G V + A+ V+A  L++
Sbjct: 3   MQPASTEITSRTAAIIQEMKGLEGP------LLPILHGIQEEFGHVPKDALPVIAEALNI 56

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
           +   V  + +FY  ++  P G R  +++C    C   G + +    +  +         D
Sbjct: 57  SRAEVHGVVSFYHDYRSHPAG-RHVLKLCQAESCQSMGSDAIAAKLKQLLGIGFHETTRD 115

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           G+++ E V C G C  +P  M+  +    L  E+L+EI+
Sbjct: 116 GSVTLEPVYCLGLCACSPAAMLDGEVIGRLDDEKLDEIV 154


>gi|164686660|ref|ZP_02210688.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
           16795]
 gi|164604050|gb|EDQ97515.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
           16795]
          Length = 191

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S++IP++   Q +  ++    +  +A+ L +   +   +ATFY  F   P G    ++VC
Sbjct: 53  SSLIPVMQDVQAEYRYLPGELLSYIADKLGIPLAKAYSVATFYENFSFDPKGKYV-IKVC 111

Query: 100 GTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
             T C +R    + E     +   K      D   + E V C GAC  AP++ +    + 
Sbjct: 112 DGTACHVRKSVPVREALEKHLGLGKGKQTTDDMMFTIEIVSCLGACGLAPVMTVNDKVHP 171

Query: 159 DLTPERLEEIIDAFSTGQ 176
            +TP++  EIID    G+
Sbjct: 172 KMTPDKAVEIIDELKEGE 189


>gi|323702076|ref|ZP_08113744.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532958|gb|EGB22829.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 159

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           + +I +L   QE  G++ +  +   A  L +    V  +ATFY  F L P G R  V +C
Sbjct: 27  NGLIVVLAAIQEVHGYLPKDYLIKTAEELGVPLSDVYGVATFYAAFSLRPRG-RHSVNLC 85

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G  ++  +   ++  K  +   D   S + V C GAC  AP++ +  + Y  
Sbjct: 86  LGTACYVKGAPEVQAMLEKEMGIKAGNTTEDRRFSLDLVRCLGACGIAPVMTVNGEVYPR 145

Query: 160 LTPERLEEIIDAF 172
           +T E++ EI+  +
Sbjct: 146 MTAEKVSEILAKY 158


>gi|169831498|ref|YP_001717480.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638342|gb|ACA59848.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 155

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S++I +L   Q+  G++ +  +  VA+ L ++   V   A+FY  F   P G R  + +C
Sbjct: 23  SSLIQVLSHVQQTVGYLPKPVLVEVADKLGLSLTEVYGTASFYAFFTFRPRG-RHGIALC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             T C ++G   +      ++  K      D   S + V C G C  AP++ + +D +  
Sbjct: 82  NGTACYVKGSAAVKVRLEQELGIKAGDTTPDRRFSLDVVRCIGCCALAPVMTVDEDVHAG 141

Query: 160 LTPERLEEIIDAF 172
           + PE++ EI++ +
Sbjct: 142 VEPEKVPEILEQY 154


>gi|158425076|ref|YP_001526368.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
 gi|158331965|dbj|BAF89450.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
          Length = 159

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           SA    E+I+ +       A +P+L   QE  G+V    + ++A  L+++   V  + TF
Sbjct: 10  SASRAAEIIAEH--RHMDGATMPILHAVQETFGFVPDPVVPMIAESLNLSRAEVYGVVTF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  +++C    C   G EKL      ++  +    + DG ++ E + C 
Sbjct: 68  YHDFRREPPG-RHVIKLCAAEACQSMGSEKLARYAEERLGIEMGETSPDGKVTLEPIYCL 126

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169
           G C  AP  MI       L    ++E++
Sbjct: 127 GLCACAPSAMIDGRLVGRLDEATIDELV 154


>gi|332527762|ref|ZP_08403801.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
           JA2]
 gi|332112158|gb|EGJ12134.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
           JA2]
          Length = 136

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 20/132 (15%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97
           ++P+L   Q   G++ R A+  +A  L+++   V  + ++Y  F+     +PV     +Q
Sbjct: 20  LLPILHELQHTLGYIPREALPRIAQALNLSRAEVHGVVSYYHHFRTEKPTAPV-----LQ 74

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC    C   G ++L +           H  + G    E V C G C ++P  M+G++  
Sbjct: 75  VCRAESCQAMGADRLWD-----------HAQAHGGCQVEAVYCLGLCASSPAAMLGEEPL 123

Query: 158 EDLTPERLEEII 169
             LTPE+L+E++
Sbjct: 124 GRLTPEKLDEVL 135


>gi|295110159|emb|CBL24112.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus obeum
           A2-162]
          Length = 159

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  +++IP++   Q +  ++    +  VA+ + +   +   +ATFY  F 
Sbjct: 11  DEIIEHY--GRKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G    ++VC  T C +R    + E    ++      H   D   + E V C GAC 
Sbjct: 69  FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            AP + +  + +  +TPE+  E+++     +G+T+
Sbjct: 128 LAPTLTVNDEVHPKMTPEKAIELLNEL---RGETV 159


>gi|300245745|gb|ADJ93930.1| putative benzoate-degrading protein BamG [Clostridia bacterium
           enrichment culture clone BF]
          Length = 178

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    +N VI  +       A+IP+L +AQ+  G++       V+  L +    V  + 
Sbjct: 19  DEKLAKLNAVIEEFKDQ--PGALIPVLHKAQQIYGYLPEEVQYHVSQGLRVPLADVYGVV 76

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F ++P G   ++ VC  T C ++G  +L+    +++  K    + D   S E   
Sbjct: 77  TFYALFTMTPRGEN-NIAVCLGTACYVKGAGELVSKISDELGIKIGEISQDRKFSMEATR 135

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C GAC  AP++ + ++ +  L   +L E++  +      + RP
Sbjct: 136 CIGACGLAPVLTVNEEVHGRLDAGQLGELLQKYKEQYAVSSRP 178


>gi|317471700|ref|ZP_07931041.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900804|gb|EFV22777.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 157

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+A+IP++   Q +  ++    +  VA+ L +   +   +ATFY  F   P G +  ++V
Sbjct: 21  QAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYSVATFYENFSFEPKG-KYIIKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    ++E   +++        +D  + + E V C GAC  AP++ +    Y
Sbjct: 80  CNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLETVSCLGACGLAPVLTVNDKVY 139

Query: 158 EDLTPERLEEII 169
             +TP+   E+I
Sbjct: 140 PAMTPDAAAELI 151


>gi|298506754|gb|ADI85477.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 191

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++ +L  AQE  G +S   +  VA  L +   RV  +ATFY  F L   G  + V VC 
Sbjct: 38  ALLEVLHVAQETFGCLSDELMNHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCT 96

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++   +++    N+   K     +DG L+   V C G+C  AP+V++  +T    
Sbjct: 97  GTACYVKRSAEIVTRLENEFDVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRC 156

Query: 161 TPERLEEIIDAF----STGQGDTIRP 182
           TP+     +       S  + +T+RP
Sbjct: 157 TPDSAAAAVRVMLAEKSPARAETVRP 182


>gi|282899669|ref|ZP_06307633.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195548|gb|EFA70481.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 170

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 37  RCQ---SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93
           RCQ    A+I +L RA E  G++    +  +A  L +   RV  +ATFY  F L+P G +
Sbjct: 28  RCQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVATFYHLFSLAPKG-K 86

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
            +  VC  T C ++G ++++      I  K      DG +S     C GAC  AP V+  
Sbjct: 87  HNCVVCTGTACYVKGAQEILTTLETFIQIKAGDTTPDGEVSLMTARCLGACGIAPAVVFD 146

Query: 154 KDTYEDLTPE 163
            +   + T +
Sbjct: 147 SEVLGNQTAQ 156


>gi|222087422|ref|YP_002545959.1| formate dehydrogenase [Agrobacterium radiobacter K84]
 gi|221724870|gb|ACM28026.1| formate dehydrogenase [Agrobacterium radiobacter K84]
          Length = 159

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE+ G+V +  + ++A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHGIQEEFGYVPQDTLPLIAKALNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           C    C   G ++L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  
Sbjct: 84  CRAEACQSMGGDQLAERVKRLLGIDFHQTTL----DGSVTLEPVYCLGLCACAPAAMLDG 139

Query: 155 DTYEDLTPERLEEII 169
           + Y  L  E  E+++
Sbjct: 140 ELYGRLDDEGAEDLV 154


>gi|238026516|ref|YP_002910747.1| formate dehydrogenase subunit gamma [Burkholderia glumae BGR1]
 gi|237875710|gb|ACR28043.1| Formate dehydrogenase, gamma subunit [Burkholderia glumae BGR1]
          Length = 162

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S +  + ++SR+   R   +++ +L   Q++ G+V    +  +A  L+++   V  + T+
Sbjct: 4   SPVSADALVSRH--VRAGRSLVAILHAIQDEAGYVPEGCVPPLAKALNLSRAEVHGVLTY 61

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+ +P   R  +Q+C    C   G E L+E  + +   + +    +G ++ E V C 
Sbjct: 62  YHHFRTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCR-IDAGHNGDVALESVYCL 119

Query: 142 GACVNAPMVMIGKDTYEDLTPERL 165
           G C  +P  MI  + +  L+P R 
Sbjct: 120 GFCAQSPSAMINGEPHARLSPARF 143


>gi|83721159|ref|YP_442162.1| formate dehydrogenase subunit gamma [Burkholderia thailandensis
           E264]
 gi|257138351|ref|ZP_05586613.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           E264]
 gi|83654984|gb|ABC39047.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           E264]
          Length = 157

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 139 SPERFDALFDA 149


>gi|225572044|ref|ZP_03780908.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040479|gb|EEG50725.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 168

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R +S++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 20  DEIIEEY--GRKESSLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYSVATFYENFS 77

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
             P G    ++VC  T C +R    + E    ++   H+K  H   D   + E V C GA
Sbjct: 78  FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSHKK--HTTDDMMFTVETVSCLGA 134

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170
           C  AP + +    +  ++PE+  E+++
Sbjct: 135 CGLAPALNVNDVVHPKMSPEKALEMLE 161


>gi|310658218|ref|YP_003935939.1| fe hydrogenase, electron-transfer subunit [Clostridium sticklandii
           DSM 519]
 gi|308824996|emb|CBH21034.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 159

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A+I +L +AQ   G++ +     +   L +   +V  + +FY+ F   P G +  + V
Sbjct: 25  ETALIEVLHKAQNLFGFIPKEVQLFIGEKLGVPASKVFGVVSFYSYFTTEPKG-KYVINV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +R  + L+      +  KP     +   S E + C GAC  AP++M+  + Y 
Sbjct: 84  CMGTACFVRKADSLLRELEKVLCIKPGETTENKMYSIEALRCVGACGLAPVIMVNDEVYG 143

Query: 159 DLTPERLEEIIDAFS 173
            +T + + +I+  ++
Sbjct: 144 KVTVDDIPKILAKYA 158


>gi|167581038|ref|ZP_02373912.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           TXDOH]
          Length = 157

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 139 SPERFDALFDA 149


>gi|303248402|ref|ZP_07334662.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302490200|gb|EFL50118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 165

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   G++   A+   + +L M  + +  +ATFY      PVG    + V
Sbjct: 22  REAAVDVMYALQHHYGYLCDEAVHYASKLLGMTTLELESLATFYDYLYRRPVGHYV-IHV 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C +   + + +     +   P     DG  +     C G C NAP ++I    Y 
Sbjct: 81  CDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGMFTVLPSACIGNCHNAPTMLINGRFYN 140

Query: 159 DLTPERLEEII 169
            LTPER++ ++
Sbjct: 141 KLTPERIDAVL 151


>gi|253577814|ref|ZP_04855086.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850132|gb|EES78090.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
          Length = 159

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  +++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIEHY--GRTAASLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACV 145
             P G    ++VC  T C +R    + E    ++      H   D   + E V C GAC 
Sbjct: 69  FEPKGKYV-IKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP + +  + +  +TPE+  E+++
Sbjct: 128 LAPTLTVNDEVHPKMTPEKAVELLN 152


>gi|260466531|ref|ZP_05812720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
 gi|259029680|gb|EEW30967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
          Length = 159

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            QP+S   +  +A  V E+     P      ++P+L   QE+ G V    + V+A+ L++
Sbjct: 3   MQPASTEIASRTAAIVQELKDVEGP------LLPILHGIQEEFGHVPHDVLPVIADGLNL 56

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
           +   V  + TFY  F+  P G R  +++C    C   G + +    +  +         D
Sbjct: 57  SRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKVKQLLGIDFHETTRD 115

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           G+++ E V C G C  +P  M+  +    L  ++++EI+
Sbjct: 116 GSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIV 154


>gi|39997816|ref|NP_953767.1| bidirectional hydrogenase complex protein HoxE [Geobacter
           sulfurreducens PCA]
 gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, putative [Geobacter sulfurreducens PCA]
          Length = 191

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++ +L  AQE  G +S   +  VA  L +   RV  +ATFY  F L   G  + V VC 
Sbjct: 38  ALLEVLHVAQETFGCLSDELMTHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCT 96

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++   +++    N+   K     +DG L+   V C G+C  AP+V++  +T    
Sbjct: 97  GTACYVKRSAEIVTRLENEFDVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRC 156

Query: 161 TPERLEEIIDAF----STGQGDTIRP 182
           TP+     +       S  + +T+RP
Sbjct: 157 TPDSAAAAVRVMLAEKSPARAETVRP 182


>gi|160902611|ref|YP_001568192.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
 gi|160360255|gb|ABX31869.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 154

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L   QE  G++S   I  +A   D+   R+  + +FY+ F L P G +  V+VC +  C 
Sbjct: 28  LHDIQETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTG-KYIVRVCDSVSCR 86

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           L     L+   ++ +  +      D   + E  EC G C   P++M+    Y  LT  + 
Sbjct: 87  LNESADLVRALKDYLKVEENETTKDKKFTLEVAECLGHCDEGPVMMVNDTYYTHLTVTKA 146

Query: 166 EEIIDAF 172
            +I+D+ 
Sbjct: 147 IQILDSL 153


>gi|253997400|ref|YP_003049464.1| formate dehydrogenase subunit gamma [Methylotenera mobilis JLW8]
 gi|253984079|gb|ACT48937.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera
           mobilis JLW8]
          Length = 160

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++PLL   Q+  G+V  AA   ++  L ++   V  + TFY  F+    G R  +Q+C 
Sbjct: 28  ALMPLLHAIQDNIGYVPEAAYPQISKALALSVAEVHGVVTFYHHFRTHKPG-RNVMQICR 86

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L    +  ++       +D  ++ E V C G C  +P VM+  + Y  +
Sbjct: 87  AESCQAMGSEALEAHAKKCLNIDYHQTTADDAVTLEAVYCLGNCALSPSVMMNDEIYGRV 146

Query: 161 TPERLEEII 169
           +P  L+ +I
Sbjct: 147 SPSDLDALI 155


>gi|167619116|ref|ZP_02387747.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           Bt4]
          Length = 151

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 15  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIRLCR 73

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 74  AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 132

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 133 SPERFDALFDA 143


>gi|118116827|ref|XP_001236209.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 61

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 2/48 (4%)

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    +PGP
Sbjct: 16  EVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPGP 61


>gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia
           acidovorans SPH-1]
          Length = 727

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R    +I LL   Q+  G +  AA+  +A+ L+++   V  + ++Y  F+ +P G R  
Sbjct: 39  ARRPGPLIELLHAVQDMLGHIPEAAVPRIADALNLSRAEVHGVISYYPHFRSTPAG-RHV 97

Query: 96  VQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +QVC    C  RG + L+        C +  H      ++DG ++ E V C G C ++P 
Sbjct: 98  LQVCRAEACQSRGADALLAHAGQALGCGSSGHGHEHGTSADGAVTLEPVYCLGLCASSPA 157

Query: 150 VMIGKDTYEDLTPERLEEII 169
           VM+    +  ++   L+ +I
Sbjct: 158 VMLDGQPHAHVSANGLDALI 177


>gi|320161179|ref|YP_004174403.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995032|dbj|BAJ63803.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 205

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 45  LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
           +L   Q Q G++S    + +AN L +    V  + +FY+ F  +P G    ++ C  T C
Sbjct: 72  ILNEVQSQIGFISEPMQQYIANKLHVPVSTVHGVVSFYSFFTTTPRGKHT-IKFCMGTAC 130

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164
            + G  +LIE  +  +   P     DG ++ E   C GAC  AP++++ ++    + P +
Sbjct: 131 YVGGTPQLIEKAKQVLGIDPGETTPDGQITLELCRCVGACSQAPVIVVDEEIQGRVRPNK 190

Query: 165 LEEII 169
             +++
Sbjct: 191 FPQLL 195


>gi|29375955|ref|NP_815109.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
           [Enterococcus faecalis V583]
 gi|227518654|ref|ZP_03948703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX0104]
 gi|227553184|ref|ZP_03983233.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis HH22]
 gi|229545927|ref|ZP_04434652.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX1322]
 gi|229550121|ref|ZP_04438846.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis ATCC 29200]
 gi|255972898|ref|ZP_05423484.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T1]
 gi|255975953|ref|ZP_05426539.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T2]
 gi|256618968|ref|ZP_05475814.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
 gi|256762395|ref|ZP_05502975.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T3]
 gi|256853025|ref|ZP_05558395.1| predicted protein [Enterococcus faecalis T8]
 gi|256958879|ref|ZP_05563050.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256962027|ref|ZP_05566198.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
 gi|256965225|ref|ZP_05569396.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
 gi|257082643|ref|ZP_05577004.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
 gi|257085352|ref|ZP_05579713.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
 gi|257086847|ref|ZP_05581208.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
 gi|257089782|ref|ZP_05584143.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis CH188]
 gi|257415998|ref|ZP_05592992.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis AR01/DG]
 gi|257419200|ref|ZP_05596194.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis T11]
 gi|257422722|ref|ZP_05599712.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis X98]
 gi|293383049|ref|ZP_06628967.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis R712]
 gi|293388210|ref|ZP_06632731.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis S613]
 gi|294779581|ref|ZP_06744975.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis PC1.1]
 gi|307271122|ref|ZP_07552405.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4248]
 gi|307273328|ref|ZP_07554573.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0855]
 gi|307277474|ref|ZP_07558566.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2134]
 gi|307279195|ref|ZP_07560253.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0860]
 gi|307288116|ref|ZP_07568126.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0109]
 gi|307291375|ref|ZP_07571259.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0411]
 gi|312900654|ref|ZP_07759951.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0470]
 gi|312904132|ref|ZP_07763300.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0635]
 gi|312907362|ref|ZP_07766353.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312909978|ref|ZP_07768826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis DAPTO 516]
 gi|312952392|ref|ZP_07771267.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0102]
 gi|29343417|gb|AAO81179.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
           [Enterococcus faecalis V583]
 gi|227073911|gb|EEI11874.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX0104]
 gi|227177710|gb|EEI58682.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis HH22]
 gi|229304707|gb|EEN70703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis ATCC 29200]
 gi|229308995|gb|EEN74982.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX1322]
 gi|255963916|gb|EET96392.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T1]
 gi|255968825|gb|EET99447.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T2]
 gi|256598495|gb|EEU17671.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
 gi|256683646|gb|EEU23341.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T3]
 gi|256711484|gb|EEU26522.1| predicted protein [Enterococcus faecalis T8]
 gi|256949375|gb|EEU66007.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256952523|gb|EEU69155.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
 gi|256955721|gb|EEU72353.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
 gi|256990673|gb|EEU77975.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
 gi|256993382|gb|EEU80684.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
 gi|256994877|gb|EEU82179.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
 gi|256998594|gb|EEU85114.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis CH188]
 gi|257157826|gb|EEU87786.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ARO1/DG]
 gi|257161028|gb|EEU90988.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis T11]
 gi|257164546|gb|EEU94506.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis X98]
 gi|291079714|gb|EFE17078.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis R712]
 gi|291082394|gb|EFE19357.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis S613]
 gi|294453371|gb|EFG21779.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis PC1.1]
 gi|306497606|gb|EFM67139.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0411]
 gi|306500852|gb|EFM70170.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0109]
 gi|306504320|gb|EFM73532.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0860]
 gi|306505739|gb|EFM74917.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2134]
 gi|306509855|gb|EFM78880.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0855]
 gi|306512620|gb|EFM81269.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4248]
 gi|310626390|gb|EFQ09673.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|310629776|gb|EFQ13059.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0102]
 gi|310632608|gb|EFQ15891.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0635]
 gi|311289936|gb|EFQ68492.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis DAPTO 516]
 gi|311292135|gb|EFQ70691.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0470]
 gi|315027370|gb|EFT39302.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2137]
 gi|315029990|gb|EFT41922.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4000]
 gi|315033791|gb|EFT45723.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0017]
 gi|315036876|gb|EFT48808.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0027]
 gi|315147885|gb|EFT91901.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4244]
 gi|315150638|gb|EFT94654.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0012]
 gi|315153355|gb|EFT97371.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0031]
 gi|315155868|gb|EFT99884.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0043]
 gi|315157965|gb|EFU01982.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0312]
 gi|315164268|gb|EFU08285.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1302]
 gi|315166638|gb|EFU10655.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1341]
 gi|315170078|gb|EFU14095.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1342]
 gi|315174469|gb|EFU18486.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1346]
 gi|315575556|gb|EFU87747.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0309B]
 gi|315578477|gb|EFU90668.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0630]
 gi|315580002|gb|EFU92193.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0309A]
 gi|327535029|gb|AEA93863.1| putative NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis OG1RF]
 gi|329571420|gb|EGG53107.1| Respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1467]
          Length = 162

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
           P R  + +I L  +   +EG++ +   ++VA  L +   RV EI +FY   +  P     
Sbjct: 20  PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQAKYV 77

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C +TPC   G   + EV    +         DG   +  + C GAC   P++ I  
Sbjct: 78  -LKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKD 136

Query: 155 DTYEDLTPERLEEII 169
             +  LT E++ ++I
Sbjct: 137 TVFSQLTEEKIYQLI 151


>gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
           6192]
 gi|306532049|gb|ADN01583.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
           6192]
          Length = 164

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YPP R    +I   ++      ++    +E VA  LD+    +  I +FY+ F   P G 
Sbjct: 11  YPPRRDNLLLILHDIQDHNPRNYLPDDEVEEVARYLDIPVSELDGIISFYSMFSRRPRG- 69

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  +++C +  C L G   L    +  +  K      DG  + E V C G C   P +M+
Sbjct: 70  RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNCLGCCDKGPSLMV 129

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
             + +  +T E+L+ +I+  +  +G    P
Sbjct: 130 NDELHTRMTREKLDLLIEELARREGVAYEP 159


>gi|312144097|ref|YP_003995543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904748|gb|ADQ15189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 147

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + +++  L   Q+  G++    IE +A   +++      + +FY+     P G +  +++
Sbjct: 14  EGSLLEELHNVQDTYGYIPENEIENLAEKFNLSRANAYGVISFYSMLYTEPTG-KYIIRI 72

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C L   E L++  ++ +  +    + D   + E VEC G C   P++MI    YE
Sbjct: 73  CDSISCHLNESESLLKAVKSYLGIENNETSKDKKFTLEVVECLGHCAEGPVMMINDQIYE 132

Query: 159 DLTPERLEEIID 170
            LT  +  EI++
Sbjct: 133 KLTKTKAIEILN 144


>gi|326790678|ref|YP_004308499.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541442|gb|ADZ83301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
          Length = 158

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S++I +L   QE   ++       ++  L M+  ++  +ATFY  F L P G +  +++C
Sbjct: 22  SSIISILQDIQEIYRYIPEEIFPYLSEKLGMSTAKIYGVATFYENFSLEPKG-KYVIKIC 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYE 158
             T C +R    ++   R  +        +D  L + E V C GAC  AP++ I    Y 
Sbjct: 81  DGTACHVRKSIPILNALRETLSLSEEKVTTDDLLFTVETVSCLGACGLAPVMTINDKVYG 140

Query: 159 DLTPERLEEII 169
            +TPE+ + ++
Sbjct: 141 SMTPEKAKALL 151


>gi|227823605|ref|YP_002827578.1| formate dehydrogenase subunit gamma [Sinorhizobium fredii NGR234]
 gi|227342607|gb|ACP26825.1| NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium
           fredii NGR234]
          Length = 159

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V  A + V+A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 25  EGPLLPILHEIQDEFGYVPEACLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  +  +         DG ++ E V C G C  +P  M+  + + 
Sbjct: 84  CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143

Query: 159 DLTPERLEEII 169
            L    LE ++
Sbjct: 144 RLDDAELEALV 154


>gi|94272887|ref|ZP_01292198.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 171

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             +I  L   Q+  G++   A+  +A  L +   +V  + TFY  F L P G  + V VC
Sbjct: 6   GGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKGRHSCV-VC 64

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             T C ++G  +++       H K     +DG LS     C GAC  AP V++
Sbjct: 65  LGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVL 117


>gi|94265733|ref|ZP_01289470.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 200

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             +I  L   Q+  G++   A+  +A  L +   +V  + TFY  F L P G  + V VC
Sbjct: 35  GGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKGRHSCV-VC 93

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             T C ++G  +++       H K     +DG LS     C GAC  AP V++
Sbjct: 94  LGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVL 146


>gi|258516936|ref|YP_003193158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780641|gb|ACV64535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R +  +I +L  AQ+  G++       +A  +D+    V  + TFYT F   P G R  
Sbjct: 54  GRERGELIRVLYGAQKIFGYLPPEVQAYIAAKMDIPISEVNGVVTFYTLFVTEPRG-RHT 112

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+VC  T C ++G   +++  + ++         DG  +     C GAC  AP++ + ++
Sbjct: 113 VRVCTGTACYVKGAADIMDKFKQELKLDGRETGEDGLFTLTSTRCIGACGMAPVLTVDEE 172

Query: 156 TYEDLTPERLEEIIDAF 172
            Y +LT + +  I++ +
Sbjct: 173 VYGNLTAKDVITILEKY 189


>gi|239815992|ref|YP_002944902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus S110]
 gi|239802569|gb|ACS19636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus S110]
          Length = 154

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L   Q+  G V   A+ ++A   +++   V  + ++Y  F+ +P G R  VQVC  
Sbjct: 21  LLPALHGIQDALGHVPPDAVPLIAEQFNLSRAEVHGVVSYYHHFRSAPAG-RLLVQVCRA 79

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G + L+     ++       ++DG  S E V C G C ++P + +  + +  +T
Sbjct: 80  EACKAMGADALLAHAEQRLGCGVHGTSADGQCSLEPVFCLGLCASSPAIAVNGEVHARIT 139

Query: 162 PERLEEI 168
           P   ++I
Sbjct: 140 PALFDDI 146


>gi|144897649|emb|CAM74513.1| NADH dehydrogenase I chain E [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 152

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 1/128 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   QE+ G+V +AA+ ++A  L+++   +  + +FY +F+ S  G R  V+V
Sbjct: 22  RGALLPMLHALQEEFGYVDQAAVPLLAAALNLSQAEIHGVISFYHEFRQSRSG-RHVVKV 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C  RG + L+E  + K+        SDG  + E V C G C   P  ++      
Sbjct: 81  CVAEACQARGSDTLVEHLKAKLGLDLGQTGSDGAFTLEAVYCLGNCALGPSALVDDRLLG 140

Query: 159 DLTPERLE 166
            L+P RL+
Sbjct: 141 RLSPARLD 148


>gi|313200987|ref|YP_004039645.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Methylovorus sp.
           MP688]
 gi|312440303|gb|ADQ84409.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
           MP688]
          Length = 156

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q+  G+V   +   ++  L+++   +  + TFY  F+  P G R  +Q+C    C   G 
Sbjct: 31  QDDVGYVPEESYGSISKALNLSVAEIHGVVTFYHHFRTHPPG-RHVIQICRAESCQSMGS 89

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            +L    +  +        SDG+++ E V C G C  +P + + ++ Y  ++P+RL+ II
Sbjct: 90  TELEAHAKASLGIDYHQTTSDGSITLEPVYCLGNCACSPAITVDEEVYGRVSPKRLDAII 149


>gi|86359440|ref|YP_471332.1| formate dehydrogenase subunit gamma [Rhizobium etli CFN 42]
 gi|86283542|gb|ABC92605.1| formate dehydrogenase, gamma subunit protein [Rhizobium etli CFN
           42]
          Length = 159

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L + Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++C  
Sbjct: 28  LLPILHQVQQEFGYVPQQALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G + L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  + Y
Sbjct: 87  EACQSMGGDALAERIKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 142

Query: 158 EDLTPERLEEII 169
             L  +   E++
Sbjct: 143 GRLDDQLATELV 154


>gi|253998888|ref|YP_003050951.1| formate dehydrogenase subunit gamma [Methylovorus sp. SIP3-4]
 gi|253985567|gb|ACT50424.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
           SIP3-4]
          Length = 156

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q+  G+V   +   ++  L+++   +  + TFY  F+  P G R  +Q+C    C   G 
Sbjct: 31  QDDVGYVPEESYGSISKALNLSVAEIHGVVTFYHHFRTHPPG-RHVIQICRAESCQSMGS 89

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            +L    +  +        SDG+++ E V C G C  +P + + ++ Y  ++P+RL+ II
Sbjct: 90  TELEAHAKASLGIDYHQTTSDGSITLEPVYCLGNCACSPAITVDEEVYGRVSPKRLDAII 149


>gi|296127183|ref|YP_003634435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
           murdochii DSM 12563]
 gi|296018999|gb|ADG72236.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
           murdochii DSM 12563]
          Length = 163

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +    Q+  G+V R   + V+  +++   R+ EI TFY  F + P     ++ V
Sbjct: 28  EGNLIMICHGIQKHYGYVPRNVAKYVSEQINIPLARIYEILTFYNYFTMEP-PAENNIAV 86

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDT 156
           C  T C L+G  +L+E  + K++ K   + S D     EEV C G C  AP++    D 
Sbjct: 87  CMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKLEEVRCIGCCGLAPVITFNGDV 145


>gi|254413281|ref|ZP_05027052.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179901|gb|EDX74894.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Microcoleus chthonoplastes PCC 7420]
          Length = 197

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P GT   V VC  
Sbjct: 66  LIEVLHKAQEAFGYLEEDVLLYVARGLKLPLSRVYGVATFYHLFSLKPGGTHTCV-VCTG 124

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           T C ++G  +++         +      DG +S     C GAC  AP V+ 
Sbjct: 125 TACYVKGGGQVLSALEEHFGIQVGDTTPDGEMSLLSARCLGACGIAPAVVF 175


>gi|282895631|ref|ZP_06303756.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis
           brookii D9]
 gi|281199325|gb|EFA74190.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Raphidiopsis
           brookii D9]
          Length = 170

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 37  RCQ---SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93
           RCQ    A+I +L RA E  G++    +  +A  L +   RV  +ATFY  F L+P G +
Sbjct: 28  RCQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVATFYHLFSLAPKG-K 86

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
            +  VC  T C ++G + ++      I  K      DG +S     C GAC  AP V+  
Sbjct: 87  HNCVVCTGTACYVKGSQAILTALETFIQIKAGDTTPDGEVSVMTARCLGACGIAPAVVFD 146

Query: 154 KDTYEDLTPE 163
            +   + T +
Sbjct: 147 GEVLGNQTAQ 156


>gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + A  ++ +++RYP  +    ++P+++   +++G++S  ++  +AN + M    V 
Sbjct: 74  TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMHAPHVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134
            + + Y  F      +  HV +C    CM++G +K+++  + K   +  H   + +G  +
Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQIDRI 189
           +  +   G CVN  P ++I   G D  E LT    + I ++ ++ +G T +     I   
Sbjct: 191 FHGMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDNIEESLNSLKGKTYKWAKNNIVEQ 250

Query: 190 SSAPAGGLTSLLDNN 204
           S    G   SLL+N+
Sbjct: 251 SLKSKGKEYSLLENH 265


>gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + A  ++ +++RYP  +    ++P+++   +++G++S  ++  +AN + M   +V 
Sbjct: 74  TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMYAPQVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134
            + + Y  F      +  HV +C    CM++G +K+++  + K   +  H   + +G  +
Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +  +   G CVN  P ++I   G D  E LT    + I ++ ++ +G T +
Sbjct: 191 FHAMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDSIEESLNSLKGKTYK 241


>gi|297539619|ref|YP_003675388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
           301]
 gi|297258966|gb|ADI30811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
           301]
          Length = 159

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++PLL   Q+  G+V  ++   +   L ++   V  + TFY  F+    G R  +Q+C 
Sbjct: 27  ALMPLLHAIQDNIGYVPESSYSQIGKALSLSVAEVHGVVTFYHHFRTHKPG-RHVMQICR 85

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L    +  ++       SD  ++ E V C G C  +P VM+ ++ Y  +
Sbjct: 86  AESCQSMGSEALEAHAKKCLNVDYHQTTSDDAITLEAVYCLGNCALSPAVMMDEEVYGRV 145

Query: 161 TPERLEEII 169
           + E L+ +I
Sbjct: 146 SAEDLDALI 154


>gi|167570806|ref|ZP_02363680.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
           C6786]
          Length = 154

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 18  SLVAILHAIQDEAGYVPSACVEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 76

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 77  AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDELHAKM 135

Query: 161 TPERLEEIIDA 171
           T ER + ++DA
Sbjct: 136 TAERFDALLDA 146


>gi|319937312|ref|ZP_08011719.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807678|gb|EFW04271.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 163

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++S  ++++VI R+   +    +  +L   Q + G++   A+E ++  LD    ++  
Sbjct: 4   LNQKSLDFIDDVIYRHKDEK--GPIKLMLHEIQNELGYIPFEAMEKMSEALDEPIAKIYG 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWE 136
           + TFY+QF   P G    + VC  T C + G + ++++   ++   P++  S DG  S +
Sbjct: 62  VVTFYSQFTTEPKGKHV-ISVCLGTACYVNGSQTILDLLV-EMTGAPVNGTSQDGVFSID 119

Query: 137 EVECQGACVNAPMVMI 152
              C GAC  AP+V +
Sbjct: 120 ATRCVGACGLAPVVSV 135


>gi|114765414|ref|ZP_01444529.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
 gi|114542257|gb|EAU45287.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
          Length = 155

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   QE  G V  AA+ ++A  L++    V  + +FY  F+ +P G R  V++C  
Sbjct: 25  LLPILHAIQEAYGHVPEAALPLIAETLNLTQAEVHGVMSFYHDFRKAPAG-RHVVKICRA 83

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             C   G   L +    K+        +DG ++ E V C G C  AP  MIG
Sbjct: 84  EACQSMGAGALSDAVLEKLGIGWGGTTADGRVTVEAVYCLGLCACAPAAMIG 135


>gi|150398097|ref|YP_001328564.1| formate dehydrogenase subunit gamma [Sinorhizobium medicae WSM419]
 gi|150029612|gb|ABR61729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           medicae WSM419]
          Length = 159

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R +  +IP+L   Q++ G+V   ++ V+A  L+++   V  + TFY  F+  P G R  +
Sbjct: 23  RLEGPLIPILHEIQDEFGYVPEESLPVIAQELNLSRAEVYGVVTFYHDFREHPAG-RHVL 81

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           ++C    C   G ++L E  +  +         DG ++ E V C G C  +P  M+  + 
Sbjct: 82  KLCRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEL 141

Query: 157 YEDLTPERLEEIIDAF 172
           +  L     E ++DA 
Sbjct: 142 HARLD----EAVLDAL 153


>gi|86748475|ref|YP_484971.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
 gi|86571503|gb|ABD06060.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 157

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   QE EGWVS A ++  A  L +    +  +ATFY+Q   SPVG    + +
Sbjct: 22  KAAMLEALKLVQEAEGWVSDAHLKEAAEALGVTTAEIDSLATFYSQIFRSPVGDTV-ILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156
           C    C L G + + +   +++         DG  +   + C G C  AP+ ++G  +  
Sbjct: 81  CDGLSCFLCGGDAVRDAVMSRLGIGFGETTPDGKFTLINICCVGGCDLAPVALVGPERKL 140

Query: 157 YEDLTPERLEEII 169
              LT + L+ +I
Sbjct: 141 VGPLTADDLDALI 153


>gi|209551212|ref|YP_002283129.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536968|gb|ACI56903.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 159

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 9/123 (7%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + +++P+L   Q++ G++ + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGSLLPILHEVQDEFGYIPQEAVPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           C    C   G + L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  
Sbjct: 84  CRAEACQSMGGDALAERVKTLLGIDFHQTTL----DGSVTLEPVYCLGLCACAPSAMLDG 139

Query: 155 DTY 157
           + Y
Sbjct: 140 EVY 142


>gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ +++RY  +     ++P+L   QE  G++     + ++  L +    V  + +FY+ +
Sbjct: 23  VDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCQLKVPGSDVFGVMSFYSMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    ++ C + PC + G E ++   + ++  K     +D   + E   C G C 
Sbjct: 81  TWQPKGKYV-IRFCESPPCHIAGAENMLHFMQEELGIKVGETTADSLFTLETTACLGICE 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            AP + I +  + +LT +++ +I+  +  G+
Sbjct: 140 VAPAMQINEVVHGNLTKDKIRQILADYRAGK 170


>gi|167563644|ref|ZP_02356560.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
           EO147]
          Length = 157

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDEAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCR-IDGEHGGEVALESVYCLGLCAQSPSLTINDELHAKM 138

Query: 161 TPERLEEIIDA 171
           T ER + ++DA
Sbjct: 139 TAERFDALLDA 149


>gi|186475494|ref|YP_001856964.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           phymatum STM815]
 gi|184191953|gb|ACC69918.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           phymatum STM815]
          Length = 170

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +A+  +E++ R+   +   +++ LL   Q+  G+V    +  +A  ++++   V  + T+
Sbjct: 5   NALAPDELVRRH--VQPGMSLVALLHAIQDDVGFVPPDTVAPLARTMNLSRAEVHGVITY 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSD----G 131
           Y  F+ SP      VQ+C    C   G E L   IE    CR   H+   H   D    G
Sbjct: 63  YHHFRQSPAAPVT-VQLCRAEACRSMGTEALAQHIEARTGCRFDAHKHGAHDGHDHACDG 121

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            +  E V C G C  +P +MI  + +  +TP++ + ++ A
Sbjct: 122 AVGLESVYCLGQCALSPAMMINGELHARVTPQKFDALLAA 161


>gi|225621402|ref|YP_002722661.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225216223|gb|ACN84957.1| DH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 168

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S    E+ A  +  ++S++  +  +  +I +    Q+  G+V R   + V+   ++   R
Sbjct: 6   SLLTQEDIADEIKSLVSKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEETNIPLAR 63

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTL 133
           + EI TFY  F L P     ++ VC  T C L+G  +L+E  + K++ K   + S D   
Sbjct: 64  IYEILTFYNYFTLEPPAEN-NIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKY 122

Query: 134 SWEEVECQGACVNAPMVMIGKDT 156
             EEV C G C  AP++   ++ 
Sbjct: 123 KLEEVRCIGCCGLAPVITFNEEV 145


>gi|115523731|ref|YP_780642.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
 gi|115517678|gb|ABJ05662.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 157

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   Q  EGWVS A +   A +L +    +  +ATFY+    SPVG    + +
Sbjct: 22  KAAMLEALKLVQAAEGWVSDAHLAEAAGVLGVTTAEIDSLATFYSHIFRSPVGETV-LLL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C    C L G + + +    K+         DG  +   V C G C  AP  ++G D
Sbjct: 81  CDGLSCYLNGADDVRDAVMQKLGIGFGETTPDGKFTLINVCCVGGCDRAPAALVGPD 137


>gi|323480623|gb|ADX80062.1| NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis
           62]
          Length = 148

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
           P R  + +I L  +   +EG++ +   ++VA  L +   RV EI +FY   +  P   + 
Sbjct: 20  PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEP-QAKY 76

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C +TPC   G   + EV    +         DG   +  + C GAC   P++ I  
Sbjct: 77  VLKICNSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKD 136

Query: 155 DTYEDLTPERL 165
             +  LT E++
Sbjct: 137 TVFSQLTEEKI 147


>gi|91975809|ref|YP_568468.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
 gi|91682265|gb|ABE38567.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 157

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   QE EGWVS A ++  A  L +    +  +ATFY+Q    PVG    + +
Sbjct: 22  KAAMVEALKLVQEAEGWVSDAHLKEAAQALGVTTAEIESLATFYSQIFRRPVGDTV-ILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDT 156
           C    C L G + + +   +++         DG  +   + C G C  AP+ ++G  +  
Sbjct: 81  CDGLSCYLCGGDAVRDAIMSRLGIGFGETTPDGKFTLINICCVGGCDRAPVALVGPERKL 140

Query: 157 YEDLTPERLEEIIDA 171
              LT + L+ +I A
Sbjct: 141 VGPLTADDLDALIGA 155


>gi|217979754|ref|YP_002363901.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
           silvestris BL2]
 gi|217505130|gb|ACK52539.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
           silvestris BL2]
          Length = 161

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S+  +E +A  ++E +    P      ++P+L   QE+ G+V+  A+ ++A  L+++  
Sbjct: 8   ASYWNAERAAEIIHEHLGLEGP------MLPILHALQEEFGYVNGDAVPMIAKALNLSRA 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY  F+  P G R  +++C    C   G E+L       +  +     +DG L
Sbjct: 62  EVHGVTSFYHDFRHEPAG-RHVLKLCRGESCQSMGSEELARKFLTGLGIEWGGTTADGDL 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           + E + C G C  +P  M+  +    L  E L E ++  S 
Sbjct: 121 TVEAIYCLGLCACSPAAMLDDELIGALDEETLAEAVNTVSA 161


>gi|154505521|ref|ZP_02042259.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
 gi|153794179|gb|EDN76599.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
          Length = 164

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q ++IP++   Q +  ++    +  VA  + ++  +   +ATFY  F   P G    ++V
Sbjct: 28  QESLIPIIQDIQSEYRYLPPELLSYVAEKIGISEAKAYSVATFYENFSFEPKGKYV-IKV 86

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    ++E   +++        +D  L + E V C GAC  AP++ +    Y
Sbjct: 87  CNGTACHVRKSIPILERLYSELGISGEKNTTDDMLFTVETVSCLGACGLAPVLTVNDTVY 146

Query: 158 EDLTPERLEEII 169
             +TP+   E+I
Sbjct: 147 PKMTPDAAAELI 158


>gi|294140412|ref|YP_003556390.1| NADH dehydrogenase I subunit E [Shewanella violacea DSS12]
 gi|293326881|dbj|BAJ01612.1| NADH dehydrogenase I, E subunit [Shewanella violacea DSS12]
          Length = 228

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q+Q GWVS  ++ +++  + ++   +  +ATFY       VG    +  C    C L G 
Sbjct: 102 QQQRGWVSDTSLSLLSAYIQVSVAELDSVATFYNLIFRQAVG-EVVLHPCDGISCDLMGG 160

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            ++      K+H  P     D   +   + C GAC  AP+++  K  Y  LT  ++ ++I
Sbjct: 161 VEVRAAISQKLHINPGETTPDNRFTLIPLPCLGACDKAPVMIASKHVYPHLTLNKIAQLI 220

Query: 170 D 170
           D
Sbjct: 221 D 221


>gi|167837457|ref|ZP_02464340.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           thailandensis MSMB43]
          Length = 157

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   + +     G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCR-IDGGHGGEVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 139 SPARFDALFDA 149


>gi|296448074|ref|ZP_06889977.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
           trichosporium OB3b]
 gi|296254431|gb|EFH01555.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
           trichosporium OB3b]
          Length = 184

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +   +P+L   QE+ G+V  AA+  +A  L+++   +  + +FY  F+ +P G R  +++
Sbjct: 49  EGPALPILHAIQEEFGYVPEAAVPQIAQSLNISRAEMHGVVSFYHDFRRAPAG-RHVLKL 107

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G EK+ +    ++  +     +DG+L+ E V C G C ++P  +   +   
Sbjct: 108 CRAESCQSMGSEKIAKDFLERVKLEWGGTANDGSLTVEAVYCLGLCAHSPGALYDNEPIG 167

Query: 159 DLTPERLEEI 168
            +  E L+E+
Sbjct: 168 RVDAEMLDEL 177


>gi|150391793|ref|YP_001321842.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951655|gb|ABR50183.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 159

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M    L EE FQ       EE                 +  ++P+L  AQ+  G +    
Sbjct: 1   MKKTSLTEENFQKLQIVMEEEKGE--------------KGPLMPVLHEAQKIFGCIPLEV 46

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + +   + +    +  + TFY+QF L P G    + VC  T C ++G + +++     I
Sbjct: 47  QKKICEEMKIPLSEIYGVITFYSQFSLEPKGDYV-IGVCMGTACYVKGAQPILDKVSELI 105

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             K    + DG  S     C GAC  AP++ + +D Y  L    +  I++ +
Sbjct: 106 GAKAGCNSGDGRFSLVATRCIGACGLAPILTVNEDVYGRLKLTDIPGIVEKY 157


>gi|241206611|ref|YP_002977707.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860501|gb|ACS58168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 159

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++C  
Sbjct: 28  LLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G + L E  +  +    HQ  L    DG ++ E V C G C  AP VM+  + Y
Sbjct: 87  EACQSMGGDALAERVKALLGIDFHQTTL----DGGVTLEPVYCLGLCACAPAVMLDGEVY 142

Query: 158 EDLTPERLEEII 169
             +  +   E++
Sbjct: 143 GRVDDQTAAELV 154


>gi|15966764|ref|NP_387117.1| formate dehydrogenase subunit gamma [Sinorhizobium meliloti 1021]
 gi|307301592|ref|ZP_07581351.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti BL225C]
 gi|307316384|ref|ZP_07595828.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti AK83]
 gi|15076036|emb|CAC47590.1| Putative NAD-dependent formate dehydrogenase gamma subunit
           [Sinorhizobium meliloti 1021]
 gi|306898224|gb|EFN28966.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti AK83]
 gi|306903290|gb|EFN33879.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti BL225C]
          Length = 159

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +IP+L   Q++ G+V   ++ V+A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 25  EGPLIPILHEIQDEFGYVPEESLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  +  +         DG ++ E V C G C  +P  M+  + + 
Sbjct: 84  CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143

Query: 159 DLTPERLEEII 169
            L    LE ++
Sbjct: 144 RLDETVLEALV 154


>gi|297616329|ref|YP_003701488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144166|gb|ADI00923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 148

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+ F +   G    +++C + PC + G  +++     ++  K      DG  + E 
Sbjct: 54  VATFYSMFSVKTRGKNV-IRICESAPCHIAGAAQVVAALEKELGIKMGETTPDGKFTLEF 112

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            EC G C   P++ I    Y D+TPE++  I+  +
Sbjct: 113 TECVGQCQATPVITINGKPYGDITPEKIPAILAEY 147


>gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Shewanella woodyi ATCC 51908]
          Length = 562

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     SE +   V ++I   P  R    +I  L R Q+  G +S   I+ +A+ L++  
Sbjct: 21  PKGRQLSEGAFNEVQQLIKDMPLRR--DLLIEYLHRVQDTFGHLSAPHIKALADHLNIGE 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F L   G        ++VC +  C + G ++L +   NK         
Sbjct: 79  AEVYEVASFYAHFDLIKEGQTPPPATTLRVCNSLSCTMAGADELADEL-NK--------- 128

Query: 129 SDGTLSWEEVE-----CQGACVNAPMVMIGKDTYEDLTPERLEEII--DAFST 174
              TL  +EV      C G C  AP V +G++  +  TP +L++ I  +AF+ 
Sbjct: 129 ---TLDNQEVRVLRAPCMGRCNTAPTVALGRNHIDHATPAKLQQAISSNAFTA 178


>gi|116254126|ref|YP_769964.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258774|emb|CAK09880.1| putative NAD-dependent formate dehydrogenase gamma subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 159

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHLLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG ++ E V C G C  AP  M+  + + 
Sbjct: 84  CRAEACQSMGGDALAERVKALLGIDFHQTTPDGGVTLEPVYCLGLCACAPAAMLDGEVHG 143

Query: 159 DLTPERLEEII 169
            +  +R  E++
Sbjct: 144 RVDEQRAAELV 154


>gi|221632799|ref|YP_002522021.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
 gi|221155661|gb|ACM04788.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
          Length = 182

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 32  RYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           RY P   Q A   V+     AQ   GWV   A +++A  L +   RV  + TFY  F+  
Sbjct: 24  RYRPRDHQEAQELVVGACQEAQHLYGWVPPQAAQLIAEHLGVTINRVYGLLTFYADFRTE 83

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-CQGACVNA 147
           P G    + +C    C + G +K+++  R +         SDG L+    + C GAC  A
Sbjct: 84  PPGEH-FLWLCHGAACYIAGSQKVVDALRTEYRLGEDGTTSDGLLTVHVFDGCLGACDLA 142

Query: 148 PMVMIGKDTY-EDLTPERLEEIID 170
           P+  +    Y   L   RL E+++
Sbjct: 143 PVAQLDHHEYIGQLDANRLRELVE 166


>gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 745

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 20/184 (10%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVG 91
           SR +  +I  L   Q++ G +S A +  +A+ + +A+  V E+ATFY  F +    +P  
Sbjct: 222 SRRRDMLIEYLHLIQDKWGQISAAHLAALADEMKLAFAEVFEVATFYAHFDVVKEGAPDI 281

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               ++VC +  C + G E L++  +NK         +   +      C G C  AP   
Sbjct: 282 APVTIRVCDSLTCAMLGAETLMKELKNK---------AGPGVRVVRAPCVGRCDTAPAAE 332

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
           +G +  +  T   ++ ++ A    Q DT    P      S  A G  +LL  NS + GK 
Sbjct: 333 VGHNFVDHAT---VDNVLAALK--QHDTHVHVPDYVEYESYIAQGGYTLL--NSLRSGKT 385

Query: 212 KKDD 215
            K+D
Sbjct: 386 SKED 389


>gi|225570604|ref|ZP_03779629.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
           15053]
 gi|225160617|gb|EEG73236.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
           15053]
          Length = 157

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
            +++IP++   Q +  ++    +  VA  L +   +   +ATFY  F   P G    ++V
Sbjct: 21  HASLIPIIQDIQSEYRYLPPELLSYVAGKLGITEAKAYSVATFYENFSFEPKGKYV-IKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    ++E   +++        +D  L + E V C GAC  AP++ +    Y
Sbjct: 80  CDGTACHVRKSIPILERLYSELGLSKEKVTTDDMLFTLETVSCLGACGLAPVLTVNDKVY 139

Query: 158 EDLTPERLEEII 169
             +TP+   E+I
Sbjct: 140 PAMTPDAAAELI 151


>gi|197301315|ref|ZP_03166400.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
           29176]
 gi|197299633|gb|EDY34148.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
           29176]
          Length = 158

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +++IP++   Q +  ++    +  VA  L +   +   +ATFY  F   P G +  ++VC
Sbjct: 22  ASLIPIIQDIQSEYRYLPPELLRYVAKKLGINEAKAYSVATFYENFSFEPKG-KYIIKVC 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYE 158
             T C +R    ++E   +++        +D  L + E V C GAC  AP++ +    Y 
Sbjct: 81  NGTACHVRKSIPILERLYSELGLSEEKATTDDMLFTLETVSCLGACGLAPVLTVNDKVYP 140

Query: 159 DLTPERLEEII 169
            +TP+   E+I
Sbjct: 141 GMTPDAAAELI 151


>gi|213401477|ref|XP_002171511.1| predicted protein [Schizosaccharomyces japonicus yFS275]
 gi|211999558|gb|EEB05218.1| predicted protein [Schizosaccharomyces japonicus yFS275]
          Length = 163

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           F   S     +++ RYP    Q A +PLL  AQ Q+G +V +AA+  +A++      RV 
Sbjct: 4   FDRRSLEIARQLLRRYPKEWAQGATLPLLDLAQRQQGNFVPQAALREIADMTKSTIARVR 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
             A+ Y   +LS  G+    +VC +  C  +G + L      + H +   +  D  ++ E
Sbjct: 64  ATASQYEYIRLSDSGS--PFRVCTSWMCEEKGAQAL------RKHAQREAKRLDVHINIE 115

Query: 137 EVECQGACVNAPMVMIGKDTYEDLT 161
              C G C +AP++      YE+++
Sbjct: 116 SASCLGGCHHAPVLWFQDRLYENMS 140


>gi|134295065|ref|YP_001118800.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia vietnamiensis G4]
 gi|134138222|gb|ABO53965.1| formate dehydrogenase gamma subunit [Burkholderia vietnamiensis G4]
          Length = 166

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L E       CR +  H      ++   ++ E V 
Sbjct: 67  TAPPA-RVTIQMCRAEACRSMGCEALAEHAQARTGCRFDAAHGDAADPHAPPDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C G C  +P + I    +  +TPE+ + ++
Sbjct: 126 CLGLCAQSPSMTINGVLHAKVTPEKFDALL 155


>gi|218509481|ref|ZP_03507359.1| formate dehydrogenase subunit gamma [Rhizobium etli Brasil 5]
          Length = 159

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++C  
Sbjct: 28  LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G + L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  + Y
Sbjct: 87  EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 142


>gi|146341845|ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS278]
 gi|146194651|emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp.
           ORS278]
          Length = 158

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+ +  S+ + A +P+L   QE  G+V   AI ++A+ L+++   V  + TFY  F+ 
Sbjct: 15  EIIAEH--SQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEVYGVFTFYHDFRG 72

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G R  +++C    C   G + L      K+     +  +D  ++ E + C G C  A
Sbjct: 73  KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLEPIYCLGLCATA 131

Query: 148 PMVMIGKDTYEDLTPERLEEII 169
           P  MI       L   R++ ++
Sbjct: 132 PSAMIDGRLVGRLDEARIDALV 153


>gi|327188942|gb|EGE56134.1| formate dehydrogenase subunit gamma [Rhizobium etli CNPAF512]
          Length = 182

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++C  
Sbjct: 51  LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 109

Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G + L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  + Y
Sbjct: 110 EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVY 165

Query: 158 EDLTPERLEEII 169
             +  +   E++
Sbjct: 166 GRVDDQLATELV 177


>gi|163751849|ref|ZP_02159064.1| ATP synthase subunit E [Shewanella benthica KT99]
 gi|161328265|gb|EDP99427.1| ATP synthase subunit E [Shewanella benthica KT99]
          Length = 178

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q+Q GWVS A + +++  + ++   +  +ATFY       VG    +  C    C L G 
Sbjct: 52  QQQRGWVSDACLSILSAYIHVSIADLDSVATFYNLIFRQAVGEIV-LHPCDGISCDLMGG 110

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            ++      K+H +P     D   +   + C GAC  AP+++  K  Y  LT   + ++I
Sbjct: 111 VEVRAAISQKLHIEPGETTPDKRFTLIPLPCLGACDKAPVMIASKQVYPHLTVRNIAQLI 170

Query: 170 D 170
           D
Sbjct: 171 D 171


>gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 641

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  + Q  ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 75  YNSNEAAGLDEILAKYP--KEQEYLLPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIDS 132

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSW 135
           I + Y  F      + AHV +C    CM++G  +L++  +        H     DG+ + 
Sbjct: 133 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 191

Query: 136 EEVECQGACVN-APMVMIGKD--TYEDLTPERLEEIID 170
             +   G CVN AP +MI +    Y +     LE+ ID
Sbjct: 192 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNID 229


>gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
 gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
          Length = 620

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           V+  L    ++ GW+S  A+  +   L ++   V  +ATFY  F  +P   R  V VC  
Sbjct: 56  VMEALHAVNDRVGWISPGALNYIGKRLSVSAADVYSVATFYGLFSTNPRPKRV-VHVCTD 114

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM---IGKDTYE 158
             CM RG ++L      K+        +     W+   C G C  AP  +    G   +E
Sbjct: 115 IACMARGSKELCASLEKKLGP------ASAMTGWKHSPCLGVCERAPAALAVEAGDPPHE 168

Query: 159 DLT-PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
            L  P  ++E++ A + G        P I  +  A   GL  L
Sbjct: 169 HLIGPATMDEVVLALNDGPEALAAEAPPIMAVPQAGQDGLMLL 211


>gi|325262542|ref|ZP_08129279.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
 gi|324032374|gb|EGB93652.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
          Length = 157

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+++IP++   Q +  ++    +  VA  L +   +   +ATFY  F   P G +  ++V
Sbjct: 21  QASLIPIIQDIQTEYRYLPPELLSYVAGKLGINEAKAYSVATFYENFSFEPKG-KYIIKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    +++   +++        +D  L + E V C GAC  AP++ +    Y
Sbjct: 80  CDGTACHVRKSIPILDRLYSELGLSKEKATTDDMLFTLETVSCLGACGLAPVLTVNDKVY 139

Query: 158 EDLTPERLEEII 169
             +TP+   ++I
Sbjct: 140 PAMTPDTAADLI 151


>gi|107022111|ref|YP_620438.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia
           cenocepacia AU 1054]
 gi|116689056|ref|YP_834679.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia HI2424]
 gi|105892300|gb|ABF75465.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647145|gb|ABK07786.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia
           HI2424]
          Length = 166

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A +L+++   V  + T+Y  F+ +P   RA 
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKVLNLSRAEVHGVLTYYHHFRTAPPA-RAT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H       +   ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155


>gi|150018924|ref|YP_001311178.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905389|gb|ABR36222.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 164

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++ +I ++   Q++  ++   A+  +A  L ++  +V  +ATFY  F L P G +  +++
Sbjct: 23  KTQIITIMQEIQKEYRYLPEEALCYIAKELKISEAKVYGVATFYENFSLEPKG-KYVIRI 81

Query: 99  CGTTPCMLRGCEKLIEVCRNK--IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           C  T C +R  + ++   +++  + +K L  + D   + E V C GAC  AP+  +    
Sbjct: 82  CDGTACHVRKSDPILSEFKSELGLSEKKLTTD-DMHFTVETVSCLGACGLAPVCTVNDVV 140

Query: 157 YEDLTPERLEEII 169
           Y  +TPE+  +++
Sbjct: 141 YPSMTPEKARKLV 153


>gi|269926645|ref|YP_003323268.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790305|gb|ACZ42446.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 174

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 2/156 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +++ SEE    VN ++  +       ++IP L + Q    ++   A  +++    +    
Sbjct: 7   TWTGSEEDRARVNSILDEFEGQDPMESLIPALHKIQAAYRYIPEEAGHIISERWHIPETD 66

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  + +FY+ F   P G R  + +C    C   G  +L EV ++ +         DG  +
Sbjct: 67  IFNVVSFYSDFSTEPRGKRV-LWICEGAACYFMGGPQLGEVAQSVLGIPYNETTPDGEWT 125

Query: 135 WEEVE-CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
               + C G C  AP+V +    Y  L+PE L  +I
Sbjct: 126 LRRADFCFGVCHRAPLVELDHHIYGPLSPEELRALI 161


>gi|116750138|ref|YP_846825.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699202|gb|ABK18390.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 190

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+I +L  AQE  G+++   +   A  L + +  V  +ATFY  F L P G  + + V
Sbjct: 36  QDALIEVLTSAQEAFGYLTEDVLIYTARQLKLPFSWVYGVATFYHFFSLKPQGEHSCI-V 94

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +    +++E    + + K      DG L+     C G C  AP+ ++      
Sbjct: 95  CLGTACYVGKSNEIVEALEKEFNVKAGQTTEDGKLTVTTTRCLGCCGLAPVAVLDNQVLG 154

Query: 159 DLTPE 163
              PE
Sbjct: 155 KELPE 159


>gi|254252941|ref|ZP_04946259.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           dolosa AUO158]
 gi|124895550|gb|EAY69430.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           dolosa AUO158]
          Length = 166

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q++ G+V +  +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDEAGYVPQGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H      ++   ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCEALAAHAEARTGCRFDAGHGDAASAHARADVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGALHAKVTPEKFDALL 155


>gi|307544489|ref|YP_003896968.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
 gi|307216513|emb|CBV41783.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
          Length = 163

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q++ G+V  AA+ ++A  L++    V  + +FY  F+ S  G+   V++C 
Sbjct: 25  ALLPILHAIQDRVGFVPDAAVPIIAESLNLTRAEVHGVISFYHHFRTSRPGSHV-VRICR 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G   L    ++ +         D  ++ E V C G C   P + +    +  +
Sbjct: 84  AEACQAMGARALEAHAKSSLEVDYHQTTRDQEITLEAVYCLGNCACGPSICVDDRVHGRV 143

Query: 161 TPERLEEIIDAFST 174
           T E  + ++D   T
Sbjct: 144 TTETFDRLVDDLRT 157


>gi|163846759|ref|YP_001634803.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524573|ref|YP_002569044.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
           Y-400-fl]
 gi|163668048|gb|ABY34414.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448452|gb|ACM52718.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
           Y-400-fl]
          Length = 173

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I +L +AQE  G++S   +  VA  L +   RV  +ATFY  F L+P G  +   VC 
Sbjct: 38  ALIEVLHKAQELYGFLSPELLGEVARRLKLPPSRVYGVATFYHFFSLAPQGEHS-CTVCL 96

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            T C +RG   L+         +    ++DG  S     C GAC  AP V++
Sbjct: 97  GTACYVRGAAILLRELEALSGVQAGRTSADGRFSLLTARCLGACGIAPAVVL 148


>gi|225026579|ref|ZP_03715771.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
 gi|224956071|gb|EEG37280.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
          Length = 158

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++++IP++   Q +  ++    +  VA+ + +   +   +ATFY  F   P G +  ++V
Sbjct: 21  EASLIPIIQDIQSEYRYLPPELLSYVADQIGITEAKAFSVATFYENFSFEPKG-KYVIKV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           C  T C +R    ++E   +++   K      D   + E V C GAC  AP++ +    Y
Sbjct: 80  CDGTACHVRKSTTILERIYSELGLSKDKVTTEDMLFTVETVSCLGACGLAPVLTVNDKVY 139

Query: 158 EDLTPERLEEII 169
             +TP+   +++
Sbjct: 140 PSMTPDDAAQLL 151


>gi|148254530|ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1]
 gi|146406703|gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+ +  S+ + A +P+L   QE  G+V   AI ++A  L+++   V  + TFY  F+ 
Sbjct: 15  EIIAEH--SKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEVYGVFTFYHDFRA 72

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G R  +++C    C   G + L      K+     +  +D  ++ E + C G C  A
Sbjct: 73  KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLEPIYCLGLCATA 131

Query: 148 PMVMIGKDTYEDLTPERLEEII 169
           P  M+       L   R++ ++
Sbjct: 132 PSAMLDGRLVGRLDEARIDALV 153


>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 1198

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  R    ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 632 YNPNEAAGLDEILAKYPKER--EYLLPIIIEEHDKKGYISDPSIVKISEYLGMYPAQIDS 689

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSW 135
           I + Y  F      + AHV +C    CM++G  +L++  +        H     DG+ + 
Sbjct: 690 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 748

Query: 136 EEVECQGACVN-APMVMIGKD--TYEDLTPERLEEIID 170
             +   G CVN AP +MI +    Y +     LE+ ID
Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNID 786


>gi|226227789|ref|YP_002761895.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090980|dbj|BAH39425.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 166

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L + Q   G+VS+ A+  +A   +++   V  + TFYT  + +PVG    +Q+C  
Sbjct: 26  LLPVLQQVQATVGFVSQDAMRQIAQAFNISRADVYGVVTFYTDLREAPVGQYV-MQLCMA 84

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   GC +L     + +        +D  +  E   C G C   P + I       +T
Sbjct: 85  EACQSVGCRELAAHATHVLGVPLGQTTADHRIHLEAAYCFGNCALGPTMRIDDRIVGGVT 144

Query: 162 PERLEEII 169
           P R +E++
Sbjct: 145 PARFDELL 152


>gi|114328596|ref|YP_745753.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316770|gb|ABI62830.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Granulibacter bethesdensis CGDNIH1]
          Length = 159

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   Q + G+V    + ++A+ L+++   V  + +FY  F+  P G R  +++
Sbjct: 26  EGAMLPILHDLQAEFGYVPEEVVPMLADALNVSRAEVHGVISFYHDFKNHPPG-RHVLKL 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L +  R K+         +G+++ E V C G C  AP  M+  + + 
Sbjct: 85  CRAEACQAMGADTLADHVREKLRVDWHGTTVNGSVTLEPVFCLGLCACAPAAMLDNELHG 144

Query: 159 DLTPERLEEIIDAFS 173
            L  + ++ ++++ +
Sbjct: 145 RLDQDHVDTLLESVA 159


>gi|114566321|ref|YP_753475.1| NADH dehydrogenase I subunit E [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337256|gb|ABI68104.1| NADH dehydrogenase I chain E [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           ++I+ Y   +    +I      Q +  ++ + A+   A +  ++  +   +ATFY+   +
Sbjct: 6   DIIANYKDKK--GGIIEAYHALQREFNYIPQKAVAEAARVFGVSEAQAYGVATFYSYLSV 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G +  +++C + PC + G +K+++   + +  K     +DG  + E  EC G C   
Sbjct: 64  EKRG-KYIIRMCESAPCHVAGADKVLKAMEDYLGIKVGETTADGKFTLELCECVGQCQAT 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++ +      +++ E++ EI+ A+
Sbjct: 123 PVITVNSQPVFNVSSEKIPEILSAY 147


>gi|71280406|ref|YP_268784.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
 gi|71146146|gb|AAZ26619.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
           34H]
          Length = 168

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q    ++ + AI +VA  L      +  + TFY  FQL+  G R  +++C 
Sbjct: 27  ALLPILHDIQHHFDYIPKKAIAIVAQGLQQTEAEIYGVITFYAHFQLNKPG-RHIIEICR 85

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G + L +  ++++         D   + E V C G C  +P + +  + Y  +
Sbjct: 86  GEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLEPVYCLGNCACSPSIKVADNVYGRM 145

Query: 161 TPERLEEIIDAFS 173
             E+  ++ +  S
Sbjct: 146 NSEKFAKLSEQLS 158


>gi|160893747|ref|ZP_02074531.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
 gi|156864732|gb|EDO58163.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
          Length = 160

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP++   Q +  ++    +  VA+ L++   +   +ATFY  F     G +  ++VC  
Sbjct: 24  LIPIIQDIQSEYKYLPPELLRYVADKLNITEAKAYSVATFYENFSFDAKG-KFILKVCDG 82

Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C +R    ++     ++   K  H   D   + E V C GAC  AP++ +    +  +
Sbjct: 83  TACHVRKSMDILNQLYKELGLSKEKHTTDDMMFTLETVSCLGACGLAPVMTVNDVVHPAM 142

Query: 161 TPERLEEIIDAFSTG 175
           TPE++  +I     G
Sbjct: 143 TPEKVTALIAELKEG 157


>gi|119475814|ref|ZP_01616166.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
 gi|119450441|gb|EAW31675.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
          Length = 200

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   Q + G +    +  +A++ +++   V  + +FY  F+ +P G R  +Q+
Sbjct: 60  EGALLPVLHSIQTEFGHIPPDCVGQIADLFNVSAAEVHGVLSFYPFFRSTPPG-RHTIQI 118

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDTY 157
           C    C   G  +L+E           H+ S DG  + E V C G C  +P + +G   +
Sbjct: 119 CRAEACQSMG-SRLLERHAKLTLGIDFHQTSADGEFTLEPVYCLGNCACSPSIRVGTQIF 177

Query: 158 EDLTPERLEEIIDAFST 174
             +   R + +ID   T
Sbjct: 178 SHVDSARFDALIDDLQT 194


>gi|160936611|ref|ZP_02083978.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440402|gb|EDP18147.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
           BAA-613]
          Length = 164

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 42  VIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           ++ +L   Q   G+  +      +VA  + M   RV +I TFY   +  P   R  ++VC
Sbjct: 26  LLAILYELQNASGYNYIDEETAALVAEEVGMNPTRVYDIITFYAMLKTEP-KARYVLKVC 84

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            +TPC     E++ ++ + ++         DG  ++  + C GAC   P++ +    Y +
Sbjct: 85  NSTPCHFSRSEEIAQILKEELGVGIGETTEDGVFAYHYIPCVGACDIGPVIKVKDTVYGN 144

Query: 160 LTPERLEEIIDAFSTGQ 176
           L   ++ +++    +G+
Sbjct: 145 LDRRKIRQLLADLRSGK 161


>gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 570

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG---- 91
           S  +  +I  L   Q++ G +S A +  +A+ + +++  V E+ATFY  F +   G    
Sbjct: 47  SHRRDMLIEHLHLIQDKWGQISAAHLAALADEMKLSFPEVFEVATFYAHFDVVKEGEPDI 106

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               ++VC +  C + G + L++  +NK         +   +      C G C +AP+  
Sbjct: 107 PPLTIRVCDSLTCAMLGADTLMKELQNK---------AGPEVRVVRAPCVGRCDHAPVAE 157

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
           +G +  ++ TP ++    D     +GDT    P      S  A G  +LL  NS + G+ 
Sbjct: 158 VGHNFIDEATPAKVLAAAD-----EGDTHAHVPDYIEYDSYVAQGGYALL--NSLRSGQT 210

Query: 212 KKDD 215
            K+D
Sbjct: 211 SKED 214


>gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 572

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G  A  
Sbjct: 48  RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAVP 107

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              V+VC +  C + G E L+   + +I          G +      C G C +AP   +
Sbjct: 108 ALTVRVCDSLTCAMHGAEALLATLQAEI---------GGPVRVVRAPCVGLCDHAPAAEV 158

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200
           G +     TPER++  + A     GDT    P  +D  +   AGG  +L
Sbjct: 159 GHNFLPRATPERVKAAVAA-----GDTHPHIPDYVDYDAYRAAGGYRTL 202


>gi|114705204|ref|ZP_01438112.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539989|gb|EAU43109.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
           HTCC2506]
          Length = 157

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F E+ AI + E          +  ++P+L     + G++   A+ ++A  L++    V  
Sbjct: 7   FDEDDAIALVE-----EYKHLEGPLLPILHAFSHRYGYIGDEAVRLIAGELNLTRAEVYG 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY  F+  P G R  ++VC    C   G + + +     +  K    ++DG ++ E 
Sbjct: 62  VVSFYHDFKREPHG-RHVLKVCRAEACQAAGGDAIADSLEKALGIKFGETSADGAVTLEA 120

Query: 138 VECQGACVNAPMVMI 152
           V C G C  AP  M+
Sbjct: 121 VYCLGLCATAPSAML 135


>gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 567

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G  A  
Sbjct: 43  RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAVP 102

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              V+VC +  C + G E L+   + +I          G +      C G C +AP   +
Sbjct: 103 ALTVRVCDSLTCAMHGAEALLATLQAEI---------GGPVRVVRAPCVGLCDHAPAAEV 153

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200
           G +     TPER++  + A     GDT    P  +D  +   AGG  +L
Sbjct: 154 GHNFLPRATPERVKAAVAA-----GDTHPHIPDYVDYDAYRAAGGYRTL 197


>gi|147677714|ref|YP_001211929.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273811|dbj|BAF59560.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 192

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +I +L +AQ+  G++       +A  L +    V  + TFY+ F   P G +  + V
Sbjct: 49  KGQLIRILQKAQDIFGYLPDDVQAFIAERLRVPVAEVNGVVTFYSLFSTRPKG-KYIINV 107

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +++++  + ++         DG  + +   C GAC  AP++ +      
Sbjct: 108 CMGTACYVKGAQQVMDALKKRLKIDEGETTPDGLFTLKSTRCVGACGLAPILAVNGKVQG 167

Query: 159 DLTPERLEEIIDAFSTGQ 176
            + P +++E+I     G+
Sbjct: 168 MVDPGKIQELIKNCRKGE 185


>gi|187250941|ref|YP_001875423.1| putative FeFe hydrogenase subunit HydC [Elusimicrobium minutum
           Pei191]
 gi|186971101|gb|ACC98086.1| Putative FeFe hydrogenase subunit HydC (NuoE) [Elusimicrobium
           minutum Pei191]
          Length = 163

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q ++I +L   Q+  G+V R     ++ ++++   ++ E+ +FY  F+L+P   +  + V
Sbjct: 25  QGSLIMILHEIQDTLGYVPREISLELSQLINVPLAQIYEVLSFYHFFKLTP-PAKYRISV 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C L+G  ++I+     +  K   +  D   S   V C G C  AP+V +    + 
Sbjct: 84  CTGTACYLKGAPEIIKEFTRLLGIKEGEQTKDSNFSLTGVRCVGCCGLAPVVSVNGKIFG 143

Query: 159 DLTPERLEEIIDAFSTGQGD 178
            +    ++ I+  +  GQ +
Sbjct: 144 AVKATEVKNIVQEYK-GQNN 162


>gi|302344256|ref|YP_003808785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640869|gb|ADK86191.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 170

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I +L    ++  ++   A+  ++  L ++   + EI TFY+ F L P G R  + VC  
Sbjct: 39  LIMILQAISKRYNYLPLPALRYLSAKLGVSMSGIYEIVTFYSMFCLEPRG-RNIISVCLG 97

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG E++ +   + +  K     +D   + E V C G C   P+V+I +  +  +T
Sbjct: 98  TACHVRGAERIKQSVEDYLGIKAGETTADFKFTLETVRCIGCCSLGPVVVIDEKYHGGMT 157

Query: 162 PERL 165
            +++
Sbjct: 158 SDKM 161


>gi|170740590|ref|YP_001769245.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           sp. 4-46]
 gi|168194864|gb|ACA16811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           sp. 4-46]
          Length = 157

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           ++ + A +P+L   QE+ G+V + A+ ++A+ L+++   V    TFY  F+  P G R  
Sbjct: 20  AQLEGATLPILHALQERFGYVDQGAVALIADALNLSKAEVHGCITFYHDFRAEPAGRRV- 78

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           V++C    C   G + L      +         +DG ++ E V C G C   P  ++
Sbjct: 79  VKLCRAEACQAVGADALHAEILGRYGVGWHGTTADGAVTIEPVFCLGLCACGPAALV 135


>gi|71280180|ref|YP_270680.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
 gi|71145920|gb|AAZ26393.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
           34H]
          Length = 163

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q    ++   A+ ++A  L+++   V  + +FY  F+    G    +++C 
Sbjct: 25  AMLPILHAIQNDLSFIPSNALPLIAKALNVSKAEVHGVISFYHHFRTEEPGAHV-IEICR 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G   L E  +  +       + D   + E V C G C  +P + IG D + +L
Sbjct: 84  GESCQAMGSRALEENIKQNLSIDYHQTSKDRQYTLEPVYCLGNCACSPAMRIGDDIHGEL 143

Query: 161 TPERLEEIIDAFST 174
             ++ E+II + +T
Sbjct: 144 DLQKFEQIIASLNT 157


>gi|260427116|ref|ZP_05781095.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
           SE45]
 gi|260421608|gb|EEX14859.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
           SE45]
          Length = 155

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   QE    V  AA+ ++A  L++    V  + +FY  F+ +P G R  V++C  
Sbjct: 25  LLPILHALQEAYDHVPEAALGMIAETLNLTKAEVHGVMSFYHDFRKAPAG-RHVVKICRA 83

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G   L +    K+        SDG ++ E V C G C  AP  M+         
Sbjct: 84  EACQSMGANALSDAVLEKLGIGWGGTTSDGLVTVEAVYCLGLCACAPAAMVDDRLIARAD 143

Query: 162 PERLEEIID 170
             RLE+ ++
Sbjct: 144 AARLEKALE 152


>gi|225850512|ref|YP_002730746.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Persephonella marina EX-H1]
 gi|225645271|gb|ACO03457.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Persephonella marina EX-H1]
          Length = 162

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A+IP L    ++   +   A+  +A+ L +    +  I +FY  F+      R H+++
Sbjct: 26  QQAIIPSLHDILDKYRDIPDQAVFELADYLKVPPSDIEGIVSFYDMFR-HKKNARNHIRI 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C   PC L   + L+E  +N         + DG    E VEC G+C  AP  +I  D Y+
Sbjct: 85  CRNLPCHLGKYQLLLEKIKNLTGADIGKNSPDGKWYIELVECIGSCAIAPAFLINDDLYD 144


>gi|91975105|ref|YP_567764.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisB5]
 gi|91681561|gb|ABE37863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 156

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 45  LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
           +L   QE  G+V  AA  +VA  L+++   +  + TFY  F+  P G R  +++C    C
Sbjct: 28  ILHALQEAFGYVPEAAEPMVAQALNLSRAEIHGVVTFYPDFRREPPG-RHVLKLCRAEAC 86

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164
              G + L      ++       ++DG +S E V C G C  AP  M+       L   R
Sbjct: 87  QAAGGDALAAQAETRLGVTFGATSADGAVSLEPVYCLGLCATAPSAMLDDRVIGRLDTHR 146

Query: 165 LEEII 169
           L+ ++
Sbjct: 147 LDALM 151


>gi|170698429|ref|ZP_02889502.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria IOP40-10]
 gi|170136682|gb|EDT04937.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria IOP40-10]
          Length = 166

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H      ++ G ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGADAHAPGDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERL 165
            + +    +  +TPE+ 
Sbjct: 135 SMTVNGVLHAKVTPEKF 151


>gi|307292623|ref|ZP_07572469.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306880689|gb|EFN11905.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 155

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R +  ++PLL   QE+ G++  AAI  +A  L+++   V  + TFY  F+ +P G R  
Sbjct: 18  GRTRDRLLPLLHMLQEEIGFIDDAAIPAIAENLNLSRADVHGVVTFYHDFRRAPAG-RHV 76

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+ C    C  RG   + +    ++         DG ++ E + C G C   P  ++   
Sbjct: 77  VKFCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIYCLGLCAIGPNALVDGK 136

Query: 156 TYEDLTPERLEEI 168
               +    LE I
Sbjct: 137 PVARIDQAALERI 149


>gi|254431436|ref|ZP_05045139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
           sp. PCC 7001]
 gi|197625889|gb|EDY38448.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
           sp. PCC 7001]
          Length = 178

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-SPVGTRAHVQVC 99
           A+I +L + QE  G++   A+E VA  L +   RV  +A+FY  F+L +P   R    VC
Sbjct: 31  ALIEVLHQVQELYGYLPPGALEQVARELKLPLARVHGVASFYHLFRLEAPTAHR--CAVC 88

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             T C ++G  +L      ++  +      +G  + E V C GAC  AP++++
Sbjct: 89  LGTACFVKGGGELAARLEQRLGLQLDDPAGNGNWALEHVSCLGACGQAPVLVV 141


>gi|115526638|ref|YP_783549.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisA53]
 gi|115520585|gb|ABJ08569.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 160

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + +L   QE  G+V + AI ++A  L+++   V  + TFY  F+ +P G R  +++
Sbjct: 26  EGATLVILHAMQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYHDFRKAPAG-RHVLKL 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L       +        +DG +S E + C G C  AP  M+      
Sbjct: 85  CHAEACQAAGGDALAARAEKTLGISVGDTRADGVVSLEPIYCLGLCATAPSAMLDGRLIG 144

Query: 159 DLTPERLEEII 169
            LT   L+ ++
Sbjct: 145 RLTEAGLDALL 155


>gi|190893705|ref|YP_001980247.1| formate dehydrogenase, gamma subunit [Rhizobium etli CIAT 652]
 gi|190698984|gb|ACE93069.1| formate dehydrogenase protein, gamma subunit [Rhizobium etli CIAT
           652]
          Length = 159

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++C  
Sbjct: 28  LLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKI----HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G + L E  +  +    HQ  L    DG+++ E V C G C  AP  M+  + +
Sbjct: 87  EACQSMGGDALAERVKALLGIDFHQTTL----DGSVTLEAVYCLGLCACAPSAMLDGEVH 142


>gi|330501360|ref|YP_004378229.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina NK-01]
 gi|328915646|gb|AEB56477.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina NK-01]
          Length = 164

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           P  F+  E+ A    EV++ +   R Q  A++P+L   Q++ G V    + ++A  L ++
Sbjct: 5   PQRFA-PEQCAAVAREVLAAH---RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLS 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  + +FY  F+ +P G R  +++C    C   G + L     +K+         DG
Sbjct: 61  RAEVHGVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTY 157
           +LS+E V C G C  AP VM+  + +
Sbjct: 120 SLSFEPVYCLGNCACAPSVMLNGELH 145


>gi|170693703|ref|ZP_02884861.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           graminis C4D1M]
 gi|170141485|gb|EDT09655.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           graminis C4D1M]
          Length = 161

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 23  AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           AI   E+++R+  P R   +++ +L   Q++ G+V  AA+  +A  ++++   V  + T+
Sbjct: 6   AIAPEELVARHAQPGR---SLLAVLHAIQDELGYVPPAAVPPLARTMNLSRAEVHGVITY 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSW 135
           Y  F+  P      VQ+C    C   G E L +       CR     K     +   +  
Sbjct: 63  YHHFRTQPAAPVT-VQLCRAEACRSMGTEALAQHIESHTGCRFDAEHK-----AGAAVEL 116

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 117 ESVYCLGQCALSPAMMVNGTLHAKITPQKFDAIFAAAS 154


>gi|323526973|ref|YP_004229126.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1001]
 gi|323383975|gb|ADX56066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1001]
          Length = 161

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 23  AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           AI   E+++R+  P R   +++ +L   Q++ G+V  AA+  +A +++++   V  + T+
Sbjct: 6   AIAPEELVARHAQPGR---SLVAVLHAIQDELGYVPPAAVAPLARVMNLSRAEVHGVITY 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLS 134
           Y  F+  P      VQ+C    C   G E L +       CR +  H+      +   + 
Sbjct: 63  YHHFRTQPAAAVT-VQLCRAEACRSMGTEALAQHIESHTGCRFDAAHE------AGAAVE 115

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 116 LESVYCLGQCALSPAMMVNGTLHARVTPQKFDAIFAAAS 154


>gi|87198756|ref|YP_496013.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134437|gb|ABD25179.1| formate dehydrogenase gamma subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 137

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q A++P+L   Q   G VS  AI  VA+ L+++   V  + +FY  F+ SP   RA +++
Sbjct: 15  QGALLPILHDVQAAFGHVSEDAIRAVASALNLSRADVFGVVSFYHDFRQSP-EPRAVLKL 73

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C  RG E L     +  H K            E V C G C   P  M     + 
Sbjct: 74  CRAEACQARGVEALAAQLPDNPHVK-----------IEAVYCLGLCSVGPNAMAEGKVHA 122

Query: 159 DLTPERLEEIIDAFS 173
            L   +L  ++++ +
Sbjct: 123 RLDASKLGALVESLA 137


>gi|294146590|ref|YP_003559256.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
           japonicum UT26S]
 gi|292677007|dbj|BAI98524.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
           japonicum UT26S]
          Length = 155

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R +  ++PLL   QE+ G++   AI+++A  L++    V  + TFY  F+ +P G R  
Sbjct: 18  GRTRDRLLPLLHMLQEEIGFIDGNAIKIIAEKLNLTRADVHGVVTFYHDFRRAPAG-RHV 76

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           V++C    C  RG   + +    ++         DG ++ E + C G C   P  ++
Sbjct: 77  VKLCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIYCLGLCAVGPNALV 133


>gi|90426118|ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisB18]
 gi|90108132|gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 158

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + +L   QE  G+V + AI ++A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 24  EGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYHDFRKVPAG-RHVLKL 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L       +         DG +S E V C G C  AP  M+      
Sbjct: 83  CLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLEPVYCLGLCATAPSAMLDGRLIG 142

Query: 159 DLTPERLEEII 169
            L   RL+ ++
Sbjct: 143 RLDATRLDALL 153


>gi|171316164|ref|ZP_02905388.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MEX-5]
 gi|171098673|gb|EDT43468.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MEX-5]
          Length = 166

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  +Q+C 
Sbjct: 21  SLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIQMCR 79

Query: 101 TTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
              C   GCE L         CR +  H +    ++ G ++ E V C G C  +P + + 
Sbjct: 80  AEACRSMGCETLAAHAEARTGCRFDAAHGEGADAHAPGDVALESVYCLGLCAQSPSMTVN 139

Query: 154 KDTYEDLTPERL 165
              +  +TPE+ 
Sbjct: 140 GVLHAKVTPEKF 151


>gi|121609342|ref|YP_997149.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
           eiseniae EF01-2]
 gi|121553982|gb|ABM58131.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 156

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             ++P+L   Q+  G +   A+ ++A  L+++   V  + TFY  F+  P G +  VQ+C
Sbjct: 22  GGLLPMLHDIQDALGHIPAPALGLIAQELNLSRAEVHGVVTFYHFFRHEPAGKQV-VQIC 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G +KL E   ++++ +     +DG ++ E V C G C ++P +++ +  +  
Sbjct: 81  RAEACQSMGADKLWEHACSRLNTQG-GTTADGAVTLEPVYCLGLCSSSPAMVVDEQLHAR 139

Query: 160 LTPERLEEIIDA 171
           +   + + ++ A
Sbjct: 140 VDTVKFDRLVAA 151


>gi|254469432|ref|ZP_05082837.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
           JE062]
 gi|211961267|gb|EEA96462.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
           JE062]
          Length = 158

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q + G+V   A+  +A+ L+++   V    +FY  F+  P G R  ++VC  
Sbjct: 28  LLPILHDVQAKFGYVPEDALLQIADRLNLSRAEVHGTMSFYHDFRTEPAG-RHVLKVCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
             C   G EKL E  +  +  K      DG ++ E V C G C  AP  M+  + +
Sbjct: 87  EACQSLGGEKLAEDIQRDLGIKWHETTPDGKVTLEPVYCLGLCSCAPAAMMDGNLH 142


>gi|146305427|ref|YP_001185892.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina ymp]
 gi|145573628|gb|ABP83160.1| formate dehydrogenase gamma subunit [Pseudomonas mendocina ymp]
          Length = 164

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 15/140 (10%)

Query: 32  RYPPSRCQS--------------AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           R+ P +C++              A++P+L   Q++ G V    + ++A  L ++   V  
Sbjct: 7   RFAPEQCEAVTREVLAAHRGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVHG 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY  F+ +P G R  +++C    C   G + L     +K+         DG+LS+E 
Sbjct: 67  VVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFEP 125

Query: 138 VECQGACVNAPMVMIGKDTY 157
           V C G C  AP VM+  + +
Sbjct: 126 VYCLGNCACAPSVMLNGELH 145


>gi|220920303|ref|YP_002495604.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           nodulans ORS 2060]
 gi|219944909|gb|ACL55301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           nodulans ORS 2060]
          Length = 157

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +  + A +P+L   QE  G+V   AI ++A+ L+++   V    TFY  F+  P G R  
Sbjct: 20  THLEGATLPILHALQETFGYVDNEAIPLIADALNLSKAEVHGCITFYHDFRAKPAG-RHV 78

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V++C    C   G + L      ++         DG ++ E V C G C   P  +I  +
Sbjct: 79  VKLCRAEACQAVGADALHAEVLRRLEVDWHGTTRDGAVTVEPVFCLGLCACGPAALIDGE 138

Query: 156 TYEDLTPERLEEII 169
               L  + L+  +
Sbjct: 139 PVARLDADGLQAAL 152


>gi|206561320|ref|YP_002232085.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           cenocepacia J2315]
 gi|198037362|emb|CAR53295.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia J2315]
          Length = 166

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q   G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVGRH--ARAGRSLVAILHAIQNDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L         CR +  H      ++   ++ E V 
Sbjct: 67  TAPPA-RVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPHAPDDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQ 176
           C G C  +P + +    +  +TPE+ + ++ DA +  Q
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAVAHTQ 163


>gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
 gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
          Length = 574

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 22/181 (12%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E++   P  R +  +I  L   Q++ G +S A +  +A  L +A   V E+ATFY  F
Sbjct: 47  VQELLGAAP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEELRIAQAEVYEVATFYAHF 104

Query: 86  QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVEC 140
            +   G        ++VC +  C L G ++L         +K L    D   +      C
Sbjct: 105 DVVKEGETPPPALTIRVCDSLSCELAGAQQL---------KKALEDGLDPAKVRVLRAPC 155

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APAGGLTS 199
            G C  AP++ IG +  +  TPE++E  I A      DT    PQ +   + A AGG   
Sbjct: 156 MGRCDTAPVLEIGHNHIDHATPEKVEAAIAA-----DDTHAHVPQYETYDAYAKAGGYQV 210

Query: 200 L 200
           L
Sbjct: 211 L 211


>gi|77463675|ref|YP_353179.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
 gi|126462507|ref|YP_001043621.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
 gi|221639518|ref|YP_002525780.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
 gi|77388093|gb|ABA79278.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104171|gb|ABN76849.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160299|gb|ACM01279.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides KD131]
          Length = 157

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   Q + GWVS   +   A  L +    +  +A+FY+     PVG R  + +
Sbjct: 22  RAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEMEALASFYSLIFRHPVG-RTVILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C    C L G E++ E  + ++        +DG  +   V C G C  AP  ++G+D
Sbjct: 81  CDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTLLNVACLGGCDRAPAAVVGRD 137


>gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 608

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L  AQE  G++  AA+ ++A  + +   RV  +A FY+   L+PVG    +     
Sbjct: 24  LVQILREAQEALGYLPAAALTLIARAVGVPRARVEGVAGFYSFLHLAPVGRYRVLFSDNI 83

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T  ML   + L  +C NK+  +    + DG +S +   C G C   P +++       ++
Sbjct: 84  TDRMLGSGDLLDRLC-NKLWIERGKLSEDGLVSVDTTSCTGMCDQGPALLVNGRAMTRMS 142

Query: 162 PERLEEI 168
            ER++ +
Sbjct: 143 AERIDRL 149


>gi|53720138|ref|YP_109124.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           pseudomallei K96243]
 gi|254295607|ref|ZP_04963065.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           406e]
 gi|52210552|emb|CAH36535.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei K96243]
 gi|157805546|gb|EDO82716.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           406e]
          Length = 171

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV--QV 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV  ++
Sbjct: 35  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP---AHVTIRL 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 92  CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 150

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 151 KMSPARFDALFDA 163


>gi|295677292|ref|YP_003605816.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1002]
 gi|295437135|gb|ADG16305.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1002]
          Length = 161

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 27  NEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++ R+  P R    ++ +L   Q++ G+V  AA+  +A +L+++   V  + T+Y  F
Sbjct: 10  DQLVQRHAQPGR---TLMTVLHAIQDEIGFVPPAAVGPLARVLNLSRAEVHGVITYYHHF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGAC 144
           + +P      VQ+C    C   G E L +        +    + DG T+  E V C G C
Sbjct: 67  RTTPAAPVT-VQLCRAEACRSMGTEALAQHIEAHTGCRFDAGHHDGATVELESVYCLGQC 125

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             +P +M+    +  +TP++ + ++ A S
Sbjct: 126 ALSPAMMLNGTLHARVTPQKFDALLAAAS 154


>gi|167586516|ref|ZP_02378904.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ubonensis Bu]
          Length = 158

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+  P   R  +Q+C  
Sbjct: 22  LVAVLHAIQDEAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTEP-PARVTIQMCRA 80

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   GCE L    + +        +  G ++ E V C G C  +P + +    +  +T
Sbjct: 81  EACRSMGCEALAAHAQART-GCTFDASHAGAVALESVYCLGLCAQSPSMTVNGVLHARVT 139

Query: 162 PERLEEII-DAFSTGQ 176
           PE+ + ++ DA +  Q
Sbjct: 140 PEKFDALLADAVAHAQ 155


>gi|91784826|ref|YP_560032.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           xenovorans LB400]
 gi|91688780|gb|ABE31980.1| formate dehydrogenase gamma subunit [Burkholderia xenovorans LB400]
          Length = 161

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           AI  ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y
Sbjct: 6   AIAPDQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CR-NKIHQKPLHRNSDGTLSW 135
             F+  P   +  VQ+C    C   G E L   IE    CR +  HQ         T+  
Sbjct: 64  HHFRTQP-AAQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHQH------GATVEL 116

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 117 ESVYCLGQCALSPALMLNGTLHARITPQKFDAIFAAAS 154


>gi|319795812|ref|YP_004157452.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Variovorax
           paradoxus EPS]
 gi|315598275|gb|ADU39341.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus EPS]
          Length = 166

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+  G++    +  +A  ++++   V  + T+Y  F+ +P   R  +Q+C 
Sbjct: 32  ALLPILHDVQDALGYIPPHTVTTIAEGVNLSRAEVHGVITYYHHFRSAPAA-RHVIQICR 90

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G + L+     ++       + DG  + E   C G C ++P + I ++ +  +
Sbjct: 91  AEACQSMGADALLAHAELRLGCSAHGHSKDGNFTLEPAFCLGLCASSPAMTINEEPHARM 150

Query: 161 TPERLEEIIDAFST 174
           T    + ++  + +
Sbjct: 151 TTRSFDALVAQYGS 164


>gi|126454394|ref|YP_001067206.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1106a]
 gi|167720686|ref|ZP_02403922.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei DM98]
 gi|167846782|ref|ZP_02472290.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei B7210]
 gi|237813330|ref|YP_002897781.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242316557|ref|ZP_04815573.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106b]
 gi|254195622|ref|ZP_04902049.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           S13]
 gi|126228036|gb|ABN91576.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106a]
 gi|169652368|gb|EDS85061.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           S13]
 gi|237504647|gb|ACQ96965.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242139796|gb|EES26198.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106b]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV +  
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 78  CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 137 KMSPARFDALFDA 149


>gi|260576445|ref|ZP_05844435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
           SW2]
 gi|259021328|gb|EEW24634.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
           SW2]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q   G V + A+ ++A  L+++   V  + +FY  F+ +P G R  +++C  
Sbjct: 26  LLPILHALQAAFGHVPQEALPLIAKNLNLSRAEVHGVMSFYHDFRAAPAG-RHVLKLCRA 84

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G EKL    R  +  +      DG ++ E V C G C  AP  ++       + 
Sbjct: 85  EACQAMGAEKLAAHARTSLGIEWHETTRDGAVTLEPVFCLGLCACAPAALMDGKVVGRVD 144

Query: 162 PERLEEII 169
             R + ++
Sbjct: 145 EARFDALV 152


>gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 257

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P+  S   ++   V  V++R+     +  ++ +L   QE+  W+S   +  VA    +  
Sbjct: 2   PNGNSNGSDTGAVVAAVLARHGSDGTR--LMQILREIQEETEWLSPDILTRVAEGAKLPR 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +A FY  F   P+G+   +     T  M    + +  +C+ K+  KP   + DG 
Sbjct: 60  GQVEGVAGFYHFFHTEPLGSYRVLWSDNITDRMAGNADLMARMCK-KLWLKPGKVSEDGL 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           +S +   C G C   P +++       +T ER+++I+D
Sbjct: 119 VSVDTTSCTGLCDQGPALLVNYRPVTRMTAERVDQIVD 156


>gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodoferax ferrireducens T118]
 gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodoferax ferrireducens T118]
          Length = 603

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S  +A  +  +++RYPP     A++ +L   Q  +GW++  A+  VA+ L +   +V  +
Sbjct: 8   SLAAAPELQRLLARYPPD--PHALLQILRELQALQGWLAPDALGQVASELGLTLAQVQGV 65

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           A FY      PVG    V         L G E L+     ++   P   + DG +S E  
Sbjct: 66  AGFYRFLHTRPVGAY-RVLFSDNVTDRLLGSEALLADLCQRLGVVPGQLSFDGLVSVERT 124

Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIID 170
            C G C   P ++I        L P R+  + +
Sbjct: 125 SCTGLCDQGPALLINHHQVLTRLDPARVAHMAE 157


>gi|170732344|ref|YP_001764291.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia MC0-3]
 gi|254246010|ref|ZP_04939331.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia PC184]
 gi|124870786|gb|EAY62502.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia PC184]
 gi|169815586|gb|ACA90169.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia MC0-3]
          Length = 166

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H       +   ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPDDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155


>gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 567

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 28/215 (13%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    F++E+   +  ++   P  R +  +I  L   Q++ G +S   I  +A  + +  
Sbjct: 27  PKGRQFTDEAQAEILRLLGDRP--RRRDLLIEFLHLIQDEHGHISADHIAALATEMRIGQ 84

Query: 73  IRVLEIATFYTQFQL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             + E ATFY  F +        P  T   ++VC +  C + G ++L         QK L
Sbjct: 85  AEIYETATFYAHFDVVKEDETPPPALT---IRVCDSLSCEMAGAQQL---------QKAL 132

Query: 126 HRNSD-GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               D   +      C G C  AP++ IG +  +  TPE+++  I A      DT    P
Sbjct: 133 EDGLDPAAVRVVRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHLP 187

Query: 185 QIDRISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218
             +  ++  A GG T L +       +K +DD +S
Sbjct: 188 DYETYAAFTANGGYTKLKELRDGGDWEKVQDDILS 222


>gi|218260382|ref|ZP_03475731.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224553|gb|EEC97203.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 92

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           ++P G +  + VC  T C +RG EK+++  + ++  K      DG  S + + C GAC  
Sbjct: 2   MTPKG-KYPISVCLGTACYVRGAEKVLDEFQRQLEIKVGETTPDGLFSLDCLRCVGACGL 60

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172
           AP+V I    Y  LTPE++ +I+  +
Sbjct: 61  APVVTIAGKVYGRLTPEKVRDILSEY 86


>gi|160878250|ref|YP_001557218.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160426916|gb|ABX40479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 161

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S VI ++   Q+   ++    +  +A  L ++  ++  +ATFY  F L P G    +++
Sbjct: 21  KSHVIAIMQEVQKVYRYLPEEVLCYIAEKLKLSEAKIYGVATFYENFSLEPKGKYV-IKI 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C  T C +R    ++E  R  +    + P     D   + E V C GAC  AP+  +   
Sbjct: 80  CDGTACHVRKSIPILEEFRKVLGVTEKNP--TTDDMIFTVETVSCLGACGLAPVCTVNDV 137

Query: 156 TYEDLTPERLEEIID 170
            +  +TPE+ + +I+
Sbjct: 138 VHAAMTPEKAKALIE 152


>gi|146277731|ref|YP_001167890.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
 gi|145555972|gb|ABP70585.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   Q + GWVS   +   A+ L +    +  +A+FY+     PVG +  + +
Sbjct: 22  RAAMLEALKLIQHEHGWVSDGHLAEAASALGVHRAEMEALASFYSLIFRHPVG-KTVILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C    C L G E++ E  + ++         DG  +   V C G C  AP  ++G+D
Sbjct: 81  CDGASCWLNGAEEVREELKRRLGIGFGETTRDGRYTLLNVACLGGCDRAPAAVVGRD 137


>gi|167903756|ref|ZP_02490961.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei NCTC 13177]
          Length = 146

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV--QV 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV  ++
Sbjct: 10  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP---AHVTIRL 66

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 67  CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 125

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 126 KMSPARFDALFDA 138


>gi|254181074|ref|ZP_04887672.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1655]
 gi|184211613|gb|EDU08656.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1655]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV +  
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 78  CRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 137 KMSPARFDALFDA 149


>gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 565

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++S+Y   R  ++++P+L     + G +   A++ +A ++D+    V  +ATFY   +  
Sbjct: 16  LVSKYGNDR--ASILPVLEDISREYGEIDLYAMQTLAFLVDIHPSEVFGVATFYNFLKSG 73

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
               +  +++C T  C ++  +++ +   N++  +     SDG  S E   C G C   P
Sbjct: 74  KKHGKYVIRLCRTISCHMKEKDRIAKQLNNELEIEFGEITSDGLFSLEYCNCLGMCDQGP 133

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
            ++I       + P  +  II +   G
Sbjct: 134 AMLINDILISKVKPSDIPLIIQSCRRG 160


>gi|222150020|ref|YP_002550977.1| formate dehydrogenase subunit gamma [Agrobacterium vitis S4]
 gi|221737002|gb|ACM37965.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
          Length = 159

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q   G V  +A  V+A  L+++   V  + +FY  F+  P G R  +++
Sbjct: 25  EGPLLPILHEIQRTFGCVPDSAKPVIARALNLSRAEVHGVVSFYHDFRDHPSG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L E  + ++        +DG ++ E V C G C  AP  M+  + + 
Sbjct: 84  CRAEACQSLGGEPLGETIKARLGIDWHETTADGAVTLEPVFCLGLCACAPAAMLDGELHG 143

Query: 159 DLTPERLEEII 169
            L    L++++
Sbjct: 144 RLDEHCLDDLL 154


>gi|53724802|ref|YP_102257.1| formate dehydrogenase subunit gamma [Burkholderia mallei ATCC
           23344]
 gi|67642931|ref|ZP_00441682.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei GB8 horse 4]
 gi|76809699|ref|YP_334388.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 1710b]
 gi|121599593|ref|YP_993893.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
 gi|124386153|ref|YP_001026954.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
           10229]
 gi|126441142|ref|YP_001059918.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           668]
 gi|126449103|ref|YP_001079758.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
           10247]
 gi|134277771|ref|ZP_01764486.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           305]
 gi|166999709|ref|ZP_02265543.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei PRL-20]
 gi|167739671|ref|ZP_02412445.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 14]
 gi|167830054|ref|ZP_02461525.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 9]
 gi|167912019|ref|ZP_02499110.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 112]
 gi|217420553|ref|ZP_03452058.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           576]
 gi|226197898|ref|ZP_03793472.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|254177027|ref|ZP_04883684.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|254192273|ref|ZP_04898762.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254203942|ref|ZP_04910302.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
 gi|254208922|ref|ZP_04915270.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
 gi|254262013|ref|ZP_04953067.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1710a]
 gi|254360023|ref|ZP_04976293.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
           2002721280]
 gi|52428225|gb|AAU48818.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           23344]
 gi|76579152|gb|ABA48627.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 1710b]
 gi|121228403|gb|ABM50921.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
 gi|124294173|gb|ABN03442.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei NCTC 10229]
 gi|126220635|gb|ABN84141.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           668]
 gi|126241973|gb|ABO05066.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei NCTC 10247]
 gi|134251421|gb|EBA51500.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           305]
 gi|147745454|gb|EDK52534.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
 gi|147750798|gb|EDK57867.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
 gi|148029263|gb|EDK87168.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
           2002721280]
 gi|157987468|gb|EDO95244.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698068|gb|EDP88038.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|217395965|gb|EEC35982.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           576]
 gi|225930086|gb|EEH26099.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|238524151|gb|EEP87586.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064207|gb|EES46393.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei PRL-20]
 gi|254220702|gb|EET10086.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1710a]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV +  
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 78  CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 137 KMSPARFDALFDA 149


>gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
 gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
          Length = 603

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           W+++++ R+   R  + ++ +L   QE  G + + A+ V+A  L +   R+  +A+FY+ 
Sbjct: 16  WLDKLVMRH--GRDATRLLQILREIQESFGHIPQQAVSVLAAKLSIPRSRIESVASFYSF 73

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
             L P G    +     T  ML G + L++     +  +P   + DG +S     C G C
Sbjct: 74  LHLKPHGEYRVLFSDNITDRML-GSQDLMDQMCQLLWLQPGKVSEDGLVSIGTTSCTGMC 132

Query: 145 VNAPMVMIGKDTYEDLTPERLEEI 168
              P +++       +T +R++EI
Sbjct: 133 DQGPALLVNGRAITRMTHQRVQEI 156


>gi|167895369|ref|ZP_02482771.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 7894]
 gi|167919994|ref|ZP_02507085.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei BCC215]
          Length = 157

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV +  
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + + 
Sbjct: 78  CRAEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHA 136

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 137 KMSPARFDALFDA 149


>gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
 gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
          Length = 565

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 14/166 (8%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     ++++   + EV+   P  R +  +I  L   Q++ G +S A +  +A  + ++ 
Sbjct: 25  PKGRQVTDQAWAELREVLGDRP--RRRDLLIEFLHLIQDRYGHLSAAHLRALAEEMRLSQ 82

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F +   G        ++VC +  C L G + L     + +        
Sbjct: 83  AEVYEVASFYAHFDVVKEGESPPPALTIRVCDSLSCELAGAQALKSALEDGL-------- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             G +      C G C  AP++ +G +  +  TPE++++ I A  T
Sbjct: 135 DPGQVRVLRAPCMGRCATAPVLELGHNHIDHATPEKVQQAIAANHT 180


>gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 626

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L   Q++   ++ A ++ +A    +  I V  +A+FY+   L P G R  +++C  
Sbjct: 40  MLDILREVQDRFQCIAPATMDQIAEETGLTRIEVEGVASFYSFLSLQPKG-RITIRLCDD 98

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
                 G E +     + +  K    ++DG +S E   C G C  AP  M+      +LT
Sbjct: 99  IVDRYAGLEAVTAAFEDALGIKIGETSADGAVSLEYTPCIGMCDQAPAAMVNDIVLTNLT 158

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQI-DRISS-APAGGLTSLLDNNSKKRG 209
            +   E+ +A   G+    RP   + DR ++ +P      ++DNN +  G
Sbjct: 159 AQSAREVAEAIIAGK----RPEDLVSDRFATLSPHDRAVRMVDNNIRHAG 204


>gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
 gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
          Length = 609

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ +++RY   R    ++ +L+  QE EG++S +++ V+A+ L+++ + V E  +FY   
Sbjct: 5   VDAIMARYLHRR--ERLLDMLIALQETEGYISDSSVNVLASGLNLSPLDVRETISFYHFL 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + +  T    ++G E++       I         +G     + +C G   
Sbjct: 63  HDQPAGKHT-IYLADTVIARMKGYEEVKAALEEAIGCAFGEVTENGEFGLYDTQCIGLSD 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
             P +++    +  LTP++++ ++ A   G
Sbjct: 122 QEPAMLVDGIPFTHLTPDKVQTLVVALKAG 151


>gi|332529345|ref|ZP_08405306.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
           gracilis ATCC 19624]
 gi|332041143|gb|EGI77508.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
           gracilis ATCC 19624]
          Length = 160

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+Q G++    +  +A  L+++   V  + T+Y  F+  P    A VQVC 
Sbjct: 34  ALLPILHDIQDQLGYIPADVVVDIAEALNVSRAEVHGVITYYHHFRSEP-ARGAVVQVCR 92

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L E    K         +   ++ E V C G C  AP V I    +  +
Sbjct: 93  AEACQSCGSEALWEHASKKA--------AGQNVTLEPVYCLGLCATAPAVQIQDKFHARV 144

Query: 161 TPERLEEII 169
           TP + + ++
Sbjct: 145 TPTKFDRLL 153


>gi|325523855|gb|EGD02082.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia sp. TJI49]
          Length = 162

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+  P   R  +Q+C 
Sbjct: 21  SLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTVP-PARVTIQMCR 79

Query: 101 TTPCMLRGCEKLIEV--CRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTY 157
              C   GCE L E    R        H  SD   ++ E V C G C  +P + +    +
Sbjct: 80  AEACRSMGCEALAEHAEARTGCRFDAAHDASDPQAVALESVYCLGLCAQSPSMTVNGVLH 139

Query: 158 EDLTPERLEEII 169
             +TP++ + ++
Sbjct: 140 AKVTPQKFDALL 151


>gi|163760123|ref|ZP_02167206.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
 gi|162282522|gb|EDQ32810.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
          Length = 159

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L   QE  G V ++A+ V+A  L+++   V  + +FY  ++ +P G R  +++C  
Sbjct: 28  LLTILHDVQEAFGHVPQSALPVIAEGLNLSRAEVHGVVSFYHDYREAPAG-RHVIKLCRA 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G ++L E     +       ++DG ++ E V C G C  AP  M+  +    L 
Sbjct: 87  EACQSMGGDELAERLMGLLGLDWHETSADGAVTLEPVYCLGLCACAPAAMVDGEVLGRLD 146

Query: 162 PERLEEI 168
            + + E+
Sbjct: 147 ADAVSEL 153


>gi|332558531|ref|ZP_08412853.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
 gi|332276243|gb|EGJ21558.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
          Length = 157

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   Q + GWVS   +   A  L +    +  +A+FY+     PVG +  + +
Sbjct: 22  RAAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEMEALASFYSLIFRHPVG-KTVILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           C    C L G E++ E  + ++        +DG  +   V C G C  AP  ++G+D
Sbjct: 81  CDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTLLNVACLGGCDRAPAAVVGRD 137


>gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 561

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 26/173 (15%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R    +I  L   Q+  G +S A +  +A  L ++   V E+ATFY  F +   G     
Sbjct: 43  RRSDLLIEFLHLIQDAYGHLSAAHLRALAEELRLSMAEVYEVATFYAHFDVVKEGETPPP 102

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----CQGACVNA 147
              ++VC +  C L G + L                 +G+L   EV      C G C  A
Sbjct: 103 ALTIRVCDSLSCELAGAQALKSAL-------------EGSLDASEVRVLRAPCMGRCDTA 149

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           P++ +G    +  TPE++E  I A  T   D   P  + D  +   AGG TSL
Sbjct: 150 PVLELGHHHIDHATPEKVEAAIAANHT-HADI--PAYE-DFAAYEAAGGYTSL 198


>gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
 gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
          Length = 568

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 22/189 (11%)

Query: 21  ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           E   W  V  ++   P  R +  +I  L R Q+Q G +S A +  +A  + ++   V E+
Sbjct: 30  EDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDQFGHLSAAHLRALAEEMRLSQAEVYEV 87

Query: 79  ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           A+FY  F +   G        ++VC +  C L G + L     + +          G + 
Sbjct: 88  ASFYAHFDVIREGETPPPALTIRVCDSLSCELAGAQALKSALEDGV--------DPGQVR 139

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-P 193
                C G C  AP+V +G    +  TPE +   + A     GDT    P+ +   +   
Sbjct: 140 ILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPEYEGFEAYRA 194

Query: 194 AGGLTSLLD 202
           AGG  +L D
Sbjct: 195 AGGYATLAD 203


>gi|316932166|ref|YP_004107148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
 gi|315599880|gb|ADU42415.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
          Length = 156

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            A + +L   QE  G+V + A  ++A  L+++   V  + TFY  F+  P G R  +++C
Sbjct: 23  GATLLMLQALQEAFGYVPQDAEPMIAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKLC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
               C   G + L+     ++        +DG ++ E   C G C  AP  MI +     
Sbjct: 82  RAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMINERVVGR 141

Query: 160 LTPERLEEII 169
           L   +L+ ++
Sbjct: 142 LDAGKLDALL 151


>gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
 gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
          Length = 566

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P  R +  +I  L   Q+  G +S A I  +A  L    
Sbjct: 26  PKGRQLDDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDAYGHLSAAHIRALAEELRTGQ 83

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G  A     ++VC +  C L G E+L         QK L   
Sbjct: 84  AEIYEVASFYAHFDVVREGETAPPALTIRVCDSLSCELAGAEQL---------QKALEDG 134

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            D + +      C G C  AP++ IG +  +  T E++E  I A  T
Sbjct: 135 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAADDT 181


>gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB]
 gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Dechloromonas aromatica RCB]
          Length = 632

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E  A  V+ V++RY   R  + ++ +L   QE   W+S  AI+ +   L +   ++  +
Sbjct: 8   AEAVAGVVDRVVARY--HRDPTCMVQILREVQEVCDWISPEAIDRMQVTLGVPRTKIEGV 65

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           A FY  F   P G    +     T  ML G + +++   N +  +    + DG +S  + 
Sbjct: 66  AGFYAFFYTEPRGKYRVLFSDNITDRML-GSKAMMDRLCNSLWVERGKVSEDGLVSVAQT 124

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
            C G C   P ++I       LT ER++EI
Sbjct: 125 ACTGMCDQGPALLINNYAIAGLTAERIDEI 154


>gi|298492585|ref|YP_003722762.1| NADH dehydrogenase 24 kDa subunit ['Nostoc azollae' 0708]
 gi|298234503|gb|ADI65639.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit ['Nostoc azollae'
           0708]
          Length = 150

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  VI +L RA E  G++    +  +A+ L +    V  +ATFY  F L+P G + +  V
Sbjct: 12  QDTVIEILHRASELFGYLELDLLLYIAHKLKLPPSWVYGVATFYHLFFLAPKG-KHNCVV 70

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G + ++    N    +     S G +      C GAC  A  V+       
Sbjct: 71  CTGTACYVKGSQAILSSLENVTKIRAGETTSYGEIYLMTARCLGACGIASAVVFDGAVLG 130

Query: 159 DLTPERLEE 167
           + TPE + E
Sbjct: 131 NQTPESVCE 139


>gi|296159982|ref|ZP_06842802.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. Ch1-1]
 gi|295889728|gb|EFG69526.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. Ch1-1]
          Length = 161

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           AI  ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y
Sbjct: 6   AIAPDQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSDGTLSWE 136
             F+  P   +  VQ+C    C   G E L   IE    CR     +        T+  E
Sbjct: 64  HHFRTQP-AAQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHE-----HGATVELE 117

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 118 SVYCLGQCALSPALMLNGTLHARVTPQKFDAIFAAAS 154


>gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
 gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
          Length = 576

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V ++I   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E L         QK L   
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEAL---------QKALEDG 144

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            D + +      C G C  AP++ IG +  +  TPE+++  I A  T
Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAADDT 191


>gi|146278887|ref|YP_001169046.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557128|gb|ABP71741.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 157

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+E++  +     +  ++P+L   QE  G V   ++  +A  L+++   V  + +FY  F
Sbjct: 12  VDEILDEH--EGLEGPLLPILHAVQEAFGHVPLESLPRIAERLNLSRAEVHGVMSFYHDF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G R  +++C    C   G ++L E  + ++        +DG ++ E V C G C 
Sbjct: 70  RTRPHG-RHVLKLCRAEACQAMGADRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCA 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            AP  ++       +   RL+ I++
Sbjct: 129 CAPAALVDGRVVGRVDDARLDRILE 153


>gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 576

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V ++I   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E L         QK L   
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEAL---------QKALEDG 144

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            D + +      C G C  AP++ IG +  +  TPE+++  I A  T
Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAADDT 191


>gi|169351258|ref|ZP_02868196.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
 gi|169292320|gb|EDS74453.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
          Length = 163

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+++++   +    +  +L   Q+  G++   A+E ++  +++   +V  + TFY+QF
Sbjct: 12  IDEIVAKHKDEK--GPMKLMLHEIQDSLGYIPFEAMEKISKAINVPVSKVYGVVTFYSQF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + VC  T C + G + ++++       +    + DG  S +   C GAC 
Sbjct: 70  TTEPKGKHV-ISVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACG 128

Query: 146 NAPMVMI 152
            AP+V +
Sbjct: 129 LAPVVSV 135


>gi|90425543|ref|YP_533913.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
 gi|90107557|gb|ABD89594.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 157

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A++  L   Q  EG+VS A +   A++L ++   +  +ATFY+    SPVG    + +
Sbjct: 22  KAAMLEALKLVQAVEGYVSDAHLAEAASVLGVSTAEIDSLATFYSHIFRSPVGETV-ILL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD--T 156
           C    C L G + + +    ++         DG  +   V C G C  AP  ++G D   
Sbjct: 81  CDGLSCYLCGGDAVRDAVMQRLGIGFGETTPDGKFTLINVCCIGGCDVAPAALVGPDRRL 140

Query: 157 YEDLTPERLEEII 169
              L+ + L ++I
Sbjct: 141 VGPLSADDLNQLI 153


>gi|323139482|ref|ZP_08074530.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
           ATCC 49242]
 gi|322395284|gb|EFX97837.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
           ATCC 49242]
          Length = 157

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +   +P+L     + G V  AA+  +A  L++    +  + TFY  F   P G R  +++
Sbjct: 23  EGPALPILHALMAEFGHVPEAAVREMAEALNITRAEMHGVVTFYHDFHREPHG-RHTLKI 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G EK  +    K+  +      DG+L+ E V C G C ++P  +   +   
Sbjct: 82  CRAESCQSMGAEKQAKDFLAKLKLEWGQTTPDGSLTVEPVYCLGLCAHSPSALFDGEPIG 141

Query: 159 DLTPERLEEII 169
            +   +L+EI+
Sbjct: 142 CVDAAKLDEIV 152


>gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s]
           Ferredoxin Involved In The Nadp-Reducing Hydrogenase
           Complex
          Length = 85

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+ 
Sbjct: 9   ISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEK 68

Query: 156 TYEDLTPERLEEII 169
            Y ++TP ++++I+
Sbjct: 69  VYGNVTPGQVKKIL 82


>gi|327243023|gb|AEA41130.1| putative bifurcating [FeFe] hydrogenase subunit 1 [Clostridium
           butyricum]
          Length = 122

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I ++   Q++  ++    +  +A  L ++  ++  +ATFY  F L P G +  +++C  
Sbjct: 1   LIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENFSLKPKG-KYVIKICNG 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-SWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C +R    ++E  RN +        +D  + + E V C GAC  AP+  +  + Y ++
Sbjct: 60  TACHVRKSIPILEEFRNILGLCEEKSTTDDMMFTVETVSCLGACGLAPVCTVNDEVYPNM 119

Query: 161 T 161
           T
Sbjct: 120 T 120


>gi|27378249|ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA
           110]
 gi|27351396|dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110]
          Length = 162

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+ +  +R + A + +L   Q   G+V  AAI +VA  L+++   V  + TFY  F+ 
Sbjct: 19  EIIAEH--ARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRH 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  +++C    C   G + L      ++     +  +D  ++ E + C G C  A
Sbjct: 77  KPAG-RHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYCLGLCATA 135

Query: 148 PMVMIGKDTYEDLTPERLEEII 169
           P  M+       L  +RL+ ++
Sbjct: 136 PSAMLDGRLVGRLDEKRLDALV 157


>gi|119385583|ref|YP_916638.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Paracoccus
           denitrificans PD1222]
 gi|119376178|gb|ABL70942.1| formate dehydrogenase gamma subunit [Paracoccus denitrificans
           PD1222]
          Length = 159

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+I+ +     +  ++P+L   Q + G+V   A  V+A  L M    V  + +FY  F
Sbjct: 14  LDEIIAAHKGR--EGPLLPILHDLQAEWGYVPEEAQPVLAEALGMTRAEVHGVVSFYHDF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G R  +++C    C   G E L +  R  +         DG L+ E V C G C 
Sbjct: 72  RDHPHG-RHVLRLCRAEACQSMGAEALADEVRAALGIDWHETTPDGRLTLEPVFCLGLCA 130

Query: 146 NAPMVMIGK 154
            AP   +G+
Sbjct: 131 CAPSAQMGE 139


>gi|172059964|ref|YP_001807616.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MC40-6]
 gi|171992481|gb|ACB63400.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MC40-6]
          Length = 166

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H      ++ G ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCESLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155


>gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
 gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
          Length = 568

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L + Q+  G +S A +  +A  + M+   + E+ATFY  F +   G        ++
Sbjct: 55  LIEHLHKIQDTHGCLSAAHLRALAEEMRMSMAEIYEVATFYAHFDVVKEGETPPPALTIR 114

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C L G ++L     N ++         G +      C G C  AP++ +G    
Sbjct: 115 VCDSLSCELAGAQELKAALENGLNP--------GEVRVLRAPCMGRCDTAPVLELGHAHI 166

Query: 158 EDLTPERLEEIIDAFST 174
           +  TPE++   I A  T
Sbjct: 167 DHATPEKVTAAIAAGDT 183


>gi|162148251|ref|YP_001602712.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542891|ref|YP_002275120.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786828|emb|CAP56411.1| putative NADH-quinone oxidoreductase chain E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530568|gb|ACI50505.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 164

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L   Q + GWV  A +  ++++  ++   +  +ATF+      PVG R  + +C +  C 
Sbjct: 34  LAAVQARFGWVCDAHLAELSDLTGLSVADLDGVATFFNLIFRRPVG-RHVIMMCDSVSCW 92

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           + G + L     +++  +P     DG ++   + C G C +AP +++ +  + D+    +
Sbjct: 93  IMGRDALCARLCDRLGIRPGQTTPDGAVTLLPIVCLGHCDHAPALLVDRTLHGDVDEAGI 152

Query: 166 EEIID 170
           + I D
Sbjct: 153 DRIAD 157


>gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 616

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           V+  L    ++ GW+S  A+  +   L +A   V  +ATFY  F  +    R  V VC  
Sbjct: 54  VMEALHAVNDRVGWISPGALNYIGKRLGIAAADVYSVATFYAMFSTNMRPKRI-VHVCTD 112

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS-WEEVECQGACVNAPMVM---IGKDTY 157
             CM RG +   EVC +   +K L     G +S W+   C G C  AP  +    G   +
Sbjct: 113 IACMARGSK---EVCADL--EKRL--GPAGAMSGWKHSPCLGVCERAPAALAVEAGDPPH 165

Query: 158 EDLT-PERLEEIIDAFSTG 175
           E L  P   +E++ A + G
Sbjct: 166 EHLIGPATADEVVLALNNG 184


>gi|115350951|ref|YP_772790.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria AMMD]
 gi|115280939|gb|ABI86456.1| formate dehydrogenase gamma subunit [Burkholderia ambifaria AMMD]
          Length = 166

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H      ++ G ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155


>gi|77464659|ref|YP_354163.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides 2.4.1]
 gi|332559553|ref|ZP_08413875.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
 gi|77389077|gb|ABA80262.1| NAD-dependent formate dehydrogenase, gamma subunit (24 kDa)
           [Rhodobacter sphaeroides 2.4.1]
 gi|332277265|gb|EGJ22580.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
          Length = 157

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE  G V   ++  +A  L+++   V  + +FY  F+  P G R  +++
Sbjct: 23  EGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  + ++        +DG ++ E V C G C   P  ++      
Sbjct: 82  CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 141

Query: 159 DLTPERLEEIID 170
            +   RLE I++
Sbjct: 142 RVDEARLERILE 153


>gi|118579912|ref|YP_901162.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118502622|gb|ABK99104.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 169

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 39  QSAVIPLLMRA-QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
           Q A + L+++A Q++  ++    +  V   LD+   +V  + +FY  F L P G    ++
Sbjct: 28  QPARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAHFTLEPRGKYV-IR 86

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMIGKDT 156
           +C  T C  +    ++E    K+        + D   + E V C GAC  AP+++I ++ 
Sbjct: 87  LCDGTACHAKRSIPILEALYAKLGLSSKKVTTPDMLFTVETVTCLGACGLAPVMLINEEV 146

Query: 157 YEDLTPERLEEIID 170
           Y  +TP     +ID
Sbjct: 147 YGRVTPASAVALID 160


>gi|221640573|ref|YP_002526835.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides KD131]
 gi|221161354|gb|ACM02334.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides KD131]
          Length = 155

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE  G V   ++  +A  L+++   V  + +FY  F+  P G R  +++
Sbjct: 21  EGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  + ++        +DG ++ E V C G C   P  ++      
Sbjct: 80  CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 139

Query: 159 DLTPERLEEIID 170
            +   RLE I++
Sbjct: 140 RVDEARLERILE 151


>gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 562

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 20/172 (11%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT---- 92
           R +  +I  L   Q++ G +S A I  +A  +      + E+A+FY  F +   G     
Sbjct: 44  RNRDLLIEFLHLIQDKYGHLSAAHIRALAEEMRTGQAEIYEVASFYAHFDVVKEGEAPPP 103

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACVNAPMVM 151
              ++VC +  C L G ++L         QK L    D + +      C G C  AP++ 
Sbjct: 104 ELTIRVCDSLSCELAGAQQL---------QKALEDGLDASQVRVLRAPCMGRCDTAPVLE 154

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLD 202
           IG +  +  T E++E  I A     GDT    P  +  +   A GG  +L D
Sbjct: 155 IGHNHIDHATVEKVEAAIAA-----GDTHAHIPAYETFADYEAEGGYAALKD 201


>gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 319

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 90/194 (46%), Gaps = 9/194 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + +  ++ ++++YP       ++P+++   +Q+G++S  ++  +A  +     +V 
Sbjct: 74  TYNADESAGLDSILAKYPDH--PQYLLPIVIEETDQKGYISDPSLVKIAKHVHPYPPQVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLS 134
            I + Y  F      +  HV +C    CM++G  K+++  + +     LH   + DG  +
Sbjct: 132 SILSHY-HFFPRKYTSDTHVYLCRCHNCMMKGQSKVMQALKERYGVDNLHSSVSRDGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           +  +   G CVN  P +M+   G D  E LT    + +  +    +G+  +         
Sbjct: 191 FHTMNWLGYCVNDGPAMMVKRRGGDYVEVLTGLTGDGVEQSLKGLKGNVFKWAKNKIVEQ 250

Query: 191 SAPAGGLTSLLDNN 204
           +  A G  SL++NN
Sbjct: 251 TLKAEGRYSLIENN 264


>gi|192289231|ref|YP_001989836.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           TIE-1]
 gi|192282980|gb|ACE99360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 156

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + +L   Q+  G+V   A  ++A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 22  EGATLLMLQALQQAFGYVPPDAEPMIAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L+     ++        +DG ++ E   C G C  AP  MI +    
Sbjct: 81  CRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMINERVVG 140

Query: 159 DLTPERLEEII 169
            L   +L+ ++
Sbjct: 141 RLDAGKLDALL 151


>gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 561

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 27/211 (12%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RRL + + +P      EE    +  ++   P  R    +I  L + Q+  G VS   I  
Sbjct: 14  RRLGKPKGRPVDAHVLEE----IQRLLGAEP--RRADLLIEHLHKIQDHYGHVSARHIAA 67

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNK 119
           +A  + ++   V E+ATFY  F +   G        V+VC +  C + G   L+   ++ 
Sbjct: 68  LAFEMKLSQAEVYEVATFYHHFDVVAEGESPPPPLTVRVCESLSCAMAGAHALMPALKDA 127

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           + +          +  + V C G C +AP+ ++G++  +  TP  +   ++     QG T
Sbjct: 128 LGE---------GVRIQPVPCVGRCQHAPVAVVGQNPVDRATPAAVSAAVE-----QGQT 173

Query: 180 IRPGPQIDRISSA--PAGGLTSLLDNNSKKR 208
           + P P   R  +A    GG     D  S  R
Sbjct: 174 L-PAPAAYRSYAAYQADGGYQLYQDCRSGHR 203


>gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.]
          Length = 561

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++ + P  R +  +I  L   Q+  G +S A +  +A  + ++   V E+ATFY  F
Sbjct: 34  VQDLLGQRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEEMRLSQAEVYEVATFYAHF 91

Query: 86  QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
            +   G        V+VC +  C L G  +L E  +  +  K        ++      C 
Sbjct: 92  DVVKEGETPPPALTVRVCDSLSCELAGAAQLQEALQQGLDPK--------SVRVVRAPCM 143

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C  AP++ +G    +  TPE++   I A  T
Sbjct: 144 GRCDTAPVLELGHHHIDHATPEKVLAAISAGHT 176


>gi|126463499|ref|YP_001044613.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105163|gb|ABN77841.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 157

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE  G V   ++  +A  L+++   V  + +FY  F+  P G R  +++
Sbjct: 23  EGPLLPILNAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVMSFYHDFRTRPHG-RHVLKL 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  + ++        +DG ++ E V C G C   P  ++      
Sbjct: 82  CRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVFCLGLCACGPAALVDGRVVG 141

Query: 159 DLTPERLEEIID 170
            +   RLE I++
Sbjct: 142 RVDEARLERILE 153


>gi|325971422|ref|YP_004247613.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
 gi|324026660|gb|ADY13419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
          Length = 164

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 52  QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK 111
           +  ++S+  + +VA  +++    V  +ATFY  F L P G    + VC  T C  RG + 
Sbjct: 34  EHNYLSKEELILVAKAMEVPLSTVYSVATFYAFFNLKPQGEHV-ITVCRGTACHTRGSKP 92

Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVE-------CQGACVNAPMVMIGKDTYEDLTPER 164
           L++     + Q  L  + +GT + ++V        C G C  AP++ I    +  +T ++
Sbjct: 93  LLQ---QVLKQLNLELDEEGTATTDDVRFTVHTVACFGQCALAPVIAIDSVIHSRVTEQK 149

Query: 165 LEEIIDAF 172
           L +++   
Sbjct: 150 LTQLLQTL 157


>gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
 gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
          Length = 580

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q++ G++S A I  +A  +      + E+A+FY  F +   G     
Sbjct: 62  RDRDLLIEFLHLVQDKFGYISAAHIRALAEEMRTGQAEIFEVASFYAHFDVVKEGENPPP 121

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L G E+L +     +        +   +      C G C  AP++ I
Sbjct: 122 ALTIRVCDSLSCELAGAEQLKKALEEGM--------NPAKVRVLRAPCMGRCDTAPVLEI 173

Query: 153 GKDTYEDLTPERLEEIIDAFST 174
           G +  ++ T E++E  I A  T
Sbjct: 174 GHNHIDNATVEKVEAAIAADDT 195


>gi|224825581|ref|ZP_03698686.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
           nitroferrum 2002]
 gi|224602502|gb|EEG08680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
           nitroferrum 2002]
          Length = 159

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++P+L   Q+  G++   A+  +A  L  +   V  + TFY  F+ +P      +Q+C 
Sbjct: 25  ALLPILHDVQDTLGFIPDWAVADIAKALSQSRAEVHGVITFYHHFRTTPPAQHT-LQICQ 83

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C  RG  +L       +      R++D ++  E V C G C + P + +       +
Sbjct: 84  AEACQARGSRELTAHAEQVLGCSLHGRSADQSIGLEPVYCLGLCSSGPNIQLNDKMVSRV 143

Query: 161 TPERLEEII 169
              +L+ ++
Sbjct: 144 DAAKLDRLL 152


>gi|86747852|ref|YP_484348.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           HaA2]
 gi|86570880|gb|ABD05437.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 156

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 45  LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
           +L   QE  G V  AA  +VA  L+++   V  + TFY  F+ +P G R  +++C    C
Sbjct: 28  ILHALQEAFGHVPAAAEPMVAQALNLSRAEVHGVLTFYPDFRRTPPG-RHVLKLCRAEAC 86

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164
              G + L      ++        +DG ++ E   C G C  AP  M+ +     L   +
Sbjct: 87  QAAGGDALAARAETRLGVTFGATTADGAVTLEPTYCLGLCATAPAAMLNERVIGRLDAGK 146

Query: 165 LEEII 169
           L+ ++
Sbjct: 147 LDALL 151


>gi|237734767|ref|ZP_04565248.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|229382095|gb|EEO32186.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 160

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++E+++++   +    +  +L   Q + G++   A+E ++  + +   +V  + TFY+QF
Sbjct: 9   IDEIVAKHKDEK--GPMKLMLHEIQNELGYIPFEAMEKISETIGVPVSKVYGVVTFYSQF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + VC  T C + G + ++++       +    + DG  S +   C GAC 
Sbjct: 67  TTEPKGKHV-IAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACG 125

Query: 146 NAPMVMI 152
            AP+V +
Sbjct: 126 LAPVVSV 132


>gi|187924995|ref|YP_001896637.1| NAD-dependent formate dehydrogenase, subunit gamma [Burkholderia
           phytofirmans PsJN]
 gi|187716189|gb|ACD17413.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           phytofirmans PsJN]
          Length = 161

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           AI  ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  ++++   V  + T+Y
Sbjct: 6   AIAPDQLVERH--AQPGVSLLAVLHAIQDEVGYVPPAAVAPLARAMNLSRAEVHGVITYY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CR-NKIHQKPLHRNSDGTLSW 135
             F+  P      VQ+C    C   G E L   IE    CR +  HQ         T+  
Sbjct: 64  HHFRTQPPAPVT-VQLCRAEACRSMGTEALAQHIEAHTGCRFDGEHQH------GATVEL 116

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 117 ESVYCLGQCALSPALMLNGTLHARVTPQKFDAIFAAAS 154


>gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
 gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
          Length = 561

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 21  ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           E   W  V +++   P  R +  +I  L   Q++   +S A +  +A  + ++   V E+
Sbjct: 27  EDKAWAEVRDLLGDRP--RRRDLLIEFLHLIQDEYRCLSAAHLRALAEEMRLSMAEVYEV 84

Query: 79  ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           ATFY  F +   G        ++VC +  C L G E+L E   N +            + 
Sbjct: 85  ATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLREALENGM--------DPAQVR 136

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
                C G C  AP++ +G +     TPE++E  I A  T
Sbjct: 137 VMRAPCMGRCDTAPVLELGHNHIGHATPEKVEAAIAAGET 176


>gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
          Length = 581

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 75  VLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
           V E ATFY  FQ+S        RA ++VC    CM++G E L+   R          N+ 
Sbjct: 101 VYETATFYAHFQMSRSDDLAPPRATIRVCDGVVCMIQGAEALLRETRA---------NAP 151

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
             +      C G C  AP  M+G+      TPERL
Sbjct: 152 ADVRVVPAPCMGWCDRAPAAMVGQRHISAATPERL 186


>gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
 gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
          Length = 585

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L R Q++ G +    +  +A  + +A   V E+ATFY  F   P G +A     V+
Sbjct: 57  LIEYLHRLQDEHGALHADHLAALAEAMKLARAEVFEVATFYHHFDFVPAGGKAPPALTVR 116

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C + G  +L     +++  +         +  + V C G C +AP+ ++G+   
Sbjct: 117 VCESLGCAMAGGAELAASLASQLGAE---------VRVQRVPCVGRCDSAPVAVVGQRPV 167

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
                +R+  ++       G+   P P+  R  +  A     L D
Sbjct: 168 LHADADRVAAVVAG-----GERDEPLPEAIRFDAYRAAAGYRLWD 207


>gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 567

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    +S+E+   V  V+   P  R +  +I  L   Q+  G +S   +  +A  + +  
Sbjct: 27  PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDVYGHLSADHLAALAFEMKLGQ 84

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G        ++VC +  C L G E+L       +        
Sbjct: 85  AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCALAGAEQLRAALEEGL-------- 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             G +      C G C  AP++ +G +  +  TPE++   I A  T
Sbjct: 137 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAAGDT 182


>gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
 gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
          Length = 626

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 7/171 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L   Q++   ++ A ++ +A    +  I V  +A+FY+   L+P G R  +++C  
Sbjct: 40  MLDILREVQDRYRCIAPATMDHIAAATGLTRIEVEGVASFYSFLSLTPKG-RVTIRLCDD 98

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
                 G  ++     +++  K    ++DG  S E   C G C  AP  M+       LT
Sbjct: 99  IVDRFSGLSEVACAFEDELGLKVGETSNDGAFSLEYTPCIGMCDQAPAAMVNDIVLTKLT 158

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQI-DRISS-APAGGLTSLLDNNSKKRGK 210
           PE       A   G+     P   I DR  +  P+     ++DNN +  G+
Sbjct: 159 PETARSAAQALKAGR----SPEQLISDRFEALTPSERALHMVDNNIRHAGE 205


>gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium radiotolerans JCM 2831]
          Length = 572

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92
           SR +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G    
Sbjct: 46  SRQRDLLIEHLHLIQDTFGQISAEHLAALADEMALAFAEVFETATFYAHFDVVKEGDAAI 105

Query: 93  -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V+VC +  C + G ++L+E  + ++        +   +      C G C +AP V 
Sbjct: 106 PRLTVRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200
           +G +         +   ++A     GDT    P  +D  +   AGG  +L
Sbjct: 158 VGHNFLHKADLASVRAAVEA-----GDTHAHVPDYVDYDAYRAAGGYATL 202


>gi|148259852|ref|YP_001233979.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|326403220|ref|YP_004283301.1| putative formate dehydrogenase gamma subunit [Acidiphilium
           multivorum AIU301]
 gi|146401533|gb|ABQ30060.1| formate dehydrogenase gamma subunit [Acidiphilium cryptum JF-5]
 gi|325050081|dbj|BAJ80419.1| putative formate dehydrogenase gamma subunit [Acidiphilium
           multivorum AIU301]
          Length = 157

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE  G++ R A  ++A++L++    V  + +FY  F+ +P G R  +++
Sbjct: 24  EGPLLPILHALQENFGFIPREAEPLIADMLNITRAEVHGVISFYHDFRRAPAG-RHVLKL 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C    C   G E       + +  +      DG ++ E V C G C  AP  + 
Sbjct: 83  CRAEACQSMGSEANARRLLDALGLEWGGTTPDGRITVEAVYCLGLCATAPSALF 136


>gi|78065618|ref|YP_368387.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia sp.
           383]
 gi|77966363|gb|ABB07743.1| formate dehydrogenase gamma subunit [Burkholderia sp. 383]
          Length = 166

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDDAGYVPPGCVAPLARALNLSRAEVHGVLTYYHHFRTAPPA-RVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEV------CR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L         CR +  H      ++ G ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCEALAAHAEARTGCRFDAAHGDAADAHAPGDVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SLTVNGVLHARVTPEKFDALL 155


>gi|114566550|ref|YP_753704.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337485|gb|ABI68333.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           ++   AI   A +  ++      IATFY+ F +   G    V++C + PC + G   ++ 
Sbjct: 31  YLPEEAIAEAARVFKLSTAEAYGIATFYSMFSVEARGKNV-VRICESAPCHVAGAADVVA 89

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               ++  K     +DG  + E  EC G C   P++ +    Y D++P ++  II  +
Sbjct: 90  ALERELGIKMGESTADGKFALEFTECVGQCQATPVITVNGKPYLDVSPAQIPAIIAEY 147


>gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 567

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    F++E+   +  ++   P  R +  +I  L   Q+  G +S   I  +A  + +  
Sbjct: 27  PKGRQFTDEAQAEIQRLLGDRP--RRRDLLIEFLHLIQDTHGHISADHIAALAVEMRIGQ 84

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E ATFY  F +   G        ++VC +  C + G ++L         +K L   
Sbjct: 85  AEIYETATFYAHFDVVKEGETPPPALTIRVCDSLSCEMAGAQQL---------KKALEDG 135

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
            D + +      C G C  AP++ IG +  +  TPE+++  I A     GDT    P  +
Sbjct: 136 LDPSEVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----GDTHAHLPDYE 190

Query: 188 RISS-APAGGLTSL 200
             ++    GG T L
Sbjct: 191 TFATYVENGGYTKL 204


>gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Leptothrix cholodnii SP-6]
          Length = 627

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R   A++ +L   Q  + W+ R  + ++A+ L +    V  +A+FY  F + PVG    
Sbjct: 43  GRNPHALVQILREVQAHQTWLPRDTLSLLAHELGLTLAHVEGVASFYRFFHMQPVGEYRL 102

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +     T  ML G E L+     ++  +P    +DG +S     C G C   P +++
Sbjct: 103 LLSDNITDRML-GSEALLADLCQQLRVEPGRMRADGRVSVARSSCTGLCDQGPALLV 158


>gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400]
 gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Burkholderia xenovorans LB400]
          Length = 610

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++ +L  AQ +  W+SR  +  +A  L +    V  +ATFY  F  SP G    +    
Sbjct: 34  ALVQILREAQARHTWLSRELLGYIAGALGLTLAHVEGVATFYRFFHTSPAGEYRVLFSDN 93

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            T  M      L ++CR    Q+   R  DG +S +   C G C   P ++I
Sbjct: 94  ITDRMQGNAALLDDLCRRLGVQRGQMRE-DGRVSVDFCSCTGLCDQGPSLLI 144


>gi|161525534|ref|YP_001580546.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349738|ref|YP_001945366.1| formate dehydrogenase subunit gamma [Burkholderia multivorans ATCC
           17616]
 gi|221213581|ref|ZP_03586555.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD1]
 gi|160342963|gb|ABX16049.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia multivorans ATCC 17616]
 gi|189333760|dbj|BAG42830.1| formate dehydrogenase gamma subunit [Burkholderia multivorans ATCC
           17616]
 gi|221166370|gb|EED98842.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD1]
          Length = 166

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
           +R   +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+ +P   R  
Sbjct: 16  ARAGRSLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVT 74

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAP 148
           +Q+C    C   GCE L E  + +        H    H ++   ++ E V C G C  +P
Sbjct: 75  IQMCRAEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSP 134

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    +  +TPE+ + ++
Sbjct: 135 SMTVNGVLHAKVTPEKFDALL 155


>gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
 gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
          Length = 572

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92
           SR +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G    
Sbjct: 46  SRQRDLLIEHLHLVQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEANI 105

Query: 93  -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V+VC +  C + G + L+E  + ++        +   +      C G C +AP V 
Sbjct: 106 PRLTVRVCDSITCAMFGADALVETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157

Query: 152 IGKD 155
           +G +
Sbjct: 158 VGHN 161


>gi|209519329|ref|ZP_03268128.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. H160]
 gi|209500213|gb|EEA00270.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. H160]
          Length = 161

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 27  NEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++++ R+  P R   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y  F
Sbjct: 10  DQLVQRHAQPGR---SLMTILHAIQDELGYVPPAAVGPLAGALNLSRAEVHGVITYYHHF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144
           + +P      VQ+C    C   G E L +        +    + DG  +  E V C G C
Sbjct: 67  RTTPAAPVT-VQLCRAEACRSMGTEALAQHIETHTGCRFDAGHEDGAKVELESVYCLGQC 125

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
             +P +M+    +  ++P++ + +  A
Sbjct: 126 ALSPAMMLNGTLHARVSPQKFDALFAA 152


>gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
 gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
          Length = 576

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDKFGHLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G ++L         QK L   
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQQL---------QKALEDG 144

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
            D + +      C G C  AP++ IG +  +  T E++E  I A      DT    P  +
Sbjct: 145 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPDYE 199

Query: 188 RISSAPA-GGLTSLLD 202
             ++  A GG  +L D
Sbjct: 200 TFAAYEADGGYATLKD 215


>gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
 gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
          Length = 561

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q+  G +S A +  +A  L +A   + E+ATFY  F +   G     
Sbjct: 43  RRRDLLIEFLHLIQDAYGHLSAAHLRALAEELRVAQAEIYEVATFYAHFDVVKEGETPPP 102

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L G E+L     + +            +      C G C  AP++ +
Sbjct: 103 ALTIRVCDSLACELAGAEQLKSALESGL--------DPAEVRVLRAPCMGRCDTAPVLEL 154

Query: 153 GKDTYEDLTPERLEEII 169
           G +  +  TPE++E  I
Sbjct: 155 GHNHIDHATPEKVEAAI 171


>gi|39933809|ref|NP_946085.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           CGA009]
 gi|39647656|emb|CAE26176.1| putative NAD-dependent formate dehydrogenase gamma subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 156

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + +L   Q+  G+V + A  +VA  L+++   V  + TFY  F+  P G R  +++
Sbjct: 22  EGATLLMLQALQQAFGYVPQDAEPMVAQALNLSRAEVHGVLTFYPDFRREPPG-RHVLKL 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L      ++        +DG ++ E   C G C  AP  M+ +    
Sbjct: 81  CRAEACQAAGGDALAAHAETRLGVTFGATTADGAVTLEPAYCLGLCATAPSAMMNERVVG 140

Query: 159 DLTPERLEEII 169
            L   +L+ ++
Sbjct: 141 RLDAVKLDALL 151


>gi|167755801|ref|ZP_02427928.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
 gi|167704740|gb|EDS19319.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
          Length = 242

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 45  LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
           +L   Q + G++   A+E ++  + +   +V  + TFY+QF   P G    + VC  T C
Sbjct: 108 MLHEIQNELGYIPFEAMEKISETIGVPVSKVYGVVTFYSQFTTEPKGKHV-IAVCLGTAC 166

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
            + G + ++++       +    + DG  S +   C GAC  AP+V +
Sbjct: 167 YVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATRCVGACGLAPVVSV 214


>gi|182677975|ref|YP_001832121.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633858|gb|ACB94632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 157

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+    Q+  G+V   A+ ++A  L+++   V  + TFY  F+  P G    +++
Sbjct: 23  EGATLPIFHALQKAFGYVPAEAVPMIAEALNLSRAEVHGVLTFYHDFRSEPPGCHI-LKL 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L      ++  K      D  ++ E V C G C  AP  M+      
Sbjct: 82  CRAEACQAAGGDHLATGVERQLGIKLGETTPDQQVTLEPVFCLGLCAVAPSAMLDDQPIG 141

Query: 159 DLTPERLEEIID 170
            +   RL+ +++
Sbjct: 142 RVDAARLDALLN 153


>gi|317125323|ref|YP_004099435.1| formate dehydrogenase, subunit gamma [Intrasporangium calvum DSM
           43043]
 gi|315589411|gb|ADU48708.1| formate dehydrogenase, gamma subunit [Intrasporangium calvum DSM
           43043]
          Length = 157

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++ +L  A  + G + R  +E +A++L+++   V  + +FY  F+  P      V +
Sbjct: 30  RGALMVVLHAAVAELGHLERTDVETIADVLNLSVADVHGVVSFYKDFRTDPAPAHT-VHL 88

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E +    R ++     HR+    +  +EV C G C   P  M+    + 
Sbjct: 89  CRGEACQAVGAESVFAQARAQL----AHRDD---VEVDEVFCLGNCALGPSAMVDGRLHG 141

Query: 159 DLTPERL 165
            L+ ERL
Sbjct: 142 RLSGERL 148


>gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium sp. 4-46]
          Length = 572

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G  A  
Sbjct: 48  RRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAFAEVFETATFYAHFDVVKEGEAAIP 107

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              V+VC +  C + G E+L+   + +I  +         +      C G C +AP   +
Sbjct: 108 ALTVRVCDSLTCAMHGAEELLAALQAEIGAQ---------VRVVRAPCVGLCDHAPAAEV 158

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL 200
           G +     T E +   + A     GDT    P  ID  +   AGG  +L
Sbjct: 159 GHNFLHRATVETVRAAVAA-----GDTHAHLPDTIDFDAYRDAGGYRTL 202


>gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
 gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
          Length = 572

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92
           SR +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G    
Sbjct: 46  SRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEADI 105

Query: 93  -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  ++VC +  C + G ++L+E  + ++        +   +      C G C +AP V 
Sbjct: 106 PRLTIRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157

Query: 152 IGKD 155
           +G +
Sbjct: 158 VGHN 161


>gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta
           [Methylobacterium extorquens DM4]
 gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium extorquens PA1]
 gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens DM4]
          Length = 572

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT--- 92
           SR +  +I  L   Q+  G +S   +  +A+ + +A+  V E ATFY  F +   G    
Sbjct: 46  SRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEADI 105

Query: 93  -RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  ++VC +  C + G ++L+E  + ++        +   +      C G C +AP V 
Sbjct: 106 PRLTIRVCDSITCAMFGADELLETLQREL--------ASDAVRVVRAPCVGLCDHAPAVE 157

Query: 152 IGKD 155
           +G +
Sbjct: 158 VGHN 161


>gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 560

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    +S+E+   V  V+   P  R +  +I  L   Q+  G +S   +  +A  + +  
Sbjct: 20  PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDACGHLSADHLAALAFEMKLGQ 77

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G        ++VC +  C L G E+L       +        
Sbjct: 78  AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLRAALEEGL-------- 129

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             G +      C G C  AP++ +G +  +  TPE++   I A  T
Sbjct: 130 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAAGDT 175


>gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
 gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
          Length = 537

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L + Q+    +S A +  +A+ + ++   V E+A+FY  F +   G  A  
Sbjct: 15  RRRDLLIEHLHKIQDAYDHLSAAHLRALADEMRLSQAEVYEVASFYHHFDIVKEGQAAPA 74

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L+G + L +V    +            +  ++V C G C +AP V +
Sbjct: 75  PLTIRVCDSVACSLKGADSLAKVLGETL--------DPAKIRIQKVPCIGRCASAPTVQV 126

Query: 153 GK 154
           GK
Sbjct: 127 GK 128


>gi|221201246|ref|ZP_03574286.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2M]
 gi|221206300|ref|ZP_03579313.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2]
 gi|221173609|gb|EEE06043.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2]
 gi|221179096|gb|EEE11503.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2M]
          Length = 166

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+ +P   R  +Q+C 
Sbjct: 21  SLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAP-PARVTIQMCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
              C   GCE L E  + +        H    H ++   ++ E V C G C  +P + + 
Sbjct: 80  AEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSPSMTVN 139

Query: 154 KDTYEDLTPERLEEII 169
              +  +TPE+ + ++
Sbjct: 140 GVLHAKVTPEKFDALL 155


>gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
 gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
          Length = 568

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 24/195 (12%)

Query: 21  ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           E   W  V  ++   P  R +  +I  L R Q++ G +S A +  +A  L ++   V E+
Sbjct: 30  EDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDKFGHLSAAHLRALAEELRLSQAEVYEV 87

Query: 79  ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-L 133
           A+FY  F +   G        ++VC +  C L G + L         +  L + +D   +
Sbjct: 88  ASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQAL---------KSALEQGTDPMQV 138

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA- 192
                 C G C  AP+V +G    +  TPE +   + A     GDT    P  + + +  
Sbjct: 139 RILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPAYEALDAYR 193

Query: 193 PAGGLTSLLDNNSKK 207
            AGG  +L D  + +
Sbjct: 194 TAGGYATLADLRATR 208


>gi|149203816|ref|ZP_01880785.1| ATP synthase subunit E [Roseovarius sp. TM1035]
 gi|149142933|gb|EDM30975.1| ATP synthase subunit E [Roseovarius sp. TM1035]
          Length = 154

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q   G++  AA   +A  L+++   +  + +FY  F+ +P G R  +++C  
Sbjct: 23  LLPILHAMQAAFGYIPEAAHRPIAEALNISRAELHGVISFYHDFRANPAG-RHVLKICRA 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G   L E    K+        ++G ++ E V C G C  AP  M+       + 
Sbjct: 82  EACQAVGGAVLAEATLAKLGLAWHGTTANGAVTVEPVYCLGLCACAPAAMLDDRVVGRVD 141

Query: 162 PERLEEII 169
             R++ ++
Sbjct: 142 AARIDALL 149


>gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
 gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens]
 gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
          Length = 572

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        + + + E++   P  R +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 25  PKGRQVDPHAKVEIEELLGTRP--RQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G     R  ++VC +  C + G ++L+E  + ++        
Sbjct: 83  AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQREL-------- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD 155
           +   +      C G C +AP V +G +
Sbjct: 135 ASDAVRVVRAPCVGLCDHAPAVEVGHN 161


>gi|254416932|ref|ZP_05030680.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
           7420]
 gi|196176296|gb|EDX71312.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
           7420]
          Length = 207

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
            Q SP  T+A V VC  + C  RG  K+ +V  N +      RN D  ++ ++  C   C
Sbjct: 101 LQPSPQKTKASVMVCKKSSCRKRGAAKVHQVMNNTLR----DRNLDDQVAIKDTGCMKQC 156

Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
              P  +VM  K  Y  + PE +  ++D      G  ++P   + + S+   GG
Sbjct: 157 KKGPCMVVMPDKARYNKVAPEDVPTLVDKHF---GSKLKPEANVSQRSTVRCGG 207


>gi|281357445|ref|ZP_06243933.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281316048|gb|EFB00074.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 150

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E I R P     S +I  L   Q  EG+VS  +I  ++    +  + V  + +FY QF+ 
Sbjct: 9   EKIGREP-----SNLIKGLQAVQGVEGYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKR 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G +  + +C  T C ++G   + E     +  +    +  G  S E V C G C  A
Sbjct: 64  VKPG-KYKIAICDGTACHIKGSPLVQEWVSRALGIEDGQTDERGHFSLETVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++ +    Y  L  +   +I+  +
Sbjct: 123 PVMSVNGRVYGKLDRKSTIKILKEY 147


>gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
 gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Nitrosospira multiformis ATCC 25196]
          Length = 598

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L+  QE   ++   AI  +A  L++  + V   A FY+   L P G R  V     
Sbjct: 28  LLQILIDVQEMYCFIPPEAITFIARHLNLPRVNVEGAAGFYSFLSLEPAG-RYRVLFSDN 86

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
               + G E+L+    N++  +P   + DG +S     C G C   P  +I       L+
Sbjct: 87  VTDRMLGNEELMRHFCNRLWLEPGKVSEDGLISTNFTSCTGMCDQGPTALINGWPVTRLS 146

Query: 162 PERLEEIID 170
            ER++ I D
Sbjct: 147 KERIDLIAD 155


>gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mesorhizobium sp. BNC1]
 gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chelativorans sp. BNC1]
          Length = 557

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q++ G +S   +  +A  + ++   V E+ATFY  F +   G  A  
Sbjct: 35  RRRDLLIEFLHLIQDRYGCLSARHLRALAEEMRLSQAEVYEVATFYDHFDVVKEGEAAPP 94

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVM 151
              ++VC +  CML G E LI           L   +D   +      C G C  AP   
Sbjct: 95  ALTIRVCDSVSCMLAGAETLI---------AELQAGADPAAIRIMRAPCMGRCAGAPAAR 145

Query: 152 IGKDTYEDLTPERLEEIIDAFSTG 175
           +G    +  T E L  +  A  TG
Sbjct: 146 VGDREVDGATAEGLLGMAAAGETG 169


>gi|317970223|ref|ZP_07971613.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
           CB0205]
          Length = 145

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A++ +L  AQ+  G +S + +  VA +L +   RV   A+FY  F+LSP   R    VC 
Sbjct: 21  ALLEVLAAAQQIYGHLSPSLLRHVAGLLRLPLSRVQGTASFYHLFRLSPP-PRHQCLVCT 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE---VECQGACVNAPMVMIGKDTY 157
            T C ++G   L +  +  + Q            W E   V C G+C   P++++  D +
Sbjct: 80  GTACHVQGAGLLFKALQTTLKQP-----------WCELGSVRCIGSCSGGPLLVVDGDIW 128

Query: 158 EDLT 161
              T
Sbjct: 129 THQT 132


>gi|126640813|ref|YP_001083797.1| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
          Length = 112

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A +L ++   +  +ATFY +    PVG R  + +C +  C L G E L E  + ++
Sbjct: 1   MNAIAQLLTISVADLEGVATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQREL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +      DG  +   + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 60  GIQFGQTTQDGRFTLLPICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 111


>gi|307730639|ref|YP_003907863.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia sp.
           CCGE1003]
 gi|307585174|gb|ADN58572.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. CCGE1003]
          Length = 161

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 23  AIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           A+   E+++R+  P R   +++ +L   Q++ G+V    +  +A +++++   V  + T+
Sbjct: 6   AVAPEELVARHAQPGR---SLLAVLHAIQDELGYVPPDTVAPLARVMNLSRAEVHGVITY 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKL---IEV---CRNKIHQKPLHRNSDGTLSW 135
           Y  F+  P      VQ+C    C   G E L   IE    CR     +     +   +  
Sbjct: 63  YHHFRTQPAAPVT-VQLCRAEACRSMGTEALARHIESHTGCRFDAEHE-----AGAAVEL 116

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C G C  +P +M+    +  +TP++ + I  A S
Sbjct: 117 ESVYCLGQCALSPAMMVNGTLHARVTPQKFDAIFAAAS 154


>gi|312795434|ref|YP_004028356.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167209|emb|CBW74212.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) (EC
           1.2.1.2) [Burkholderia rhizoxinica HKI 454]
          Length = 192

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G++  + I  +A  ++++   V  + T+Y  F+ SP      VQ+C 
Sbjct: 38  SLLSVLHAIQDDAGYIPDSVIAPLAQAMNLSRAEVHGVITYYHHFRTSPPAAVT-VQLCR 96

Query: 101 TTPCMLRGCEKLIEVCRNKI-HQKPLHRNSD--------------GTLSWEEVECQGACV 145
              C   G E L      +  H+    R+ D                +  +   C G C 
Sbjct: 97  AESCRAMGSEALARHAETRTGHRFDACRHGDDHRAAPPAAPLAGHPAVELQSAYCLGLCS 156

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    Y  +TPE+L+ ++ A
Sbjct: 157 TSPAMMVNGKPYARVTPEKLDTVLAA 182


>gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 562

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP    + + +   V  ++   P  R +  +I  L   Q++ G +S A +  +A  + ++
Sbjct: 20  QPKGRQYEDGAMAEVRALLGDKP--RDRDLLIEHLHLIQDEYGHLSAAHMRALAEEMRLS 77

Query: 72  YIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
              V E+A FY+ F +      A     ++VC +  C L G + L+   ++ +       
Sbjct: 78  QAEVYEVAKFYSHFDVVKEDEIAPPDLTIRVCDSLSCELAGAQALMAALKDGL------- 130

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
                +      C G C  AP++ IG +  +  TP+ +E+ I A  T
Sbjct: 131 -DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPQLVEKAIAAQDT 176


>gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 581

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S+ A+ ++   L +       +A+FY+ F L     R  V VC  
Sbjct: 29  LLPALHAVNDRVGWISQGALNLICETLHVPPADAYGVASFYSLFALDERPERV-VHVCTD 87

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C + G E + +V    +      R   G ++W    C G C  AP  +
Sbjct: 88  LACRITGAETVCDVLTEHVGAAGKAR---GGVTWLRSPCLGVCERAPAAL 134


>gi|315185456|gb|EFU19227.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta thermophila DSM
           6578]
          Length = 164

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YPP R    +I   ++      ++    +E VA  L +    +  I +FY+ F   P G 
Sbjct: 11  YPPRRDNLLLILHDIQDHNPRNYLPDEEVEEVARYLGIPVSELDGIISFYSMFSRRPRG- 69

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  +++C +  C L G   L    +  +  K      DG  + E V C G C   P +M+
Sbjct: 70  RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNCLGCCDKGPSLMV 129

Query: 153 GKDTYEDLT 161
             + +  +T
Sbjct: 130 NDELHTRMT 138


>gi|254441245|ref|ZP_05054738.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Octadecabacter antarcticus 307]
 gi|198251323|gb|EDY75638.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Octadecabacter antarcticus 307]
          Length = 182

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/144 (18%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + ++++R+  S  +  ++P+L   Q + G++    ++++A+  ++    V  + +FY  F
Sbjct: 37  MQDILARH--SVQEGPLLPILHSVQAEFGFIPSDVVQIIADHQNITRAEVHGVISFYHDF 94

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P G    +++C    C   G   L +    K+        ++G ++ E V C G C 
Sbjct: 95  RDAPAGKHT-IKICRAEACQAVGSNALSKRVLEKLGVDWGGTTANGAVTIEAVYCLGLCA 153

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
             P  M+       +   +L++++
Sbjct: 154 CGPAAMVDNKVVGRVDAAKLDKLL 177


>gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
 gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
          Length = 571

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 27  NEVISRYPPSRCQ-SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++V S    S CQ   +I  L   Q++ G +S A I  +   + ++   + E+ATFY  F
Sbjct: 32  DDVRSLLGSSPCQRDLLIEYLHLIQDKFGHLSAAHIRALGEEMRISMAEIYEVATFYAHF 91

Query: 86  QLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
            +   G        ++VC +  C L G ++L       +  K         +      C 
Sbjct: 92  DVVKEGETPPPALTIRVCDSLSCELAGAQQLKVALEGGLDAK--------NVRVLRAPCM 143

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C  AP++ IG +  +  TPE++   I A  T
Sbjct: 144 GRCDTAPVLEIGHNHIDHATPEKVLAAIAAQDT 176


>gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
 gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
          Length = 573

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 20  EESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + +A+ ++EV++   P +  +  +I  L + Q+  G + +  +  +A  L ++   V E+
Sbjct: 26  QAAALDMSEVLAILGPGAHRRDLLIEYLHQLQDHLGCLPKTHLSALAECLKLSQTEVFEV 85

Query: 79  ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           ATFY  F +    + V     V+VC    C + G E+LIE     +           T+ 
Sbjct: 86  ATFYHHFDVVESKNAVNHTLTVRVCNGPSCCMAGAEELIEKLPTLL---------GSTVR 136

Query: 135 WEEVECQGACVNAPMVMIGKD 155
            + V C G C  AP V +G+ 
Sbjct: 137 VQAVPCIGRCEQAPAVAVGQH 157


>gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 627

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 51  EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE 110
            ++GW+  A +  +A  L +   RV   A+FY+     P G    +     T  ML G +
Sbjct: 28  ARDGWLPPATLSALAGALGIPRARVESTASFYSFLHTRPAGEYRILFSDNITDRML-GNQ 86

Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
            L++   +K+  +P   + DG        C G C   P ++    T   LT ER++E+
Sbjct: 87  ALMQTLCDKLWLQPGKVSEDGLARVSTTSCTGMCDQGPALLANGRTITRLTLERIDEM 144


>gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 570

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 17/159 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L   Q++ G +S A +  +A  + M+   V E+ATFY  F +   G        ++
Sbjct: 57  LIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVATFYAHFNVVKEGETPPPALTIR 116

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C +  C L G + L     + +            +      C G C  AP + IG +  
Sbjct: 117 ICDSLSCELAGAQALKTALEDGLDAS--------EVRVVRAPCMGRCDTAPALEIGHNFV 168

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
           +  T E+++++I A     GDT    P  +   +  AGG
Sbjct: 169 DHATLEQVKQVIAA-----GDTHVHMPDYEAFDAYVAGG 202


>gi|89055051|ref|YP_510502.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Jannaschia sp.
           CCS1]
 gi|88864600|gb|ABD55477.1| formate dehydrogenase gamma subunit [Jannaschia sp. CCS1]
          Length = 167

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q   G+V   A  ++A  L++    +  + +FY  F+  P G R  +++C  
Sbjct: 31  LLPILHDVQAAFGYVPDDARALIATALNITEAELHGVISFYHDFRRKPAGKRV-LKICRA 89

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156
             C   G   + +    ++        +DG L+ E + C G C   P  MI     G+ T
Sbjct: 90  EACQAMGANAMSDAVLAQLGLGWGETAADGGLTVEPIYCLGLCACGPAAMIDGKLKGRVT 149

Query: 157 YEDLTPE 163
            + L  E
Sbjct: 150 ADSLIAE 156


>gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
 gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
          Length = 566

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P SR    +I  L   Q+  G +S   I  +A  +    
Sbjct: 26  PKGRQLEDQAHSEVLELLGEQPRSR--DMLIEFLHLIQDAYGHLSAPHIRALAEEMRTGQ 83

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E+L         QK L   
Sbjct: 84  AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQL---------QKALEDG 134

Query: 129 SDGT-LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            D + +      C G C  AP++ IG +  +  T E++E  I +  T
Sbjct: 135 LDASQVRVLRAPCMGRCDTAPVLEIGHNHIDHATLEKVEAAIASDDT 181


>gi|85707198|ref|ZP_01038284.1| ATP synthase subunit E [Roseovarius sp. 217]
 gi|85668252|gb|EAQ23127.1| ATP synthase subunit E [Roseovarius sp. 217]
          Length = 154

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P+L   Q+  G +  AA   +A  L+++   +  + +FY  F+ +P G R  +++C  
Sbjct: 23  LLPILHAMQDAFGHIPEAAHRPIAEALNISRAELHGVISFYHDFRANPAG-RHVLKICRA 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G   L +    K+        ++G ++ E V C G C  AP  M+       + 
Sbjct: 82  EACQAVGGTALADATLTKLGLDWHGTTANGAVTVEPVYCLGLCACAPAAMLDDRVVGRVD 141

Query: 162 PERLEEII 169
             R++ ++
Sbjct: 142 AARMDTLL 149


>gi|148554395|ref|YP_001261977.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
           wittichii RW1]
 gi|148499585|gb|ABQ67839.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
           wittichii RW1]
          Length = 159

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++PLL   QE+ G+V    +  VA  ++++   V  + +FY  F+ +P G R  V+ 
Sbjct: 24  RGALLPLLHDLQEELGFVGEETVAAVAAAMNLSRAEVHGVVSFYHDFRKAPAG-RHVVKY 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           C    C  RG   +     +++        +DG ++ E V C G C   P  ++
Sbjct: 83  CRAESCRSRGGVAIEAALADRLRVTMGETRADGQVTLEPVYCLGLCAIGPNALV 136


>gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
 gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
          Length = 627

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++   V+ V++R+      + ++ +L   QE+  W+S   +  VA    +   +V  +A 
Sbjct: 18  DAGTVVSAVLARHGAD--GTRLMQILREIQEETEWLSPDILTRVAEGTRLPRGQVEGVAG 75

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F   P+G    +     T  M    + +  +C+ K+  KP   + DG +S +   C
Sbjct: 76  FYHFFHTEPLGRYRVLWSDNITDRMAGNADLMARMCK-KLWLKPGRVSEDGLVSVDTTSC 134

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            G C   P +++       +T +R+++I++
Sbjct: 135 TGLCDQGPALLVNYRPITRMTAQRVDQIVE 164


>gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 572

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 21/150 (14%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  ++    P+R    +I  L   Q+ E  +S   +  +A+I+ +    V E+A+FY  F
Sbjct: 43  VRALLGNISPTR--DMLIEYLHMIQDSEKHLSARHLAALAHIMRIPMAEVWEVASFYDHF 100

Query: 86  QL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            L        P+ T   V+VC +  CM+ G E ++E  +     K         + +   
Sbjct: 101 DLVKEDETAPPLCT---VRVCTSLSCMMAGGETMLEKLQPYASDK---------VRFVPA 148

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
            C GAC  AP   +G    E  + E L+ +
Sbjct: 149 PCIGACDKAPAAAVGHKLVEHASFEALKAV 178


>gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
 gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
          Length = 626

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           ++++ +L+ AQE  G++   AI+ +++ L +    +  +A+FY+   LSP G    V   
Sbjct: 24  NSLLQILIGAQEIHGFIHADAIDYLSSALKLPRAMIEGVASFYSFLYLSPHG-EYRVLFS 82

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
                 + G + L++   +++  +P   + DG L      C G C   P +++       
Sbjct: 83  DNITDRMAGNQNLMQRLCSQLWVEPGKASEDGLLWVNTTSCTGMCDQGPAMLVNNIAINR 142

Query: 160 LTPERLEEI 168
           LT ++++ I
Sbjct: 143 LTQDKVDRI 151


>gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
 gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
          Length = 582

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q++ G +S   +  +A+ + +A   V E+ATFY  F +      A  
Sbjct: 63  RRRDLLIEHLHAVQDKFGHLSARHLAALAHDMRLAMAEVWEVATFYAHFDVVKEDAAAPP 122

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              V+VC +  C L G EK+++          L   S   +      C GAC  AP+  +
Sbjct: 123 AVTVRVCDSLSCALAGAEKVLDT---------LQSGSGSDVRVIRAPCMGACDKAPVAAV 173

Query: 153 GKDTYE 158
           G    E
Sbjct: 174 GHHLVE 179


>gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+SR A++ +   L +       +A+FY  F L     R  V +C  
Sbjct: 55  LLPALHAVNDRVGWISRPALDHICRRLTVPPAEAYAVASFYAMFALRRRPRRV-VHLCTD 113

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C   G +++      ++     H   DG  +W E  C G C  AP  +
Sbjct: 114 IACAAAGSDRMRARLTERLGPPGGH---DGEAAWHESPCLGMCERAPAAL 160


>gi|169334686|ref|ZP_02861879.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257424|gb|EDS71390.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
           17244]
          Length = 160

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 40  SAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
           S ++ ++++ Q Q    +++    + +A+ + +   +V E+ T++        G +  + 
Sbjct: 23  SDLLQIVLKIQRQIPGKFINFDIAKYIADEMQIPLSKVSEVVTYFDALSTKKRG-KYILG 81

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C  T C L G +K+ E+   ++  K      DG  + E V C GAC  AP V +  +  
Sbjct: 82  LCNATACSLNGKDKIKEIFERELGIKEGETTEDGLFTLELVPCFGACDVAPAVRVNDNVV 141

Query: 158 EDLTPERLEEII 169
             L  E+++ +I
Sbjct: 142 GRLNEEKIKALI 153


>gi|255659121|ref|ZP_05404530.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
 gi|260848566|gb|EEX68573.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
          Length = 168

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-VQVCGT 101
           I L ++A  +  +V       +A+ L M    + +   FY++  LSPV    + +QVC +
Sbjct: 36  ILLEVQALNERHYVPEPTAYYIADRLKMRVTNIFDCLKFYSE--LSPVPRAKYPIQVCCS 93

Query: 102 TPCMLRGCE--KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             C +   +  +LI      +  K      DG  + E+V C GAC  AP V I    Y+ 
Sbjct: 94  PACRVNRVDSHRLISTLERLLDIKLGETTYDGRFTLEKVTCIGACDRAPAVRINGHVYDH 153

Query: 160 L-TPERLEEIIDAF 172
           L T E++E ++ + 
Sbjct: 154 LDTQEKIETLLRSL 167


>gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72]
 gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72]
          Length = 602

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           S+++ +L+  Q++ G+++ +A+  VA  LD+    V  +A FY+    SP G R  +   
Sbjct: 22  SSLLQVLIAVQDRLGYLAPSALTEVAAALDLPRAHVEGVAGFYSFLHTSPAG-RYRILFA 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
                 ++G  +L+     K+  +P   + DG +      C G     P  ++       
Sbjct: 81  DNVIERMQGSAELMHALCGKLWVEPGRVSEDGLVGVAPTSCIGMGDQGPAALVNGRPITR 140

Query: 160 LTPERLEEIID 170
           LT  R+ EI +
Sbjct: 141 LTHARINEIAE 151


>gi|84499615|ref|ZP_00997903.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
 gi|84392759|gb|EAQ04970.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   QE  G +   A  ++   L +    +  + +FY  F+  P G R  V+V
Sbjct: 23  EGALLPILHALQEAYGHIPEGAYPLLTATLGITRAELHGVVSFYHDFRDVPAG-RHVVKV 81

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G   +     ++          DG ++ E V C G C   P  M+      
Sbjct: 82  CRAEACQSVGANAMAATLLDRFGLDWHGTTPDGRVTIEPVYCLGLCACGPAAMVDGKLIG 141

Query: 159 DLTPERL 165
              P +L
Sbjct: 142 RADPAKL 148


>gi|318041124|ref|ZP_07973080.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
           CB0101]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +N V+ R+        +I +L  AQ+  G +S   +  +A  L + + RV   A+FY  F
Sbjct: 14  LNSVLQRHGHQ--AHGLIEVLNHAQQLYGHLSEPLLRHIARQLQLPFSRVQGTASFYHLF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +      R    VC  T C + G  +L+   RN   ++         +    V C G C 
Sbjct: 72  RFK-APARHSCLVCTGTACHVLGAAQLLADLRNAAMEEL-------GVELGSVRCIGTCS 123

Query: 146 NAPMVMIGKDTYEDLTP----ERLEEI 168
            AP+V++  + +  L+     +RL E+
Sbjct: 124 GAPLVVVDGEVWNHLSSAAVLKRLREL 150


>gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 588

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR-- 93
           +R    ++  L   Q+Q   + + +I  +A  L +   ++  +  FY+ F  SP G    
Sbjct: 15  TRQNDHLLHRLYDLQQQFHHIPQQSIINLATELKLPISQIEGVVDFYSFFHRSPRGRYDI 74

Query: 94  --AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             ++   CG    M + CEKL        +  P +  +DG++S +   C G C   P ++
Sbjct: 75  LFSNCTSCGDLAMMQQLCEKL--------NVSPGNTRADGSVSIDATSCIGMCDQGPALL 126

Query: 152 IGKDTYEDLTPERLEEI 168
           +   T   L+ +RLE I
Sbjct: 127 VNGRTITQLSAQRLEMI 143


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 17/122 (13%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G  K++E   N+I ++ L       ++  E  C G C   P++++
Sbjct: 3   RSHVLVCGGTGCTSSGSPKIMEALHNEIKKQGLEEE----VAVVETGCHGLCALGPIMIV 58

Query: 153 GKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI----SSAPAGGLTSLLDNNSK 206
             D   Y  + P  + EI+        + +  G  + R+    + +P GG+ +L D +  
Sbjct: 59  YPDATFYSMVQPNDIPEIVS-------EHLLKGRVVTRLLYQETVSPTGGIKALRDTDFY 111

Query: 207 KR 208
           K+
Sbjct: 112 KK 113


>gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
          Length = 561

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89
           R +  +I  L   Q+  G +S A +  +A  + ++   V E+ATFY  F +        P
Sbjct: 43  RRRDLLIEFLHLVQDANGHLSAAHLRALAEEMRLSQAEVYEVATFYAHFDVVKESETPPP 102

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
             T   ++VC +  C L G + L     + +            +      C G C  AP+
Sbjct: 103 ALT---IRVCDSLSCELAGAQALKAALEDGL--------DPAQVRVLRAPCMGRCDTAPV 151

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           + IG +  +  TP +++  I A      DT    P    ++S  A G  ++L++   +  
Sbjct: 152 LEIGHNHIDHATPAKVQAAIVA-----DDTHAHLPDYQTLASYCADGGYAVLEHLRAQGD 206

Query: 210 KKKKDDKI 217
            +   DK+
Sbjct: 207 WQAVQDKV 214


>gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
 gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
          Length = 570

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 21  ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + A W  V  ++   P  R +  +I  L   Q++ G +S A +  +A  + ++   V E+
Sbjct: 36  QDAAWEEVRALLGERP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEEMRLSMAEVYEV 93

Query: 79  ATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-L 133
           A+FY  F +   G        ++VC +  C L G + L         +  L    D T +
Sbjct: 94  ASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQAL---------KSALEEGLDPTQV 144

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
                 C G C  AP++ +G +  +  TPE+++  I A  T
Sbjct: 145 RVLRAPCMGRCDTAPVLELGHNHIDHATPEKVQAAIVAQDT 185


>gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
 gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
          Length = 570

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R    +I  L   Q++ G +S A +  +A  + M+   V E+ATFY  F +   G     
Sbjct: 52  RRADVLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMAEVYEVATFYAHFDVVKEGEAPPP 111

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              +++C +  C L G + L     + +            +      C G C  AP + I
Sbjct: 112 ALTIRICDSLSCELAGAQALKTALEDGLDAS--------EVRVVRAPCMGRCDTAPALEI 163

Query: 153 GKDTYEDLTPERLEEIIDAFST 174
           G +  +  T E+++++I A  T
Sbjct: 164 GHNFVDHATLEKVKQVIAAGYT 185


>gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
 gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
          Length = 561

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SPVGTRA 94
           +I  L   Q   G +S A +  +A  + M+   V EIATFY  F +        P  T  
Sbjct: 48  LIEFLHLIQGAYGHLSAAHLRALAEEMRMSMAEVYEIATFYAHFDVVKEDEAPPPALT-- 105

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC +  C L G ++L     + +    +              C G C  AP++ +G 
Sbjct: 106 -IRVCDSLSCELAGAQQLKAALEDGLDASEVRVL--------RAPCMGRCDTAPVLELGH 156

Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLD 202
              ++ T E++E  I A     GDT    P  +   +  A GG  +L D
Sbjct: 157 AHIDNATVEKVEAAIAA-----GDTHAHIPDYETFDAYVAEGGYAALKD 200


>gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxidans DMS010]
 gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxydans DMS010]
          Length = 565

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 19/142 (13%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------S 88
           SR +  +I  L + Q+   ++S   +  +A+ + ++   V E+ATFY  F +        
Sbjct: 43  SRQKDLLIEHLHKIQDFYHYISAPHLVALAHEMKLSRAEVYEVATFYHHFDVIKEDQTPP 102

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P  T   V+VC +  C + G E+LI      + Q          +  + V C G C  AP
Sbjct: 103 PPLT---VRVCDSMTCEMLGAEELIHSLEQGLGQD---------VRVQRVPCIGRCDKAP 150

Query: 149 MVMIGKDTYEDLTPERLEEIID 170
           + ++G +  E     ++ E +D
Sbjct: 151 VAVVGMNPVEHADAAQVIEFVD 172


>gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
 gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 28/186 (15%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  +I   P  R    +I  L   Q+  G +S   +  +A ++ ++   V E+ATFY  F
Sbjct: 33  VQALIGSRPLDR--DLLIEFLHLIQDAYGHLSARHLRALAEVMRLSMAEVYEVATFYAHF 90

Query: 86  QL-------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEE 137
            +        P  T   ++VC +  C L G ++L         +  L    D T +    
Sbjct: 91  DVVKENETPPPALT---IRVCDSLSCELAGAQQL---------KAALEDGLDPTEVRVLR 138

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GG 196
             C G C  AP++ +G    +  TPE++   I A  T   D     P  +  +   A GG
Sbjct: 139 APCMGRCDTAPVLELGHHHIDHATPEKVRAAIAANHT-HADI----PDYETFAKYQAEGG 193

Query: 197 LTSLLD 202
            T+L D
Sbjct: 194 YTALQD 199


>gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
 gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
          Length = 563

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 21  ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + A W  V  ++   P  R +  +I  L   Q+  G +S A +  +A  + ++   V E+
Sbjct: 27  DDAAWAEVQALLGDRP--RHRDLLIEFLHLIQDAHGCLSAAHLRALAEEMRLSQAEVYEV 84

Query: 79  ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           ATFY  F +     PV     +++C +  C L G ++L     + +            + 
Sbjct: 85  ATFYAHFDVVKEGEPVPPALTIRICDSLSCELAGAQQLKTALEDGLDAS--------EVR 136

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
                C G C  AP + +G +  +  T +++   I A     GDT    P  +  S+  A
Sbjct: 137 VLRAPCMGRCDTAPALELGHNHIDHATFDKVAAAIAA-----GDTHAHVPDYEGYSAYVA 191

Query: 195 GG 196
            G
Sbjct: 192 NG 193


>gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72]
 gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp.
           BH72]
          Length = 571

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L R Q+  G +    +  +A  + +A   V E+ATFY  F + P G        V+
Sbjct: 41  LIEYLHRLQDAHGALYADHLAALAEAMKLAQAEVYEVATFYHHFDVVPAGETPPPLLTVR 100

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           VC +  C L G  +L    + ++  +         +  + V C G C  AP+ ++G++
Sbjct: 101 VCDSLTCALYGGPELAAELQGRLGAE---------VRVQRVPCVGRCDCAPVAVVGQN 149


>gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
 gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
          Length = 609

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L + Q +  ++  AAIE ++ +L++   +++ +  FY+ F L+P G    +     
Sbjct: 19  LLQILRQIQSRYHYIPEAAIEQLSGLLNIPRTQIIGVVEFYSFFHLAPRGQYELLISDSI 78

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           T  ML G + L +    K+         DG +S +   C G C   P  ++
Sbjct: 79  TDHML-GKKDLFDYLAKKLDVAVGEVREDGVVSLDNTSCTGMCDQGPAGLV 128


>gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
 gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
          Length = 569

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQ 97
           +I  L   Q++ G +S A +  +A  + ++   V E+ATFY  F +   G        ++
Sbjct: 56  LIEHLHLIQDEYGHLSAAHLRALAEEMRLSMAEVYEVATFYAHFDVVKEGEVPPPALTIR 115

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGACVNAPMVMIGKDT 156
           +C +  C + G ++L         +  L    D T +      C G C  AP + IG + 
Sbjct: 116 ICDSLACEMAGAQEL---------KAALEEGLDATQVRVVRAPCIGRCDTAPALEIGHNF 166

Query: 157 YEDLTPERLEEIIDA 171
            +  T E++E +I A
Sbjct: 167 VDHATVEKVEAVIAA 181


>gi|260886838|ref|ZP_05898101.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
           35185]
 gi|330839359|ref|YP_004413939.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260863437|gb|EEX77937.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
           35185]
 gi|329747123|gb|AEC00480.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 40  SAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-V 96
           + ++ +L+  Q+  +  +V   A   VA  L +    + +  TFY    LSPV    + +
Sbjct: 28  TQIVGILLDVQDLFERHYVPEPAAYYVAEKLPLKISLIYDCLTFYAS--LSPVPRAKYPI 85

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           QVC +  C +   E L    ++ +         DG  + E+  C GAC  AP V +  + 
Sbjct: 86  QVCDSVVCRINENETLFSALKSLLGIDVGEVTYDGRFTLEKTPCFGACDIAPAVRVNGEV 145

Query: 157 YEDL-TPERLEEII 169
           Y  L + E++EE++
Sbjct: 146 YGHLDSREKIEELL 159


>gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 219

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q+Q GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ 
Sbjct: 139 RAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRY 197

Query: 99  CGTTPCMLRGCEKL 112
           C +  C + G + +
Sbjct: 198 CDSVVCHITGYQGI 211


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+H+ VCG T C+  GCE++ E  + ++ ++ L       +   E  C G C   P++++
Sbjct: 7   RSHILVCGGTGCVSSGCEEVQEALKEELDKQGLTNE----IKIVETGCHGFCEKGPILIV 62

Query: 153 GKDT--YEDLTPERLEEIID 170
             +   Y ++ PE LEE+++
Sbjct: 63  YPEGVFYCEVQPEDLEELVE 82


>gi|226323627|ref|ZP_03799145.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
 gi|225207811|gb|EEG90165.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVE 139
           FY  F   P G    ++VC  T C +R    ++E    ++   +  H + D   + E V 
Sbjct: 5   FYENFSFEPKGKYV-IKVCDGTACHVRKSIPILEALYKELGLNEHKHTSDDMLFTVETVS 63

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           C GAC  AP + +  + +  ++PE++ ++++
Sbjct: 64  CLGACGLAPAITVNDEVHPKMSPEKVIKLLE 94


>gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
 gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
          Length = 603

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V +++  +   R +   I L +  Q++ G++S  A++ +A  L +  + + ++A+FY+  
Sbjct: 9   VKDIVKEFGADRTRLTDIALAV--QQRFGFISDDAVQAIATGLGVHAVEIEDMASFYSFL 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             +P G R  +++  T    ++G   +       +       ++DG  + E     G   
Sbjct: 67  DRAPRG-RFRIRLSKTPISFMKGATDVARAFEEALGLSLGDTSADGQFTLEWTSDIGMAD 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P  +I       LTPE + +I+ A 
Sbjct: 126 QEPSALINSTVLTALTPEDVPQIVAAL 152


>gi|295704727|ref|YP_003597802.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
 gi|294802386|gb|ADF39452.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
          Length = 126

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RNK+ +  L    D T+      C G C +AP+ 
Sbjct: 8   GTKHHVLICNGSSCMRKGGEEATQAIRNKVTELDL----DETVHTTRTRCNGRCKDAPVA 63

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T      I++    G
Sbjct: 64  IVYPSGDWYKQVTETVAHRIVEEHLAG 90


>gi|224696914|emb|CAX51536.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 455]
 gi|224696917|emb|CAX51538.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 402]
 gi|224696926|emb|CAX51544.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 403]
 gi|224696929|emb|CAX51546.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 404]
 gi|307697997|gb|ADN86369.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++ +PVG +  + +C   PC L G E+  E  + K+         DG  + +E EC GAC
Sbjct: 2   YETAPVG-QHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60

Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +AP+V++        ++ E+++++++  S
Sbjct: 61  GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90


>gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    +  G++S  A+  VA  L +    V  +ATFY  F + P   R  V VC  
Sbjct: 50  LLPALHAVSDAVGYLSEGALNHVATRLSVPPADVYGVATFYAMFTVEPRARRV-VHVCDD 108

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             C   G E L       +  + +   +     W    C G C  AP VM 
Sbjct: 109 VACGPVGGEDLAARLTADLGPEGVGEEA----CWVRSPCLGLCERAPAVMF 155


>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
 gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
          Length = 565

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97
           +I  L   Q++   +S   +  +A  L ++   V E+A+FY  F +      +     ++
Sbjct: 49  LIEYLHLIQDKFKHLSTQHLAALAEELRLSQTEVYEVASFYAHFDIVKEDEEIPPSLTIR 108

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C L G + L+     K+ +K    N  G +      C G C  AP + IG +  
Sbjct: 109 VCDSLSCELAGAQDLL----FKLGEK---YNGGGKVRVVRAPCMGRCDTAPTLEIGHNHI 161

Query: 158 EDLTPERLEEII 169
           ++   E++E+ I
Sbjct: 162 DNANEEKVEKAI 173


>gi|224696908|emb|CAX51532.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica
           HKI 454]
 gi|224696911|emb|CAX51534.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 512]
 gi|224696923|emb|CAX51542.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 513]
 gi|307697982|gb|ADN86359.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697985|gb|ADN86361.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697988|gb|ADN86363.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697994|gb|ADN86367.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++ +PVG +  + +C   PC L G ++  E  + K+         DG  + +E EC GAC
Sbjct: 2   YETAPVG-QHKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60

Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +AP+V++        ++ E+++++++  S
Sbjct: 61  GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90


>gi|60687924|gb|AAX30295.1| SJCHGC02806 protein [Schistosoma japonicum]
          Length = 82

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           G E ++   +  +  +P     D   +  EVEC GACVNAPM+ I  D Y      RL
Sbjct: 6   GSEAILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYILFNINRL 63


>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
 gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 562

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA-- 94
           R +  +I  L   Q++ G +S A I  ++  + +    + E+A+FY  F +   G     
Sbjct: 44  RDRDLLIEFLHLVQDKFGHISAAHIRALSEEMRVGQAEIYEVASFYAHFDVVKEGETPPP 103

Query: 95  --HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L G E+L +   + +        +   +      C G C  AP++ I
Sbjct: 104 ALTIRVCDSLSCELAGAEQLKKALEDGM--------NPAQVRVLRAPCMGRCDTAPVLEI 155

Query: 153 GKDTYEDLTPERLEEIIDAFST 174
           G +  +  T  ++E  I +  T
Sbjct: 156 GHNHIDHATLAKVETAIASDDT 177


>gi|19115849|ref|NP_594937.1| conserved eukaryotic protein [Schizosaccharomyces pombe 972h-]
 gi|3183091|sp|O13691|NDUV2_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit homolog
           C11E3.12, mitochondrial; Flags: Precursor
 gi|2330670|emb|CAB11191.1| conserved eukaryotic protein [Schizosaccharomyces pombe]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 18/163 (11%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI--LDMAYIR 74
           F  E+      +++RYP     +A++PLL  AQ Q G W+   A+  +A++  + + Y+ 
Sbjct: 7   FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCML----RGCEKLIEVCRNKIHQKPLHRNSD 130
            L I  +   F   P   R  V++C +  C      +G       CR+   +      + 
Sbjct: 67  SL-ILAYPNDFFWRPKKPR--VRICNSWMCQQAAEEQGNSNWDSQCRSVATKYGFDVENT 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G        C G C   P + I    Y   T E+L +I++A +
Sbjct: 124 G--------CLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALT 158


>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
          Length = 1206

 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 70/144 (48%), Gaps = 17/144 (11%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  +    ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 631 YNANEAAGLDEILAKYPKEK--EYLMPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIES 688

Query: 78  IATFYTQFQLSPVGTRAH-----VQVC-GTTPCMLRGCEKLIEVCRN--KIHQKPLHRNS 129
           I + Y  F       R H     + +C     CM++G  +L++  +    IH+       
Sbjct: 689 ILSSYHYF------PREHTIAILMSICVHCHNCMMKGQGRLLKTIQETYDIHETHGGVAK 742

Query: 130 DGTLSWEEVECQGACVN-APMVMI 152
           DG+ +   +   G CVN AP +MI
Sbjct: 743 DGSFTLHTLNWLGYCVNDAPAMMI 766


>gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Alicycliphilus denitrificans BC]
 gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans BC]
          Length = 633

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP   + ++  A+    +  R P    +  +I  L    ++ G +    +  +A ++++ 
Sbjct: 32  QPEPQALADVQAL----IGPRPPEGHARDLLIEHLHLINDRHGALHERHLVALARLMNLP 87

Query: 72  YIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
              V E+A+FY  F++   G    R  ++VC +  C L G  +L+     +     L   
Sbjct: 88  MAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR-----LRAL 142

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             G +  + V C G C  AP+ ++ +      T ER+   +D
Sbjct: 143 GHGDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184


>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
 gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
 gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
 gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
          Length = 602

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++ RY   R +  +I +L   Q + G +  A +  +   L ++ + + E A+FY  F
Sbjct: 5   ITTILERYRSDRTR--LIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYHFF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G +  + +C +    + G + + E    +   +    + +G     +  C G   
Sbjct: 63  LDKPSG-KYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGLSD 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             P ++I K  +  L P ++ +II     G+
Sbjct: 122 QEPAMLIDKVVFTRLRPGKITDIIAQLKQGR 152


>gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
 gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
          Length = 633

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP   + ++  A+    +  R P    +  +I  L    ++ G +    +  +A ++++ 
Sbjct: 32  QPEPQALADVQAL----IGPRPPEGHARDLLIEHLHLINDRHGALHERHLVALARLMNLP 87

Query: 72  YIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
              V E+A+FY  F++   G    R  ++VC +  C L G  +L+     +     L   
Sbjct: 88  MAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLPGR-----LRAL 142

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             G +  + V C G C  AP+ ++ +      T ER+   +D
Sbjct: 143 GHGDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVD 184


>gi|307697976|gb|ADN86355.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697979|gb|ADN86357.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++ +PVG +  + +C   PC L G ++  E  + K+         DG  + +E EC GAC
Sbjct: 2   YETAPVG-QHKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60

Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +AP+V++        ++ E+++++++  S
Sbjct: 61  GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90


>gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
 gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 3/168 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++ +L + Q++   +   A+ ++A +     + V  + +FY  F     G    +++C  
Sbjct: 23  MMDILWQVQDKLRCIDGDAMSLIAALTGTYRVEVEGVVSFYAFFSDKRKGD-ITIRLCDD 81

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
                 G + + E   + +  +P   ++DG  S E   C G C  AP V+I       LT
Sbjct: 82  IVDRHAGAQAVAEAFSDALGIQPGETSADGAFSLEFTPCIGMCDQAPAVLINDVVVTRLT 141

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           P +++ I+      +      G   D  +S P   + +++ NN ++ G
Sbjct: 142 PAKVKNILRTLRKTKDPQTLIGKTGDGANSHPL--VQAMVRNNIRQPG 187


>gi|266619596|ref|ZP_06112531.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
           hathewayi DSM 13479]
 gi|288868846|gb|EFD01145.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
           hathewayi DSM 13479]
          Length = 149

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 28  EVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           E++  Y   R    Q  ++ +L   QE  G++       +A    +    +L++   Y  
Sbjct: 9   EIVDYYSSQRDAGSQENIVEMLREVQELYGYIPSEKTRAMAEATGVKQTLLLQLIKLYPS 68

Query: 85  FQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           F+ +P G   H + VC    C  +G  ++ E        K +     G       EC   
Sbjct: 69  FKKAPYG---HCITVCTGARCGDKGSAEVFEAVL-----KAVEARESGAFKIVMKECLKQ 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP +M+  D+Y  + P+ +  I+  +
Sbjct: 121 CKTAPNLMVDSDSYGCVKPDEVASILSNY 149


>gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15]
          Length = 571

 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 20/135 (14%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89
           R +  +I  L   Q+ +G++S A +  +A+ +++    V E ATFY  F +        P
Sbjct: 42  RHRDRLIEHLHLIQDADGYLSMARLRALASFMNLPMADVYETATFYAHFDVVHDEQTPPP 101

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAP 148
             T   ++VC +  C L G   L          K L   +D   +      C G C  AP
Sbjct: 102 AIT---LRVCDSLSCQLAGASAL---------HKTLADGTDPAQVRVVHAPCMGRCDTAP 149

Query: 149 MVMIGKDTYEDLTPE 163
           +V +G     + T E
Sbjct: 150 VVAVGHHHVGNATAE 164


>gi|294499376|ref|YP_003563076.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
 gi|294349313|gb|ADE69642.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
          Length = 126

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RNK+ +  L    D T+      C G C +AP+ 
Sbjct: 8   GTKHHVLICNGSSCMRKGGEEATQAIRNKVTELDL----DETVHTTRTRCNGRCKDAPVA 63

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T      I+     G
Sbjct: 64  IVYPSGDWYKQVTETVAHRIVKEHLAG 90


>gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit
           [Cupriavidus metallidurans CH34]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++ RY   R +  ++ +L   Q   G +    +  +A  L+++ + + E A+FY  F
Sbjct: 5   IRTILERYRSDRAR--LMDILWDVQHLYGHIPDEVLPQLAAELNLSPLDIRETASFYHLF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G +  + +C +    + G + + +    +   +    + +G     E  C G   
Sbjct: 63  HDKPSG-KHRIYLCNSVIAKMNGYQAVHDALERETGVRFGETDPNGMFGLFETPCIGLSD 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             P ++I K  +  L P ++ +II     G+
Sbjct: 122 QEPAMLIDKVVFTRLRPGKIADIIAQLKQGR 152


>gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 570

 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97
           +I  L   Q++   +S A I  +A  + ++ + V E+A+FY  F +     P      ++
Sbjct: 45  LIEYLHLIQDEYKCLSAAHIRALAEEMRLSQVEVYEVASFYDHFDVVKEGEPEPAPLTIR 104

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  CM+ G E L       I      RN+   +      C GAC  AP   IG    
Sbjct: 105 VCDSITCMMMGAEALHAGLETGI-----DRNA---VRVVHAPCMGACDVAPAARIGDREV 156

Query: 158 EDLTPERLEEIIDAFSTG 175
            + T + L  ++++   G
Sbjct: 157 GNATVDGLLAMVESGEIG 174


>gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
 gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
          Length = 566

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 2/100 (2%)

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
           SR     VA  L +    V   A+F+  F  +P G R HV+VC    C        +   
Sbjct: 46  SRTPPAGVARTLGLPAAAVEGPASFFADFS-APRGAR-HVRVCSAAACFAATGGAHVPEV 103

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
              +      ++ DGT+S + V C G C   P  ++G + 
Sbjct: 104 EAALGVPSGSKSPDGTVSLQAVRCLGYCFAGPAALVGDEA 143


>gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
           A3(2)]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ V   L +       +ATFY  F + P      + VC  
Sbjct: 38  LLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 96

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             C   G  +L     +++         +  +  E   C G C  AP  ++
Sbjct: 97  LACTAAGASRLCAAVESRL-------GPESGVKLERSPCLGLCERAPATLV 140


>gi|256783975|ref|ZP_05522406.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 261

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ V   L +       +ATFY  F + P      + VC  
Sbjct: 55  LLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 113

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             C   G  +L     +++         +  +  E   C G C  AP  ++
Sbjct: 114 LACTAAGASRLCAAVESRL-------GPESGVKVERSPCLGLCERAPATLV 157


>gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
          Length = 571

 Score = 42.7 bits (99), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 14/151 (9%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q++ G++    +   +    +   R+ E+A+F+  ++L P  T   V +C    C L G 
Sbjct: 10  QQKFGYLPEEELRAFSKRSQIPMYRLHEVASFFPHYRLKPPAT-GTVLICRDLACHLAGA 68

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI- 168
            +L++        K   R +D  +    V C G C  AP ++I        T  +L  + 
Sbjct: 69  SRLLQTL------KATARETDERIEVGGVSCLGQCDRAPALLINDQVIWGQTESQLRALT 122

Query: 169 ---IDAFSTGQGDTIRPGP---QIDRISSAP 193
              +   + G  D +  GP   QID     P
Sbjct: 123 RDSVHQRTRGVHDELDKGPTGWQIDPYEGQP 153


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 42.7 bits (99), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+H+ +CG T C+  GCE++ +   +++ ++ L       ++  E  C G C   P+++I
Sbjct: 7   RSHIIICGGTGCVSSGCEEVQKALEDELDKQDLTDE----INIVETGCHGLCEKGPVMVI 62

Query: 153 GKDT--YEDLTPERLEEII 169
             +   Y +L PE +EE++
Sbjct: 63  YPEGIFYCELQPEDMEELV 81


>gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 563

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  V    PP+R    +I  L   Q+  G +    +  +A+ L++A   V E+ATFY  F
Sbjct: 31  VRAVSGGLPPTR--DLLIEHLHCLQDHYGHLKAEHLVALAHELNLAPAEVYEVATFYHHF 88

Query: 86  QL--------SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            +         P+  R    VC    C L G + L++     +         DG +  + 
Sbjct: 89  DVVHDNAAPPPPITVR----VCDAIGCALSGADDLVQALEAGL--------GDG-VRVQR 135

Query: 138 VECQGACVNAPMVMIG 153
           V C G C  AP+ ++G
Sbjct: 136 VPCVGRCDQAPVAVVG 151


>gi|224696920|emb|CAX51540.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++ +P+G +  + +C   PC L G E+  E  + K+         DG  + +E EC GAC
Sbjct: 2   YETAPIG-QHKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60

Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +AP+ ++        ++ E+++++++  S
Sbjct: 61  GDAPVALLNNHRMCSFMSREKIDQLLEELS 90


>gi|307697991|gb|ADN86365.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score = 42.4 bits (98), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++  PVG +  + +C   PC L G ++  E  + K+         DG  + +E EC GAC
Sbjct: 2   YETVPVG-QHKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGAC 60

Query: 145 VNAPMVMIGKDTY-EDLTPERLEEIIDAFS 173
            +AP+V++        ++ E+++++++  S
Sbjct: 61  GDAPVVLLNNHRMCSFMSREKIDQLLEELS 90


>gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+VR L   +  P      E +   + E++      R +  +I  L   Q++ G +S A 
Sbjct: 1   MAVRELRPRDRGPKGRELDETAWSDIRELLGE--GERRRDLLIEYLHLIQDRFGCLSAAH 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVC 116
           +  +A  + ++   V E+A+FY  F +   G        +++C +  C L G E LI   
Sbjct: 59  LRALAEEMRLSQAEVYEVASFYDHFDVVREGEEKPAPLTIRICDSISCALAGAEALIGEV 118

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
              +            +      C G C  AP   IG
Sbjct: 119 SAGV--------DPAAIRVVRAPCMGRCATAPAARIG 147


>gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa]
          Length = 107

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDM 70
           +  VA +L +
Sbjct: 98  MNKVAEVLQV 107


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score = 42.0 bits (97), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G E LI + + ++ +  L       ++  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSETLISLLQEELKKNGLENE----VAIVKTGCHGLCAQGPVMVI 58

Query: 153 GKDT--YEDLTPERLEEII 169
             D   Y  + PE + EI+
Sbjct: 59  YPDATFYSMVKPEDIPEIV 77


>gi|12644506|sp|O87688|CBIW_BACME RecName: Full=Putative 2Fe-2S ferredoxin
 gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus megaterium]
          Length = 127

 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RNK+ +  L      T +     C G C +AP+ 
Sbjct: 10  GTKHHVLICNGSSCMRKGGEEATQAIRNKVAELNLDEAVHTTRT-----CNGRCKDAPVA 64

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T +    I++    G
Sbjct: 65  IVYPSGDWYKQVTEKVAHRIVEEHLAG 91


>gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 571

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-------SP 89
           R +  +I  L   Q+  G++S   +  +A+ +++    + E ATFY  F +        P
Sbjct: 42  RHRDRLIEHLHVVQDACGYLSMPHLRALASFMNLPMAAIYETATFYAHFDVIHDEQAPPP 101

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
             T   ++VC +  C L G E L        HQ         T+      C G C  AP+
Sbjct: 102 AIT---LRVCDSLSCQLAGAEAL--------HQALSDGADPATVRVRRAPCMGRCDTAPV 150

Query: 150 VMIGK 154
           V +G 
Sbjct: 151 VEVGH 155


>gi|255019942|ref|ZP_05292016.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970601|gb|EET28089.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
          Length = 129

 Score = 41.6 bits (96), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           QE  G++   A+   A+   +  ++V E+ +FY      P G R  +++C +  C L G 
Sbjct: 5   QEALGYIDDEALHYAADCTGLTPVQVEELCSFYPLVLRRPAG-RHLLRICDSVACHLAGA 63

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            +L+         +       G  S     C G C  AP V++        +P  LE+++
Sbjct: 64  PELVRRAEAISGVRLGQVAGAGHYSILPHVCLGLCDRAPAVLVDGRAVGGFSPTALEQLL 123

Query: 170 DAFSTG 175
             +  G
Sbjct: 124 AEWEQG 129


>gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
          Length = 564

 Score = 41.2 bits (95), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L + Q+    +S A I  +A  L ++   V E+ATFY  F +   G        V+
Sbjct: 49  LIEFLHQIQDTYHHISAAHIAALARELKLSQTEVYEVATFYHHFDVIKEGESPPPPLTVR 108

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
           VC +  C + G + LI   +  + +          +  ++V C G C  AP+ ++G
Sbjct: 109 VCDSVTCEIGGAKTLIAELKAVLGE---------GVRVQKVPCVGRCEQAPVAVVG 155


>gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 558

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +  QP      + +   V  ++   P  R +  +I  L + Q+  G +    +  +A
Sbjct: 7   LSRKPSQPKGRQLEDAALTEVQALLGEEP--RRRDLLIEHLHKIQDAYGCLEARRLRALA 64

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             + ++   V E+A+FY  F +   G        V+VC +  C L+G + L     + + 
Sbjct: 65  EEMRLSQAEVYEVASFYHHFDIVREGEVKPAPVTVRVCDSITCSLKGADALAASLESGVD 124

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
                      +  ++V C G C  AP   +GK
Sbjct: 125 PS--------KVRIQKVPCIGRCAAAPAAQVGK 149


>gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42]
 gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Acidovorax sp. JS42]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH------ 95
           +I  L R  +  G +    +  +A  +++   +V E+A+FY  F++     R H      
Sbjct: 62  LIEYLHRLNDHFGVLHDRHLVALARQMNLPMAQVYEVASFYHHFEI----VRGHDAQAPR 117

Query: 96  --VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             V+VC +  C + G  +L+E    +     L     G +    V C G C  AP+ ++
Sbjct: 118 LVVRVCDSLSCTMAGARELLEALPAR-----LQAAGQGDVQVVAVPCVGRCEQAPVAVV 171


>gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + HV VCG T C   GC+  ++  +  I  + L      T+      C G C   P++ +
Sbjct: 30  KYHVLVCGGTGCHSVGCQNTLQALQKAIDSQGLQD----TVKLVVTGCMGTCEMGPVITV 85

Query: 153 GKDTYE--DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
             D Y    + PE  EE++ +        ++ G  +DR+    A G
Sbjct: 86  FPDGYYYCRVQPEDAEELVTSH-------LKEGKYVDRLCYHTADG 124


>gi|295400339|ref|ZP_06810318.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111135|ref|YP_003989451.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
           Y4.1MC1]
 gi|294977614|gb|EFG53213.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216236|gb|ADP74840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 122

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 25/122 (20%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G + HV +C    CM +G E++    R +I    L    DG +      C G C +A +
Sbjct: 7   IGMKHHVLICNGGSCMRKGGEEVTLAIREEIASLEL----DGIVHTTRTRCNGRCQDACV 62

Query: 150 VMIGKDT--YEDLTPER--------------LEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           V++  +   Y  +TPE+              LEE+I     G+   + P P     S+AP
Sbjct: 63  VIVYPEGVWYNGMTPEKGREVVRRHLRDGEWLEEMITYRYEGRQGLVMPNP-----SAAP 117

Query: 194 AG 195
            G
Sbjct: 118 LG 119


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           HV VC  T C     E++I   R +I +  L      T+   +  C G C   P+V++  
Sbjct: 34  HVMVCAGTGCTSSNSEEIISRLRVQIEKHGLGE----TVKVVQTGCLGLCAKGPIVIVHP 89

Query: 155 D--TYEDLTPERLEEIIDAFSTG 175
           D   Y  +TPE + EI+++   G
Sbjct: 90  DDCMYTMVTPEDVSEIVESHLVG 112


>gi|325001506|ref|ZP_08122618.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1]
          Length = 118

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
            + EGW+S  A+  VA  L +    V  +ATFY  F + P   R  V VC    C
Sbjct: 63  HDAEGWLSEGALNHVARTLQVPPAEVYGVATFYAMFSVEPRAPRV-VHVCDDVAC 116


>gi|308068791|ref|YP_003870396.1| ferredoxin, 2Fe-2S [Paenibacillus polymyxa E681]
 gi|305858070|gb|ADM69858.1| Ferredoxin, 2Fe-2S (AaFd4) [Paenibacillus polymyxa E681]
          Length = 108

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+L P+  + HV VC    CM    E++ +  R++I ++    N++  +      C G C
Sbjct: 4   FELEPM--KHHVLVCNGGTCMRHEGEEVTQAIRDEIRKQ----NAEAYIHTTRTRCNGRC 57

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176
            +A +V++    D Y  +TP+   +++    TG+
Sbjct: 58  HDAAVVIVYPQGDWYGQMTPDSGTQLVQKLVTGE 91


>gi|294678553|ref|YP_003579168.1| NAD-dependent formate dehydrogenase subunit gamma [Rhodobacter
           capsulatus SB 1003]
 gi|294477373|gb|ADE86761.1| NAD-dependent formate dehydrogenase, gamma subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A++P+L   Q   G++   A   +A  L +    V  +  FY  F+ +P G R  +++
Sbjct: 18  EGALLPILHDVQAAFGFIPEDAYAPIAADLGLTRAEVAGVVGFYHDFRKAPAG-RHVIKL 76

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVNAPMVMI 152
           C    C   G    ++  + ++      R  D +  ++ E V C G C  AP  M+
Sbjct: 77  CRAEACQAMG----MDAVQARLESALGLRLGDSSEAVTLEAVYCLGLCACAPAAMV 128


>gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 562

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSW 135
           E+A   TQ +      R  + VC  + C+  G +KL+   R+++ Q+P +   +DG    
Sbjct: 6   ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLEQQPQISARADG---- 61

Query: 136 EEVECQGACVNAPMVMI 152
             V C G C   P+VM+
Sbjct: 62  --VGCMGLCSKGPLVMV 76


>gi|326386801|ref|ZP_08208421.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208720|gb|EGD59517.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q + G VS  A   +A  L+++   V  + +FY  F+ +P   R  V++
Sbjct: 18  EGPLLPILHDVQTEFGHVSPEAEGQIALALNLSRAEVHGVVSFYHDFREAP-DPRPCVEL 76

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C  RG E L+    +    +         +    V C G C   P   +G+  + 
Sbjct: 77  CRAEACQARGVEALVAAAEDAAGSR---------VRLATVYCLGLCSVGPSARVGERLHA 127

Query: 159 DLTPERLEEIIDA 171
            L  ++L ++I+A
Sbjct: 128 RLDADKLVKVIEA 140


>gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 530

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSW 135
           E+A   TQ +      R  + VC  + C+  G +KL+   R+++ Q+P +   +DG    
Sbjct: 6   ELAKIATQERRELAQYRHRIGVCTASGCLSCGSDKLLSSLRDQLAQQPQISARADG---- 61

Query: 136 EEVECQGACVNAPMVMI 152
             V C G C   P+VM+
Sbjct: 62  --VGCMGLCSKGPLVMV 76


>gi|237667145|ref|ZP_04527129.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237655493|gb|EEP53049.1| putative iron hydrogenase, gamma subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 94

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++ +Y  +R    +I ++   Q++  ++    +  +A  L ++  ++  +ATFY  F
Sbjct: 4   IDSILEKYDYNR--QLLIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENF 61

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
            L P G    +++C  T C +R    ++E
Sbjct: 62  SLKPKGKYV-IKICNGTACHVRKSIPILE 89


>gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 585

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 29/153 (18%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGT 92
           R +  +I  L   Q++ G +S   +  +A+ + M    V E ATFY  F +     PV  
Sbjct: 46  RERDELIEHLHALQDRFGHLSLRHLRALADWMRMPMAEVYETATFYAHFDVVREDEPVPP 105

Query: 93  RAHVQVCGTTPCMLRG-------CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              V+VC + PC L G        +  ++  R ++ + P               C G C 
Sbjct: 106 ALTVRVCDSLPCQLAGAQALRAALDAALDPARIRVLRAP---------------CMGRCD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            AP+  +G+      TP     ++ A + G  D
Sbjct: 151 QAPVAQLGRRHLSRATP---AAVLAALARGALD 180


>gi|294775627|ref|ZP_06741136.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450569|gb|EFG19060.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 80

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT F + P G +  + VC  T C LRG EKL E  +  +  +      DG    + 
Sbjct: 4   MVTFYTFFAMIPKG-KHPISVCMGTVCRLRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 62

Query: 138 VECQGACVNAPMVMI 152
           + C GA    P++MI
Sbjct: 63  LWCVGAYGLLPVIMI 77


>gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
 gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
          Length = 567

 Score = 39.3 bits (90), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA- 94
           SR    +I  L + Q++ G ++ + +  +A  + +A   V E+A+FY  F +   G  A 
Sbjct: 45  SRQADLLIEHLHKIQDKFGHLASSHLAALAQEMRLAQTEVYEVASFYHHFDIVKEGDAAP 104

Query: 95  ---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               V+VC    C + G + L+     KI  K +   +          C G C  AP+ +
Sbjct: 105 QALTVRVCDGLSCEMAGAKDLLAKL-PKILGKEVRVIA--------APCVGRCEQAPVAV 155

Query: 152 IGKDTYEDLTPERLEEIID 170
           +G++   + T E ++  ++
Sbjct: 156 VGQNPVINATCEAVQTAVE 174


>gi|300860741|ref|ZP_07106828.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|295112906|emb|CBL31543.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Enterococcus sp.
           7L76]
 gi|300849780|gb|EFK77530.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|315145700|gb|EFT89716.1| NAD-dependent formate dehydrogenase, gamma subunit family protein
           [Enterococcus faecalis TX2141]
 gi|315160213|gb|EFU04230.1| NAD-dependent formate dehydrogenase, gamma subunit family protein
           [Enterococcus faecalis TX0645]
          Length = 107

 Score = 39.3 bits (90), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
           P R  + +I L  +   +EG++ +   ++VA  L +   RV EI +FY   +  P   + 
Sbjct: 20  PQRILNILIEL--QFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEP-QAKY 76

Query: 95  HVQVCGTTPCMLRGCEKLIEV 115
            +++C +TPC   G   + EV
Sbjct: 77  VLKICNSTPCHYTGGAMVAEV 97


>gi|307331427|ref|ZP_07610545.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306882926|gb|EFN13994.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 319

 Score = 39.3 bits (90), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 44  PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTP 103
           P L    ++ GW+S   ++ +   L +       +ATFY  F + P      V VC    
Sbjct: 58  PGLHALNDRVGWISEGGLDYLCRRLTVPPAEGYGVATFYAMFAVKPRPATV-VHVCTDLA 116

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  RG  ++       +   P      G + W+   C G C  AP  +
Sbjct: 117 CAARGSARVCAELERDL--GPAGSAGSGAV-WQPSPCLGLCERAPAAL 161


>gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + HV VCG T C+  GC+  ++  +  I    L      T+      C G C   P++ +
Sbjct: 30  KYHVLVCGGTGCISIGCQNTLQAMQKAIEDHGLQE----TVKLVVTGCMGTCEMGPVITV 85

Query: 153 GKDTYE--DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
             + Y    + PE +EEI+ +        ++ G  ++R+    A G
Sbjct: 86  FPEGYYYCRVKPEDVEEIVTSH-------LKEGKFVERLCYHAADG 124


>gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [Nostoc sp. PCC 7120]
 gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P    A + VC  + C+ RG + L+    +++ +    R     ++ E   CQ  C +AP
Sbjct: 96  PAPPPAKIMVCQKSGCVKRGGDGLL----SELEKTLCDRGLLDKVTIEHTGCQKRCSSAP 151

Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTG 175
             ++M+GK  Y+ + PE +  +++ + TG
Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTG 180


>gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 626

 Score = 38.9 bits (89), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      V VC  
Sbjct: 56  LLPGLHAINDRVGWISEGALDYLCRRLTVPPAEGYGVATFYAMFSVRPRPATV-VHVCTD 114

Query: 102 TPCMLRGCEKLIEVCRN-KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C  RG     EVC   +           G + W+   C G C  AP  +
Sbjct: 115 LACAARGSA---EVCAGLERDLGAAGSARAGGVVWQPSPCLGLCERAPAAL 162


>gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina]
          Length = 610

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L+R Q++  +V  AA+E ++  LD+   +V     FY      P G    ++        
Sbjct: 31  LIRVQQRFSYVPDAAVEALSVALDVTRTQVRAAIAFYAFLHDRPRGA-FEIRFSDNITDR 89

Query: 106 LRGCEKLIEVCRNKIHQKPLHR------NSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
           + G  +LI +   ++    L          DG  S     C G C   P +++      +
Sbjct: 90  MLGSRRLIRLLIERLGLTGLPAWGRDLVRPDGRASVGLASCTGMCDQGPALLVNGQAVTN 149

Query: 160 LTPERLEEIIDAFSTG 175
           L  +R++ I D    G
Sbjct: 150 LDAQRVDRIADLVQEG 165


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C+  G +K+ E   +++ +    +N D  +   E  C G C   P++++
Sbjct: 5   RAHVLVCGGTGCVSSGSKKIQEALSDELAK----QNLDKEIKVVETGCHGFCEMGPILIV 60

Query: 153 GKDT--YEDLTPERLEEII 169
             +   Y  +T E ++EI+
Sbjct: 61  YPEGTFYCRVTVEDVQEIV 79


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           + V+VC  T C+  G  ++ E    +  ++ L    D     E   C G C   P+V+  
Sbjct: 24  SRVRVCAGTGCLAGGSARVKEAFEVEAARRGLALGVD--FRAETTGCHGFCEEGPLVVAE 81

Query: 153 -GKDTYEDLTPERLEEIIDAFSTG 175
            G   Y  +TP  + EI+DA ++G
Sbjct: 82  PGGILYRRVTPSDVPEILDALASG 105


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG------KDTYEDLTPERLEEIIDAFS 173
           IHQ+   RN +  +   EV C G C   P++M+       K  Y D+TPE++  I+ A +
Sbjct: 46  IHQEIAERNLENAIEVSEVGCMGLCHAEPVIMLADEATGEKLIYGDVTPEQVPAILAAGT 105

Query: 174 TGQGDTIRPG 183
           +    +I PG
Sbjct: 106 S----SIAPG 111


>gi|239826984|ref|YP_002949608.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
 gi|239807277|gb|ACS24342.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
          Length = 132

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G + HV +C    CM +G E++    R +I    L    DG +      C G C +A +
Sbjct: 7   IGMKHHVLICNGGSCMRKGGEEVTLAIREEIAMLEL----DGIVHTTRTRCNGRCQDACV 62

Query: 150 VMIGKDT--YEDLTPERLEEII 169
           V++  +   Y  +TPE+  E++
Sbjct: 63  VIVYPEGVWYNGVTPEKARELV 84


>gi|331092182|ref|ZP_08341012.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401954|gb|EGG81528.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 157

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  ++  L   Q+  G +   A   +  I+ M    + +I + Y    L+    +  + V
Sbjct: 28  QETLVQFLRETQDIFGCIPADAKMQIGEIMGMKPSLIDKIISMYPS--LTAEKFQTEIIV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C  +  +K++   +  +  +P     DG        C   C   P +MIG   Y 
Sbjct: 86  CSGASCSSKNAQKVLSEIQTLLQIRPGQVTKDGRYKLTAKPCMKQCKKGPNLMIGSTIYH 145

Query: 159 DLTPERLEEII 169
           ++  E+L+ ++
Sbjct: 146 NIDSEKLKTLL 156


>gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 603

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 7/153 (4%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RY  +R    ++ +L   Q   G +    +  VA  L+   + ++E A+FY  F  +P G
Sbjct: 13  RYDGTR----LLDILWDIQHLFGHIPDEHLPQVATALNRTVLDIVETASFYHFFHTTPSG 68

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + +  T    + G + + +    +   +    +  G     E  C G     P ++
Sbjct: 69  -RHRIYLSNTVIAKMNGYQAVHDALELETGARFGGTDEAGMFGLFETACIGLSDQEPAML 127

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ--GDTIRP 182
           +    +  LTP  + +I+     G+   D + P
Sbjct: 128 LDGVVFTRLTPGTVADIVAQLKAGRVAADIVNP 160


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +  + H+ VCG T C+    ++L E  +  + ++ L       LS     C G C   P+
Sbjct: 1   MAVKMHILVCGGTGCISSQSDRLAEALKEALAKRGLAEEVKVVLSG----CFGFCEQGPI 56

Query: 150 VMIGKDT--YEDLTPERLEEII 169
           V +  D   Y  +TPE  +EI+
Sbjct: 57  VKVAPDNTFYVKVTPEDADEIV 78


>gi|167761209|ref|ZP_02433336.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
 gi|167660875|gb|EDS05005.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
          Length = 155

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANI--LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           +I +L R QE  G+VS+   E VA +  ++  Y+     A       L     R  ++VC
Sbjct: 25  IIAMLTRIQETVGYVSKDVQEEVARLTGVNRGYV----AAIIKNLPHLHAQAFRHEIRVC 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            +  C  RG   L++  +  +  KP     DG        C   C++ P + I    YE+
Sbjct: 81  ISDRCKARGGSDLLKKLQKLLKIKPGQVTKDGVFLLNTEYCMHNCMHGPNIKIDGRIYEN 140

Query: 160 LTPERLEEIIDAF 172
           +   +L ++++  
Sbjct: 141 VQISQLPQLLEKL 153


>gi|220931056|ref|YP_002507964.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
 gi|219992366|gb|ACL68969.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
          Length = 80

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+VC  T C L G   +I+  +N      L  N    +  + V C  +C   P VM+   
Sbjct: 7   VEVCVGTSCHLMGSPAIIDYLKN------LPDNIKDKIEIKHVSCMNSCDRGPRVMVNDT 60

Query: 156 TYEDLTPERLEEII 169
              + TPER++E I
Sbjct: 61  VIYNATPERVKEAI 74


>gi|297190827|ref|ZP_06908225.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150630|gb|EFH30697.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 176

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ +   L +       +ATFY+ F + P   +  + VC  
Sbjct: 57  LLPALHAVNDRVGWLSEGALDYICRRLTVPPAEAYGVATFYSMFSVRPRPAKV-LHVCTD 115

Query: 102 TPCMLRG 108
             C  RG
Sbjct: 116 LACAARG 122


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score = 38.1 bits (87), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G ++LIE   N+I +  LH +++  +   +  C G C   P V+I
Sbjct: 5   RSHVLVCGGTGCTSSGAQQLIEALNNEIER--LHLSNE--VKVVQTGCLGLCERGPNVVI 60


>gi|22212574|dbj|BAC07503.1| NADH-ubiquinone oxidoreductase 24kDa subunit [Phanerochaete
           chrysosporium]
          Length = 56

 Score = 38.1 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           DLTPE  ++++DAF   +G+  +PGPQ  R +S  + GLT+L
Sbjct: 1   DLTPETTKKVLDAFK--KGEKPKPGPQSGRHTSENSAGLTAL 40


>gi|150002992|ref|YP_001297736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149931416|gb|ABR38114.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 77

 Score = 38.1 bits (87), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT F + P G +  + VC  T C +RG EKL E  +  +  +      DG    + 
Sbjct: 1   MVTFYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 59

Query: 138 VECQGACVNAPMVMI 152
           + C GA    P++MI
Sbjct: 60  LWCVGAYGLPPVIMI 74


>gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens
           PCA]
 gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens
           PCA]
 gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 570

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  TPC+  G   +++  R  + +  L    D  +      C G C   P+V +
Sbjct: 21  RCRIMVCAGTPCLSAGALAVLDALRQAVEESRL----DAEIEAVSTGCMGPCSRGPLVKV 76

Query: 153 ---GKD--TYEDLTPERLEEIIDAFSTGQ 176
              GK    YE +TPE   +I+ +   G+
Sbjct: 77  AVQGKPEIVYERVTPELARQILYSVVKGR 105


>gi|219848576|ref|YP_002463009.1| hypothetical protein Cagg_1672 [Chloroflexus aggregans DSM 9485]
 gi|219542835|gb|ACL24573.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 80

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 113 IEVCRNKIHQKP--------LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPER 164
           + VCR     +P        L  N  G L   E++C  AC + P VMI  D +  +TP++
Sbjct: 6   LTVCRLCARSRPDLWQTLARLRANHPGELRVVELDCMAACDDVPAVMIDFDYFPRVTPQQ 65

Query: 165 LEEII 169
           L E++
Sbjct: 66  LIELV 70


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 38.1 bits (87), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           +FQ +    +  + VCG T C+  GC+++++    K+ ++ L    D      E  C G 
Sbjct: 13  EFQENLENLKTRILVCGGTGCISCGCKQILD----KLKEELLINFLDDKFRLIETGCHGL 68

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIID 170
           C   P+V+I   K  Y ++  E ++E+++
Sbjct: 69  CEKGPIVIIYPEKTFYCNVQVEDIKELVE 97


>gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 572

 Score = 38.1 bits (87), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 66  NILDMAYIRVLEIATFYTQFQLSPV-GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           NI  +A +R         +    PV G   H  VCG T C+  GC+ +     ++I ++ 
Sbjct: 2   NITGLAELRAKAHEALRLRANERPVDGYEYHALVCGGTGCVSSGCKSVKSALVDEIRKQG 61

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169
           L    +  +   E  C G C   PM+ +  D   YE +T   +E ++
Sbjct: 62  L----EAKVRVIETGCLGPCNLGPMITVYPDGIFYEKVTAGDVESVV 104


>gi|226939219|ref|YP_002794290.1| hypothetical protein LHK_00286 [Laribacter hongkongensis HLHK9]
 gi|226714143|gb|ACO73281.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Laribacter hongkongensis HLHK9]
          Length = 288

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH-VQ 97
           + A++PLL   Q Q G++  AA+  +A  L  +   +  + +FY  F+ +P   RAH ++
Sbjct: 21  RGALLPLLHAIQAQFGYIPDAAVPRLAQALRQSRADIDGVISFYRDFRRTP--PRAHTLR 78

Query: 98  VCGTTPCMLRGCEKLIEV 115
           +C    C   G + L  +
Sbjct: 79  LCRAESCQAMGADTLAHL 96


>gi|31747591|gb|AAO38265.1| probable Fe-hydrogenase gamma subunit [Leptospirillum ferrooxidans]
          Length = 73

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           L++  + ++  +P     D   + E V C G+C  APM M+    Y  L+P+++  +I
Sbjct: 2   LVDKVKEELKIEPGENTEDMLFTLEPVSCLGSCALAPMAMVTDTAYGKLSPDKMLGLI 59


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C+  G  KL E  + ++ ++ L    D  +   +  C G C   P++++
Sbjct: 5   RSHVLVCGGTGCVSSGSAKLQEALQKELGKQGL----DKEILLVQTGCHGMCEAGPIMVV 60

Query: 153 GKDT--YEDLTPERLEEIID 170
             +   Y  + PE   EI++
Sbjct: 61  YPEGTFYTHVKPEDAAEIVE 80


>gi|212640009|ref|YP_002316529.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
 gi|212561489|gb|ACJ34544.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
          Length = 123

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C    CM +G E++ +  R++I +  LH +   T +     C G C +A +V
Sbjct: 11  GTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHTHVHTTRT----RCNGRCEDACVV 66

Query: 151 MI 152
           ++
Sbjct: 67  IV 68


>gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 607

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      + VC  
Sbjct: 55  LLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVKPRPATV-LHVCTD 113

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C   G  +L      ++            +S E   C G C  AP  +
Sbjct: 114 LACAASGAPELCAGIEARL-------GPGSGVSVERSPCLGLCERAPAAL 156


>gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus]
          Length = 604

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++ +I +L   Q   G +    +  +A+ L+++ + +LE A+FY  F   P G +  + +
Sbjct: 16  RTRLIDILWDVQHLYGHIPDEVLPQLADELNLSPLDILETASFYHFFHRKPSG-KYRIYL 74

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
             T    + G + + +    +   +    +  G     E  C G     P ++I    + 
Sbjct: 75  SDTVIAKMNGYQAVHDSLERETGARFGGTDKTGMFGLFETPCIGLSDQEPAMLIDNVVFT 134

Query: 159 DLTPERLEEIIDAFSTGQ 176
            L P  + +II     G+
Sbjct: 135 RLRPGTIVDIITQLRQGR 152


>gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Geobacter metallireducens GS-15]
          Length = 569

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  TPC+  G + +++  R  + +  L    +   S     C G C   P+V +
Sbjct: 21  RCRIMVCAGTPCLSAGAQTVLDSLRKALAESRLDAEIEAVASG----CMGPCSRGPLVKV 76

Query: 153 ---GKD--TYEDLTPERLEEIIDAFSTGQ 176
              GK    +E +TPE   +I+ + + G+
Sbjct: 77  RQQGKKEIIFERVTPELARQILLSLAKGR 105


>gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
 gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
          Length = 538

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + VC +T C+    ++++     ++ Q+ L       +  ++V C G C   P+V 
Sbjct: 20  VRYRIMVCSSTGCLSSRSDEILAALEAEVKQRGLENE----VLVKKVGCLGLCAAGPIVS 75

Query: 152 IGKD--TYEDLTPERLEEIID 170
           I  D   Y+++TPE +  I+D
Sbjct: 76  IQPDGILYKEMTPEDVPAILD 96


>gi|75910163|ref|YP_324459.1| hypothetical protein Ava_3959 [Anabaena variabilis ATCC 29413]
 gi|75703888|gb|ABA23564.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 188

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           Q  P    A + VC  + C+ RG E L+    +++ +    R     ++ E   CQ  C 
Sbjct: 93  QCLPSPPPAKIMVCQKSGCVKRGGEGLL----SELEKTLCDRGLLDKVTIEHTGCQKRCS 148

Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDAFST 174
           +AP  ++M+GK  Y+ + PE +  +++ + T
Sbjct: 149 SAPNCVLMLGKKKYKKIHPEAIASLLENYLT 179


>gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 176

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           +FQ +    +  + VCG T C+  GC++++    +K+ ++ L    D      E  C G 
Sbjct: 13  EFQENLENLKTRILVCGGTGCISCGCKQIL----DKLKEELLINFLDDKFRLIETGCHGL 68

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIID 170
           C   P+V+I   K  Y ++  E ++E+++
Sbjct: 69  CEKGPIVIIYPEKTFYCNVQVEDIKELVE 97


>gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
 gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
          Length = 565

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           ++IPLL   Q + GW+ R  +E +A         +  + +FY  F  +P      V+VC 
Sbjct: 22  SLIPLLNAIQARCGWLPREELEALARQQKRPLYEIEGLVSFYPHFLTAPP-KDVTVRVCR 80

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C L+G E        +  +          +   E+ C G C  AP   + +      
Sbjct: 81  DLACWLKGAEGPAAALTAQYAEAE-------DVEVLEISCPGRCDMAPAATVNEK----- 128

Query: 161 TPERLEEI 168
            P RLE++
Sbjct: 129 -PVRLEDV 135


>gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 641

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      + VC  
Sbjct: 55  LLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPATV-LHVCTD 113

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C   G  +L     +++            +  E   C G C  AP  +  +       
Sbjct: 114 LACTAAGAAELCADVESRL-------TPGSGVQVERSACLGLCERAPAALAIRAG----- 161

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
               E    AF     D  RPGP+    +  P  G      N   +RG+  +
Sbjct: 162 ----ETARPAFE----DEARPGPEGGPGAQPPGEG------NGKGRRGRTTQ 199


>gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
 gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
          Length = 657

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQ 97
           +I  L R  +  G +    +  +A  +++    V E+A+FY  F++         R  ++
Sbjct: 41  LIEYLHRINDHFGVLHDRHLVALAKQMNLPMAEVYEVASFYHHFEIVRGEGAQAPRLVLR 100

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           VC +  C + G  +L+     ++   PL       +  + V C G C  AP+ ++
Sbjct: 101 VCDSLSCSMAGARELLAALPERLRAMPLG-GGQCDVQVQAVPCVGRCEQAPVAVV 154


>gi|297831032|ref|XP_002883398.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329238|gb|EFH59657.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 103

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEV 63
          V E++S YP +  Q AVIPLL  AQ+Q  GW+  +A+ V
Sbjct: 1  VKEILSYYPSNYKQFAVIPLLDLAQQQHGGWLPVSAMNV 39


>gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
 gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
          Length = 626

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 18/149 (12%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V ++I   P  R    +I  L R  +Q   +    +  +A ++++    V E+ATFY  F
Sbjct: 44  VQQLIGAGPHRR--DLLIEHLHRINDQWHGLHERHLVALARLMNLPMAEVYEVATFYHHF 101

Query: 86  QL-----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           ++      P      V+VC +  C L G   L++     +  +         +      C
Sbjct: 102 EVLRDDAQPAAIT--VRVCDSLSCSLAGASDLLQRLPQLLGAE---------VRVMPTPC 150

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEII 169
            G C  AP+ ++G+      TP+ + E +
Sbjct: 151 VGRCEQAPVAVVGQWPVAHATPDAVRESV 179


>gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 580

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 17/130 (13%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH--------VQVCGT 101
           Q++ G ++   +  +A  L +A   V E+ATFY  F +       H        V+VC  
Sbjct: 57  QDRYGQLAMPHLVALAQELGLAMTEVYEVATFYHHFDVVREDADGHIAPPPALTVRVCEG 116

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C + G + LI+       + P    +D  +      C G C  AP V+ G+   +  T
Sbjct: 117 IACEMAGAQVLID-------KLPAVLGTD--VRVVAAPCIGRCEKAPAVLAGQKPVDGAT 167

Query: 162 PERLEEIIDA 171
            E +   + A
Sbjct: 168 VEAVASCVAA 177


>gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 569

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF---------QLSPVGTRAHVQVCG 100
            ++ G ++   +  +A+ L ++   V E+ATFY  F         Q++P      V+VC 
Sbjct: 57  NDRYGQLAMPHLVALASELRLSMTEVYEVATFYHHFDVVREDADGQIAPPPALT-VRVCE 115

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C L G + LI+       + P    ++  +      C G C  AP  ++G++  ++ 
Sbjct: 116 GIACELAGAQALID-------KLPALLGTE--VRVIAAPCIGRCEKAPAALVGQNPVDNA 166

Query: 161 TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
           T E +   ++A +        P P ID  +    GG   L
Sbjct: 167 TAETIGTAVEAKAVRHA----PEPHIDYDAYRRDGGYALL 202


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G ++++   R+++  + L    D  +S  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSQQIMVKLRDELKGQGL----DQEVSVVQTGCHGLCALGPIMII 58

Query: 153 GKDT--YEDLTPERLEEII 169
             D   Y  +  E + EI+
Sbjct: 59  YPDATFYAMVKEEDISEIV 77


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ VCG T C+    + L +  ++ + ++ L       LS     C G C   P+V +
Sbjct: 5   KMHILVCGGTGCISSQSDVLAQALKDALKEQGLENEVKVVLSG----CFGFCEQGPIVKV 60

Query: 153 GKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
             D   Y  +TPE   EI+        + I  G ++DR+
Sbjct: 61  APDNTFYVKVTPEDAGEIV-------AEHIVKGRKVDRL 92


>gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 306

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A+  +   L +       +ATFY  F L P      + VC  
Sbjct: 52  LLPGLHAVNDRVGWISEGALNYLCRRLTVPPAEAYGVATFYAMFSLRPRPATV-LHVCTD 110

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C   G   L      ++            ++ E   C G C  AP  +
Sbjct: 111 LACAAAGAGDLCAGVEARL-------GPGSGVAVERSPCLGLCERAPAAL 153


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T   + +C    C+  G E + +V   KI +     N   T++  E  C GAC   P+++
Sbjct: 4   TTNTILICAGGACISAGEESVKDVLERKIKE----YNLQDTINIVETGCMGACSLGPIMV 59

Query: 152 IGKDT--YEDLTPERLEEIID 170
           I  +   Y+ LTPE  E+I++
Sbjct: 60  IHPEGVYYQKLTPEAAEKIVE 80


>gi|254883634|ref|ZP_05256344.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
 gi|319642295|ref|ZP_07996954.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
 gi|254836427|gb|EET16736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
 gi|317386151|gb|EFV67071.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
          Length = 80

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + T+YT F + P G +  + VC  T C +RG EKL E  +  +  +      DG    + 
Sbjct: 4   MVTYYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDC 62

Query: 138 VECQGACVNAPMVMI 152
           + C GA    P++MI
Sbjct: 63  LWCVGAYGLPPVIMI 77


>gi|312881026|ref|ZP_07740826.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
 gi|310784317|gb|EFQ24715.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
          Length = 94

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C  + C  RG +K +EV R  +     HR  D  +S     C+GAC   P +
Sbjct: 15  GERVVLTLCMGSSCFARGNQKNLEVIRQFLKD---HRMED-RVSLVGSRCEGACTQGPNL 70

Query: 151 MIGKDTYEDLTPERLEEIID 170
            IG   +  +  E L  +++
Sbjct: 71  RIGDRLFPRINQEDLPALLE 90


>gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
 gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 595

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL-----SPVGTRAHV 96
           +I  L   Q+ +G +S   +  +A  +++    V E ATFY  F +     SP      V
Sbjct: 71  LIEHLHTIQDAQGHLSLVMLRALATYMNLPMAAVYETATFYAHFDVVHDDQSPP-PEVTV 129

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC +  C L G E L       +  +         +      C G C  AP+V +G   
Sbjct: 130 RVCDSLSCRLAGAEALKAKLAAGVDPE--------AVRVVRAPCMGRCDTAPVVEVGHHH 181

Query: 157 YEDLTPERLEEIID 170
               T E +  +ID
Sbjct: 182 VRFATHEGVASVID 195


>gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus
           str. Bath]
 gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus
           str. Bath]
          Length = 610

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +N ++  +   R    ++ +L   Q +   VS  A + VA  L +   +V  +  FY+  
Sbjct: 11  INRIVENH--GRDTRQLLSILREVQHEFRQVSPEAQQKVAESLGVCITQVRAVVDFYSFL 68

Query: 86  QLSPVGTRAHVQVCGT-TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
              P+G +  +++  + T  ML   E    +CR K+  +P     DG +      C G C
Sbjct: 69  STVPLG-KFDIRISDSITDHMLGSREVAAGLCR-KLGIQPGEPRQDGRVGLSFTSCTGLC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEI 168
              P  +I       LT +R ++I
Sbjct: 127 DQGPAGLINGYAIPRLTEDRTDQI 150


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G + +     N+I +  L    D  ++     C G C   P+V+I
Sbjct: 4   RSHVMVCGGTGCTSSGSDNVAAAFVNEIKKAGL----DKEVAVIRTGCFGLCELGPVVVI 59

Query: 153 GKDT--YEDLTPERLEEIID 170
             +   Y  + PE + EI++
Sbjct: 60  YPEGVFYSKMKPEYVPEIVE 79


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P+ T   + +C    C+  G E + +V   KI +  L      T++  E  C GAC   P
Sbjct: 2   PLATNT-ILICAGGACISAGEESVKDVLERKIKEYNLQE----TVNIVETGCMGACSLGP 56

Query: 149 MVMIGKDT--YEDLTPERLEEIID 170
           +++I  +   Y+ LTPE  E+I++
Sbjct: 57  IMVIHPEGVYYQKLTPEAAEKIVE 80


>gi|163846740|ref|YP_001634784.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
 gi|222524552|ref|YP_002569023.1| hypothetical protein Chy400_1276 [Chloroflexus sp. Y-400-fl]
 gi|163668029|gb|ABY34395.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
 gi|222448431|gb|ACM52697.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 82

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           L     G L   E++C  AC + P VM+  D +  +TP++L EI+++
Sbjct: 26  LRTAYSGALCIVELDCMAACDDVPAVMLEYDYFPRVTPQQLIEIVES 72


>gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 541

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + ++ VC  T C+  G E ++   ++++     + N + T+  ++  C G C   P+V+I
Sbjct: 4   KHNIIVCQGTGCISGGSEAILSALQDEVK----NNNLEDTVLVKQTGCHGFCQRGPLVVI 59

Query: 153 GKDT--YEDLTPERLEEIIDAFSTG 175
             +   Y  +TPE + EI  +   G
Sbjct: 60  EPEELFYSHVTPEDIPEIAQSLKDG 84


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + +C  T C   G  KL++  RN++ ++ L    D  +  +E  C G C    +V+
Sbjct: 25  NRLCITICCGTGCRALGSVKLVDAFRNELAKQEL----DNQVDIKETGCHGFCEKGSVVV 80

Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
           I      Y  + PE   +I+D        TI+ G  ++R + + PA G
Sbjct: 81  IYPQNICYFHVKPEDAADIVDK-------TIKNGALVERLLYTDPATG 121


>gi|163784146|ref|ZP_02179087.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880590|gb|EDP74153.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
          Length = 112

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP L   QE    +   AI  ++  L +    +  I +FY  F+      + H+++
Sbjct: 25  EQAIIPSLHTIQETYRDIPDEAIRELSEYLQVPEADIEGIVSFYDMFRFEK-KAKNHIRL 83

Query: 99  CGTTPCMLRGCEKLIEV 115
           C   PC L G  K +++
Sbjct: 84  CRNLPCHLAGSRKFLKM 100


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  T C+  G  K+ +  +++I  + L    +GT+S +   CQG C   P+V+I  +
Sbjct: 34  ITICCGTGCLAYGASKIGQSFKDEIKNQGL----EGTVSVKFTGCQGFCERGPLVVIRPE 89

Query: 156 T--YEDLTPERLEEII 169
              Y+ + PE +  I+
Sbjct: 90  NILYQRVKPEDVSRIV 105


>gi|295704477|ref|YP_003597552.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
 gi|294802136|gb|ADF39202.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
          Length = 130

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+ HV +C  + C   G E++ +  R++I  + L    D  +      C G C +  +V+
Sbjct: 9   TKHHVLICNGSSCNRFGAEEVTQAIRSEIANQEL----DPYIHTTRTRCNGRCHDKCVVI 64

Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
              D   Y+D+ P+  +E+I++    Q       P +++IS
Sbjct: 65  SYPDGIWYKDVKPQDAQELINSLKKDQ-------PFVEKIS 98


>gi|226312181|ref|YP_002772075.1| 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
 gi|226095129|dbj|BAH43571.1| putative 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
          Length = 125

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+ HV +C    CM +G E++    R  I +  L    D  +      C G C +A +++
Sbjct: 9   TKHHVLICNGGSCMRKGGEEVTVAIREAITESGL----DDYVHTTRTRCNGRCEDACVMI 64

Query: 152 IGKDT--YEDLTPERLEEII-DAFSTGQ 176
           +  +   YE++TPE  ++++ + F  G+
Sbjct: 65  VYPEGIWYENVTPEDAQKLVEEHFQNGR 92


>gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas
           sp. 3As]
          Length = 597

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP S + +E     V ++I   P  R    +I  L    +Q   +    +  +A ++++ 
Sbjct: 35  QPESQALAE-----VQQLIGAGPHRR--DLLIEHLHLINDQWHGLHERHLVALARLMNLP 87

Query: 72  YIRVLEIATFYTQFQL-----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
              V E+ATFY  F++      P      V+VC +  C L G   L++     +  +   
Sbjct: 88  MAEVYEVATFYHHFEVLRDDAQPAAIT--VRVCDSLSCSLAGANDLLQRLPQLLGAE--- 142

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
                 +      C G C  AP+ ++G+      TP+ + E +
Sbjct: 143 ------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDTVRESV 179


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G  +++E  + +I +  L       +S  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSLQIMETLKAEIDKNGLSEE----VSVVQTGCHGLCALGPIMII 58

Query: 153 GKDT--YEDLTPERLEEII 169
             D   Y  +  E + EI+
Sbjct: 59  YPDATFYAMVKNEDIPEIV 77


>gi|317127563|ref|YP_004093845.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
           2522]
 gi|315472511|gb|ADU29114.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
           2522]
          Length = 133

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T  H+ +C    CM  G E+L++  RN+I +  +H+     +      C G C +  +++
Sbjct: 9   TEHHLLICNGGSCMKAGAEELVQAVRNEIGKMDVHKR----VHTSRTLCNGRCHDKCVLI 64

Query: 152 IGKDT--YEDLTPERLEEIIDAFSTGQ 176
              D   Y+ +T      +I++  TG+
Sbjct: 65  SYPDGYWYKGMTSADASNLIESLLTGK 91


>gi|52080317|ref|YP_079108.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
 gi|52785692|ref|YP_091521.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52003528|gb|AAU23470.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
 gi|52348194|gb|AAU40828.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
           licheniformis ATCC 14580]
          Length = 128

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VM 151
           + H+ +C  + C   G E+L +V R +I  + L    D  +      C G C +  + + 
Sbjct: 10  KHHIFICNGSSCNRAGAEELTQVIRQEISDREL----DDFIHTTRTRCNGRCQDKCVAIH 65

Query: 152 IGKDT-YEDLTPERLEEIIDAFSTGQ-----GDTIRPGPQIDRISSAPAG 195
             + T Y DL PE +  +ID+  T +        +  G + +R S   +G
Sbjct: 66  YPRGTWYRDLKPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVISG 115


>gi|328951489|ref|YP_004368824.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
 gi|328451813|gb|AEB12714.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
          Length = 105

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMV 150
           TRAH+ +C    C  RG + +     + + ++ L +  + GTL   E  C GAC   P++
Sbjct: 8   TRAHLLLCTGPRCRARGADTVFRYLWDALEREGLAYYKTGGTLRLTESSCLGACCCGPIL 67

Query: 151 M 151
           +
Sbjct: 68  L 68


>gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 607

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++P L    ++ GW+S  A++ +   L +       +ATFY+ F + P      + VC  
Sbjct: 55  LLPGLHAVNDRIGWISEGALDYLCRRLTVPPAEAYGVATFYSMFAVKPRPATV-LHVCTD 113

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             C   G  +L      ++            +  E   C G C  AP  +
Sbjct: 114 LACASAGAAELCAGVEARL-------GPGSGVGVERGPCLGLCERAPAAL 156


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C   G +K++E  + +I++  L      +++     C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSAGSDKIVENLKEEINKLGLQEEVKVSITG----CFGFCEKGPIVKINPD 98

Query: 156 T--YEDLTPERLEEI 168
              Y  +TPE  +EI
Sbjct: 99  NVFYVKVTPEDAKEI 113


>gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 688

 Score = 35.4 bits (80), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  VQVC  T C LRG + ++      I ++ L    D   S+    C   C + P V I
Sbjct: 591 RLRVQVCLGTSCHLRGAQDILTGLLGHIAEQGLTNAVDVRASF----CHEKCADGPTVQI 646

Query: 153 GKDTYEDLTPERLEEIIDA 171
             D     T E +   +DA
Sbjct: 647 NGDVMTHCTLESVIAALDA 665


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score = 35.4 bits (80), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R HV VCG T C   G +K+IE    K+H++    + +  +   +  C G C   P++++
Sbjct: 34  RKHVLVCGGTGCTSSGSKKIIE----KLHEEIRKNSLENEIGVVKTGCFGLCALGPIMIV 89


>gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
          Length = 561

 Score = 35.4 bits (80), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 18/148 (12%)

Query: 34  PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL------ 87
           P  R +  +I  L   Q++ G++S A +  +A  L +    V E+A+FY  F L      
Sbjct: 40  PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQAEVWEVASFYAHFDLVKEDEL 99

Query: 88  -SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P  T   ++VC +  C               +            +      C G C  
Sbjct: 100 PPPALT---IRVCESLSCE--------LAGAEALLAALEEGLDPAEVRVLRAPCMGRCDT 148

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
           AP++ +G    +  TPE     ++A  T
Sbjct: 149 APVLELGHRHIDHATPETARAAVEAGET 176


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score = 35.4 bits (80), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           + VC  T C  +G  K+          RN + Q  L +  D  ++     C G C + P+
Sbjct: 28  IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
           V I   +  Y ++ PE + EI+D        T+  G  I+R+
Sbjct: 88  VKIMPYRFFYSNVAPEDVPEIVD-------RTVLKGEPIERL 122


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score = 35.4 bits (80), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           + VC  T C  +G  K+          RN + Q  L +  D  ++     C G C + P+
Sbjct: 28  IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
           V I   +  Y ++ PE + EI+D        T+  G  I+R+
Sbjct: 88  VKIMPYRFFYSNVVPEDVPEIVD-------RTVLKGEPIERL 122


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 35.4 bits (80), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH---RNSDGTLS--WEEVECQGACVNAPMV 150
           + VCG T C+  G  +++E  + ++  K L+   + +DG       +  CQG C   P+V
Sbjct: 24  IIVCGGTGCIAGGSLEVLEAFKKELSAKGLNVCTQITDGCRGTYLSKSGCQGFCAAGPLV 83

Query: 151 MIGKDTYEDLTPERLEEIID 170
            +G   Y  +    + EI++
Sbjct: 84  SVGDIFYTKVKESDVSEIVE 103


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score = 35.4 bits (80), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           + VC  T C  +G  K+          RN + Q  L +  D  ++     C G C + P+
Sbjct: 28  IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
           V I   +  Y ++ PE + EI+D        T+  G  I+R+
Sbjct: 88  VKIMPYRFFYSNVVPEDVPEIVD-------RTVLKGEPIERL 122


>gi|319645903|ref|ZP_08000133.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
 gi|317391653|gb|EFV72450.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
          Length = 128

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM-VM 151
           + H+ +C  T C   G E+L +V   +I ++ L    D  +      C G C +  + + 
Sbjct: 10  KHHIFICNGTSCNRAGAEELTQVILQEISEREL----DDVIHTTRTRCNGRCQDKCVAIH 65

Query: 152 IGKDT-YEDLTPERLEEIIDAFSTGQ-----GDTIRPGPQIDRISSAPAG 195
             + T Y DL PE +  +ID+  T +        +  G + +R S   +G
Sbjct: 66  YPRGTWYRDLIPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVISG 115


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +CG T C   GC+++    ++K +++    N    +      C G C   P+V++
Sbjct: 5   RSHVLICGGTGCSSSGCQQV----QDKFNEELDKHNLSNEVKLIITGCHGLCELGPIVIV 60

Query: 153 GKD--TYEDLTPERLEEIID 170
             +  +Y  ++ E + EI++
Sbjct: 61  YPEGTSYFTVSAEDVSEIVE 80


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVC------RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           + VC  T C  +G  K+          RN + Q  L +  D  ++     C G C + P+
Sbjct: 28  IYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGCCGRCSSGPL 87

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
           V I   +  Y ++ PE + EI+D        T+  G  I+R+
Sbjct: 88  VKIMPYRFFYSNVAPEDVPEIVD-------RTVLKGEPIERL 122


>gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 569

 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF---------QLSPVGTRAHVQVCG 100
            ++ G ++   +  +A+ L ++   V E+ATFY  F         Q++P      V+VC 
Sbjct: 57  NDRYGQLAMPHLVALASELRLSMTEVYEVATFYHHFDVVREDADGQIAPPPALT-VRVCE 115

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C L G + LI+       + P    ++  +      C G C  AP  ++G++  +  
Sbjct: 116 GIACELAGAQALID-------KLPALLGTE--VRVVAAPCIGRCEKAPAALVGQNPVDTA 166

Query: 161 TPERLEEIIDA 171
           T E ++  + A
Sbjct: 167 TAEAIDAAVQA 177


>gi|89899956|ref|YP_522427.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118]
 gi|89344693|gb|ABD68896.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118]
          Length = 103

 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 36 SRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
          SRC+S    ++ +L   QE  GW+ RA + V A  L +    V     FY  F   PVG
Sbjct: 15 SRCESDPHTLVQILRETQELAGWLFRAVLGVGARELTLNLAHVEVAVGFYRFFHTRPVG 73


>gi|225407903|ref|ZP_03761092.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
           DSM 15981]
 gi|225042582|gb|EEG52828.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
           DSM 15981]
          Length = 158

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            S + ++ + + E++  Y        Q  V+ +L   Q+ +G++S   +   A    +  
Sbjct: 3   HSETRDTEVQIREILDYYGGREDRASQETVVEMLRELQDAQGFLSPGILAAAAETAGVKE 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  I       + +P   R  + VC    C  R  E L E+ R ++   P   ++DG 
Sbjct: 63  STVRAILKRCPSLKTAPY--RHEIVVCLGKNCGGRNIEVLQEL-RRRLKTGPDGISADGR 119

Query: 133 LSWEEVECQGACVNAPMVMI 152
           +      C  +C  AP VM+
Sbjct: 120 VKVSTRSCLKSCRTAPNVMV 139


>gi|167816878|ref|ZP_02448558.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 91]
          Length = 92

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV-- 98
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P    AHV +  
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAP---PAHVTIRL 77

Query: 99  CGTTPCMLRGCEKLI 113
           C    C   G E L+
Sbjct: 78  CRAEACRSMGGEALV 92


>gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score = 35.0 bits (79), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++A I+     T   ++    V  +AH+ VCG   C+   C ++++  R  + +     +
Sbjct: 6   ELAIIKESAQETLQIRYGKPGVLHKAHIMVCGGQGCISSKCAEVVDAIREALKKHNFSDH 65

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEII 169
               L+     C G C   P+ ++  D   Y  L P+  E I+
Sbjct: 66  VKVVLTG----CMGPCDMGPVAVVFPDAVFYRRLKPKDAEAIV 104


>gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246]
          Length = 686

 Score = 35.0 bits (79), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT-RAHVQVCG 100
           ++  L   Q + G++    +  +A+ +++   R+ E+++F+  F+L         ++VC 
Sbjct: 2   IVQRLRDIQNRFGFLPDKELRALAHEINVPLYRIEEVSSFFPAFKLERTNPPEIEMRVCR 61

Query: 101 TTPCMLRGCEKLI-EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
              C  RG   L+ E     +    L   +  ++  E V C G C  AP V + K
Sbjct: 62  DLTCHHRGAAALLDERTGLPVLAAELSEATGKSVCVEGVSCLGRCDRAPAVWVEK 116


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQ 141
           +G +  V +C  T C+  G  K+    + ++ +K L          ++ G  ++    CQ
Sbjct: 15  MGAQRRVVICAGTGCVANGAMKVHAAFQQRMAEKNLPFVLELREENDNSGKTAFTRSGCQ 74

Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQG 177
           G C   P+V +  +   Y  + P  ++EII+    G G
Sbjct: 75  GFCQMGPLVTVLPENILYTQVKPADIDEIIETSLIGGG 112


>gi|56420345|ref|YP_147663.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
 gi|56380187|dbj|BAD76095.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
          Length = 132

 Score = 35.0 bits (79), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + HV +C    C+  G + +    R +I +  L    D  +      C G C +A ++
Sbjct: 8   GMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGL----DDAVHTTRTRCNGRCQDACVM 63

Query: 151 MIGKDT--YEDLTPERLEEIIDAFSTGQGDTIR 181
           ++      Y  +TPER +E++ A   G+G  +R
Sbjct: 64  IVYPQGIWYRQMTPERAKEVVRAH-LGEGVPMR 95


>gi|170087016|ref|XP_001874731.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649931|gb|EDR14172.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 2813

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 10   EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA---------- 59
            E  PSS S  EE A+  +E + + PP    + +  +   A+E  G  +RA          
Sbjct: 915  EMLPSSRSHGEEQALESHEFLDKMPPIEVFAGLDAVQSSAEEVPGLATRAELQQWLAEHD 974

Query: 60   AIEVVANILDMAYIRVL-EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             IE    I D   ++ L ++    TQ  LSP  T     V   T   +   +KL+ + R+
Sbjct: 975  TIEKETEIFDTGELKKLRQLTKAATQRNLSPQDT----DVIELTLTTIYELDKLLHLLRD 1030

Query: 119  KIHQKPLHRNSDGTLSWEE 137
            +     L       L+WEE
Sbjct: 1031 RSEHLEL---LSVRLTWEE 1046


>gi|309389843|gb|ADO77723.1| NADH-quinone oxidoreductase chain E [Halanaerobium praevalens DSM
           2228]
          Length = 79

 Score = 34.7 bits (78), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC-QGACVNAPMVMIGK 154
           +++C  TPC L G   L+E        + L  +    +  +   C    C  AP++    
Sbjct: 6   LKICIGTPCHLMGAADLLEA------VEELDLDLKNQIEIKTTHCIDNCCDKAPVIKFNG 59

Query: 155 DTYEDLTPERLEEII 169
             Y+DL PE+L +II
Sbjct: 60  KIYQDLNPEKLYKII 74


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 17/103 (16%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C   G   +++  ++++ +    +N D  +   +  C G C   P+V++
Sbjct: 3   RAHVLVCGGTGCTSSGSHGVMDGLKSELKK----QNLDDEVLVVQTGCHGMCEMGPIVVV 58

Query: 153 GKD------TYEDLTPERLEE-------IIDAFSTGQGDTIRP 182
             +        +D  PE +EE       +     TG+GD   P
Sbjct: 59  YPEGTFYCRVSKDDVPELVEEHLLKGRTVDRLLYTGEGDVHVP 101


>gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
 gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
          Length = 546

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----CQGACVNAPMVMIGKDT-- 156
           C   GCE    +   K  QK +    +G L  E+VE     C G C   P+V I  +   
Sbjct: 25  CTSTGCEAANSLTVKKNLQKAV---KEGHLE-EQVEIIGVGCMGFCGKGPLVQIDPENTL 80

Query: 157 YEDLTPERLEEIIDAFSTG-----QGDTIRP 182
           YE++TPE+   II+  + G     QGD   P
Sbjct: 81  YEEVTPEQAASIIEGINGGTCNVTQGDINHP 111


>gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 552

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150
           R  +  C +TPC+  G   + E  +  I  + L    +   +     C G C   P++  
Sbjct: 21  RCRLLCCASTPCISSGGTAVYEAVKQAIEAEGLQAEVEAVATG----CVGPCSRGPLITV 76

Query: 151 -MIGKD--TYEDLTPERLEEIID 170
            M G++   YE +TPE    I+D
Sbjct: 77  KMEGREDVVYEQVTPEMAARILD 99


>gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Acidovorax ebreus TPSY]
 gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax ebreus TPSY]
          Length = 661

 Score = 34.7 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 12/144 (8%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP + + +E   +    + +R P    +  +I  L    ++ G +    +  +A ++++ 
Sbjct: 32  QPEASALAEVQTL----IGARPPEGYARDRLIEHLHLINDRHGALYERHLVALARLMNLP 87

Query: 72  YIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
              V E+A+FY  F++   +    R  ++VC    C + G + L+     +     L   
Sbjct: 88  MAEVYEVASFYHHFEVLRDADGPPRLVLRVCNGLSCCMAGADALLAELPGR-----LSAA 142

Query: 129 SDGTLSWEEVECQGACVNAPMVMI 152
             G +  +   C G C  AP+ ++
Sbjct: 143 GHGDVRVQAAPCVGRCEQAPVAVV 166


Searching..................................................done


Results from round 2




>gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040533|gb|ACT57329.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 218

 Score =  338 bits (868), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA
Sbjct: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI
Sbjct: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI
Sbjct: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS
Sbjct: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218


>gi|224046085|ref|XP_002190748.1| PREDICTED: putative NADH dehydrogenase flavoprotein 2 [Taeniopygia
           guttata]
 gi|197128368|gb|ACH44866.1| putative NADH dehydrogenase flavoprotein 2 [Taeniopygia guttata]
          Length = 244

 Score =  325 bits (834), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +I+ YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 33  LFVHRDSPENNPDTPFEFTPENLKRIEAIINNYPEGHKSAAVMAVLDLAQRQHGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 93  MNKVAEVLEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 152 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +DD
Sbjct: 210 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRDD 243


>gi|118086790|ref|XP_001232141.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) isoform 1 [Gallus gallus]
 gi|118086792|ref|XP_424129.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) isoform 2 [Gallus gallus]
          Length = 245

 Score =  324 bits (831), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +IS YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 34  LFVHRDSPENNPDTPFEFTPENKKRIEAIISNYPGGHKSAAVMAVLDLAQRQHGWLPISA 93

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 94  MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 152

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 153 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 210

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   + D
Sbjct: 211 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 244


>gi|73962198|ref|XP_537328.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2, 24kDa [Canis familiaris]
          Length = 249

 Score =  323 bits (830), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/213 (41%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  +I  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIIKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
           +PGP+  R S  PAGGLTSL +   K  G   +
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQ 246


>gi|332225897|ref|XP_003262121.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Nomascus leucogenys]
          Length = 249

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|291394118|ref|XP_002713628.1| PREDICTED: NADH dehydrogenase ubiquinone flavoprotein 2
           [Oryctolagus cuniculus]
          Length = 249

 Score =  323 bits (828), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|301764419|ref|XP_002917633.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 249

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|109121568|ref|XP_001099724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Macaca mulatta]
          Length = 249

 Score =  322 bits (827), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|27807025|ref|NP_776990.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
 gi|128865|sp|P04394|NDUV2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH dehydrogenase subunit
           II; AltName: Full=NADH-ubiquinone oxidoreductase 24 kDa
           subunit; Flags: Precursor
 gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa subunit [Bos taurus]
 gi|74268334|gb|AAI02402.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Bos taurus]
 gi|296473660|gb|DAA15775.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Bos taurus]
          Length = 249

 Score =  322 bits (826), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|194678241|ref|XP_001250335.2| PREDICTED: NADH dehydrogenase-like [Bos taurus]
          Length = 254

 Score =  322 bits (825), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 43  LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 102

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 103 MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 161

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 162 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 219

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 220 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 253


>gi|296222243|ref|XP_002757104.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Callithrix jacchus]
          Length = 249

 Score =  321 bits (824), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|164612465|gb|ABY63629.1| NADH dehydrogenase flavoprotein 2, 24kDa (predicted) [Papio anubis]
          Length = 451

 Score =  321 bits (824), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 204 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 263

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 264 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 322

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 323 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 380

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           +PGP+  R S  PAGGLTSL +    
Sbjct: 381 KPGPRSGRFSCEPAGGLTSLTEPPKG 406


>gi|109098294|ref|XP_001108313.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Macaca mulatta]
          Length = 249

 Score =  321 bits (823), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCML   + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLGNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|115502496|sp|Q0MQI8|NDUV2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|115502498|sp|Q0MQI7|NDUV2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661782|gb|ABH12155.1| mitochondrial complex I subunit NDUFV2 [Gorilla gorilla]
 gi|111661784|gb|ABH12156.1| mitochondrial complex I subunit NDUFV2 [Pongo pygmaeus]
          Length = 249

 Score =  320 bits (821), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|115392045|ref|NP_001065254.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Pan troglodytes]
 gi|115502497|sp|Q0MQI9|NDUV2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|111661780|gb|ABH12154.1| mitochondrial complex I subunit NDUFV2 [Pan troglodytes]
          Length = 249

 Score =  320 bits (821), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|222080062|ref|NP_066552.2| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Homo sapiens]
 gi|20455499|sp|P19404|NDUV2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|12804451|gb|AAH01632.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|17028359|gb|AAH17487.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|123984347|gb|ABM83519.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|123998275|gb|ABM86739.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
 gi|307684502|dbj|BAJ20291.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [synthetic
           construct]
          Length = 249

 Score =  320 bits (821), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|326917467|ref|XP_003205020.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Meleagris gallopavo]
          Length = 243

 Score =  320 bits (821), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 124/215 (57%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F+ E+   +  +I  YP     +AV+ +L  AQ Q GW+  +A
Sbjct: 32  LFVHRDSPENNPDTPFEFTPENKKRIEAIIGNYPGGHKSAAVMAVLDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 92  MNKVAEILEMPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIKKKL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    
Sbjct: 151 GIEVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VP 208

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   + D
Sbjct: 209 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVRAD 242


>gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase [Homo sapiens]
 gi|48735289|gb|AAH71689.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|119622017|gb|EAX01612.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Homo
           sapiens]
 gi|189053259|dbj|BAG35065.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|1364245|emb|CAA32848.1| NADH dehydrogenase 24 kDa subunit (AA 6-217) [Bos taurus]
          Length = 212

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 1   LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 61  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 119

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 120 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 177

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 178 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 211


>gi|297702228|ref|XP_002828088.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Pongo abelii]
          Length = 249

 Score =  320 bits (820), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKIGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|62857879|ref|NP_001017166.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Xenopus
           (Silurana) tropicalis]
 gi|89272040|emb|CAJ83184.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Xenopus (Silurana)
           tropicalis]
 gi|134025998|gb|AAI35379.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Xenopus
           (Silurana) tropicalis]
          Length = 243

 Score =  319 bits (819), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/214 (42%), Positives = 117/214 (54%), Gaps = 4/214 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
            V R   E    + F F+ E+   +  +I  YP      AVIP+L  AQ Q GW+  +A+
Sbjct: 33  FVHRDTPENNPDTPFEFTSENYKRIEAIIGNYPEGHKAGAVIPVLDLAQRQHGWLPISAM 92

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA +L+M  +RV E+ATFYT F   PVG + HVQ+C TTPCML   + ++E    K+ 
Sbjct: 93  NKVAEVLEMPAMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCMLCNSDSILEAIEKKLG 151

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                  SD   +  EVEC GACVNAPMV I  + YEDLTP+ +E IID    G+     
Sbjct: 152 IHVGETTSDKLFTLTEVECLGACVNAPMVQINDNYYEDLTPKDIENIIDELKAGK--VPT 209

Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PGP+  R S  PAGGLTSL     K  G   + D
Sbjct: 210 PGPRNGRFSCEPAGGLTSLT-GPPKGPGFGVRAD 242


>gi|194214480|ref|XP_001489155.2| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Equus caballus]
          Length = 246

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 35  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPILDLAQRQNGWLPISA 94

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 95  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 153

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIIDA   G     
Sbjct: 154 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDALKAG--TIP 211

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 212 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGLQAG 245


>gi|319146358|ref|NP_001188137.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
 gi|308323143|gb|ADO28708.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 2
           [Ictalurus punctatus]
          Length = 244

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 4/214 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
            V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+
Sbjct: 34  FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA ILD++ +RV E+ATFYT F   PVG + H+Q+C TTPCML   + +++  +NK+ 
Sbjct: 94  NKVAEILDVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLG 152

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            K     +DG  +  EVEC GACVNAPMV I  + YEDL P  +E IID    G+     
Sbjct: 153 IKVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPP 210

Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 211 PGPRNGRFSCEPAGGLTSLTE-PPPGPGFGVRAD 243


>gi|158257162|dbj|BAF84554.1| unnamed protein product [Homo sapiens]
          Length = 249

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           +PGP+  R S  PAGGLTSL +    
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTEPPKG 240


>gi|148706375|gb|EDL38322.1| mCG9061, isoform CRA_c [Mus musculus]
          Length = 259

 Score =  318 bits (817), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 48  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 224

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G   +  
Sbjct: 225 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 258


>gi|51092268|ref|NP_112326.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Rattus norvegicus]
 gi|83305118|sp|P19234|NDUV2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|34849740|gb|AAH58495.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Rattus norvegicus]
 gi|149037363|gb|EDL91794.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_a
           [Rattus norvegicus]
          Length = 248

 Score =  318 bits (817), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  D YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G   +  
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247


>gi|110625954|ref|NP_082664.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Mus musculus]
 gi|146345463|sp|Q9D6J6|NDUV2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; AltName: Full=NADH-ubiquinone
           oxidoreductase 24 kDa subunit; Flags: Precursor
 gi|21410924|gb|AAH30946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Mus musculus]
 gi|26347169|dbj|BAC37233.1| unnamed protein product [Mus musculus]
 gi|74139570|dbj|BAE40922.1| unnamed protein product [Mus musculus]
 gi|74150918|dbj|BAE27595.1| unnamed protein product [Mus musculus]
 gi|74151454|dbj|BAE38841.1| unnamed protein product [Mus musculus]
 gi|74197104|dbj|BAE35102.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  318 bits (816), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G   +  
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247


>gi|126321913|ref|XP_001370300.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV2
           [Monodelphis domestica]
          Length = 239

 Score =  318 bits (815), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 28  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKSYPEGHKAAAVLPVLDLAQRQNGWLPISA 87

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 88  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILEAIQKKL 146

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SD   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G  +  
Sbjct: 147 GIKVGETTSDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAG--NVP 204

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 205 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQSG 238


>gi|297493970|gb|ADI40707.1| NADH dehydrogenase flavoprotein 2, 24kDa [Miniopterus schreibersii]
          Length = 213

 Score =  317 bits (814), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
           +PGP+  R S  PAGGLTSL +  
Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213


>gi|170068588|ref|XP_001868925.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864588|gb|EDS27971.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 241

 Score =  317 bits (814), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   V+ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  H+QVC TTPC LRG ++++ VC+ K+
Sbjct: 90  MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P     DG  +  EVEC GACVNAPMV +  D YEDLT +  EEI+D    G+    
Sbjct: 149 GISPGETTKDGKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDTEEILDDLKQGK--VP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           RPGP+  R +S PAGGLTSL ++   
Sbjct: 207 RPGPRNGRFASEPAGGLTSLTEDPKG 232


>gi|12850902|dbj|BAB28888.1| unnamed protein product [Mus musculus]
          Length = 248

 Score =  317 bits (814), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 37  LFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 97  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 155

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 213

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G   +  
Sbjct: 214 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 247


>gi|3123721|dbj|BAA25988.1| 24-kDa subunit of complex I [Homo sapiens]
          Length = 231

 Score =  317 bits (814), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 20  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 79

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG    +QVC TTPCMLR  + ++E  + K+
Sbjct: 80  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYY-IQVCTTTPCMLRNSDSILEAIQKKL 138

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 139 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 196

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 197 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 230


>gi|48145973|emb|CAG33209.1| NDUFV2 [Homo sapiens]
          Length = 249

 Score =  317 bits (813), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGESTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|205628|gb|AAA41669.1| 24-kDa mitochondrial NADH dehydrogenase precursor (EC 1.6.99.3)
           [Rattus norvegicus]
          Length = 241

 Score =  317 bits (813), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 120/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 90  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  D YEDLTP+ +EEIID    G+    
Sbjct: 149 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G      
Sbjct: 207 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVPAG 240


>gi|297493968|gb|ADI40706.1| NADH dehydrogenase flavoprotein 2, 24kDa [Scotophilus kuhlii]
          Length = 213

 Score =  317 bits (813), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQICTTTPCMLRNSDSILEAIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--MP 189

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
           +PGP+  R S  PAGGLTSL +  
Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213


>gi|297493972|gb|ADI40708.1| NADH dehydrogenase flavoprotein 2, 24kDa [Cynopterus sphinx]
          Length = 213

 Score =  317 bits (812), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 13  LFVHRDTPDNNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 72

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 73  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEXIQKKL 131

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 132 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 189

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
           +PGP+  R S  PAGGLTSL +  
Sbjct: 190 KPGPRSGRFSCEPAGGLTSLTEPP 213


>gi|281338965|gb|EFB14549.1| hypothetical protein PANDA_005960 [Ailuropoda melanoleuca]
          Length = 209

 Score =  316 bits (811), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A+  
Sbjct: 1   HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 60

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+  K
Sbjct: 61  VAEVLKVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKLGIK 119

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    +PG
Sbjct: 120 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IPKPG 177

Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           P+  R S  PAGGLTSL +   K  G   +  
Sbjct: 178 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 208


>gi|149641744|ref|XP_001507932.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Ornithorhynchus anatinus]
          Length = 266

 Score =  315 bits (809), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A+  
Sbjct: 58  HRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNK 117

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA +L +  +RV E+ATFYT +   PVG + HVQVC TTPCMLR  + ++E  + K+  K
Sbjct: 118 VAEVLGVPPMRVYEVATFYTMYNRKPVG-KYHVQVCTTTPCMLRDSDSILEAIQKKLGIK 176

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    +PG
Sbjct: 177 VGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPKPG 234

Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           P+  R S  PAGGLTSL +   K  G   +  
Sbjct: 235 PRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 265


>gi|47223039|emb|CAG07126.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 244

 Score =  315 bits (808), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/215 (42%), Positives = 124/215 (57%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+EE+   +  +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTAENNPETPFEFTEENKKRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPLSA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L++  +RV E+ATFYT F   PVG +  +Q+C TTPCML   + ++E  +NK+
Sbjct: 93  MNKVAEVLEIPPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEALQNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 152 GIKVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGR--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +   K  G   + D
Sbjct: 210 PPGPRGGRFSCEPAGGLTSLTE-PPKGPGFGVRSD 243


>gi|227297|prf||1701345A NADH dehydrogenase FeS protein
          Length = 249

 Score =  314 bits (805), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 86/215 (40%), Positives = 120/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QV  TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVGTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGGLTSL +   K  G   +  
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTE-PPKGPGFGVQAG 248


>gi|148235351|ref|NP_001090944.1| NADH dehydrogenase ubiquinone flavoprotein 2 precursor [Sus scrofa]
 gi|117660947|gb|ABK55646.1| NDUFV2 [Sus scrofa]
          Length = 249

 Score =  314 bits (805), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F  E+   +      YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFPPENYKRIEANCKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 98  MNKVAEILQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 156

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--IP 214

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           +PGP+  R S  PAGGLTSL +    
Sbjct: 215 KPGPRSGRFSCEPAGGLTSLTEPPKG 240


>gi|327281982|ref|XP_003225724.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Anolis carolinensis]
          Length = 289

 Score =  313 bits (804), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 123/215 (57%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  +++ YP     +AVIP+L  AQ Q GW+  +A
Sbjct: 78  LFVHRDTSENNPSTPFDFTPENYKRIEAIVNNYPEGHKSAAVIPVLDLAQRQHGWLPISA 137

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL M  +RV E+ATFYT +   PVG + H+Q+C TTPCMLR  + ++E  + K+
Sbjct: 138 MNKVAEILKMPPMRVYEVATFYTMYNRKPVG-KHHIQICTTTPCMLRDSDSILEAIQQKL 196

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SD   +  EVEC GACVNAPMV I  + YEDLT + +E+I+D    G+    
Sbjct: 197 GIKVGETTSDQLFTLTEVECLGACVNAPMVQINDNYYEDLTTKDIEDILDELKAGK--VP 254

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  P GGLTSL +   K  G   + D
Sbjct: 255 KPGPRNGRFSCEPVGGLTSLTE-PPKPPGFGVRSD 288


>gi|225707972|gb|ACO09832.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Osmerus
           mordax]
          Length = 244

 Score =  313 bits (804), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F++E+   +  +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTPDNNPDTPFEFTDENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L++  +RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 93  MNKVAEVLEVPPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCNSDSILEAIKNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   S  EVEC GACVNAPMV I  + YEDL+P+ +EEIID    G     
Sbjct: 152 GIKVGETTPDKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIEEIIDELKAG--TIP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLT L +      G   + D
Sbjct: 210 APGPRNGRFSCEPAGGLTCLTE-PPPGPGFGVRAD 243


>gi|308321298|gb|ADO27801.1| mitochondrial NADH dehydrogenase flavoprotein 2 [Ictalurus
           furcatus]
          Length = 244

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 3/213 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
            V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+
Sbjct: 34  FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA IL+++ +RV E+ATFYT F   PVG + H+Q+C TTPCML   + +++  +NK+ 
Sbjct: 94  NKVAEILEVSPMRVYEVATFYTMFNRQPVG-KYHIQICTTTPCMLCDSDSILQAIQNKLG 152

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +     +DG  +  EVEC GACVNAPMV I  + YEDL P  +E IID    G+     
Sbjct: 153 IEVGETTADGLFTLIEVECLGACVNAPMVQINDNYYEDLKPSDIEHIIDELKAGR--VPP 210

Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
           PGP+  R S  PAGGLTSL           + D
Sbjct: 211 PGPRNGRFSCEPAGGLTSLTGPPPGPGLGVRPD 243


>gi|41152189|ref|NP_957041.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           precursor [Danio rerio]
 gi|37747980|gb|AAH59546.1| Zgc:73198 [Danio rerio]
          Length = 244

 Score =  312 bits (800), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   V  +I+ YP     +A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTPENNPDTPFEFTPENMKRVEAIINNYPEGHKAAATIPVLDLAQRQNGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +A +RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 93  MNKVAEVLGIAPMRVYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     +D   +  EVEC GACVNAPMV I  + YEDL P  +E+IID    G+    
Sbjct: 152 GIKVGETTADKLFTLTEVECLGACVNAPMVQINDNYYEDLKPSDMEQIIDELKAGR--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 210 PPGPRSGRFSCEPAGGLTSLTE-PPPGPGVGVRAD 243


>gi|209732318|gb|ACI67028.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Salmo
           salar]
          Length = 244

 Score =  310 bits (795), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ ++   ++ +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 93  MNKVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEAIQNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++I+D    G+    
Sbjct: 152 GIKAGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQILDELKAGK--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 210 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 243


>gi|225705108|gb|ACO08400.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 265

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ ++   ++ +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 54  IFVHRDTPDNNPDTPFEFTVDNLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 113

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 114 MNKVAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKL 172

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++IID    GQ    
Sbjct: 173 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VP 230

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 231 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 264


>gi|157110246|ref|XP_001651019.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|94468524|gb|ABF18111.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Aedes
           aegypti]
 gi|108878788|gb|EAT43013.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
          Length = 240

 Score =  310 bits (794), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   VN +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 29  LFVHRDTAEDNPSIPFEFTEENKKRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  HVQVC TTPC LRG ++++  C+ K+
Sbjct: 89  MHRVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ +  D YEDLT +   EI+     G+    
Sbjct: 148 GIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VP 205

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           RPGP+  R +S P GGLTSL +    
Sbjct: 206 RPGPRNGRFASEPTGGLTSLTEEPKG 231


>gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42]
 gi|86281344|gb|ABC90407.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
          Length = 385

 Score =  309 bits (793), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/218 (71%), Positives = 182/218 (83%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HSHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           +PG QIDRI SAP GG TSL     K R + KK D  S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218


>gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512]
          Length = 385

 Score =  309 bits (792), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 156/218 (71%), Positives = 182/218 (83%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           +PG QIDRI SAP GG TSL     K R + KK D  S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218


>gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534623|gb|ACI54558.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 388

 Score =  308 bits (790), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 155/218 (71%), Positives = 181/218 (83%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           +PG QIDRI SAP GG TSL     K R + KK D  S
Sbjct: 181 KPGTQIDRIFSAPEGGPTSLTTEEPKARTRAKKADAES 218


>gi|119592529|gb|EAW72123.1| hCG2008184 [Homo sapiens]
          Length = 220

 Score =  308 bits (790), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 9   LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 68

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  IRV E+ATFYT +   PVG + H+Q C TTPCML   + ++E  + K+
Sbjct: 69  MNKVAEVLQVPPIRVYEVATFYTMYNRKPVG-KYHIQACTTTPCMLPNSDSILEAIQKKL 127

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID    G+    
Sbjct: 128 GIKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGK--IP 185

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R S  PAGG T L +   K  G   +  
Sbjct: 186 KPGPRSGRFSCEPAGGPTPLTE-PPKGPGFGIQAG 219


>gi|297493974|gb|ADI40709.1| NADH dehydrogenase flavoprotein 2, 24kDa [Rousettus leschenaultii]
          Length = 201

 Score =  308 bits (789), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 3/197 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ E+   +  +++ YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 8   LFVHRDTPDNNPDTPFDFTPENYKRIEAIVNNYPEGHKAAAVLPVLDLAQRQNGWLPISA 67

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 68  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRNSDSILEAIQKKL 126

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I    YEDLTP+ +EEIID    G+    
Sbjct: 127 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDSYYEDLTPKDIEEIIDELKAGK--IP 184

Query: 181 RPGPQIDRISSAPAGGL 197
           +PGP+  R S  PAGGL
Sbjct: 185 KPGPRSGRFSCEPAGGL 201


>gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256118|emb|CAK07199.1| putative NADH-quinone oxidoreductase subunit E [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 388

 Score =  307 bits (788), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/215 (71%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+++A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDDNAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDVFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDR+ SAP GG TSL     K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGPTSLTTEEPKVRARAKKAD 215


>gi|229366530|gb|ACQ58245.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
 gi|229366846|gb|ACQ58403.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Anoplopoma fimbria]
          Length = 244

 Score =  307 bits (788), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+EE+ + +  +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTPDNNADTPFDFTEENKMRIEAIISMYPVGHKQAATIPVLDVAQRQHGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L++A +RV E+ATFYT F   PVG +  +Q+C TTPCML   + ++E  +NK+
Sbjct: 93  MNKVAEVLEVAPMRVYEVATFYTMFLRQPVG-KYFIQICTTTPCMLCNSDSILEAIQNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDL+P+ +E+IID    G+    
Sbjct: 152 GIKVGETTPDKMFTLIEVECLGACVNAPMVQINDNYYEDLSPKDIEDIIDELKAGR--VP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL++   K  G   + D
Sbjct: 210 LPGPRNGRFSCEPAGGLTSLIE-PPKGPGFGVRPD 243


>gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857981|gb|ACS55648.1| NADH-quinone oxidoreductase, E subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 388

 Score =  307 bits (787), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 154/215 (71%), Positives = 181/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDVFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDR+ SAP GGLTSL     K R + KK D
Sbjct: 181 KPGTQIDRVFSAPEGGLTSLTTEEPKARTRAKKAD 215


>gi|241830528|ref|XP_002414815.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215509027|gb|EEC18480.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 244

 Score =  307 bits (787), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 123/215 (57%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  ++      F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 33  LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L M  +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E +  V   K+
Sbjct: 93  MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   + DG  +   VEC GACVNAPMV +  D YEDL  + +EEI+D+   G+    
Sbjct: 152 GIGPGETSKDGLFTLSVVECLGACVNAPMVQVNDDYYEDLEAKDVEEILDSLKQGK--RP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R+S  P GGLTSL  +  K  G K + D
Sbjct: 210 KPGPRNGRLSCEPKGGLTSLT-SPPKGPGFKLRPD 243


>gi|225715916|gb|ACO13804.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Esox
           lucius]
          Length = 244

 Score =  307 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ +    ++ +IS YP    Q+A IP+L  AQ Q GW+  +A
Sbjct: 33  IFVHRDTPENNPDTPFEFTADDLKRIDAIISMYPEGHKQAATIPVLDLAQRQHGWLPISA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
              VA +L++  +RV E+ATFYT     PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 93  TNKVAEVLEVPPMRVYEVATFYTMLLRQPVG-KYHIQICTTTPCMLCNSDSILEAIQNKL 151

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     +D   S  EVEC GACVNAPMV I  + YEDLTP+ +++IID    G+    
Sbjct: 152 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLTPKDMDKIIDELKAGK--IP 209

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 210 PPGPRNGRFSCEPAGGLTSLTE-PPPGPGFGVRAD 243


>gi|17987437|ref|NP_540071.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. 16M]
 gi|23501693|ref|NP_697820.1| NADH dehydrogenase subunit E [Brucella suis 1330]
 gi|82699683|ref|YP_414257.1| NADH dehydrogenase subunit E [Brucella melitensis biovar Abortus
           2308]
 gi|148560694|ref|YP_001258784.1| NADH dehydrogenase subunit E [Brucella ovis ATCC 25840]
 gi|161618770|ref|YP_001592657.1| NADH dehydrogenase subunit E [Brucella canis ATCC 23365]
 gi|163843079|ref|YP_001627483.1| NADH dehydrogenase subunit E [Brucella suis ATCC 23445]
 gi|189024000|ref|YP_001934768.1| NADH dehydrogenase subunit E [Brucella abortus S19]
 gi|225627303|ref|ZP_03785340.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237815242|ref|ZP_04594240.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|254689062|ref|ZP_05152316.1| NADH dehydrogenase subunit E [Brucella abortus bv. 6 str. 870]
 gi|254693544|ref|ZP_05155372.1| NADH dehydrogenase subunit E [Brucella abortus bv. 3 str. Tulya]
 gi|254697196|ref|ZP_05159024.1| NADH dehydrogenase subunit E [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701574|ref|ZP_05163402.1| NADH dehydrogenase subunit E [Brucella suis bv. 5 str. 513]
 gi|254704121|ref|ZP_05165949.1| NADH dehydrogenase subunit E [Brucella suis bv. 3 str. 686]
 gi|254706979|ref|ZP_05168807.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M163/99/10]
 gi|254709914|ref|ZP_05171725.1| NADH dehydrogenase subunit E [Brucella pinnipedialis B2/94]
 gi|254713915|ref|ZP_05175726.1| NADH dehydrogenase subunit E [Brucella ceti M644/93/1]
 gi|254717027|ref|ZP_05178838.1| NADH dehydrogenase subunit E [Brucella ceti M13/05/1]
 gi|254718915|ref|ZP_05180726.1| NADH dehydrogenase subunit E [Brucella sp. 83/13]
 gi|254730092|ref|ZP_05188670.1| NADH dehydrogenase subunit E [Brucella abortus bv. 4 str. 292]
 gi|256031407|ref|ZP_05445021.1| NADH dehydrogenase subunit E [Brucella pinnipedialis M292/94/1]
 gi|256044485|ref|ZP_05447389.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060918|ref|ZP_05451076.1| NADH dehydrogenase subunit E [Brucella neotomae 5K33]
 gi|256159528|ref|ZP_05457296.1| NADH dehydrogenase subunit E [Brucella ceti M490/95/1]
 gi|256254815|ref|ZP_05460351.1| NADH dehydrogenase subunit E [Brucella ceti B1/94]
 gi|256257311|ref|ZP_05462847.1| NADH dehydrogenase subunit E [Brucella abortus bv. 9 str. C68]
 gi|256369238|ref|YP_003106746.1| ATP synthase subunit E [Brucella microti CCM 4915]
 gi|260168541|ref|ZP_05755352.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|260545495|ref|ZP_05821236.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260563839|ref|ZP_05834325.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260566630|ref|ZP_05837100.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260754560|ref|ZP_05866908.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757781|ref|ZP_05870129.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761606|ref|ZP_05873949.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883587|ref|ZP_05895201.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|261213809|ref|ZP_05928090.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|261218834|ref|ZP_05933115.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261221996|ref|ZP_05936277.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|261314442|ref|ZP_05953639.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261317460|ref|ZP_05956657.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261321667|ref|ZP_05960864.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261324918|ref|ZP_05964115.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261752127|ref|ZP_05995836.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261754787|ref|ZP_05998496.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|261758014|ref|ZP_06001723.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|265983902|ref|ZP_06096637.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|265988496|ref|ZP_06101053.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|265990909|ref|ZP_06103466.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997960|ref|ZP_06110517.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|294852163|ref|ZP_06792836.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297248160|ref|ZP_06931878.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306838237|ref|ZP_07471089.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
 gi|306841956|ref|ZP_07474633.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306843743|ref|ZP_07476342.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
 gi|17983130|gb|AAL52335.1| NADH-quinone oxidoreductase chain e [Brucella melitensis bv. 1 str.
           16M]
 gi|23347615|gb|AAN29735.1| NADH dehydrogenase I, E subunit [Brucella suis 1330]
 gi|82615784|emb|CAJ10782.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148371951|gb|ABQ61930.1| NADH dehydrogenase I, E subunit [Brucella ovis ATCC 25840]
 gi|161335581|gb|ABX61886.1| NADH-quinone oxidoreductase, E subunit [Brucella canis ATCC 23365]
 gi|163673802|gb|ABY37913.1| NADH-quinone oxidoreductase, E subunit [Brucella suis ATCC 23445]
 gi|189019572|gb|ACD72294.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Brucella abortus
           S19]
 gi|225617308|gb|EEH14353.1| NADH-quinone oxidoreductase, E subunit [Brucella ceti str. Cudo]
 gi|237790079|gb|EEP64289.1| NADH-quinone oxidoreductase, E subunit [Brucella abortus str. 2308
           A]
 gi|255999398|gb|ACU47797.1| ATP synthase subunit E [Brucella microti CCM 4915]
 gi|260096902|gb|EEW80777.1| NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260153855|gb|EEW88947.1| NADH dehydrogenase [Brucella melitensis bv. 1 str. 16M]
 gi|260156148|gb|EEW91228.1| NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|260668099|gb|EEX55039.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672038|gb|EEX58859.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674668|gb|EEX61489.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873115|gb|EEX80184.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|260915416|gb|EEX82277.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|260920580|gb|EEX87233.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|260923923|gb|EEX90491.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261294357|gb|EEX97853.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261296683|gb|EEY00180.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261300898|gb|EEY04395.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261303468|gb|EEY06965.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261737998|gb|EEY25994.1| NADH dehydrogenase subunit E [Brucella sp. F5/99]
 gi|261741880|gb|EEY29806.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|261744540|gb|EEY32466.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|262552428|gb|EEZ08418.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|263001693|gb|EEZ14268.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264660693|gb|EEZ30954.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|264662494|gb|EEZ32755.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|294820752|gb|EFG37751.1| NADH dehydrogenase I subunit E [Brucella sp. NVSL 07-0026]
 gi|297175329|gb|EFH34676.1| NADH dehydrogenase I subunit E [Brucella abortus bv. 5 str. B3196]
 gi|306275934|gb|EFM57647.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO1]
 gi|306287947|gb|EFM59358.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. BO2]
 gi|306406681|gb|EFM62908.1| NADH-quinone oxidoreductase, E subunit [Brucella sp. NF 2653]
          Length = 237

 Score =  307 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 141/208 (67%), Positives = 172/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|72007636|ref|XP_783224.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
 gi|115950058|ref|XP_001178801.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
          Length = 242

 Score =  306 bits (785), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R ++     + F F+EE+   VN++I+ YP     +A +P+L  AQ Q GW   +A
Sbjct: 31  LFVHRDSDANNPNTPFEFTEENMKRVNDIIANYPEGHQAAACLPILDLAQRQHGWTPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL M  +RV E+ATFYT F  +PVG + H+Q+C TTPCMLR  + ++EV   K+
Sbjct: 91  MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDL  + +EEIID    G+  T 
Sbjct: 150 GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R +S P GGLTSL+D      G   +DD
Sbjct: 208 KPGPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 241


>gi|62289755|ref|YP_221548.1| NADH dehydrogenase subunit E [Brucella abortus bv. 1 str. 9-941]
 gi|62195887|gb|AAX74187.1| NuoE, NADH dehydrogenase I, E subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 237

 Score =  306 bits (785), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 141/208 (67%), Positives = 172/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHNPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|289739805|gb|ADD18650.1| mitochondrial NADH-ubiquinone oxidoreductase 24 kDa subunit
           precursor [Glossina morsitans morsitans]
          Length = 242

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V+ ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPDVPFEFTAENQKRVDAILSIYPEGHKRGALIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++  C+  +
Sbjct: 91  MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILATCKKTL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPM+ I  D YEDLT + +EEI+      +    
Sbjct: 150 GIGVGETTKDMKFTISEVECLGACVNAPMIAINDDYYEDLTSKDMEEILADCKAER--VP 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           R GP+  R +S P G  TSL +    
Sbjct: 208 RAGPRNGRFASEPKGNPTSLTEEPKG 233


>gi|256083931|ref|XP_002578188.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238663550|emb|CAZ34426.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Schistosoma
           mansoni]
          Length = 248

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 123/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F FS E+   ++ +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETRENNSNTPFEFSAENKKRLDVIISNYPPAHKAAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML   G E ++   + 
Sbjct: 92  MNKVAEILNVPQMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEVILNALKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    I++    G+  
Sbjct: 151 NLGIEPGQTTPDKMFTLTEVECLGACVNAPMMQINDDYYEDLTAEDTIRILEEIKAGK-- 208

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTSL +   K  G K + D
Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKSPGFKVRSD 247


>gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894]
          Length = 322

 Score =  305 bits (782), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 155/215 (72%), Positives = 182/215 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H     RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTPERLEEIID F+ G G +I
Sbjct: 121 HAHAFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPERLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PG QIDRI SAP GGLTSL     K + + KK D
Sbjct: 181 KPGTQIDRIFSAPEGGLTSLTTEEPKAKTRAKKTD 215


>gi|225852322|ref|YP_002732555.1| NADH dehydrogenase subunit E [Brucella melitensis ATCC 23457]
 gi|256264179|ref|ZP_05466711.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640687|gb|ACO00601.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis ATCC
           23457]
 gi|263094397|gb|EEZ18242.1| NADH dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408829|gb|ADZ65894.1| NADH dehydrogenase subunit E [Brucella melitensis M28]
 gi|326538545|gb|ADZ86760.1| NADH-quinone oxidoreductase, E subunit [Brucella melitensis M5-90]
          Length = 237

 Score =  305 bits (782), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 141/208 (67%), Positives = 171/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S PA GLT+L  +   K+
Sbjct: 181 KPGPQDGRVTSEPASGLTALTKDLDYKK 208


>gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496124|gb|ADR52723.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 203

 Score =  305 bits (781), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 175/203 (86%), Positives = 188/203 (92%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA
Sbjct: 1   MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI
Sbjct: 61  IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I
Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
           RPGPQIDRISSAPAGGLTSL++ 
Sbjct: 181 RPGPQIDRISSAPAGGLTSLVEE 203


>gi|193669336|ref|XP_001946901.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 240

 Score =  305 bits (781), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M   R  +E+     F FS+E+   ++ +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 29  MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA++LD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG + +I   + K+
Sbjct: 89  MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + DG  +  EVEC GACVNAPM+ +  D +EDLT + +E IID    G+  T 
Sbjct: 148 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 205

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R +S P  GLTSL +      G K + D
Sbjct: 206 TPGPRSSRYASEPMDGLTSLKEE-PYGPGFKVRPD 239


>gi|226466931|emb|CAX75946.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  305 bits (781), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML   G E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTSL +   K  G K + D
Sbjct: 209 KPKPGPQNGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247


>gi|226466927|emb|CAX75944.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  304 bits (780), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML   G E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTSL +   K  G K + D
Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247


>gi|226466923|emb|CAX75942.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466925|emb|CAX75943.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466929|emb|CAX75945.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
 gi|226466933|emb|CAX75947.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 248

 Score =  304 bits (780), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F FS E+   +N +IS YPP+   +A+IP L  AQ Q GW+  +A
Sbjct: 32  LFVHRETPDNNSNTPFEFSAENKKRLNVIISNYPPAHKSAAIIPALDLAQRQHGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML   G E ++   + 
Sbjct: 92  MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 150

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 151 TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 208

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTSL +   K  G K + D
Sbjct: 209 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 247


>gi|239789116|dbj|BAH71204.1| ACYPI002841 [Acyrthosiphon pisum]
          Length = 212

 Score =  304 bits (779), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M   R  +E+     F FS+E+   ++ +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 1   MFNHRDTKEDNLDIKFEFSDENKKRIDAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA++LD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG + +I   + K+
Sbjct: 61  MHKVADVLDLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSDDVISCLKKKL 119

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + DG  +  EVEC GACVNAPM+ +  D +EDLT + +E IID    G+  T 
Sbjct: 120 DIGVGETSKDGQWTLSEVECLGACVNAPMMQVNDDYFEDLTTKDVESIIDDLKNGK--TP 177

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R +S P  GLTSL +      G K + D
Sbjct: 178 TPGPRSSRYASEPMDGLTSLKEE-PYGPGFKVRPD 211


>gi|195131273|ref|XP_002010075.1| GI14890 [Drosophila mojavensis]
 gi|193908525|gb|EDW07392.1| GI14890 [Drosophila mojavensis]
          Length = 242

 Score =  303 bits (778), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFSAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++     +    
Sbjct: 150 GIGVGETTKDKKFTISEVECLGACVNAPMVSINDDYYEDLTGKDMQEILNDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL+++   
Sbjct: 208 PPGPRNGRFASEPKGEPTSLIEDPKG 233


>gi|153009747|ref|YP_001370962.1| NADH dehydrogenase subunit E [Ochrobactrum anthropi ATCC 49188]
 gi|151561635|gb|ABS15133.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 385

 Score =  303 bits (778), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 138/208 (66%), Positives = 171/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I+++P  R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWAHKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEHVAGMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQ  R++S P  GLT+L ++   K+
Sbjct: 181 KPGPQDGRVTSEPINGLTALTEDLDYKK 208


>gi|256113341|ref|ZP_05454199.1| NADH dehydrogenase subunit E [Brucella melitensis bv. 3 str. Ether]
 gi|265994747|ref|ZP_06107304.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|262765860|gb|EEZ11649.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
          Length = 237

 Score =  303 bits (777), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 140/208 (67%), Positives = 171/208 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W ++ I++YP  R QSAVIPLLMRAQEQEGWV++A+
Sbjct: 1   MSVRRLADDAVQPATFAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEGWVTKAS 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVG+RAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEYVAAMLNMPLIRVLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDTI
Sbjct: 121 HHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           + GPQ  R++S PA GLT+L ++   K+
Sbjct: 181 KSGPQDGRVTSEPASGLTALTEDLDYKK 208


>gi|260797853|ref|XP_002593915.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
 gi|229279147|gb|EEN49926.1| hypothetical protein BRAFLDRAFT_115771 [Branchiostoma floridae]
          Length = 246

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + E    + F F++E+   V  +I+ YP     +AVIP+L  AQ Q GW+  +A
Sbjct: 33  LFVHRDSPENNPDTPFEFTQENLNRVKLIINNYPVGHEAAAVIPVLDLAQRQHGWLPLSA 92

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA IL M  +RV E+ATFYT F   PVG + HVQ+C TTPC L   G + ++E  + 
Sbjct: 93  MNKVAEILKMPRMRVYEVATFYTMFNRKPVG-KYHVQICTTTPCNLGGVGSDVILEAIKK 151

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K+         D   +  EVEC GACVNAPMV I  + YEDLT   +EEI+D    G+  
Sbjct: 152 KLGINVGETTKDNMFTLIEVECLGACVNAPMVQINDNYYEDLTAADMEEILDDLMAGK-- 209

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           T + GP+  R +S P  GLTSL        G   +DD
Sbjct: 210 TPKAGPRNGRFASEPLSGLTSLT-TPPTGPGFGVRDD 245


>gi|326431971|gb|EGD77541.1| NADH dehydrogenase flavoprotein 2 [Salpingoeca sp. ATCC 50818]
          Length = 251

 Score =  302 bits (773), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 4/218 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R +EE    + F F++ +   V  +I ++PP+   +A IP+L  AQ Q  GW+   
Sbjct: 37  LFVHRDSEENNDETPFKFTDSNMKRVEAIIGQFPPNHRSAACIPVLDLAQRQNNGWLPLN 96

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA IL M  +RV E+ATFYT F   PVG + H+QVC TTPCM+RG  K+ +  + K
Sbjct: 97  AMNEVAKILRMPKMRVYEVATFYTMFNREPVG-KYHIQVCTTTPCMVRGAYKVFDHLKAK 155

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +    + D   +  EVEC GAC NAPM+ I  + YEDLT E ++ I+D    G+  T
Sbjct: 156 LGLENGETSDDKLFTLLEVECLGACANAPMIQINDEYYEDLTIEDVDRIVDMLKAGK--T 213

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +PGPQ  R ++ P  G T+LL+         +KD ++
Sbjct: 214 PKPGPQSGRNAAEPLSGQTTLLETPPPPDHLFRKDGQL 251


>gi|239831690|ref|ZP_04680019.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823957|gb|EEQ95525.1| NADH-quinone oxidoreductase, E subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 377

 Score =  302 bits (773), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 141/208 (67%), Positives = 170/208 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP++F+F+ E+  W  + I+++P  R QSAVIPLLMRAQEQ+GWV++AA
Sbjct: 1   MSVRRLADDAVQPAAFAFNAENQAWALKTIAKFPEGRQQSAVIPLLMRAQEQDGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IEHVAAMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEALMDVCRHKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +  P   N+DGTLSWEEVECQGAC NAPMVMI KD YEDLTPERL EIIDAF  G+GDT+
Sbjct: 121 NHDPFELNADGTLSWEEVECQGACANAPMVMIFKDAYEDLTPERLAEIIDAFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           +PGPQIDR +S P  GLTSL +    K+
Sbjct: 181 KPGPQIDRETSNPLNGLTSLTEELDYKK 208


>gi|195448132|ref|XP_002071524.1| GK25091 [Drosophila willistoni]
 gi|194167609|gb|EDW82510.1| GK25091 [Drosophila willistoni]
          Length = 242

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ILD+  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILDLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV +  D YEDLT + +++I+      +    
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILSDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S PAG  TSL +    
Sbjct: 208 PPGPRNGRFASEPAGNATSLTEEPKG 233


>gi|304391404|ref|ZP_07373346.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
 gi|303295633|gb|EFL89991.1| NADH dehydrogenase subunit e [Ahrensia sp. R2A130]
          Length = 422

 Score =  301 bits (772), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 141/216 (65%), Positives = 167/216 (77%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP +F FS+ +  W  + I  YP  R  SAVIPLLMRAQEQEGWV++AA
Sbjct: 1   MSVRRLADETVQPDAFKFSKANGAWAKKKIKDYPKGRQASAVIPLLMRAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L M  IRVLE+ATFYTQFQL+PVG RAHVQVCGTTPCMLRG  ++++VC+ +I
Sbjct: 61  IEHIAEMLGMPLIRVLEVATFYTQFQLAPVGKRAHVQVCGTTPCMLRGAGEIMDVCKKRI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP   + DG LSWEEVECQGACVNAPMVM+ KD+YEDLT ER+EEIIDAF  G GD+I
Sbjct: 121 APKPFELSEDGNLSWEEVECQGACVNAPMVMVFKDSYEDLTAERMEEIIDAFDAGNGDSI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
            PGPQIDRI SAP GGLTSL ++ + K  +K    K
Sbjct: 181 PPGPQIDRIYSAPIGGLTSLTEDPTLKGARKTGKGK 216


>gi|148255910|ref|YP_001240495.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
 gi|146408083|gb|ABQ36589.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. BTAi1]
          Length = 203

 Score =  300 bits (770), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 127/204 (62%), Positives = 154/204 (75%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA ++ QP+SF+F+EE+  +    I++YP  R  SAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKDLQPASFAFTEENLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA++L M YIRVLE+ATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61  AIRVVADMLGMPYIRVLEVATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMV + KDTYEDLTPE   +++D F+TG  + 
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATG--NL 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
             PGPQ  R  SAPAGG T+L + 
Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202


>gi|198433298|ref|XP_002128498.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 24 kDa subunit) (NADH dehydrogenase
           subunit II) [Ciona intestinalis]
          Length = 242

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +       E    + F F++++   +  + + YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 31  IFNHVDTPENNANTPFDFTKKNYERIEAIKANYPEGHKVAAVMPILDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LD+  +RV E+ATFYT +  +P+G + H+Q+C TTPCML G + ++EV + K+
Sbjct: 91  MNKVAELLDVPPMRVYEVATFYTMYNRNPIG-KYHLQLCTTTPCMLCGSDGILEVIQKKL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      DG  +  E EC GACVNAPM+ I    YEDL P  +EEI+D  + G+    
Sbjct: 150 GIKVGETTKDGLFTLMEAECLGACVNAPMIQINDMYYEDLKPSDMEEILDDLTNGR--EP 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+ +R +  P GGLTSL +      G   + D
Sbjct: 208 KPGPRSERFACEPLGGLTSLTE-PPTGPGFGIRTD 241


>gi|119113027|ref|XP_308018.3| AGAP002170-PA [Anopheles gambiae str. PEST]
 gi|116132852|gb|EAA03768.3| AGAP002170-PA [Anopheles gambiae str. PEST]
          Length = 231

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ ++      +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 20  LFVHRDTPEDNASIPFEFTADNQKRAEAILNIYPEGHKRGAMIPLLDLAQRQHGWLPLSA 79

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL + ++RV E+ATFYT F   P G + H+QVC TTPC LRG +++++VC+  +
Sbjct: 80  MHKVADILGLPHMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEVLDVCKKNL 138

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ +  D YEDL+    EEI+++   GQ    
Sbjct: 139 GIGVGETTKDGKFTISEVECLGACVNAPMLAVNDDYYEDLSVADTEEILNSLKQGQ--QP 196

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
           RPGP+  R +S P G LTSL +    
Sbjct: 197 RPGPRNGRYASEPVGQLTSLTEEPKG 222


>gi|195049609|ref|XP_001992752.1| GH24933 [Drosophila grimshawi]
 gi|193893593|gb|EDV92459.1| GH24933 [Drosophila grimshawi]
          Length = 242

 Score =  300 bits (769), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS E+   V+ ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVADILGLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILEQCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I+      +    
Sbjct: 150 AIGVGETTKDNKFTISEVECLGACVNAPMVSINDDYYEDLTAKDMQDILSDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL +    
Sbjct: 208 PPGPRNGRFASEPKGNPTSLSEEPKG 233


>gi|195481106|ref|XP_002101517.1| GE17674 [Drosophila yakuba]
 gi|194189041|gb|EDX02625.1| GE17674 [Drosophila yakuba]
          Length = 242

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     +    
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL +    
Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233


>gi|194892023|ref|XP_001977580.1| GG19123 [Drosophila erecta]
 gi|190649229|gb|EDV46507.1| GG19123 [Drosophila erecta]
          Length = 242

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     +    
Sbjct: 150 GIGVGDTTKDKKFTISEVECLGACVNAPMVAINDDYYEDLTAKDMQDILNDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL +    
Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233


>gi|194766874|ref|XP_001965549.1| GF22392 [Drosophila ananassae]
 gi|190619540|gb|EDV35064.1| GF22392 [Drosophila ananassae]
          Length = 242

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTPENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV +  D YEDLT + ++ I+      +    
Sbjct: 150 SIGVGETTKDKKFTISEVECLGACVNAPMVSVNDDYYEDLTAKDMQNILADLKADKPSP- 208

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL++    
Sbjct: 209 -PGPRNGRFASEPKGEPTSLIEEPKG 233


>gi|299135028|ref|ZP_07028219.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
 gi|298590005|gb|EFI50209.1| NADH-quinone oxidoreductase, E subunit [Afipia sp. 1NLS2]
          Length = 212

 Score =  298 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 133/214 (62%), Positives = 167/214 (78%), Gaps = 5/214 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP+SF F++E+  W  + I++YP  R QSAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKELQPASFVFTDENLAWAKQQIAKYPEGRQQSAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L MA+IRV+EIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61  AIRAVADLLGMAHIRVMEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G  + 
Sbjct: 121 IHHDPFHVSADGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLD--NNSKKRGKK 211
            +PGPQIDR  +AP GG   L +  +++ K+GKK
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLQEVGDDATKKGKK 212


>gi|209885056|ref|YP_002288913.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
           carboxidovorans OM5]
 gi|209873252|gb|ACI93048.1| NADH-quinone oxidoreductase subunit e 1 [Oligotropha
           carboxidovorans OM5]
          Length = 250

 Score =  298 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/212 (61%), Positives = 160/212 (75%), Gaps = 3/212 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA +E QP SF F++E+  W  + I ++PP R QSAVIP+L R QEQ EGWVS A
Sbjct: 1   MAVRRLAPKELQPESFVFTDENLAWAKQQIEKFPPGRQQSAVIPILWRVQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L MA+IRVLEIATFYT FQLSPVG +AHVQVCGTTPCMLRG + L+EVC+++
Sbjct: 61  AIRAVADLLGMAHIRVLEIATFYTMFQLSPVGKKAHVQVCGTTPCMLRGAKDLVEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMVMI KDTYEDLTPE L +++D F++G  + 
Sbjct: 121 IHHDPGHVSEDGDFSWEEVECLGACVNAPMVMIWKDTYEDLTPETLNKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
            +PGPQIDR  +AP GG   L D  +   G+ 
Sbjct: 179 PKPGPQIDRQFAAPVGGPRVLKDITASGDGRG 210


>gi|163868369|ref|YP_001609578.1| NADH dehydrogenase subunit E [Bartonella tribocorum CIP 105476]
 gi|161018025|emb|CAK01583.1| NADH dehydrogenase I, E subunit [Bartonella tribocorum CIP 105476]
          Length = 223

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 145/204 (71%), Positives = 167/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPTEFSFTKENQIWVKSTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG ++LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSDELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HHEPFTTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFGAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ  R SS P  GLTSLL++ 
Sbjct: 181 AVGPQNSRQSSEPISGLTSLLEDE 204


>gi|332374938|gb|AEE62610.1| unknown [Dendroctonus ponderosae]
          Length = 243

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F FS ++   V  +++ YP    ++A+IPLL  AQ Q GW+  +A
Sbjct: 32  LFVHRDTPEDNPDIPFEFSADNKKRVEAILAIYPEGHKRAAMIPLLDLAQRQYGWLPISA 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG  ++++  +  +
Sbjct: 92  MHHVADILKLPKMRVYEVATFYTMFMRKPTG-KYHLQVCTTTPCWLRGSNEILDTIKKNL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +    +SD   +  EVEC GACVNAPMV I  D YEDLT +  EEI+     G+    
Sbjct: 151 GLEVGETSSDKLFTISEVECLGACVNAPMVQINDDYYEDLTVQDTEEILADLKAGR--KP 208

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R ++ P G  TSL        G   + D
Sbjct: 209 KPGPRSGRYAAEPIGEPTSLKGEPP-AAGFGVRAD 242


>gi|167535370|ref|XP_001749359.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772225|gb|EDQ85880.1| predicted protein [Monosiga brevicollis MX1]
          Length = 262

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 4/218 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R  E+     +F F+ E+   V  + +++PP    +A IP+L  AQ Q G W+  +
Sbjct: 48  LFVHRDTEKNNSSIAFEFTPENMKKVEAITAQFPPGHRAAACIPVLDLAQRQYGGWLPIS 107

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA +L M  IRV E+A+FYT F   PVG + HVQVC TTPCM+RG   + E  + K
Sbjct: 108 AMDEVARVLQMPKIRVYEVASFYTMFNRDPVG-KYHVQVCTTTPCMVRGAYNIFEHLQKK 166

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +       + DG  +  EVEC GAC NAPM+ I  + YEDL    ++ II+A    +G+T
Sbjct: 167 LGLHNGETSEDGMFTLLEVECLGACSNAPMIQINDEYYEDLELADVDRIIEALR--KGET 224

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +PGPQ  R ++ P GGLT+L         K + D K+
Sbjct: 225 PKPGPQNGRKAAEPLGGLTALTSEPVDGAHKFRTDGKL 262


>gi|27820078|gb|AAL68189.2| GH08937p [Drosophila melanogaster]
          Length = 269

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 58  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 117

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 118 MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 176

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     +    
Sbjct: 177 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADK--IS 234

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL +    
Sbjct: 235 PPGPRNGRFASEPKGEPTSLSEEPKG 260


>gi|18859877|ref|NP_573228.1| CG5703 [Drosophila melanogaster]
 gi|195351760|ref|XP_002042397.1| GM13517 [Drosophila sechellia]
 gi|195567381|ref|XP_002107239.1| GD15675 [Drosophila simulans]
 gi|7293367|gb|AAF48745.1| CG5703 [Drosophila melanogaster]
 gi|194124240|gb|EDW46283.1| GM13517 [Drosophila sechellia]
 gi|194204644|gb|EDX18220.1| GD15675 [Drosophila simulans]
 gi|220944522|gb|ACL84804.1| CG5703-PA [synthetic construct]
 gi|220954400|gb|ACL89743.1| CG5703-PA [synthetic construct]
          Length = 242

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    D   +  EVEC GACVNAPMV I  D YEDLT + +++I++     +    
Sbjct: 150 GIGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILNDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
            PGP+  R +S P G  TSL +    
Sbjct: 208 PPGPRNGRFASEPKGEPTSLSEEPKG 233


>gi|325292638|ref|YP_004278502.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
 gi|325060491|gb|ADY64182.1| NADH dehydrogenase I, E subunit [Agrobacterium sp. H13-3]
          Length = 369

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 148/213 (69%), Positives = 172/213 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP +F+F+ ++  W  + I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPEGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61  IEKIADMLDMAYIRVMEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  PLH N  GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F  G+GDT+
Sbjct: 121 HHDPLHTNESGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
           + GPQIDR  S P GGLT+L +     R    K
Sbjct: 181 KTGPQIDRHQSVPVGGLTTLTEEIKPDRSNLDK 213


>gi|240850587|ref|YP_002971987.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
 gi|240267710|gb|ACS51298.1| NADH dehydrogenase I subunit E [Bartonella grahamii as4aup]
          Length = 217

 Score =  297 bits (762), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 146/208 (70%), Positives = 169/208 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HHEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             GPQ  R SS P  GLTSL+D+  +K+
Sbjct: 181 AVGPQSSRKSSEPISGLTSLIDDEKEKK 208


>gi|90417839|ref|ZP_01225751.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337511|gb|EAS51162.1| NADH dehydrogenase I, E subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 488

 Score =  297 bits (761), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 141/214 (65%), Positives = 165/214 (77%), Gaps = 1/214 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ FQP  F+F++E+A W    I +YP  R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1   MSVRRLADDAFQPHGFAFTDENAAWAQATIRKYPSERQQSAVIPLLMRAQDQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L+M  IRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E L  VCR+KI
Sbjct: 61  IEHVADMLEMPLIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGAEDLKAVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P HRN  GTLSWEEVEC GACVNAPMVMI  D YEDLTPERLEEIID F  G+G  +
Sbjct: 121 HAEPFHRNDAGTLSWEEVECLGACVNAPMVMIFHDAYEDLTPERLEEIIDEFEAGRGGDV 180

Query: 181 RPGPQIDRISSAPAGGLTSLL-DNNSKKRGKKKK 213
           + GPQ  R  S P GGLT+L  D +     +K +
Sbjct: 181 KTGPQNGRHESVPIGGLTTLKGDYDDLVADQKSQ 214


>gi|91079340|ref|XP_969318.1| PREDICTED: similar to CG5703 CG5703-PA [Tribolium castaneum]
 gi|270004890|gb|EFA01338.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Tribolium
           castaneum]
          Length = 243

 Score =  297 bits (761), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 4/214 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
              R   E+     F F+ E+    + +++ YP    ++A+IPLL  AQ Q GW+  +A+
Sbjct: 33  FNHRDTPEDNPDIPFDFTPENKKRADAILAIYPEGHKRAAMIPLLDLAQRQHGWLPISAM 92

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG +++++  +  + 
Sbjct: 93  HKVAEILNLPRMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTIKCNLK 151

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +    +SDG  +  EVEC GACVNAPM+ +  D YEDLT +  EEI++     +    +
Sbjct: 152 LEVGETSSDGMFTLSEVECLGACVNAPMIQVNDDYYEDLTAKDTEEILNDLKNNK--KPK 209

Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PGP+  R ++ P G  T L        G   + D
Sbjct: 210 PGPRNGRFAAEPIGEPTCLAGEPPG-PGFGVRSD 242


>gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58]
 gi|15156323|gb|AAK87069.1| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
           str. C58]
          Length = 369

 Score =  297 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 150/213 (70%), Positives = 172/213 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP +F+F+ ++  W  + I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPVAFAFNADNTAWAEKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L++VCR KI
Sbjct: 61  IEKVADMLDMAYIRVLEVATFYTQFQLKPVGTRAHVQVCGTTPCMLRGSEALMDVCRKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  PLH N  GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIID F  G+GDT+
Sbjct: 121 HHDPLHTNDSGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDTFEAGKGDTV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
           + GPQIDR  S P GGLT+L +     R    K
Sbjct: 181 KTGPQIDRHESVPVGGLTTLTEEIKPDRSNLDK 213


>gi|146341110|ref|YP_001206158.1| NADH dehydrogenase subunit E [Bradyrhizobium sp. ORS278]
 gi|146193916|emb|CAL77933.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Bradyrhizobium sp. ORS278]
          Length = 203

 Score =  297 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 127/204 (62%), Positives = 154/204 (75%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA +E QP+SF+F++++  +    I++YP  R  SAVI +L RAQEQ EGWVS A
Sbjct: 1   MSVRRLAPKEVQPASFAFTDDNLAFAKAQIAKYPEGRQASAVIAILWRAQEQNEGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA++L M YIRVLEIATFYT FQL PVG +AHVQVCGTTPC LRG E+LIEVC+++
Sbjct: 61  AIRVVADMLGMPYIRVLEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEELIEVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H + DG  SWEEVEC GACVNAPMV + KDTYEDLTPE   +++D F+TG  + 
Sbjct: 121 IHHDPFHLSKDGDFSWEEVECLGACVNAPMVQVWKDTYEDLTPESFGKVLDGFATG--NL 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
             PGPQ  R  SAPAGG T+L + 
Sbjct: 179 PTPGPQNGRQFSAPAGGPTTLKEK 202


>gi|114707372|ref|ZP_01440269.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
 gi|114537253|gb|EAU40380.1| NADH dehydrogenase subunit E [Fulvimarina pelagi HTCC2506]
          Length = 500

 Score =  297 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 141/215 (65%), Positives = 164/215 (76%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP SF+F++E+A W +  + +YP  R QSAVIPLLMRAQ+QEGWV++AA
Sbjct: 1   MSVRRLADDSIQPQSFAFTDENAAWADATVRKYPEGRQQSAVIPLLMRAQDQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +E VA+ L M  IRVLE+ATFYTQF L P+GTRAHVQVCGTTPCMLRG E L  VC+ KI
Sbjct: 61  VEHVADRLKMPLIRVLEVATFYTQFMLQPIGTRAHVQVCGTTPCMLRGAEDLKAVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P HRNS GTLSWEEVECQGACVNAPMVMI KD YEDLTPERLEEIID F  G G  +
Sbjct: 121 HPVPFHRNSSGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLEEIIDEFEAGNGANV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             GPQ  R  S P GGLTSL ++      K+K++ 
Sbjct: 181 TTGPQNGRHQSVPIGGLTSLTEDYGDLIAKQKREG 215


>gi|170581126|ref|XP_001895548.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597468|gb|EDP35614.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 234

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 3/196 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M V R +E     + F F+ E+   +  +IS+YPP     A+IP+L  AQ Q GW+  +A
Sbjct: 23  MVVHRDSEINNSNTPFKFTPENMKRIEVMISKYPPEYKCGALIPMLDLAQRQHGWLPISA 82

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +A +RV E+ATFY+ F   P+G +  VQVCGTTPCMLRG E ++E    K+
Sbjct: 83  MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 141

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      DG  S  EVEC GACVNAPMV I  D YEDLTPE + +I+D F  G+    
Sbjct: 142 GIKVGETTKDGLFSLAEVECLGACVNAPMVQINDDYYEDLTPEDISDILDEFKAGK--RP 199

Query: 181 RPGPQIDRISSAPAGG 196
           +PGP+  R ++ P  G
Sbjct: 200 KPGPRSGRTAAEPING 215


>gi|221127644|ref|XP_002160547.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial [Hydra magnipapillata]
          Length = 243

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E     + F F+EE+    + +IS YP     +A IPLL   Q Q GWV  + 
Sbjct: 32  LFVHRDTEYNNANTPFEFTEENKKRASVIISNYPKGHESAATIPLLDLVQRQLGWVPLSG 91

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L M  +RV E+ATFYT F   PVG + H+Q+C TTPCML   + ++ V + K+
Sbjct: 92  MNYVAKMLQMPEMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLCNSDSIMSVIKEKL 150

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P     D   +  EVEC GACVNAPMV I  + YEDL P  + EII++ +  +G   
Sbjct: 151 QINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESLA--KGIIP 208

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R +S PAGGLTSL  +  +  G K +  
Sbjct: 209 KPGPRSGRFASEPAGGLTSLT-SPPRGPGFKLQSG 242


>gi|17561328|ref|NP_506376.1| hypothetical protein F53F4.10 [Caenorhabditis elegans]
 gi|6647669|sp|Q20719|NDUV2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial; Flags: Precursor
 gi|3877525|emb|CAB01203.1| C. elegans protein F53F4.10, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 239

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  ++  YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVAKILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP+ + EI+D    G+    
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGR--KP 203

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
             GP+  R+++ P G LTSL +    
Sbjct: 204 AAGPRSGRLAAEPFGELTSLKETPPG 229


>gi|222148278|ref|YP_002549235.1| NADH dehydrogenase subunit E [Agrobacterium vitis S4]
 gi|221735266|gb|ACM36229.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
          Length = 266

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/216 (68%), Positives = 179/216 (82%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP+SF+FSEE+A+W    I +YP  R QSAVIPLLMRAQEQ+GWV++A 
Sbjct: 1   MSVRRLAEDQFQPASFAFSEENAVWAEATIRKYPEGRQQSAVIPLLMRAQEQDGWVTKAT 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA+ LDM YIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+L+++C+ KI
Sbjct: 61  IEFVADKLDMPYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELMKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +PL RNS GTLSWEEVECQGACVNAPMV+I KD YEDLTPERLEEIIDAF  G+G  +
Sbjct: 121 HPEPLERNSTGTLSWEEVECQGACVNAPMVIIFKDAYEDLTPERLEEIIDAFEAGKGVEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
           + GPQI+R+ SAP GGLTSL +  +  R  + +  +
Sbjct: 181 KTGPQIERVFSAPEGGLTSLTEEITPVRWGEGQSGQ 216


>gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1]
 gi|110284364|gb|ABG62423.1| NADH dehydrogenase subunit E [Chelativorans sp. BNC1]
          Length = 345

 Score =  295 bits (757), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 150/204 (73%), Positives = 172/204 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+VRRLA+E  QP  F+F+ E+  W +  I +YPP R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MAVRRLADEAVQPQGFAFTRENEAWAHHTIRKYPPGRQQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +LDM  IRVLE+ATFYTQFQL+PVGTRAHVQVCGTTPCMLRG   LIEVC+++I
Sbjct: 61  IEHVAKMLDMPLIRVLEVATFYTQFQLAPVGTRAHVQVCGTTPCMLRGAGDLIEVCKSRI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P H N  GTLSWEEVECQGACVNAPM+MI KD+YEDLTPERLEEIIDAF  G+GDTI
Sbjct: 121 HPEPFHTNEGGTLSWEEVECQGACVNAPMIMISKDSYEDLTPERLEEIIDAFEAGKGDTI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
           +PG QIDR++SAPA GLTSL D +
Sbjct: 181 KPGTQIDRLTSAPASGLTSLTDES 204


>gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
           radiobacter K84]
 gi|221723028|gb|ACM26184.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium
           radiobacter K84]
          Length = 381

 Score =  295 bits (756), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 147/213 (69%), Positives = 180/213 (84%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+F++E+A+W  + I +YP  R QSA+IPL+MRAQEQEGWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFNKENAVWAEKTIKKYPEGRQQSAIIPLMMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMA+IR LE+ATFYTQFQL+PVGT+AH+QVCGTTPCMLRG E L++VC++KI
Sbjct: 61  IETIADMLDMAHIRALEVATFYTQFQLNPVGTKAHIQVCGTTPCMLRGAEGLVKVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +     RN+DGTLSWEEVECQGACVNAPMV+IGKDTYEDLTPERLEEIIDAFS G+G  +
Sbjct: 121 NGHAFERNADGTLSWEEVECQGACVNAPMVVIGKDTYEDLTPERLEEIIDAFSAGEGSKV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
             GPQIDR+ SAP GGLTSL     K +    K
Sbjct: 181 PTGPQIDRVFSAPEGGLTSLTTEAPKAKSASGK 213


>gi|27380025|ref|NP_771554.1| NADH dehydrogenase subunit E [Bradyrhizobium japonicum USDA 110]
 gi|27353179|dbj|BAC50179.1| NADH ubiquinone oxidoreductase chain E [Bradyrhizobium japonicum
           USDA 110]
          Length = 203

 Score =  295 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/203 (61%), Positives = 154/203 (75%), Gaps = 3/203 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MSVRRLA +E QP+SF+F+EE+  +  + I++YP  R  SAVI +L RAQEQ  GWVS A
Sbjct: 1   MSVRRLAPKEVQPASFAFTEENLAFAKQQIAKYPAGRQASAVIAILWRAQEQHDGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V+A++LDM YIRVLE+ATFYT FQL+PVG +AHVQVCGTTPC LRG E LI VC ++
Sbjct: 61  AIRVIADMLDMPYIRVLEVATFYTMFQLAPVGKKAHVQVCGTTPCRLRGAEDLIHVCEHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC GACVNAPMV+IGKDTYEDLT E   +++D F++G  + 
Sbjct: 121 IHHEPFHLSKDGNFSWEEVECLGACVNAPMVLIGKDTYEDLTKESFGKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PGPQ  R  SAP  G T+L +
Sbjct: 179 PKPGPQNGRQFSAPITGPTTLKE 201


>gi|319408583|emb|CBI82238.1| NADH dehydrogenase I, E subunit [Bartonella schoenbuchensis R1]
          Length = 217

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 145/206 (70%), Positives = 163/206 (79%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +W    I++YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDAHQPLEFSFTKENQVWAQNTIAKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEYVAQMLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+   I
Sbjct: 121 HSEPFITNKDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKNSDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
             GPQ  R SS P  GLTSL+D N  
Sbjct: 181 AVGPQNGRKSSEPINGLTSLIDENEG 206


>gi|268554574|ref|XP_002635274.1| Hypothetical protein CBG11518 [Caenorhabditis briggsae]
 gi|187030243|emb|CAP30450.1| hypothetical protein CBG_11518 [Caenorhabditis briggsae AF16]
          Length = 239

 Score =  295 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  + + YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTPENEDRIKAICAIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP+ + EI+D    G+    
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVHEILDDLKAGR--KP 203

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
             GP+  R+++ P G LTSL +    
Sbjct: 204 AAGPRSGRLAAEPFGELTSLKETPPG 229


>gi|71004230|ref|XP_756781.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
 gi|46095830|gb|EAK81063.1| hypothetical protein UM00634.1 [Ustilago maydis 521]
          Length = 269

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/215 (42%), Positives = 121/215 (56%), Gaps = 7/215 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R  +       F F+EE+A    E+IS YP    ++AVIPLL   Q Q  GWVS +
Sbjct: 54  LFVHRNTDYNNPDIPFEFNEENAKMAQEIISHYPEQYKKAAVIPLLDLGQRQNSGWVSIS 113

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +L+M  +RV E+ATFYT F   PVG +  +Q+C TTPCML   G  K++E   
Sbjct: 114 VMNYVAKLLEMPPMRVYEVATFYTMFNREPVG-KYFLQLCTTTPCMLGGCGSTKILEALE 172

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           +K+  K      D   +  EVEC GAC NAPM+ I  D +EDLTPE +  IID  S G+ 
Sbjct: 173 SKLGIKAGQTTKDNKFTLVEVECLGACANAPMIQINDDFFEDLTPESMNNIIDKLSNGE- 231

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
             ++PGPQ  R SS PA G T+L  +     GK  
Sbjct: 232 -KVKPGPQSGRHSSEPANGRTALT-SEPYGPGKFC 264


>gi|319405694|emb|CBI79317.1| NADH dehydrogenase I, E subunit [Bartonella sp. AR 15-3]
          Length = 225

 Score =  293 bits (752), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 147/204 (72%), Positives = 166/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPVKFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HYKPFVTNQNGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGRGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204


>gi|67539814|ref|XP_663681.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|40738862|gb|EAA58052.1| hypothetical protein AN6077.2 [Aspergillus nidulans FGSC A4]
 gi|259479738|tpe|CBF70234.1| TPA: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           [Precursor] (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 270

 Score =  293 bits (752), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 90/225 (40%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E      F FSE++   + E+I+RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LHVHRNTPENNPSIPFKFSEQNQQLIEEIIARYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++E++ A       
Sbjct: 158 HLGITPGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKELLTALKESATA 217

Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +GQ     PGP   RIS   + GLT+L +         +KD  +
Sbjct: 218 TSGQVKIPAPGPLSGRISCENSAGLTNLHNPVWDPETMMRKDGAL 262


>gi|212528898|ref|XP_002144606.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210074004|gb|EEA28091.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 260

 Score =  293 bits (752), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FS E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LFVHRNKPDNNPSIPFKFSAENEKVIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G +K+++    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINK 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE + +++ A      +
Sbjct: 158 HLGITPGHTTEDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESITQLLTALKESATN 217

Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                  PGP   R +   + GLT+L +         +KD ++
Sbjct: 218 PAVKVPAPGPLSGRDTCENSAGLTNLKEVTWNPEQMMRKDGEL 260


>gi|254568298|ref|XP_002491259.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031056|emb|CAY68979.1| Hypothetical protein PAS_chr2-1_0359 [Pichia pastoris GS115]
 gi|308152248|emb|CBI83543.1| NUHM (24 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Pichia pastoris]
 gi|328352223|emb|CCA38622.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Pichia pastoris CBS
           7435]
          Length = 241

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R   ++     F F++E+     E+I++YPP   + AV+PLL   Q Q G+ S + 
Sbjct: 30  ISVHRDTPKDNPEIPFEFTKENLERAKEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  LDM  +RV E+ATFYT +   P+G + +VQVC TTPC L G + +++     +
Sbjct: 90  MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNVQVCTTTPCQLCGSDGIMKAITEHL 148

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P     D   + +EVEC GACVNAPM+ +  D YEDLTPER  EI+  F +G  D  
Sbjct: 149 QIRPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPERTVEILKGFQSG--DIP 206

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP  DR S  P  G   L +          +DD
Sbjct: 207 KPGP-ADRHSCEPHSGPKVLTNETPYHVKDFIRDD 240


>gi|319898886|ref|YP_004158979.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
 gi|319402850|emb|CBI76401.1| NADH dehydrogenase I, E subunit [Bartonella clarridgeiae 73]
          Length = 225

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 147/204 (72%), Positives = 166/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPAEFSFTKENQVWVQNTIKKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAELLSMAYIRVLEIATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HYKPFITNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDGN 204


>gi|49474181|ref|YP_032223.1| NADH dehydrogenase subunit E [Bartonella quintana str. Toulouse]
 gi|49239685|emb|CAF26060.1| NADH dehydrogenase I, E subunit [Bartonella quintana str. Toulouse]
          Length = 216

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 144/203 (70%), Positives = 166/203 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVQNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+Q+CGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEVATFYTQFQLQPVGTKAHIQICGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N DGTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HNEPFVTNQDGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN 203
             GPQ  R SS P  GLTSL+D+
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDD 203


>gi|225681024|gb|EEH19308.1| NADH dehydrogenase flavoprotein [Paracoccidioides brasiliensis
           Pb03]
 gi|226292282|gb|EEH47702.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 259

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPNIPFKFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G  K+++   +
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +        SD   +  EVEC GACVNAPMV I  D YEDLTPE +  ++ A    + D
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217

Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           T      PGP   R S   + GLT+L  N S    + +KD ++
Sbjct: 218 TTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259


>gi|150396116|ref|YP_001326583.1| NADH dehydrogenase subunit E [Sinorhizobium medicae WSM419]
 gi|150027631|gb|ABR59748.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
           WSM419]
          Length = 273

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 150/219 (68%), Positives = 173/219 (78%), Gaps = 3/219 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPATFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61  IEKIADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 AGDPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDLFEAGKGTDV 180

Query: 181 RPGPQIDRISSAPAGGLTSLL---DNNSKKRGKKKKDDK 216
            PGPQIDRI SAP GGLT+L    +     R  K K+++
Sbjct: 181 VPGPQIDRIYSAPIGGLTTLQAPAEEKKPARASKAKEEQ 219


>gi|307942121|ref|ZP_07657472.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
 gi|307774407|gb|EFO33617.1| NADH dehydrogenase subunit e [Roseibium sp. TrichSKD4]
          Length = 468

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/211 (54%), Positives = 147/211 (69%), Gaps = 5/211 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           M+VRRLA E  QP  F F+ ++  W  ++I RYP  R  SAVIPLL RAQEQ  GWV   
Sbjct: 1   MAVRRLAAE--QPECFEFTPDNLAWAKKLIDRYPAGRQASAVIPLLWRAQEQHDGWVCEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++LD+ +IRVLE+ATFYT FQL PVG++AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIADMLDIPHIRVLEVATFYTMFQLQPVGSKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLTP+   ++ID  + G+   
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAEGK--E 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
           + PGPQ  R  S P GG TSL + N   +G+
Sbjct: 177 VMPGPQNGRRFSMPEGGQTSLTEVNDNSKGE 207


>gi|49475654|ref|YP_033695.1| NADH dehydrogenase subunit E [Bartonella henselae str. Houston-1]
 gi|49238461|emb|CAF27689.1| NADH dehydrogenase I, E subunit [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/204 (71%), Positives = 166/204 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++ +QP+ FSF++E+ IWV   I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLADDVYQPAEFSFTKENQIWVKNTIEKYPVGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLEIATFYTQFQL PVGT+AH+QVCGTTPCMLRG E+LI+VC+ KI
Sbjct: 61  IEHIAQILSMAYIRVLEIATFYTQFQLQPVGTKAHIQVCGTTPCMLRGSEELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N DG+LSWEEVEC GACVNAPMVMI KDTYEDLT +RLEEIIDAF  G+G  I
Sbjct: 121 HHKPFVTNQDGSLSWEEVECLGACVNAPMVMIFKDTYEDLTAKRLEEIIDAFEAGKGAEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ  R SS P  GLTSL+D  
Sbjct: 181 AVGPQNSRKSSEPISGLTSLIDEK 204


>gi|319407263|emb|CBI80902.1| NADH dehydrogenase I, E subunit [Bartonella sp. 1-1C]
          Length = 223

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/204 (71%), Positives = 164/204 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+   QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N  GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204


>gi|319404255|emb|CBI77848.1| NADH dehydrogenase I, E subunit [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 225

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/204 (71%), Positives = 164/204 (80%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+   QP+ FSF++E+ +WV   I +YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADAIHQPAEFSFTKENQVWVQNTIKKYPVGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A IL MAYIRVLE+ATFYTQFQL PVGT+AH+QVCGTTPCMLRG  +LI+VC+ KI
Sbjct: 61  IEHIAEILSMAYIRVLEVATFYTQFQLKPVGTKAHIQVCGTTPCMLRGSGELIKVCQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H KP   N  GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF  G+G  I
Sbjct: 121 HDKPFVTNQSGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEAGKGSNI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
             GPQ +R SS P  GLTSL+D N
Sbjct: 181 AVGPQNNRKSSEPISGLTSLVDEN 204


>gi|329850725|ref|ZP_08265570.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
 gi|328841040|gb|EGF90611.1| NADH-quinone oxidoreductase chain 2 [Asticcacaulis biprosthecum
           C19]
          Length = 218

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA    QP+SF+FS E+    N  I++YP +R QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLA--AVQPASFAFSPETMEKANWWIAKYPENRRQSAVIPILWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A +L M  IRV E+ATFYT F L PVG+ A +QVCGTTPCMLRG + L+ VC+ KI
Sbjct: 59  ISAIARLLGMPQIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSDALMAVCKAKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K    ++DG  +W+EVEC GAC NAPM  I    YEDLT E + +IID F+ G+  T 
Sbjct: 119 GPKD-KLSADGLFTWQEVECLGACCNAPMAQINDYFYEDLTAENMVQIIDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            PGP   R +S P GG T+L D+     G   K  KI
Sbjct: 176 APGPYNGRKTSEPLGGATTLSDSK-LYDGSAAKAIKI 211


>gi|225563148|gb|EEH11427.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 259

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G  K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    +  
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217

Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
              +   PGP   R S   + GLT+L  N S      + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259


>gi|15965022|ref|NP_385375.1| NADH dehydrogenase subunit E [Sinorhizobium meliloti 1021]
 gi|307301094|ref|ZP_07580863.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
 gi|8473988|sp|P56909|NUOE1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 1; AltName:
           Full=NADH dehydrogenase I subunit E 1; AltName:
           Full=NDH-1 subunit E 1
 gi|15074201|emb|CAC45848.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti 1021]
 gi|306904049|gb|EFN34635.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
          Length = 275

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 150/221 (67%), Positives = 175/221 (79%), Gaps = 5/221 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180

Query: 181 RPGPQIDRISSAPAGGLTSL-----LDNNSKKRGKKKKDDK 216
            PGPQIDR+ SAP GGLT+L     ++     R  K KD++
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKSVRASKAKDEQ 221


>gi|195165330|ref|XP_002023492.1| GL20163 [Drosophila persimilis]
 gi|194105597|gb|EDW27640.1| GL20163 [Drosophila persimilis]
          Length = 264

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + D   +  EVEC GACVNAPMV +  D YEDLT + +++I+      +    
Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
            PGP+  R +S P G  TSL +  
Sbjct: 208 PPGPRNGRFASEPKGKPTSLTEEP 231


>gi|295673278|ref|XP_002797185.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226282557|gb|EEH38123.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 259

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPNIPFQFSEQNLKLIDEILRRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G  K+++   +
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAITD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +        SD   +  EVEC GACVNAPMV I  D YEDLTPE +  ++ A    + D
Sbjct: 158 HLGVSNGQTTSDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPESVVSLLTALKQAETD 217

Query: 179 ----TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                  PGP   R S   + GLT+L  N S    + +KD ++
Sbjct: 218 VTVKVPAPGPLSGRKSCENSAGLTNLT-NPSWSPDRMRKDGEL 259


>gi|260462234|ref|ZP_05810478.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032094|gb|EEW33361.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 426

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 130/205 (63%), Positives = 159/205 (77%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP+SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPASFAFNRANAAVAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVM+ KDT+EDLTPERL EIID +  G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMVFKDTFEDLTPERLAEIIDLYDAGKGASV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205
            PGPQ  R  S PA GLT+L +  +
Sbjct: 181 APGPQNGRTGSEPATGLTTLKNEKA 205


>gi|85717025|ref|ZP_01047987.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
 gi|85696149|gb|EAQ34045.1| ATP synthase subunit E [Nitrobacter sp. Nb-311A]
          Length = 251

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 124/217 (57%), Positives = 158/217 (72%), Gaps = 3/217 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I++YP  R  SA I +L RAQEQ G W+S A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPEGRQASAAIAILWRAQEQHGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61  AIRAVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++G  + 
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKESFGKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
            +PGPQIDR  SAP GG T+L    +K  G ++   +
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGRRASAQ 215


>gi|321464432|gb|EFX75440.1| NADH:ubiquinone oxidoreductase NDUFV2/24 kDa subunit [Daphnia
           pulex]
          Length = 243

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/214 (39%), Positives = 122/214 (57%), Gaps = 5/214 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           + V R   +      F+F++E+    N +I+ YP    ++AVIPLL  AQ Q  GW+  +
Sbjct: 31  LFVHRDTPKNNPDVPFAFTKENVERANAIINIYPDGHKRAAVIPLLDLAQRQAGGWLPIS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA++L M  +RV E+ATFYT F  +P+G +  VQVC TTPC L G EK++   + K
Sbjct: 91  AMHAVADMLSMPKMRVYEVATFYTMFNRNPIG-KHFVQVCTTTPCWLNGSEKIMNCLKKK 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           ++        +G  S  EVEC GACVNAPM+ I  + +EDLT +  EEIID    G+   
Sbjct: 150 LNLNNGETTPNGEFSLLEVECLGACVNAPMMQINDNFFEDLTEKDTEEIIDDLKAGR--E 207

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
            + GP+  R ++ P  GLTSL +      G K +
Sbjct: 208 PKAGPRNGRFAAEPRDGLTSLTE-PPPGPGFKIQ 240


>gi|198468710|ref|XP_001354798.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
 gi|198146535|gb|EAL31853.2| GA19069 [Drosophila pseudoobscura pseudoobscura]
          Length = 264

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 3/204 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAIMSIYPEGHKRGAMIPLLDLAQRQYGWLPLSA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P G + H+QVC TTPC LRG ++++E C+ ++
Sbjct: 91  MHKVAEILELPNMRVYEVATFYTMFLRKPTG-KYHIQVCTTTPCWLRGSDEILETCKKQL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                  + D   +  EVEC GACVNAPMV +  D YEDLT + +++I+      +    
Sbjct: 150 GIGIGEISKDKKFTISEVECLGACVNAPMVAVNDDYYEDLTAKDMQDILRDLKADK--IS 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNN 204
            PGP+  R +S P G  TSL +  
Sbjct: 208 PPGPRNGRFASEPKGKPTSLTEEP 231


>gi|242765195|ref|XP_002340925.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724121|gb|EED23538.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 260

 Score =  291 bits (745), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LHVHRNKPDNNPSIPFKFSKENEKIIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G +K+++   N
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSDKIVQAINN 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG--- 175
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE + +++ A       
Sbjct: 158 HLGITPGHTTDDGLFTYIEVECLGACVNAPMVQINDDYYEDLTPESIVQLLTALKESATN 217

Query: 176 -QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                  PGP   R +   + GLT+L +         +KD ++
Sbjct: 218 PAAKVPAPGPLSGRETCENSAGLTNLKEVVWNPEQMMRKDGEL 260


>gi|118590034|ref|ZP_01547438.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
 gi|118437531|gb|EAV44168.1| NADH dehydrogenase subunit E [Stappia aggregata IAM 12614]
          Length = 437

 Score =  290 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 147/210 (70%), Gaps = 5/210 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           M+VRRLA E  QP SF+F+E++  W  ++I RYP  R  SAVIPLL RAQEQ EGWVS  
Sbjct: 1   MAVRRLAAE--QPESFAFTEKNLDWAKKLIDRYPAGRQASAVIPLLWRAQEQNEGWVSEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIAELLDMPKIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLTP+   ++ID  + G+   
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTPDSFNQLIDDIAAGK--E 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           + PGPQ  R  +   GG TSL + +   +G
Sbjct: 177 VTPGPQNGRRFAMAEGGQTSLTELDDDTKG 206


>gi|196003474|ref|XP_002111604.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
 gi|190585503|gb|EDV25571.1| hypothetical protein TRIADDRAFT_24589 [Trichoplax adhaerens]
          Length = 209

 Score =  290 bits (744), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 4/212 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R +++      F F+E+S     ++I+ YP     +A+IPLL  AQ Q GW+   A+  
Sbjct: 1   HRDSKDNNLDIPFEFTEKSKKRAEQIIANYPEGHKNAAIIPLLDLAQRQHGWLPLTAMNY 60

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA+ L ++ +R+ E+ATFYT F   P+G + H+Q+C TTPCMLR  + ++ V ++K+  +
Sbjct: 61  VADYLSVSRMRIYEVATFYTMFNRYPMG-KYHIQICTTTPCMLRDSDSILNVIKSKLGIE 119

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 DG  +  EVEC GACVNAPMV I  D YEDLT   +EEI+D+   G       G
Sbjct: 120 IGQTTKDGLFTLSEVECLGACVNAPMVQINDDYYEDLTTNDMEEILDSLKAG--SKPTAG 177

Query: 184 PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           P+  R  + P  GLTSL  +     G   +DD
Sbjct: 178 PRSGRKCAEPITGLTSL-SSPPTGPGFGVRDD 208


>gi|154281553|ref|XP_001541589.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150411768|gb|EDN07156.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 259

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPGIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G  K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    + D
Sbjct: 158 HLGVSNGQTTPDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKGAETD 217

Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                  PGP   R S   + GLT+L  N S      + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRSDGEL 259


>gi|261195102|ref|XP_002623955.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239587827|gb|EEQ70470.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610685|gb|EEQ87672.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327348878|gb|EGE77735.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 259

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
            +V R   E      F FSEE+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  FAVHRNTPENNPNIPFKFSEENLKLIDEILLRYPPQYKKAAVMPLLDLGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG + HV+VC TTPC L   G +K+++   +
Sbjct: 99  MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYHVKVCTTTPCQLGGCGSDKIMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +         D   +  EVEC GACVNAP+V I  D YEDLTPE +  ++DAF   + +
Sbjct: 158 HLGVSNGQTTPDKLYTVLEVECLGACVNAPVVQINDDYYEDLTPESVVSLLDAFKESETN 217

Query: 179 T----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                  PGP  +R +   + GLT+L  N S      + D ++
Sbjct: 218 KSVKIPPPGPLSERNTCENSAGLTNLT-NPSWSPELMRTDGEL 259


>gi|307317828|ref|ZP_07597266.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|5650739|emb|CAB51625.1| nuoE1 [Sinorhizobium meliloti]
 gi|306896590|gb|EFN27338.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
          Length = 276

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 150/222 (67%), Positives = 174/222 (78%), Gaps = 6/222 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE VA++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI
Sbjct: 61  IESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +P   N  GTLSWEEVECQGACVNAPMVMI KDT+EDLTPERLEEIID F  G+G  +
Sbjct: 121 ASEPFTLNEGGTLSWEEVECQGACVNAPMVMIFKDTFEDLTPERLEEIIDRFEAGKGSEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLL------DNNSKKRGKKKKDDK 216
            PGPQIDR+ SAP GGLT+L       +     R  K KD++
Sbjct: 181 VPGPQIDRVYSAPIGGLTTLQAPEPVEEKKKPVRASKAKDEQ 222


>gi|328769609|gb|EGF79652.1| hypothetical protein BATDEDRAFT_33281 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 257

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +       F F+        E+I++YP    + A +PLL  AQ Q GWVS ++
Sbjct: 46  LFVHRNTKVNNPDIPFEFTPAEMKRAQEIIAKYPAQYKKGATMPLLDLAQRQLGWVSISS 105

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A +L+M  +RV E+ATFYT +   PVG +  +QVC TTPC L G + +++     +
Sbjct: 106 MNYIAKLLEMPPMRVYEVATFYTMYNRDPVG-KYFLQVCTTTPCQLCGSDAIVKAAEETL 164

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SD   +  EVEC GACVNAP++ +  D YEDLT +  + ++++    +G   
Sbjct: 165 GIKLGETTSDNMFTLVEVECAGACVNAPVMAVNDDYYEDLTVDATKSLLESIK--KGTVP 222

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP   R++  P  GLTSL    +   G   + D
Sbjct: 223 KPGPVSGRMNCEPRAGLTSLTTKPTG-PGFGVRAD 256


>gi|260434176|ref|ZP_05788147.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418004|gb|EEX11263.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 382

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/206 (57%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPE--QPESFAFTPANLDWAKAQITKYPEGRQASAVIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E LI VCR KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG LSWEEVEC G+C NAPM  IGKD YEDLT E    IID  ++G+     P
Sbjct: 120 KPHQLSADGKLSWEEVECLGSCSNAPMAQIGKDYYEDLTAESFARIIDDLASGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P GGLTSL +    K 
Sbjct: 178 GPQNGRYAAEPKGGLTSLKEYEPGKA 203


>gi|92117739|ref|YP_577468.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
 gi|91800633|gb|ABE63008.1| NADH dehydrogenase subunit E [Nitrobacter hamburgensis X14]
          Length = 228

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 127/213 (59%), Positives = 156/213 (73%), Gaps = 3/213 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I +YP  R  SA I +L RAQEQ  GWVS A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIGQYPAGRQASAAIAILWRAQEQHDGWVSEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+N+
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGKKAHIQVCGTTPCRLRGAEDILAVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++GQ   
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +PGPQIDR  SAP GG T+L    +K  G ++
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAAKGEGGQR 211


>gi|240275732|gb|EER39245.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Ajellomyces
           capsulatus H143]
 gi|325093104|gb|EGC46414.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 259

 Score =  290 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKLIDEILLRYPPQYKKAAVMPILDLGQRQYGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQVC TTPC L   G  K+++   +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQVCTTTPCQLGGCGSAKVMKAVTD 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG- 177
            +         D   +  EVEC GACVNAPM+ I  D YEDLTPE +  ++DA    +  
Sbjct: 158 HLGVSNGQTTLDKLFTVLEVECLGACVNAPMIQINDDYYEDLTPESVVSLLDALKEAETN 217

Query: 178 ---DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
              +   PGP   R S   + GLT+L  N S      + D ++
Sbjct: 218 KSVEVPAPGPLSGRKSCENSAGLTNLT-NPSWSPELMRTDGEL 259


>gi|323508176|emb|CBQ68047.1| probable NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Sporisorium reilianum]
          Length = 268

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/218 (42%), Positives = 120/218 (55%), Gaps = 7/218 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R  +       F F+ E+A    E+IS YP    ++AVIPLL   Q Q  GWVS +
Sbjct: 53  LFVHRNTDYNNPDIPFEFNAENAKMAQEIISHYPSQYKKAAVIPLLDLGQRQNSGWVSIS 112

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +LDM  +RV E+ATFYT F   PVG    +Q+C TTPCML   G  K++E   
Sbjct: 113 VMNYVAKLLDMPPMRVYEVATFYTMFNREPVGQ-FFLQLCTTTPCMLGGCGSTKILEALE 171

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           +K+  K      D   +  EVEC GAC NAPM+ I  D YEDLTPE +  IID  ++GQ 
Sbjct: 172 DKLGIKAGQTTKDKKFTLVEVECLGACANAPMIQINDDYYEDLTPESMVNIIDKLASGQ- 230

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             ++PGPQ  R SS  A G T+L  +     GK    D
Sbjct: 231 -KVKPGPQSGRHSSEAATGRTALT-SEPYGPGKHCVPD 266


>gi|254420651|ref|ZP_05034375.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
 gi|196186828|gb|EDX81804.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Brevundimonas sp. BAL3]
          Length = 225

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/217 (51%), Positives = 142/217 (65%), Gaps = 5/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS ++       I +YP SR QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPASFAFSADTTAKAEWWIKKYPESRRQSAVIPILWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +  +L M +IRVLE+ATFYT F L PVG  A +QVCGTTPCMLRG  +L++VC+ KI
Sbjct: 59  IRAIGELLGMPFIRVLEVATFYTMFMLEPVGKTALIQVCGTTPCMLRGANELMKVCKEKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K  H ++DG  +W+EVEC GAC NAPM  I    +EDLTPE L +IID F+ G+  T 
Sbjct: 119 GPKD-HLSADGRFTWQEVECLGACSNAPMAQINDYYFEDLTPESLAQIIDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +PG    R +S PAGG  +LLD         +   K+
Sbjct: 176 KPGSYQGRATSEPAGGAKTLLDPKLYDGSAAQPIAKL 212


>gi|312077733|ref|XP_003141433.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
 gi|307763404|gb|EFO22638.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Loa loa]
          Length = 236

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/196 (43%), Positives = 119/196 (60%), Gaps = 3/196 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E     + F F+ E+   +  ++S+YPP     A+IP+L  AQ Q GW+  +A
Sbjct: 25  LVVHRDSEINNCKTPFKFTPENMKRIEVMVSKYPPEYKCGALIPMLDLAQRQHGWLPISA 84

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +A +RV E+ATFY+ F   P+G +  VQVCGTTPCMLRG E ++E    K+
Sbjct: 85  MHEVARILGIARMRVYEVATFYSMFNRKPMG-KNFVQVCGTTPCMLRGAESIMEAITKKL 143

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     SDG  +  EVEC GACVNAPMV I  D YEDLTP+ + +I+D F  G+    
Sbjct: 144 GIKVGETTSDGLFTLAEVECLGACVNAPMVQINDDYYEDLTPKDISDILDEFKAGK--RP 201

Query: 181 RPGPQIDRISSAPAGG 196
           +PGP+  R ++ P  G
Sbjct: 202 KPGPRSGRTAAEPISG 217


>gi|227821622|ref|YP_002825592.1| NADH dehydrogenase subunit E [Sinorhizobium fredii NGR234]
 gi|227340621|gb|ACP24839.1| NADH dehydrogenase I chain E [Sinorhizobium fredii NGR234]
          Length = 276

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 148/211 (70%), Positives = 171/211 (81%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE+  QP++F+FS+E+A W    I++YP  R QSA+IPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDTVQPAAFAFSKENAAWAEATINKYPKGREQSAIIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L MAYIR LE+ATFYTQFQL PVG+RAHVQVCGTTPCMLRG E LI+VC+ KI
Sbjct: 61  IESIADMLGMAYIRALEVATFYTQFQLKPVGSRAHVQVCGTTPCMLRGAEDLIKVCKKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
              P   N  GTLSWEEVECQGACVNAPMVMI KD+YEDLTPERLEEIID F  G+G  I
Sbjct: 121 AADPFTLNESGTLSWEEVECQGACVNAPMVMIFKDSYEDLTPERLEEIIDGFDAGKGAEI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
            PGPQIDRI SAPAGGLT+L    + +R K 
Sbjct: 181 EPGPQIDRIYSAPAGGLTTLQLVEAPQRTKA 211


>gi|322800071|gb|EFZ21177.1| hypothetical protein SINV_07306 [Solenopsis invicta]
          Length = 243

 Score =  288 bits (738), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E +     F F+E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEHDNPNIPFEFNEANKKRIEALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P+G + H+Q+C  TPC LR  + ++       
Sbjct: 91  MHKVAEILGVPNMRVYEVATFYTMFNRKPMG-KYHIQICTCTPCWLRDSDSIVNAVTKAT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+A    +G+  
Sbjct: 150 NCELGGTSADKMFTVSEVECLGACANAPMFQVNDDYYEDLTPETTTAIINALK--KGERP 207

Query: 181 RPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGPQ   R ++ PAGGLTSL        G   + D
Sbjct: 208 PPGPQNVSRFAADPAGGLTSLT-TPPPGPGFGVRSD 242


>gi|315499793|ref|YP_004088596.1| NADH-quinone oxidoreductase, e subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417805|gb|ADU14445.1| NADH-quinone oxidoreductase, E subunit [Asticcacaulis excentricus
           CB 48]
          Length = 221

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 117/217 (53%), Positives = 141/217 (64%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA    QP SF+F  E+    N  I++YP +R QSAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLA--AVQPDSFAFKPETLEKANWWIAKYPENRRQSAVIPILWLIQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I VVA +L MA IRV E+ATFYT F L PVG+ A +QVCGTTPC LRG E L++VC++KI
Sbjct: 59  IAVVAEMLGMARIRVYEVATFYTMFMLEPVGSAALIQVCGTTPCQLRGSEALMKVCKDKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K    ++DG   W+EVEC GAC NAPM  I    YEDLTP+ L +IID FS G+  T 
Sbjct: 119 GPKD-KLSADGKFYWQEVECLGACTNAPMAQINDYFYEDLTPDNLAQIIDDFSAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           + GP   R +S P GG T+L D  S   G   K  KI
Sbjct: 176 KTGPYNGRFTSEPLGGATTLKD-PSLYDGSAAKPLKI 211


>gi|126131460|ref|XP_001382255.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
 gi|126094080|gb|ABN64226.1| subunit NUHM of NADH:Ubiquinone Oxidoreductase [Scheffersomyces
           stipitis CBS 6054]
          Length = 239

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/215 (37%), Positives = 121/215 (56%), Gaps = 3/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R ++ + Q  +F F+ E+    +E+I++YPP   + AV+PLL   Q Q G+ S + 
Sbjct: 27  ISVHRESKLDNQNIAFEFNSENLKRADEIIAKYPPQYKKGAVMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++  ++ +
Sbjct: 87  MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDGVMKAIQDHL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ +  D YEDLTPE   +I+  F  G+    
Sbjct: 146 KVKPGQTTPDNLFTLQEVECLGACVNAPMIAVNDDFYEDLTPEATVDILKQFQAGK--EP 203

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           + GP   R S  P  G   LL        K  + D
Sbjct: 204 KIGPISGRESCEPHSGAKVLLGAEPTDLRKFTRAD 238


>gi|121698878|ref|XP_001267836.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119395978|gb|EAW06410.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 268

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R +        F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + 
Sbjct: 39  LAVHRNSPSNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G  K++E    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KYFVQLCTTTPCQLGGCGSTKILEAIEE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +     H   DG  +  EVEC GACVNAPMV I  D YEDLTPE ++ ++ A       
Sbjct: 158 HLGITSGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217

Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +G+      PGP   R +   + GLT+L D         +KD  +
Sbjct: 218 AESGKSVKVPAPGPLSGRQTCENSAGLTNLQDPVWDPETMMRKDGAL 264


>gi|218516288|ref|ZP_03513128.1| NADH dehydrogenase subunit E [Rhizobium etli 8C-3]
          Length = 195

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 146/195 (74%), Positives = 171/195 (87%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE++FQP++F+FS+E+A+W ++ I +YP  R QSAVIPLLMRAQEQ+GWV+RAA
Sbjct: 1   MSVRRLAEDQFQPAAFAFSDENAVWADKTIQKYPAGRQQSAVIPLLMRAQEQDGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KI
Sbjct: 61  IEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I
Sbjct: 121 HAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASI 180

Query: 181 RPGPQIDRISSAPAG 195
           +PG QIDRI SAP G
Sbjct: 181 KPGTQIDRIFSAPEG 195


>gi|308496289|ref|XP_003110332.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
 gi|308243673|gb|EFO87625.1| hypothetical protein CRE_05617 [Caenorhabditis remanei]
          Length = 254

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 113/221 (51%), Gaps = 18/221 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +E      F F+ E+   +  ++  YP      A+IPLL  AQ Q GW+  +A
Sbjct: 27  LMVHRDTKENNLNVKFKFTPENEDRIKAIVDIYPEGHKAGALIPLLDLAQRQHGWLPISA 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +R  E+ATFYT F   PVG +  +QVC TTPCMLRG E + E    K+
Sbjct: 87  MHEVARILEVPRMRAYEVATFYTMFNRQPVG-KYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP---------------ERL 165
                    DG  +  EVEC GACVNAPM+ I  D +EDLTP               + +
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKVFFLFELCFFISIIQDV 205

Query: 166 EEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
            EI+D    G+      GP+  R+++ P G LTSL +    
Sbjct: 206 HEILDDLKAGR--KPAAGPRSGRLAAEPFGELTSLKETPPG 244


>gi|145246598|ref|XP_001395548.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134080266|emb|CAK97169.1| unnamed protein product [Aspergillus niger]
          Length = 269

 Score =  288 bits (737), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+E++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LAVHRNKGENNPNVPFKFTEQNLKLIDEILKRYPPQYKKAAVMPVLDVGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSDKIVKAITE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A       
Sbjct: 158 HLGITPGHTTEDGLFTFVEVECLGACVNAPMVQINDDYYEDLTPESMKSLLTALKESATA 217

Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
              GQ      PGP   R +   + GLT+L++         +KD  +
Sbjct: 218 TEAGQTVKVPAPGPLSGRDTCENSAGLTNLIEPVWDPATMMRKDGAL 264


>gi|114053075|ref|NP_001040535.1| NADH-ubiquinone reductase [Bombyx mori]
 gi|95102970|gb|ABF51426.1| NADH-ubiquinone reductase [Bombyx mori]
          Length = 245

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R   E+     F FS+ +   V  +++ YP    + A+IPLL  AQ Q G W+  +
Sbjct: 31  LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA IL++  +RV E+ATFYT F   P+G + HVQVC TTPC LRG + ++   + +
Sbjct: 91  AMHKVAEILNLPKMRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSDAILNAIKQE 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            + +    +  G  S  EVEC GACVNAPM+ +  D YEDL+ E  +EII      + + 
Sbjct: 150 TNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK--KDEK 207

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            +PGP+  R +S P GGLTSL +  +   G   +D 
Sbjct: 208 PKPGPRSGRFASEPLGGLTSLTEEPTG-PGFGVQDA 242


>gi|71001132|ref|XP_755247.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66852885|gb|EAL93209.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159129331|gb|EDP54445.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 268

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R          F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + 
Sbjct: 39  LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G  K++E  + 
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +     H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A       
Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESATA 217

Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                +     PGP   R S   + GLT+L +         +KD  +
Sbjct: 218 AESGKEVKVPAPGPLSGRHSCENSAGLTNLQNPVWDPETMMRKDGAL 264


>gi|75676074|ref|YP_318495.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
 gi|74420944|gb|ABA05143.1| NADH dehydrogenase subunit E [Nitrobacter winogradskyi Nb-255]
          Length = 250

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 124/213 (58%), Positives = 155/213 (72%), Gaps = 3/213 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+FSEE+  W  + I++YP  R  SA I +L RAQEQ G W+S A
Sbjct: 1   MSVRRLAPKEQQPESFAFSEENLAWAKKQIAQYPAGRQASAAIAILWRAQEQNGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM YIR+LEIATFYT FQL PVG +AH+QVCGTTPC LRG E ++ VC+++
Sbjct: 61  AIRTVADMLDMPYIRMLEIATFYTMFQLQPVGRKAHIQVCGTTPCRLRGAEDILAVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H + DG  SWEEVEC G+CVNAPMV+I KDTYEDLT E   +++D F++GQ   
Sbjct: 121 IHHEPFHLSKDGDFSWEEVECLGSCVNAPMVLIWKDTYEDLTKENFGKVLDGFASGQ--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +PGPQIDR  SAP GG T+L        G++ 
Sbjct: 179 PKPGPQIDRQFSAPVGGPTTLNTAAKGDGGRRS 211


>gi|332031615|gb|EGI71087.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Acromyrmex echinatior]
          Length = 243

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E++     F F+E +   ++ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEQDNPNIPFEFNEANKKRIDALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ILD+  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + ++       
Sbjct: 91  MHKVAEILDVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDSIVNAVTKAT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+AF   +G+  
Sbjct: 150 NCELGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATTIINAFK--KGERP 207

Query: 181 RPGPQI-DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGPQ   R ++ PAGGLTSL        G   + D
Sbjct: 208 PPGPQNCSRFAADPAGGLTSLT-TPPPGPGFGIRSD 242


>gi|225719606|gb|ACO15649.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R + E  +   F F+ E+      ++S YP    ++A +PLL  AQ Q G W+  +
Sbjct: 26  IFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPIS 85

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+++ M  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ 
Sbjct: 86  AMNHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILQACKDN 144

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         D   +  EVEC GACVNAPMV I  D YEDLT + + EI+D    G+   
Sbjct: 145 LGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--K 202

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              GP+  R ++ P GG TSL +      G   + D
Sbjct: 203 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 237


>gi|66534614|ref|XP_393287.2| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Apis mellifera]
          Length = 243

 Score =  287 bits (735), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E +     F F+E +   +  ++  YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDSEVDNPSIPFEFNEANKKRIEALLKIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + ++E      
Sbjct: 91  MHKVAEILNIPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKVT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + K    ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+AF   +G+  
Sbjct: 150 NCKVGEMSADKLFTVSEVECLGACANAPMFQVNDDYYEDLTPESAISIINAFK--KGERP 207

Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGPQ   R ++ PAGGLTSL  +     G   + D
Sbjct: 208 PPGPQNSPRFAADPAGGLTSLT-SPPPGPGFGVRSD 242


>gi|163759538|ref|ZP_02166623.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
 gi|162283135|gb|EDQ33421.1| NADH dehydrogenase subunit E [Hoeflea phototrophica DFL-43]
          Length = 395

 Score =  287 bits (735), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 144/220 (65%), Positives = 163/220 (74%), Gaps = 2/220 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAEE  QP+ F+F+ E A      I +YP  R QSAVIPLLM AQEQ+GWV++ A
Sbjct: 1   MSVRRLAEESVQPAEFAFNREFAAQAKTWIKKYPKERAQSAVIPLLMLAQEQDGWVTKPA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A++L M YIR LE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG E+L+EVCR+KI
Sbjct: 61  IETIADMLGMPYIRALEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSEELMEVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P H N  GTLSWEEVECQGACVNAPMVMI KD YEDLTPERL  IID F  G+ + I
Sbjct: 121 HPEPFHLNESGTLSWEEVECQGACVNAPMVMIFKDAYEDLTPERLAYIIDRFDAGRPEDI 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDN--NSKKRGKKKKDDKIS 218
             GPQI R  SAPA GLTSL +      KR  K    K S
Sbjct: 181 NTGPQIKRTFSAPASGLTSLTEEIKPGSKRAAKSTKAKAS 220


>gi|119480765|ref|XP_001260411.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119408565|gb|EAW18514.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 268

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R          F FSE++   V+E++ RYPP   + AV+PLL   Q Q G+ S + 
Sbjct: 39  LAVHRNKPNNNPSIPFKFSEQNMKLVDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G  K++E  + 
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +     H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++ ++ A       
Sbjct: 158 HLGITAGHTTEDGLFTFIEVECLGACVNAPMVQINDDYYEDLTPESIKTLLTALKESATA 217

Query: 175 ----GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                +     PGP   R +   + GLT+L +         +KD  +
Sbjct: 218 AESGKEVKVPAPGPLSGRHTCENSAGLTNLQNPVWDPETMMRKDGAL 264


>gi|26353142|dbj|BAC40201.1| unnamed protein product [Mus musculus]
          Length = 192

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++   +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+AT
Sbjct: 1   KNYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVAT 60

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC
Sbjct: 61  FYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVEC 119

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
            GACVNAPMV I  + YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL
Sbjct: 120 LGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSL 177

Query: 201 LDNNSKKRGKKKKDD 215
            +   K  G   +  
Sbjct: 178 TE-PPKGPGFGVQAG 191


>gi|254500422|ref|ZP_05112573.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
 gi|222436493|gb|EEE43172.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
          Length = 418

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 118/210 (56%), Positives = 143/210 (68%), Gaps = 5/210 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           M+VRRLA E  QP SF F+EE+  W  ++I RYP  R  SAVIPLL RAQEQ  GWVS  
Sbjct: 1   MAVRRLAAE--QPDSFEFTEENLGWAKKLIDRYPAGRQASAVIPLLWRAQEQNDGWVSEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI++C+++
Sbjct: 59  AIRYIADLLDMPNIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEDLIKICKSR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     + DG  SWEEVEC GACVNAPMV I KDTYEDLT E   +++D    G  + 
Sbjct: 119 IAKHMHEISEDGMFSWEEVECLGACVNAPMVQIFKDTYEDLTEESFNKLLDDIDAG--ND 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           + PGPQ  R  S   GG TSL +     +G
Sbjct: 177 VTPGPQNGRRFSMAEGGQTSLTEIEDDTKG 206


>gi|163746201|ref|ZP_02153560.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
 gi|161380946|gb|EDQ05356.1| NADH dehydrogenase subunit E [Oceanibulbus indolifex HEL-45]
          Length = 389

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F+  +  W    I+++P  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPD--QPDSFAFTPANQEWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC+ +I  
Sbjct: 60  HVSEMLGMAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCKERIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  RL EI+D  S G+     P
Sbjct: 120 KPHELSADGRFSWEEVECLGACSNAPMAQIGKDYYEDLTTARLNEILDELSDGR--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P GGLTSL D+ S +
Sbjct: 178 GPQNGRYASEPLGGLTSLTDHESGR 202


>gi|302694579|ref|XP_003036968.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
 gi|300110665|gb|EFJ02066.1| hypothetical protein SCHCODRAFT_45793 [Schizophyllum commune H4-8]
          Length = 257

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 5/214 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R          F F+ E+     E+I+RYPP   ++AVIPLL   Q Q  GW S +
Sbjct: 44  LFVHRDTPYNNPKIPFEFNAENLKRAEEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSIS 103

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +  VA +L M  +RV E+ATFYT F   P+G    VQVC TTPCMLRG   ++    N+
Sbjct: 104 VMNYVARLLGMPPMRVYEVATFYTMFNREPIGEHF-VQVCTTTPCMLRGSTDILNTVCNE 162

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           ++ KP   + DG  +  EVECQGAC NAPM+++G D YEDLTPE  + I+ AFS  +G+ 
Sbjct: 163 LNVKPGGTSKDGKFTVVEVECQGACSNAPMMVVGDDFYEDLTPESTKRILAAFS--KGEK 220

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
            + GPQ +R +S  + GLT+L  +     G+   
Sbjct: 221 PKAGPQSNRQTSENSAGLTALT-SKPYGPGEFCT 253


>gi|39936012|ref|NP_948288.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
 gi|192291667|ref|YP_001992272.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
 gi|39649866|emb|CAE28388.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
           CGA009]
 gi|192285416|gb|ACF01797.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 249

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 149/202 (73%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+F+ E+  W  + I++YPP R  SAVI ++ RAQEQ G W+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+N+
Sbjct: 61  AIRTVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F++G  + 
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPETLNKVLDGFASG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
             PGPQ  R  +AP  G T+L 
Sbjct: 179 PTPGPQNGRQHAAPMTGPTTLK 200


>gi|149037364|gb|EDL91795.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, isoform CRA_b
           [Rattus norvegicus]
          Length = 227

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+ATFYT 
Sbjct: 40  RIEAIVRNYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 99

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC GAC
Sbjct: 100 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 158

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
           VNAPMV I  D YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL +  
Sbjct: 159 VNAPMVQINDDYYEDLTPKDIEEIIDELRAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 215

Query: 205 SKKRGKKKKDD 215
            K  G   +  
Sbjct: 216 PKGPGFGVQAG 226


>gi|299753881|ref|XP_001833598.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298410506|gb|EAU88143.2| NADH-ubiquinone oxidoreductase subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 6/214 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R          F F   +     E+I+RYPP   ++AVIPLL   Q Q  GW S +
Sbjct: 31  LFVHRDTPYNNPKIPFEFDAANMKRAQEIIARYPPQYKKAAVIPLLDLGQRQNKGWTSIS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +  VA +L+M  +RV E+ATFYT F   P+G    +Q+C TTPCML G   ++      
Sbjct: 91  VMNYVAKLLEMPAMRVYEVATFYTMFNREPIGQNF-IQLCTTTPCMLCGSTNILNTISEH 149

Query: 120 IH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +   KP     DG  +  EVECQGAC NAPM+++  D YEDLTPE  ++I+DAF+ G+  
Sbjct: 150 LGGIKPGQTTKDGKFTLVEVECQGACSNAPMMVVNDDYYEDLTPESTKKILDAFARGE-- 207

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
             +PGPQ  R +S  + GLT+L        G+  
Sbjct: 208 KPKPGPQSSRHTSENSAGLTNLT-GKPYGPGEFC 240


>gi|86749695|ref|YP_486191.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
 gi|86572723|gb|ABD07280.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 249

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 152/202 (75%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+F+EE+  W    I++YPP+R  SAVI ++ RAQEQ G W+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPARQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V++++L+M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+++
Sbjct: 61  AIRVISDMLEMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F+ G  + 
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFAAG--NP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
            +PGPQ  R  +AP  G T+L 
Sbjct: 179 PKPGPQNGRQYAAPITGPTTLK 200


>gi|289619209|emb|CBI54477.1| unnamed protein product [Sordaria macrospora]
          Length = 271

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 6/208 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R   +      F FS E+   + E+I RYPP   ++AV+PLL   Q Q G+ S + +  
Sbjct: 57  HRNTPDNNPDIPFKFSAENEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISVMNE 116

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
           VA +L+M  +RV E+A+FYT +  +PVG + HVQ C TTPC L   G + +++  +  + 
Sbjct: 117 VARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKEHLG 175

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGD 178
            K      DG  ++ EVEC GAC NAPMV I  D +EDLTPE + +++ A     T    
Sbjct: 176 IKQGETTPDGLFTFLEVECLGACANAPMVQINDDYFEDLTPETITQVLVALKESVTDASK 235

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSK 206
             +PGPQ  R +   A GLTSL      
Sbjct: 236 APKPGPQSGRQTCENAAGLTSLTSEPYG 263


>gi|169783796|ref|XP_001826360.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238493623|ref|XP_002378048.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|83775104|dbj|BAE65227.1| unnamed protein product [Aspergillus oryzae]
 gi|220696542|gb|EED52884.1| NADH-ubiquinone dehydrogenase 24 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 270

 Score =  285 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 122/227 (53%), Gaps = 11/227 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R          F+F+E++   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G  K++E  + 
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNREPVG-KYFVQLCTTTPCQLGGCGSTKILEAIQE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +   P H   DG  +  EVEC GACVNAPMV I  D YEDLTPE ++ ++ A       
Sbjct: 158 HLGITPGHTTEDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPESMKTLLTALKESATA 217

Query: 174 --TGQG-DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
              G+      PGP   R +   + GLT+L +         +KD  +
Sbjct: 218 TDAGKTVQIPAPGPMSGRNTCENSAGLTNLKNPVWDPETMMRKDGAL 264


>gi|209964546|ref|YP_002297461.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
           centenum SW]
 gi|209958012|gb|ACI98648.1| NADH-quinone oxidoreductase chain E, putative [Rhodospirillum
           centenum SW]
          Length = 210

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/189 (50%), Positives = 128/189 (67%), Gaps = 4/189 (2%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           SFSF++E+      +I++YPP R QSAV+PLL  AQ Q G W+SR AIE VA++L+M  I
Sbjct: 12  SFSFTQENLELARRIIAKYPPGRQQSAVMPLLDLAQRQNGNWLSRPAIEYVADMLEMPRI 71

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R +E+A+FYT + L PVG +  VQVC TTPC LRG + ++  C  K+  K     +DG  
Sbjct: 72  RAMEVASFYTMYNLKPVG-KHFVQVCTTTPCWLRGSDDILHTCEKKLGIKAGETTADGQF 130

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  E EC GACVNAPMV IG   +EDLTPE +E I+DA +  + +T +PGPQ  RI+S P
Sbjct: 131 TVVEAECLGACVNAPMVQIGDSYFEDLTPEAMEAILDALA--RDETPKPGPQNGRIASCP 188

Query: 194 AGGLTSLLD 202
           +GG T+L +
Sbjct: 189 SGGPTTLTE 197


>gi|85103526|ref|XP_961535.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|730212|sp|P40915|NDUV2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial; Flags: Precursor
 gi|577595|emb|CAA54990.1| NUO-24 [Neurospora crassa]
 gi|18376247|emb|CAD21361.1| NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PRECURSOR (Nuo-24)
           [Neurospora crassa]
 gi|28923082|gb|EAA32299.1| NADH:ubiquinone oxidoreductase 24kD subunit [Neurospora crassa
           OR74A]
 gi|1092497|prf||2024210B NADH/ubiquinone oxidoreductase:SUBUNIT=24kD
          Length = 263

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 6/211 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FS ++   + E+I RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 46  LMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHGFCSISV 105

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG + HVQ C TTPC L   G + +++  + 
Sbjct: 106 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDVIVKAIKE 164

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  K      DG  ++ EVEC GAC NAPMV I  D +EDLTPE +++++ A      D
Sbjct: 165 HLGIKQGETTPDGLFTFIEVECLGACANAPMVQINDDYFEDLTPETIKQVLSALKESVTD 224

Query: 179 T---IRPGPQIDRISSAPAGGLTSLLDNNSK 206
                +PGPQ  R +   A GLTSL      
Sbjct: 225 VSKAPQPGPQSGRQTCENAAGLTSLTSEPYG 255


>gi|225719208|gb|ACO15450.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor [Caligus
           clemensi]
          Length = 238

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R + E  +   F F+ E+      ++S YP    ++A +PLL  AQ Q G W+  +
Sbjct: 26  IFVHRDSPENNEKLPFEFNAENKKRAEAIMSIYPEGHTKAATLPLLDLAQRQNGGWLPIS 85

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+++ M  +RV E+ATFYT F  +PVG + HVQVC T PC LRG +++++ C++ 
Sbjct: 86  AMNHVADVIGMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTAPCWLRGSDEILQACKDN 144

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         D   +  EVEC GACVNAPMV I  D YEDLT + + EI+D    G+   
Sbjct: 145 LGVSTGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMNEILDDLRGGK--K 202

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              GP+  R ++ P GG TSL +      G   + D
Sbjct: 203 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 237


>gi|89067788|ref|ZP_01155242.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
 gi|89046758|gb|EAR52813.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Oceanicola
           granulosus HTCC2516]
          Length = 425

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/207 (56%), Positives = 143/207 (69%), Gaps = 4/207 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHHE--QPESFAFTAENQAWAEAQITKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L MAYIR LE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E+L+E+C+ KI  
Sbjct: 60  AVAEMLGMAYIRALEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEELMELCKTKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLTP +LE ++D  + G+     P
Sbjct: 120 RPHELSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTPGKLEGLLDEMAAGR--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
           GPQ  R +S PA GLTSL      + G
Sbjct: 178 GPQNGRYASEPASGLTSLKAYEEGRDG 204


>gi|290562774|gb|ADD38782.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Lepeophtheirus
           salmonis]
          Length = 240

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R + E  +   F F+ ++      ++S YP    ++A +PLL  AQ Q G W+  +
Sbjct: 28  IFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPIS 87

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+ +DM  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ 
Sbjct: 88  AMNYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDN 146

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++    G    
Sbjct: 147 LGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKVG--TK 204

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              GP+  R ++ P GG TSL +      G   + D
Sbjct: 205 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 239


>gi|148706376|gb|EDL38323.1| mCG9061, isoform CRA_d [Mus musculus]
          Length = 238

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 111/191 (58%), Gaps = 4/191 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  ++  YP     +AV+P+L  AQ Q GW+  +A+  VA +L +  +RV E+ATFYT 
Sbjct: 51  RIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTM 110

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +   PVG + H+QVC TTPCMLR  + ++E  + K+  K      D   +  EVEC GAC
Sbjct: 111 YNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKLGIKVGETTPDKLFTLIEVECLGAC 169

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNN 204
           VNAPMV I  + YEDLTP+ +EEIID    G+    +PGP+  R    PAGGLTSL +  
Sbjct: 170 VNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VPKPGPRSGRFCCEPAGGLTSLTE-P 226

Query: 205 SKKRGKKKKDD 215
            K  G   +  
Sbjct: 227 PKGPGFGVQAG 237


>gi|255941184|ref|XP_002561361.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585984|emb|CAP93721.1| Pc16g10510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 268

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 118/223 (52%), Gaps = 9/223 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R          F FSE++    +E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 38  LSVHRNKVNNNPSLPFKFSEQNLKLADEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G   +++    
Sbjct: 98  MNEVARMLEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSTAIVKAITE 156

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +   P H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE ++ I+ A       
Sbjct: 157 HLGITPGHTTEDGLFTFTEVECLGACVNAPMVQINDDYYEDLTPESIKTILTALKDSATA 216

Query: 174 TGQGDT-IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           TG G     PGP   R +   + GLT+L D          + D
Sbjct: 217 TGAGAKIPAPGPLSGRDTCENSAGLTNLTDVPEWNPETMMRKD 259


>gi|260950659|ref|XP_002619626.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
 gi|238847198|gb|EEQ36662.1| hypothetical protein CLUG_00786 [Clavispora lusitaniae ATCC 42720]
          Length = 237

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 2/215 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+ Q   F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 24  ISVHRDTKEDNQQMPFEFTAENLKRAKEIIAKYPPQYKKGACMPLLDLGQRQIGFTSISV 83

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G +++++   + +
Sbjct: 84  MNYVAKMLDMPPMRVYEVATFYTMYMRHPMG-KYNIQVCTTTPCQLCGSDEIMKAVTDFL 142

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ +G D +EDLTPE+  E++     G+    
Sbjct: 143 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVGDDYHEDLTPEKTVELLQKLKDGK-PVE 201

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           + GP   R S  P  G   L         K  + D
Sbjct: 202 KAGPVSGRHSCEPLSGRKVLKAAEPTDIRKFTRAD 236


>gi|242007620|ref|XP_002424632.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212508098|gb|EEB11894.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 242

 Score =  284 bits (728), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 4/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+    +F F+ E+      +++ YP    ++A++PLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPDVNFDFTPENMKRAEAIMAIYPEGHKRAALLPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++  +RV E+ATFYT +   P+G + H+QVC TTPC LR  + ++ V + K+
Sbjct: 91  MHKVAEILNLPKMRVYEVATFYTMYMRKPMG-KYHIQVCTTTPCWLRDSDSIMNVIKKKL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           +        D   +  EVEC GACVNAPMV I  D YEDLT E + +I++  + G+    
Sbjct: 150 NINVGETTKDKLFTLSEVECLGACVNAPMVQINDDYYEDLTEESMNQILEDLANGR--KP 207

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           + GPQ  R S  P GGLTSL        G   + D
Sbjct: 208 KAGPQSGRCSCEPHGGLTSLTTEPPG-PGVGVRSD 241


>gi|158423295|ref|YP_001524587.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158330184|dbj|BAF87669.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 224

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 119/209 (56%), Positives = 141/209 (67%), Gaps = 7/209 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA E  QP+SF+FS E+  W +  I++YP  R  SAVIPLL +AQEQ G W+   
Sbjct: 1   MSVRRLAAE--QPASFAFSPENEAWADRQIAKYPEGRQASAVIPLLWKAQEQFGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI VVA+ L MAYIRVLEIATFYT F L PVG R  VQ+CGTTPC LRG +KL EVC  K
Sbjct: 59  AIRVVADKLGMAYIRVLEIATFYTMFNLEPVG-RHFVQLCGTTPCALRGADKLKEVCHRK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +  H   DG LSW EVEC GAC NAPMV +  D +EDLTPE LE+++D    G+   
Sbjct: 118 IGPER-HVTEDGALSWLEVECLGACANAPMVQVNYDYFEDLTPESLEKLLDDLQAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           ++ G Q  R +SAP GG TSL D +   R
Sbjct: 175 VKTGSQTGRQASAPEGGRTSLTDPSLYNR 203


>gi|121602159|ref|YP_989074.1| NADH dehydrogenase subunit E [Bartonella bacilliformis KC583]
 gi|120614336|gb|ABM44937.1| NADH dehydrogenase (quinone), E subunit [Bartonella bacilliformis
           KC583]
          Length = 225

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 139/206 (67%), Positives = 163/206 (79%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP  FSF++E+ +W    I++YP  R QSAVIPLLMRAQEQEGWV+RAA
Sbjct: 1   MSVRRLADDIHQPEEFSFTKENQLWAQNTIAKYPIGREQSAVIPLLMRAQEQEGWVTRAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE +A +L MAYIRVLE+ATFYTQFQL PVGTRAH+QVCGTTPCMLRG  +LI++C+ KI
Sbjct: 61  IEHIAQMLSMAYIRVLEVATFYTQFQLKPVGTRAHIQVCGTTPCMLRGSTELIKICQKKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H +P   N +GTLSWEEVEC GACVNAPMVMI KDTYEDLT ERLEEIIDAF   +G  +
Sbjct: 121 HPEPFVTNQEGTLSWEEVECLGACVNAPMVMIFKDTYEDLTAERLEEIIDAFEANKGFEV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSK 206
             GPQ  R SS P  GLTSL++ +  
Sbjct: 181 AVGPQNSRKSSEPINGLTSLINEDED 206


>gi|50406285|ref|XP_456621.1| DEHA2A06820p [Debaryomyces hansenii CBS767]
 gi|49652285|emb|CAG84577.1| DEHA2A06820p [Debaryomyces hansenii]
          Length = 238

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 119/215 (55%), Gaps = 3/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +S+ R  +E+ +  SF F+ E+    NE+I++YPP   ++AV+PLL   Q Q G+ S A 
Sbjct: 26  ISIHRDTKEDNKNMSFEFNSENLKRANEIIAKYPPQYKKAAVMPLLDLGQRQTGFTSIAV 85

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G +++++   + +
Sbjct: 86  MNYVAKYLDMPPMRVYEVATFYTMYNRKPMG-KYNIQVCTTTPCQLCGSDEVMDAITSHL 144

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ +  D +EDLT E+  +++     G+    
Sbjct: 145 KIKPGQTTPDKLFTLQEVECLGACVNAPMLALNDDFHEDLTAEKTIDLLKTLQAGK--EP 202

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           + GP   R +  P  G   LL           + D
Sbjct: 203 KAGPVSGRDTCEPFSGAKVLLGEKPFDVSTVTRSD 237


>gi|50549567|ref|XP_502254.1| YALI0D00737p [Yarrowia lipolytica]
 gi|6689656|emb|CAB65523.1| subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49648122|emb|CAG80440.1| YALI0D00737p [Yarrowia lipolytica]
          Length = 243

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 118/216 (54%), Gaps = 4/216 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           SV R  E       F FS E+     EVI++YPP   ++AV+PLL   Q Q G+ S + +
Sbjct: 31  SVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVM 90

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA +L+M  +RV E+ATFYT +  +P+G R H+Q+C TTPC L G + ++E  +N ++
Sbjct: 91  NYVAKLLEMPPMRVYEVATFYTMYNRTPMG-RYHLQICTTTPCQLCGSDGIMEAVQNTLN 149

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            KP     D   +  EVEC GACVNAPM+ I  D YEDLTPE   ++++    G+  T  
Sbjct: 150 IKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPT-- 207

Query: 182 PGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
           PGP+   R    PA G   LL           ++  
Sbjct: 208 PGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI 243


>gi|114764723|ref|ZP_01443908.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
 gi|114542923|gb|EAU45944.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
          Length = 382

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 116/206 (56%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F++ +  W    IS+YP  R  SAVIPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPESFAFTQANMAWAEGQISKYPAGRQASAVIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDMAYIRVLE+ATFY  FQL PVG+ AHVQ+CGTT CM+ G E L+ VC++KI  
Sbjct: 60  AVAEMLDMAYIRVLEVATFYFMFQLQPVGSVAHVQICGTTTCMICGAEDLMAVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EI+D  + G+     P
Sbjct: 120 KAHEVSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLSEILDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R SS P GG   L ++   + 
Sbjct: 178 GPQNGRYSSEPKGGPVVLTEHVEGRA 203


>gi|91977352|ref|YP_570011.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
 gi|91683808|gb|ABE40110.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 249

 Score =  283 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 150/202 (74%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+F+EE+  W    I++YPP R  SAVI ++ RAQEQ G W+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTEENLAWAKREITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI V+ ++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+++
Sbjct: 61  AIRVIGDMLGMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKSR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  PLH ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE L +++D F +G  + 
Sbjct: 121 IHHDPLHLSADGDFSWEEVECAGACVNAPMVQIWKDTYEDLTPESLNKVLDGFVSG--NK 178

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
            +PGPQ  R  +AP  G T+L 
Sbjct: 179 PKPGPQNGRQYAAPISGPTTLK 200


>gi|316933896|ref|YP_004108878.1| NADH-quinone oxidoreductase subunit E [Rhodopseudomonas palustris
           DX-1]
 gi|315601610|gb|ADU44145.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score =  283 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 122/222 (54%), Positives = 152/222 (68%), Gaps = 8/222 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLA +E QP SF+F+ E+  W  + I++YPP R  SAVI ++ RAQEQ G W+  A
Sbjct: 1   MSVRRLAPKELQPESFAFTAENLAWAQKEITKYPPGRQFSAVIAIMWRAQEQCGGWLPEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LE+ATFYT FQL+PVG +AHVQVCGTTPC LRG  +LIEVC+N+
Sbjct: 61  AIRAVADMLQMPHIRALEVATFYTMFQLNPVGKKAHVQVCGTTPCRLRGAGELIEVCKNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMV I KD YEDLTPE L +++D F++G    
Sbjct: 121 IHHDPFHLSADGDFSWEEVECAGACVNAPMVQIFKDVYEDLTPETLNKVLDGFASGH--P 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLD-----NNSKKRGKKKKDDK 216
            +PGPQ  R  +AP  G T+L             G    DD+
Sbjct: 179 PQPGPQNGRQHAAPITGPTTLKTGGINVAPIDANGPALTDDE 220


>gi|46202358|ref|ZP_00208486.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 202

 Score =  283 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 98/202 (48%), Positives = 128/202 (63%), Gaps = 8/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS        ++P SF+F+ E        I++YP  R QSAV+PLL  AQ QEGWVSRAA
Sbjct: 1   MSNHS-----YEPESFAFTPEYLEKAKVFIAKYPAGRQQSAVMPLLDLAQRQEGWVSRAA 55

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +EV+A +LDMA IRV E+ATFYT +   PVGT  HVQVC   PCMLRG ++++   +  +
Sbjct: 56  MEVIAEMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDEVVAAAKAAL 114

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +     +DG  +  EVEC GACVNAPM+ I  D YEDL+ E  + +++AF  G+  T 
Sbjct: 115 GVEFGEMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLSAETTKAVLEAFKRGE--TP 172

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGPQ  R  S PAGG TSL +
Sbjct: 173 KPGPQNGRQFSCPAGGPTSLTE 194


>gi|159043862|ref|YP_001532656.1| NADH dehydrogenase subunit E [Dinoroseobacter shibae DFL 12]
 gi|157911622|gb|ABV93055.1| NADH-quinone oxidoreductase, E subunit [Dinoroseobacter shibae DFL
           12]
          Length = 402

 Score =  283 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP+ F+F+ E+  W    ++++P  R  SA+IP+L RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHAE--QPADFAFTPENEAWALTQMTKFPEGRQASAIIPILWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++LDM YIR LE+ATFY  FQL PVG+ AH+Q+CGTT CM+ G E L+ VC+ KI  
Sbjct: 60  YVADMLDMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCMICGAEDLVAVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT E    ++D  + G+     P
Sbjct: 120 RAHQLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTVESFSALLDRMAAGE--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R +S PAGGLTSL +  + K 
Sbjct: 178 GPQNGRYTSEPAGGLTSLTEYEAGKD 203


>gi|254487093|ref|ZP_05100298.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
 gi|214043962|gb|EEB84600.1| NADH dehydrogenase i, e subunit [Roseobacter sp. GAI101]
          Length = 421

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L +AYIR LE+ATFY  FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  HVSEMLGLAYIRGLEVATFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    + DG  SWEEVEC GAC NAPM  IGKD YEDLT E    +ID  + G+     P
Sbjct: 120 KAHQISDDGKFSWEEVECLGACSNAPMAQIGKDYYEDLTTEGFAAMIDDMAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL D +S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDYDSGK 202


>gi|126729554|ref|ZP_01745367.1| ATP synthase subunit E [Sagittula stellata E-37]
 gi|126709673|gb|EBA08726.1| ATP synthase subunit E [Sagittula stellata E-37]
          Length = 242

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/201 (55%), Positives = 139/201 (69%), Gaps = 4/201 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF F+E +  W  E I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFEFTEANLAWAKEQITKYPAGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL P G+ AH+Q+CGTT CM+ G E L+ VCR+KI  
Sbjct: 60  YVSEMLGMAYIRGLEVATFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLMAVCRDKISA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   + DG  SWEEVEC GAC NAPM  IGKD YEDLT E+L  ++DA    +G+  +P
Sbjct: 120 KPHTLSEDGRFSWEEVECLGACTNAPMAQIGKDYYEDLTAEKLGALLDALD--KGEVPQP 177

Query: 183 GPQIDRISSAPAGGLTSLLDN 203
           GPQ  R +S P GG T+L + 
Sbjct: 178 GPQNGRFASEPLGGATTLTEY 198


>gi|83311882|ref|YP_422146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82946723|dbj|BAE51587.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 202

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/202 (49%), Positives = 128/202 (63%), Gaps = 8/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS        ++P SF+F+ E        +++YP  R QSAV+PLL  AQ QEGWVSRAA
Sbjct: 1   MSNHS-----YEPESFAFTPEYLEKAKAFVAKYPVGRQQSAVMPLLDLAQRQEGWVSRAA 55

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +EV+A +LDMA IRV E+ATFYT +   PVGT  HVQVC   PCMLRG + ++   +  +
Sbjct: 56  MEVIAEMLDMAPIRVEEVATFYTMYNRKPVGT-FHVQVCTNLPCMLRGSDDVVAAAKAAL 114

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +     +DG  +  EVEC GACVNAPM+ I  D YEDLTPE  + +++AF  G+  T 
Sbjct: 115 GVEFGDMTADGKFTLSEVECLGACVNAPMMQINDDYYEDLTPETTKAVLEAFKRGE--TP 172

Query: 181 RPGPQIDRISSAPAGGLTSLLD 202
           +PGPQ  R  S PAGG TSL +
Sbjct: 173 KPGPQNGRQFSCPAGGPTSLTE 194


>gi|328543690|ref|YP_004303799.1| NADH-quinone oxidoreductase, E subunit subfamily [polymorphum
           gilvum SL003B-26A1]
 gi|326413434|gb|ADZ70497.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Polymorphum gilvum SL003B-26A1]
          Length = 378

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/211 (56%), Positives = 144/211 (68%), Gaps = 5/211 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           M+VRRLA E  QP  F+F+ ++  W  +VI RYP  R  SAVIPLL RAQEQ  GWV   
Sbjct: 1   MAVRRLAAE--QPDHFAFTADNLAWAKKVIDRYPAGRQASAVIPLLWRAQEQNDGWVCEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L M +IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E LI VC++K
Sbjct: 59  AIRYIADMLGMPHIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGAEDLIRVCKSK 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I       ++DG  SWEEVEC GACVNAPMV I KDTYEDLTPE LE++I+  + G+   
Sbjct: 119 IAAHAHDLSADGDFSWEEVECLGACVNAPMVQIFKDTYEDLTPESLEKLIEDIAAGR--E 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
           + PGPQ  R  S P GG TSL +      G 
Sbjct: 177 VTPGPQNGRRFSMPEGGATSLTEIEDDTAGA 207


>gi|110680465|ref|YP_683472.1| NADH dehydrogenase subunit E [Roseobacter denitrificans OCh 114]
 gi|109456581|gb|ABG32786.1| NADH-quinone oxidoreductase chain E [Roseobacter denitrificans OCh
           114]
          Length = 359

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHPD--QPDSFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L ++YIR LE+ATFY  FQL PVG  AH+QVCGTT CM+ G E L+ VC+ KI +
Sbjct: 60  HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLVAVCQEKIAR 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   + DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ EIID  + G+     P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202


>gi|326471327|gb|EGD95336.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326479421|gb|EGE03431.1| NADH-ubiquinone dehydrogenase 24 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 267

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R          F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 40  LHVHRNTPSNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176
            +          DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA      
Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218

Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                         PGP   R +   + GLTSL +         +KD ++
Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267


>gi|126740380|ref|ZP_01756068.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
 gi|126718516|gb|EBA15230.1| NADH dehydrogenase subunit E [Roseobacter sp. SK209-2-6]
          Length = 384

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    +++YP  R  SAVIPLL RAQEQEGWVS+ A+E
Sbjct: 2   LRRLHSE--QPESFAFTADNQKWAEAQLTKYPEGRQASAVIPLLWRAQEQEGWVSKPALE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQ+ P G+ AHVQ+CGTT CM+ G E L+ +C+ KI +
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLVAICKEKIAE 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E    ++D  + G+   + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAHMLDDLAAGK--KVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202


>gi|302509584|ref|XP_003016752.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
 gi|291180322|gb|EFE36107.1| hypothetical protein ARB_05044 [Arthroderma benhamiae CBS 112371]
          Length = 267

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R          F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 40  LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176
            +          DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA      
Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218

Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                         PGP   R +   + GLTSL +         +KD ++
Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267


>gi|171691979|ref|XP_001910914.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945938|emb|CAP72739.1| unnamed protein product [Podospora anserina S mat+]
          Length = 260

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F F++++   + E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 43  LMVHRNTPDNNPSIPFKFTDQNEKIITEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 102

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+A+FYT +  +PVG + HVQ C TTPC L   G + +++  + 
Sbjct: 103 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKE 161

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG--- 175
            +  K      DG  ++ EVEC GACVNAPMV I  + YEDLTPE  ++++ A       
Sbjct: 162 HLGIKQGETTPDGLFTFIEVECLGACVNAPMVQINDEYYEDLTPETTKQLLTALKESLND 221

Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
                +PGP   R +   + GLT+L          + 
Sbjct: 222 ASKAPKPGPVSGRDTCENSAGLTNLTSEPWGVETTRS 258


>gi|327303102|ref|XP_003236243.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326461585|gb|EGD87038.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Trichophyton rubrum
           CBS 118892]
          Length = 267

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R          F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 40  LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176
            +          DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA      
Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALRASAV 218

Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                         PGP   R +   + GLTSL +         +KD ++
Sbjct: 219 AAENGTQSSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 267


>gi|146420905|ref|XP_001486405.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389820|gb|EDK37978.1| hypothetical protein PGUG_02076 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 251

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  + +     F F+ ++     E+I++YPP   ++AV+PLL   Q Q G+ + + 
Sbjct: 39  ISVHRNTKVDNPDIPFEFNADNLKRAKEIIAKYPPQYKKAAVMPLLDLGQRQHGFTAISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + H+QVC TTPC L G +++++  +N +
Sbjct: 99  MNYVAKMLDMPPMRVYEVATFYTMYNRKPMG-KYHLQVCTTTPCQLCGSDEVMDAIKNHL 157

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + EEVEC GACVN PM+ +  D  EDLT E+  E++     G+   +
Sbjct: 158 KIKPGQTTPDNLFTLEEVECLGACVNGPMMGVNDDYAEDLTGEKTVELLKNLQEGK--PM 215

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             GP   R S  P  G   LL        K  + D
Sbjct: 216 HVGPVSGRDSCEPFSGPKVLLSKEPHDIRKVTRSD 250


>gi|99080587|ref|YP_612741.1| NADH dehydrogenase subunit E [Ruegeria sp. TM1040]
 gi|99036867|gb|ABF63479.1| NADH-quinone oxidoreductase E subunit [Ruegeria sp. TM1040]
          Length = 398

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    +++YP  R  SAVIP+L RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWISKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL P G+ AH+Q+CGTT CM+ G E L+ +C++KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQICGTTSCMICGAEDLVAICKDKISA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   + DG  SWEEVEC G+C NAPM  IGKD YEDLT     +++D  + G+   + P
Sbjct: 120 KPHTLSEDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAASFTKLLDDLAAGK--PVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P  GLTSL +  + K 
Sbjct: 178 GPQNGRYAAEPKAGLTSLTEYEAGKP 203


>gi|303312197|ref|XP_003066110.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105772|gb|EER23965.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320040098|gb|EFW22032.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 264

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173
            +          D   +  EVEC GACVNAPMV I  D YEDLTPE   ++++A      
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217

Query: 174 TGQGDT----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            G+         PGP   R S   + GLTSL  +        +KD ++
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLT-SPLWSTETLRKDGEL 264


>gi|119193296|ref|XP_001247254.1| hypothetical protein CIMG_01025 [Coccidioides immitis RS]
          Length = 264

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F FSE++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNTPENNPSIPFKFSEQNLKVIDEILKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173
            +          D   +  EVEC GACVNAPMV I  D YEDLTPE   ++++A      
Sbjct: 158 HLGVSSHGQTTPDKLFTVLEVECLGACVNAPMVQINDDYYEDLTPETAVQLLNALKESAL 217

Query: 174 TGQGDT----IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            G+         PGP   R S   + GLTSL  +        +KD ++
Sbjct: 218 AGESGKKVNIPSPGPMSGRESCENSAGLTSLT-SPLWSTETLRKDGEL 264


>gi|320592175|gb|EFX04614.1| NADH-ubiquinone dehydrogenase [Grosmannia clavigera kw1407]
          Length = 272

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 9/220 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FS ++   + E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 52  LQVHRNTADNNPDIPFQFSADNKNVIQEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 111

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG +  VQ C TTPC L   G + +++  + 
Sbjct: 112 MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDVIVKAIKE 170

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +  K     +DG  ++ EVEC GACVNAPM+ I    YEDLTPE ++ ++         
Sbjct: 171 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDHYYEDLTPETVKSLLSGLKAAALD 230

Query: 175 --GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
             G+    + GP   R S   + GLTSL D        + 
Sbjct: 231 PSGKTPEPKVGPTTGRHSCENSAGLTSLTDKPWGVETTRS 270


>gi|115524532|ref|YP_781443.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
 gi|115518479|gb|ABJ06463.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 249

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/203 (60%), Positives = 151/203 (74%), Gaps = 3/203 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRRLA +E QP SF+F++E+  W ++ +++YPP R  SAVI ++ RAQEQ G W+S A
Sbjct: 1   MAVRRLAPKELQPESFAFTDENLAWAHQQVAKYPPGRQASAVIAIMWRAQEQLGGWISEA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++LDM +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 61  AIRAVADLLDMPHIRALEIATFYTMFQLHPVGRKAHVQVCGTTPCRLRGAEDIIKVCQNR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH  P H ++DG  SWEEVEC GACVNAPMVMIGKDTYEDLTPE   +++D    G G  
Sbjct: 121 IHHDPSHLSADGNFSWEEVECLGACVNAPMVMIGKDTYEDLTPENFGKVLDGI--GSGHP 178

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PGPQ  R  +AP GG   L D
Sbjct: 179 PKPGPQGGRQFAAPEGGPRVLKD 201


>gi|254469750|ref|ZP_05083155.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
 gi|211961585|gb|EEA96780.1| NADH dehydrogenase i chain e protein [Pseudovibrio sp. JE062]
          Length = 266

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 150/211 (71%), Gaps = 5/211 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRL  E  QP SF FS E+  W  +VI RYP  R  SAV+P+L RAQEQ GWV+  A
Sbjct: 1   MSVRRLHHE--QPESFEFSPENLEWAKKVIERYPEGRQASAVVPILWRAQEQVGWVTEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I V++ +LDM  IRVLE+ATFYT FQL PVG +AH+QVCGTTPC LRG E+LI+VC++KI
Sbjct: 59  IRVISEMLDMPRIRVLEVATFYTMFQLQPVGKKAHIQVCGTTPCQLRGSEELIKVCKSKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            + P   + DG  SWEEVEC GACVNAPMV I KD YEDL  E+ E+++D  + G+   +
Sbjct: 119 SETPHTLSEDGNFSWEEVECLGACVNAPMVQIFKDFYEDLDVEKFEKLLDDIAGGK--PV 176

Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRGK 210
            PGPQ +DRI +AP GG T+LL+     +G 
Sbjct: 177 LPGPQGVDRIFAAPEGGPTTLLNIEDTTKGA 207


>gi|163732061|ref|ZP_02139507.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
 gi|161394359|gb|EDQ18682.1| NADH dehydrogenase subunit E [Roseobacter litoralis Och 149]
          Length = 359

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP +F+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHPD--QPETFAFTPENQAWAEGQITKYPEGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L ++YIR LE+ATFY  FQL PVG  AH+QVCGTT CM+ G E LI VC+ KI +
Sbjct: 60  HVSDMLGLSYIRGLEVATFYFMFQLQPVGAIAHIQVCGTTSCMICGAEDLISVCQEKIAR 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   + DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ EIID  + G+     P
Sbjct: 120 EPHQLSEDGNFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL++ +S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLIEYDSGK 202


>gi|225712256|gb|ACO11974.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 240

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/216 (37%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           + V R + E  +   F F+ ++      ++S YP    ++A +PLL  AQ Q G W+  +
Sbjct: 28  IFVHRDSPENNENIPFEFNADNKKRAGAIMSIYPEGHKKAATLPLLDLAQRQNGGWLPIS 87

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+ +DM  +RV E+ATFYT F  +PVG + HVQVC TTPC LRG +++++ C++ 
Sbjct: 88  AMNYVADFIDMPRMRVYEVATFYTMFIRNPVG-KYHVQVCTTTPCWLRGSDEILKACKDN 146

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         D   +  EVEC GACVNAPMV I  D YEDLT + ++EI++         
Sbjct: 147 LGVPVGKMTQDKLFTISEVECLGACVNAPMVQINDDYYEDLTVKDMDEILNELKV--DTK 204

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              GP+  R ++ P GG TSL +      G   + D
Sbjct: 205 PARGPRSSRYAAEPFGGPTSLTE-PPPGPGFGVRSD 239


>gi|302383050|ref|YP_003818873.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193678|gb|ADL01250.1| NADH-quinone oxidoreductase, E subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 222

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/218 (52%), Positives = 151/218 (69%), Gaps = 7/218 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA++  QP+SF+FS+E+   V+  I++YP  R +SAVIP+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLAKD--QPASFAFSKETMKKVDWWIAKYPADRARSAVIPMLWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A+ LDMAYIRVLE+ATFYT F L PVG+ A +QVCGTTPCMLRG  +L++VC+++I
Sbjct: 59  IRAIADKLDMAYIRVLEVATFYTMFMLEPVGSAALIQVCGTTPCMLRGSGELMKVCKSRI 118

Query: 121 HQKPLHR-NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            +K     ++DG   WEEVEC GACVNAPM MI    +EDLT   L +IID F+ G+   
Sbjct: 119 GEK--QTLSADGKFYWEEVECLGACVNAPMAMINDYYFEDLTAADLNQIIDDFAAGK--A 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +PG +IDR++SAP GG  +L D         K   K+
Sbjct: 175 PKPGTRIDRVNSAPEGGPLTLTDPGLYDGTAAKPISKL 212


>gi|116180112|ref|XP_001219905.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88184981|gb|EAQ92449.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 262

 Score =  282 bits (722), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 9/214 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F F++++   + EV+ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 42  LMVHRNTPDNNPDIPFKFTKQNEAIITEVLKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 101

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+A+FYT +  +PVG + HVQ C TTPC L   G + +++  + 
Sbjct: 102 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIKE 160

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +  K     +DG  ++ EVEC GACVNAPM+ I  D YEDLTPE ++ ++ A       
Sbjct: 161 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETIKSLLTALKESVTD 220

Query: 175 -GQ-GDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
            G+     +PGP   R +   + GLT+L      
Sbjct: 221 VGKAAKVPKPGPLSGRDTCENSAGLTNLTSEPWG 254


>gi|315050246|ref|XP_003174497.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311339812|gb|EFQ99014.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 267

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R          F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 40  LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++    
Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITE 158

Query: 119 KIHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ- 176
            +          DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA      
Sbjct: 159 HLGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAV 218

Query: 177 ---------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                         PGP   R +   + GLTSL +         +KD ++
Sbjct: 219 AAENGTQSSVKIPAPGPLSGRQTCENSAGLTSLTE-PLWGNETLRKDGEL 267


>gi|288958985|ref|YP_003449326.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
 gi|288911293|dbj|BAI72782.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
          Length = 215

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 124/191 (64%), Gaps = 4/191 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDM 70
           +P+SF+F+ ++      +I++YP  +  SA +PLL  AQ Q G W+ R A++ VA++L M
Sbjct: 12  EPTSFTFTPDNLELAKRIIAKYPAGKQASACMPLLDVAQRQNGGWLPRVAMDAVADLLGM 71

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
             IRV E+ATFYT +  +PVG R H+QVC TTPC LRG + ++  C+ K+        +D
Sbjct: 72  PRIRVYEVATFYTMYNKNPVG-RHHIQVCTTTPCWLRGSDDVVHACKRKLGIGMGETTAD 130

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           G  +  EVEC GACVNAP+V IG D YED+ PE +E I+DA + G+  T +PG QI R S
Sbjct: 131 GQFTLGEVECSGACVNAPVVQIGDDYYEDVAPEHIERILDALARGE--TPKPGSQIGRQS 188

Query: 191 SAPAGGLTSLL 201
           S P GG T+L 
Sbjct: 189 SEPVGGPTTLK 199


>gi|58265356|ref|XP_569834.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108801|ref|XP_776944.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259626|gb|EAL22297.1| hypothetical protein CNBC0100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226066|gb|AAW42527.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 249

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 118/215 (54%), Gaps = 7/215 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R  +       F F+ E+    +E+I+RYPP   ++A +P+L   Q Q  GW S +
Sbjct: 34  LFVHRDTDYNNPSIPFEFTPENLKRAHEIIARYPPQYKKAAALPILDLGQRQNKGWTSIS 93

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +LDM  +RV E+ATFYT +   PV     VQ+C TTPC L   G  K++E   
Sbjct: 94  VMNAVAKLLDMPKMRVYEVATFYTMYNREPVAPNF-VQLCTTTPCQLGGCGSTKILETIE 152

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           + +   P     DG  ++ EVEC GAC NAPM+ IG D YEDLTPE   +I+DA + G+ 
Sbjct: 153 SHLGVHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDDYYEDLTPETTVKILDALARGE- 211

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
              +PGPQ  R +S  + GLT+L        G+  
Sbjct: 212 -KPKPGPQSGRQTSENSAGLTTLT-TKPYGPGEFC 244


>gi|312116349|ref|YP_004013945.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221478|gb|ADP72846.1| NADH-quinone oxidoreductase, E subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 341

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/209 (52%), Positives = 135/209 (64%), Gaps = 7/209 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MSVRRL  +  QPS F F+ E+  W  E I +YP  R Q+AV+PLL RAQEQ   W+   
Sbjct: 1   MSVRRL--DPNQPSDFEFTPENLAWAKEQIKKYPEGRHQAAVLPLLWRAQEQNDRWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  V ++L M YIRV E+ATFY+ F LSPVG R HVQVCGTTPCMLRG E + +VC+ +
Sbjct: 59  AIRYVGDLLGMPYIRVYEVATFYSMFNLSPVG-RYHVQVCGTTPCMLRGAEDIKKVCKRE 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I         +G  SW EVEC GACVNAPMV I  D YEDLTPE  E ++     G+   
Sbjct: 118 IG-DEREVTPEGVFSWVEVECLGACVNAPMVQINDDYYEDLTPENFEAVLSGLRRGR--E 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           ++PG QI R  SAP GG T+LL  + +K+
Sbjct: 175 VKPGSQIGRQCSAPEGGPTTLLFEDEEKQ 203


>gi|295689624|ref|YP_003593317.1| NADH-quinone oxidoreductase subunit E [Caulobacter segnis ATCC
           21756]
 gi|295431527|gb|ADG10699.1| NADH-quinone oxidoreductase, E subunit [Caulobacter segnis ATCC
           21756]
          Length = 229

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS+ES    +   ++YP +R QSAVIP+L  AQ+QEGW+S  A
Sbjct: 1   MSVRRLAKE--QPASFTFSKESQAKADWWKAKYPAARKQSAVIPMLWLAQKQEGWISEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L+M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L  V ++KI
Sbjct: 59  IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKDKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +  H ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+  + 
Sbjct: 119 G-EANHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +PG    R++S P G + +L D      G   K  KI
Sbjct: 176 KPGSYDGRVASEPKGKIQTLTD-PKLYDGSAAKKIKI 211


>gi|254463640|ref|ZP_05077051.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
 gi|206684548|gb|EDZ45030.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium Y4I]
          Length = 389

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGWV++ AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANLAWAEAQITKYPEGRQASAVIPLLWRAQEQEGWVTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A++L MAYIRVLE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VCR KI  
Sbjct: 60  AIADMLGMAYIRVLEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ   + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--LVAP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGK 202


>gi|86137596|ref|ZP_01056173.1| ATP synthase subunit E [Roseobacter sp. MED193]
 gi|85825931|gb|EAQ46129.1| ATP synthase subunit E [Roseobacter sp. MED193]
          Length = 383

 Score =  282 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    ++++P  R  SAVIPLL RAQEQEGWVS+ AIE
Sbjct: 2   LRRLHSE--QPESFAFTAENQKWAEAQLTKFPEGRQASAVIPLLWRAQEQEGWVSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A++L MAYIRVLE+ +FY  FQ+ P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YIADMLGMAYIRVLEVCSFYFMFQMQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + G+   + P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFGQMLDDLAAGK--KVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYDSGK 202


>gi|46137431|ref|XP_390407.1| hypothetical protein FG10231.1 [Gibberella zeae PH-1]
          Length = 260

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 10/221 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E+      F F+ E+   + E++ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LMVHRNTEDNNPDIPFKFNAENQKVMAEILKRYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG +  VQ+C TTPC L   G + +++  + 
Sbjct: 99  MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KYFVQICTTTPCQLGGCGSDVIVKAIKE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           ++  +     +DG  +  EVEC GACVNAPM+ I  D YEDLTP  +++++ +  +    
Sbjct: 158 ELGIEQGQTTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPASVKDLLKSLRSKATA 217

Query: 179 T-------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
           T        +PGP   R     + GLTSL          +K
Sbjct: 218 TDPSTVNVPKPGPLSGRKDCENSAGLTSLTSEPWGTETTRK 258


>gi|307184300|gb|EFN70758.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Camponotus floridanus]
          Length = 323

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 5/213 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R +E +     F F E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A+  
Sbjct: 114 HRDSEHDNPNIPFEFDEANKKRIKAILAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 173

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA IL++  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + +++      + +
Sbjct: 174 VAEILEVPRMRVYEVATFYTMFNRKPMG-KYHVQICTCTPCWLRDSDAIVKAVTAATNCE 232

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
               ++D   +  EVEC GAC NAPM  +  D YEDLTPE    +I+AF   +G+   PG
Sbjct: 233 IGGTSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPETATAVINAFK--KGERPPPG 290

Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PQ   R ++ PAGGLTSL  +     G   + D
Sbjct: 291 PQNAPRFAADPAGGLTSLT-SPPPGPGFGVRSD 322


>gi|321252918|ref|XP_003192563.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
 gi|317459032|gb|ADV20776.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
          Length = 249

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 7/216 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R  +       F F+ E+    +E+ISRYPP   ++A +P+L   Q Q  GW S +
Sbjct: 34  LFVHRDTDYNNPSIPFEFTPENLKRAHEIISRYPPQYKKAAALPILDLGQRQNKGWTSIS 93

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +LDM  +RV E+ATFYT +   PV     VQ+C TTPC L   G  K++E   
Sbjct: 94  VMNAVAKLLDMPRMRVYEVATFYTMYNREPVAPNF-VQLCTTTPCQLGGCGSTKILETIE 152

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           + +   P     DG  ++ EVEC GAC NAPM+ IG + YEDLTPE   +I+D  + G+ 
Sbjct: 153 SHLGIHPGQTTKDGKFTFVEVECLGACSNAPMMQIGDEYYEDLTPETTIKILDTLARGE- 211

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
              +PGPQ  R +S  + GLT+L        G+   
Sbjct: 212 -KPKPGPQSGRQTSENSAGLTTLT-TKPYGPGEFCT 245


>gi|288856259|ref|NP_001165785.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
           [Nasonia vitripennis]
          Length = 243

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 118/216 (54%), Gaps = 5/216 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  E++     F F   +   +  ++  YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTEQDNPNIPFEFDAANKKRIEAILKIYPEGHKRGAMIPLLDLAQRQHGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL ++ +RV E+ATFYT F   P+G + HVQVC  TPC LR  + +++  +   
Sbjct: 91  MHKVAEILGVSNMRVYEVATFYTMFNRRPMG-KYHVQVCTCTPCWLRDSDSIMKAVKELT 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           + +    + D   S  EVEC GAC NAPM+ +  D YEDLTPE    II+A   G+    
Sbjct: 150 NCEVGGNSPDNMFSISEVECLGACANAPMLQVNDDYYEDLTPETTATIINALKRGE--RP 207

Query: 181 RPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGPQ  +R ++ P GGLTSL  +  K+     + D
Sbjct: 208 APGPQCKNRYAAEPNGGLTSLT-SPPKEPSFGVRSD 242


>gi|259419184|ref|ZP_05743101.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
 gi|259345406|gb|EEW57260.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Silicibacter sp. TrichCH4B]
          Length = 410

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    +++YP  R  SAVIP+L RAQEQEGWV++ A+E
Sbjct: 2   LRRLHHE--QPDSFAFTPANQAWAEAQMTKYPEGRQASAVIPILWRAQEQEGWVTKPALE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL P G+ AH+QVCGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMICGAEDLIAVCKDKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT     ++ID  + G+   + P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAASFTKLIDDLAAGK--AVVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P  GLTSL D  + K 
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDYEADKP 203


>gi|56697618|ref|YP_167987.1| NADH dehydrogenase subunit E [Ruegeria pomeroyi DSS-3]
 gi|56679355|gb|AAV96021.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 414

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    ++++P  R  SAVIPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTPANLAWAEAQVTKFPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVGT AH+Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  AVADMLGMAYIRVLEVASFYFMFQLQPVGTVAHIQICGTTSCMICGAEDLIAVCKEKIAD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT +R  E++D  + G+     P
Sbjct: 120 KPHTLSADGKFSWEEVECLGSCTNAPMAQIGKDYYEDLTAKRFGELLDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL + +S K
Sbjct: 178 GPQNGRYASEPLKGLTSLTEYDSGK 202


>gi|83942670|ref|ZP_00955131.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
 gi|83953909|ref|ZP_00962630.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83841854|gb|EAP81023.1| ATP synthase subunit E [Sulfitobacter sp. NAS-14.1]
 gi|83846763|gb|EAP84639.1| ATP synthase subunit E [Sulfitobacter sp. EE-36]
          Length = 436

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 138/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHPD--QPTSFAFTPANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +L MAYIR LE+ATFY  FQL PVG  AH Q+CGTT CM+ G E LIEVC+ +I  
Sbjct: 60  HVSEMLGMAYIRGLEVATFYFMFQLQPVGEVAHFQICGTTSCMICGAEDLIEVCKERIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT +    +ID  + GQ     P
Sbjct: 120 KAHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTVDGFRAMIDEMAAGQ--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSL D++S K
Sbjct: 178 GPQNGRYASEPLSGLTSLTDHDSGK 202


>gi|114771820|ref|ZP_01449213.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
 gi|114547636|gb|EAU50527.1| NADH dehydrogenase subunit E [alpha proteobacterium HTCC2255]
          Length = 245

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 111/207 (53%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS+RRL     QP SF+FS+E+  W    + +YP  R  SAVIP+L RAQEQEGW+S+ A
Sbjct: 1   MSIRRLH--TTQPDSFTFSDENLKWAQNQMKKYPSGRQASAVIPILWRAQEQEGWLSKPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE V  +L+M +IRVLE+A+FY  FQL+PVG+ AH+QVCGT  CM+ G E LI +C+  I
Sbjct: 59  IEAVGELLEMPFIRVLEVASFYFMFQLAPVGSVAHIQVCGTLSCMICGAEDLIGICKEII 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +KP   + DG LSWEEVEC GAC NAPM  IGKD YEDLT      I++     +G+  
Sbjct: 119 SEKPHELSEDGKLSWEEVECLGACANAPMAQIGKDFYEDLTEASFRNILNQL--LKGEVP 176

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKK 207
            PGPQ  R +S P  GLT+L D NS K
Sbjct: 177 TPGPQNGRYASEPLSGLTTLSDFNSGK 203


>gi|312222072|emb|CBY02012.1| hypothetical protein [Leptosphaeria maculans]
          Length = 297

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 117/254 (46%), Gaps = 43/254 (16%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   ++E++SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 41  LNVHRDTPENNPNIPFKFTAQNEQLIDEIVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT +   PVG + HVQVC TTPCMLR  + +++ C +++
Sbjct: 101 MNEVARLLEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLRDSDAVMKACEDEL 159

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173
                    DG  +  EVEC GAC NAPMV I  D YEDLT +    +I A         
Sbjct: 160 GIHHGETTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYDSTVALIKALRHAAQATG 219

Query: 174 -----------TGQG------------------------DTIRPGPQIDRISSAPAGGLT 198
                       G G                            PGP   R S  PAGGLT
Sbjct: 220 AQPGGKGLVSGAGNGNASNEGAGDKLVNQQGRGYDFGGVKVPTPGPLSGRKSCEPAGGLT 279

Query: 199 SLLDNNSKKRGKKK 212
            L          +K
Sbjct: 280 CLTSEPWGNETLRK 293


>gi|154253661|ref|YP_001414485.1| NADH-quinone oxidoreductase subunit E [Parvibaculum lavamentivorans
           DS-1]
 gi|154157611|gb|ABS64828.1| NADH-quinone oxidoreductase, E subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 208

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 136/203 (66%), Gaps = 7/203 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MSVRRL  +  QP+SF+F+ E+  W  + I++YP  +  SA+IPLL RAQEQ  GW+   
Sbjct: 1   MSVRRL--DPNQPASFAFTAENVEWAKQQIAKYPEGKQASAIIPLLWRAQEQHDGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M YIR +E+ATFYT F LSPVG    VQ+CGTTPC LRG ++L EVCR  
Sbjct: 59  AIRHVADMLGMEYIRAIEVATFYTMFNLSPVGEHY-VQLCGTTPCWLRGADELKEVCRKH 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +    ++DG  SW EVEC GACVNAPMV I  D +EDL     E ++    +G+   
Sbjct: 118 IGPE-GTVSADGKFSWLEVECLGACVNAPMVQINADFFEDLDAASFERVLADLRSGK--D 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++PGPQ +R +S PAGGLTSL +
Sbjct: 175 VKPGPQNERHASEPAGGLTSLTN 197


>gi|323138149|ref|ZP_08073222.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
 gi|322396611|gb|EFX99139.1| NADH-quinone oxidoreductase, E subunit [Methylocystis sp. ATCC
           49242]
          Length = 202

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 130/202 (64%), Gaps = 7/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MSVRRLAE   QP SF F+ E+  W+ + I++YP  R  SAV+P L +AQ+Q   W+ + 
Sbjct: 1   MSVRRLAE--NQPGSFEFTAENKAWLEKQIAKYPDGRQASAVVPALWQAQKQNNYWLPQK 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M  IRVLE+ATFYT F L PVG    +Q+CGTTPCML G + LI+V   +
Sbjct: 59  AIEKVAETLGMPKIRVLEVATFYTMFNLEPVGKYY-IQLCGTTPCMLCGSDDLIKVLERR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +     +DG  SW EVEC GAC NAPMV I  D YEDLT E  E+++D  + G+   
Sbjct: 118 VGPQR-KVTADGMFSWLEVECLGACCNAPMVQINDDYYEDLTAENFEKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
           ++ G Q  R+SS P GGLTSL 
Sbjct: 175 VKTGSQKGRVSSEPEGGLTSLT 196


>gi|126727147|ref|ZP_01742984.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
 gi|126703575|gb|EBA02671.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2150]
          Length = 379

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL +E  QP+SF+F+  +  W    ++++P  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKE--QPASFAFTPANETWARAQMTKFPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A +LDMAYIR LE+ATFY  FQL+PVG+ AHVQ+CGTT CM+ G E LIEVC+ +I  
Sbjct: 60  HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEALIEVCQQEIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K  + + DG  SWEEVEC GAC NAPMV IGKD YEDLTPE+L EI+   + G+     P
Sbjct: 120 KAHNLSDDGKFSWEEVECLGACSNAPMVQIGKDFYEDLTPEKLREILGELAAGR--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
           GPQ  R ++ P  GLTSL +  S K+ 
Sbjct: 178 GPQNGRYAAEPLSGLTSLKEFESGKKA 204


>gi|84502610|ref|ZP_01000729.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
 gi|84389005|gb|EAQ01803.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
          Length = 460

 Score =  280 bits (718), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 112/205 (54%), Positives = 142/205 (69%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+F+ E+  W    +++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKD--QPESFAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A +LDMAYIR LE+ATFY  FQL+PVG+ AHVQ+CGTT CM+ G E LI VC+  I  
Sbjct: 60  HIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAEDLIAVCQEMIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT ERL EI+   + G+     P
Sbjct: 120 KAHEVSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAERLREILGELAEGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTEYDSGR 202


>gi|258574547|ref|XP_002541455.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237901721|gb|EEP76122.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 264

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 12/212 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R + E      F F+E++   ++E++ RYPP   ++AV+PLL   Q Q GW S + 
Sbjct: 39  LAVHRNSPENNPNIPFKFTEQNLKVIDEIVKRYPPQYKKAAVMPLLDLGQRQLGWTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K++E    
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYFVQICTTTPCQLGGCGSDKIVEAITK 157

Query: 119 KIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---- 173
            +          D   +  EVEC GACVNAPMV I  + YEDLTP+   ++++A      
Sbjct: 158 HLGVHSHGQTTPDKLFTVLEVECLGACVNAPMVQINDEYYEDLTPDTAVQLLEALKESAL 217

Query: 174 TGQG----DTIRPGPQIDRISSAPAGGLTSLL 201
            G+         PGP   R S   + GLT+L 
Sbjct: 218 AGESGKKVKVPAPGPLSGRHSCENSAGLTNLT 249


>gi|328860556|gb|EGG09661.1| hypothetical protein MELLADRAFT_71096 [Melampsora larici-populina
           98AG31]
          Length = 257

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R          F F+ E        I  +PP   ++AVIP+L  AQ Q  GW S +
Sbjct: 42  LFVHRNTSYNNPDLPFEFTPEYMKQAQRCIDNFPPQYKKAAVIPVLDLAQRQNKGWTSIS 101

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +LDM  +RV E+ATFYT F   PVG    VQVC TTPCML   G   +++  +
Sbjct: 102 VMNYVAKLLDMTPMRVYEVATFYTMFNREPVGEHF-VQVCTTTPCMLGGCGSSIIVDTIK 160

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           + +  +     +D   +  EVEC GAC NAPMV I  D YEDLTP+ +++I+D    G+ 
Sbjct: 161 DHLGIQLGQTTADKKFTVIEVECLGACSNAPMVQINDDFYEDLTPDSMKKILDELKAGR- 219

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
               PGPQ  R SS P GGLTSL +    
Sbjct: 220 -KPSPGPQSSRKSSEPVGGLTSLSEKPYG 247


>gi|255723752|ref|XP_002546805.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240134696|gb|EER34250.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 241

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 3/216 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 27  ISVHRDTKEDNPNIPFEFTSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + ++E   N +
Sbjct: 87  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMEAITNHL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ I  D +EDLTPE   +++     G+ +  
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATVKLLQQLQEGK-ELS 204

Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             GP    R S  P  G   LL        K  + D
Sbjct: 205 EVGPVDGKRESCEPFSGQKVLLGKEPNDIRKFTRAD 240


>gi|254439091|ref|ZP_05052585.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
 gi|198254537|gb|EDY78851.1| NADH-quinone oxidoreductase, E subunit subfamily, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/205 (52%), Positives = 145/205 (70%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+ ++  W N  I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A++R LE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60  GVADMLGLAFMRALEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  R+ E+IDA + G+     P
Sbjct: 120 NPHEVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTAARMGELIDALARGE--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLT+L D  + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYEAGK 202


>gi|149914582|ref|ZP_01903112.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
 gi|149811375|gb|EDM71210.1| NADH-quinone oxidoreductase chain E [Roseobacter sp. AzwK-3b]
          Length = 396

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL +E  QP SF+F+ E+  W    I++YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHKE--QPESFAFTPENRAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDM +IR LE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E LI VCR KI  
Sbjct: 60  HVAQMLDMDFIRGLEVATFYFMFQLQPVGSVAHVQVCGTTSCMICGAEDLIGVCREKISP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG LSWEEVEC GAC NAPM  IGKD YEDLT ER  +++D    G+     P
Sbjct: 120 NPHELSADGKLSWEEVECLGACANAPMAQIGKDYYEDLTAERFAQMLDDLVAGK--VPAP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S P  GLTSLL ++  +
Sbjct: 178 GPQNGRYASEPVSGLTSLLAHDKGR 202


>gi|83951743|ref|ZP_00960475.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
 gi|83836749|gb|EAP76046.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           nubinhibens ISM]
          Length = 437

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/205 (54%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+FS  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLYKD--QPESFAFSAANQAWAEGQIAKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQ+ PVG+ AH Q+CGTT CM+ G E L+ VCR K+  
Sbjct: 60  HVADMLGMAYIRALEVASFYFMFQMQPVGSVAHFQICGTTSCMICGAEDLVAVCREKVAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   + DG  SWEEVEC GAC NAPM  IGKD YEDLT ER  EIID  + G+  T  P
Sbjct: 120 NPHELSPDGKFSWEEVECLGACTNAPMAQIGKDYYEDLTAERFAEIIDEMAAGK--TPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEFDSGR 202


>gi|302914918|ref|XP_003051270.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732208|gb|EEU45557.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 260

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 10/221 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  ++      F F+E++   + E++ +YPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LMVHRNTKDNNPELPFKFNEKNQAVIAEILKKYPPQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG +  VQ+C TTPC L   G + +++  +N
Sbjct: 99  MNEVARLLEMPPMRVYEVASFYTMYNRTPVG-KFFVQICTTTPCQLGGCGSDVIVKAIKN 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  K     +DG  +  EVEC GACVNAPM+ I  D YEDLTPE + +++ A       
Sbjct: 158 HLGIKQGETTADGLFTILEVECLGACVNAPMIQINDDYYEDLTPESVVDLLKALKASATA 217

Query: 179 T-------IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
           T        +PGP   R +   + G T+LL         + 
Sbjct: 218 TDPSTVSVPKPGPLSGRSTCENSAGQTNLLAEPWGTETTRS 258


>gi|241950587|ref|XP_002418016.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223641355|emb|CAX43315.1| subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 243

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 3/216 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 29  ISVHRDTKEDNPNIPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++   + +
Sbjct: 89  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDGIMKAITDYL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ I  D +EDLTPE    ++     G+ +  
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLTPEATINLLKQLQEGK-ELT 206

Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             GP    R S  P  G   LL+       K  + D
Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242


>gi|197105263|ref|YP_002130640.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
 gi|196478683|gb|ACG78211.1| NADH dehydrogenase I, E subunit [Phenylobacterium zucineum HLK1]
          Length = 220

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/217 (51%), Positives = 137/217 (63%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRL+    QP SF+FS E+       ++ +PP + QSAV+P+L   Q+QEGWVS  A
Sbjct: 1   MSVRRLSP--VQPESFAFSPETLKKAQAWMANFPPGKQQSAVVPVLWLVQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  VA +L M  IRVLE+ATFYT F L PVGT A VQVCGTTPC  RG E L+EVC+ +I
Sbjct: 59  IRAVAELLGMPVIRVLEVATFYTMFMLEPVGTHALVQVCGTTPCQSRGAEALMEVCKRRI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +  HR++DG   W+EVEC GAC NAPM  I    YEDLTPE  E+++D F+ G+  T 
Sbjct: 119 GPQS-HRSADGKFYWQEVECLGACANAPMAAINDYYYEDLTPESFEKLLDDFAAGK--TP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            PG  I R  SAP GG  +L D      G   K  KI
Sbjct: 176 PPGSAIGRQCSAPEGGPMTLTD-PKLYDGSLAKKIKI 211


>gi|144899469|emb|CAM76333.1| NADH-quinone oxidoreductase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 201

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 117/189 (61%), Gaps = 3/189 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +SF+F+ E+     ++I++YP  R QSAV+PLL  AQ Q GW S A IE +A +L+MA I
Sbjct: 8   TSFAFTPENLETAKKIIAKYPAGRQQSAVMPLLDLAQRQVGWTSIAVIEYIAEMLEMAPI 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+ TFYT +   PVG   HVQVC    C+LRG + + E  +  +  +     +DG  
Sbjct: 68  RVQEVVTFYTMYNQKPVGQ-YHVQVCTNICCLLRGSDGVGETVKELLGVEWGETTADGKF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           +  EVEC GACVNAPM+ I  D YEDLTPE  + +++A   G+  T  PGPQ  R  SAP
Sbjct: 127 TLAEVECLGACVNAPMMQINDDYYEDLTPESTKAVLEALKRGE--TPAPGPQGGRQFSAP 184

Query: 194 AGGLTSLLD 202
            GG T+L D
Sbjct: 185 EGGPTTLGD 193


>gi|302665557|ref|XP_003024388.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
 gi|291188440|gb|EFE43777.1| hypothetical protein TRV_01455 [Trichophyton verrucosum HKI 0517]
          Length = 378

 Score =  279 bits (715), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 15/227 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R          F FS+E+   ++E++ RYPP   ++AV+PLL   Q Q G+ S + +  
Sbjct: 154 HRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKAAVMPLLDLGQRQHGYTSISVMNE 213

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
           VA +L+M  +RV E+ATFYT +   PVG +  VQ+C TTPC L   G +K+++     + 
Sbjct: 214 VARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTTPCQLGGCGSDKIVKAITEHLG 272

Query: 122 Q-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ---- 176
                    DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA         
Sbjct: 273 VSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPESTIQLLDALKASAVAAE 332

Query: 177 ------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                      PGP   R +   + GLTSL +         +KD ++
Sbjct: 333 NGTQPSVKVPPPGPLSGRHTCENSAGLTSLTE-PLWGNETLRKDGEL 378


>gi|163741488|ref|ZP_02148879.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
 gi|161385222|gb|EDQ09600.1| NADH dehydrogenase subunit E [Phaeobacter gallaeciensis 2.10]
          Length = 397

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCQDKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|169600549|ref|XP_001793697.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
 gi|111068724|gb|EAT89844.1| hypothetical protein SNOG_03113 [Phaeosphaeria nodorum SN15]
          Length = 294

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 117/258 (45%), Gaps = 43/258 (16%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   + E++SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LNVHRDTPENNANIPFEFTAQNKELIKEIVSRYPSQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +  +P G + HVQ+C TTPCMLR  + +++ C + +
Sbjct: 99  MNEVARILEMPPMRVYEVATFYTMYNRNPTG-KFHVQICTTTPCMLRDSDAVMKACEDTL 157

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173
                    DG  +  EVEC GAC NAPMV I  D YEDLT E    ++ A         
Sbjct: 158 GIHHGQTTKDGLFTMTEVECLGACANAPMVQINDDYYEDLTYESTVSLLKALRHASEATG 217

Query: 174 ----------------------------------TGQGDTIRPGPQIDRISSAPAGGLTS 199
                                              G      PGP   R S  PAGGLT 
Sbjct: 218 ANLGGADGLNTKGNNASPNSAGEDAINRQGRSIEAGNLKIPSPGPLSGRKSCEPAGGLTC 277

Query: 200 LLDNNSKKRGKKKKDDKI 217
           L           +KD ++
Sbjct: 278 LTGEPWGNET-LRKDGEL 294


>gi|84686433|ref|ZP_01014327.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665616|gb|EAQ12092.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Rhodobacterales bacterium HTCC2654]
          Length = 423

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP+SF+F+ ++  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHHE--QPASFAFTPDNQAWAEAQMTKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  GVADMLGMEYIRALEVATFYFMFQLQPVGSVAHFQICGTTSCMIMGAEDLIAVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT E   ++ID    G G+   P
Sbjct: 120 NPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTESFGDLIDRM--GAGEVPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R +S PAGGLTSL D+ + K
Sbjct: 178 GPQNGRYASEPAGGLTSLKDHEANK 202


>gi|145612669|ref|XP_367376.2| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
 gi|145019806|gb|EDK04034.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
          Length = 257

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 3/208 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FS ++   + EV+ RYPP   ++AV+PLL   Q Q G+ S + 
Sbjct: 43  LMVHRNTPDNNPDIPFKFSAQNEKVITEVLKRYPPQYKKAAVMPLLDIGQRQHGFTSISV 102

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+A+FYT +  +PVG +  VQ C TTPC L   G + +++  + 
Sbjct: 103 MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KYFVQACTTTPCQLGGCGSDAIVKAIKE 161

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           ++         DG  ++ EVEC GACVNAPM+ I  D YEDLTPE  + ++         
Sbjct: 162 ELGISQGQTTPDGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETTKSLLAGLKDPSKA 221

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSK 206
               GP   R S   +GGLT+L      
Sbjct: 222 VPPAGPLSGRHSCEHSGGLTNLTSEPWG 249


>gi|126736065|ref|ZP_01751809.1| ATP synthase subunit E [Roseobacter sp. CCS2]
 gi|126714622|gb|EBA11489.1| ATP synthase subunit E [Roseobacter sp. CCS2]
          Length = 366

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 144/205 (70%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP +F+F+ ++  W    + ++P  R  SA+IP+L RAQEQEGW+SRAAIE
Sbjct: 2   LRRLYHD--QPETFAFTPDNQKWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLSRAAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LD+AYIR LE+A+FY  FQL PVG+ AH+QVCGT  CM+ G E LI VC++KI  
Sbjct: 60  HVAAMLDLAYIRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKITD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EIID  + G+     P
Sbjct: 120 KPHELSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTTERLSEIIDELAAGR--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL D++S K
Sbjct: 178 GPQNGRYAAEPLKGLTSLKDHDSGK 202


>gi|254474816|ref|ZP_05088202.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
 gi|214029059|gb|EEB69894.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e [Ruegeria sp.
           R11]
          Length = 391

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHSE--QPESFAFTPENQTWAEAQITKFPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSVAHVQICGTTSCMICGAEDLIAVCKEKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 KPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDDLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|331251140|ref|XP_003338171.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309317161|gb|EFP93752.1| NADH dehydrogenase flavoprotein 2 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 277

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R          F F+ E        I  +PP   ++AVIP+L  AQ Q  GW S +
Sbjct: 62  LFVHRDTSYNNPQIPFEFTPEYMEKAQRCIDNFPPQYKKAAVIPVLDLAQRQNNGWTSIS 121

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
            +  VA +L+M  +RV E+ATFYT F   PVG    VQ+C TTPCML   G   ++E  +
Sbjct: 122 VMNYVAKLLEMPPMRVYEVATFYTMFNREPVGEHF-VQICTTTPCMLGGCGSGVIVEAIK 180

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           N +  +      D   +  EVEC GAC NAPMV I  D YEDLTPE + +++D  + G+ 
Sbjct: 181 NHLGVELGQTTKDKKFTVIEVECLGACSNAPMVQINDDFYEDLTPESVVKVLDELAAGR- 239

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              +PGPQ  R SS P G LTSL +      G+   ++
Sbjct: 240 -KPKPGPQSSRQSSEPVGKLTSLSE-KPYGPGEHCVEE 275


>gi|90423907|ref|YP_532277.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
 gi|90105921|gb|ABD87958.1| NADH-quinone oxidoreductase, E subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 265

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 148/202 (73%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRRLA +E QP SF+F+EE+  W    I++YPP R  SAVI ++ RA EQ G W++ A
Sbjct: 15  MAVRRLAPKELQPESFAFTEENLAWAQREIAKYPPGRQASAVIAIMWRAHEQLGGWITEA 74

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA++L M +IR LEIATFYT FQL PVG +AHVQVCGTTPC LRG E +I+VC+N+
Sbjct: 75  AIRAVADLLQMPHIRALEIATFYTMFQLQPVGKKAHVQVCGTTPCRLRGAEDIIKVCKNR 134

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH +P H ++DG  SWEEVEC G+CVNAPMVMI KDTYEDLTPE   +++D F++G  + 
Sbjct: 135 IHHEPFHLSADGNFSWEEVECLGSCVNAPMVMITKDTYEDLTPESFGKVLDGFASG--NF 192

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
             PGPQ  R  +AP GG   L 
Sbjct: 193 PTPGPQNGRQFAAPEGGPRVLK 214


>gi|255263626|ref|ZP_05342968.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
 gi|255105961|gb|EET48635.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit
           [Thalassiobium sp. R2A62]
          Length = 366

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHHE--QPDSFAFTPANQKWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+ +LD+A+IR LE+A+FY  FQL PVG+ AH+Q+CGT  CM+ G E LI VC++KI  
Sbjct: 60  HVSTMLDLAFIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLIGVCQDKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP H ++DG  SWEEVEC GAC NAPM  IGKD YEDL  ERL EII+    G+     P
Sbjct: 120 KPHHLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLNTERLVEIIEELDAGK--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL + +S +
Sbjct: 178 GPQNGRFAAEPLSGLTSLTEYDSGR 202


>gi|254453239|ref|ZP_05066676.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
           238]
 gi|198267645|gb|EDY91915.1| NADH-quinone oxidoreductase chain e [Octadecabacter antarcticus
           238]
          Length = 354

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 145/205 (70%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+ ++  W N  I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHLD--QPASFAFTPDNLAWANAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A++R LE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E L+ VC++KI +
Sbjct: 60  SVADMLGLAFMRALEVASFYFMFQLKPVGSVAHIQVCGTTSCMICGAEDLVAVCQDKIAK 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  ++ ++IDA + G+     P
Sbjct: 120 NPHDVSADGKFSWEEVECLGSCSNAPMAQIGKDYYEDLTSAKMADLIDALARGE--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLT+L D  + K
Sbjct: 178 GPQNGRYAAEPLSGLTTLTDYAADK 202


>gi|254509903|ref|ZP_05121970.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
 gi|221533614|gb|EEE36602.1| NADH-quinone oxidoreductase chain e [Rhodobacteraceae bacterium
           KLH11]
          Length = 365

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 141/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTAANQQWAEAQITKYPEGRQASAVIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+A+FY  FQL PVG+ AH+QVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  SVADMLGMAYIRVLEVASFYFMFQLQPVGSVAHIQVCGTTSCMICGAEDLIAVCKEKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG LSWEEVEC G+C NAPM  IGKD YEDLT E   +++D    G+     P
Sbjct: 120 KPHVLSADGKLSWEEVECLGSCTNAPMAQIGKDYYEDLTAESFGKLLDDLVAGR--VPIP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL  ++S +
Sbjct: 178 GPQNGRYAAEPLKGLTSLTAHDSGR 202


>gi|163738801|ref|ZP_02146215.1| ATP synthase subunit E [Phaeobacter gallaeciensis BS107]
 gi|161388129|gb|EDQ12484.1| NADH-quinone oxidoreductase chain 2 [Phaeobacter gallaeciensis
           BS107]
          Length = 397

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ E+  W    I+++P  R  SA+IPLL RAQEQEGW+S+ AIE
Sbjct: 2   LRRLHSE--QPDSFAFTSENQTWAEAQITKFPDGRQASAIIPLLWRAQEQEGWLSKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+A+FY  FQL P G+ AHVQ+CGTT CM+ G E LI VC++KI  
Sbjct: 60  YVADMLGMAYIRALEVASFYFMFQLQPTGSIAHVQICGTTSCMICGAEDLIAVCQDKIAN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  +WEEVEC GAC NAPM  IGKD YEDLT E   +++D  + GQ     P
Sbjct: 120 QPFTLSADGKFTWEEVECLGACTNAPMAQIGKDYYEDLTAEGFAKLLDNLAAGQ--VPLP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R ++ P  GLTSL +  S K
Sbjct: 178 GPQNGRYAAEPKSGLTSLTEYESGK 202


>gi|324507243|gb|ADY43075.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Ascaris suum]
          Length = 280

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 4/192 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   +  +++ YP     +A+IP L  AQ Q GW+  +A+  VA IL++  +RV E+ATF
Sbjct: 90  NLERIKAIMANYPEGHKVAALIPTLDIAQRQHGWLPISAMHEVARILEIPRMRVYEVATF 149

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           YT F   PVG +  +QVC TTPCMLRG E L E    K+  K      DG  +  EVEC 
Sbjct: 150 YTMFNRQPVG-KYLIQVCATTPCMLRGAESLTEAAEKKLGIKVGETTKDGLFTLMEVECL 208

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201
           GAC NAPM+ +  D YEDLTP  + +I+     G+    +PGP+  R+++ P GG TSL 
Sbjct: 209 GACANAPMIQVNDDFYEDLTPSDMNDILSELKAGK--RPKPGPRSGRLAAEPHGGFTSLK 266

Query: 202 DNNSKKRGKKKK 213
            +  +  G   +
Sbjct: 267 -SPPRGPGFGIQ 277


>gi|307192775|gb|EFN75865.1| Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial [Harpegnathos saltator]
          Length = 216

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 83/213 (38%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R +E +     F F+E +   +  +++ YP    + A+IPLL  AQ Q GW+  +A+  
Sbjct: 7   HRDSEHDNPNIPFEFNEANKKRIKALLAIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHK 66

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA ILD+  +RV E+ATFYT F   P+G + HVQ+C  TPC LR  + ++E      + +
Sbjct: 67  VAEILDLPRMRVYEVATFYTMFNRRPMG-KYHVQICTCTPCWLRDSDSIVEAVTKATNCE 125

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
               ++D   +  EVEC GAC NAPM  +  D YEDLTPE    II+AF   +G+    G
Sbjct: 126 IGATSADKLFTISEVECLGACANAPMFQVNDDYYEDLTPESATVIINAFK--KGERPPAG 183

Query: 184 PQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           PQ   R ++ PAGGLTSL        G   + D
Sbjct: 184 PQNSTRFAADPAGGLTSLT-TPPPGPGFGIRSD 215


>gi|217979053|ref|YP_002363200.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
           BL2]
 gi|217504429|gb|ACK51838.1| NADH-quinone oxidoreductase, E subunit [Methylocella silvestris
           BL2]
          Length = 264

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 108/202 (53%), Positives = 137/202 (67%), Gaps = 7/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRRLAE   QP SF+FS E+  WV+ +I++YP  R  SAVI LL RAQ+Q G W+ R 
Sbjct: 1   MTVRRLAE--VQPDSFAFSPENEAWVDAIIAKYPQGRQASAVISLLWRAQKQNGYWLPRP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M YIRVLEIATFY+ F LSPVG    VQ+CGTTPC+L G + +  V +N+
Sbjct: 59  AIEAVAEKLGMPYIRVLEIATFYSMFNLSPVGEHF-VQLCGTTPCLLAGSDGIKSVLKNR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +P    +DG  SW EVEC GAC NAPMV I  D +EDLTP+   +++D  + G+   
Sbjct: 118 IG-EPGVVTADGKFSWNEVECLGACCNAPMVQINDDYFEDLTPDNFAKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
           +  G Q  R+SS PAGGLT+L+
Sbjct: 175 VTAGSQTGRVSSEPAGGLTALV 196


>gi|68472685|ref|XP_719661.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|68472944|ref|XP_719537.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441359|gb|EAL00657.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|46441488|gb|EAL00785.1| potential mitochondrial Complex I, NUHM_24kd subunit [Candida
           albicans SC5314]
 gi|238881854|gb|EEQ45492.1| hypothetical protein CAWG_03820 [Candida albicans WO-1]
          Length = 243

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 3/216 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+    +F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 29  ISVHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 88

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++   + +
Sbjct: 89  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNLQVCTTTPCQLCGSDSIMKAITDYL 147

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             KP     D   + +EVEC GACVNAPM+ I  D +EDL+PE    ++     G+ +  
Sbjct: 148 KIKPGQTTPDKLFTLQEVECLGACVNAPMIAINDDYHEDLSPEATINLLKQLQEGK-ELT 206

Query: 181 RPGPQID-RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             GP    R S  P  G   LL+       K  + D
Sbjct: 207 EIGPVDGKRQSCEPFSGPKVLLNKEPNDIRKFTRAD 242


>gi|156055076|ref|XP_001593462.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980]
 gi|154702674|gb|EDO02413.1| hypothetical protein SS1G_04889 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 292

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 117/248 (47%), Gaps = 41/248 (16%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   E      F F+ ++   V E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LNVHRDTPENNASIPFKFTPQNEKLVEEILKRYPPQYKKAAVMPILDLGQRQHGFTSLSV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +  +PVG + H+QVC TTPC L   G + +++    
Sbjct: 99  MNEVARLLEMPPMRVYEVATFYTMYNRNPVG-KYHLQVCTTTPCQLGGCGSDAIVKTIEQ 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +  KP H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE    ++ A       
Sbjct: 158 HLGIKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQASASD 217

Query: 175 ------GQG----------------------------DTIRPGPQIDRISSAPAGGLTSL 200
                 G+G                                PGP   R +     GLT+L
Sbjct: 218 IAGTEGGKGAITGDDKNVKSGAEVGEDSGKVYNKGGVKVPSPGPMSGRKTCENLNGLTNL 277

Query: 201 LDNNSKKR 208
                 K 
Sbjct: 278 TSEPWSKE 285


>gi|220924009|ref|YP_002499311.1| NADH-quinone oxidoreductase subunit E [Methylobacterium nodulans
           ORS 2060]
 gi|219948616|gb|ACL59008.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 385

 Score =  277 bits (710), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP SF+F+ E+A W  + I++YP  R  SAVIPLL RAQEQ G W+ + 
Sbjct: 1   MANRRLAPTAEQPESFAFTPENAEWARQQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC + G + L  +   +
Sbjct: 61  AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKDLKRMLEER 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H + DGT SW EVEC GAC NAPMV I  D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GHVSPDGTFSWIEVECLGACCNAPMVQINHDYYEDLTPESLSKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
           ++ G QI R SS P G +T+L D    +  + G  +K
Sbjct: 177 VKTGSQIGRTSSEPLGAVTTLTDETLFDGSRIGAWRK 213


>gi|157110248|ref|XP_001651020.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
 gi|108878789|gb|EAT43014.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Aedes aegypti]
          Length = 207

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 3/183 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             VN +++ YP    + A+IPLL  AQ Q GW+  +A+  VA+IL +  +RV E+ATFYT
Sbjct: 19  QRVNAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYT 78

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P GT  HVQVC TTPC LRG ++++  C+ K+         DG  +  EVEC GA
Sbjct: 79  MFMRKPTGT-YHVQVCTTTPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGA 137

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
           CVNAPM+ +  D YEDLT +   EI+     G+    RPGP+  R +S P GGLTSL + 
Sbjct: 138 CVNAPMIAVNDDYYEDLTAKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTEE 195

Query: 204 NSK 206
              
Sbjct: 196 PKG 198


>gi|260426293|ref|ZP_05780272.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
 gi|260420785|gb|EEX14036.1| NADH:ubiquinone oxidoreductase 41 kd complex i subunit [Citreicella
           sp. SE45]
          Length = 388

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 114/205 (55%), Positives = 137/205 (66%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    I++YP  R  SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHPE--QPESFAFTPDNLAWAEGQITKYPEGRQASAVIPLLWRAQEQEGWLTQKAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIRVLE+ATFY  FQL PVG+ AHVQVCGTT CM+ G E LI VC+ KI  
Sbjct: 60  TVADMLGMAYIRVLEVATFYFMFQLQPVGSVAHVQVCGTTTCMICGAEDLIGVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    + DG  SWEEVEC G+C NAPM  IGKD YEDLT ERL EI+D  + G+     P
Sbjct: 120 KAHVVSPDGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAERLGEILDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R  S P GG   L  +   +
Sbjct: 178 GPQNGRYGSEPLGGPVVLTAHVDGR 202


>gi|170088518|ref|XP_001875482.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650682|gb|EDR14923.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 245

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 6/215 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R         +F F  E+     E+IS YPP   ++AVIPLL   Q Q  GW S +
Sbjct: 31  LFVHRDTPYNNPKIAFEFDTENMKRAQEIISFYPPQYKKAAVIPLLDLGQRQNKGWTSIS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +  VAN+L M  +RV E+ATFYT F   P+G    VQVC TTPCMLRG  +++    + 
Sbjct: 91  VMNYVANLLGMPPMRVYEVATFYTMFNREPIGENF-VQVCTTTPCMLRGSPEILNTVCDH 149

Query: 120 IH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +   KP    SDG  +  EVECQGAC NAPM+++G D YEDLTPE  ++I+ AF+ GQ  
Sbjct: 150 LGGIKPGQTTSDGKFTVVEVECQGACSNAPMLVVGDDFYEDLTPETTKKILSAFAKGQ-- 207

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
             + GPQ  R +S  + GLTSL        G+  +
Sbjct: 208 KPKAGPQSGRRTSENSAGLTSLT-TKPYGPGEFCQ 241


>gi|326518664|dbj|BAJ92493.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score =  277 bits (709), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 7/216 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  +       F F+EE    V+ VISRYP    ++AVIP+L   Q Q GW S A 
Sbjct: 37  LFVHRDTDYNNPNIKFEFNEEYRKKVDTVISRYPKQYRKAAVIPVLDLGQRQNGWTSLAV 96

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA +L+M  +RV E+ATFYT +   PVG +  +  CGTTPC+L   G +++ +   +
Sbjct: 97  MNHVAEVLEMPRMRVYEVATFYTMYNREPVG-KHLISYCGTTPCLLGGVGGKRIWDTMTS 155

Query: 119 KI-HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            +   K      DG  +  EVEC GAC NAPM+ I  D YEDLTPE   +I+DA + G+ 
Sbjct: 156 HLGGIKNGETTKDGKFTLVEVECLGACSNAPMIQINDDFYEDLTPESTIKILDALARGE- 214

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
            T +PGPQ  R +S  A G+T+L  +     G+  +
Sbjct: 215 -TPKPGPQSSRKTSENAQGMTTLT-SAPYGPGEHCQ 248


>gi|310793679|gb|EFQ29140.1| respiratory-chain NADH dehydrogenase 24 kDa subunit [Glomerella
           graminicola M1.001]
          Length = 263

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 12/217 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R + +      F FS+E+   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 40  LQVHRDSPKNNADIPFKFSKENEAVIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRN 118
           +  VA +L+M   RV E+A+FYT +  +PVG +  +Q C TTPC L   G + +++   +
Sbjct: 100 MNEVARLLEMPPQRVYEVASFYTMYNRTPVG-KYFIQACTTTPCQLGGVGSDVIVKAIID 158

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +  K      DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA       
Sbjct: 159 HLGIKQGETTKDGLFTLLEVECLGACVNAPMVQINDDYYEDLTPETTVQLLDALKATATA 218

Query: 174 ---TGQGDTIRPGP-QIDRISSAPAGGLTSLLDNNSK 206
                     +PGP    R +   + GLT+L      
Sbjct: 219 TGGAAAAQVPKPGPINSGRQTCENSKGLTNLTSEPWG 255


>gi|320168340|gb|EFW45239.1| NADH dehydrogenase flavoprotein 2 [Capsaspora owczarzaki ATCC
           30864]
          Length = 255

 Score =  277 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 127/223 (56%), Gaps = 13/223 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R A   ++   F F+ E+      +I+ YPP    +A IPLL  AQ Q GW+  +A
Sbjct: 37  LFVHRDAG-VYKDEPFEFTAENLTRAASIIAIYPPKHQAAATIPLLDLAQRQHGWLPLSA 95

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +LDMA IRV E A+FYT F    +G + HVQVC TTPC+L   G +K+++  + 
Sbjct: 96  MNTVAKMLDMAPIRVYETASFYTMFNREKIG-KYHVQVCTTTPCLLGGCGSDKIMKAVQK 154

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +   P    SDG  ++ EVEC GACVNAPM+ I  D YEDLTPE  E+I+D F   +GD
Sbjct: 155 NLGVHPGGTTSDGLFTFTEVECLGACVNAPMIQINDDFYEDLTPETTEQILDGFR--RGD 212

Query: 179 TIRPGPQID------RISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ D      R S  P  GLT+L +  +   G   + D
Sbjct: 213 RPKPGPQKDPATGKLRKSCEPVDGLTTLKEKPTG-PGFGVRAD 254


>gi|85703205|ref|ZP_01034309.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
 gi|85672133|gb|EAQ26990.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Roseovarius
           sp. 217]
          Length = 398

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/206 (55%), Positives = 136/206 (66%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+FS  +  W    IS+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLYHK--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  HVADLLRMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCQEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  R  EIID  + G+     P
Sbjct: 120 KAFELSTDGKFSWEEVECLGACANAPMAQIGKDYYEDLTTARFAEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P  GLTSL +  S + 
Sbjct: 178 GPQNGRYAAEPKSGLTSLKEFESGRA 203


>gi|16126193|ref|NP_420757.1| NADH dehydrogenase subunit E [Caulobacter crescentus CB15]
 gi|221234964|ref|YP_002517400.1| NADH dehydrogenase subunit E [Caulobacter crescentus NA1000]
 gi|13423409|gb|AAK23925.1| NADH dehydrogenase I, E subunit [Caulobacter crescentus CB15]
 gi|220964136|gb|ACL95492.1| NADH-quinone oxidoreductase chain E [Caulobacter crescentus NA1000]
          Length = 228

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/217 (50%), Positives = 138/217 (63%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS++S    +   ++YP  R QSAVIP+L  AQ+QEGW+S  A
Sbjct: 1   MSVRRLAKE--QPASFAFSKDSQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWISEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L+M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L +V  +KI
Sbjct: 59  IQEIAKQLEMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLRKVLEDKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                H ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+    
Sbjct: 119 GP-AHHVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAKILDDFAAGK--AP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +PG    R +S P G + +L D      G   K  KI
Sbjct: 176 KPGSYEGRGASEPKGAIHTLTD-PKLYDGSYAKKIKI 211


>gi|119384978|ref|YP_916034.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
 gi|266652|sp|P29914|NQO2_PARDE RecName: Full=NADH-quinone oxidoreductase chain 2; AltName:
           Full=NADH dehydrogenase I, chain 2; AltName: Full=NDH-1,
           chain 2
 gi|150603|gb|AAA25588.1| NADH dehydrogenase [Paracoccus denitrificans]
 gi|119374745|gb|ABL70338.1| NADH dehydrogenase subunit E [Paracoccus denitrificans PD1222]
          Length = 239

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/204 (53%), Positives = 136/204 (66%), Gaps = 4/204 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL+    QP SF F+  +  W    +++YP  R QSA+IP+L RAQEQEGW+SR AIE
Sbjct: 2   LRRLSP--IQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A++L M YIR LE+ATFY  FQL PVG+ AH+Q+CGTT CM+ G E LI VC+ KI  
Sbjct: 60  YCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E+L  +ID F+ G+     P
Sbjct: 120 EPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGE--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206
           GPQ  R S+   GG T+L D    
Sbjct: 178 GPQNGRFSAEALGGPTALADLKGG 201


>gi|149202667|ref|ZP_01879639.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
 gi|149143949|gb|EDM31983.1| NADH dehydrogenase subunit E [Roseovarius sp. TM1035]
          Length = 396

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP SF+FS  +  W    IS+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLYHQ--QPESFAFSPANQAWAEGQISKYPEGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L M YIR LE+ATFY  FQL PVG+ AH Q+CGTT CM+ G E LI VC++KI  
Sbjct: 60  HVADMLAMDYIRALEVATFYFMFQLQPVGSVAHFQICGTTTCMICGAEDLIAVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC GAC NAPM  IGKD YEDLT  R  EIID  + G+     P
Sbjct: 120 KAFDLSADGKFSWEEVECLGACANAPMAQIGKDYYEDLTAARFAEIIDELAAGK--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P  GLTSL D +S + 
Sbjct: 178 GPQNGRYAAEPKSGLTSLKDFDSGRA 203


>gi|13471403|ref|NP_102969.1| NADH dehydrogenase subunit E [Mesorhizobium loti MAFF303099]
 gi|14022145|dbj|BAB48755.1| NADH-ubiquinone dehydrogenase chain E 1 [Mesorhizobium loti
           MAFF303099]
          Length = 424

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/205 (63%), Positives = 157/205 (76%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPVSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+KI
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID +  G+G ++
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGASV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205
            PGPQ  R  S PA GLT+L    +
Sbjct: 181 APGPQNGRTGSEPASGLTTLKSEKA 205


>gi|319782985|ref|YP_004142461.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168873|gb|ADV12411.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 426

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 130/205 (63%), Positives = 157/205 (76%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLAE   QP+SF+F+  +A    + I +YP  R QSA+IPLLM AQEQEGWV++AA
Sbjct: 1   MSVRRLAEASVQPASFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMIAQEQEGWVTKAA 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           IE ++++L M  IR LE+ATFYTQ+QL+PVGTRAH+QVCGTTPCMLRG E L++VCR+K+
Sbjct: 61  IETISDMLGMPRIRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSEALMDVCRSKV 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           H    H N  GTLSWEEVEC GACVNAPMVMI KDT+EDLTPERL EIID +  G+G  +
Sbjct: 121 HHDQFHTNDKGTLSWEEVECLGACVNAPMVMIFKDTFEDLTPERLAEIIDLYDAGKGAAV 180

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNS 205
            PGPQ  R  S PA GLT+L    +
Sbjct: 181 EPGPQNGRTGSEPASGLTTLKSEKA 205


>gi|89053667|ref|YP_509118.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
 gi|88863216|gb|ABD54093.1| NADH dehydrogenase subunit E [Jannaschia sp. CCS1]
          Length = 395

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/206 (53%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  E  QP SF+F+ ++  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHPE--QPDSFAFTSDNQAWAEAQITKYPEGRAASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L +A+IR LE+ATFY  FQL PVG  AH+Q+CGT  CM+ G E L+ V R KI  
Sbjct: 60  GVADMLGLAHIRALEVATFYFMFQLQPVGAVAHIQICGTLSCMICGAEDLVAVAREKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E    IIDA + G+     P
Sbjct: 120 NPHQISADGKFSWEEVECLGACSNAPMAQIGKDYYEDLTAESFAGIIDAMARGE--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ +R +S PAGGLTSL ++ + + 
Sbjct: 178 GPQTERYASEPAGGLTSLTEHAAGRD 203


>gi|84516735|ref|ZP_01004093.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
 gi|84509203|gb|EAQ05662.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Loktanella
           vestfoldensis SKA53]
          Length = 309

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP++F+F++ +  W    + ++P  R  SA+IP+L RAQEQEGW++R AIE
Sbjct: 2   LRRLYHD--QPATFAFTDANLAWAEAQMKKFPEGRQASAIIPILWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +LDMAY+R LE+A+FY  FQL PVG+ AH+QVCGT  CM+ G E LI VC++KI  
Sbjct: 60  YVAKMLDMAYMRALEVASFYFMFQLQPVGSVAHIQVCGTLSCMICGAEDLIGVCKDKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           K    ++DG  SWEEVEC G+C NAPM  IGKD YEDLT  RL EIID  + G+     P
Sbjct: 120 KAHSLSADGKFSWEEVECLGSCANAPMAQIGKDYYEDLTAARLTEIIDELAAGR--VPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R ++ P GGLT+L D  S K 
Sbjct: 178 GPQNGRFAAEPKGGLTTLKDFTSGKA 203


>gi|316965144|gb|EFV49951.1| NADH dehydrogenase, E subunit [Trichinella spiralis]
          Length = 241

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FSEE+   V  + + YP     +A++P+L  AQ Q GW+  +A
Sbjct: 28  LFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISA 87

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK- 119
           +  VA+++ +  +R+ E+ATFYT +    VG + HVQVC TTPCMLRG +++++  + + 
Sbjct: 88  MNKVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKEC 146

Query: 120 IHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +        + D   +  EVEC GAC NAPM+ I  D YEDLT + +  I      G+  
Sbjct: 147 LGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFSEIRAGK-- 204

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             + GPQ  R+++ P  GLTSL  +     G K +++
Sbjct: 205 KPKMGPQSGRLAAEPISGLTSLT-STPYGPGFKVQEN 240


>gi|149248594|ref|XP_001528684.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448638|gb|EDK43026.1| hypothetical protein LELG_01204 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R  +E+     F F+ E+     E+I++YPP   + A +PLL   Q Q G+ S + 
Sbjct: 27  ISVHRETKEDNTTLPFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLGFTSISV 86

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +LDM  +RV E+ATFYT +   P+G + ++QVC TTPC L G + +++  +  +
Sbjct: 87  MNYVAKLLDMPPMRVYEVATFYTMYNRHPMG-KYNIQVCTTTPCQLCGSDGIMDAIKGYL 145

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG----Q 176
             KP     D   + +EVEC GACVNAPM+ +  D +EDLTPE   +++     G    +
Sbjct: 146 KIKPGQTTPDKLFTLQEVECLGACVNAPMLAVNDDYHEDLTPEATVDLLKKLKEGGDNFE 205

Query: 177 GDTIRPGP-QIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
              I  GP    R S  P  G   LL        K  + D
Sbjct: 206 LSEIGVGPVLNKRESCEPFSGQKVLLSKEPNDMRKFTRAD 245


>gi|325184622|emb|CCA19114.1| NADH dehydrogenase flavoprotein 2 putative [Albugo laibachii Nc14]
          Length = 267

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R   +  + SSF F+ E+   V+ ++ RYP +   SA+IPLL  AQ Q G W+  AA+ 
Sbjct: 35  HRDTRDNTKESSFDFTTENYTKVHAILDRYPENFKASAIIPLLDLAQRQHGGWLPLAAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I+D+  I+V E+ATFYT F    VG +  +Q+CGTTPCM+ G E++       +  
Sbjct: 95  KVARIVDVKPIQVYEVATFYTMFNREKVG-KFFIQLCGTTPCMICGSEEIKHTIEEHLGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
           K      DG  +  EVEC GAC NAPMV I  D YE+LTPE  +E+++A   GQ   + +
Sbjct: 154 KEGETTKDGMFTLREVECLGACANAPMVQINDDFYENLTPETTKELLEACKCGQPPKMSK 213

Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            G  P   ++S     G TSLL +     G + + D
Sbjct: 214 WGSLPLNGQLSCEGPQGKTSLLWDKHPPPGFRMRPD 249


>gi|320582430|gb|EFW96647.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
           [Pichia angusta DL-1]
          Length = 234

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/213 (38%), Positives = 114/213 (53%), Gaps = 4/213 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           +V R  +   Q   F F+ E+     E++ RYPP   +SAV+PLL   Q Q G+ S A +
Sbjct: 25  AVHRDNQHNNQKMKFEFTPENKELAKEIVKRYPPQYKKSAVMPLLDLGQRQAGFTSIAVM 84

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             VA +LDM  +RV E+A+FYT +   PVG + H+Q+C TTPC L   + +IE     ++
Sbjct: 85  NHVAELLDMPAMRVYEVASFYTMYHREPVG-KYHIQICTTTPCQLCNSDSVIEAIMKHLN 143

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +P     DG  S EEVEC GACVNAPM+ I  D YEDLT E   EI++A  +G+   I 
Sbjct: 144 LQPNQTTPDGLFSLEEVECLGACVNAPMMQINDDYYEDLTAESAVEILEALKSGKDVPIG 203

Query: 182 PGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
                 R S  P  G   L++         + D
Sbjct: 204 T---TKRESCEPFSGPKVLVNEPLDVSTLTRSD 233


>gi|322699647|gb|EFY91407.1| NADH-ubiquinone oxidoreductase 24 kDa subunit precursor
           [Metarhizium acridum CQMa 102]
          Length = 259

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 9/214 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + + R   +      F F++E+   + E++ RYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 39  LMIHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  +PVG +  VQ C TTPC L   G + +++  + 
Sbjct: 99  MNEVARLLEMPPMRVYEVASFYTMYNRNPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +  K     +DG  ++ EVEC GACVNAPM+ I  D YEDLTPE + +++ A       
Sbjct: 158 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGD 217

Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
            +      +PGP   R +   + G T+LLD    
Sbjct: 218 ASAAAKVPKPGPLTGRDTCENSKGQTNLLDEPWG 251


>gi|167646793|ref|YP_001684456.1| NADH dehydrogenase subunit E [Caulobacter sp. K31]
 gi|167349223|gb|ABZ71958.1| NADH-quinone oxidoreductase, E subunit [Caulobacter sp. K31]
          Length = 228

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/217 (51%), Positives = 136/217 (62%), Gaps = 6/217 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP+SF+FS ES    +   ++YP  R QSAVIP+L  AQ+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPASFAFSTESQAKADWWKAKYPAERKQSAVIPMLWLAQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I+ +A  L M  IRVLE+ATFY  FQL PVG  A VQ+CGTTPC LRG   L  V + KI
Sbjct: 59  IQEIAKQLQMPVIRVLEVATFYVMFQLQPVGKVAFVQLCGTTPCQLRGALDLKAVLKAKI 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +    ++DG  SWEEVEC GAC NAPM  I    YEDLTPE L +I+D F+ G+  + 
Sbjct: 119 G-QANDVSADGKFSWEEVECLGACCNAPMAAINDYYYEDLTPESLAQILDDFAAGK--SP 175

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +PG    R +S P G + +L D      G   K  KI
Sbjct: 176 KPGSYDGRGASEPKGAIHTLTD-PKLYDGSLAKKIKI 211


>gi|316972042|gb|EFV55744.1| cullin-4B [Trichinella spiralis]
          Length = 1053

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F FSEE+   V  + + YP     +A++P+L  AQ Q GW+  +A
Sbjct: 28  LFVHRDTPDNNADVPFEFSEENMKRVEAIKALYPVGYTSAAILPVLDLAQRQHGWLPISA 87

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK- 119
           +  VA+++ +  +R+ E+ATFYT +    VG + HVQVC TTPCMLRG +++++  + + 
Sbjct: 88  MNKVADVIGVPKMRIYEVATFYTMYNRQKVG-KYHVQVCTTTPCMLRGADQILKHVKKEC 146

Query: 120 IHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +        + D   +  EVEC GAC NAPM+ I  D YEDLT + +  I +    G+  
Sbjct: 147 LGSDAVGENSQDFMFTVSEVECLGACANAPMMQINDDYYEDLTYDDVTRIFNEIRAGK-- 204

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             + GPQ  R+++ P  GLTSL  +     GK     +
Sbjct: 205 KPKMGPQSGRLAAEPISGLTSLT-STPYGPGKFGDSGE 241


>gi|322710266|gb|EFZ01841.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 305

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 9/214 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + + R   +      F F++E+   + E++ RYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 85  LPLHRNTADNNPDIPFKFNKENETVIAEILKRYPEQYKKAAVMPLLDLGQRQHGFTSISV 144

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA +L+M  +RV E+A+FYT +  SPVG +  VQ C TTPC L   G + +++  + 
Sbjct: 145 MNEVARLLEMPPMRVYEVASFYTMYNRSPVG-KFFVQACTTTPCQLGGCGSDVIVKAIKE 203

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS----- 173
            +  K     +DG  ++ EVEC GACVNAPM+ I  D YEDLTPE + +++ A       
Sbjct: 204 HLGIKQGETTADGLFTFIEVECLGACVNAPMIQINDDYYEDLTPETVVDLLKALKASAGE 263

Query: 174 -TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
            +      +PGP   R +   + G T+LLD    
Sbjct: 264 ASAAAKVPKPGPLTGRDTCENSKGQTNLLDEPWG 297


>gi|301101551|ref|XP_002899864.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262102866|gb|EEY60918.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 271

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  E+    + F F+ E+   V+ ++ RYP +   SA+IPLL  AQ Q G W+  AA+ 
Sbjct: 39  HRDTEDNNADTPFDFTPENYDRVHAILDRYPENYKTSAIIPLLDLAQRQHGGWLPLAAMN 98

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I+D   I+V E+ATFYT F    VG +  +Q+CGTTPCM+ G E++ +   N +  
Sbjct: 99  KVARIVDAKPIQVYEVATFYTMFNREKVG-KYFIQLCGTTPCMICGSEEIKKTIENHLGI 157

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
           K      DG  +  EVEC GAC NAPMV I  D YE+LT E   E++DA        + +
Sbjct: 158 KEGETTEDGKFTLREVECLGACSNAPMVQINDDFYENLTAETTRELLDACKNDAPPLMNK 217

Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRG-KKKKDDKI 217
            G  P   ++S     G T+L  +     G + + DD++
Sbjct: 218 WGSLPMNGQLSCEGPQGKTTLKWDKVPGPGFRMRPDDEL 256


>gi|330916684|ref|XP_003297520.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
 gi|311329757|gb|EFQ94380.1| hypothetical protein PTT_07946 [Pyrenophora teres f. teres 0-1]
          Length = 297

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 117/254 (46%), Gaps = 43/254 (16%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   +      F F+ ++   + EV+SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 41  LNVHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + HVQVC TTPCML   + +++ C + +
Sbjct: 101 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTTTPCMLCDSDSVMKACEDVL 159

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173
                    DG  ++ EVEC GAC NAPMV I  D YEDLT E    ++ A         
Sbjct: 160 GVHHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYESTVNLLKALKHAAQATG 219

Query: 174 -----------TGQGDT------------------------IRPGPQIDRISSAPAGGLT 198
                       G+G T                          PGP   R S  PAGGLT
Sbjct: 220 AQPGDKGLASGAGKGTTTGEGAGDAVANAQGRQYEAGGVKVPSPGPLSGRASCEPAGGLT 279

Query: 199 SLLDNNSKKRGKKK 212
            L          +K
Sbjct: 280 CLTSEPWGNETLRK 293


>gi|170742515|ref|YP_001771170.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
 gi|168196789|gb|ACA18736.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium sp. 4-46]
          Length = 394

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/204 (50%), Positives = 131/204 (64%), Gaps = 5/204 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA  E QP++F+F+ E+A W    I++YP  R  SAVIPLL RAQEQ G W+ + 
Sbjct: 1   MANRRLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC + G ++L     ++
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RYWIQVCGTVPCDVCGAKELKHYLHDR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H + DG  SW EVEC GAC NAPMV I +D YEDLTPE L  ++D  + G+   
Sbjct: 120 LGP-AGHVSPDGNFSWLEVECLGACCNAPMVQINQDYYEDLTPEILGRLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
           ++ G Q  R SS P G  T+L D 
Sbjct: 177 VKAGSQAGRTSSEPKGAATTLTDE 200


>gi|298291843|ref|YP_003693782.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
 gi|296928354|gb|ADH89163.1| NADH-quinone oxidoreductase, E subunit [Starkeya novella DSM 506]
          Length = 290

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 146/202 (72%), Gaps = 3/202 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA  E QP +F+F++E+  W  + I++YP  R  SAVIPLLMRAQEQ  GWVS  
Sbjct: 1   MSVRRLAPREVQPENFAFTDENLDWAQKTIAKYPAGRQASAVIPLLMRAQEQAGGWVSEP 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  V ++L MA IRV EIATFYTQFQL+PVG +AH+QVCGTTPCMLRG  +L++VC+++
Sbjct: 61  AMRYVGDMLGMAPIRVYEIATFYTQFQLNPVGKKAHIQVCGTTPCMLRGAGELMDVCKHR 120

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH++  H + +G  SWEEVEC G CVNAPM+ + KD YEDLTP  LE I+DAF  G+   
Sbjct: 121 IHEEQFHLSENGDFSWEEVECAGTCVNAPMIQVWKDVYEDLTPADLERILDAFERGE--K 178

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
              GPQI R SS P  GL  L 
Sbjct: 179 PDAGPQIARHSSEPVTGLRVLT 200


>gi|156398110|ref|XP_001638032.1| predicted protein [Nematostella vectensis]
 gi|156225149|gb|EDO45969.1| predicted protein [Nematostella vectensis]
          Length = 202

 Score =  271 bits (693), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/188 (40%), Positives = 109/188 (57%), Gaps = 4/188 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R  +       F F+E +      +++ YP    ++AVIPLL  AQ Q  GW+  +
Sbjct: 14  LFVHRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPIS 73

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+ L+M  +RV E+ATFYT F   PVG + HVQVC TTPC LR  + L++  ++K
Sbjct: 74  AMNYVADFLNMPRMRVYEVATFYTMFNREPVG-KYHVQVCTTTPCQLRNADDLLDTLKSK 132

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  K    + DG  +   VEC GACVNAPM+ I  + YEDL+ +  EEIID    G+  T
Sbjct: 133 LGIKEGETSKDGMFTLTVVECLGACVNAPMMQINDNYYEDLSMKDAEEIIDDLIAGR--T 190

Query: 180 IRPGPQID 187
            +PGP+  
Sbjct: 191 PKPGPRYS 198


>gi|294677058|ref|YP_003577673.1| NADH-quinone oxidoreductase subunit E [Rhodobacter capsulatus SB
           1003]
 gi|1938238|emb|CAA71230.1| complex I 24kDa subunit [Rhodobacter capsulatus]
 gi|2182078|emb|CAA71011.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit [Rhodobacter
           capsulatus]
 gi|3282563|gb|AAC24989.1| NUOE [Rhodobacter capsulatus]
 gi|294475878|gb|ADE85266.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter capsulatus SB
           1003]
          Length = 389

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 109/208 (52%), Positives = 137/208 (65%), Gaps = 4/208 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    I++YP  R  SAVIPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLH--ATQPDSFAFTPANRAWAEAQITKYPEGRQASAVIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++LDM YIRVLE+A+FY  FQL P G+ AH+QVCGTT CM+ G E LIEVC+ KI  
Sbjct: 60  YVADLLDMPYIRVLEVASFYFMFQLQPTGSVAHIQVCGTTSCMIMGSENLIEVCKRKISH 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P   ++DG  SWEEVEC GAC NAPM  IGKD +EDLT   LE +ID  + G+     P
Sbjct: 120 HPHALSADGKFSWEEVECLGACANAPMAQIGKDYFEDLTEAGLERLIDDLAAGK--APVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRGK 210
           G +I R  + PA GLTS    +  +  +
Sbjct: 178 GSEIGRFGAEPATGLTSCTTTSGAREAQ 205


>gi|254459862|ref|ZP_05073278.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacterales bacterium HTCC2083]
 gi|206676451|gb|EDZ40938.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain e
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 384

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 139/205 (67%), Gaps = 4/205 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL ++  QP SF+F+  +  W    I++YP  R  SA+IPLL RAQEQEGW++R AIE
Sbjct: 2   LRRLHKD--QPDSFAFTLANQAWAEAQITKYPEGRQASAIIPLLWRAQEQEGWLTRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            V+++L +AYIR LE+A+FY  FQL PVG+ AH+Q+CGT  CM+ G E L+ VCR KI  
Sbjct: 60  HVSDMLGLAYIRGLEVASFYFMFQLQPVGSVAHIQICGTLSCMICGAEDLVAVCREKISN 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E L +++D  + G      P
Sbjct: 120 KPHVISADGKFSWEEVECLGACTNAPMAQIGKDYYEDLTTEGLVKLLDDMAAG--SVPTP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKK 207
           GPQ  R S  P  GL+SL D +S K
Sbjct: 178 GPQNGRYSCEPLSGLSSLKDYDSGK 202


>gi|94496478|ref|ZP_01303055.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
 gi|94424224|gb|EAT09248.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. SKA58]
          Length = 226

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/216 (45%), Positives = 132/216 (61%), Gaps = 14/216 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q       +GW+  
Sbjct: 10  EAETRARWGAFAWTAENAAQAEKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             +E +A  LDM Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+N
Sbjct: 70  PVMEYIARQLDMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K   K      DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+  
Sbjct: 129 KGLIK-GSTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGK-- 185

Query: 179 TIRPGPQIDRISSAPAGGLTSL---LDNNSKKRGKK 211
             + GPQIDR +S P GG TSL   +++N   RG+ 
Sbjct: 186 QPKIGPQIDRQTSCPEGGPTSLPEMVEDNHDYRGQW 221


>gi|296813229|ref|XP_002846952.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238842208|gb|EEQ31870.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 263

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 17/229 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R          F FS+E+   ++E++ RYPP   + AV+PLL   Q Q G+ S + 
Sbjct: 40  LHVHRNTPTNNPTIPFKFSQENLTVIDEILKRYPPQYKKGAVMPLLDLGQRQHGYTSISV 99

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT-PCMLRGCEKLIEVCRNK 119
           +  VA +L+M  +RV E+ATFYT +   PVG +  VQ+C T   C   G +K+++     
Sbjct: 100 MNEVARMLEMPPMRVYEVATFYTMYNREPVG-KYFVQICTTLGGC---GSDKIVKAITEH 155

Query: 120 IHQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
           +          DG  +  EVEC GACVNAPMV I  D YEDLTPE   +++DA       
Sbjct: 156 LGVSSHGATTPDGIFTVLEVECLGACVNAPMVQINDDYYEDLTPETTIQLLDALKASAVA 215

Query: 175 ------GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
                        PGP   R +   + GLTSL +         +KD ++
Sbjct: 216 AENGTQSNVKVPPPGPLSGRKTCENSAGLTSLTE-PLWGNETLRKDGEL 263


>gi|296444798|ref|ZP_06886761.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
 gi|296257746|gb|EFH04810.1| NADH-quinone oxidoreductase, E subunit [Methylosinus trichosporium
           OB3b]
          Length = 208

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/216 (50%), Positives = 139/216 (64%), Gaps = 9/216 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS RRLAEE  QPSSF F+ E+  W+   I++YP  R  S V+P L +AQ+Q   W+ + 
Sbjct: 1   MSTRRLAEE--QPSSFEFTPENLAWLETQIAKYPDGRQASVVVPALWQAQKQNDYWLPQK 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M YIRVLEIATFYT F L PVG + +VQ+CGTTPCML G + LI V   +
Sbjct: 59  AIEKVAQTLGMPYIRVLEIATFYTMFNLEPVG-KFYVQLCGTTPCMLSGSDDLIAVLERR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +  H ++DG  SW EVEC GAC NAPMV I  D YEDLT E  E+++D  + G+   
Sbjct: 118 VGPQR-HVSADGLFSWLEVECLGACCNAPMVQINDDYYEDLTAESFEKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           ++ G Q  RISS PAGGLTSL   +    G K + +
Sbjct: 175 VKTGSQTGRISSEPAGGLTSLT--SLYGDGAKAQAE 208


>gi|281200385|gb|EFA74605.1| NADH dehydrogenase [Polysphondylium pallidum PN500]
          Length = 342

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 7/219 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +S     EE    + F F+EE+ + V +++S+YPP+  QSA+IPLL  AQ Q G W+S  
Sbjct: 34  LSRHIETEENNDHTPFDFNEENMVKVEKILSKYPPAYRQSAMIPLLDLAQRQNGGWISLR 93

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA I+ +  +   E+A+FYT F  + +G +  VQVC TTPCMLRG   +++ C++ 
Sbjct: 94  AMDKVAEIIGVPPMEAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTAILDACKHH 152

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         D   +  EVEC GACVNAPM+ I  D YEDLTP+ ++ +++    G+   
Sbjct: 153 LKIGVGETTKDDVFTLAEVECLGACVNAPMICINDDFYEDLTPDSMKNLLNQIQNGKETK 212

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           I  GPQ  R ++    G T+LL+  S   G   +DD +S
Sbjct: 213 I--GPQTHRKAAEGPQGKTTLLEQPS---GPFCRDDLMS 246


>gi|300023449|ref|YP_003756060.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525270|gb|ADJ23739.1| NADH-quinone oxidoreductase, E subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 388

 Score =  269 bits (689), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 151/212 (71%), Gaps = 6/212 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+VRR+  +  QP+ F+FS E+  W  E I++YP  +  SA+IPLL RAQEQ G W+   
Sbjct: 1   MAVRRVNPD--QPAEFAFSAENLAWAQETIAKYPSGKQASAIIPLLWRAQEQSGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  V ++L MA+IR +E+ATFYT FQLSPVGT+AHVQVCGTTPCMLRG   LI VC+++
Sbjct: 59  AIRAVCDLLGMAHIRGMEVATFYTMFQLSPVGTKAHVQVCGTTPCMLRGSRDLISVCQHR 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           IH+ P   NSDGTLSWEEVEC G C NAP+V IGKDTYEDLT E+ E+++D F  G+   
Sbjct: 119 IHEHPHTPNSDGTLSWEEVECIGVCANAPVVQIGKDTYEDLTAEQFEKVLDGFIAGK--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
           ++PG Q  R +S PAGG TSL D  S   G  
Sbjct: 177 LKPGSQTGRTASCPAGGPTSLTDQ-SLYDGST 207


>gi|260574762|ref|ZP_05842765.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
 gi|259023179|gb|EEW26472.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sp. SW2]
          Length = 254

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP+SF+F+  +  W    +S+YP  R  SA+IPLL RAQEQEGW+SR AIE
Sbjct: 2   LRRLHH--TQPASFAFTPANQAWAEGQVSKYPAGRQASAIIPLLWRAQEQEGWLSRPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ A++Q+CGTT C++ G E LI VCR  I  
Sbjct: 60  HVADMLGMAYIRALEVATFYFMFQLQPVGSVANIQICGTTSCLICGAEDLIAVCRELIAD 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           KP   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  ERL  +I  FS G+     P
Sbjct: 120 KPHTLSADGKFSWEEVECLGACTNAPMAQIGKDYYEDLNAERLRALIARFSNGE--VPVP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKR 208
           GPQ  R +S P  GLTSL D+ + + 
Sbjct: 178 GPQNGRYASEPLAGLTSLKDHAAGRA 203


>gi|154304513|ref|XP_001552661.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
 gi|150854112|gb|EDN29304.1| hypothetical protein BC1G_09132 [Botryotinia fuckeliana B05.10]
          Length = 271

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 113/245 (46%), Gaps = 41/245 (16%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R   +      F F+ ++   + E++ +YPP   ++AV+P+L   Q Q G+ S + +  
Sbjct: 21  HRDTPDNNASIPFKFTPQNEKIIEEILKKYPPQYKKAAVMPILDLGQRQHGFTSLSVMNE 80

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRNKIH 121
           VA +L+M  +RV E+ATFYT +  +PVG + HVQ C TTPC L   G + +++     + 
Sbjct: 81  VARLLEMPPMRVYEVATFYTMYNRTPVG-KFHVQACTTTPCQLGGCGSDAIVKAIEGHLG 139

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-------- 173
            KP H   DG  ++ EVEC GACVNAPMV I  D YEDLTPE    ++ A          
Sbjct: 140 IKPGHTTKDGLFTFVEVECLGACVNAPMVQINDDFYEDLTPESTVTLLKALQSSASEIAN 199

Query: 174 --TGQG----------------------------DTIRPGPQIDRISSAPAGGLTSLLDN 203
              G+G                                PGP   R +     GLT+L   
Sbjct: 200 SEAGKGAITGEDANVKSGAEVGEDAGRIYNKGGVKVPSPGPMSGRKTCENIKGLTNLTSE 259

Query: 204 NSKKR 208
              K 
Sbjct: 260 PWSKE 264


>gi|307293266|ref|ZP_07573112.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881332|gb|EFN12548.1| NADH-quinone oxidoreductase, E subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 222

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/217 (43%), Positives = 128/217 (58%), Gaps = 14/217 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q        GW+  
Sbjct: 10  EAETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTNGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+N
Sbjct: 70  PVMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K          DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+  
Sbjct: 129 K-GLVKGGTTPDGLFTLSEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAAGK-- 185

Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKK 212
             + GPQI+R +S P GG T+L +    N   RG   
Sbjct: 186 QPKIGPQIERQTSCPEGGPTTLKEMVSGNHDYRGDWA 222


>gi|294011312|ref|YP_003544772.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
 gi|292674642|dbj|BAI96160.1| NADH dehydrogenase I chain E [Sphingobium japonicum UT26S]
          Length = 222

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/217 (44%), Positives = 130/217 (59%), Gaps = 14/217 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +  +F+++ E+A    +VI+RYP  R QSAV+PLL  AQ Q       +GW+  
Sbjct: 10  EAETRARWGAFAWTAENAEQAKKVIARYPAGRQQSAVMPLLDLAQRQVGAETQTQGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             +E +A+ L+M Y+RV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + +   C+N
Sbjct: 70  PVMEYIADQLEMPYMRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVFSACKN 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K          DG  +  EVEC GAC NAPMV I  D +EDLT + +  I+D  + G+  
Sbjct: 129 K-GLVKGGTTPDGLFTLTEVECLGACANAPMVQINDDNFEDLTYDSMSAILDDLAVGK-- 185

Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKK 212
             R GPQIDR +S P GG T+L +    N   RG+  
Sbjct: 186 QPRIGPQIDRQTSCPEGGPTTLKEMVGENHDYRGEWA 222


>gi|291242347|ref|XP_002741069.1| PREDICTED: mCG9061-like, partial [Saccoglossus kowalevskii]
          Length = 178

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 3/181 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            R   E    + F F+ E+   V ++I  YP     +AVIP+L  AQ Q GW+  +A+  
Sbjct: 1   HRDTPENNPGTPFKFTPENLKRVKDIIGNYPEGHQAAAVIPVLDLAQRQHGWLPISAMHE 60

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA IL+M+ IRV E+ATFYT F   PVG + H+Q+C TTPCMLR  + +++V +NK+   
Sbjct: 61  VAGILEMSKIRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLRDSDGILDVIKNKLGIG 119

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 D   +  EVEC GACVNAPMV I  + YEDLT + +EEIID     +  T + G
Sbjct: 120 VGETTKDNMFTLGEVECLGACVNAPMVQINDNYYEDLTTKDMEEIIDDLKANR--TPKAG 177

Query: 184 P 184
           P
Sbjct: 178 P 178


>gi|164663369|ref|XP_001732806.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
 gi|159106709|gb|EDP45592.1| hypothetical protein MGL_0581 [Malassezia globosa CBS 7966]
          Length = 271

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 121/232 (52%), Gaps = 27/232 (11%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           + V R          FSF  E      ++IS+YPP   ++AVIPLL  AQ+Q   WVS +
Sbjct: 40  LFVHRDTPYNNASIPFSFVGEYEQEAKDIISKYPPQYKKAAVIPLLHLAQKQNDNWVSIS 99

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCR 117
           A+  VA++L+M  +RV E+ATFYT F  SPVG +  VQVC TTPCML   G   ++E   
Sbjct: 100 AMNHVADVLEMPPMRVYEVATFYTMFNRSPVG-KFFVQVCTTTPCMLGGCGSTAVLEAIE 158

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-------------------- 157
           N +  K  H   D   +  EVEC GAC NAPM+ I  + Y                    
Sbjct: 159 NHLGIKAGHTTPDKMFTVIEVECLGACSNAPMIQINDEYYVRIFYNTHTHTHTSGSSNAE 218

Query: 158 -EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
            EDLTPE + +++D  + G+   ++PGPQ  R++SAP     +L +     R
Sbjct: 219 QEDLTPESVVKVLDGLARGEH--VKPGPQNGRLTSAPDNKNRTLTEEVCNHR 268


>gi|163850513|ref|YP_001638556.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           PA1]
 gi|218529210|ref|YP_002420026.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           chloromethanicum CM4]
 gi|163662118|gb|ABY29485.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium extorquens
           PA1]
 gi|218521513|gb|ACK82098.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 412

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L      +
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +        +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
           ++ G QI R+SS P   + +L D    +  + G  +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213


>gi|254560049|ref|YP_003067144.1| NADH-quinone oxidoreductase subunit E [Methylobacterium extorquens
           DM4]
 gi|254267327|emb|CAX23159.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens DM4]
          Length = 412

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L      +
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +        +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
           ++ G QI R+SS P   + +L D    +  + G  +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213


>gi|240137578|ref|YP_002962049.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens AM1]
 gi|240007546|gb|ACS38772.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           [Methylobacterium extorquens AM1]
          Length = 412

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +QVCGT PC   G ++L      +
Sbjct: 61  AIEAVADELGMPHIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDCCGAKELKASLHER 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +        +DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GKVTADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN---NSKKRGKKKK 213
           ++ G QI R+SS P   + +L D    +  + G  +K
Sbjct: 177 VKVGSQIGRVSSEPKDAVNTLTDESLFDGSRVGAWRK 213


>gi|146278040|ref|YP_001168199.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
 gi|145556281|gb|ABP70894.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 303

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 115/204 (56%), Positives = 138/204 (67%), Gaps = 4/204 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    IS+YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHH--AQPDSFAFTSANLEWARGQISKYPEGRQASAIIPLLWRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MA IR LE+ATFY  FQL PVG  AH+Q+CGTT C++ G E+LI VCR KI  
Sbjct: 60  HVADMLGMARIRALEVATFYFMFQLQPVGRVAHIQICGTTSCLICGAEELIRVCREKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS G  D  RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAG--DVPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSK 206
           G QI R SS PAGG TSL +   +
Sbjct: 178 GSQIGRFSSEPAGGATSLTEVGPR 201


>gi|114569909|ref|YP_756589.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
 gi|114340371|gb|ABI65651.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
          Length = 221

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/221 (47%), Positives = 143/221 (64%), Gaps = 12/221 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSVRRLA+E  QP SF+F+++S   +   +++YP ++  SAVIP+L  AQ+QEGWVS  A
Sbjct: 1   MSVRRLAKE--QPESFAFNKKSEAEIKFWLAKYPEAKKASAVIPMLWIAQKQEGWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A  L+M YIRV E+ATFYT F L PVGT   +QVCGTTPCMLRG  +LI+VC+ +I
Sbjct: 59  IRDIAGRLEMPYIRVYEVATFYTMFNLEPVGT-HLIQVCGTTPCMLRGSGELIDVCKKRI 117

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTGQ 176
             K    ++DG  +W EVEC GAC NAPM+ +    G    EDL   +LE ++D  + G+
Sbjct: 118 G-KQHEISADGKFTWIEVECMGACANAPMIQLANPDGDHYVEDLDGAKLEALMDDLAAGK 176

Query: 177 GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
              I+ GPQ +R +S P G  T +L + S   G + K  K+
Sbjct: 177 --QIKYGPQSERNASEPHG--TKVLTDPSLYDGSRAKKIKL 213


>gi|332557947|ref|ZP_08412269.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
 gi|332275659|gb|EGJ20974.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
          Length = 303

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/200 (56%), Positives = 140/200 (70%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDLT E L  +ID FS G+    RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLTAETLAALIDRFSAGE--VPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|154248548|ref|YP_001419506.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
           Py2]
 gi|154162633|gb|ABS69849.1| NADH-quinone oxidoreductase, E subunit [Xanthobacter autotrophicus
           Py2]
          Length = 229

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/203 (52%), Positives = 127/203 (62%), Gaps = 7/203 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRA 59
           MSVRRLA E  QP SF  + E      ++I++YP  R  SAV+PLL   Q+   GW+   
Sbjct: 1   MSVRRLAAE--QPESFDITPELEAIAQKLIAKYPEGRQASAVVPLLWETQKAAGGWLPEP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  VA  L MA IRVLEIATFYT F L PVG +  VQ+CGTTPCMLRG E +  VC  K
Sbjct: 59  AIRAVAERLGMANIRVLEIATFYTMFNLEPVG-KYFVQLCGTTPCMLRGAEAIKHVCEKK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  +  H ++DGT SW EVEC GAC NAPMV I  D YEDLTPE  E+++D  + G+   
Sbjct: 118 IGHER-HVSADGTFSWLEVECLGACTNAPMVQINDDYYEDLTPENFEKLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           ++ GPQ  R  S P GG   L D
Sbjct: 175 VKVGPQNSRRGSEPEGGARVLSD 197


>gi|188580281|ref|YP_001923726.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
           BJ001]
 gi|179343779|gb|ACB79191.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium populi
           BJ001]
          Length = 412

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP  F+F+ E+A W    I++YP  R  SAVIPLL +AQEQ G W+ + 
Sbjct: 1   MANRRLAPAAEQPQDFAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQK 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA+ L M +IRVLE+ATFYT F L PVG R  +Q+CGT PC   G ++L     ++
Sbjct: 61  AIEAVADQLGMPHIRVLEVATFYTMFALEPVG-RFWIQICGTVPCDCCGAKELKAALHDR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H ++DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGPS-GHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLNKLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKKK 213
           ++ G QI RISS P   + +L D    +  + G  +K
Sbjct: 177 VKVGSQIGRISSEPKDAVNTLTDPSLFDGSRVGAWRK 213


>gi|221638930|ref|YP_002525192.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
 gi|221159711|gb|ACM00691.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           KD131]
          Length = 303

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/203 (55%), Positives = 140/203 (68%), Gaps = 4/203 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS G+    RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNS 205
           GPQ  R SS PAGG TSL +  S
Sbjct: 178 GPQAGRFSSEPAGGATSLTEIGS 200


>gi|126461946|ref|YP_001043060.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
 gi|126103610|gb|ABN76288.1| NADH-quinone oxidoreductase, E subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 303

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS G+    RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|182679349|ref|YP_001833495.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635232|gb|ACB96006.1| NADH-quinone oxidoreductase, E subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 222

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 100/202 (49%), Positives = 127/202 (62%), Gaps = 7/202 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS RRLAE   QP SF+F+ ES      ++++YP  R  SAVI LL +AQ+Q   W+ R 
Sbjct: 1   MSNRRLAE--IQPDSFAFTPESEAICKVILAKYPEDRQASAVISLLWQAQKQHDYWLPRP 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA++L M YIRVLE+ATFYT F L PVG    +Q CGTTPC++ G + +  V   +
Sbjct: 59  AIEKVADMLHMPYIRVLEVATFYTMFNLEPVGRYY-IQFCGTTPCLIAGSDDIKAVLEKR 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +     SDG  SW+EVEC GAC NAPMV I  D YEDLTPE    ++D  + G+   
Sbjct: 118 VGPE-GQVTSDGLFSWKEVECLGACCNAPMVQINDDYYEDLTPENFATLLDDLAAGR--P 174

Query: 180 IRPGPQIDRISSAPAGGLTSLL 201
           +R G QI R SS   GGLT+L 
Sbjct: 175 VRIGSQIGRTSSEMHGGLTALT 196


>gi|77463074|ref|YP_352578.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
 gi|77387492|gb|ABA78677.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain E [Rhodobacter
           sphaeroides 2.4.1]
          Length = 303

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 112/200 (56%), Positives = 139/200 (69%), Gaps = 4/200 (2%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL     QP SF+F+  +  W    +++YP  R  SA+IPLL RAQEQEGW+++ AIE
Sbjct: 2   LRRLHH--AQPDSFAFTPANLEWAKGQMTKYPEGRQASAIIPLLFRAQEQEGWLTKPAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA++L MAYIR LE+ATFY  FQL PVG+ AH+Q+CGTT C++ G E+LI VC+ KI  
Sbjct: 60  YVADLLGMAYIRALEVATFYFMFQLQPVGSVAHIQICGTTSCLICGAEELIRVCKEKIAP 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   ++DG  SWEEVEC GAC NAPM  IGKD YEDL  E L  +ID FS G+    RP
Sbjct: 120 QPHMLSADGRFSWEEVECLGACANAPMAQIGKDYYEDLNAETLAALIDRFSAGE--VPRP 177

Query: 183 GPQIDRISSAPAGGLTSLLD 202
           GPQ  R SS PAGG TSL +
Sbjct: 178 GPQAGRFSSEPAGGATSLTE 197


>gi|299117241|emb|CBN75203.1| NUOE homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 278

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 120/216 (55%), Gaps = 6/216 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            +   +  + + F F++E+   V +++++YP +  Q+++IPLL  AQ Q G W+  AA+E
Sbjct: 49  HKDTPDNNETTFFDFTDENYARVEKIMAKYPANYRQASIIPLLDLAQRQHGGWLPLAAME 108

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I+    ++V E+ATFYT F     G +  +Q+CGTTPCM+ G E + +   +++  
Sbjct: 109 KVAKIVGQHEMKVYEVATFYTMFNREKRG-KHFIQLCGTTPCMVCGSEDIKKTIMDELGI 167

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
           K     +DG  +  EVEC GAC NAPMV I  D +E LTPE ++E+++    G+   + R
Sbjct: 168 KNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGR 227

Query: 182 PG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            G  P   ++S     G TSL +      G   + D
Sbjct: 228 WGSLPLNGQVSCEGPHGKTSL-EGTPTGPGFMMRKD 262


>gi|302421686|ref|XP_003008673.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261351819|gb|EEY14247.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 252

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 15/211 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +      F F+ ++   + E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 39  LQVHRNTADNNVEIPFKFTPQNEAVIAELLKRYPPQYKKAAVMPVLDLGQRQHGFTSISV 98

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVCRN 118
           +  VA IL+M  +RV E+A+FYT +  +PVG +  +Q C TTPC L   G + +++    
Sbjct: 99  MNEVARILEMPPMRVYEVASFYTMYNRTPVG-KFFIQACTTTPCQLGGCGSDAIVKTIEE 157

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST---- 174
            +  K     +DG  S+ EVEC GACVNAPMV I  D YEDLTPE   ++IDA       
Sbjct: 158 HLGIKQGETTADGLFSYLEVECLGACVNAPMVQINDDYYEDLTPETTRQLIDALRASVSI 217

Query: 175 --GQ-----GDTIRPGP-QIDRISSAPAGGL 197
             G+         +PGP    R +   + G 
Sbjct: 218 VNGEATVDHAKVPKPGPINSGRQTCENSAGP 248


>gi|170748474|ref|YP_001754734.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654996|gb|ACB24051.1| NADH-quinone oxidoreductase, E subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 457

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/217 (48%), Positives = 134/217 (61%), Gaps = 8/217 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           M+ RRLA    QP SF+FS E+A W    I++YP  R  SAVI LL RAQEQ G W+ RA
Sbjct: 1   MANRRLAPASEQPESFAFSPENAEWAKTQIAKYPEGRQASAVISLLWRAQEQNGGWLPRA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AIE VA  L M  IRVLE+ATFYT F L PVG R  +QVCGT PC   G   L E+ + +
Sbjct: 61  AIEAVAAELGMPNIRVLEVATFYTMFALEPVG-RFWIQVCGTVPCDSCGARGLKEMLQAR 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +     H ++DG  SW EVEC GAC NAPMV I +D YEDLTPE L +++D  + G+   
Sbjct: 120 LGP-AGHVSADGNFSWLEVECLGACCNAPMVQINQDYYEDLTPESLGQLMDDLAAGR--P 176

Query: 180 IRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKKKK 213
           ++ G Q  R+SS P G + +L D    +  + G  +K
Sbjct: 177 VKVGSQTGRVSSEPQGAVNTLTDPTLFDGSRVGAWRK 213


>gi|330814432|ref|XP_003291395.1| NADH dehydrogenase [Dictyostelium purpureum]
 gi|325078420|gb|EGC32072.1| NADH dehydrogenase [Dictyostelium purpureum]
          Length = 244

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +S     E+    + F F++E+     +++++YP    QSA+IPLL  AQ Q G W+S  
Sbjct: 34  LSRHIETEDNNDHTPFDFNQENLKKAEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLK 93

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA+I  +  +   E+A+FYT F  + VG    VQVC TTPCMLRG E++++ CR+ 
Sbjct: 94  AMDKVAHICGIPPMTAYEVASFYTMFNRTKVGQNF-VQVCTTTPCMLRGSEEIVKACRSN 152

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +     +D   +  EVEC GACVNAPM+ +  D YEDLTPE   ++++       +T
Sbjct: 153 LGIEVGETTADNKFTLVEVECLGACVNAPMLCVNDDFYEDLTPESTNKLLNQIK--NNET 210

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
            + GPQ  R ++    G T+LL+  + 
Sbjct: 211 TKIGPQTHRKAAEGPHGKTTLLEPPTG 237


>gi|328870604|gb|EGG18977.1| NADH dehydrogenase [Dictyostelium fasciculatum]
          Length = 249

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 4/207 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +S     ++    + F F+EE+   V+ +IS+YPP   QSA+IPLL  AQ Q G W+S  
Sbjct: 39  LSRHIDTDDNNDHTPFDFTEENMKKVDTIISKYPPKYRQSAMIPLLDLAQRQNGGWISLK 98

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA I+ +A +   E+A+FYT F  + +G +  VQVC TTPCMLRG   ++  C++ 
Sbjct: 99  AMDKVAEIIGVAPMVAYEVASFYTMFNRTKIG-KNFVQVCTTTPCMLRGSTDILNACKHH 157

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           ++        D   +  EVEC GACVNAPM+ I  D YEDLTPE ++ ++      + + 
Sbjct: 158 LNINVGETTKDEKFTLVEVECLGACVNAPMICINDDYYEDLTPETMKNLLTQIE--KSEP 215

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSK 206
            + GPQ  R ++    G T+LL+  + 
Sbjct: 216 TKVGPQNHRKAAEGPQGKTTLLEAPTG 242


>gi|148555893|ref|YP_001263475.1| NADH-quinone oxidoreductase subunit E [Sphingomonas wittichii RW1]
 gi|148501083|gb|ABQ69337.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas wittichii RW1]
          Length = 229

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 14/216 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +   F+++ E+A    ++I+RYPP R QSAV+PLL  AQ Q       +GW+  
Sbjct: 10  EAETRARWGGFAWTPENAAQAEKIIARYPPGRQQSAVMPLLDLAQRQVGAETGTQGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             +E +   L MAYIRV E+ATFYT + L+PVG R HVQVCGTTPCMLRG + ++E C  
Sbjct: 70  PVMEYIGAQLGMAYIRVYEVATFYTMYNLAPVG-RYHVQVCGTTPCMLRGSDDVLEACYK 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K   K     +DG  +  EVEC GAC NAPMV I  D YEDLT + +  ++D  + G   
Sbjct: 129 K-GLKKGATTADGLFTLTEVECLGACANAPMVQINDDNYEDLTFDSMTAVLDTLAAG--G 185

Query: 179 TIRPGPQIDRISSAPAGGLTSLLD---NNSKKRGKK 211
             + GPQ++R +S P GG T+L +    N   RG+ 
Sbjct: 186 QPKIGPQVERQTSCPEGGPTTLQEMVSENHDYRGRW 221


>gi|296416125|ref|XP_002837731.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633614|emb|CAZ81922.1| unnamed protein product [Tuber melanosporum]
          Length = 263

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 121/252 (48%), Gaps = 51/252 (20%)

Query: 1   MSVRR-----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW 55
           MS RR        +      FSF+ ++   ++E++ RYPP   ++AV+PLL   Q Q G+
Sbjct: 1   MSQRRSSSCMNTPQNDPSIPFSFTPQNQQLIDEILKRYPPQYQKAAVMPLLDLGQRQHGF 60

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
            S + +  VA IL+M  +RV E+ATFYT +   PVG + H+QVC TTPCML   + +++ 
Sbjct: 61  ASISVMNEVARILEMPPMRVYEVATFYTMYNRDPVG-KYHLQVCTTTPCMLCDSDSVMQA 119

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST- 174
               +  KP +   DG  ++ EVEC GACVN PMV I  D YEDLT E + ++++A    
Sbjct: 120 VEKFLGVKPGNTTQDGIFTFSEVECLGACVNGPMVQINDDYYEDLTAESVTKLLEALKAT 179

Query: 175 -----------------------GQGDT---------------------IRPGPQIDRIS 190
                                  G+G                         PGP   R++
Sbjct: 180 ADSLPEQAVTWDAPAPTPTPGPKGEGIAGTDAESAIGKLLDKVVNGVRIPAPGPLSGRVT 239

Query: 191 SAPAGGLTSLLD 202
             PA  LTSL +
Sbjct: 240 CEPASKLTSLTE 251


>gi|83592894|ref|YP_426646.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
 gi|83575808|gb|ABC22359.1| NADH dehydrogenase (ubiquinone) [Rhodospirillum rubrum ATCC 11170]
          Length = 208

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 3/190 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP++F+F+ E+      ++++YP  R +S V+PLL  AQ Q+GWVS AAIE V  +    
Sbjct: 10  QPATFAFTPENLEKAQAILAKYPKGRERSGVLPLLDLAQRQQGWVSHAAIEEVGRLTGTP 69

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            +RVLE+ATFYT ++LSP G R H++VC   PC LRG ++++   R+++  +      DG
Sbjct: 70  RMRVLEVATFYTMYKLSPKG-RHHIEVCTNLPCWLRGSDEILRAVRDELGIEVGGETDDG 128

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
             S  E EC GACVNAPM+ IG D YEDLT E + E++     G+   + PG Q  R  +
Sbjct: 129 LFSLAEAECLGACVNAPMLQIGDDYYEDLTYESVRELVRKLKVGE--PVTPGSQSGRQGA 186

Query: 192 APAGGLTSLL 201
            P GG T+L 
Sbjct: 187 CPEGGPTTLK 196


>gi|149184633|ref|ZP_01862951.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
 gi|148831953|gb|EDL50386.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter sp. SD-21]
          Length = 223

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/227 (44%), Positives = 133/227 (58%), Gaps = 19/227 (8%)

Query: 1   MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52
           M+ R  A +  +      +F F+E      ++ I+RYP  R +SAV+PLL  AQ Q    
Sbjct: 1   MADRNPAPDTPELRERWGAFEFTESYRAKADKAIARYPEGRQRSAVMPLLDLAQRQVGEE 60

Query: 53  ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
              +GW+    IE VA+ LDM  IRVLE+A+FY  + + PVG + HVQVCGTTPCMLRG 
Sbjct: 61  TDTQGWLPLPVIEYVADYLDMPVIRVLEVASFYFMYNMVPVG-KYHVQVCGTTPCMLRGS 119

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + L E C+ +   K  H + DG  +  EVEC G C  APMV I  D YEDLTPERL+EI+
Sbjct: 120 DGLFETCKKR-GMKKGHVSDDGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDEIL 178

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKKK 212
           D  + G+    + G Q   R +S PAGG T+L   +D N   RG+ K
Sbjct: 179 DELAAGK--QPKSGTQEPGRHTSEPAGGPTTLKEMVDANHDYRGEWK 223


>gi|313232017|emb|CBY09129.1| unnamed protein product [Oikopleura dioica]
          Length = 238

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 124/221 (56%), Gaps = 10/221 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSA-VIPLLMRAQEQEG-WVSR 58
           + V R  +E      F ++EE+ + +  + ++YP     +A ++P+L  AQ Q G W+  
Sbjct: 21  IFVHRDTKESNTEIPFEWTEENLVRIQAIKNQYPYGHENNASIMPVLDLAQRQYGGWLPL 80

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCML--RGCEKLIEVC 116
           + ++ VA  LD+  IRV E+ATFYT ++  PVG + H+Q+CGTTPCM+   G +K+ E  
Sbjct: 81  SVMDAVAATLDVPPIRVYEVATFYTMYKRVPVG-KYHIQLCGTTPCMIGGCGAKKIKEAI 139

Query: 117 RNKIHQKPL--HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             ++          SD   S+EEVEC GACVNAPMV I  D YEDLT + ++ I+     
Sbjct: 140 LEEVGIGHHNDELTSDKMFSYEEVECLGACVNAPMVQINDDYYEDLTEQDMKTILRDLR- 198

Query: 175 GQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            +    R GP+  R+SS P GG TSL +      G   +DD
Sbjct: 199 -KDGFSRKGPRNGRVSSEPLGGATSLTE-PPTGPGFGVRDD 237


>gi|83858410|ref|ZP_00951932.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
 gi|83853233|gb|EAP91085.1| ATP synthase subunit E [Oceanicaulis alexandrii HTCC2633]
          Length = 346

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 10/222 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS RR+A E  QP SF+F+E+S   V   +++YP  R  SAVIPLL  AQ+Q+ WVS  A
Sbjct: 1   MSARRIAAE--QPESFAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDNWVSEPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A    M YIRV E+ATFYT F L   G +  +QVCGTTPC LRG + L  VC  KI
Sbjct: 59  MREIAARCGMPYIRVYEVATFYTMFNLEQTG-KHLIQVCGTTPCWLRGADDLKAVCEKKI 117

Query: 121 HQKP-LHRNSDGTLSWEEVECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFSTG 175
            +K   H +SDG L+WEEVEC GAC NAPMV I    G   YEDLT E LE+++D    G
Sbjct: 118 GKKGREHVSSDGMLAWEEVECLGACANAPMVQISNTEGDLYYEDLTAEALEQMLDDLRAG 177

Query: 176 QGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +   ++ GP   R  S P       L + S   G + K  K+
Sbjct: 178 K--EVKAGPISGRSCSEPTQATVKTLVDESLYDGSRAKKIKL 217


>gi|224005697|ref|XP_002291809.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220972328|gb|EED90660.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 261

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
           S      +    + F F+EE+   VN+++S+YP +  QS +IPLL  AQ Q G W+  AA
Sbjct: 31  SFHINTPDNTPETYFDFTEENYHRVNKILSKYPANYKQSGIIPLLDLAQRQHGGWLPVAA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           ++ VA I+  A  RV E+A+FYT F  + VG +  +Q+CGTTPCM+ G E + +     +
Sbjct: 91  MDKVAQIVGAAPSRVYEVASFYTMFNRTKVG-KYFIQLCGTTPCMICGSEDIKKTIEKHL 149

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      DG  +  EVEC GAC NAPM+ +  D YE L  + + E+++A   G+   +
Sbjct: 150 GIKNGETTKDGMFTLLEVECLGACANAPMIQLNDDYYECLNAKSIVELLEACKAGKPPAM 209

Query: 181 -RPG--PQIDRISSAPAGGLTSLLDNNSKK 207
            + G  P   ++S     G TSL +  + K
Sbjct: 210 GKWGSLPMNGQVSCEGPLGKTSLFEVEAPK 239


>gi|66803074|ref|XP_635380.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
 gi|74851521|sp|Q54F10|NDUV2_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial; Flags: Precursor
 gi|60463688|gb|EAL61870.1| NADH dehydrogenase [Dictyostelium discoideum AX4]
          Length = 247

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +S     E+  + + F F++E+ + V +++++YP    QSA+IPLL  AQ Q G W+S  
Sbjct: 37  LSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLR 96

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA+I  +A +   E+A+FYT F  + +G    VQVC TTPCMLRG  ++I+ C++ 
Sbjct: 97  AMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENF-VQVCTTTPCMLRGSGEIIKTCKSH 155

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  +      D   +  EVEC GACVNAPM+ I  D YEDLT      ++D     +   
Sbjct: 156 LGIQVGETTPDNKFTLVEVECLGACVNAPMMCINDDFYEDLTSASTINLLDQIKNNK--P 213

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            + GPQ  R ++    G T+LL+      G   +DD
Sbjct: 214 TKIGPQTHRKAAEGPQGKTTLLEPPV---GPTCRDD 246


>gi|300121826|emb|CBK22400.2| subunit NuoE (NDUFV2) [Blastocystis hominis]
          Length = 267

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 11/217 (5%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
              + +    + F F+ E+   V+E++ RYP +  QSAV+PLL  AQ Q G ++  AA+ 
Sbjct: 35  HYDSPDNNVDTPFDFTAENYRRVHEIMKRYPKNYKQSAVMPLLDLAQRQCGNYLPLAAMN 94

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA IL+M  ++V E+ TFYT ++   VG +  +Q CGTTPCML G E++ +    ++  
Sbjct: 95  KVAEILEMPPVKVYEVVTFYTMYRTEKVG-KFFIQACGTTPCMLCGSEEIFQTLEKELGI 153

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-- 180
           K      DG  S  +VEC GAC NAPMV I  D YE LTP+   E+++ +   +G     
Sbjct: 154 KDGETTKDGMFSLLKVECLGACANAPMVQINDDYYECLTPKTTVELLN-YIRKEGKLPPL 212

Query: 181 -RPG--PQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
            + G  P   + S     G T+L       RGK  ++
Sbjct: 213 NKSGSKPMNGQESCEGINGQTTLKGE---IRGKYCRE 246


>gi|209545445|ref|YP_002277674.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533122|gb|ACI53059.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 216

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS     ++  QPSSF+F  ES   +  ++ +YPP R  S  +PLL  AQ+Q G      
Sbjct: 1   MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ +A  L++A IRV E+ATFY  F   P+G R H+QVC TT C LRG + ++ 
Sbjct: 61  WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 119

Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+           ++DG  +  EVEC G C NAP++ +  D YEDL   R  E+I+A  
Sbjct: 120 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
             +GD  +PGP IDR+ +APAGG  +L D+ +  R  +
Sbjct: 180 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 215


>gi|254294099|ref|YP_003060122.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
           49814]
 gi|254042630|gb|ACT59425.1| NADH-quinone oxidoreductase, E subunit [Hirschia baltica ATCC
           49814]
          Length = 366

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 105/213 (49%), Positives = 137/213 (64%), Gaps = 7/213 (3%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA 60
           S+RR   E     SF+F  E+   +   +S+YP  R +SAVIP+L  AQ + +GW+S  A
Sbjct: 3   SIRRFDIEAG-GESFAFKAETEEKIAFWLSKYPEERKRSAVIPMLWMAQKDNKGWLSEPA 61

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L MAYIRV E+ATFYT F++ PVG   H+QVCGTTPCMLRG + L++VC++KI
Sbjct: 62  MREVADRLGMAYIRVYEVATFYTMFRMQPVGE-FHIQVCGTTPCMLRGSDDLMKVCKSKI 120

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            +K  H  ++G LSWEEVEC GACVNAPM  I    YEDL    +  ++D F  G+    
Sbjct: 121 GEK-GHVGANGKLSWEEVECLGACVNAPMAQINDYYYEDLDEASMTSLLDDFVAGKN--P 177

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
            PG + DR +SAP GGLTSLLD  +   G   K
Sbjct: 178 APGTRADRKNSAPEGGLTSLLDE-TLYDGSMAK 209


>gi|258542718|ref|YP_003188151.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633796|dbj|BAH99771.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636855|dbj|BAI02824.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639908|dbj|BAI05870.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642964|dbj|BAI08919.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646019|dbj|BAI11967.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649072|dbj|BAI15013.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652059|dbj|BAI17993.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655116|dbj|BAI21043.1| NADH-quinone oxidoreductase chain E [Acetobacter pasteurianus IFO
           3283-12]
          Length = 213

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 10/207 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
           QP SF+F +ES   +  V+ +YP  R  SAV+PLL  AQ Q G      W+   A++ +A
Sbjct: 10  QPESFAFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-P 124
           + L+MA IRV E+A+FYT F   P+G R H+QVC TTPC LRG + + E CR        
Sbjct: 70  HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              ++DG  +  EVEC GAC NAP++ +  D YED+   R E +I     G+      GP
Sbjct: 129 GETSADGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGR--KPEAGP 186

Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211
            I+R+ SAP GG  +LL+ ++    +K
Sbjct: 187 TINRMCSAPEGGRKTLLETSASSPDQK 213


>gi|330994058|ref|ZP_08317988.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329759004|gb|EGG75518.1| NADH dehydrogenase [ubiquinone] flavoprotein 2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 216

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/215 (42%), Positives = 126/215 (58%), Gaps = 10/215 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS +  A E  +P+ F F ++S   +  V+++YPP R  S V+PLL   Q+Q G      
Sbjct: 1   MSAQPSAPEGAEPTHFEFDQDSERQIAAVLAKYPPERKASGVLPLLYVVQKQMGRQTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           W+ R A++VVA  L+MA IRV E+ATFY  F   P+G R H+QVC TT C LRG + +  
Sbjct: 61  WIPRVAMDVVAERLEMAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVTA 119

Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+     K     ++DG  +  EVEC GAC NAP++ +  D YEDL   R EE+I A  
Sbjct: 120 ACKAATGIKAFGETSADGLFTLTEVECLGACANAPILQVDDDYYEDLDGPRTEELIAALK 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
            G+     PGP IDR++SAPAGG   L+ + ++K 
Sbjct: 180 RGE--RPTPGPTIDRLNSAPAGGRKVLVGDMAQKP 212


>gi|114327962|ref|YP_745119.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316136|gb|ABI62196.1| NADH-quinone oxidoreductase chain E [Granulibacter bethesdensis
           CGDNIH1]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 10/206 (4%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAA 60
             E +QP+ FSF  +S   +  ++++YPP+R  SAV+PLL  AQ Q G      W+ RAA
Sbjct: 11  GREPWQPAEFSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAA 70

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           ++ +A  L MA IRV E+ATFY  +   PVG R H+Q+C TTPC LRG ++++  CR+  
Sbjct: 71  MDEIARRLGMAPIRVYEVATFYFMYNTRPVG-RHHLQLCTTTPCWLRGSDEVVAACRSAT 129

Query: 121 HQ-KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
                   + DG  +  EVEC GACVNAP++ +  D YED+   R   +++A   G+   
Sbjct: 130 GIQGWGETSEDGMFTMTEVECLGACVNAPILQVDDDYYEDMDGPRTLVLLEALRRGE--R 187

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205
             PG    R +SAP GG T+L D  S
Sbjct: 188 PTPGSMSGRQNSAPEGGPTTLRDVPS 213


>gi|296116531|ref|ZP_06835141.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976743|gb|EFG83511.1| NADH-quinone oxidoreductase, E subunit [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 219

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 11/222 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS +     + +P++F+F  ES   + +++++YPP R  S VIPLL   Q+Q G      
Sbjct: 1   MSAQSNIPHDAEPAAFAFDAESERQIAQILAKYPPERKASGVIPLLYVVQKQMGRLTGSA 60

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ VA+ L+MA IRV E+ATFY  F   P+G + H+QVC TT C LRG + +  
Sbjct: 61  WVPRVAMDAVAHRLEMAPIRVYEVATFYLMFNTKPIG-KYHLQVCTTTSCWLRGSDDVTA 119

Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+           ++DG  +  EVEC GAC NAP++ +  D YED+   R  E+I A  
Sbjct: 120 ACKAATGIDAFGGTSADGMFTMTEVECLGACANAPILQVDDDYYEDMDGPRTTELIAALR 179

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            G+    + GP IDR+ SAP GG  +LLD+ +  +G   +D+
Sbjct: 180 RGE--RPKAGPTIDRMDSAPVGGRKTLLDSAAG-QGTGTQDN 218


>gi|162148807|ref|YP_001603268.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787384|emb|CAP56979.1| NADH-quinone oxidoreductase chain E [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 219

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 10/218 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS     ++  QPSSF+F  ES   +  ++ +YPP R  S  +PLL  AQ+Q G      
Sbjct: 4   MSAHSPIDQIEQPSSFAFDAESEAEIATILVKYPPERKASGTLPLLYVAQKQMGRVTGSA 63

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ +A  L++A IRV E+ATFY  F   P+G R H+QVC TT C LRG + ++ 
Sbjct: 64  WVPRVAMDEIARRLEVAPIRVYEVATFYLMFNTKPIG-RYHLQVCTTTSCWLRGSDDVVA 122

Query: 115 VCRNKIHQK-PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+           ++DG  +  EVEC G C NAP++ +  D YEDL   R  E+I+A  
Sbjct: 123 ACKKATGISAFGQSSADGLFTLTEVECLGGCSNAPILQVDDDFYEDLDGPRTIELIEALR 182

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
             +GD  +PGP IDR+ +APAGG  +L D+ +  R  +
Sbjct: 183 --RGDRPKPGPTIDRMGAAPAGGRKTLTDSPADSRSDQ 218


>gi|219126692|ref|XP_002183585.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404822|gb|EEC44767.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 260

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 5/203 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
                E      F F+ E+   V  ++++YP +  Q+A+IPLL  AQ Q G W+   A+ 
Sbjct: 32  HIDTPENNLEVHFDFTLENYDRVKYIMAKYPNNYKQAAMIPLLDLAQRQHGGWLPLTAMH 91

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I ++A +RV E+A+FYT F  +PVG +  +Q+CGTTPCM+ G E + +     +  
Sbjct: 92  KVAAICEVAPVRVYEVASFYTMFNRNPVG-KYFIQLCGTTPCMICGSEDIKQTIEKHLGI 150

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI-R 181
           K      DG  +  EVEC GAC NAPMV +  D YE LTP+    ++++   G    + +
Sbjct: 151 KNGETTKDGLFTLLEVECLGACANAPMVQLNDDYYECLTPDTTIALLESCKAGNPPAMGK 210

Query: 182 PG--PQIDRISSAPAGGLTSLLD 202
            G  P   ++S     G TSL +
Sbjct: 211 WGSLPMNGQVSCEGPKGKTSLKE 233


>gi|85374160|ref|YP_458222.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
 gi|84787243|gb|ABC63425.1| NADH:ubiquinone oxidoreductase 41 kD complex I subunit
           [Erythrobacter litoralis HTCC2594]
          Length = 222

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 19/226 (8%)

Query: 1   MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52
           M+ R LA +  +      +F F+  +    ++ I++YP  R +SAV+PLL  AQ Q    
Sbjct: 1   MADRSLAADTPELRERWGNFVFTAANKAEADKHIAKYPEGRQRSAVMPLLFLAQAQVGEE 60

Query: 53  ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
              +GW+    +E VA+ LDM  IRV+E+ATFY  + L PVG + HVQVCGTTPCMLRG 
Sbjct: 61  TNTQGWLPLPVMEYVADYLDMPVIRVVEVATFYFMYNLQPVG-KYHVQVCGTTPCMLRGS 119

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           +++I  C+ +   +    ++DG  +  EVEC G C  APMV I  D YEDLTPERL+ ++
Sbjct: 120 DEIIAACKKR-GMEKGRVSADGLWTLTEVECMGNCATAPMVQINDDNYEDLTPERLDAVL 178

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKK 211
           DA + G+    + G Q   R +S P GG T+L   +D N   R + 
Sbjct: 179 DALAAGE--QPKTGTQEPGRHTSEPLGGPTTLKEMVDANHDYRSEW 222


>gi|55233146|gb|AAV48531.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 2 [Aedes
           aegypti]
          Length = 180

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IPLL  AQ Q GW+  +A+  VA+IL +  +RV E+ATFYT F   P GT  HVQVC T
Sbjct: 1   MIPLLDLAQRQHGWLPISAMHRVADILGLPNMRVYEVATFYTMFMRKPTGT-YHVQVCTT 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           TPC LRG ++++  C+ K+         DG  +  EVEC GACVNAPM+ +  D YEDLT
Sbjct: 60  TPCWLRGSDEIMTACKEKLGIGAGETTKDGKFTISEVECLGACVNAPMIAVNDDYYEDLT 119

Query: 162 PERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
            +   EI+     G+    RPGP+  R +S P GGLTSL +    
Sbjct: 120 AKDTIEILSDLKQGK--VPRPGPRNGRFASEPTGGLTSLTEEPKG 162


>gi|114797708|ref|YP_760452.1| NADH-quinone oxidoreductase subunit E [Hyphomonas neptunium ATCC
           15444]
 gi|114737882|gb|ABI76007.1| NADH-quinone oxidoreductase, E subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 257

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/203 (50%), Positives = 132/203 (65%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRA 59
           M++RR   E     SFSF  E+   +    ++YP  + +SAVIP+L  AQ +  GW+S  
Sbjct: 1   MALRRFDLEAG-GDSFSFKSETEEKITFWRAKYPADKQRSAVIPMLWLAQKDNNGWLSEP 59

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA+ L+M Y+RV E+ATFYT F+L PVG + HVQ+CGTTPC LRG E L EVC  +
Sbjct: 60  AMREVADRLEMPYMRVYEVATFYTMFRLQPVG-KFHVQLCGTTPCQLRGAENLKEVCTRE 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I  K ++   D  LSWEEVEC GACVNAPMV I  D YEDLTP+ L +II     G    
Sbjct: 119 IG-KQMYVTDDKRLSWEEVECLGACVNAPMVQINDDYYEDLTPDSLAQIIGRLKNG--VE 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
           + PGPQIDR++SAP GG  +L +
Sbjct: 176 VTPGPQIDRVNSAPEGGNATLTE 198


>gi|329114682|ref|ZP_08243441.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
 gi|326696162|gb|EGE47844.1| NADH-quinone oxidoreductase subunit E [Acetobacter pomorum DM001]
          Length = 213

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 10/207 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------WVSRAAIEVVA 65
           QP SF F +ES   +  V+ +YP  R  SAV+PLL  AQ Q G      W+   A++ +A
Sbjct: 10  QPDSFVFDDESEAEIVNVLKKYPEERKASAVMPLLYIAQRQMGRVTGSAWIPLVAMDDIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-P 124
           + L+MA IRV E+A+FYT F   P+G R H+QVC TTPC LRG + + E CR        
Sbjct: 70  HRLEMAPIRVYEVASFYTMFNTKPIG-RYHLQVCTTTPCWLRGSDAVTEACRKATGIHHF 128

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              + DG  +  EVEC GAC NAP++ +  D YED+   R E +I     G+      GP
Sbjct: 129 GETSDDGLFTLTEVECLGACANAPILQVDDDYYEDMDGPRTEALIADLRAGRH--PEAGP 186

Query: 185 QIDRISSAPAGGLTSLLDNNSKKRGKK 211
            I+R+ SAP GG  +LL+ ++    +K
Sbjct: 187 AINRMCSAPEGGRKTLLETSASSSDQK 213


>gi|326387457|ref|ZP_08209066.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208113|gb|EGD58921.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 222

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 23/228 (10%)

Query: 1   MSVRRLAEEEFQPS------SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-- 52
           M+ R    E   P       SF+++ E+A    E+++RYP  R +SAV+PLL  AQ Q  
Sbjct: 1   MADR--HPEPVTPELVARWGSFAWTAENAEKAKEIVARYPAGRQRSAVMPLLDLAQRQVG 58

Query: 53  -----EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
                +GW+    +E VA  LDM  IRVLE+ATFYT + + PVG R HVQVCGTTPCMLR
Sbjct: 59  AEENTQGWLPMPVMEYVARYLDMPIIRVLEVATFYTMYNIQPVG-RFHVQVCGTTPCMLR 117

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
           G + ++  C  +   K  H   DG  +  EVEC G C +APMV I  D YEDLT +RL  
Sbjct: 118 GSDDILSACYAR-GLKKGHTTKDGLFTLTEVECMGNCSSAPMVQINDDNYEDLTADRLNF 176

Query: 168 IIDAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLL---DNNSKKRGKK 211
           ++D  + G+    + G Q   R +  P GG TSL      N   RG+ 
Sbjct: 177 VLDELAAGR--QPKAGTQEPGRHTVEPVGGPTSLTAMVTENHDYRGEW 222


>gi|302758780|ref|XP_002962813.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
 gi|300169674|gb|EFJ36276.1| hypothetical protein SELMODRAFT_165405 [Selaginella moellendorffii]
          Length = 254

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +++   +++  + + F F++ +     E++S YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 31  LNLHINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A I+ +  IRV E+ATFY+ F  + VG + H+QVCGTTPCM+RG   +       
Sbjct: 91  AMNKIAEIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKH 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPMV++            + YEDLTP+R+ EI+
Sbjct: 150 LGVKRNEVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIV 209

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           +     +G+    G Q   RI   PAGG T+LL +     
Sbjct: 210 EMLR--KGEKPPVGTQNPTRIKCGPAGGNTTLLSDPKPPP 247


>gi|255644244|gb|ACU22686.1| unknown [Glycine max]
          Length = 251

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++      +      + F+E +   V E++S YP +  QSA IPLL  AQ+Q G W+  +
Sbjct: 28  LNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVS 87

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA I+++  IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + E     
Sbjct: 88  AMDAVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKH 146

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI+
Sbjct: 147 LGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 206

Query: 170 DAFSTGQGDTIRPGPQIDRI-SSAPAGGLTSLLDNNSKKR 208
           +     +G+    G Q  R   S P GG T+LL       
Sbjct: 207 EKLR--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244


>gi|85708750|ref|ZP_01039816.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
 gi|85690284|gb|EAQ30287.1| NADH Dehydrogenase I Chain E [Erythrobacter sp. NAP1]
          Length = 222

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 127/226 (56%), Gaps = 19/226 (8%)

Query: 1   MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52
           M+ R  A +  +      SF +S+E+    +  I++YP  R +SAV+ LL   Q Q    
Sbjct: 1   MADRTPAPDTPELRARWGSFEWSKENKKKADREIAKYPEGRQKSAVMALLDLGQRQVGEE 60

Query: 53  ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
              +GW+    IE +A+ LDM  IRVLE+ATFY  + + PVG + HVQVCGTTPCMLRG 
Sbjct: 61  TDTQGWLPLPVIEYIADYLDMPVIRVLEVATFYFMYNMKPVG-KYHVQVCGTTPCMLRGS 119

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + +I  C+ +        + DG  +  EVEC G C  APMV I  D YEDLT ERL+ ++
Sbjct: 120 DDIISACKKR-GMGFGKVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVL 178

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSL---LDNNSKKRGKK 211
           DA + G+    + G Q   R +S P+GG T+L   +D N   RG  
Sbjct: 179 DALAAGE--QPKTGTQEPGRHTSEPSGGPTTLKEMVDANHDYRGDW 222


>gi|71083586|ref|YP_266305.1| NADH dehydrogenase I subunit E [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062699|gb|AAZ21702.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 202

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 93/203 (45%), Positives = 129/203 (63%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MS+R+ A+E  QP  F F+ +S     E+IS+YP  + QSAV+ LL  AQ+Q   W+  A
Sbjct: 1   MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +   LDM YI+V E+ATFYT + LSPVG +  +QVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     ++D + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D    G+  T
Sbjct: 118 ISENENELSTDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +LLD
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198


>gi|255627569|gb|ACU14129.1| unknown [Glycine max]
          Length = 251

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++      +      + F+E +   V E++S YP +  QSA IPLL  AQ+Q G W+  +
Sbjct: 28  LNYHLDTPDNNPKLPWEFTEANQAKVKEILSHYPSNYKQSATIPLLDLAQQQHGGWLPVS 87

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA I+++  IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + E     
Sbjct: 88  AMDAVAKIVEVPPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRGIEEALLKH 146

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI+
Sbjct: 147 LGVKRNEVTPDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDITPEKVVEIV 206

Query: 170 DAFSTGQGDTIRPGPQIDRI-SSAPAGGLTSLLDNNSKKR 208
           +     +G+    G Q  R   S P GG T+LL       
Sbjct: 207 EKLR--KGEKPPHGTQNPRRIKSGPEGGNTTLLSEPKPPP 244


>gi|296283835|ref|ZP_06861833.1| NADH-quinone oxidoreductase, E subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 222

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/226 (41%), Positives = 131/226 (57%), Gaps = 19/226 (8%)

Query: 1   MSVRRLAEEEFQ----PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ---- 52
           M+ R  A +  +      +F+F+ +      + ++RYP  R +SAV+PLL  AQ Q    
Sbjct: 1   MADRTPAPDTPELRERWGNFAFNADYEAKAQKALARYPEGRKKSAVMPLLDLAQRQVGEE 60

Query: 53  ---EGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
              +GW+    IE VAN LDM  IRVLE+ATFY  + ++PVG + HVQVCGTTPCMLRG 
Sbjct: 61  TDTQGWLPLPVIEYVANYLDMPVIRVLEVATFYFMYNMTPVG-KYHVQVCGTTPCMLRGS 119

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + +I  C+ +   K    + DG  +  EVEC G C  APMV I  D YEDLT ERL+ ++
Sbjct: 120 DDIIAACKKR-GMKKGEVSEDGLWTLTEVECMGNCATAPMVQINDDNYEDLTVERLDAVL 178

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLD---NNSKKRGKK 211
           DA +  +G+  + G Q   R +S P+GG T+L +    N   RG+ 
Sbjct: 179 DALA--KGEQPKTGTQEPGRHTSEPSGGPTTLKEMVTENHDYRGEW 222


>gi|148706374|gb|EDL38321.1| mCG9061, isoform CRA_b [Mus musculus]
          Length = 211

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 1/159 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 48  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 107

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 108 MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 166

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             K      D   +  EVEC GACVNAPMV I  + Y  
Sbjct: 167 GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYVR 205


>gi|302765070|ref|XP_002965956.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
 gi|300166770|gb|EFJ33376.1| hypothetical protein SELMODRAFT_83866 [Selaginella moellendorffii]
          Length = 222

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 15/217 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
              +++  + + F F++ +     E++S YP +  QSAVIPLL  AQ+Q G W+  +A+ 
Sbjct: 2   HINSQDNNENTPFEFTKANMDKAKEIMSHYPLNYKQSAVIPLLDLAQQQHGGWLPVSAMN 61

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A I+ +  IRV E+ATFY+ F  + VG + H+QVCGTTPCM+RG   +       +  
Sbjct: 62  KIAEIIGVPSIRVYEVATFYSMFNRTKVG-KYHIQVCGTTPCMIRGSRDIEAALLKHLGV 120

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
           K      DG  S  E+EC G CVNAPMV++            + YEDLTP+R+ EI++  
Sbjct: 121 KRNEVTKDGMFSVGEMECMGCCVNAPMVVVSDYTNGSEGYSYNYYEDLTPKRVVEIVEML 180

Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
              +G+    G Q   RI   PAGG T+LL +     
Sbjct: 181 R--KGEKPPVGTQNPTRIKCGPAGGNTTLLSDPKPPP 215


>gi|262277297|ref|ZP_06055090.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
 gi|262224400|gb|EEY74859.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           (nadh-ubiquinone oxidoreductase24 kda subunit) [alpha
           proteobacterium HIMB114]
          Length = 201

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 134/206 (65%), Gaps = 6/206 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS + +A+   QPSSF+F++E+   + EV+ +YP ++ +SAV+PLL  AQ Q   W+  A
Sbjct: 1   MSGKHVAK--NQPSSFAFTDENKKKIEEVLKKYPENKRKSAVMPLLYIAQRQNNNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI++++++L + YI+V E+ATFYT + L+PVG +  VQVC TTPCM+RG  K++EVC+  
Sbjct: 59  AIQLISDMLGVTYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCMIRGSGKVVEVCKKH 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +K  H N +   SW EVEC GACVNAPMV I  D +EDL  E+ E II  F  G+   
Sbjct: 118 ISEKQGHLNKELDSSWIEVECLGACVNAPMVQINDDYFEDLNAEKAEAIIKGFKEGKLPN 177

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNS 205
           I  G Q  R  S P    T+LL  N+
Sbjct: 178 I--GSQSGRKGSEPIQNRTTLLKKNA 201


>gi|145544859|ref|XP_001458114.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425933|emb|CAK90717.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 117/201 (58%), Gaps = 6/201 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  ++      F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S +A++
Sbjct: 24  HRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A IL++  + V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    K++ 
Sbjct: 84  KIAKILEIPEMDVYETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
           K     +DG  + +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T +
Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199

Query: 182 PGPQIDRISSAPAGGLTSLLD 202
            GPQ  R ++    G T+L +
Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220


>gi|87200310|ref|YP_497567.1| NADH-quinone oxidoreductase, E subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135991|gb|ABD26733.1| NADH dehydrogenase subunit E [Novosphingobium aromaticivorans DSM
           12444]
          Length = 222

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 16/222 (7%)

Query: 2   SVRRLAEE-EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------E 53
            +   + E   +   F ++ E+A    ++++RYP  R +SAV+PLL  AQ Q       +
Sbjct: 5   FIEPDSPELRARWGGFEWTPENAEKAKQIVARYPAGRQRSAVMPLLDLAQRQVGAELNTQ 64

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
           GW+    +E VA+ LDM  IRV+E+ATFYT + ++P+G R HVQVCGTTPCMLRG + ++
Sbjct: 65  GWLPIPVMEYVASYLDMPVIRVVEVATFYTMYNIAPIG-RFHVQVCGTTPCMLRGSDDIL 123

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             C+ K   K  H   DG  +  EVEC G C +APMV I  D YEDLT   +E I+D  +
Sbjct: 124 AACKGK-GLKKGHTTPDGMFTLTEVECMGNCASAPMVQINDDNYEDLTAADMERILDELA 182

Query: 174 TGQGDTIRPGPQ-IDRISSAPAGG---LTSLLDNNSKKRGKK 211
            G+    + G Q   R +  PAG    LT+++  N   RG+ 
Sbjct: 183 EGK--QPKTGTQLPGRHTVEPAGALSNLTAMVTENHDYRGEW 222


>gi|255559917|ref|XP_002520977.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
 gi|223539814|gb|EEF41394.1| NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus
           communis]
          Length = 255

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + FSE++   V E+IS YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 32  LNYHIDSPDNNPNIPWEFSEKNKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 91

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA ++++A IRV E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     
Sbjct: 92  AMDAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKH 150

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI+
Sbjct: 151 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 210

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           D    G+      G Q   RI S P GG T+L        
Sbjct: 211 DMLRRGE--KPPHGTQNPKRIKSGPEGGNTTLNGEPKPPP 248


>gi|54299980|gb|AAV32681.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Nyctotherus
           ovalis]
          Length = 259

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 6/202 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
                E    + F F+ E+   +N ++ RYP +  +SAV+ LL  AQ+Q G +++ AA+ 
Sbjct: 29  HHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLAAMN 88

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA IL+M  + V E+A FY+ F    VG +  +Q+CGTTPC+L G   +++ C + +  
Sbjct: 89  KVAKILEMTNLNVYEVAAFYSMFNREKVG-KIRLQICGTTPCLLCGARDIMKACEDHLGI 147

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
           K      DG  + EEVEC G C NAPM+ +  +  YEDLTPE + E+++ F   +G+ I+
Sbjct: 148 KMGGTTKDGMFTLEEVECLGVCANAPMMQVNNEKVYEDLTPEIMPEMLEKFR--KGEEIK 205

Query: 182 PGPQI-DRISSAPAGGLTSLLD 202
            GPQ   R ++    G T+L D
Sbjct: 206 AGPQTKGRKNAEGPLGRTTLND 227


>gi|304319953|ref|YP_003853596.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
 gi|303298856|gb|ADM08455.1| NADH dehydrogenase I, E subunit [Parvularcula bermudensis HTCC2503]
          Length = 221

 Score =  251 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/218 (47%), Positives = 131/218 (60%), Gaps = 7/218 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+ R  +    QP SF ++E++  W  + I+++P  R  SAVIP L RAQ+QEGWVS  A
Sbjct: 1   MADR--SPARQQPDSFQWTEDNKAWCEKEITKFPEGRQASAVIPFLWRAQKQEGWVSIPA 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +E +A  L M YIRV E+ATFYT F L PVGT   VQVCGTTPCMLRG E LIEVC   I
Sbjct: 59  MEAIATQLGMPYIRVYEVATFYTMFNLKPVGT-YFVQVCGTTPCMLRGSESLIEVCERVI 117

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             +       G LSW EVEC GAC NAPM  I    Y+DLTPE+ EEI+   +  +G+ +
Sbjct: 118 GPQ-GAITESGHLSWLEVECLGACCNAPMAQINDYYYQDLTPEKFEEIL--LTLDKGEAV 174

Query: 181 RPGP-QIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            PG     R +S P G  T+L D +       K  D++
Sbjct: 175 APGVFNPARHTSDPEGDNTTLTDESLYDGSAAKPIDRL 212


>gi|118368650|ref|XP_001017531.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila]
 gi|89299298|gb|EAR97286.1| NADH-quinone oxidoreductase, E subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 274

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 6/206 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++  R  ++      F F+ E+   + +++++YP  + +SAV+PLL   QEQ   WV  +
Sbjct: 27  LAAHRKNDDNSDSVPFEFTPENYKEIEKILAKYPLKQKRSAVMPLLYLVQEQNNNWVPLS 86

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A +L+M  I V E+ATFYT +   PVG + H+Q+CGTTPC L G  ++ +     
Sbjct: 87  AMKKIAKLLEMPEIDVYEVATFYTMYNREPVG-KFHLQICGTTPCQLCGSREITKAIEEY 145

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGD 178
              K  H ++DG  + EEVEC GAC NAPM+ +     YEDLT E + +++    +G   
Sbjct: 146 TQTKLGHTSADGKWTLEEVECLGACSNAPMIQVNNKWVYEDLTTENVVKLLKDLESG--- 202

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNN 204
           T + GPQ  R       G ++L + +
Sbjct: 203 TDKKGPQNHRNQVEGPLGRSTLKEKD 228


>gi|294083715|ref|YP_003550472.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663287|gb|ADE38388.1| NADH dehydrogenase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 215

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 7/214 (3%)

Query: 1   MSVR-RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSR 58
           MS+  R+AE+  QP+SF+F+ E+   +  +I++YP  R  SAV+PLL  AQ Q   W+  
Sbjct: 1   MSIEARIAED--QPNSFAFTAENEAEIKRIIAKYPKGRQASAVMPLLDMAQRQHENWIPM 58

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
            AIE++A+ LDMA IRVLE+ATFYT F L PVG +  +Q C TTPC LRG ++++   ++
Sbjct: 59  KAIELIADKLDMAKIRVLEVATFYTMFNLKPVG-KYFLQACTTTPCWLRGSDEMMRCIKD 117

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +        +  G  S  EVEC GACVNAP++ +  D YEDL  +    ++D+    +  
Sbjct: 118 RYGITSGQTSDCGRFSLLEVECLGACVNAPILQVNDDFYEDLNYQSTGALLDSLE--KDA 175

Query: 179 TIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKK 212
            +  G  + R  S  +GG TSL     KK  K K
Sbjct: 176 PLAVGSVLGRSGSEASGGATSLNAIKPKKTAKAK 209


>gi|91761993|ref|ZP_01263958.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717795|gb|EAS84445.1| NADH Dehydrogenase I Chain E [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 202

 Score =  251 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MS+R+ A+E  QP  F F+ +S     E+IS+YP  + QSAV+ LL  AQ+Q   W+  A
Sbjct: 1   MSLRKPAKE--QPEKFEFTADSLAAAKEMISKYPEGKQQSAVMALLYIAQKQNDNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +   LDM YI+V E+ATFYT + LSPVG +  +QVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIGKFLDMPYIKVYEVATFYTMYNLSPVG-KHFIQVCTTTPCMIRGAYKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     +++ + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D    G+  T
Sbjct: 118 ISENENELSTNKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDEILDGK--T 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +LLD
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLLD 198


>gi|163793191|ref|ZP_02187167.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
 gi|159181837|gb|EDP66349.1| NADH-quinone oxidoreductase chain E [alpha proteobacterium BAL199]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 4/201 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MS + +AE++ QP+SF+++ +S   +  ++++YP  R  SAV+PLL  AQ Q   W+  A
Sbjct: 1   MSSKPIAEDKDQPASFTWTPQSEKQIAVILAKYPEGRQSSAVLPLLDLAQRQHDNWIPLA 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A  LDMA IRVLE+ATFYT + L+PVG +  +Q C TTPC LRG ++++   ++K
Sbjct: 61  AIDAIAARLDMARIRVLEVATFYTMYNLAPVG-KWFLQACTTTPCWLRGSDQMMRCIKDK 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +      R +DG  S  EVEC GACVNAP++ +  D YED+  E    +IDA   G+   
Sbjct: 120 LGLDNHGRTADGQFSLLEVECLGACVNAPILQVNDDFYEDMDYETTATLIDALKRGEPPV 179

Query: 180 IRPGPQIDRISSAPAGGLTSL 200
           +  G    R +S    G TSL
Sbjct: 180 V--GSMKGRQTSQSIAGPTSL 198


>gi|297814049|ref|XP_002874908.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320745|gb|EFH51167.1| hypothetical protein ARALYDRAFT_490304 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 255

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 15/216 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 32  LNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQHGGWLPVS 91

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + 
Sbjct: 92  AMNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDH 150

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI+
Sbjct: 151 LGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 210

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
           +     +G+    G Q   RI   P GG T+LL   
Sbjct: 211 EKLR--KGEKPPHGTQNPKRIKCGPEGGNTTLLGEP 244


>gi|124088387|ref|XP_001347081.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Paramecium
           tetraurelia strain d4-2]
 gi|145474399|ref|XP_001423222.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057470|emb|CAH03454.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative [Paramecium
           tetraurelia]
 gi|124390282|emb|CAK55824.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 117/201 (58%), Gaps = 6/201 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  ++      F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S +A++
Sbjct: 24  HRNRDDNSDSVPFDFTDENYKKIEAILTKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A IL++  + V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    K++ 
Sbjct: 84  KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKTIEQKLNI 142

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
           K     +DG  + +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T +
Sbjct: 143 KNGETTADGLYTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199

Query: 182 PGPQIDRISSAPAGGLTSLLD 202
            GPQ  R ++    G T+L +
Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220


>gi|145507360|ref|XP_001439635.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406830|emb|CAK72238.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 118/201 (58%), Gaps = 6/201 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  ++      F F++E+   +  ++S++P +  +S  IPLLM AQ+Q   ++S +A++
Sbjct: 24  HRNRDDNSDSVPFDFTDENYKKIEGILSKFPSNEKKSGTIPLLMLAQKQNNNFLSLSAMK 83

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A IL++  + V E A+FY+ F    VG + H+QVCGTTPC L G + +I+    +++ 
Sbjct: 84  KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSKDIIKAIEQQLNI 142

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
           K    ++DG  + +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T +
Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMMQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199

Query: 182 PGPQIDRISSAPAGGLTSLLD 202
            GPQ  R ++    G T+L +
Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220


>gi|103486792|ref|YP_616353.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98976869|gb|ABF53020.1| NADH-quinone oxidoreductase, E subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 222

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 15/217 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +  +F+++ E+A     VI+RYP  R +SAV+PLL  AQ Q       +GW+  
Sbjct: 10  EAETRARWGAFAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             IE VA  LDM +IR  E+ATFYT + L+PVG R HVQVCGTTPC+LRG + +   C+N
Sbjct: 70  PVIEYVAAQLDMPFIRAYEVATFYTMYNLAPVG-RYHVQVCGTTPCLLRGSDDVTAACKN 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           +   K      DG  +  EVEC G C NAPMV I  D YEDL  + +  I+D  + G+  
Sbjct: 129 RGMVK-GKTTPDGLFTLSEVECMGTCANAPMVQINDDNYEDLDYDSMTRILDELAAGK-- 185

Query: 179 TIRPGPQI-DRISSAPAGGLTSL---LDNNSKKRGKK 211
             + G Q   R +S P GG T+L   ++ N   R + 
Sbjct: 186 QPKTGTQNPRRHTSEPEGGPTTLKEMVEANHDYRKEW 222


>gi|224062258|ref|XP_002300805.1| predicted protein [Populus trichocarpa]
 gi|222842531|gb|EEE80078.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++      E      + F+  +   V E+IS YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 31  LNYHLNTPENNPDLPWEFTAANKEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA ++++A IRV E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     
Sbjct: 91  AMNAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALVKH 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI+
Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 209

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           +     +G+    G Q   R    P GG T+L        
Sbjct: 210 EMLR--KGEKPPHGTQNPQRTKCGPEGGNTTLHGEPKPPP 247


>gi|254796983|ref|YP_003081820.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
           Illinois]
 gi|254590224|gb|ACT69586.1| NADH-quinone oxidoreductase chain e [Neorickettsia risticii str.
           Illinois]
          Length = 172

 Score =  248 bits (634), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
           +R+A    QP  F FSEE++  V  ++++YP SR +SA++PLL   Q+Q   W+  AA++
Sbjct: 3   KRIAHASIQPDKFWFSEENSQEVARILAKYPASRKRSAILPLLHLVQKQHENWIPIAAMD 62

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L +  I+V E+ +FY+ F  +PVG +  ++VC TTPC LRG + L +  + ++  
Sbjct: 63  HVAQLLGLPAIKVYEVVSFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLTKAAKRELGI 121

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           K  H   D   S +EVEC GACVNAP+V I  D +E+L  +   E++    
Sbjct: 122 KVGHTTEDNKFSLDEVECLGACVNAPVVQINDDYFENLDEKSFLELLSRLK 172


>gi|168027742|ref|XP_001766388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682297|gb|EDQ68716.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 243

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 18/226 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +S      +      + F+  +   V E++S YP +  QSAVIPLL  AQ+Q+G W+   
Sbjct: 20  LSSHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPLLDLAQQQQGGWLPVQ 79

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A I+  A IRV E+ATFY+ F   PVG R H+ VCGTTPCMLRG  ++ +     
Sbjct: 80  AMNRIAEIVGYAPIRVYEVATFYSMFNRQPVG-RYHLLVCGTTPCMLRGSREIEDALLKH 138

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           ++        DG  S  EVEC G+CVNAPM+++            + YEDLT ER+ E++
Sbjct: 139 LNVARNEVTKDGLFSVGEVECMGSCVNAPMIVVADYSNGVEGYSYNYYEDLTTERVVELV 198

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
           +    G+    + G Q  +RI+  PAGG T+LL      R    +D
Sbjct: 199 EELRQGK--KPKWGTQHPERINCGPAGGNTTLLTEP---RAPACRD 239


>gi|159480876|ref|XP_001698508.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
 gi|34328782|gb|AAQ63695.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas
           reinhardtii]
 gi|158282248|gb|EDP08001.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Chlamydomonas
           reinhardtii]
          Length = 282

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 27/224 (12%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
            ++ +   E    +SF FSE +   VN++I+RYPP+  QSA+IP+L   Q++ G W+S A
Sbjct: 48  FNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLSLA 107

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +LDMA IRV E+ATFYT F  + +G + HVQ+CGTTPC L+G +K+ E     
Sbjct: 108 AMNRVAKLLDMAPIRVYEVATFYTMFNRTKIG-KYHVQICGTTPCRLQGSQKIEEAITKH 166

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +         DG  +  E+EC GACVNAPMV I              YEDLTP+ +  I+
Sbjct: 167 LGIGIGQTTQDGLFTLGEMECMGACVNAPMVAIADYTKGVSGFEYIYYEDLTPKDIVNIL 226

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG------------GLTSLL 201
           D     +G   +PG Q  R+ + PAG            G T+L 
Sbjct: 227 DTIK--KGGKPKPGSQY-RLKAEPAGAVHGGEKWVPKDGETTLT 267


>gi|290984759|ref|XP_002675094.1| predicted protein [Naegleria gruberi]
 gi|284088688|gb|EFC42350.1| predicted protein [Naegleria gruberi]
          Length = 260

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 14/224 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
               E     + F FS ES   + +++++YP    QS ++PLL  AQ Q G W+  AAI 
Sbjct: 32  HVDTEYNNVNTPFDFSPESYAEIKKILAKYPSKHKQSGILPLLHLAQRQNGGWIPLAAIN 91

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A I ++    V E  +FYT F   PVG + H+QVC TTPCM+ GC+ ++      +  
Sbjct: 92  KIAEICEVNPRNVFECVSFYTMFNTQPVG-KYHIQVCITTPCMITGCDNILATLEQHLGI 150

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAFS 173
           K      DG  +  E+EC G C NAPM+ +           D +EDLT  R  EII+   
Sbjct: 151 KLGETTQDGLFTLGEMECMGCCANAPMIAVSDYSNPPEFKYDYFEDLTAVRAIEIIEMLK 210

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLL--DNNSKKRGKKKKDD 215
            G+    + G Q  R  + P GG  +LL  D +  K   ++ D+
Sbjct: 211 KGEYPK-QIGSQNGRRYAEPLGGQKTLLFQDGDLPKPYCRELDE 253


>gi|310816711|ref|YP_003964675.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
 gi|308755446|gb|ADO43375.1| ATP synthase subunit E [Ketogulonicigenium vulgare Y25]
          Length = 238

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 115/207 (55%), Positives = 141/207 (68%), Gaps = 4/207 (1%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           +RRL  +  QP+SF+F+  +A W    I++YP  R  SA+IPLL RAQEQEGW++RAAIE
Sbjct: 2   LRRLHPD--QPASFAFTAANAAWAQLQIAKYPAGRQASAIIPLLWRAQEQEGWLTRAAIE 59

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VAN+L+M +IR LE+ATFY  FQL PVG  AH+Q+CGT  CML G E L+ VCR KI  
Sbjct: 60  HVANMLEMPFIRALEVATFYFMFQLQPVGAVAHLQICGTLSCMLCGAEDLVSVCRQKIAA 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +P   + DG LSWEEVEC GAC NAPM  IGKD YEDLT E L ++IDA   G  D  +P
Sbjct: 120 QPHSLSDDGKLSWEEVECLGACTNAPMAQIGKDYYEDLTAEGLSDLIDALRAG--DVPQP 177

Query: 183 GPQIDRISSAPAGGLTSLLDNNSKKRG 209
           GPQ  R S+ P GG T L +    K+ 
Sbjct: 178 GPQNGRFSAEPLGGATVLQNTPGDKQA 204


>gi|145505141|ref|XP_001438537.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405709|emb|CAK71140.1| unnamed protein product [Paramecium tetraurelia]
          Length = 263

 Score =  247 bits (632), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 6/201 (2%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
            R  ++      F F++E+   +  +++++P +  +S  IPLLM AQ+Q   ++S  A++
Sbjct: 24  HRNRDDNSDSVPFDFTDENYKKIEVILAKFPSNEKKSGTIPLLMLAQKQNNNFLSLTAMK 83

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            +A IL++  + V E A+FY+ F    VG + H+QVCGTTPC L G   +++    K++ 
Sbjct: 84  KIAKILEIPEMDVFETASFYSMFNRERVG-KFHLQVCGTTPCQLCGSRDIMKAIEQKLNI 142

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIR 181
           K    ++DG  + +EVEC GAC NAPM+ +  +  YEDLTPE   ++++    G   T +
Sbjct: 143 KNGETSADGLFTLQEVECLGACANAPMIQVNNEWVYEDLTPENTLKLLEDLKNG---TDK 199

Query: 182 PGPQIDRISSAPAGGLTSLLD 202
            GPQ  R ++    G T+L +
Sbjct: 200 KGPQNGRKNAEGPQGRTTLQN 220


>gi|326502384|dbj|BAJ95255.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326513656|dbj|BAJ87847.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326528649|dbj|BAJ97346.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326532778|dbj|BAJ89234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 277

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + F++ +   VNE++S YP +  QS +IP+L  AQ+Q G WV  A
Sbjct: 54  LNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 113

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A I+ +A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   + +     
Sbjct: 114 AMDAIAKIVGVAPIRVYEVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDIEDALLEH 172

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ E++
Sbjct: 173 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSDGYTYNYYEDLTPKRVVELV 232

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG+T+LL       
Sbjct: 233 EMLRRGE--TPPRGTQNPERKNCGPAGGMTTLLGEPKPPP 270


>gi|91205207|ref|YP_537562.1| NADH dehydrogenase subunit E [Rickettsia bellii RML369-C]
 gi|157827455|ref|YP_001496519.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
 gi|122990931|sp|Q1RJJ1|NUOE_RICBR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|91068751|gb|ABE04473.1| NADH dehydrogenase I chain E [Rickettsia bellii RML369-C]
 gi|157802759|gb|ABV79482.1| NADH dehydrogenase subunit E [Rickettsia bellii OSU 85-389]
          Length = 167

 Score =  247 bits (631), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/161 (48%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++FSF +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L PVG + H+QVC TTPC LRG + +++ C+ K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKPVG-KNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S  E+EC GACVNAP+V I  D YEDLTPE++E IID   
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTPEKMEAIIDKLR 165


>gi|254455445|ref|ZP_05068874.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082447|gb|EDZ59873.1| NADH dehydrogenase i chain e [Candidatus Pelagibacter sp. HTCC7211]
          Length = 202

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 6/203 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS++R A++  QP +F F+  S   V  ++S+YP  + QSAV+ LL  AQ Q   W+  A
Sbjct: 1   MSLKRPAKD--QPENFEFNSSSLEAVKNIVSKYPKGKQQSAVMALLYIAQRQNNNWIPLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A  L+M YI+V E+ATFYT + LSPVG    VQVC TTPCM+RG  KL+E C+ K
Sbjct: 59  AMKYIAKFLEMPYIKVYEVATFYTMYNLSPVGN-FFVQVCTTTPCMIRGANKLVEACKEK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I +     ++D + SW EVEC GACVNAPM+ I  D YEDL  E+  +I+D     +G+T
Sbjct: 118 ISENECELSNDKSCSWMEVECLGACVNAPMMQINDDYYEDLDKEKTLKILDKI--LKGET 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLD 202
            +PG    R+++ P     +L+D
Sbjct: 176 PKPGSYRGRVNNEPENNRKTLMD 198


>gi|18411985|ref|NP_567244.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
           [Arabidopsis thaliana]
 gi|55584146|sp|O22769|NDUV2_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial; Flags: Precursor
 gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|24797038|gb|AAN64531.1| At4g02580/T10P11_14 [Arabidopsis thaliana]
 gi|332656798|gb|AEE82198.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Arabidopsis
           thaliana]
          Length = 255

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 15/216 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 32  LNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVS 91

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + 
Sbjct: 92  AMNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDH 150

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI+
Sbjct: 151 LGVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIV 210

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
           +     +G+    G Q   RI   P GG  +LL   
Sbjct: 211 EKLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 244


>gi|302830969|ref|XP_002947050.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300267457|gb|EFJ51640.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 281

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 115/206 (55%), Gaps = 15/206 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
            +V +   E     +F F+E +   VNE+I+RYPP+   SA+IP+L  AQ+Q G W+S A
Sbjct: 49  FNVHKDTPENNASLTFDFTEANYKIVNEIIARYPPNYKASAIIPVLDVAQQQNGGWLSLA 108

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +LDMA IRV E+ATFYT F  + +G + HV +CGTTPC L+G + + E     
Sbjct: 109 ALNRVAKVLDMAPIRVYEVATFYTMFNRTKIG-KYHVLICGTTPCRLQGAQGIEEAVTKH 167

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +         DG  +  E+EC GACVNAPMV I              YEDLTP  +  I+
Sbjct: 168 LGIHIGQTTPDGLFTLGEMECMGACVNAPMVAIADYTKGVEGFEYTYYEDLTPSDIVGIL 227

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG 195
           D     +G   +PG Q  R  + PAG
Sbjct: 228 DTIK--KGGKPKPGSQ-HRSKAEPAG 250


>gi|168013098|ref|XP_001759238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689551|gb|EDQ75922.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 275

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 15/215 (6%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
                  +      + F+  +   V E++S YP +  QSAVIP+L  AQ+Q G W+S  A
Sbjct: 53  FAHVNTPDNNPDLKWDFTPANMEKVKELLSHYPKNYKQSAVIPMLDLAQQQNGGWLSVQA 112

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A I+D A IRV E+ATFY+ F   PVG + H+ VCGTTPCMLRG   + +     +
Sbjct: 113 MNRIAEIVDYAPIRVYEVATFYSMFNRQPVG-KYHLLVCGTTPCMLRGSRDIEDALLKHL 171

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
           H        DG  S  E+EC G CVNAPM+++            + YEDLTPER+ E+++
Sbjct: 172 HVARNEVTKDGLFSVGEMECMGCCVNAPMIVVADYSNGVEGYSYNYYEDLTPERVVELVE 231

Query: 171 AFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNN 204
               G+    + G Q   RI+  PAGG T+LL   
Sbjct: 232 ELKQGK--KPKWGTQHPKRINCGPAGGTTTLLSEP 264


>gi|189211391|ref|XP_001942026.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978119|gb|EDU44745.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 284

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 107/254 (42%), Gaps = 56/254 (22%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           ++V R   +      F F+ ++   + EV+SRYP    ++AV+PLL   Q Q G+ S + 
Sbjct: 41  LNVHRDTPQNNLKIPFKFTPQNEELIKEVVSRYPSQYKKAAVMPLLDLGQRQHGFCSISV 100

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL+M  +RV E+ATFYT +   PVG + HVQVC T              C + +
Sbjct: 101 MNEVARILEMPPMRVYEVATFYTMYNRDPVG-KFHVQVCTT-------------ACEDVL 146

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS------- 173
                    DG  ++ EVEC GAC NAPMV I  D YEDLT +    ++ A         
Sbjct: 147 GVHHGETTPDGLFTFSEVECLGACANAPMVQINDDYYEDLTYDSTVNLLKALKHAAQATG 206

Query: 174 -----------TGQG------------------------DTIRPGPQIDRISSAPAGGLT 198
                       G+G                            PGP   R S  PAGGLT
Sbjct: 207 AQPGDKGLASGAGKGTATGEGAGDAVANAQARQYEAGGVKVPSPGPLSGRASCEPAGGLT 266

Query: 199 SLLDNNSKKRGKKK 212
            L          +K
Sbjct: 267 CLTSEPWGNETLRK 280


>gi|323456618|gb|EGB12485.1| hypothetical protein AURANDRAFT_59800 [Aureococcus anophagefferens]
          Length = 265

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 5/212 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++      +  + ++F FS ++ +    ++ +YP +   S +IPLL  AQ Q G W+  A
Sbjct: 34  LAQHVNTGDNTKETTFDFSPDNHLRAEHILGKYPANYKMSGIIPLLDLAQRQSGGWLPLA 93

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA  +  A +RV E+ATFYT F    VGT   +Q+CGTTPCM+ G E + +   + 
Sbjct: 94  AMDKVAKYVGCAPMRVYEVATFYTMFNREQVGT-YFIQLCGTTPCMVCGSEAIKKSIEDH 152

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  K    + DG  +  EVEC GAC NAPM+ +  D YE LTP+ +  +++A   G+   
Sbjct: 153 LGIKEGETSKDGLFTLREVECLGACANAPMIQMNDDYYECLTPDSMVALLEACKKGEPHA 212

Query: 180 I-RPG--PQIDRISSAPAGGLTSLLDNNSKKR 208
           + R G  P   ++S     G TSL      + 
Sbjct: 213 MGRWGSLPMNGQVSCEGPAGKTSLASAPGPQP 244


>gi|3892051|gb|AAC78260.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
 gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase 24 kD subunit [Arabidopsis thaliana]
          Length = 244

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 15/215 (6%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
           S    + +      + FSE +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A
Sbjct: 22  SQHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSA 81

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +
Sbjct: 82  MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 140

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
             K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI++
Sbjct: 141 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 200

Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
                +G+    G Q   RI   P GG  +LL   
Sbjct: 201 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 233


>gi|303287006|ref|XP_003062792.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455428|gb|EEH52731.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 112/216 (51%), Gaps = 15/216 (6%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
           S  R          + F+E +A  V E++ RYPP+  +SA+IPLL  AQ+Q G ++S   
Sbjct: 1   SQHRDTPTNNDALKWDFTEANAPLVREILERYPPNYKRSAMIPLLDVAQQQNGGYLSVQV 60

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL++A IRV E+ATFY+ F   PVG + HV VCGTTPCMLRG  ++       +
Sbjct: 61  MNRVAEILEVAPIRVFEVATFYSMFNRQPVG-KYHVMVCGTTPCMLRGSREVNAALEQHL 119

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
             K      DG  +  E+EC G+CVNAPM+ +            + YEDLTP     ++ 
Sbjct: 120 GIKKFENTPDGMFTLGEMECMGSCVNAPMIAVADYTNGVEGYTYNYYEDLTPADAVAVVK 179

Query: 171 AFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
           A   GQ    R G Q  R  + P GG  +L      
Sbjct: 180 ALKAGQ--KPRVGSQ-HRDKAEPMGGQQTLTSEPPG 212


>gi|116792560|gb|ABK26414.1| unknown [Picea sitchensis]
          Length = 253

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + F+E +   V E+I+ YP +  QSAVI LL  AQ+Q G W+  +
Sbjct: 30  LNYHLDSPDNNPNVPWEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVS 89

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +L+MA IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG   +       
Sbjct: 90  AMNKVAEVLEMAPIRVFEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSCDIEGAILKH 148

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI+
Sbjct: 149 LGVKRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIV 208

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  DRI + PAGG T+LL       
Sbjct: 209 EMLRRGE--TPPVGTQNPDRIMAGPAGGNTTLLSEPKPPP 246


>gi|194748993|ref|XP_001956924.1| GF24324 [Drosophila ananassae]
 gi|190624206|gb|EDV39730.1| GF24324 [Drosophila ananassae]
          Length = 236

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 4/200 (2%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F F+EE+   V  ++  YP +  + A+IPLL  AQ Q+GW+S +A++ VA+++ +  ++
Sbjct: 36  EFKFTEENKRRVKALLVWYPEAEWKGALIPLLDIAQRQQGWLSISAVKAVADVIKIDPMK 95

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
             E A FYT F + P G +  ++VC +TPC LRG + +  +C   +  K    + D   +
Sbjct: 96  AYEAAQFYTMFFMKPRG-KYVIRVCTSTPCKLRGGDDIYALCETILKLKHGETSPDMQFT 154

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
            ++  C GACVNAP++ +  D YEDL  + +++I++     +      GP+  R SS P 
Sbjct: 155 LKDDYCLGACVNAPVLSVNDDFYEDLDEKSVKQILEDLKNDK--LPPSGPRNGRYSSEPK 212

Query: 195 GGLTSLLDNNSKKRGKKKKD 214
           GGLTSL +      G   ++
Sbjct: 213 GGLTSLKE-PPPPPGFMMQE 231


>gi|224085575|ref|XP_002307624.1| predicted protein [Populus trichocarpa]
 gi|222857073|gb|EEE94620.1| predicted protein [Populus trichocarpa]
          Length = 254

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++      +      + FS  +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 31  LNYHIDTADNNPDLPWEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA ++++A IRV E+ATFY+ F  SPVG + H+ VCGTTPCM+RG  ++ +     
Sbjct: 91  AMNAVAKVIEVAPIRVYEVATFYSMFNRSPVG-KYHLLVCGTTPCMIRGSREIEDALLKH 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI+
Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVVEIV 209

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNNSKKR 208
           +     +G+    G Q   RI   P GG T+L        
Sbjct: 210 EMLR--KGEKPPHGTQNPKRIKCGPEGGNTTLHGEPKPPP 247


>gi|225437209|ref|XP_002281655.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735489|emb|CBI17929.3| unnamed protein product [Vitis vinifera]
          Length = 254

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 15/216 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + +      + F++ +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +
Sbjct: 31  LNYHLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 90

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG  ++ +     
Sbjct: 91  AMDAVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKH 149

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI+
Sbjct: 150 LGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIV 209

Query: 170 DAFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
           +    G+      G Q   R    P GG T+LL   
Sbjct: 210 EMLRRGE--KPPHGTQNPQRTRCGPEGGNTTLLGEP 243


>gi|332185730|ref|ZP_08387477.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
 gi|332014088|gb|EGI56146.1| NADH-quinone oxidoreductase, E subunit [Sphingomonas sp. S17]
          Length = 224

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 15/217 (6%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-------EGWVSR 58
            AE   +  +F++++E+    NE+++RYP  R QS  IP L  AQ Q       +GW+  
Sbjct: 10  EAEVRARWGNFAWTDENQRKANEILARYPKGREQSCSIPFLDLAQRQVGAETQTQGWLPV 69

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             IE VA  L +AY+R+ E+ATFYT F L+PVG R HVQVCGTTPCMLRG + ++  C+N
Sbjct: 70  PVIEFVARQLGVAYMRIYEVATFYTMFNLAPVG-RYHVQVCGTTPCMLRGSDDVLAACKN 128

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           K   K      DG  +  EVEC G C +APMV I  D +EDL  +R   I++A + G+  
Sbjct: 129 KGLIK-GKTTPDGLFTLTEVECMGNCASAPMVQINDDNFEDLDYDRTVTILEALARGE-- 185

Query: 179 TIRPGPQ-IDRISSAPAGGLTSLL---DNNSKKRGKK 211
           + + G Q   R +  P GG T+L     +N   RG+ 
Sbjct: 186 SPKTGTQEPGRHTVEPLGGPTTLTAMVGDNHDYRGEW 222


>gi|222632177|gb|EEE64309.1| hypothetical protein OsJ_19146 [Oryza sativa Japonica Group]
          Length = 274

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  A
Sbjct: 51  LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267


>gi|218197075|gb|EEC79502.1| hypothetical protein OsI_20569 [Oryza sativa Indica Group]
          Length = 274

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  A
Sbjct: 51  LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267


>gi|115464801|ref|NP_001056000.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|48475199|gb|AAT44268.1| putative NADH-ubiquinone oxidoreductase [Oryza sativa Japonica
           Group]
 gi|113579551|dbj|BAF17914.1| Os05g0509200 [Oryza sativa Japonica Group]
 gi|215692591|dbj|BAG88011.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704428|dbj|BAG93862.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + F+E +   VNE++S YP +  QS +IP+L  AQ+Q G WV  A
Sbjct: 51  LNYHLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVA 110

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 111 AMNAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEEALLEH 169

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 170 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 229

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 230 EMLKRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 267


>gi|195017667|ref|XP_001984640.1| GH14917 [Drosophila grimshawi]
 gi|193898122|gb|EDV96988.1| GH14917 [Drosophila grimshawi]
          Length = 248

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 3/195 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
             S F F+ E+     E++S YP +  + A++PLL  AQ Q GW+   AI+ VA++L + 
Sbjct: 41  DTSKFEFTAENKCRAQELLSHYPENEMRGALLPLLDIAQRQHGWLPITAIQAVASLLKLE 100

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V E+A+FYT F L+PVG + H++VC TTPC LRGC ++++ C   +H K    + D 
Sbjct: 101 PFAVWEVASFYTMFNLTPVG-KFHIKVCMTTPCQLRGCAQILQKCEELLHLKAGETSEDM 159

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
             + +   C GACV+AP++ +  D YEDL  + +E I+     G  +    GP+  R ++
Sbjct: 160 EFTLKTTYCIGACVHAPVMTVNDDLYEDLHIKDVENILCQLKAG--NVPPCGPRKGRFAN 217

Query: 192 APAGGLTSLLDNNSK 206
            P+ G+T+L      
Sbjct: 218 EPSSGVTTLFIEPPP 232


>gi|88608494|ref|YP_506514.1| NADH dehydrogenase subunit E [Neorickettsia sennetsu str. Miyayama]
 gi|88600663|gb|ABD46131.1| NADH dehydrogenase I, E subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 181

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
           +R+A    QP  F FSEE++  V  ++++YP SR +SAV+PLL   Q Q   W+  AA++
Sbjct: 12  KRIAHASIQPDKFCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMD 71

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L +  I+V E+A+FY+ F  +PVG +  ++VC TTPC LRG + LIE  + ++  
Sbjct: 72  HVAQLLGLPVIKVYEVASFYSMFNTAPVG-KHTIRVCRTTPCWLRGSDCLIEAAKRELGI 130

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           K  H+  D   S +EVEC GACV+AP+V I  D +E+L      E++    
Sbjct: 131 KVGHKTEDNKFSLDEVECLGACVSAPVVQINDDYFENLDERSFLELLSRLK 181


>gi|195494886|ref|XP_002095032.1| GE22166 [Drosophila yakuba]
 gi|194181133|gb|EDW94744.1| GE22166 [Drosophila yakuba]
          Length = 241

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 3/201 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A E  +   F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA
Sbjct: 27  DATEMRKTLKFEFSKDNQRRVKALLAWYPRAEWKGALLPLLDIAQRQQGWLSISAVQAVA 86

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             + +  +   E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +  
Sbjct: 87  ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 145

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               D   + +E  C GACVNAP++ +  D YEDL  + L  I+      +      GP+
Sbjct: 146 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPR 203

Query: 186 IDRISSAPAGGLTSLLDNNSK 206
             R +S P GGLT+L      
Sbjct: 204 NGRFASEPKGGLTTLKTEPPP 224


>gi|147797328|emb|CAN67085.1| hypothetical protein VITISV_036396 [Vitis vinifera]
          Length = 243

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 15/213 (7%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIE 62
              + +      + F++ +   V E++S YP +  QSAVIPLL  AQ+Q G W+  +A++
Sbjct: 23  HLDSPDNNPNIPWEFNDANKGKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMD 82

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG  ++ +     +  
Sbjct: 83  AVAKVVEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSREIEDALLKHLGV 141

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
           K      DG  S  E+EC G CVNAPM+ +            + YED+TP+R+ EI++  
Sbjct: 142 KRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSTGSEGYTYNYYEDVTPKRVVEIVEML 201

Query: 173 STGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
             G+      G Q   R    P GG T+LL   
Sbjct: 202 RRGE--KPPHGTQNPQRTRCGPEGGNTTLLGEP 232


>gi|157825612|ref|YP_001493332.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
 gi|157799570|gb|ABV74824.1| NADH dehydrogenase subunit E [Rickettsia akari str. Hartford]
          Length = 167

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFTFDKKNLNLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L  VG + H+ VC TTPC LRG + ++++C+ K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKRVG-KYHIHVCTTTPCWLRGSDDIMKICKKKLGIKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP++ I  D YEDLTPE++E++ID   
Sbjct: 125 FTLSEIECLGACVNAPVLQINDDYYEDLTPEKMEKLIDRLQ 165


>gi|195375871|ref|XP_002046722.1| GJ13038 [Drosophila virilis]
 gi|194153880|gb|EDW69064.1| GJ13038 [Drosophila virilis]
          Length = 247

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/201 (35%), Positives = 104/201 (51%), Gaps = 3/201 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A   +    F F+EE+   V E++  YP    + A++PLL  AQ Q GW+   AI+ VA
Sbjct: 34  DACNMYDKLKFEFTEENKCRVKELLGSYPEKELRGALLPLLDLAQRQHGWLPITAIQAVA 93

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V E+A FYT F + P+G +  V+VC TTPC LRGC  ++ +C   +  K  
Sbjct: 94  EVLKLEPFAVWEVANFYTMFNMRPIG-KYRVKVCMTTPCQLRGCADVLRICEKTLDLKDG 152

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
             + D   +     C GACVN P++ +  D YEDL  +  E+I+     G+     PGP+
Sbjct: 153 ETSKDMEFTLNTTYCMGACVNGPVMSVNDDLYEDLNVDETEKILCELKDGK--LPPPGPR 210

Query: 186 IDRISSAPAGGLTSLLDNNSK 206
             R +S P  G TSLL     
Sbjct: 211 SGRFASEPITGPTSLLMEAPP 231


>gi|224028933|gb|ACN33542.1| unknown [Zea mays]
          Length = 281

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  A
Sbjct: 58  LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 117

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 118 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 176

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 177 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 236

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 237 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLQGEPKPPP 274


>gi|195591030|ref|XP_002085246.1| GD12420 [Drosophila simulans]
 gi|194197255|gb|EDX10831.1| GD12420 [Drosophila simulans]
          Length = 238

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 3/201 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A E  +   F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA
Sbjct: 24  NATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVA 83

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             + +  +   E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +  
Sbjct: 84  ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 142

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               D   + +E  C GACVNAP++ +  D YEDL  + L +I+      +      GP+
Sbjct: 143 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLAKILADLRNDK--LPPAGPR 200

Query: 186 IDRISSAPAGGLTSLLDNNSK 206
             R +  P GGLT+L      
Sbjct: 201 NGRFACEPKGGLTTLKIKPPP 221


>gi|157964433|ref|YP_001499257.1| NADH dehydrogenase subunit E [Rickettsia massiliae MTU5]
 gi|157844209|gb|ABV84710.1| NADH dehydrogenase I chain E [Rickettsia massiliae MTU5]
          Length = 167

 Score =  241 bits (616), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKQVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++E+IID   
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMEKIIDKLQ 165


>gi|307109153|gb|EFN57391.1| hypothetical protein CHLNCDRAFT_34626 [Chlorella variabilis]
          Length = 293

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 15/206 (7%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
            +  R        + F F++ +     E+ISRYP +   SAVIPLL  AQ+Q  GW+S A
Sbjct: 49  FNTHRHEAHNNWDTEFDFTDANYEKAAEIISRYPTNYKASAVIPLLDLAQQQNDGWLSLA 108

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  VA +LDM  IRV E+ATFYT F  S +G + HV VCGTTPCML+G + + +  +  
Sbjct: 109 AMNRVAKVLDMPEIRVYEVATFYTMFNRSKMG-KYHVMVCGTTPCMLQGAKGIYKALKEH 167

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +         DG  +  E+EC GACVNAPM+ +            + YEDLTP     II
Sbjct: 168 LGIDYGQTTPDGMFTLGEMECMGACVNAPMIAVADYTKGVEGFSYNYYEDLTPADTLAII 227

Query: 170 DAFSTGQGDTIRPGPQIDRISSAPAG 195
           D     +G   + G Q  R  + PAG
Sbjct: 228 DTLK--KGGKPKVGSQ-HRSKAEPAG 250


>gi|226500344|ref|NP_001140609.1| hypothetical protein LOC100272681 [Zea mays]
 gi|194700168|gb|ACF84168.1| unknown [Zea mays]
          Length = 324

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  A
Sbjct: 101 LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 160

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 161 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 219

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 220 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 279

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 280 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 317


>gi|195328340|ref|XP_002030873.1| GM24346 [Drosophila sechellia]
 gi|194119816|gb|EDW41859.1| GM24346 [Drosophila sechellia]
          Length = 241

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 4/209 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A E  +   F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA
Sbjct: 27  NATEIRKTLKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVA 86

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             + +  +   E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +  
Sbjct: 87  ENIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHG 145

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               D   + +E  C GACVNAP++ +  D YEDL  + L  I+      +      GP+
Sbjct: 146 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPR 203

Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
             R +S P GGLT+L        G   + 
Sbjct: 204 NGRFASEPKGGLTTLK-IPPPPPGFMMQK 231


>gi|194872081|ref|XP_001972962.1| GG15826 [Drosophila erecta]
 gi|190654745|gb|EDV51988.1| GG15826 [Drosophila erecta]
          Length = 238

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 3/208 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A +  +   F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA
Sbjct: 24  DATKMRKTLKFEFSKDNQRRVKALLAWYPKAEWKGALLPLLDIAQRQQGWLSISAVQAVA 83

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             + +  +   E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +  
Sbjct: 84  ETIKIDPMEAFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKALNLEHG 142

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               D   + +E  C GACVNAP++ +  D YEDL  + L  I+      +      GP+
Sbjct: 143 QTTPDMQFTLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLASILADLRNDK--LPPAGPR 200

Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKK 213
             R +S P GGLT+L           +K
Sbjct: 201 NGRCASEPKGGLTTLKSEPPPPGYMMQK 228


>gi|195638060|gb|ACG38498.1| NADH-ubiquinone oxidoreductase 24 kDa subunit [Zea mays]
          Length = 281

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           ++    + E      + FS+ +   VNE++S YP +  QS +IPLL  AQ+Q G WV  A
Sbjct: 58  LNYHLDSPENKPDMKWEFSQANMKKVNEILSHYPSNYKQSGIIPLLDLAQQQHGGWVPVA 117

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A I+++A IRV E+ATFYT F  + VG + H+ VCGTTPCM+RG  ++ E     
Sbjct: 118 AMDAIAKIVEVAPIRVYEVATFYTMFNRTKVG-KYHLLVCGTTPCMIRGSREIEETLLEH 176

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEII 169
           +  K     SDG  S  E+EC G CVNAPM+ +            + YEDLTP+R+ EI+
Sbjct: 177 LGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADYSKGSEGYTYNYYEDLTPKRVVEIV 236

Query: 170 DAFSTGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKR 208
           +    G+  T   G Q  +R +  PAGG T+L        
Sbjct: 237 EMLRRGE--TPPRGTQHPERKNCGPAGGNTTLHGEPKPPP 274


>gi|67458955|ref|YP_246579.1| NADH dehydrogenase subunit E [Rickettsia felis URRWXCal2]
 gi|75536607|sp|Q4UM09|NUOE_RICFE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|67004488|gb|AAY61414.1| NADH dehydrogenase I chain E [Rickettsia felis URRWXCal2]
          Length = 167

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     ++I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M Y
Sbjct: 3   TNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPY 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFY+ F L  VG + H+QVC TTPC L G + ++++C  K+  K      D  
Sbjct: 63  MRAYEVATFYSMFNLKRVG-KYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQK 121

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++E++ID +S
Sbjct: 122 FTLSEIECLGACVNAPVVQINDDYYEDLTEEKMEKLIDEYS 162


>gi|21355353|ref|NP_648965.1| CG6485 [Drosophila melanogaster]
 gi|7294004|gb|AAF49361.1| CG6485 [Drosophila melanogaster]
 gi|19528027|gb|AAL90128.1| AT21479p [Drosophila melanogaster]
 gi|220958896|gb|ACL91991.1| CG6485-PA [synthetic construct]
          Length = 238

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F FS+++   V  +++ YP +  + A++PLL  AQ Q+GW+S +A++ VA  + +  + 
Sbjct: 33  KFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPME 92

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
             E A FYT F + P G +  V VC +TPC LRG +++ E C+  ++ +      D   +
Sbjct: 93  AFEAAQFYTMFFMKPRG-KYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQFT 151

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
            +E  C GACVNAP++ +  D YEDL  + L  I+      +      GP+  R +S P 
Sbjct: 152 LKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDK--LPPAGPRNGRFASEPK 209

Query: 195 GGLTSLLDNNSK 206
           GGLT+L      
Sbjct: 210 GGLTTLKIQPPP 221


>gi|190570998|ref|YP_001975356.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019517|ref|ZP_03335323.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357270|emb|CAQ54696.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212994939|gb|EEB55581.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|222825034|dbj|BAH22192.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 166

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 97/161 (60%), Gaps = 1/161 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             FSF+ ++     + I  YP  R  SAV+PLL   QEQ GWV  +A+  VA++L + +I
Sbjct: 6   EQFSFTSDNLRKAKKSIEMYPKGREGSAVMPLLYLVQEQCGWVPESAMRYVADMLHIPHI 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   
Sbjct: 66  RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           + +EVEC GACVNAP+V I  D YE+LTPE++E II   S+
Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIIAELSS 165


>gi|198465895|ref|XP_001353809.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
 gi|198150361|gb|EAL29544.2| GA19629 [Drosophila pseudoobscura pseudoobscura]
          Length = 245

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 7/214 (3%)

Query: 2   SVRR----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           S+RR     A   +    F F++E+   V  +++ YP +  Q A++PLL  AQ Q GW+ 
Sbjct: 26  SMRRRSKLDACNMYDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLP 85

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
            +A+  VA +L +  ++  E A +YT F + P G    V VC +TPC LRG + L++ C 
Sbjct: 86  ISAVVAVAEVLKIDPMQAYETAKYYTMFHMKPRGM-YVVAVCTSTPCFLRGSDDLLKACS 144

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
             +  +P   + D   S +   C GACVN P+V I  D YEDLT   LE I+     G+ 
Sbjct: 145 KMLRLEPGETSKDMQFSLKVDCCLGACVNGPVVTINDDLYEDLTEVSLESILSDLKCGK- 203

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
                GP   R SS P  G T+LL +      K 
Sbjct: 204 -VPPAGPYSGRCSSEPKDGATTLLIDPPPAGYKM 236


>gi|42520577|ref|NP_966492.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410316|gb|AAS14426.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 166

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             FSF+ E+     + I  YP  R  SAV+PLL   QEQ GWVS +A+  VA++L + +I
Sbjct: 6   EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   
Sbjct: 66  RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + +EVEC GACVNAP+V I  D YE+LTPE++E II   S
Sbjct: 125 TLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 164


>gi|117926905|ref|YP_867522.1| NADH-quinone oxidoreductase, E subunit [Magnetococcus sp. MC-1]
 gi|117610661|gb|ABK46116.1| NADH dehydrogenase subunit E [Magnetococcus sp. MC-1]
          Length = 170

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67
           E    +  +FS+E+   V  + +RYP  + QSA++P+L  AQ + G W+SRA+++ VA +
Sbjct: 3   EIAPAAKPAFSQEALKKVETIYNRYPADKRQSALLPVLDLAQREFGGWLSRASMDYVAEL 62

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           + +A IRV E+ATFYT + L PVG + HVQVC    C L G + + E  + ++  +    
Sbjct: 63  MGLAPIRVYEVATFYTMYNLKPVG-KHHVQVCTNISCWLCGSDGIGEAVKQRLEIEYGQT 121

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             DG  +  EVEC GACVNAPM  I  D YE+LTPE   +IID  +
Sbjct: 122 TEDGNFTLSEVECLGACVNAPMFQINDDYYENLTPETAVKIIDELA 167


>gi|239947495|ref|ZP_04699248.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921771|gb|EER21795.1| NADH-quinone oxidoreductase subunit E [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 164

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMA 71
            ++F F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L+M 
Sbjct: 2   NTNFIFDKKNLNLAEEIIKKYPPKGKRSAILPLLDLAQRQNGGWLPVPAIECVANMLEMP 61

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           Y+R  E+ATFYT F L PVG + H+QVC TTPC LRG + ++++C  K+  K      D 
Sbjct: 62  YMRAYEVATFYTMFNLKPVG-KYHIQVCTTTPCWLRGSDHIMKICEKKLGVKLKETTEDQ 120

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             +  E+EC GACVNAP++ I  D YEDLT E++E IID   
Sbjct: 121 KFTLSEIECLGACVNAPVIQINDDYYEDLTQEKMETIIDKLQ 162


>gi|58699915|ref|ZP_00374508.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630491|ref|YP_002727282.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
 gi|58533569|gb|EAL57975.1| NADH dehydrogenase I, E subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592472|gb|ACN95491.1| NADH dehydrogenase I, E subunit [Wolbachia sp. wRi]
          Length = 166

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             FSF+ E+     + I  YP  R  SAV+PLL   QEQ GWVS +A+  VA++L + +I
Sbjct: 6   EQFSFTSENLKKAGKFIEMYPKGREGSAVMPLLYLVQEQCGWVSESAMRYVADMLHIPHI 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+         D   
Sbjct: 66  RVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKLGINIGETTKDNLF 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + +EVEC GAC+NAP+V I  D YE+LTPE++E II   S
Sbjct: 125 TLKEVECLGACINAPVVQINNDFYENLTPEKVENIIAELS 164


>gi|58584851|ref|YP_198424.1| NADH dehydrogenase subunit E [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419167|gb|AAW71182.1| NADH:ubiquinone oxidoreductase chain E [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 166

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             FSF+ E+     + I  YP  +  SAV+PLL   QEQ GWV   A+  VA++L + +I
Sbjct: 6   EQFSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHI 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E+A FYT + L PVG +  ++VC TTPC L   E+++   + K+         D   
Sbjct: 66  RVYEVANFYTMYNLKPVG-KYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLF 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + +EVEC GACVNAP+V I  D YE+LTPE++E II   S
Sbjct: 125 TLKEVECFGACVNAPVVQINNDFYENLTPEKVESIIAELS 164


>gi|313206212|ref|YP_004045389.1| NADH dehydrogenase subunit e [Riemerella anatipestifer DSM 15868]
 gi|312445528|gb|ADQ81883.1| NADH dehydrogenase subunit E [Riemerella anatipestifer DSM 15868]
 gi|315023103|gb|EFT36116.1| NADH-ubiquinone oxidoreductase chain E [Riemerella anatipestifer
           RA-YM]
 gi|325336341|gb|ADZ12615.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Riemerella
           anatipestifer RA-GD]
          Length = 170

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 2/160 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75
           +F  E+   V+++I+RYP  + +SA+IP+L  AQ++ G W+S   ++ VA +L++  I V
Sbjct: 7   AFKPETLEKVHKIIARYPEGKQKSALIPVLHIAQKEFGGWLSVPVMDYVAEVLNILPIEV 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFYT F + PVG +  ++VC T PCML G + +++  R  ++ K      DG  + 
Sbjct: 67  YEVATFYTMFNMKPVG-KYVLEVCRTGPCMLNGSDDILDHIRKTLNIKDGETTEDGLFTL 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           +  EC GAC  APM+ +GK  +E LT E+++EI++    G
Sbjct: 126 KPAECLGACGYAPMMQLGKFYHEHLTKEKVDEILELCRQG 165


>gi|15892404|ref|NP_360118.1| NADH dehydrogenase subunit E [Rickettsia conorii str. Malish 7]
 gi|20139044|sp|Q92ID9|NUOE_RICCN RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|15619555|gb|AAL03019.1| NADH dehydrogenase I chain E [Rickettsia conorii str. Malish 7]
          Length = 167

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT +++ +IID   
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQDKMGKIIDKLQ 165


>gi|157828355|ref|YP_001494597.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933063|ref|YP_001649852.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. Iowa]
 gi|157800836|gb|ABV76089.1| NADH dehydrogenase subunit E [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908150|gb|ABY72446.1| NADH-quinone oxidoreductase chain E [Rickettsia rickettsii str.
           Iowa]
          Length = 167

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC L G + ++++C  K+  K      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLSGSDDIMKICEKKLGVKLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++ EIID   
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQ 165


>gi|255083723|ref|XP_002508436.1| predicted protein [Micromonas sp. RCC299]
 gi|226523713|gb|ACO69694.1| predicted protein [Micromonas sp. RCC299]
          Length = 249

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 18/222 (8%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIE 62
            R   +     S+ F E +   V++++ RYPP+  +SA+IPLL  AQ+  +G++S  A+ 
Sbjct: 7   HRDTPDNNDSLSWDFPEAAMPTVHKILERYPPNYKRSAMIPLLDVAQQANQGYLSVQAMN 66

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA +L++A IRV E+ATFY+ F  + VG + HV VCGTTPCMLRG   + +   + +  
Sbjct: 67  RVAEMLEVAPIRVYEVATFYSMFNRTKVG-KYHVMVCGTTPCMLRGSRDIEKALSDYMGV 125

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
           K      DG  +  E+EC G CVNAPM+ +            + YEDLTP     ++ A 
Sbjct: 126 KKFESTPDGVFTLGEMECMGCCVNAPMIAVADYSNGVEGYSYNYYEDLTPADAVAVVKAL 185

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
             GQ    R G Q  R  + P GG T+L       RG   +D
Sbjct: 186 KAGQ--KPRVGSQ-HRDKAEPMGGQTTLTGEP---RGPYCRD 221


>gi|190891290|ref|YP_001977832.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
 gi|190696569|gb|ACE90654.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           CIAT 652]
          Length = 339

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 126/171 (73%), Positives = 142/171 (83%)

Query: 48  RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
           RAQEQ+GWV+RAAIE +A++LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLR
Sbjct: 2   RAQEQDGWVTRAAIEKIADMLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLR 61

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
           G E L+ VC++KIH  P  RN++GTLSWEEVEC GACVNAPMVMIGKDTYEDLTP RLEE
Sbjct: 62  GSEALMSVCKSKIHAHPFERNAEGTLSWEEVECLGACVNAPMVMIGKDTYEDLTPARLEE 121

Query: 168 IIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           IID F+ G G +I+PG QIDRI SAP GG TSL  +  K R + KK D  S
Sbjct: 122 IIDTFAAGNGASIKPGTQIDRIFSAPEGGPTSLTTDEPKARTRAKKADAES 172


>gi|229586620|ref|YP_002845121.1| NADH dehydrogenase subunit E [Rickettsia africae ESF-5]
 gi|228021670|gb|ACP53378.1| NADH dehydrogenase I chain E [Rickettsia africae ESF-5]
          Length = 167

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + +++VC  K+  +      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMQVCEKKLGVQLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++  IID   
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGGIIDKLQ 165


>gi|256425964|ref|YP_003126617.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
 gi|256040872|gb|ACU64416.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
          Length = 161

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           FSEE    V E+I+RYP  + +SA+IP+L  AQE  G W+S   ++ VA++L +  I V 
Sbjct: 2   FSEEKLNKVKEIIARYPAGKQKSALIPVLHLAQEVSGGWLSSETMDYVASLLQITPIEVY 61

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F L PVG R   +VC T PCMLRG + +I+  + K+         DG  + +
Sbjct: 62  EVATFYSMFNLQPVG-RYVFEVCQTGPCMLRGSDNIIDYIKKKLDIGVGQTTKDGLFTLK 120

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            VEC GAC  APM+ +GK   E LTPE+++ II+   +
Sbjct: 121 TVECLGACGYAPMMQLGKHYREHLTPEKVDAIIEECRS 158


>gi|195125782|ref|XP_002007355.1| GI12897 [Drosophila mojavensis]
 gi|193918964|gb|EDW17831.1| GI12897 [Drosophila mojavensis]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 3/200 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A   ++   F F EE+      +IS YP    + A++PLL  AQ Q GW+   AI+ VA
Sbjct: 34  DACNLYEKLKFEFDEENKKRAEFLISTYPEPERRGALLPLLDLAQRQHGWLPITAIQAVA 93

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V E+A FYT F L P+G    ++VC TTPC LRGC+++   C N +  K  
Sbjct: 94  EMLKLEPFVVWEVANFYTMFNLRPIGM-FRLKVCMTTPCRLRGCDEIWRTCENVLKLKDG 152

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
             + D   +     C GACVN P++ +  D YEDL     E+++    +G       GP+
Sbjct: 153 ETSKDMQFTLTATYCMGACVNGPVIAVNDDLYEDLDVPETEKLLSELKSG--IMPPAGPR 210

Query: 186 IDRISSAPAGGLTSLLDNNS 205
            DR +S P  GLTSLL    
Sbjct: 211 RDRFASEPRSGLTSLLTEPP 230


>gi|34580594|ref|ZP_00142074.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
 gi|28261979|gb|EAA25483.1| NADH dehydrogenase I chain E [Rickettsia sibirica 246]
          Length = 167

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAAEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+  +      D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVQLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++ EIID   
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGEIIDKLQ 165


>gi|238651038|ref|YP_002916895.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
 gi|238625136|gb|ACR47842.1| NADH dehydrogenase subunit E [Rickettsia peacockii str. Rustic]
          Length = 167

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           ++F+F +++     E+I +YPP   +SA++PLL  AQ Q G W+   AIE VAN+L M Y
Sbjct: 6   TNFTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           IR  E+ATFYT F L  VG + H+QVC TTPC LRG + ++++C  K+         D  
Sbjct: 66  IRAYEVATFYTMFNLKRVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLGVTLKETTEDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +  E+EC GACVNAP+V I  D YEDLT E++ +IID F 
Sbjct: 125 FTLSEIECLGACVNAPVVQINDDYYEDLTQEKMGKIIDKFQ 165


>gi|255037831|ref|YP_003088452.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950587|gb|ACT95287.1| NADH-quinone oxidoreductase, E subunit [Dyadobacter fermentans DSM
           18053]
          Length = 165

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 1/163 (0%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P+  +F+ E    V E+I+RYP  R +SA++P+L  AQEQ GW+S   ++ VA IL++ 
Sbjct: 4   SPNLVAFTPERLETVKEIIARYPEGRQKSALLPVLHVAQEQWGWLSSEVMDYVAGILNIE 63

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            + V E+ATFYT + L PVG +  ++ C T PC L G E +    + K+  +     +DG
Sbjct: 64  PVEVYEVATFYTMYHLDPVG-KHVIEYCRTGPCCLMGGEDVYGHLKKKLGIEAGETTADG 122

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             + +EVEC  AC   P+  I +  Y +LT E++++II+  S 
Sbjct: 123 KFTLKEVECLAACGWGPVFQIREQFYMNLTNEKVDQIIEDLSK 165


>gi|145356419|ref|XP_001422429.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582671|gb|ABP00746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 217

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 111/214 (51%), Gaps = 15/214 (7%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
            R   E+     +SF E +   V+E+++RYP +  +SA+IPLL  AQ Q  G +S + + 
Sbjct: 1   HRDTPEDNASLPWSFDEATKPRVDEILARYPTNYKRSAMIPLLDLAQRQNAGHLSLSLMN 60

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
            VA I ++A IRV E+ATFY+ F    +G + HV VCGTTPCMLRG   +       +  
Sbjct: 61  HVAEICEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGARDIERALSEYMGV 119

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDAF 172
           +      DG  +  E+EC G CVNAPM+ +            + YEDLTP+    + +  
Sbjct: 120 EKFETTKDGMFTLGEMECMGCCVNAPMIAVADYRAGVEGYSYNYYEDLTPQSAVRVCEEL 179

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
             G+  + R G Q  R  + P  G T+LL+    
Sbjct: 180 KAGK--SPRVGSQT-RDKAEPLPGQTTLLEPPPG 210


>gi|68171754|ref|ZP_00545102.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88658623|ref|YP_507425.1| NADH dehydrogenase subunit E [Ehrlichia chaffeensis str. Arkansas]
 gi|67998822|gb|EAM85526.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88600080|gb|ABD45549.1| NADH dehydrogenase I, E subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 181

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 2/170 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS  +    E    +F F++++    N+ IS+YP  R  SAV+ LL  AQ+Q G ++  +
Sbjct: 1   MSNIQKNSNEHYTETFKFNKDNLKQANDTISKYPHDRKSSAVMDLLHIAQKQCGGFIPLS 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +A+ L M  I V E+A FY+ + LSP G +  +QVC TTPC L G + +++ C+  
Sbjct: 61  AMNYIADFLGMRLIHVYEVAKFYSMYNLSPTG-KYLIQVCRTTPCWLCGSDDILKSCKEL 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           ++       SD   + +EVEC GACVNAP++ I  D YE LTP+++++I+
Sbjct: 120 LNICVGETTSDNLFTLKEVECLGACVNAPVMQINDDYYEKLTPDKVKDIL 169


>gi|300775176|ref|ZP_07085038.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
 gi|300505916|gb|EFK37052.1| NADH-quinone oxidoreductase subunit E [Chryseobacterium gleum ATCC
           35910]
          Length = 169

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
            + +F  ES   V+++I+RYP  R +SA++P+L  AQ++ G W+    ++ VA +L +  
Sbjct: 3   ETIAFKPESLAQVHKIIARYPEGRQKSALLPVLHLAQKEFGGWLDVPVMDYVAGLLSIKP 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFYT F + PVG +  ++VC T PCM+ G EK+++  R K++ K      DG 
Sbjct: 63  IEVYEVATFYTMFNMKPVG-KYVLEVCRTGPCMVCGSEKILDHIRTKLNIKDGETTEDGM 121

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            + +  EC GAC  APM+ +GK  +E+LT E+++EI+D    GQ
Sbjct: 122 FTLKPAECLGACGYAPMMQLGKFFHENLTIEKVDEILDLCRQGQ 165


>gi|292493664|ref|YP_003529103.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
 gi|291582259|gb|ADE16716.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
          Length = 176

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S E    ++  I++YP  + QSAVIP L   Q   G +++   ++ VA  L M  I V E
Sbjct: 22  SAEVRQQIDHWIAKYPQEQKQSAVIPALHIVQAANGGYLTNELLDEVAEYLQMPPISVYE 81

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+ F+L PVG R  + VC    C L G ++++   R ++         D   + +E
Sbjct: 82  VATFYSMFELKPVG-RHKLSVCTNISCQLCGSDQVVAHLRKRLGIGFGETTPDRRFTIKE 140

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           VEC GAC  APM+M+G+  +E+LTPE++++I++A  
Sbjct: 141 VECLGACGGAPMMMVGQTYHENLTPEKIDQILEALK 176


>gi|157803907|ref|YP_001492456.1| NADH dehydrogenase subunit E [Rickettsia canadensis str. McKiel]
 gi|157785170|gb|ABV73671.1| NADH dehydrogenase I chain E [Rickettsia canadensis str. McKiel]
          Length = 167

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
           +SF F +++     +++ +YPP   +SA++PLL  AQ Q G W+S  AIE VAN+L +AY
Sbjct: 6   TSFIFDKKNLNLAEDIVKKYPPHGKRSAILPLLDLAQRQNGGWLSIPAIEYVANMLGIAY 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +R  E+ATFYT F L P+G + H++VC TTPC LRG   +I+ C  K+  K      D  
Sbjct: 66  MRAYEVATFYTMFNLKPIG-KHHIKVCTTTPCWLRGSSDIIKTCEQKLGIKEQEVTKDQK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S  E+EC GACVNAP+V I  D YEDLT E++E I+D   
Sbjct: 125 FSLIEIECLGACVNAPVVQINDDYYEDLTQEKMENILDKLQ 165


>gi|330813986|ref|YP_004358225.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487081|gb|AEA81486.1| NADH-ubiquinone oxidoreductase chain E [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 199

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/204 (43%), Positives = 126/204 (61%), Gaps = 6/204 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRA 59
           MS + +A++  QP SF FS E+    + ++ +YP  R +SAV+PLL  AQ+Q  GW+S A
Sbjct: 1   MSGKHVAKD--QPKSFIFSSENLKTKDIILKKYPEVRKKSAVMPLLNLAQKQNDGWISLA 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A++ +A++L++ YI+V E+ATFYT + L+PVG +  VQVC TTPC +RG  K++E C+  
Sbjct: 59  AVQYIADLLEVPYIKVYEVATFYTMYNLAPVG-KYFVQVCTTTPCAIRGSGKIVEACKKY 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           I     H + D   SW EVEC GACVNAPM+ I +D YEDL     E+I  +F     + 
Sbjct: 118 ISSNEGHLSEDKKSSWIEVECLGACVNAPMIQINEDYYEDLDAISAEKIFKSFKD--DNL 175

Query: 180 IRPGPQIDRISSAPAGGLTSLLDN 203
            + G Q  R  S P     +LL N
Sbjct: 176 PKLGSQKGRKGSEPIKQRLTLLKN 199


>gi|51473547|ref|YP_067304.1| NADH dehydrogenase subunit E [Rickettsia typhi str. Wilmington]
 gi|81390153|sp|Q68X20|NUOE_RICTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|51459859|gb|AAU03822.1| NADH dehydrogenase (ubiquinone) subunit E [Rickettsia typhi str.
           Wilmington]
          Length = 170

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           +F+F +++      +I +YPP+  +SA++PLL  AQ Q G W+  +AIE VAN+L+M Y+
Sbjct: 9   TFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYM 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R  E+ATFY+ F LSPVG + H+QVC TTPC LRG + ++++C  K+  K      D   
Sbjct: 69  RAYEVATFYSMFNLSPVG-KYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQKF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  E+EC GACVNAP+V I  D YEDL   ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166


>gi|308814238|ref|XP_003084424.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116056309|emb|CAL56692.1| putative NADH-ubiquinone oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 265

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 18/223 (8%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAI 61
           V R   E+    +++F       V+ ++ RYP +  +SA+IPLL  AQ+Q  G ++ A +
Sbjct: 26  VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A++L++A IRV E+ATFY+ F    +G + HV VCGTTPCMLRG  ++ +     + 
Sbjct: 86  NHIADVLEVAPIRVYEVATFYSMFNRQKMG-KLHVMVCGTTPCMLRGSREIEKALEEWMG 144

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIIDA 171
            K     + GT +  E+EC G CVNAPM+ +            + YEDLTP+   ++ +A
Sbjct: 145 VKKFETTACGTFTLGEMECMGCCVNAPMIAVADYRNGVEGYSYNYYEDLTPQTAVKVCEA 204

Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
              G+  + R G QI R  + P  GLT+L  + S   G   +D
Sbjct: 205 LKAGK--SPRVGSQI-RDKAEPIKGLTTLTGDPS---GPFSRD 241


>gi|332662317|ref|YP_004445105.1| NADH-quinone oxidoreductase subunit E [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331131|gb|AEE48232.1| NADH-quinone oxidoreductase, E subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 169

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 1/163 (0%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            + ++ +FS E    V  ++ RYP  + +SA++P+L  AQ+  GW+S   ++ VA +LD+
Sbjct: 2   IETTNITFSPERLAEVQTLLKRYPEGKQKSAILPILHLAQKDFGWISVEVMDYVAELLDI 61

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
            +I V E+ATFYT F L PVG +  ++VC T PCML G + +++    K+  +      D
Sbjct: 62  QHIEVYEVATFYTMFHLKPVG-KNVLEVCRTGPCMLVGSDNIVKYLEQKLSIQDGETTPD 120

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G  + + VEC GAC   PM+ +G+  +E L+ ER++++++ F 
Sbjct: 121 GLFTIKTVECLGACGYGPMMQVGEKYHEFLSEERIDQLLEGFR 163


>gi|148259936|ref|YP_001234063.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
 gi|326403110|ref|YP_004283191.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|146401617|gb|ABQ30144.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
 gi|325049971|dbj|BAJ80309.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
          Length = 203

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/200 (42%), Positives = 108/200 (54%), Gaps = 15/200 (7%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ------EGWVSRAAIEVVANIL 68
           +FSF E S   +  +I++YP  R  SAV+PLL  AQ Q        WV R A++V+A  L
Sbjct: 8   AFSFDETSEALIPSIIAKYPEGRQASAVMPLLDLAQRQMARQTGHAWVPRTAMDVIAARL 67

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            M  +RV E+ATFYT F   PVG + H+QVC TTPC LRG ++++  CR           
Sbjct: 68  SMPPMRVYEVATFYTMFHTKPVG-KFHLQVCTTTPCWLRGSDEVMSACRKAAEAD-GET- 124

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
                S EEVEC G CVNAP+V +  D YEDL   R E +++    G  D    G  I R
Sbjct: 125 ----FSIEEVECLGCCVNAPVVQVNDDVYEDLDGPRTEALLERLRAG--DVPPAGSTIGR 178

Query: 189 ISSAPAGGLTSLLDNNSKKR 208
            +SAP GG T+L      K 
Sbjct: 179 QASAPEGGPTTLFGVGGTKP 198


>gi|225704226|gb|ACO07959.1| NADH dehydrogenase flavoprotein 2, mitochondrial precursor
           [Oncorhynchus mykiss]
          Length = 205

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 43/215 (20%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   +    + F F+ ++                                      
Sbjct: 33  IFVHRDTPDNNPDTPFEFTVDNLK------------------------------------ 56

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
              VA +L++  +R+ E+ATFYT F   PVG + H+Q+C TTPCML   + ++E  +NK+
Sbjct: 57  ---VAEVLEVPPMRIYEVATFYTMFLRQPVG-KYHIQICTTTPCMLCDSDSILEALQNKL 112

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K     +D   S  EVEC GACVNAPMV I  + YEDL+P+ +++IID    GQ    
Sbjct: 113 GIKVGGMTADKMFSLIEVECLGACVNAPMVQINDNYYEDLSPKDIDQIIDELKAGQ--VP 170

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
            PGP+  R S  PAGGLTSL +      G   + D
Sbjct: 171 PPGPRNGRFSCEPAGGLTSLSE-PPPGPGFGVRAD 204


>gi|255535799|ref|YP_003096170.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
 gi|255341995|gb|ACU08108.1| NADH-ubiquinone oxidoreductase chain E [Flavobacteriaceae bacterium
           3519-10]
          Length = 169

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAY 72
            + +F  E+   V ++I RYP  + +SA+IP+L  AQ++ G W+    ++ VA++L +  
Sbjct: 3   ETIAFQPETLKQVQKIIGRYPEGKQKSALIPVLHLAQKEFGGWLDVPVMDYVADVLSIKP 62

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFYT F + PVG +  ++VC T PCML G + +++  R  ++ K     +DG 
Sbjct: 63  IEVYEVATFYTMFNMKPVG-KYVLEVCQTGPCMLSGSDGILQHIRETLNIKNGETTADGL 121

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            + ++ EC GAC  APM+ +GK  +E LT E+++EI+     G
Sbjct: 122 FTLKQAECLGACGYAPMMQLGKFYHEHLTNEKVDEILQLCRQG 164


>gi|15604221|ref|NP_220737.1| NADH dehydrogenase subunit E [Rickettsia prowazekii str. Madrid E]
 gi|6647681|sp|Q9ZDH5|NUOE_RICPR RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|3860913|emb|CAA14813.1| NADH DEHYDROGENASE I CHAIN E (nuoE) [Rickettsia prowazekii]
 gi|292571962|gb|ADE29877.1| NADH dehydrogenase I chain E [Rickettsia prowazekii Rp22]
          Length = 177

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
           +F+F +++      +I +YPP   +SA++PLL  AQ Q G W+  +AIE VAN+L+M Y+
Sbjct: 9   TFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYM 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R  E+ATFYT F L+P+G + H+QVC TTPC LRG + ++++C  K+  K      D   
Sbjct: 69  RAYEVATFYTMFNLNPIG-KYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQKF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  E+EC GACVNAP+V I  D YEDL   ++E++I+ +
Sbjct: 128 TLSEIECLGACVNAPVVQINDDYYEDLNEAKMEKLIEQY 166


>gi|74198839|dbj|BAE30647.1| unnamed protein product [Mus musculus]
 gi|74219516|dbj|BAE29530.1| unnamed protein product [Mus musculus]
          Length = 152

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/155 (44%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 1   MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +EEIID    G+    
Sbjct: 60  GIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGK--VP 117

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R    PAGGLTSL +   K  G   +  
Sbjct: 118 KPGPRSGRFCCEPAGGLTSLTE-PPKGPGFGVQAG 151


>gi|322490122|emb|CBZ25383.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 269

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 15/226 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
               + +     + F+  S   + NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+
Sbjct: 40  HLNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  + V E  TFY+ F   PVG + H+Q C TTPCML G ++L+E   + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            +     SDG ++  E+EC GACVNAPM+++           D  EDLT E ++ +++  
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
            +G+    + GPQ  DR  + PAGG TSLL         +  D+K+
Sbjct: 219 RSGK--PFKIGPQRPDRKYAEPAGGRTSLLFKEPPGPYCRDLDEKV 262


>gi|154335106|ref|XP_001563793.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134060822|emb|CAM37838.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 274

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 15/225 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
               + +     + F+  S   ++ E++ ++P  R  SA IPLL  AQ+Q+G ++   A+
Sbjct: 40  HHNTDYDNTRIPWDFTTASYEKIHHEILPKFPRGRRMSATIPLLHLAQQQQGGYIPVTAM 99

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  + V E  TFY+ F   PVG + H+Q C TTPCML G ++LIE   + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELIERTMHYLN 158

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            +     SDG ++  E+EC GACVNAPM+++           D  EDLT + ++ +++  
Sbjct: 159 VRMHGTTSDGLITVGEMECLGACVNAPMLVVSDYSNPPNFSYDYVEDLTWDSIKTLVEDL 218

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             G+    + GPQ  DR  + PAGG TSLL         +  D K
Sbjct: 219 RGGK--PFKIGPQRPDRRCAEPAGGRTSLLFKEPPGPYCRDFDAK 261


>gi|325954438|ref|YP_004238098.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
 gi|323437056|gb|ADX67520.1| NADH-quinone oxidoreductase, E subunit [Weeksella virosa DSM 16922]
          Length = 163

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 102/159 (64%), Gaps = 2/159 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRV 75
            FSE +   +N++++RYP  + +SA+IP+L  AQE+ G W+    ++ VA +LD+  + V
Sbjct: 4   QFSEATQQRINQIVARYPEGKQKSALIPVLHIAQEEFGGWLDVPHLDYVAKVLDLLPVEV 63

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A+FYT FQL+PVG +  +QVC T PCM++G + +I+  +NK++        DG  + 
Sbjct: 64  YEVASFYTMFQLNPVG-KYVLQVCQTGPCMIKGADHIIQHIKNKLNIDIGGTTEDGLFTL 122

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           + VEC GAC  APM+ +GK   E LT E+++E+I+    
Sbjct: 123 QTVECLGACGYAPMMQLGKTYREFLTTEKVDELIEELKK 161


>gi|270158110|ref|ZP_06186767.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|289163625|ref|YP_003453763.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
 gi|269990135|gb|EEZ96389.1| NADH-quinone oxidoreductase E subunit [Legionella longbeachae
           D-4968]
 gi|288856798|emb|CBJ10609.1| NADH dehydrogenase I chain E [Legionella longbeachae NSW150]
          Length = 167

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ G+++   ++ +A+ LDM  I V E+
Sbjct: 14  SAERIKEIDHWIAKYPMEQKQSAVMSALRIAQEEHGYLTNELMDAIADYLDMPPIAVYEV 73

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           A+FYT ++   VG R  + VC    CML     +++    K+  K      DG  +   V
Sbjct: 74  ASFYTMYEHKQVG-RHLINVCTNISCMLCDSAAVVKHLEKKLDIKLGETTDDGRFTLRAV 132

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           EC GACVNAPM+ + KD +E LTPE ++++++ + 
Sbjct: 133 ECLGACVNAPMMQVNKDYHEKLTPESIDKVLEQYQ 167


>gi|72163090|ref|YP_290747.1| NADH dehydrogenase subunit E [Thermobifida fusca YX]
 gi|71916822|gb|AAZ56724.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermobifida fusca
           YX]
          Length = 239

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 7   AEEEFQPSSFSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
              +  P    FS E+   +     E+ISRYP +R  SA++PLL   Q +EG+VS   I 
Sbjct: 3   TPPKPNPI---FSGENRARLELDAKEIISRYPKAR--SALLPLLHLVQSEEGYVSNDGIA 57

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A  L +    V  +ATFYT ++  PVG   HV VC    C + G +++    +  +  
Sbjct: 58  FCAEQLGLTTAEVTAVATFYTMYKRRPVGE-YHVGVCTNPLCAVMGGDEIYSALKEHLGV 116

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           +      DG +S E VEC  AC  AP+VMI  + +++ TPE +++I+D    G+      
Sbjct: 117 ENDGVTEDGKISLEHVECNAACDFAPVVMINWEFFDNQTPESMKKIVDDLRLGKDVKPTR 176

Query: 183 GPQI----------------DRISSAPAGGLTSL 200
           GP                   R +  P  G  SL
Sbjct: 177 GPNRLCTWKQASRVLAGFDDGRATEGPQAGEPSL 210


>gi|73667051|ref|YP_303067.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
 gi|72394192|gb|AAZ68469.1| NADH dehydrogenase subunit E [Ehrlichia canis str. Jake]
          Length = 180

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 2/180 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS  +          F FS+E+     + I++YP  R  SAV+ LL  AQ+Q G ++  +
Sbjct: 1   MSSTQKNSNTNYIGEFKFSKENLKHAKDTINKYPQDRKSSAVMALLHIAQKQCGGFIPSS 60

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A+ L M  I V E+A FY+ + LS  G +  VQVC TTPC L G + +++ C+  
Sbjct: 61  AINYIADFLGMQLIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDDVLKSCKEL 119

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           ++       SD   + +EVEC GACVNAP+V I  D YE LTP+++++I+      +  T
Sbjct: 120 LNIGIGETTSDNLFTLKEVECLGACVNAPVVQINDDYYEKLTPDKMKDILLEIQKKENLT 179


>gi|312131898|ref|YP_003999238.1| NADH dehydrogenase subunit e [Leadbetterella byssophila DSM 17132]
 gi|311908444|gb|ADQ18885.1| NADH dehydrogenase subunit E [Leadbetterella byssophila DSM 17132]
          Length = 161

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            + +F+E++     E+I+RYP  R +SA++PLL  AQEQ GWVS A ++ +A IL +  +
Sbjct: 2   ENIAFTEDNWAKAQEIIARYPEGRQKSALLPLLHLAQEQHGWVSPAVMDYIAEILKIQPV 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFYT F L PVG +  ++ C T PC   G E++ +  + ++        SDG  
Sbjct: 62  EVYEVATFYTMFHLEPVG-KHVIEYCRTGPCCTVGGEEVYDHLKERLGIASNQTTSDGLF 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           + +EVEC  AC   P   I +  +  L   ++++IID  S 
Sbjct: 121 TLKEVECLAACGWGPCFQIKEKFFMQLDKAKVDQIIDELSK 161


>gi|317051067|ref|YP_004112183.1| NADH-quinone oxidoreductase subunit E [Desulfurispirillum indicum
           S5]
 gi|316946151|gb|ADU65627.1| NADH-quinone oxidoreductase, E subunit [Desulfurispirillum indicum
           S5]
          Length = 161

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
              F+F+EE+     E++ RYP    +S  +P L  AQ QEGWVS+ A+E +A  L++  
Sbjct: 4   DKPFAFNEETERQFQELLKRYPI--KKSLNLPCLWMAQRQEGWVSQEAMEYIAQRLEIPV 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V E+ATFYT + L PVG + H+Q+C T  C LRG E+++     KI   P H  +DG 
Sbjct: 62  TDVYEVATFYTMYNLHPVG-KYHIQLCRTLSCDLRGKEEILRHIVGKIGITPGHTTADGR 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S  +VEC G+C + PM+ +  D +E+LTP+R+++I+D  
Sbjct: 121 FSLVQVECLGSCGSGPMMQLNDDYHENLTPQRVDQILDQL 160


>gi|296268277|ref|YP_003650909.1| NADH-quinone oxidoreductase subunit E [Thermobispora bispora DSM
           43833]
 gi|296091064|gb|ADG87016.1| NADH-quinone oxidoreductase, E subunit [Thermobispora bispora DSM
           43833]
          Length = 231

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 19/197 (9%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E       E+I+RYP  R  SA++PLL   Q ++G++S    E  A  L +    VL +A
Sbjct: 9   ERLEREAKEIIARYPKPR--SALLPLLHLVQSEDGYISDDGAEFCAEQLGLTKAEVLGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFYT ++  P G   +V VC  T C + G +++ E     +         DG ++ E +E
Sbjct: 67  TFYTMYKREPAGE-YNVGVCINTLCAVMGGDQIWETLTEHLGIGHNETTPDGKITLERLE 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------------- 186
           C  AC  AP+V++  + +++ TPE  + ++D    G+G T   GP+              
Sbjct: 126 CNAACDYAPVVVVNWEFFDNQTPESAKRLVDDLRAGKGATPTRGPKRLCTFKEASRILAG 185

Query: 187 ---DRISSAPAGGLTSL 200
               R    P+ G  SL
Sbjct: 186 FPDGRAGEGPSAGEASL 202


>gi|300771673|ref|ZP_07081548.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761662|gb|EFK58483.1| NADH-quinone oxidoreductase subunit E [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 171

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +E QP    FS E      EV+SRYP  + +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           + LD+  I V E+ATFYT + L P G +  ++VC T PC L G EK++    N++  K  
Sbjct: 60  HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMTHIENRLGVKEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
               DG  SW  VEC  AC   P++ IG D   YE+LT E ++++I+    
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPDYTFYENLTEESVDKLINELKE 169


>gi|254496125|ref|ZP_05109024.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
 gi|254354666|gb|EET13302.1| NADH dehydrogenase I, E subunit [Legionella drancourtii LLAP12]
          Length = 167

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S +    ++  I++YP  + QSAV+  L   QE+   ++   ++ +A+ L+M  I V E+
Sbjct: 14  SAQRMQDIDHWIAKYPADQKQSAVMSALRIVQEEHNHLTMELMDAIADYLEMPPIAVYEV 73

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           A+FYT ++  PVGT   V VC    CMLR    +++  + K+  K      DG  +   V
Sbjct: 74  ASFYTMYEHKPVGT-HLVNVCTNISCMLRDSAGVVDHLQKKLGIKLGETTDDGRFTLRSV 132

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           EC GACVNAPM+ + KD +E+LTPE ++++++ + 
Sbjct: 133 ECLGACVNAPMMQVDKDYHENLTPESIDKVLEQYQ 167


>gi|227535967|ref|ZP_03966016.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244210|gb|EEI94225.1| NADH dehydrogenase (ubiquinone) subunit E [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 171

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +E QP    FS E      EV+SRYP  + +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LSVKESQPV--EFSAELLQKFGEVVSRYPEGKQKSALLPVLHLVQAEFGWLSVDAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           + LD+  I V E+ATFYT + L P G +  ++VC T PC L G EK+++   N++  K  
Sbjct: 60  HYLDIQPIEVYEVATFYTMYFLEPKG-KYVLEVCRTGPCCLVGAEKIMDHIENRLGVKEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
               DG  SW  VEC  AC   P++ IG +   YE+LT E ++++I+    
Sbjct: 119 EVTPDGLFSWRGVECVAACGFGPVLQIGPEYTFYENLTVESVDQLINELKE 169


>gi|58617181|ref|YP_196380.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str. Gardel]
 gi|58416793|emb|CAI27906.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Gardel]
          Length = 183

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
           ++++     +    F F++ES    N+ ++RYP  R  SAV+PLL  AQ+Q G  +  AA
Sbjct: 4   NIQKNCNTRYDTGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A+ LDM  I V E+A FY+ + LS  G +  VQVC TTPC L G + +++ C+  +
Sbjct: 64  MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSDNVLKACKEFL 122

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +    +   D   + +EVEC GACVNAP+V I  D YE L  ++++ I+  +   +
Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILMEYKKKE 178


>gi|72391928|ref|XP_846258.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
           TREU927]
 gi|62359878|gb|AAX80305.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei]
 gi|70802794|gb|AAZ12699.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
 gi|261329869|emb|CBH12852.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 273

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 13/224 (5%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNE-VISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
               +       + F+  S   +N  ++ ++P SR +SA+IPLL  AQ Q+G ++   A+
Sbjct: 38  HHNTDTNNTRIPWDFTMASYEEINNVILPKFPRSRRRSAIIPLLHLAQRQQGGYIPVTAM 97

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L+      ++
Sbjct: 98  YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 156

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            K      DG ++  E++C GACVNAPM+++           D  EDLT + ++E+I+  
Sbjct: 157 VKMHGTTRDGLITLGEMQCLGACVNAPMLVVSDYSRPPHFSYDFVEDLTWDSVKELIENL 216

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             G+   +    + DR  S PAGG TS+      K   +  D K
Sbjct: 217 REGRPFKVGTC-REDRRWSEPAGGRTSIFMKEPPKPYCRDLDAK 259


>gi|322498104|emb|CBZ33179.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 273

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  + +     + F+  S   + NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+
Sbjct: 40  HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  + V E  TFY+ F   PVG + H+Q C TTPCML G ++L+E   + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            +     SDG ++  E+EC GACVNAPM+++           D  EDLT E ++ ++++ 
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVESL 218

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             G+    + G Q  DR  + PAGG TSLL         +  D +
Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261


>gi|146083233|ref|XP_001464685.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum
           JPCM5]
 gi|134068779|emb|CAM59713.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
          Length = 273

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 15/225 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  + +     + F+  S   + NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+
Sbjct: 40  HQNTDYDNTRIPWDFTTASYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  + V E  TFY+ F   PVG + H+Q C TTPCML G ++L+E   + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            +     SDG ++  E+EC GACVNAPM+++           D  EDLT E ++ +++  
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             G+    + G Q  DR  + PAGG TSLL         +  D +
Sbjct: 219 RGGK--PFKIGSQRPDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261


>gi|254491915|ref|ZP_05105094.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463393|gb|EEF79663.1| NADH-quinone oxidoreductase, E subunit subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 170

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMA 71
           P    F+E     ++  I++YP  + QSAVIP L   Q   EGW++ A ++ +A+ L + 
Sbjct: 9   PKEGLFTETLREQMDTWIAKYPAGQAQSAVIPCLHILQAANEGWLTTAIMDALASYLSIP 68

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
            I V E+ATFYT F+LSPVG +  + VC    CML G EK+++    K++ KP     DG
Sbjct: 69  AISVYEVATFYTMFELSPVG-KHKISVCTNISCMLCGSEKVMQHIEQKLNIKPGQTTEDG 127

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             + +EVEC GACV APM+++ K  +E LT +++++I+D  ++
Sbjct: 128 LFTLKEVECLGACVGAPMMLVDKQYHEFLTEDKIDDILDRLNS 170


>gi|57239171|ref|YP_180307.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579127|ref|YP_197339.1| NADH dehydrogenase subunit E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161250|emb|CAH58169.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417753|emb|CAI26957.1| NADH-quinone oxidoreductase chain E [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 183

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAA 60
           ++++     +    F F++ES    N+ ++RYP  R  SAV+PLL  AQ+Q G  +  AA
Sbjct: 4   NIQKNCNTRYDIGEFKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAA 63

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A+ LDM  I V E+A FY+ + LS  G +  VQVC TTPC L G E +++ C+  +
Sbjct: 64  MNYIADFLDMKPIHVYEVAKFYSMYNLSVTG-KYLVQVCRTTPCWLCGSENVLKACKEFL 122

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +    +   D   + +EVEC GACVNAP+V I  D YE L  ++++ I+  +   +
Sbjct: 123 NIDVGNTTDDNLFTLKEVECLGACVNAPVVQINDDYYEKLNADKIKNILIEYKKKE 178


>gi|307611654|emb|CBX01345.1| NADH dehydrogenase I chain E [Legionella pneumophila 130b]
          Length = 167

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           NAPM+ + KD +E+LT E ++++++ + 
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167


>gi|157867454|ref|XP_001682281.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major
           strain Friedlin]
 gi|68125734|emb|CAJ03471.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
          Length = 273

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 15/225 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  + +     + F+  S   + NE++ ++P  R  SA IPLL  AQ+Q+G ++   A+
Sbjct: 40  HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  + V E  TFY+ F   PVG + H+Q C TTPCML G ++L+E   + ++
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVG-KYHIQFCRTTPCMLCGADELMERTMHYLN 158

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            +     SDG ++  E+EC GACVNAPM+++           D  EDLT E ++ +++  
Sbjct: 159 VRMHGTTSDGLITIGEMECLGACVNAPMLVVSDYSNPPNFSYDYMEDLTWESIKTLVENL 218

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
             G+    + G Q +DR  + PAGG TSLL         +  D +
Sbjct: 219 RGGK--PFKIGSQRLDRRYAEPAGGRTSLLFKEPPGPYCRDFDAE 261


>gi|148361098|ref|YP_001252305.1| NADH dehydrogenase I subunit E [Legionella pneumophila str. Corby]
 gi|296108428|ref|YP_003620129.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
 gi|148282871|gb|ABQ56959.1| NADH dehydrogenase I, E subunit [Legionella pneumophila str. Corby]
 gi|295650330|gb|ADG26177.1| NADH dehydrogenase I chain E [Legionella pneumophila 2300/99 Alcoy]
          Length = 167

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           NAPM+ + KD +E+LT E ++++++ + 
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167


>gi|115618122|ref|XP_797683.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
 gi|115950060|ref|XP_001178877.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           2 [Strongylocentrotus purpuratus]
          Length = 152

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 4/155 (2%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL M  +RV E+ATFYT F  +PVG + H+Q+C TTPCMLR  + ++EV   K+
Sbjct: 1   MNKVADILKMPKMRVYEVATFYTMFNRNPVG-KYHIQICTTTPCMLRDSDSILEVLTRKL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             K      D   +  EVEC GACVNAPMV I  + YEDL  + +EEIID    G+  T 
Sbjct: 60  GIKVGETTKDNMFTLAEVECLGACVNAPMVQINDNYYEDLAVKDMEEIIDDLKAGR--TP 117

Query: 181 RPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +PGP+  R +S P GGLTSL+D      G   +DD
Sbjct: 118 KPGPRNARFASEPEGGLTSLID-PPTGPGFGVRDD 151


>gi|312890392|ref|ZP_07749929.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
 gi|311297162|gb|EFQ74294.1| NADH dehydrogenase subunit E [Mucilaginibacter paludis DSM 18603]
          Length = 174

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 4/171 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  E+ Q +S  FSE+     N+V+SRYP  + +S ++P+L   Q + GWVS  A++ VA
Sbjct: 2   LRVEDTQ-TSVEFSEDLIAKFNDVVSRYPEGKQKSGLLPILHLVQAEFGWVSPVAMDKVA 60

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L + +I V E+A+FY+ + L P G +  ++VC T PC L G EK+++    K+  K  
Sbjct: 61  EYLGIQHIEVYEVASFYSMYLLRPQG-KYLLEVCRTGPCCLVGAEKIMDYIEQKLGVKEG 119

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
               DG  SW  VEC  AC  AP++ IG +   YE+LTPE++++++   + 
Sbjct: 120 EVTPDGLFSWRGVECLAACGFAPVLQIGPEYTFYENLTPEKVDKLVADLTA 170


>gi|297563971|ref|YP_003682944.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848420|gb|ADH70438.1| NADH-quinone oxidoreductase, E subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 248

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 7/174 (4%)

Query: 17  SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           +F+ E    +     E+I RYP  R +SA++PLL   Q +EG VS+A +   A+ L +  
Sbjct: 18  AFTAEVTARLEPEAKEIIGRYP--RPRSALLPLLHLVQAEEGHVSKAGMRFCADQLGITL 75

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT ++  P G    V VC  T C + G +++ +  ++ +         DG 
Sbjct: 76  AEVNAVATFYTMYRRRPGGD-YQVGVCTNTLCAVMGGDEIFQTLKDHLGVGNNETTEDGK 134

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           ++ E VEC  AC  AP+VM+  + +++ TP+  + ++D    G+      GP  
Sbjct: 135 VTLEHVECNAACDFAPVVMVNWEFFDNQTPDTAKRLVDDLRLGRDVAPTRGPAS 188


>gi|153872952|ref|ZP_02001700.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
 gi|152070587|gb|EDN68305.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Beggiatoa sp. PS]
          Length = 171

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 6/173 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           MS R         +S   SEES   ++  I++YP  + QS V+  L   Q+  G W++  
Sbjct: 1   MSTR----MSKPNASTLLSEESRAAIDRWIAKYPSDQKQSTVMAALSIVQDANGGWLTTE 56

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            ++ VA+ LDM  I V E+ATFY+ ++L PVG    + +C    CMLRG E ++     K
Sbjct: 57  LMDAVADYLDMQPIAVYEVATFYSMYELKPVGQ-NKLCICTNVSCMLRGSEDIVAHLEQK 115

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  K      D   + +EVEC GAC  APM+ +G++ +E+LT E++++I+   
Sbjct: 116 LGIKLGETTPDKKFTLKEVECLGACGGAPMMQVGREYHENLTSEKVDDILTKL 168


>gi|52842983|ref|YP_096782.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630094|gb|AAU28835.1| NADH dehydrogenase I, E subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 167

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 21  IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 81  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           NAPM+ + KD +E+LT E ++++++ + 
Sbjct: 140 NAPMMQVDKDYHENLTAESIDKVLEQYQ 167


>gi|161831261|ref|YP_001597289.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           331]
 gi|161763128|gb|ABX78770.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           331]
          Length = 174

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
             Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L
Sbjct: 2   NEQTEQFILDEAVIKEIDRWLAKYPADQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +  I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        
Sbjct: 62  QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           SDG  + + VEC  AC  APM  I   + +E+LTPE++  IID    
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167


>gi|153207217|ref|ZP_01945981.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706802|ref|YP_001423960.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165918775|ref|ZP_02218861.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           334]
 gi|212212186|ref|YP_002303122.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212218216|ref|YP_002305003.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
 gi|120576705|gb|EAX33329.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154356088|gb|ABS77550.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii Dugway
           5J108-111]
 gi|165917499|gb|EDR36103.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           334]
 gi|212010596|gb|ACJ17977.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuG_Q212]
 gi|212012478|gb|ACJ19858.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii CbuK_Q154]
          Length = 174

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
             Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L
Sbjct: 2   NEQTEQFILDEAVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +  I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        
Sbjct: 62  QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           SDG  + + VEC  AC  APM  I   + +E+LTPE++  IID    
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167


>gi|322828601|gb|EFZ32337.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 257

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  +       + FS  S   +N  ++ ++P SR +SAVIPLL  AQ Q+G ++   A+
Sbjct: 24  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 83

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L+      ++
Sbjct: 84  YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 142

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            K      DG ++  E+EC GACVNAPM+++           D  EDLT + ++++I+  
Sbjct: 143 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 202

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211
             G+    + G Q  DR  + PAGG TS+          +
Sbjct: 203 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 240


>gi|71409466|ref|XP_807078.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70870995|gb|EAN85227.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 15/220 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  +       + FS  S   +N  ++ ++P SR +SAVIPLL  AQ Q+G ++   A+
Sbjct: 28  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L+      ++
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVHRTEAYLN 146

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            K      DG ++  E+EC GACVNAPM+++           D  EDLT + ++++I+  
Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211
             G+    + G Q  DR  + PAGG TS+          +
Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 244


>gi|71655425|ref|XP_816297.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70881414|gb|EAN94446.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 261

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 15/220 (6%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAI 61
            +  +       + FS  S   +N  ++ ++P SR +SAVIPLL  AQ Q+G ++   A+
Sbjct: 28  HQNTDTNNTRIPWDFSIASYEEINNAILPKFPRSRRRSAVIPLLHLAQRQQGGYIPVTAM 87

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A I ++  ++V E  TFY+ F   PVG + H+Q C TTPCML GC++L++     ++
Sbjct: 88  YKIARICEVPPMQVFETVTFYSMFNRQPVG-KYHIQFCVTTPCMLCGCDELVQRTEAYLN 146

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK---------DTYEDLTPERLEEIIDAF 172
            K      DG ++  E+EC GACVNAPM+++           D  EDLT + ++++I+  
Sbjct: 147 VKMHGTTKDGLITLGEMECLGACVNAPMLVVSDYSRPPNFSYDFVEDLTWDAVKQLIENL 206

Query: 173 STGQGDTIRPGPQ-IDRISSAPAGGLTSLLDNNSKKRGKK 211
             G+    + G Q  DR  + PAGG TS+          +
Sbjct: 207 REGR--PFKVGTQRSDRKWADPAGGRTSIFLKEPPMPYCR 244


>gi|118469125|ref|YP_886420.1| NADH dehydrogenase subunit E [Mycobacterium smegmatis str. MC2 155]
 gi|118170412|gb|ABK71308.1| NADH-quinone oxidoreductase chain e [Mycobacterium smegmatis str.
           MC2 155]
          Length = 245

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E       ++I+RYP +R  SA++PLL   Q Q+G+++ A I   A  L +    V  +
Sbjct: 30  TESLRADAEQIIARYPDAR--SALLPLLHLVQAQDGYLTPAGIGFCAAQLGLTEAEVTAV 87

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY+ ++ +P G    V VC  T C + G + ++E   + +   P     DG ++ E V
Sbjct: 88  ATFYSMYRRTPTGD-YLVGVCTNTLCAIMGGDAILEALEDHLGVHPGQTTPDGRVTLEHV 146

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RISSAPAGGL 197
           EC  AC  AP+VM+  + Y++ TP    +++D   +G       G     R ++    GL
Sbjct: 147 ECNAACDYAPVVMVNWEFYDNQTPSSARDLVDGLRSGSPPPPTRGSLCTFRETARTLAGL 206

Query: 198 T 198
           T
Sbjct: 207 T 207


>gi|86739255|ref|YP_479655.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
 gi|86566117|gb|ABD09926.1| NADH dehydrogenase subunit E [Frankia sp. CcI3]
          Length = 262

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FS E+     E+I+RYP  R +SA++PLL   Q ++G V+   +   A++L +    V
Sbjct: 1   MAFSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQGCVTAQGVAFCADVLGITRAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C L G E + E     +         DG+++ 
Sbjct: 61  GAVATFYTMYKRHPVGD-YLVSVCTNLSCALLGGEDVYERVSKLLGVGHDETTPDGSITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + Y+ + P+  + I++    G+      G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVDPDSAQAIVEDLRAGRRPAPTRG 167


>gi|269128609|ref|YP_003301979.1| NADH-quinone oxidoreductase subunit E [Thermomonospora curvata DSM
           43183]
 gi|268313567|gb|ACY99941.1| NADH-quinone oxidoreductase, E subunit [Thermomonospora curvata DSM
           43183]
          Length = 240

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            ++S E+   +     E+I+RYP  R  SA++PLL   Q  +G ++   IE  A  L + 
Sbjct: 1   MAYSPETRAQLERDAKEIIARYPKPR--SALLPLLHLVQSVDGHITSDGIEFCAEQLGIT 58

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             +V  +ATFYT ++  PVG   HV VC  T C + G +++ E     +         DG
Sbjct: 59  PAQVTGVATFYTMYKHKPVGE-YHVGVCINTLCAVMGGDQIWEELSEYLGVGHDEATEDG 117

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
            +S E +EC  AC  AP+VM+  + ++++TPE+ ++++D    G+      GP   +   
Sbjct: 118 KISLERLECNAACDYAPVVMVNWEFFDNMTPEKAKQLVDDLRAGKEVAPTRGP---KRLC 174

Query: 192 APAGGLTSLLDNNSKKRGKKKKDDK 216
                   L      + G+  +  +
Sbjct: 175 TWKEASRVLAGFPDGRAGEGVQAGE 199


>gi|54295614|ref|YP_128029.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
 gi|53755446|emb|CAH16942.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Lens]
          Length = 155

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 9   IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 69  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           NAPM+ + KD +E+LT E ++++++ + 
Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQYQ 155


>gi|325105663|ref|YP_004275317.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
 gi|324974511|gb|ADY53495.1| NADH dehydrogenase subunit E [Pedobacter saltans DSM 12145]
          Length = 174

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  EE QP    FS E     +E++ RYP  + +SA++P+L   Q   GW+S +A++ VA
Sbjct: 2   LKVEETQPV--EFSSELVSKFDEIVRRYPEGKQKSALLPVLHEVQAVYGWLSSSAMDRVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L ++ I V E+ATFYT + L P G +  ++VC T PC L G EKL+     K+  +  
Sbjct: 60  EYLKISPIEVYEVATFYTMYFLKPQG-KFTLEVCRTGPCCLVGAEKLLNYIGEKLGVEEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDT 179
               DG  S+  VEC  AC   P++ IG +   YE+LT E ++++ID      G +
Sbjct: 119 EITPDGLFSYRGVECLAACGFGPVLQIGPEYTFYENLTIESVDKLIDDLKAKAGKS 174


>gi|77166019|ref|YP_344544.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254436398|ref|ZP_05049904.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884333|gb|ABA59014.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
 gi|207088088|gb|EDZ65361.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
          Length = 175

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 1   MSV----RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-W 55
           MSV    RR  +   +      S E    ++  I++YPP R QSAVIP L   Q   G +
Sbjct: 1   MSVGQPERR--KSRNREEENLLSSEVRQQIDYWIAKYPPERKQSAVIPALHIVQAVNGGY 58

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
           ++   ++ VA  L+M  I V E+ATFY+ ++L P+G R  + VC    C L G ++++  
Sbjct: 59  LTDKLLDAVAEYLEMRPISVYEVATFYSMYELKPIG-RHKISVCTNISCQLSGSDEVVAH 117

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + ++         D   + +E EC GAC  APM+M G   +E+LT E++++I++A  
Sbjct: 118 LQKRLGIGFGETTPDHRFTVKEAECLGACGGAPMMMAGHTYHENLTSEKIDQILEALK 175


>gi|54298768|ref|YP_125137.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
 gi|53752553|emb|CAH13985.1| NADH dehydrogenase I chain E [Legionella pneumophila str. Paris]
          Length = 155

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  IS+YP  + QSAV+  L   QE+ G ++   +  VA  LDM  I V E+A+FYT +
Sbjct: 9   IDHWISKYPKDQKQSAVMSALRIVQEEHGHLTTELMNAVAEYLDMPPIAVYEVASFYTMY 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  + VC    CMLR    ++E    K+         DG  +   VEC GACV
Sbjct: 69  EHKPVG-RHLINVCTNISCMLRDSAGVVEHLEKKLGVNLGGTTEDGRFTLRSVECLGACV 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           NAPM+ + KD +E+LT E ++++++ + 
Sbjct: 128 NAPMMQVDKDYHENLTAESIDKVLEQYQ 155


>gi|159039971|ref|YP_001539224.1| NADH dehydrogenase subunit E [Salinispora arenicola CNS-205]
 gi|157918806|gb|ABW00234.1| NADH-quinone oxidoreductase, E subunit [Salinispora arenicola
           CNS-205]
          Length = 305

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 1/171 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FSEE+     E+I+RYP  R +SA++PLL   Q +EG+VS A I   A +L +   +V  
Sbjct: 4   FSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAFCAEVLGLNKAQVGA 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  P G    V VC  T C + G +++ +     +        +DGT++ E 
Sbjct: 64  VASFYTMYKRRPTGDW-LVSVCTNTMCNVLGGQEVYDTLAEHLGVGHEETTADGTITLEH 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            EC  AC   P++ +  D ++++ P+    ++D    G   T   G ++ R
Sbjct: 123 AECLAACDYGPVMTVNYDFFDNVDPQSAVGVVDELRAGNQPTPSRGARLCR 173


>gi|300113269|ref|YP_003759844.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
           C-113]
 gi|299539206|gb|ADJ27523.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
           C-113]
          Length = 174

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATF 81
              +++ I++YPP + QSA+IP L   Q   G +++   ++ VA  L+M  I V E+ATF
Sbjct: 24  RQQIDDWIAKYPPEQKQSAIIPALHIVQAANGGYLTDKLLDAVAEYLEMRPISVYEVATF 83

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ ++L P+G R  + VC    C LRG ++++   R ++         D   + +E EC 
Sbjct: 84  YSMYELKPIG-RHKISVCTNISCQLRGSDEVVAHLRKRLGIGFGETTPDHRFTVKEAECL 142

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  APM+M G+  +E+LTP ++++I++A  
Sbjct: 143 GACGGAPMMMAGRTYHENLTPAKIDQILEALK 174


>gi|326799004|ref|YP_004316823.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
 gi|326549768|gb|ADZ78153.1| NADH-quinone oxidoreductase, E subunit [Sphingobacterium sp. 21]
          Length = 170

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 5/170 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +   P      ++     +E++ RYP  R +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LSVKNNSPVEIK--DDLLAKFDEIVKRYPEGRQKSALLPILHLVQAEFGWLSVDAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L +  I V E+ATFYT F L P G +  ++VC T PC L G E++++   N++  K  
Sbjct: 60  AYLRIEPIEVYEVATFYTMFFLQPQG-KYVLEVCRTGPCCLVGAERIMKHIENRLGVKEN 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFS 173
               DG  SW  +EC  AC   P++ IG     YE+LT E ++++I+   
Sbjct: 119 EVTPDGLFSWRGIECVAACGMGPVLQIGPTYTYYENLTEESVDQLIEELK 168


>gi|29654735|ref|NP_820427.1| NADH dehydrogenase (ubiquinone), E subunit [Coxiella burnetii RSA
           493]
 gi|29542003|gb|AAO90941.1| NADH-quinone oxidoreductase chain E [Coxiella burnetii RSA 493]
          Length = 174

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANIL 68
             Q   F   E     ++  +++YP  + +SAV+P L+  Q+Q  GW+S+AA+  +A+ L
Sbjct: 2   NEQTEQFILDEVVIKEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +  I V E+ATFY  + L P+G +  + +C   PC LRG ++++   + ++        
Sbjct: 62  QLPRIWVYEVATFYDMYNLKPMG-KHKISICQNVPCFLRGSDEIVACVKERLGIDFDETT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           SDG  + + VEC  AC  APM  I   + +E+LTPE++  IID    
Sbjct: 121 SDGLFTLKSVECMAACGGAPMCQIDDQEYHENLTPEKMIAIIDKLER 167


>gi|222475163|ref|YP_002563579.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
           Florida]
 gi|255003147|ref|ZP_05278111.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Puerto Rico]
 gi|255004273|ref|ZP_05279074.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Virginia]
 gi|222419300|gb|ACM49323.1| NADH dehydrogenase I chain E (nuoE) [Anaplasma marginale str.
           Florida]
          Length = 169

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANIL 68
           +     F F+ E+     + IS YP  R  SAV+PLL   Q Q  G++ ++AI  +A++L
Sbjct: 2   DQSSEKFEFTPENLEEARKYISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            M  + V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +        
Sbjct: 62  GMRPVHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDEST 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            D   +  EVEC GACVNAP+V I +D YEDL  E++ EI+      +
Sbjct: 121 KDNLFTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168


>gi|254995001|ref|ZP_05277191.1| NADH dehydrogenase subunit E [Anaplasma marginale str. Mississippi]
          Length = 169

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72
             F F+ E+     + IS YP  R  SAV+PLL   Q Q  G++ ++AI  +A++L M  
Sbjct: 6   EKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQTGGFIPQSAIGYIADLLGMRP 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +         D  
Sbjct: 66  VHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNL 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +  EVEC GACVNAP+V I +D YEDL  E++ EI+      +
Sbjct: 125 FTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168


>gi|56416799|ref|YP_153873.1| NADH dehydrogenase subunit E [Anaplasma marginale str. St. Maries]
 gi|269958789|ref|YP_003328577.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
 gi|56388031|gb|AAV86618.1| NADH dehydrogenase chain E [Anaplasma marginale str. St. Maries]
 gi|269848619|gb|ACZ49263.1| NADH dehydrogenase subunit E [Anaplasma centrale str. Israel]
          Length = 169

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72
             F F+ E+     + IS YP  R  SAV+PLL   Q Q  G++ ++AI  +A++L M  
Sbjct: 6   EKFEFTPENLEEARKHISHYPDDRKSSAVMPLLHLVQSQAGGFIPQSAIGYIADLLGMRP 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+  FY+ +  +PVG +  VQVC TTPC LRG   ++  C+  +         D  
Sbjct: 66  VHVREVVEFYSMYNTAPVG-KYLVQVCRTTPCWLRGGSDILNTCKKALKIDVDESTKDNL 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +  EVEC GACVNAP+V I +D YEDL  E++ EI+      +
Sbjct: 125 FTLREVECLGACVNAPVVQINEDYYEDLDSEKMGEILHKLKHSE 168


>gi|296536152|ref|ZP_06898280.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
 gi|296263523|gb|EFH10020.1| NADH-quinone oxidoreductase subunit E [Roseomonas cervicalis ATCC
           49957]
          Length = 218

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 11/218 (5%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG------ 54
           MS       E +P+SF+F  ES   + +++ RYP  +  S VIPLL  AQ+Q G      
Sbjct: 1   MSAPHSHHHE-EPASFAFDAESEAQIEKILKRYPEGKQASGVIPLLYVAQKQMGRATGSA 59

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV R A++ +A  L MA IRV E+ATFY  F   P+G R H+QVCGTTPC LRG ++++ 
Sbjct: 60  WVPRVAMDTIAERLGMAPIRVYEVATFYFMFNTRPIG-RFHLQVCGTTPCWLRGSDEVLR 118

Query: 115 VCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C+   H K     + DG  +  EVEC G CVNAP++ +  D YED+  E   ++++A  
Sbjct: 119 ACKEHGHLKGYGDTSEDGLFTMTEVECLGGCVNAPILQVDDDYYEDMDYETTVQLLEALK 178

Query: 174 TGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
            G+    +PG    R  SAP GG  ++LD        K
Sbjct: 179 RGE--RPKPGSMKGRQGSAPIGGPETVLDIPMDDAALK 214


>gi|326201388|ref|ZP_08191260.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
           DSM 2782]
 gi|325988956|gb|EGD49780.1| NADH-quinone oxidoreductase, E subunit [Clostridium papyrosolvens
           DSM 2782]
          Length = 164

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           ++E+++ + ++I +Y  +R   A+IP+L   QE  G++    ++ ++  L+++   +  +
Sbjct: 11  TDENSLKLGKIIDKYKETR--GALIPVLHEVQEVYGYLPEDVLKEISEKLNVSLAEIYGV 68

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFYTQF L+P G R  + +C  T C ++G   +++  + K+         DG  S +  
Sbjct: 69  VTFYTQFSLNPKG-RFKINICMGTACYVKGSGDILDKFKQKLGIDVGQCTEDGKFSLDAC 127

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP++MI  D +  L P+ ++ I+  + 
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLVPDDVDAILAKYK 162


>gi|298346122|ref|YP_003718809.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390118|ref|ZP_07372072.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657375|ref|ZP_07910257.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236183|gb|ADI67315.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326600|gb|EFL93844.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491847|gb|EFU81456.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 1/159 (0%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+ISRYP    +SA++PLL   Q ++G+VS   IE+ + +L ++   V  +ATFYTQ++
Sbjct: 17  QEIISRYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G   +V VC T+ C + G +++ E   + +        +DG ++ E +EC  AC  
Sbjct: 77  RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           AP++M+  + +++ TP+   +++D    G       GP 
Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPN 174


>gi|158317832|ref|YP_001510340.1| NADH dehydrogenase subunit E [Frankia sp. EAN1pec]
 gi|158113237|gb|ABW15434.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EAN1pec]
          Length = 273

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              +E++     E+I+RYP  R +SA++P+L   Q ++G V+   +E  A  L + +  V
Sbjct: 1   MPLTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEQGAVTAEGVEFCAEELGITHAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C+LRG E++ E     +         DGT++ 
Sbjct: 61  SAVATFYTMYKRRPVGDW-LVSVCTNLSCLLRGGEEVYERLSKNLGVGHDQTTEDGTITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + Y+ + P+  EEI++A   G+      G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVNPDSAEEIVEALRRGERPAPTRG 167


>gi|315654701|ref|ZP_07907607.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
           51333]
 gi|315491165|gb|EFU80784.1| NADH-quinone oxidoreductase subunit E [Mobiluncus curtisii ATCC
           51333]
          Length = 233

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 1/159 (0%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+I+RYP    +SA++PLL   Q ++G+VS   IE+ + +L ++   V  +ATFYTQ++
Sbjct: 17  REIIARYPEGHSRSALLPLLHLVQSEDGFVSANGIELCSELLGISPAEVSAVATFYTQYK 76

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G   +V VC T+ C + G +++ E   + +        +DG ++ E +EC  AC  
Sbjct: 77  RRPNGE-YNVGVCTTSLCAVMGGDEIWETVCDHLGIGNGETTADGKVTLEAIECNAACDF 135

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           AP++M+  + +++ TP+   +++D    G       GP 
Sbjct: 136 APVIMVNWEFFDNQTPQSAVKLVDDLRAGNPVQPTRGPN 174


>gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S]
 gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S]
          Length = 688

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 23  AIWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           A   +E+I+RY      PP   +SA++PLL   Q ++G VS+A IE  A  L +    V 
Sbjct: 33  AADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIEFCAAQLGLTAAEVT 92

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT ++  P GT  HV VC  + C + G + +    R  +         DG ++ E
Sbjct: 93  AVATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTPDGAITLE 151

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +EC  AC  AP++M+  + +++ TPE    ++DA   G+  T   G
Sbjct: 152 HIECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRG 198


>gi|226466935|emb|CAX75948.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Schistosoma
           japonicum]
          Length = 157

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG--CEKLIEVCRN 118
           +  VA IL++  +RV E+ATFYT F   PVG + H+Q+C TTPCML G   E ++   + 
Sbjct: 1   MNKVAEILNVPPMRVYEVATFYTMFNREPVG-KYHIQICTTTPCMLGGVGSEAILNTLKK 59

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  +P     D   +  EVEC GACVNAPM+ I  D YEDLT E    II     G+  
Sbjct: 60  TLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYYEDLTAEDTVRIIKEIKAGK-- 117

Query: 179 TIRPGPQI---DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
             +PGPQ     R +S P GGLTSL +   K  G K + D
Sbjct: 118 KPKPGPQSGQGGRFASEPKGGLTSL-NTEPKGPGFKVRSD 156


>gi|146296865|ref|YP_001180636.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410441|gb|ABP67445.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 160

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGGTTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L PE +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLAPEDIENILSRY 160


>gi|271962159|ref|YP_003336355.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270505334|gb|ACZ83612.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 219

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 7/173 (4%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            +++ E    +     E+I RYP +R  SA++PLL   Q ++G+VS    E  A +L ++
Sbjct: 1   MTYTPEVRERLEQDAKEIIGRYPKTR--SALLPLLHLVQSEDGYVSDDGQEFCAEMLGLS 58

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V+ ++TFYT ++  P+G   HV VC  T C + G +++ +               DG
Sbjct: 59  KAEVVGVSTFYTMYKRKPMGD-YHVGVCINTLCAVMGGDQIWDELSEHAGVGHDETTPDG 117

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            +S E +EC  AC  AP++M+  + +++ TP   ++++D    G+  +   GP
Sbjct: 118 KVSLERLECNAACDFAPVMMVNWEFFDNQTPASAKQLVDDLRDGKEISPTRGP 170


>gi|145596572|ref|YP_001160869.1| NADH dehydrogenase subunit E [Salinispora tropica CNB-440]
 gi|145305909|gb|ABP56491.1| NADH-quinone oxidoreductase, E subunit [Salinispora tropica
           CNB-440]
          Length = 317

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 2/185 (1%)

Query: 5   RLAEEEFQPSSFS-FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
             A    + +  + FSEE+     E+I+RYP  R +SA++PLL   Q +EG+VS A I  
Sbjct: 2   SDAVANGKGAPMTVFSEETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGIAF 61

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
            A +L +   +V  +A+FYT ++  P G    V VC  T C + G +++ +     +   
Sbjct: 62  CAEVLGLNKAQVGAVASFYTMYKRRPTGDW-LVSVCTNTMCNVLGGQEVYDALVEHLGVG 120

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                +DGT++ E  EC  AC   P++ +  D ++++ P+    ++D    G   T   G
Sbjct: 121 HEETTADGTVTLEHAECLAACDYGPVMTVNYDFFDNVDPQTAVGVVDELRAGSRPTSSRG 180

Query: 184 PQIDR 188
            ++ R
Sbjct: 181 ARLCR 185


>gi|241565641|ref|XP_002402024.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
 gi|215499938|gb|EEC09432.1| NADH-ubiquinone dehydrogenase, putative [Ixodes scapularis]
          Length = 149

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R  ++      F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 9   LFVHRDTDQNNANVKFEFTPENLKRAESLTSIYPDGHRAAAVIPLLDLAQRQHGWLPLTA 68

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+ L M  +RV E+ATFYT FQ +PVG + HVQVC TTPCMLRG E +  V   K+
Sbjct: 69  MHYVADYLGMPRMRVYEVATFYTMFQRNPVG-KYHVQVCTTTPCMLRGAEDIQAVIEKKL 127

Query: 121 HQKPLHRNSDGTLSWEEVECQG 142
              P   + DG  +   VEC G
Sbjct: 128 GIGPGETSKDGLFTLSVVECLG 149


>gi|227494507|ref|ZP_03924823.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
 gi|226832241|gb|EEH64624.1| possible NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM
           15436]
          Length = 224

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                ++++RYP    +SA++P+L   Q ++G+VS   I + A++L +    V  +ATFY
Sbjct: 11  RAEAAQIVARYPQGHERSALLPMLHLVQSEDGYVSADGIALCADVLGLTRPEVSAVATFY 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +Q++  P G   +V VC  + C + G +++ E     +        +DG ++ E +EC  
Sbjct: 71  SQYKRHPNGD-YNVGVCTNSLCAVMGGDQIWETVEGHLGIGHDETTADGKITLERLECNA 129

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP----AGGLT 198
           AC  AP+VM+  + +++ TPE    ++D    G+      GP   R         AG   
Sbjct: 130 ACDYAPVVMVNWEFFDNQTPESTIALVDDLVAGRPVAPTRGPNQIRTFKEISHLLAGFED 189

Query: 199 SLLDNNSK 206
            L+D    
Sbjct: 190 GLVDEGPG 197


>gi|220929649|ref|YP_002506558.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
           H10]
 gi|219999977|gb|ACL76578.1| NADH-quinone oxidoreductase, E subunit [Clostridium cellulolyticum
           H10]
          Length = 163

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           ++E+++ + ++I +Y  +R   A+IP+L   QE  G++S   ++ ++  L+++   +  +
Sbjct: 11  TDENSLKLGKIIDKYKGTR--GALIPVLHEVQEVYGYLSEDVLKEISEKLNVSLAEIYGV 68

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFYTQF L+P G R  + +C  T C ++G  +++E  + K+         DG  S +  
Sbjct: 69  VTFYTQFSLNPKG-RFKINICMGTACYVKGSGEILEKFKEKLGIDVGQCTEDGKFSLDAC 127

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP++MI  D +  L P+ +E I++ + 
Sbjct: 128 RCIGACGLAPVIMINDDVHGRLLPDDVEAILEKYK 162


>gi|121534129|ref|ZP_01665954.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
           Nor1]
 gi|121307232|gb|EAX48149.1| NADH-quinone oxidoreductase, E subunit [Thermosinus carboxydivorans
           Nor1]
          Length = 166

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   ++E++++Y     + A+IP+L  AQ   G++S+  IE +A  LD+   ++  + TF
Sbjct: 18  ALAQLDEILAKY--QGVKGALIPVLQEAQNAYGYLSKEVIEYIAEKLDIPVSQIYGVVTF 75

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L+P G R  ++VC  T C +RG + +++   + +        +D   + E V C 
Sbjct: 76  YAQFHLNPRG-RNIIRVCQGTACHVRGAKAILKALEDNLKITAGGTTADLKFTLETVACI 134

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP++MI  DT+  LTPE +  I+  +
Sbjct: 135 GACGLAPVMMINDDTHGRLTPEVIPSILAKY 165


>gi|312135111|ref|YP_004002449.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor owensensis OL]
 gi|311775162|gb|ADQ04649.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 160

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160


>gi|312793477|ref|YP_004026400.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876008|ref|ZP_07735997.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797206|gb|EFR13546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180617|gb|ADQ40787.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 160

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E+I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILSRY 160


>gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
 gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
          Length = 688

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 23  AIWVNEVISRY------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           A   +E+I+RY      PP   +SA++PLL   Q ++G VS+A I+  A  L +    V 
Sbjct: 33  AADADEIIARYRAPDDVPPGTARSALLPLLHLVQAEDGHVSQAGIDFCAAQLGLTAAEVT 92

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT ++  P GT  HV VC  + C + G + +    R  +        +DG ++ E
Sbjct: 93  AVATFYTMYRREPTGT-YHVGVCTNSLCAVMGGDAIHAALREHLGIGDGETTADGAITLE 151

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +EC  AC  AP++M+  + +++ TPE    ++DA   G+  T   G
Sbjct: 152 HIECNAACDFAPVMMVNWEFFDNRTPESATAVVDALRAGERVTPTRG 198


>gi|222529286|ref|YP_002573168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312622468|ref|YP_004024081.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222456133|gb|ACM60395.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312202935|gb|ADQ46262.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 160

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +++I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVKDILSRY 160


>gi|302035988|ref|YP_003796310.1| NADH-quinone oxidoreductase subunit E [Candidatus Nitrospira
           defluvii]
 gi|300604052|emb|CBK40384.1| NADH-quinone oxidoreductase, subunit E [Candidatus Nitrospira
           defluvii]
          Length = 178

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             E     +++++SRYP  R  SA++PLL  AQ ++G+++ AA++ +A +L +   +V E
Sbjct: 2   LKETHKAEIDDILSRYPVKR--SALLPLLYLAQREQGYITEAAMQEIAGLLKLTPPQVYE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            ATFYT   L PVG + H+QVC +  C L G + +I     K+  KP     D   +   
Sbjct: 60  TATFYTMLNLKPVG-KFHLQVCKSLMCALVGSDTVIGWISAKLGIKPGETTPDRLFTLSI 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           VEC  AC   PM+ +  D YE LT E+L+ I+         +++ GP
Sbjct: 119 VECLAACGTGPMMQVNDDYYERLTEEKLDRILADLRQTGTCSLKTGP 165


>gi|309389877|gb|ADO77757.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium praevalens
           DSM 2228]
          Length = 160

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 17  SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
             +EE        V E+++RY   + +  +IP+L  AQE+ G++    ++ +A  L+++ 
Sbjct: 3   EMTEEKLAEFLKPVAEILARY--GKKERYLIPVLQEAQEEYGYLPEEVLKEIAIGLNLSL 60

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  + TFY+QF   P G    ++VC  T C +RG E+++   ++++  +      D  
Sbjct: 61  SQVYGVVTFYSQFHQEPRGN-NIIRVCMGTACHVRGGEEILNAIKDELKIEAGQTTEDLE 119

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + E V C GAC  AP++MI  DT+  LTPE + EII  + 
Sbjct: 120 FTLESVACIGACGLAPVIMINDDTHGRLTPESIPEIISKYK 160


>gi|198284342|ref|YP_002220663.1| NADH-quinone oxidoreductase subunit E [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666126|ref|YP_002427004.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248863|gb|ACH84456.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518339|gb|ACK78925.1| NADH-quinone oxidoreductase, E subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 163

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE+S   +    ++YP  + +S ++  L  AQE+ G++S A +E +A +L +  I+V E
Sbjct: 2   LSEKSLAEIARERAKYPADQARSVLLAALRIAQEEHGYLSDAVMEHIAGLLGIPAIQVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            ATFY+ + L PVG R  + VCG+  C L G + +++    ++   P    +DG  + +E
Sbjct: 62  AATFYSMYDLQPVG-RHKLCVCGSVSCFLNGSDAILQHLSERLGVSPGETTADGLFTLQE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC +APM+ +G   YE+LT E L+ ++     G+ D +R
Sbjct: 121 VECLGACKDAPMLQVGDHYYENLTQESLDALLAKLR-GESDDVR 163


>gi|125972859|ref|YP_001036769.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           ATCC 27405]
 gi|256005729|ref|ZP_05430684.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 2360]
 gi|125713084|gb|ABN51576.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Clostridium thermocellum ATCC
           27405]
 gi|255990302|gb|EEU00429.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 2360]
 gi|316940903|gb|ADU74937.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           DSM 1313]
          Length = 165

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +NE+I +Y  ++   A++P+L  AQE  G++     + +A  L++    V  + TFY
Sbjct: 16  EQKLNEIIEKYKNTK--GALVPVLHEAQEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           TQF L+P G +  +QVC  T C ++G   ++E  + K+        SDG  S E   C G
Sbjct: 74  TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           AC  AP++MI  D Y  L P+ +E II+ +  
Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164


>gi|57641549|ref|YP_184027.1| NADH dehydrogenase subunit E [Thermococcus kodakarensis KOD1]
 gi|57159873|dbj|BAD85803.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus
           kodakarensis KOD1]
          Length = 154

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 30  ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP 89
           I  YPP    S++IPLL R QE+ G++ R  +E +AN L +   RV  +ATFY QF+  P
Sbjct: 8   IRSYPPE--PSSLIPLLQRTQERFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEP 65

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +G +  V+VC  T C + G   + +  + ++  +      DG ++ E V C G C  AP+
Sbjct: 66  LG-KYVVKVCHGTACHVNGAVNIAQALKEELGIEEGQTTEDGLVTLERVACLGCCSLAPV 124

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +MI +  +  LTP+++ +++     G+ D 
Sbjct: 125 IMINEKVFGKLTPDKVRKLVKQLKEGKLDV 154


>gi|255019911|ref|ZP_05291986.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970691|gb|EET28178.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
          Length = 163

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E +   +     +YP  + +SA++  L  AQE+ GW+    IE VA +L +  I+  E
Sbjct: 2   LTENALAAIAAERRKYPVDQARSALLAALRIAQEEHGWLPTELIEEVAEVLGIPSIQAFE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT + L PVG +  + VCG+  C L G + ++   + ++        +DG  + +E
Sbjct: 62  VATFYTMYDLKPVG-KHKLCVCGSVSCFLNGSDDILAHLQKRLGIGIGETTADGLFTLQE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           VEC GAC +AP++ +G    E LTPE ++ +I+    G  D 
Sbjct: 121 VECLGACKDAPVLHLGDRYVEHLTPEGVDALIEQLRGGSSDV 162


>gi|119714788|ref|YP_921753.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
 gi|119535449|gb|ABL80066.1| NADH dehydrogenase subunit E [Nocardioides sp. JS614]
          Length = 263

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S ++E+   + E+ +RYP  R  S ++P+L   Q  EG ++   IE  A++L +    V
Sbjct: 1   MSLTQETYGELQEIAARYPEPR--SGLLPMLHLVQSAEGRITPEGIEACADLLGVTAAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG   HV VC  T C + G + + +  ++ +         DG ++ 
Sbjct: 59  SGVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDAIFDRLKSDLGVGNDETTEDGKITL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--------- 186
           E +EC  AC  AP++M+  +  +++TP+    IID    G       GP+I         
Sbjct: 118 EHIECNAACDYAPVMMVNWEFMDNMTPDTAARIIDDLRAGNEVHSTRGPRIVTWREAERV 177

Query: 187 ------DRISSAPAGGLTSLL 201
                 D     PA G  SL+
Sbjct: 178 LAGFPDDLADEGPAAGRASLV 198


>gi|330465206|ref|YP_004402949.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
 gi|328808177|gb|AEB42349.1| NADH dehydrogenase subunit E [Verrucosispora maris AB-18-032]
          Length = 345

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E+     E+I+RYP  R +SA++PLL   Q +EG+VS A +   A +L +   +V  
Sbjct: 5   FTDETRARAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVAFCAEVLGLNKAQVGA 64

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FYT ++  P G    V VC  T C + G +++ +     +         DG ++ E 
Sbjct: 65  VASFYTMYKRRPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTEDGKITLEH 123

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            EC  AC   P++ +  D ++ + P+    ++D    G   T   G +
Sbjct: 124 AECLAACDYGPVMTVNYDFFDGVDPQGAVGLVDELRAGNRPTPSRGAR 171


>gi|302871904|ref|YP_003840540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574763|gb|ADL42554.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 160

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFRKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKEILKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVENILSRY 160


>gi|255533959|ref|YP_003094331.1| NADH-quinone oxidoreductase subunit E [Pedobacter heparinus DSM
           2366]
 gi|255346943|gb|ACU06269.1| NADH-quinone oxidoreductase, E subunit [Pedobacter heparinus DSM
           2366]
          Length = 170

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  EE QP    FS       +E++ RYP  + +SA++P+L   Q + GW+S AA++ VA
Sbjct: 2   LKVEEQQPV--EFSPALLTKFDEIVKRYPEGKHKSALLPILHEVQAELGWLSAAAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             LD+  I V E+A+FY+ + L P G +  ++VC T PC L G EKL+    NK+  K  
Sbjct: 60  AYLDIQDIEVYEVASFYSMYFLKPQG-KYVLEVCRTGPCCLVGAEKLMGHIENKLGVKEN 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
              +DG  SW  VEC  AC   P++ IG +   YE+L  ++++E+I+    
Sbjct: 119 EVTADGLFSWRGVECLAACGYGPVLQIGPEYTFYENLNEQKVDELIEDLRK 169


>gi|78044572|ref|YP_359585.1| Fe-hydrogenase subunit gamma [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996687|gb|ABB15586.1| Fe-hydrogenase, gamma subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 161

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E++S+Y     + A+IP+L  AQE  G++ R  +E ++  L + + +V  +ATFY
Sbjct: 14  KEKLKELLSQY--QGQKGALIPVLQGAQEIYGYLPREVMEEISRSLKIPFSKVYGVATFY 71

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF L P G R  ++ C  T C +RG  K+ E  +N++         D   + E V C G
Sbjct: 72  AQFHLKPRG-RNVIRACLGTACHVRGGAKVFETLKNELGIGDGETTPDLRFTLESVACIG 130

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP++M+  DTY  LTP++++EI+  +
Sbjct: 131 ACGLAPVIMVNNDTYGRLTPDKVKEILAKY 160


>gi|111220503|ref|YP_711297.1| NADH dehydrogenase subunit E [Frankia alni ACN14a]
 gi|111148035|emb|CAJ59701.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E)
           (NDH-1, chain E) [Frankia alni ACN14a]
          Length = 257

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FS E+     E+I+RYP  R +SA++PLL   Q ++G V+   +   A+ L +    V
Sbjct: 2   MAFSPETHAAAAEIIARYPAGRSRSALLPLLHLVQAEQGSVTTEGVTFCADTLGITQAEV 61

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C L G +++      ++         DG+++ 
Sbjct: 62  GAVATFYTMYKRRPVGD-YLVSVCTNLSCALLGGDEVFARVAERLGVGHDETTPDGSITL 120

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + Y+ + P+    I++    G+      G
Sbjct: 121 EHAECLAACDYAPVMTVNYEFYDQVDPDSAVAIVEGLQAGERPAPTRG 168


>gi|312127643|ref|YP_003992517.1| NADH dehydrogenase (ubiquinone) 24 kda subunit
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777662|gb|ADQ07148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 160

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +EE+   ++E+I +      + A+IP+L  AQE  G++     + +A  L++    V 
Sbjct: 8   NLTEENFKKLDEIIEK--NKSRRGALIPVLHEAQELFGYLPYEVQKRIAEGLNIPMAEVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT+F L P G    + VC  T C ++G +K+++  +  +         DG  S E
Sbjct: 66  GVATFYTRFTLKPTGD-HKISVCMGTACYVKGADKILDKLKELLKIDVGETTEDGKFSIE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP+V+I    Y  L+ + +E+I+  +
Sbjct: 125 ATRCLGACGLAPVVVIDNTVYGKLSVDDVEDILLRY 160


>gi|317123849|ref|YP_004097961.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
 gi|315587937|gb|ADU47234.1| NADH dehydrogenase subunit E [Intrasporangium calvum DSM 43043]
          Length = 255

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 19/224 (8%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
            L  E  +P +    E+  +   EVI+RYP  + +SA++PLL   Q  +G+V+   + + 
Sbjct: 14  HLRPESKEPYAPEVLEQLRVDAAEVIARYP--QKRSALLPLLHLVQSVDGYVTGRGVSLC 71

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A +LD+    V  +ATFYTQF+  P G    V VC  T C + G +++ +     +    
Sbjct: 72  AELLDLTEAEVSGVATFYTQFKRHPNGE-YTVGVCTNTLCAVMGGDQIFDTVAEHLGIGH 130

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               +DG ++ E +EC  AC  AP+VM   + +++ TP+   +++D    G+      GP
Sbjct: 131 DETTADGKITLERIECNAACDYAPVVMTNWEFFDNQTPDSTVQLVDDLREGKDVRPTRGP 190

Query: 185 -------QIDRISS---------APAGGLTSLLDNNSKKRGKKK 212
                  Q+ R+ +          P  G  SLL     K     
Sbjct: 191 DRVCTFKQVSRVLAGFHDGLADQGPGAGPASLLGLRIAKEHGWT 234


>gi|288917187|ref|ZP_06411556.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
 gi|288351378|gb|EFC85586.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EUN1f]
          Length = 242

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              +E++     E+I+RYP  R +SA++P+L   Q +EG V+   ++  A  L + +  V
Sbjct: 1   MPLTEQTRAAAREIIARYPEGRSRSALLPMLHLVQSEEGAVTAEGVDFCAEQLGLTHAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C+LRG E + +     +         DGT++ 
Sbjct: 61  GAVATFYTMYKRRPVGDW-LVSVCTNLSCLLRGGEDVYKRLSANLGVGHDQTTEDGTITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + Y+ +TP+  E I+DA   G+      G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFYDQVTPDSAEGIVDALRRGERPAPTRG 167


>gi|183981494|ref|YP_001849785.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium marinum M]
 gi|183174820|gb|ACC39930.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium marinum M]
          Length = 251

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P+ F       ++S ++   +     E+I RYP  R  SA++PLL   Q ++
Sbjct: 12  RLGPPPEEPNQFTVEGAPQAYSPDALARLEIEAKEIIGRYPDQR--SALLPLLHLVQGED 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A ++  AN L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E  ++ +        SDG+++   +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
           +G+      G P    R +S    GL
Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214


>gi|148284883|ref|YP_001248973.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
 gi|146740322|emb|CAM80726.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Boryong]
          Length = 192

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 70/161 (43%), Positives = 101/161 (62%), Gaps = 2/161 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
            FSFS E+ +   ++I+ YP  +  SAV+ +L  AQ Q   W+S + IE VAN+L M YI
Sbjct: 8   EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V EIA+FYT F L PVG + H+Q+CGTTPC LRG + ++  C+  +  +    + D   
Sbjct: 68  KVYEIASFYTMFNLQPVG-KYHIQICGTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +  E EC GAC NAP+V I  D YE+LT ++++EII+    
Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIKEIINNLHA 167


>gi|294827752|ref|NP_711072.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385595|gb|AAN48090.2| NADH dehydrogenase (ubiquinone) chain E [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 159

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
            + FSE S     +++  +P  R  S ++P L   Q + G+V +  +  +A  +   ++ 
Sbjct: 2   GYKFSETSEKRFQKMLKAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFYT +   PVG + H+Q+CGT+ C LRG +++ E    ++        SD  
Sbjct: 60  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQK 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + EEVEC GAC  APMV I  D YE LTPE++++I+D  +
Sbjct: 119 FTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDLN 159


>gi|297625732|ref|YP_003687495.1| NADH-quinone oxidoreductase chain E [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921497|emb|CBL56051.1| NADH-quinone oxidoreductase chain E [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 243

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 18/202 (8%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
             S + +EE+   +  + +RYP +R  SA++P+L   Q  +G VS A +  VA I  +  
Sbjct: 20  DQSTNITEETMAEMRAIAARYPDAR--SALMPMLHLVQSVDGRVSDAGMRAVAEIAGVNT 77

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFYT ++  P G   H+ VC T  C + G + L+     K+         DG 
Sbjct: 78  AQVNGVATFYTMYKRRPAG-HQHIGVCTTALCAVMGGDILLSHVEKKLGIHEGETTPDGK 136

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI------ 186
            S E +EC   C  AP++M+  +  +++TP + +E++D  + G+      G  I      
Sbjct: 137 FSLERLECNAGCDFAPVMMVNWEYMDNMTPAKADELLDKLAAGETVKSTRGATITDWRSA 196

Query: 187 ---------DRISSAPAGGLTS 199
                     R    P+ G +S
Sbjct: 197 ERVLAGFDDGRADEGPSAGESS 218


>gi|114321115|ref|YP_742798.1| NADH-quinone oxidoreductase, E subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227509|gb|ABI57308.1| NADH dehydrogenase subunit E [Alkalilimnicola ehrlichii MLHE-1]
          Length = 166

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
            + E    ++  +++YP  + QSAVIP L   Q+  G W+ R  ++ VA  L M  + V 
Sbjct: 10  LTPEMRAEIDHWLTKYPEDQKQSAVIPALHVVQDNSGGWLRREQMDAVAEYLGMDPVAVY 69

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F L PVG R  V +C    C L+G E ++     K+  K      D  ++ +
Sbjct: 70  EVATFYSMFDLEPVG-RHKVNICTNICCWLKGAEDIVAYTEKKLGIKLGETTPDQRITLK 128

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC  AC  APM+++    Y DLTPE++++I+DA 
Sbjct: 129 IEEECLAACTGAPMMVVDGHYYTDLTPEKIDQILDAL 165


>gi|332981825|ref|YP_004463266.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Mahella australiensis 50-1 BON]
 gi|332699503|gb|AEE96444.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Mahella australiensis 50-1 BON]
          Length = 162

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +  VI RY     +  ++P++ +AQE  G++       +A  LD+    V  +A
Sbjct: 10  EEKFQELKTVIDRYKN--MEGPLMPIMHKAQEIFGYLPLEVQNFIAEELDIPLTDVYGVA 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F L P G +  + +C  T C ++G +K+++  + ++         DG  + +   
Sbjct: 68  TFYSHFTLQPQG-KYTINICLGTACYVKGAQKVLDKLKEELKINEGETTPDGKFTIDATR 126

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++MI  + Y  L P+ + +I+  +
Sbjct: 127 CLGACGLAPVMMINGEVYGRLVPDDVPKILKRY 159


>gi|21222949|ref|NP_628728.1| NADH dehydrogenase subunit E [Streptomyces coelicolor A3(2)]
 gi|256785937|ref|ZP_05524368.1| NADH dehydrogenase subunit E [Streptomyces lividans TK24]
 gi|289769830|ref|ZP_06529208.1| NuoE [Streptomyces lividans TK24]
 gi|5042273|emb|CAB44527.1| NuoE, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289700029|gb|EFD67458.1| NuoE [Streptomyces lividans TK24]
          Length = 290

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP SR  SA++PLL   Q +EG V+R  ++  A++LD+    V  +ATFYT +
Sbjct: 34  AREIIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLDLTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  ++ +         DG ++ E +EC  AC 
Sbjct: 92  RRRPSGD-YQVGVCTNTLCAVMGGDAIFESLQDHLGVGNGETTEDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TP  ++ ++D    G+  T   G
Sbjct: 151 FAPVVMVNWEFFDNQTPASVKALVDDLRAGRPVTPTRG 188


>gi|162452500|ref|YP_001614867.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|161163082|emb|CAN94387.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 165

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             F+ + E      ++++RYP    Q+A IP+L   QEQEGWVS   +  VA  L ++  
Sbjct: 8   EQFALTAERRTEFEKILARYPN--RQAACIPVLHLCQEQEGWVSERVLRWVAEQLGLSAA 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFYT F   PVG +  V VC T  C L G ++++  C  ++         DG +
Sbjct: 66  HVQGVATFYTLFNKEPVG-KHQVWVCRTLSCALNGADQVLHHCEKRLGIHAGETTKDGKI 124

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +    EC  +C  APM+ + +D +E LT E+++ I+D  + 
Sbjct: 125 TLRTAECLASCGTAPMMQVDRDYHEGLTLEKVDAILDRLTR 165


>gi|45658579|ref|YP_002665.1| NADH dehydrogenase subunit I E [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601823|gb|AAS71302.1| NADH dehydrogenase I E subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 161

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
            + FSE S     +++  +P  R  S ++P L   Q + G+V +  +  +A  +   ++ 
Sbjct: 4   GYKFSETSEKRFQKMLEAFPDKR--SLILPCLYILQRENGFVDQEGMNYIAERIGDPISL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFYT +   PVG + H+Q+CGT+ C LRG +++ E    ++        SD  
Sbjct: 62  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLRGSDEIEEHICKRLGIHTGQTTSDQK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + EEVEC GAC  APMV I  D YE LTPE++++I+D  +
Sbjct: 121 FTLEEVECLGACGYAPMVQINDDFYEHLTPEKVDQILDDLN 161


>gi|88607823|ref|YP_505311.1| NADH dehydrogenase subunit E [Anaplasma phagocytophilum HZ]
 gi|88598886|gb|ABD44356.1| NADH dehydrogenase I, E subunit [Anaplasma phagocytophilum HZ]
          Length = 171

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAY 72
            SF F++ +     + ISRYP  R  SAV+PLL   Q+Q  G+V R+AIE +A +L M  
Sbjct: 7   ESFRFTDGNLEEAYKCISRYPEGRQASAVMPLLHLVQQQAGGFVPRSAIEYIAKLLSMRP 66

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + V E+  FY+ +  +PVG +  VQVC TTPC LR  + ++  C+  +  +      D  
Sbjct: 67  VHVREVVEFYSMYNTAPVG-KYLVQVCKTTPCWLRRSDDVLNACKRVLCVRVGETTKDNL 125

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            +  EVEC GACVNAP+V I  D YE+L  E +E+I+     G 
Sbjct: 126 FTLREVECLGACVNAPVVQINDDYYENLDAESMEKILLKLKEGN 169


>gi|297192784|ref|ZP_06910182.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721029|gb|EDY64937.1| NADH-quinone oxidoreductase subunit E [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 276

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                E+I+RYP SR  SA++PLL   Q +EG VSR  +   A +LD+    V  +ATFY
Sbjct: 25  EADAKEIIARYPGSR--SALLPLLHLVQSEEGHVSRTGMRFCAEMLDLTTAEVTAVATFY 82

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + ++  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  
Sbjct: 83  SMYRRKPSGE-YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTHDGKITLEHIECNA 141

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ TP+  ++++D    G+      G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTPQSAKQLVDDLRAGEQVVPTRG 182


>gi|303239627|ref|ZP_07326152.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
           CD2]
 gi|302592798|gb|EFL62521.1| NADH-quinone oxidoreductase, E subunit [Acetivibrio cellulolyticus
           CD2]
          Length = 164

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E+IS+Y  +R   A+IP+L  AQE  G++     + ++  L++    V  + TFYT
Sbjct: 17  QKLQEIISKYKDTR--GALIPVLHEAQEVYGYLPIEVQKKISEGLNVPLAEVYGVVTFYT 74

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           QF L+P G +  + VC  T C ++G  ++++  + K+  +    + DG  S +   C GA
Sbjct: 75  QFSLNPKG-KYKISVCMGTACYVKGSGQILDKFKEKLGLEVGQCSEDGMFSLDACRCIGA 133

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+VMI  D Y  L P+ +E II  +  
Sbjct: 134 CGLAPVVMINDDVYGRLVPDDIEGIIKKYKE 164


>gi|189183822|ref|YP_001937607.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
 gi|189180593|dbj|BAG40373.1| NADH dehydrogenase I chain E [Orientia tsutsugamushi str. Ikeda]
          Length = 184

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYI 73
            FSFS ++ +   ++I+ YP  +  SAV+ +L  AQ Q   W+S + IE VA +L M YI
Sbjct: 8   EFSFSSDTLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVAKLLKMPYI 67

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V EIA+FYT F L P+G + H+Q+C TTPC LRG + ++  C+  +  +    + D   
Sbjct: 68  KVYEIASFYTMFNLQPIG-KYHIQICCTTPCWLRGSDDIMNFCKKLLKIETGKTSQDKLF 126

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +  E EC GAC NAP+V I  D YE+LT +++EEII+    
Sbjct: 127 TVSETECLGACRNAPVVQINHDYYENLTNDKIEEIINNLHA 167


>gi|227874588|ref|ZP_03992751.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269977612|ref|ZP_06184579.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
 gi|306817872|ref|ZP_07451611.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
           35239]
 gi|307701384|ref|ZP_07638405.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
           FB024-16]
 gi|227844797|gb|EEJ54943.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|269934215|gb|EEZ90782.1| NADH-quinone oxidoreductase subunit e [Mobiluncus mulieris 28-1]
 gi|304649351|gb|EFM46637.1| NADH-quinone oxidoreductase subunit E [Mobiluncus mulieris ATCC
           35239]
 gi|307613545|gb|EFN92793.1| NADH-quinone oxidoreductase, E subunit [Mobiluncus mulieris
           FB024-16]
          Length = 234

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 1/165 (0%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E       E+I+RYP    +SA++P+L   Q ++G+VS   IE+ A +L +    V  +A
Sbjct: 10  ERLVKEAQEIINRYPEGHARSALLPMLHLVQSEDGYVSPNGIELCAELLGLNPAEVSAVA 69

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFYTQ++  P G    V VC  + C + G +++ +     +        +DG ++ E +E
Sbjct: 70  TFYTQYKRRPNGE-YTVGVCVNSLCAVMGGDEIWDTVCEHLGVGHEETTADGKITLEALE 128

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           C  AC  AP++M+  + +++ TPE   +++D    G       GP
Sbjct: 129 CNAACDYAPVIMVNWEFFDNQTPESAVKLVDDLRAGNPVGTTRGP 173


>gi|117927480|ref|YP_872031.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
 gi|117647943|gb|ABK52045.1| NADH dehydrogenase subunit E [Acidothermus cellulolyticus 11B]
          Length = 269

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                +V++RYP  R +SA++PLL   Q ++G+VS   I +VA+IL +    V  +ATFY
Sbjct: 53  RERAAQVLARYP--RPRSALMPLLYLVQAEQGYVSADGIRLVADILGLTTAEVTAVATFY 110

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G R  V VC  T C + G + + +  R  +  +      DG ++ E +EC  
Sbjct: 111 TMYRRRPCG-RYLVGVCTNTLCAILGGDAIFDALREHLGIENGETTPDGAVTLEHIECNA 169

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS------------ 190
           AC  AP+VM+  + +++ TP    E++D    G       G  +   +            
Sbjct: 170 ACDYAPVVMVNWEFFDNQTPASARELVDRLRAGDPPMPTRGAPLRTFTEISQLLAGFPDD 229

Query: 191 ---SAPAGGLTSLLDNN-SKKRGKKKK 213
              + P+ G  SL     ++ RG+   
Sbjct: 230 LADAGPSAGPASLAGLELARSRGEAAP 256


>gi|254172735|ref|ZP_04879409.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
           AM4]
 gi|214032891|gb|EEB73719.1| NADH dehydrogenase (ubiquinone) flavoprotein 2 [Thermococcus sp.
           AM4]
          Length = 154

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V+  ++ YPP    S++IPLL R QE+ G++ R  +E +A  L +   RV  +ATFY
Sbjct: 2   EAEVD-YLTSYPPE--PSSLIPLLQRTQERFGYLPREVLERIAEYLGIPLSRVYGVATFY 58

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+  P+G +  V++C  T C + G   +++    ++  +      DG ++ E V C G
Sbjct: 59  AQFRFEPLG-KYVVRICHGTACHVNGAVTIVQAITEELGIEEGQTTEDGLITLERVACLG 117

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            C  AP+VMI    +  LTP+++ ++I     G+ D 
Sbjct: 118 CCSLAPVVMINDKVFGKLTPDKVRKLIRKLREGKLDV 154


>gi|317057599|ref|YP_004106066.1| NADH-quinone oxidoreductase subunit E [Ruminococcus albus 7]
 gi|315449868|gb|ADU23432.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 7]
          Length = 163

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  + E    + EVI+++        ++P L  AQ   G++     +++A+ L ++   
Sbjct: 8   PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+QF L+P G +  + VC  T C ++G +K++E    K+  K     +DG  S
Sbjct: 66  VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +   C GAC  AP++++ +D Y  L PE++ +I+D++ 
Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPEQVAKILDSYK 163


>gi|327403948|ref|YP_004344786.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
 gi|327319456|gb|AEA43948.1| NADH dehydrogenase subunit E [Fluviicola taffensis DSM 16823]
          Length = 178

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 5/180 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRA 59
           +SV   + ++ +P    FS E  + V   I+ +P  + +SA++ +L  A+E+ G W+S  
Sbjct: 3   ISVTHNSTDQAEP---QFSAEKMVEVQRFIAMFPEGKQKSALMRILHLAEEEFGGWLSVP 59

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +  VA +L++  I V E+ATFYT F +   G +  ++VC T PCML G +++IE   NK
Sbjct: 60  TMNYVAGLLNIQPIEVYEVATFYTMFNIEKPG-KVVLEVCRTGPCMLVGSDQIIEHIENK 118

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +  K    ++DG  + +  EC GAC   PM+  GK  +E LTP +++E++D       + 
Sbjct: 119 LDIKVGQTSADGMFTLKTAECLGACGYGPMLQCGKHYHEHLTPAKVDELLDTLRKEHSEK 178


>gi|289207897|ref|YP_003459963.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943528|gb|ADC71227.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 176

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             S+     ++  ++RYP  + +SAV+  L   Q ++G++S A ++ VA  L +  I V 
Sbjct: 19  ELSDHEREEIDAWLARYPEDQKRSAVLGALRAVQHEDGYLSTAKMDAVAEYLGLPAIAVY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ +FY+ ++L PVG +  + VC    CMLRG E++IE   N++  K      DG    +
Sbjct: 79  EVGSFYSMYELEPVG-KHTIMVCNNISCMLRGSEQIIEHLENRLGIKLGESTPDGKFYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC  AC  APM+ +    YE+LTPE+++EI+D  
Sbjct: 138 MEEECLAACCGAPMMQVDHVYYENLTPEKVDEILDGL 174


>gi|326382759|ref|ZP_08204449.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
 gi|326198349|gb|EGD55533.1| NADH dehydrogenase subunit E [Gordonia neofelifaecis NRRL B-59395]
          Length = 227

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           VI+RYP  R  SA++PLL   Q  +G+++RA +   A  L +   +V  +ATFY+ ++  
Sbjct: 48  VIARYP--RSGSALLPLLHLVQSHDGYLTRAGVAFCAEQLGLTAAQVASVATFYSMYRRE 105

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G + ++      +  +P     DG ++ E VEC  AC  AP
Sbjct: 106 PTGD-YLVGVCTNTLCAVMGGDAILSELTETLGIRPGETTPDGRVTLEHVECNAACDFAP 164

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           +VM+  + ++D TP+  + ++D   +G       GP+I
Sbjct: 165 VVMVNWEFFDDQTPDSAKALVDDLRSGVPRAPSRGPEI 202


>gi|296169188|ref|ZP_06850841.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896086|gb|EFG75753.1| NADH-quinone oxidoreductase subunit E [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 252

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P++F       ++S E    +     E+I RYP  R  SA++PLL   Q ++
Sbjct: 12  RLGPPPEEPNAFVTEGAPQTYSPEVRARLEVDAKEIIGRYPDKR--SALLPLLHLVQAED 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +E   + L ++   V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLEFCGDQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAVF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +         DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197
           +G       G  +   R +S    GL
Sbjct: 189 SGDPKPPTRGAPLCAFRETSRILAGL 214


>gi|325681308|ref|ZP_08160837.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
 gi|324106999|gb|EGC01286.1| NADH-quinone oxidoreductase, E subunit [Ruminococcus albus 8]
          Length = 163

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  + E    + EVI+++        ++P L  AQ   G++     +++A+ L ++   
Sbjct: 8   PFQGTPEQEAQLKEVIAKHHD--QPGGLMPTLQEAQGIYGYLPIEVQKMIADGLGVSLSE 65

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+QF L+P G +  + VC  T C ++G +K++E    K+  K     +DG  S
Sbjct: 66  VFGVATFYSQFSLTPKG-KHRISVCLGTACYVKGSDKILEAVEAKLGIKSGECTADGMFS 124

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +   C GAC  AP++++ +D Y  L P+++ +I+D++ 
Sbjct: 125 IDSCRCVGACGLAPVMLVDEDVYGKLKPDQVAKILDSYK 163


>gi|220931475|ref|YP_002508383.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992785|gb|ACL69388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 162

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++E+I +Y        +IP+L  AQE  G++       +A  L +   +V  + +FY
Sbjct: 14  LKKLDEIILKYKD--KPGPLIPVLHEAQELYGYLPEEVQSYIAEGLGVPVSKVSGVVSFY 71

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F   P G    + VC  T C ++G E+++   + ++  +    + DG  +   + C G
Sbjct: 72  SFFTTKPKGE-HTINVCMGTACYVKGAEEILNRLKEELGIEEGETSEDGKFTMVGMRCLG 130

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           AC  AP+V I    Y  +TPE++ EII+++  
Sbjct: 131 ACSLAPVVTIDDKVYGKVTPEKMMEIIESYRK 162


>gi|116329150|ref|YP_798870.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330242|ref|YP_799960.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121894|gb|ABJ79937.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123931|gb|ABJ75202.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 159

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           S+ FSE S     +++  +P  R  S V+P L   Q + G+V +  +  +A  L   ++ 
Sbjct: 2   SYKFSEASEKRFRKMLEVFPDKR--SLVLPCLYILQRENGFVDQDGMAYIAERLGDPISL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFYT +   PVG + H+Q+CGT+ C L G +++ E    ++        SDG 
Sbjct: 60  AQVYGVATFYTLYNKKPVG-KYHIQICGTSSCYLLGSDEIEEHICKRLGIHMGQTTSDGK 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + EEVEC GAC  APMV IG D YE LTPE+++ I+D  +
Sbjct: 119 FTLEEVECLGACGYAPMVQIGDDFYEQLTPEKVDRILDNLN 159


>gi|167772593|ref|ZP_02444646.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
           17241]
 gi|167665071|gb|EDS09201.1| hypothetical protein ANACOL_03972 [Anaerotruncus colihominis DSM
           17241]
          Length = 164

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F+ + E    + EVI+ +   +   A++P+L  AQE  G++     +++++ LD+    
Sbjct: 9   PFTGTAEQEAKLREVIAAHKGQK--GALMPVLQGAQEIYGYLPIEVQKMISDGLDIPLEE 66

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFY+QF L+P G    + VC  T C ++G   +    + K+  +      DG  S
Sbjct: 67  IYGVATFYSQFTLNPKGQ-YKISVCLGTACYVKGAGDIFNRLQEKLGIESGMCTPDGKFS 125

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +   C GAC  AP++ I  + Y  LT + ++ I+  + 
Sbjct: 126 LDACRCIGACGLAPVMTINDEVYGRLTVDDVDTILAKYR 164


>gi|294630800|ref|ZP_06709360.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
 gi|292834133|gb|EFF92482.1| NADH dehydrogenase I, E subunit [Streptomyces sp. e14]
          Length = 293

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E       E+I+RYP SR  SA++P+L   Q +EG V+R  +   A++L +    V  +A
Sbjct: 31  ERLERDAREIIARYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCADVLGLTTAEVTAVA 88

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFYT ++  P G    V VC  T C + G + L E  +  +         DG ++ E +E
Sbjct: 89  TFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDALFETLQEHLGVGNGETTDDGKVTLEHIE 147

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AC  AP+VM+  + +++ TP  ++ ++D    G+  T   G
Sbjct: 148 CNAACDFAPVVMVNWEFFDNQTPASVKRLVDDLRAGRPVTPTRG 191


>gi|332830192|gb|EGK02820.1| hypothetical protein HMPREF9455_01070 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75
           + S+E    +NE++S YP  + +SA++P+L   Q+    W+S   ++ VA IL++  I V
Sbjct: 12  NMSDELMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 71

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFYT F   PV  +   + C T  C LRG E L++    K+  K      DG  S 
Sbjct: 72  YEVVTFYTMFNQKPV-AKYMFEFCRTACCGLRGGEDLMDYTCQKLGVKQGEITPDGMFSV 130

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             VEC GAC   PM+ +G + +E+LT ++++ +I+    G+
Sbjct: 131 VGVECLGACGYGPMLQLGDNYHENLTKDKIDTLIEDCKEGK 171


>gi|289522153|ref|ZP_06439007.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503989|gb|EFD25153.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 161

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + +      E+++  P    Q  +IP+L   Q + G++   A+  ++  L M    +  +
Sbjct: 10  TVDVVEKTKEIVA--PWKGKQGGLIPILQEVQREFGYLPEDALLTISRELKMPKAEIYGV 67

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY QF L P G R  ++VC  T C +RG  +++E  +  +         D   + E V
Sbjct: 68  ATFYAQFHLKPRG-RHIIRVCRGTACHVRGSLQILEKIKQTLGIDENETTEDLRFTLEPV 126

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            C GAC  AP++M+ +DT+  +TP++++ I+D +
Sbjct: 127 ACLGACGLAPVMMVDEDTHGRMTPDKIQSILDRY 160


>gi|256821519|ref|YP_003145482.1| NADH-quinone oxidoreductase subunit E [Kangiella koreensis DSM
           16069]
 gi|256795058|gb|ACV25714.1| NADH-quinone oxidoreductase, E subunit [Kangiella koreensis DSM
           16069]
          Length = 164

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  IS+YP  R +SA+IP+L   QE+ G +SR A++  A+ L++ +I   E
Sbjct: 10  LSAESIEKIDLWISKYPTERKRSAIIPVLTIVQEELGHLSREAMDASADYLEIPHIAAYE 69

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+ F+L P G +  V +C    CM+ G E L +  ++++  +P   + DG +S +E
Sbjct: 70  VATFYSMFRLEP-GGKHVVSLCTNVSCMMAGSEALKKWFKDELGIEPGQTSKDGRISLKE 128

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           VEC  AC  APM+ + K  +E+LT E++ ++I   +
Sbjct: 129 VECMAACGGAPMLEVDKQYHENLTVEKMADLIRDLN 164


>gi|110637783|ref|YP_677990.1| NADH dehydrogenase I subunit E [Cytophaga hutchinsonii ATCC 33406]
 gi|110280464|gb|ABG58650.1| NADH dehydrogenase subunit E [Cytophaga hutchinsonii ATCC 33406]
          Length = 177

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 2/156 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F FSE S   + E+ +RYP  R +SA++P+L  AQ++ G W+    ++ VA++LD+  I 
Sbjct: 8   FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V E+A+FY+ + L PVG +   + C T PC L G E+LIE   +K+  K    ++DG  +
Sbjct: 68  VYEVASFYSMYNLKPVG-KCMFEFCQTGPCCLNGVEELIEYTEDKLGIKLNQTSADGRFT 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            + VEC G+C  APM  IG   YE+LT E++++II+
Sbjct: 127 IKAVECMGSCGTAPMAQIGTYYYENLTKEKIDKIIE 162


>gi|302553430|ref|ZP_07305772.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
           40736]
 gi|302471048|gb|EFL34141.1| NADH dehydrogenase subunit E [Streptomyces viridochromogenes DSM
           40736]
          Length = 303

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFYT +
Sbjct: 34  AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCAEMLGLTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 92  RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TP     ++D    G+  T   G
Sbjct: 151 FAPVVMVNWEFFDNQTPSSARRLVDDLRAGRPVTPTRG 188


>gi|149280566|ref|ZP_01886682.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
 gi|149228681|gb|EDM34084.1| NADH dehydrogenase I chain E [Pedobacter sp. BAL39]
          Length = 170

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 5/171 (2%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L  EE QP   +FS        E++SRYP  + +SA++P+L   Q + GW+S  A++ VA
Sbjct: 2   LKVEEQQPV--AFSAALLEKCAEIVSRYPEGKHKSALLPILHEVQAELGWLSANAMDKVA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L++  I V E+A+FYT + L P G +  +++C T PC L G EKL++     +  K  
Sbjct: 60  EYLNIQPIEVYEVASFYTMYFLKPQG-KYMLEICRTGPCCLVGAEKLMDHLEQTLGVKEG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFST 174
               DG  SW  VEC  AC   P++ IG +   YE+L  ++L+++I     
Sbjct: 119 EVTPDGLFSWRGVECLAACGYGPVLQIGPEYTFYENLDKQKLDDLIQDLRK 169


>gi|325067541|ref|ZP_08126214.1| NADH dehydrogenase subunit E [Actinomyces oris K20]
          Length = 256

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT  HV VC    C + G +++ +             + DGT+S E VEC  AC 
Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198
            AP+VM+  + +++ TP+    +I A   G+      GP       + +R+ +    G T
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226


>gi|74317164|ref|YP_314904.1| NADH dehydrogenase subunit E [Thiobacillus denitrificans ATCC
           25259]
 gi|74056659|gb|AAZ97099.1| NADH dehydrogenase I chain E [Thiobacillus denitrificans ATCC
           25259]
          Length = 168

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             S E+   ++  +++YP  + QSAV+  L  AQ ++GW+    I+ VA+ L M  I   
Sbjct: 12  ELSAEALALIDAEVAKYPADQKQSAVMAALRIAQVEKGWLKPELIDYVADYLQMPPIAAY 71

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY  +   PVG R  + VC   PC LRG  ++    + K+         DG  + +
Sbjct: 72  EVATFYNMYDTQPVG-RHKITVCTNLPCALRGAGEIAAHLKEKLGIGFGETTEDGRYTLK 130

Query: 137 EVECQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFS 173
           E EC GAC +APM +    T +  LTPE+++E++D   
Sbjct: 131 EGECMGACGDAPMCLHNNHTMHTHLTPEKVDELLDKLK 168


>gi|326772148|ref|ZP_08231433.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
 gi|326638281|gb|EGE39182.1| NADH dehydrogenase I, E subunit [Actinomyces viscosus C505]
          Length = 256

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 8/180 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVGT  HV VC    C + G +++ +             + DGT+S E VEC  AC 
Sbjct: 108 RRHPVGT-YHVGVCTNALCAVMGGDEIWKAVTEHTGLGAEETSEDGTISLERVECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198
            AP+VM+  + +++ TP+    +I A   G+      GP       + +R+ +    G T
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226


>gi|118617950|ref|YP_906282.1| NADH dehydrogenase subunit E [Mycobacterium ulcerans Agy99]
 gi|118570060|gb|ABL04811.1| NADH dehydrogenase I (chain E) NuoE (NADH- ubiquinone
           oxidoreductase chain E) [Mycobacterium ulcerans Agy99]
          Length = 251

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P+ F       ++  ++   +     E+I RYP  R  SA++PLL   Q ++
Sbjct: 12  RLGPPPEEPNQFTVEGAPQAYPPDALARLEIEAKEIIGRYPDQR--SALLPLLHLVQGED 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A ++  AN L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLQFCANQLGLTGAEVSAVASFYTMYRRGPTGE-YLVGVCTNTLCAVMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E  ++ +        SDG+++   +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 ETLKDHLGVGNDETTSDGSVTLGHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
           +G+      G P    R +S    GL
Sbjct: 189 SGEPIAPTRGAPLCGFRQTSRILAGL 214


>gi|320532545|ref|ZP_08033354.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135239|gb|EFW27378.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 256

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY
Sbjct: 45  QDDIERIIARYPAGKERSALIPMLHLIQSVDGYVSPAGIALCAARLGLERAEVSAVATFY 104

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +QF+  PVGT  HV VC    C + G +++               + DGT+S E VEC  
Sbjct: 105 SQFRRHPVGT-YHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERVECNA 163

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAG 195
           AC  AP+VM+  + +++ TP+    +I A   G+      GP       + +R+ +    
Sbjct: 164 ACDYAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVVPTRGPETVPTFRENERLLAGFED 223

Query: 196 GLT 198
           G T
Sbjct: 224 GRT 226


>gi|54024632|ref|YP_118874.1| NADH dehydrogenase subunit E [Nocardia farcinica IFM 10152]
 gi|54016140|dbj|BAD57510.1| putative NADH dehydrogenase I chain E [Nocardia farcinica IFM
           10152]
          Length = 245

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 6/176 (3%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
            E + PS     E  A+   E+I RYP  R  SA++PLL   Q ++G+V+   IE  A  
Sbjct: 21  PEPYPPSVR---ERLALDAKEIIGRYPQPR--SALLPLLHLVQSEDGYVTATGIEFCAEQ 75

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+ F+ +P G   HV VC  T C + G + ++      +       
Sbjct: 76  LGLTGAEVTAVATFYSMFRRTPTGD-YHVGVCTNTLCAVLGGDAILASLTEHLGIAAGET 134

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +DG ++ E +EC  AC  AP+VM+  + +++ TPE    ++DA   G+      G
Sbjct: 135 TADGAITVEHIECNAACDFAPVVMVNWEFFDNQTPESARALVDALRAGEPVRPSRG 190


>gi|326329614|ref|ZP_08195936.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
 gi|325952610|gb|EGD44628.1| NADH dehydrogenase I, E subunit [Nocardioidaceae bacterium Broad-1]
          Length = 213

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 3/171 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S + E+   + E+ +RYP +R  S ++P+L   Q  EG V+   I+  A++L +    V
Sbjct: 1   MSLAPETFDELREIAARYPQAR--SGLLPMLHLVQSVEGRVTPEGIQACADVLGLTPAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG R HV VC  T C + G +++    R K+        +DG ++ 
Sbjct: 59  SGVATFYTMYKRHPVG-RHHVGVCTNTLCAVMGGDEIFACLREKLEVGNDETTADGAITL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           E +EC  AC  AP+VM+  + +++ TPE   +++D    G+      G +I
Sbjct: 118 EHIECNAACDYAPVVMVNWEFFDNQTPESAAQLVDDLREGREVVASRGARI 168


>gi|239980148|ref|ZP_04702672.1| NADH dehydrogenase subunit E [Streptomyces albus J1074]
 gi|291452003|ref|ZP_06591393.1| ATP synthase subunit E [Streptomyces albus J1074]
 gi|291354952|gb|EFE81854.1| ATP synthase subunit E [Streptomyces albus J1074]
          Length = 291

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                 +I+RYP SR  SA++P+L   Q +EG+V+R  +   A +L +    V  +ATFY
Sbjct: 31  KADAEAIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMAFCAELLGLTTAEVTAVATFY 88

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + +  +  +         DG ++ E +EC  
Sbjct: 89  TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFDELKEHLGVGNDETTEDGKITLEHIECNA 147

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ TP+  + ++D    G+      G
Sbjct: 148 ACDYAPVVMVNWEFFDNQTPDSAKRLVDDLREGRTVEPTRG 188


>gi|288942130|ref|YP_003444370.1| NADH-quinone oxidoreductase subunit E [Allochromatium vinosum DSM
           180]
 gi|288897502|gb|ADC63338.1| NADH-quinone oxidoreductase, E subunit [Allochromatium vinosum DSM
           180]
          Length = 175

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 4/175 (2%)

Query: 1   MSVR--RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVS 57
           MS R    A E     S  FS E    ++  I++YPP   QSAV+P L   Q+  G W++
Sbjct: 1   MSFRNAPQAVEHDVDKSALFSPEIREAIDAHIAKYPPEWKQSAVMPALSIVQDANGGWLT 60

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
              ++ VA  LDM  + V E+ATFY  + L+P G R  V VC +  CML G E+LIE   
Sbjct: 61  TELMDDVAAYLDMPAVSVYEVATFYGMYDLTPQG-RHKVCVCNSISCMLNGSEELIEHVE 119

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +K   K     SDG  + +EVEC GAC +AP V++ K  +E LTPE L+++ID  
Sbjct: 120 HKYGVKVGETTSDGRFTLKEVECLGACRDAPAVLLDKVYHEKLTPESLDKLIDGL 174


>gi|41409303|ref|NP_962139.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398123|gb|AAS05753.1| NuoE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 252

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P++F       S+  E    +     E++ RYP  R  SA++PLL   Q Q+
Sbjct: 12  RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +E     L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +         DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 DALKEHLGIDNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197
            G+      G  +   R +S    GL
Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214


>gi|282860723|ref|ZP_06269789.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
 gi|282564459|gb|EFB69995.1| NADH-quinone oxidoreductase, E subunit [Streptomyces sp. ACTE]
          Length = 285

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                EVI+RYP SR  SA++PLL   Q +EG+VSR  +   A +L +    V  +ATFY
Sbjct: 29  EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAELLGLTTAEVTAVATFY 86

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + +  ++ +         DG ++ E +EC  
Sbjct: 87  TMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDRLKDHLGVGNDETTEDGKVTLEHIECNA 145

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186


>gi|296103966|ref|YP_003614112.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058425|gb|ADF63163.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 166

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + ++++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166


>gi|160935013|ref|ZP_02082399.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
 gi|156866466|gb|EDO59838.1| hypothetical protein CLOLEP_03889 [Clostridium leptum DSM 753]
          Length = 164

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 3/165 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           ++      FS ++E    + E+I ++       A++P+L  AQ   G++     ++VA+ 
Sbjct: 2   QKRISNIPFSGTKEQEAQLFEIIEKHKNE--PGAIMPVLQEAQNVYGYLPIEVQQMVADG 59

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+QF L+P G + ++ VC  T C ++G  K++E    ++  +    
Sbjct: 60  LGVPLSEVFGVATFYSQFSLTPKG-KYNISVCLGTACYVKGSGKILEELSKELGIEAEEC 118

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             DG  S     C GAC  AP++ I  D Y  L PE ++ I+  +
Sbjct: 119 TEDGKFSLTACRCIGACGLAPVITINDDVYGRLVPEDVKGILAKY 163


>gi|302389264|ref|YP_003825085.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Thermosediminibacter oceani DSM
           16646]
 gi|302199892|gb|ADL07462.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Thermosediminibacter oceani DSM
           16646]
          Length = 162

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    V+E++ +Y   +    ++ +L  AQ   G++       VA  LD+    V    
Sbjct: 12  QEKLQKVDEMLKKYKGQK--GVLLQVLQEAQRIVGYLPLEVQIRVAEALDVTLSEVYSTI 69

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F L P G +  ++VC  T C ++G +K++     ++  K      D   S E   
Sbjct: 70  TFYSFFNLKPRG-KYQIRVCLGTACYVKGADKVLNRIEQELKIKVGETTEDLKFSLEACR 128

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP+VMI  D Y  LTP+R+ EI+  +
Sbjct: 129 CVGACGLAPVVMINDDVYGRLTPDRVPEILKNY 161


>gi|118463625|ref|YP_883189.1| NADH dehydrogenase subunit E [Mycobacterium avium 104]
 gi|118164912|gb|ABK65809.1| NADH-quinone oxidoreductase chain e [Mycobacterium avium 104]
          Length = 252

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P++F       S+  E    +     E++ RYP  R  SA++PLL   Q Q+
Sbjct: 12  RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +E     L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +         DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197
            G+      G  +   R +S    GL
Sbjct: 189 AGKPRHPTRGAPLCVFRETSRILAGL 214


>gi|281417058|ref|ZP_06248078.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           JW20]
 gi|281408460|gb|EFB38718.1| NADH-quinone oxidoreductase, E subunit [Clostridium thermocellum
           JW20]
          Length = 165

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +NE+I +Y  ++   A++P+L  A+E  G++     + +A  L++    V  + TFY
Sbjct: 16  EQKLNEIIEKYKNTK--GALVPVLHEAEEVYGYLPLEVQKKIAEGLNIPLAEVYGVVTFY 73

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           TQF L+P G +  +QVC  T C ++G   ++E  + K+        SDG  S E   C G
Sbjct: 74  TQFSLNPKG-KYKIQVCMGTACYVKGSGAILEKLKEKLEIDVGECTSDGKFSLEACRCIG 132

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           AC  AP++MI  D Y  L P+ +E II+ +  
Sbjct: 133 ACGLAPVIMINDDVYGRLVPDDIEGIIEKYKK 164


>gi|302864905|ref|YP_003833542.1| NADH-quinone oxidoreductase subunit E [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501190|ref|YP_004080077.1| NADH-quinone oxidoreductase, e subunit [Micromonospora sp. L5]
 gi|302567764|gb|ADL43966.1| NADH-quinone oxidoreductase, E subunit [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407809|gb|ADU05926.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. L5]
          Length = 364

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 1/170 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            SFSE +     E+I+RYP  R +SA++PLL   Q +EG+VS A +E  A +L +   +V
Sbjct: 1   MSFSETTRTRAREIIARYPADRSRSALLPLLHLVQSEEGYVSPAGVEFCAEVLGLNKAQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  P G    V VC  T C + G +K+ +     +        +DG ++ 
Sbjct: 61  GAVATFYTMYKRKPTGD-YLVSVCTNTMCDVLGGQKVYDTLAEHLGVGHEETTADGKITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           E  EC  AC   P++ +  D ++++ P+   ++++    G       G +
Sbjct: 120 EHAECLAACDYGPVMTVNYDFFDNVEPQAALDVVEELRAGGRPMPTRGAR 169


>gi|15802832|ref|NP_288859.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 EDL933]
 gi|15832423|ref|NP_311196.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. Sakai]
 gi|168748134|ref|ZP_02773156.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755037|ref|ZP_02780044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761276|ref|ZP_02786283.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767911|ref|ZP_02792918.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772989|ref|ZP_02797996.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780140|ref|ZP_02805147.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787192|ref|ZP_02812199.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798455|ref|ZP_02823462.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC508]
 gi|195935662|ref|ZP_03081044.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. EC4024]
 gi|208807945|ref|ZP_03250282.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208812470|ref|ZP_03253799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821285|ref|ZP_03261605.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209399385|ref|YP_002271694.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|217327662|ref|ZP_03443745.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|254794177|ref|YP_003079014.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223261|ref|ZP_05937542.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259189|ref|ZP_05951722.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283526|ref|YP_003500344.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|12516635|gb|AAG57414.1|AE005460_8 NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. EDL933]
 gi|13362639|dbj|BAB36592.1| NADH dehydrogenase I chain E [Escherichia coli O157:H7 str. Sakai]
 gi|187771310|gb|EDU35154.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017168|gb|EDU55290.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|189002112|gb|EDU71098.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357595|gb|EDU76014.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362963|gb|EDU81382.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368261|gb|EDU86677.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372933|gb|EDU91349.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378906|gb|EDU97322.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC508]
 gi|208727746|gb|EDZ77347.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208733747|gb|EDZ82434.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741408|gb|EDZ89090.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160785|gb|ACI38218.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765098|gb|ACI80861.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765100|gb|ACI80862.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765102|gb|ACI80863.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765104|gb|ACI80864.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|209765106|gb|ACI80865.1| NADH dehydrogenase I chain E [Escherichia coli]
 gi|217320029|gb|EEC28454.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|254593577|gb|ACT72938.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O157:H7
           str. TW14359]
 gi|290763399|gb|ADD57360.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|320192094|gb|EFW66739.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. EC1212]
 gi|320641112|gb|EFX10591.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. G5101]
 gi|320646500|gb|EFX15419.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. 493-89]
 gi|320651597|gb|EFX19977.1| NADH dehydrogenase subunit E [Escherichia coli O157:H- str. H 2687]
 gi|320657349|gb|EFX25151.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663051|gb|EFX30368.1| NADH dehydrogenase subunit E [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667869|gb|EFX34777.1| NADH dehydrogenase subunit E [Escherichia coli O157:H7 str. LSU-61]
 gi|326339636|gb|EGD63447.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. 1125]
 gi|326344098|gb|EGD67859.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli O157:H7
           str. 1044]
          Length = 166

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+ +LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHANLTPEAIPELLERYK 166


>gi|261340673|ref|ZP_05968531.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317087|gb|EFC56025.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|295098076|emb|CBK87166.1| NADH dehydrogenase subunit E [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 166

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYEIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  KVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + ++++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166


>gi|254776459|ref|ZP_05217975.1| NADH dehydrogenase subunit E [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 252

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P++F       S+  E    +     E++ RYP  R  SA++PLL   Q Q+
Sbjct: 12  RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPDKR--SALLPLLHLVQSQD 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +E     L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLEFCGEQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +         DG+++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 DALKEHLGIGNDETTPDGSVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197
            G+      G  +   R +S    GL
Sbjct: 189 AGEPRHPTRGAPLCVFRETSRILAGL 214


>gi|157736573|ref|YP_001489256.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
 gi|315635736|ref|ZP_07890999.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
 gi|157698427|gb|ABV66587.1| NADH-quinone oxidoreductase, E subunit [Arcobacter butzleri RM4018]
 gi|315480033|gb|EFU70703.1| NADH-quinone oxidoreductase subunit E [Arcobacter butzleri JV22]
          Length = 161

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +SF ++ E+ I   E +SRYP  +  S ++P L   QEQEGWVS  A+  VA+ L    I
Sbjct: 2   NSFKYTSENEIKFQEYVSRYP--KIDSCMLPALWLVQEQEGWVSPEAMVYVADRLGKTPI 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V E+ATFYT F L P+G + H+++C T  CM+ G ++L +  ++ +  +    ++DG  
Sbjct: 60  QVYEVATFYTMFNLKPIG-KYHIELCKTVSCMVCGAKELKQYIKDVLGLESGQTSADGLF 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           ++ EVECQGAC +APM+ +    +  LT E+LE+II
Sbjct: 119 TFTEVECQGACGDAPMIALNNVYHGKLTKEKLEKII 154


>gi|283786353|ref|YP_003366218.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
           ICC168]
 gi|282949807|emb|CBG89430.1| NADH-quinone oxidoreductase subunit E [Citrobacter rodentium
           ICC168]
          Length = 166

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSEAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166


>gi|293191720|ref|ZP_06609277.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
 gi|292820492|gb|EFF79474.1| NADH dehydrogenase I, E subunit [Actinomyces odontolyticus F0309]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 21/206 (10%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            S++ ++   +     ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  LD+ 
Sbjct: 1   MSYTPDTLARLQADAAQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFYTQ++  P G    V VC    C + G +++ E    K+       + DG
Sbjct: 61  RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184
            ++ E +EC  AC  AP+VM+  + +++ +PE    +ID    G+      GP       
Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179

Query: 185 QIDRISS---------APAGGLTSLL 201
           + +R+ +          P+ G  +LL
Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLL 205


>gi|225572037|ref|ZP_03780901.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040472|gb|EEG50718.1| hypothetical protein RUMHYD_00331 [Blautia hydrogenotrophica DSM
           10507]
          Length = 164

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
             +    +FS +EE    + +VI      +   A++P+L +AQ+  G++ +  ++++++ 
Sbjct: 2   PNKKTTVAFSGTEEQEEALRKVIEEMKEEK--GALMPILQKAQDIYGYLPKEVMKIISDE 59

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
             +   ++  +ATFY+QF L+P G +  + VC  T C ++G   +      K+       
Sbjct: 60  TQIPMEKIYGVATFYSQFTLNPKG-KYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGEC 118

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             DG  S +   C GAC  AP++MI  + Y  LT + +++I+  +
Sbjct: 119 TPDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163


>gi|154508641|ref|ZP_02044283.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798275|gb|EDN80695.1| hypothetical protein ACTODO_01142 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 21/206 (10%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            S++ ++   +     ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  LD+ 
Sbjct: 1   MSYTPDTLARLQADATQIIARYPDGHSRSALLPMLHLIQSVDGYVSPDGIDFISATLDLP 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFYTQ++  P G    V VC    C + G +++ E    K+       + DG
Sbjct: 61  RAEISAVATFYTQYKRHPTGE-YLVGVCTNALCAVMGGDEIWEKVSEKVGVGSDETSEDG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184
            ++ E +EC  AC  AP+VM+  + +++ +PE    +ID    G+      GP       
Sbjct: 120 KITLERIECNAACDYAPVVMVNWEFFDNQSPESALAMIDDIQAGRDIHPTRGPIVAPTFK 179

Query: 185 QIDRISS---------APAGGLTSLL 201
           + +R+ +          P+ G  +LL
Sbjct: 180 ENERVLAGFLDGHENEGPSAGRATLL 205


>gi|317492620|ref|ZP_07951047.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919370|gb|EFV40702.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 166

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS + LA+EE     F  S+ +   +      Y   R  +A I  L   Q++ GWV   A
Sbjct: 1   MSDQSLAKEEV----FVLSDSAREAIEHEKHHYEDPR--AASIEALKIVQKEHGWVPDGA 54

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A +LD+    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+
Sbjct: 55  IYAIAEVLDIPAADVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHINGYQGIQAALERKL 113

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + KP     DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 114 NIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPENVVELLEQYK 166


>gi|170068586|ref|XP_001868924.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
 gi|167864587|gb|EDS27970.1| NADH dehydrogenase flavoprotein 2, mitochondrial [Culex
           quinquefasciatus]
          Length = 170

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 1/139 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+EE+   V+ +++ YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 30  LFVHRDTPEDNPSIPFEFTEENKKRVSAILNIYPEGHKRGAMIPLLDLAQRQHGWLPISA 89

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA+IL +  +RV E+ATFYT F   P GT  H+QVC TTPC LRG ++++ VC+ K+
Sbjct: 90  MHKVADILGLPNMRVYEVATFYTMFMRKPTGT-YHIQVCTTTPCWLRGSDEVMNVCKKKL 148

Query: 121 HQKPLHRNSDGTLSWEEVE 139
              P     DG  +  E  
Sbjct: 149 GISPGETTKDGKFTISENR 167


>gi|302536172|ref|ZP_07288514.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
 gi|302445067|gb|EFL16883.1| NADH dehydrogenase subunit E [Streptomyces sp. C]
          Length = 245

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E       E+I RYP SR  SA++PLL   Q +EG+VSR  I   A +L +    V  +A
Sbjct: 22  ERLEADAKEIIGRYPDSR--SALLPLLHLTQSEEGFVSRTGIRFCAEVLGLTTAEVTAVA 79

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFYT ++  P G    V VC  T C + G + + +  +  +        +DG ++ E +E
Sbjct: 80  TFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFDELKQHLGVGNNETTADGKVTLEHIE 138

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AC  AP+VM+  + +++ TP+  + ++D    G+      G
Sbjct: 139 CNAACDYAPVVMVNWEFFDNQTPQSAKALVDDLLAGRPVEPTRG 182


>gi|320354159|ref|YP_004195498.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
 gi|320122661|gb|ADW18207.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS R    E  +P  F+F  +       +  RYP    +S ++P L   QEQEGW+S  A
Sbjct: 1   MSDRSQLIETGKP--FAFDAQRDAEFERLAKRYPT--RESLILPSLWLVQEQEGWISAEA 56

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A+ +      V E ATFYT + L P G + H+ VC T  C L G +++++  + ++
Sbjct: 57  MAYIADRIGTFASMVYEAATFYTMYNLQPKG-KYHICVCRTLSCYLLGKQEIVDYLQQEL 115

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             KP   ++DG  S EEVEC G C  AP+V +  + YE++  ++L+E++    
Sbjct: 116 GIKPGDVSADGEFSLEEVECLGHCGTAPVVQVNGEFYENMNVDKLKELLATLK 168


>gi|304398213|ref|ZP_07380087.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
 gi|304354079|gb|EFM18452.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. aB]
          Length = 171

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      +
Sbjct: 59  AINAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPSLLEQYQ 171


>gi|182436773|ref|YP_001824492.1| NADH dehydrogenase subunit E [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777368|ref|ZP_08236633.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465289|dbj|BAG19809.1| putative NADH dehydrogenase chain E [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657701|gb|EGE42547.1| NADH-quinone oxidoreductase, E subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 285

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 3/171 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P              EV++RYP SR  SA++PLL   Q +EG+VSR  +   A  LD+  
Sbjct: 19  PYPAEVRARLDADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCAETLDLTT 76

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFY+ ++  P G    V VC  T C + G + + +  +  +         DG 
Sbjct: 77  AEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGK 135

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 136 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186


>gi|157779398|gb|ABV71242.1| NADPH-dependent sulfur oxidoreductase A subunit [Thermococcus
           litoralis DSM 5473]
          Length = 154

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E I  Y P+   S++IPLL + QE  G++ R A+E ++  L +   RV  +ATFY QF+ 
Sbjct: 6   EYIYNYEPN--PSSLIPLLQKTQEIFGYLPREALEEISKYLKLPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G +  +++C  T C + G   + +  + ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLG-KYVIKICHGTACHVNGAVNISQAIKEEVGVEEGQTTQDGLITLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++MI    +  LTPE++ +II     G+
Sbjct: 123 PVIMINDKVFGKLTPEKVRKIIKNLKEGK 151


>gi|238062215|ref|ZP_04606924.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
 gi|237884026|gb|EEP72854.1| NADH-quinone oxidoreductase, E subunit [Micromonospora sp. ATCC
           39149]
          Length = 295

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+E++     E+I+RYP  R +SA++PLL   Q +EG+VS + +E  A +L +   +V  
Sbjct: 4   FTEQTRERAREIIARYPADRSRSALLPLLHLVQSEEGYVSPSGVEFCAEVLGLNKAQVGA 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  P G    V VC  T C + G +++ +     +        +DGT++ E 
Sbjct: 64  VATFYTMYKRKPTGD-YLVSVCTNTMCNVLGGQEVYDTLAEHLGVGHDETTADGTVTLEH 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            EC  AC   P++ +  D ++ + P+    +++   +G       G +
Sbjct: 123 AECLAACDYGPVMTVNYDFFDGVDPQTALGVVEELRSGGRPMPTRGAR 170


>gi|16130220|ref|NP_416788.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113657|ref|NP_708167.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 301]
 gi|26248672|ref|NP_754712.1| NADH dehydrogenase subunit E [Escherichia coli CFT073]
 gi|30063711|ref|NP_837882.1| NADH dehydrogenase subunit E [Shigella flexneri 2a str. 2457T]
 gi|74312803|ref|YP_311222.1| NADH dehydrogenase subunit E [Shigella sonnei Ss046]
 gi|82544763|ref|YP_408710.1| NADH dehydrogenase subunit E [Shigella boydii Sb227]
 gi|89109103|ref|AP_002883.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. W3110]
 gi|91211577|ref|YP_541563.1| NADH dehydrogenase subunit E [Escherichia coli UTI89]
 gi|110642489|ref|YP_670219.1| NADH dehydrogenase subunit E [Escherichia coli 536]
 gi|110806248|ref|YP_689768.1| NADH dehydrogenase subunit E [Shigella flexneri 5 str. 8401]
 gi|117624474|ref|YP_853387.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
 gi|157154944|ref|YP_001463628.1| NADH dehydrogenase subunit E [Escherichia coli E24377A]
 gi|157161773|ref|YP_001459091.1| NADH dehydrogenase subunit E [Escherichia coli HS]
 gi|170019406|ref|YP_001724360.1| NADH dehydrogenase subunit E [Escherichia coli ATCC 8739]
 gi|170081902|ref|YP_001731222.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. DH10B]
 gi|170683908|ref|YP_001744483.1| NADH dehydrogenase subunit E [Escherichia coli SMS-3-5]
 gi|170767591|ref|ZP_02902044.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
           TW07627]
 gi|187730819|ref|YP_001881106.1| NADH dehydrogenase subunit E [Shigella boydii CDC 3083-94]
 gi|188496197|ref|ZP_03003467.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
 gi|191170105|ref|ZP_03031659.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
 gi|193062229|ref|ZP_03043324.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
 gi|193068223|ref|ZP_03049187.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
 gi|194427174|ref|ZP_03059725.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
 gi|194433323|ref|ZP_03065603.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
 gi|194436177|ref|ZP_03068279.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
 gi|209919733|ref|YP_002293817.1| NADH dehydrogenase subunit E [Escherichia coli SE11]
 gi|215487498|ref|YP_002329929.1| NADH dehydrogenase subunit E [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218548266|ref|YP_002382057.1| NADH dehydrogenase subunit E [Escherichia fergusonii ATCC 35469]
 gi|218554841|ref|YP_002387754.1| NADH dehydrogenase subunit E [Escherichia coli IAI1]
 gi|218559198|ref|YP_002392111.1| NADH dehydrogenase subunit E [Escherichia coli S88]
 gi|218690445|ref|YP_002398657.1| NADH dehydrogenase subunit E [Escherichia coli ED1a]
 gi|218695884|ref|YP_002403551.1| NADH dehydrogenase subunit E [Escherichia coli 55989]
 gi|218700759|ref|YP_002408388.1| NADH dehydrogenase subunit E [Escherichia coli IAI39]
 gi|218705815|ref|YP_002413334.1| NADH dehydrogenase subunit E [Escherichia coli UMN026]
 gi|227887341|ref|ZP_04005146.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
 gi|237704759|ref|ZP_04535240.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901460|ref|YP_002927256.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
 gi|253772793|ref|YP_003035624.1| NADH dehydrogenase subunit E [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162294|ref|YP_003045402.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
 gi|256017559|ref|ZP_05431424.1| NADH dehydrogenase subunit E [Shigella sp. D9]
 gi|256022031|ref|ZP_05435896.1| NADH dehydrogenase subunit E [Escherichia sp. 4_1_40B]
 gi|260844872|ref|YP_003222650.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
           str. 12009]
 gi|260856329|ref|YP_003230220.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
           str. 11368]
 gi|260869008|ref|YP_003235410.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
           str. 11128]
 gi|293405751|ref|ZP_06649743.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
 gi|293410645|ref|ZP_06654221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
 gi|293446622|ref|ZP_06663044.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
 gi|297519442|ref|ZP_06937828.1| NADH dehydrogenase subunit E [Escherichia coli OP50]
 gi|298381434|ref|ZP_06991033.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
 gi|300818114|ref|ZP_07098326.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
 gi|300822156|ref|ZP_07102298.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
 gi|300896959|ref|ZP_07115440.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
 gi|300903670|ref|ZP_07121586.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
 gi|300918550|ref|ZP_07135140.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
 gi|300924544|ref|ZP_07140508.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
 gi|300931362|ref|ZP_07146693.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
 gi|300936850|ref|ZP_07151739.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
 gi|300948571|ref|ZP_07162664.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
 gi|300956455|ref|ZP_07168744.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
 gi|300981073|ref|ZP_07175345.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
 gi|300983380|ref|ZP_07176564.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
 gi|301024083|ref|ZP_07187797.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
 gi|301026955|ref|ZP_07190348.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
 gi|301049038|ref|ZP_07196023.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
 gi|301303256|ref|ZP_07209381.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
 gi|301328777|ref|ZP_07221825.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
 gi|301647618|ref|ZP_07247414.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
 gi|307138949|ref|ZP_07498305.1| NADH dehydrogenase subunit E [Escherichia coli H736]
 gi|307311155|ref|ZP_07590799.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
 gi|309793164|ref|ZP_07687592.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
 gi|312967583|ref|ZP_07781798.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
 gi|312973456|ref|ZP_07787628.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
 gi|331642923|ref|ZP_08344058.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
 gi|331647940|ref|ZP_08349032.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
 gi|331653727|ref|ZP_08354728.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
 gi|331658367|ref|ZP_08359329.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
 gi|331663800|ref|ZP_08364710.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
 gi|331668983|ref|ZP_08369831.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
 gi|331678231|ref|ZP_08378906.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
 gi|331683956|ref|ZP_08384552.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
 gi|332278569|ref|ZP_08390982.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
 gi|84028748|sp|P0AFD2|NUOE_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E; AltName: Full=NUO5
 gi|84028749|sp|P0AFD1|NUOE_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E; AltName: Full=NUO5
 gi|84028750|sp|P0AFD3|NUOE_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|26109077|gb|AAN81280.1|AE016763_239 NADH dehydrogenase I chain E [Escherichia coli CFT073]
 gi|431019|gb|AAA03536.1| NADH dehydrogenase [Escherichia coli]
 gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799646|dbj|BAA16114.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K12
           substr. W3110]
 gi|24052721|gb|AAN43874.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 301]
 gi|30041966|gb|AAP17692.1| NADH dehydrogenase I chain E [Shigella flexneri 2a str. 2457T]
 gi|73856280|gb|AAZ88987.1| NADH dehydrogenase I chain E [Shigella sonnei Ss046]
 gi|81246174|gb|ABB66882.1| NADH dehydrogenase I chain E [Shigella boydii Sb227]
 gi|91073151|gb|ABE08032.1| NADH dehydrogenase I chain E [Escherichia coli UTI89]
 gi|110344081|gb|ABG70318.1| NADH dehydrogenase I chain E [Escherichia coli 536]
 gi|110615796|gb|ABF04463.1| NADH dehydrogenase I chain E [Shigella flexneri 5 str. 8401]
 gi|115513598|gb|ABJ01673.1| NADH dehydrogenase subunit E [Escherichia coli APEC O1]
 gi|157067453|gb|ABV06708.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli HS]
 gi|157076974|gb|ABV16682.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E24377A]
 gi|169754334|gb|ACA77033.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli ATCC 8739]
 gi|169889737|gb|ACB03444.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123925|gb|EDS92856.1| NADH-quinone oxidoreductase, E subunit [Escherichia albertii
           TW07627]
 gi|170521626|gb|ACB19804.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli SMS-3-5]
 gi|187427811|gb|ACD07085.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii CDC
           3083-94]
 gi|188491396|gb|EDU66499.1| NADH-quinone oxidoreductase chain e [Escherichia coli 53638]
 gi|190909621|gb|EDV69206.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli F11]
 gi|192931895|gb|EDV84494.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E22]
 gi|192958502|gb|EDV88941.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E110019]
 gi|194414795|gb|EDX31066.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B171]
 gi|194418417|gb|EDX34506.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1012]
 gi|194424905|gb|EDX40890.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 101-1]
 gi|209912992|dbj|BAG78066.1| NADH dehydrogenase I chain E [Escherichia coli SE11]
 gi|215265570|emb|CAS09973.1| NADH: ubiquinone oxidoreductase, chain E [Escherichia coli O127:H6
           str. E2348/69]
 gi|218352616|emb|CAU98397.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 55989]
 gi|218355807|emb|CAQ88420.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
           ATCC 35469]
 gi|218361609|emb|CAQ99201.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI1]
 gi|218365967|emb|CAR03711.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli S88]
 gi|218370745|emb|CAR18558.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli IAI39]
 gi|218428009|emb|CAR08930.2| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli ED1a]
 gi|218432912|emb|CAR13806.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli UMN026]
 gi|222034041|emb|CAP76782.1| NadH-quinone oxidoreductase subunit E [Escherichia coli LF82]
 gi|226901125|gb|EEH87384.1| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835691|gb|EEJ46157.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli 83972]
 gi|238861869|gb|ACR63867.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli BW2952]
 gi|242377918|emb|CAQ32687.1| NADH:ubiquinone oxidoreductase, chain E, subunit of soluble NADH
           dehydrogenase fragment and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323837|gb|ACT28439.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974195|gb|ACT39866.1| NADH dehydrogenase subunit E [Escherichia coli B str. REL606]
 gi|253978362|gb|ACT44032.1| NADH dehydrogenase subunit E [Escherichia coli BL21(DE3)]
 gi|257754978|dbj|BAI26480.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O26:H11
           str. 11368]
 gi|257760019|dbj|BAI31516.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O103:H2
           str. 12009]
 gi|257765364|dbj|BAI36859.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli O111:H-
           str. 11128]
 gi|260448622|gb|ACX39044.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli DH1]
 gi|281179372|dbj|BAI55702.1| NADH dehydrogenase I chain E [Escherichia coli SE15]
 gi|281601726|gb|ADA74710.1| NADH-quinone oxidoreductase subunit E [Shigella flexneri 2002017]
 gi|284922273|emb|CBG35358.1| NADH-quinone oxidoreductase subunit E [Escherichia coli 042]
 gi|291323452|gb|EFE62880.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B088]
 gi|291427959|gb|EFF00986.1| NADH dehydrogenase subunit E [Escherichia coli FVEC1412]
 gi|291471113|gb|EFF13597.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B354]
 gi|294493972|gb|ADE92728.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli IHE3034]
 gi|298278876|gb|EFI20390.1| NADH dehydrogenase I subunit E [Escherichia coli FVEC1302]
 gi|299879502|gb|EFI87713.1| NADH dehydrogenase subunit E [Escherichia coli MS 196-1]
 gi|300299147|gb|EFJ55532.1| NADH dehydrogenase subunit E [Escherichia coli MS 185-1]
 gi|300307686|gb|EFJ62206.1| NADH dehydrogenase subunit E [Escherichia coli MS 200-1]
 gi|300316725|gb|EFJ66509.1| NADH dehydrogenase subunit E [Escherichia coli MS 175-1]
 gi|300359227|gb|EFJ75097.1| NADH dehydrogenase subunit E [Escherichia coli MS 198-1]
 gi|300396739|gb|EFJ80277.1| NADH dehydrogenase subunit E [Escherichia coli MS 69-1]
 gi|300404326|gb|EFJ87864.1| NADH dehydrogenase subunit E [Escherichia coli MS 84-1]
 gi|300408546|gb|EFJ92084.1| NADH dehydrogenase subunit E [Escherichia coli MS 45-1]
 gi|300414285|gb|EFJ97595.1| NADH dehydrogenase subunit E [Escherichia coli MS 115-1]
 gi|300419262|gb|EFK02573.1| NADH dehydrogenase subunit E [Escherichia coli MS 182-1]
 gi|300451919|gb|EFK15539.1| NADH dehydrogenase subunit E [Escherichia coli MS 116-1]
 gi|300458037|gb|EFK21530.1| NADH dehydrogenase subunit E [Escherichia coli MS 21-1]
 gi|300460824|gb|EFK24317.1| NADH dehydrogenase subunit E [Escherichia coli MS 187-1]
 gi|300525286|gb|EFK46355.1| NADH dehydrogenase subunit E [Escherichia coli MS 119-7]
 gi|300529258|gb|EFK50320.1| NADH dehydrogenase subunit E [Escherichia coli MS 107-1]
 gi|300841430|gb|EFK69190.1| NADH dehydrogenase subunit E [Escherichia coli MS 124-1]
 gi|300844839|gb|EFK72599.1| NADH dehydrogenase subunit E [Escherichia coli MS 78-1]
 gi|301074245|gb|EFK89051.1| NADH dehydrogenase subunit E [Escherichia coli MS 146-1]
 gi|306908661|gb|EFN39158.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli W]
 gi|307554347|gb|ADN47122.1| NADH dehydrogenase I chain E [Escherichia coli ABU 83972]
 gi|307626179|gb|ADN70483.1| NADH dehydrogenase subunit E [Escherichia coli UM146]
 gi|308123450|gb|EFO60712.1| NADH dehydrogenase subunit E [Escherichia coli MS 145-7]
 gi|309702597|emb|CBJ01925.1| NADH-quinone oxidoreductase subunit E [Escherichia coli ETEC
           H10407]
 gi|310332051|gb|EFP99286.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1827-70]
 gi|312287780|gb|EFR15685.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 2362-75]
 gi|312946903|gb|ADR27730.1| NADH dehydrogenase subunit E [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651108|gb|EFS15507.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2a str.
           2457T]
 gi|315061577|gb|ADT75904.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli W]
 gi|315136919|dbj|BAJ44078.1| NADH dehydrogenase subunit E [Escherichia coli DH1]
 gi|315255219|gb|EFU35187.1| NADH dehydrogenase subunit E [Escherichia coli MS 85-1]
 gi|315285915|gb|EFU45353.1| NADH dehydrogenase subunit E [Escherichia coli MS 110-3]
 gi|315298116|gb|EFU57385.1| NADH dehydrogenase subunit E [Escherichia coli MS 16-3]
 gi|315615554|gb|EFU96186.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 3431]
 gi|320177167|gb|EFW52179.1| NADH-ubiquinone oxidoreductase chain E [Shigella dysenteriae CDC
           74-1112]
 gi|320178742|gb|EFW53705.1| NADH-ubiquinone oxidoreductase chain E [Shigella boydii ATCC 9905]
 gi|320183380|gb|EFW58232.1| NADH-ubiquinone oxidoreductase chain E [Shigella flexneri CDC
           796-83]
 gi|320196152|gb|EFW70776.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli WV_060327]
 gi|320199873|gb|EFW74462.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli EC4100B]
 gi|323156435|gb|EFZ42590.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli EPECa14]
 gi|323161619|gb|EFZ47504.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli E128010]
 gi|323168545|gb|EFZ54225.1| NADH-quinone oxidoreductase, E subunit [Shigella sonnei 53G]
 gi|323171967|gb|EFZ57611.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli LT-68]
 gi|323176790|gb|EFZ62380.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1180]
 gi|323184396|gb|EFZ69772.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli 1357]
 gi|323187990|gb|EFZ73285.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli RN587/1]
 gi|323377843|gb|ADX50111.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli KO11]
 gi|323936575|gb|EGB32862.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli
           E1520]
 gi|323941018|gb|EGB37205.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli E482]
 gi|323944798|gb|EGB40864.1| respiratory-chain NADH dehydrogenase 24 kDa [Escherichia coli H120]
 gi|323952078|gb|EGB47952.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H252]
 gi|323956051|gb|EGB51804.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H263]
 gi|323961468|gb|EGB57078.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli H489]
 gi|323967726|gb|EGB63138.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli M863]
 gi|323973010|gb|EGB68204.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli TA007]
 gi|323977514|gb|EGB72600.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli TW10509]
 gi|324006665|gb|EGB75884.1| NADH dehydrogenase subunit E [Escherichia coli MS 57-2]
 gi|324013175|gb|EGB82394.1| NADH dehydrogenase subunit E [Escherichia coli MS 60-1]
 gi|324020881|gb|EGB90100.1| NADH dehydrogenase subunit E [Escherichia coli MS 117-3]
 gi|324117837|gb|EGC11736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia coli E1167]
 gi|325496680|gb|EGC94539.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia fergusonii
           ECD227]
 gi|327252555|gb|EGE64214.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli STEC_7v]
 gi|330912110|gb|EGH40620.1| NADH-ubiquinone oxidoreductase chain E [Escherichia coli AA86]
 gi|331039721|gb|EGI11941.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H736]
 gi|331043664|gb|EGI15802.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M605]
 gi|331048576|gb|EGI20652.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli M718]
 gi|331056615|gb|EGI28624.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA206]
 gi|331059599|gb|EGI31576.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA143]
 gi|331064177|gb|EGI36088.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli TA271]
 gi|331074691|gb|EGI46011.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H591]
 gi|331078908|gb|EGI50110.1| NADH-quinone oxidoreductase subunit E (NADHdehydrogenase I subunit
           E) (NDH-1 subunit E) (NUO5) [Escherichia coli H299]
 gi|332088415|gb|EGI93533.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 5216-82]
 gi|332090613|gb|EGI95709.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae
           155-74]
 gi|332093637|gb|EGI98695.1| NADH-quinone oxidoreductase, E subunit [Shigella boydii 3594-74]
 gi|332100921|gb|EGJ04267.1| NADH dehydrogenase subunit I E [Shigella sp. D9]
 gi|332344066|gb|AEE57400.1| NADH oxidoreductase NuoE [Escherichia coli UMNK88]
 gi|332754933|gb|EGJ85298.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 4343-70]
 gi|332755334|gb|EGJ85698.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-671]
 gi|332756245|gb|EGJ86596.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri 2747-71]
 gi|332766104|gb|EGJ96314.1| nuoE [Shigella flexneri 2930-71]
 gi|333001429|gb|EGK20997.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri VA-6]
 gi|333002028|gb|EGK21594.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-218]
 gi|333002652|gb|EGK22212.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-272]
 gi|333016346|gb|EGK35677.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-304]
 gi|333016536|gb|EGK35866.1| NADH-quinone oxidoreductase, E subunit [Shigella flexneri K-227]
          Length = 166

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|239929610|ref|ZP_04686563.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
 gi|291437934|ref|ZP_06577324.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
 gi|291340829|gb|EFE67785.1| NADH dehydrogenase subunit E [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EVI+RYP SR  SA++PLL   Q +EG V+R  ++  A++L +    V  +ATFYT +
Sbjct: 34  AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMQFCADVLGLTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 92  RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGETTDDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TPE  + ++D    G+      G
Sbjct: 151 YAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188


>gi|324112817|gb|EGC06793.1| respiratory-chain NADH dehydrogenase 24 kDa subunit protein
           [Escherichia fergusonii B253]
          Length = 166

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166


>gi|283832285|ref|ZP_06352026.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
           29220]
 gi|291071929|gb|EFE10038.1| NADH-quinone oxidoreductase, E subunit [Citrobacter youngae ATCC
           29220]
          Length = 166

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI  DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDDDTHAHLTPEGIPELLERYK 166


>gi|297159512|gb|ADI09224.1| NADH dehydrogenase subunit E [Streptomyces bingchenggensis BCW-1]
          Length = 255

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                EVI+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFY
Sbjct: 25  EADAEEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGVRFCAEVLGLTTAEVTAVATFY 82

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  
Sbjct: 83  TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEALQRHLGVGNGETTEDGKITLEHIECNA 141

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ T +  E ++D    G+      G
Sbjct: 142 ACDYAPVVMVNWEFFDNQTVDSAERMVDDLRAGRTVEPTRG 182


>gi|320009200|gb|ADW04050.1| NADH-quinone oxidoreductase, E subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 293

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                EVI+RYP SR  SA++PLL   Q +EG+VSR  +   A+ L +    V  +ATFY
Sbjct: 29  EADAKEVIARYPGSR--SALLPLLHLVQSEEGYVSRTGMAFCADQLGLTTAEVTAVATFY 86

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + +  +  +         DG ++ E +EC  
Sbjct: 87  TMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDRLKEHLGVGNDETTDDGKVTLEHIECNA 145

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 146 ACDFAPVVMVNWEFFDNQTPESATRLVDDLIAGRTVEPTRG 186


>gi|332883540|gb|EGK03823.1| hypothetical protein HMPREF9456_01890 [Dysgonomonas mossii DSM
           22836]
          Length = 174

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 2/161 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75
           + SE     +NE++S YP  + +SA++P+L   Q+    W+S   ++ VA IL++  I V
Sbjct: 11  NMSESLMARINELLSHYPADKKKSALLPVLHAVQDAHDNWLSLELMDKVAEILEITPIEV 70

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY+ F   P+  +   + C T  C LRG E L+E    K+  KP     DG  S 
Sbjct: 71  YEVVTFYSMFNQKPI-AKYMFEFCRTACCGLRGGENLMEYTCQKLGVKPGEITPDGMFSV 129

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             VEC GAC   PM+ +G + +E+L  E+++ +I+    G+
Sbjct: 130 VGVECLGACGYGPMLQLGDNYHENLNKEKIDTLIEDCKQGK 170


>gi|240169666|ref|ZP_04748325.1| NADH dehydrogenase subunit E [Mycobacterium kansasii ATCC 12478]
          Length = 248

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 17/210 (8%)

Query: 1   MSVRRLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRA 49
           M + RL     +P+ F       ++  E    +     E+I RYP  R  SA++PLL   
Sbjct: 1   MFI-RLGPPPEEPNQFVVEGAPQTYPPEVQARLEVDAKEIIGRYPDKR--SALLPLLHLV 57

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q ++ +++ A +E  A  L +    V  +A+FYT ++  P G    V VC  T C + G 
Sbjct: 58  QGEDSYLTPAGLEFCATQLGLTGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAIMGG 116

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + + E  +  +        +DGT++ + +EC  AC  AP+VM+  + +++ TPE   E++
Sbjct: 117 DAIFEELKEHLGIGNDETTADGTVTLQHIECNAACDYAPVVMVNWEFFDNQTPESACELV 176

Query: 170 DAFSTGQGDTIRPGPQID--RISSAPAGGL 197
           D+  TG       G  +   R +S    GL
Sbjct: 177 DSLRTGNPKEPTRGAPLCAFRETSRILAGL 206


>gi|315292242|gb|EFU51594.1| NADH dehydrogenase subunit E [Escherichia coli MS 153-1]
          Length = 166

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSLVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|220934166|ref|YP_002513065.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995476|gb|ACL72078.1| NADH-quinone oxidoreductase, E subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 168

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++     +++ + RYP  + QSAV+  L   Q + G++S   ++ VA  + M  I V E
Sbjct: 13  LNDHLREEIDDWLRRYPQDQRQSAVLGALRAVQHEHGYLSTEMMDAVAEYIGMPDIAVYE 72

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY+ F+L PVG R  + VC    CMLRG ++++E   NK+  K      DG    + 
Sbjct: 73  VASFYSMFELKPVG-RHTIAVCTNISCMLRGSDRIVEHIENKLGIKTGESTPDGKFYIKR 131

Query: 138 -VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             EC  AC  APM+ +    YE LTPER++EI+D  
Sbjct: 132 EEECLAACCGAPMMQVDHVYYEHLTPERVDEILDGL 167


>gi|82702224|ref|YP_411790.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
 gi|82410289|gb|ABB74398.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
          Length = 158

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + QSAV+  L  AQ+++GW++   ++ VA  L M  I V E
Sbjct: 2   LSAESLKKIDYELTKYPADQKQSAVMSALAIAQDEKGWLTTETMDFVAEYLGMPSIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT + L P+G +  + VC   PC L G  + +   R K+        +DG  + +E
Sbjct: 62  VATFYTMYNLQPIG-KYKITVCTNLPCALSGANEAVAHFREKLGIGFNETTADGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ ++++++++  S 
Sbjct: 121 GECMGACGDAPVLLVNNKRMCSFMSNDKIDQLLEDLSK 158


>gi|146299002|ref|YP_001193593.1| NADH-quinone oxidoreductase, E subunit [Flavobacterium johnsoniae
           UW101]
 gi|146153420|gb|ABQ04274.1| NADH dehydrogenase subunit E [Flavobacterium johnsoniae UW101]
          Length = 176

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVAN 66
           E +      + +E     +NE+IS YP  + +SA++P+L   Q+    W+S    + VA 
Sbjct: 2   ERKHYKQEINMTEALIARINELISHYPEGKQKSALLPVLHEVQDAHNNWLSIELQDKVAE 61

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           IL +  I V E+ TFYT F   P+G +   + C T+ C LRG E L++    K+  K   
Sbjct: 62  ILQIKPIEVYEVVTFYTMFNQKPIG-KYMFEFCQTSCCCLRGAEDLMDYTSEKLGIKMGE 120

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
              DG  +   VEC GAC  APM+ +G    E LT E++++II      +
Sbjct: 121 TTPDGMFTIAGVECLGACGYAPMMQLGDFYKEKLTEEKIDQIIADCRDDK 170


>gi|284034165|ref|YP_003384096.1| NADH-quinone oxidoreductase subunit E [Kribbella flavida DSM 17836]
 gi|283813458|gb|ADB35297.1| NADH-quinone oxidoreductase, E subunit [Kribbella flavida DSM
           17836]
          Length = 275

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 18/210 (8%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
                +       SE +   + E+ +RYP  R  SA++P+L   Q  EG V+   IE  A
Sbjct: 10  DKPVPYSTGDSKISETTIAEMRELAARYPVGR--SALLPMLHLVQSVEGRVTPEGIEACA 67

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFYT ++  PVG   HV VC  T C + G + + E  +  +     
Sbjct: 68  DVLGLTGAEVSAVATFYTMYKRRPVGD-YHVGVCTNTLCAVMGGDLIFERLKQHLDVGND 126

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG---------- 175
               DG ++ E +EC  AC  AP++M+  + ++D+TPE   +++D    G          
Sbjct: 127 ETTEDGKITLEHIECNAACDYAPVMMVNWEFFDDMTPESATQLVDDLRDGTEVKSPRGAT 186

Query: 176 -----QGDTIRPGPQIDRISSAPAGGLTSL 200
                + + +  G    R    P GG  +L
Sbjct: 187 ICTWREAERVLAGFPDGRADEGPTGGKATL 216


>gi|308187601|ref|YP_003931732.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
 gi|308058111|gb|ADO10283.1| NADH dehydrogenase I chain E [Pantoea vagans C9-1]
          Length = 171

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      +
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSALEQQ 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIPGLLEQYQ 171


>gi|293415578|ref|ZP_06658221.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
 gi|291433226|gb|EFF06205.1| NADH-quinone oxidoreductase subunit E [Escherichia coli B185]
          Length = 166

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            +  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HDNQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|146312471|ref|YP_001177545.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
 gi|145319347|gb|ABP61494.1| NADH dehydrogenase subunit E [Enterobacter sp. 638]
          Length = 166

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAERAAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP 
Sbjct: 60  EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLDIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + ++++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIPDLLEQYK 166


>gi|329935993|ref|ZP_08285793.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
           M045]
 gi|329304471|gb|EGG48349.1| NADH dehydrogenase subunit NuoE [Streptomyces griseoaurantiacus
           M045]
          Length = 298

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P              E+I+RYP SR  SA++P+L   Q +EG+V+R  +   A +L + 
Sbjct: 19  PPYPDDVRARLERDAREIIARYPDSR--SALLPMLHLVQSEEGYVTRTGMRFCAELLGLT 76

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+ ++  P G    V VC  T C + G + +    +  +         DG
Sbjct: 77  TAEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIYSALQEHLGVGNGETTDDG 135

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            ++ E +EC  AC  AP+VM+  + +++ T E  + ++D    G   +   G
Sbjct: 136 KVTLEHIECNAACDFAPVVMVNWEFFDNQTVESAKRLVDELREGAEVSPTRG 187


>gi|397902|emb|CAA48364.1| NADH dehydrogenase I, subunit nuoE [Escherichia coli]
          Length = 166

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      V   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAVEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|303238582|ref|ZP_07325116.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302593980|gb|EFL63694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 181

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 3/172 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +  +P    F +E    +   I     +R   A+I +L +AQE  G++ R     VA  L
Sbjct: 8   DVMKPVEREFPKEKYDELGAFIDNMETTR--GALIEILHKAQEIFGYLPRDVQLYVARKL 65

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  + +FY+ F   P G +  + VC  T C +RG +K++E  ++++  +     
Sbjct: 66  GIPGAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGSDKILEKFKDRLGIESNETT 124

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
            D   + ++V C GAC  AP+VM+    Y  +  E ++ II+ +   +   I
Sbjct: 125 EDSLFTIKDVRCIGACGLAPVVMVDGKVYGRVKEEDVDNIINEYRGKETKNI 176


>gi|120402879|ref|YP_952708.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
 gi|119955697|gb|ABM12702.1| NADH dehydrogenase subunit E [Mycobacterium vanbaalenii PYR-1]
          Length = 253

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 25/203 (12%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             +E  A     +I RYP SR  SA++PLL   Q ++G+++ A I   A  L + +  V 
Sbjct: 27  EVTERLAADAATIIGRYPQSR--SALLPLLHLVQAEDGYLTPAGIAFCAGQLGLTHAEVT 84

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFY+ ++  P G    V VC  T C + G + ++E   + +   P    +DGT++ E
Sbjct: 85  AVATFYSMYRREPTGE-YLVGVCTNTLCAVMGGDAILESLESHLDIAPGQTTADGTITLE 143

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR--------------- 181
            VEC  AC  AP+VM+  D +++ TP  + +++D+  +G+  T                 
Sbjct: 144 HVECNAACDYAPVVMVNWDFFDNQTPSSVRDLVDSLRSGEKPTPSRSGALCTFRETARIL 203

Query: 182 -----PG--PQIDRISSAPAGGL 197
                PG  P   R+ +A   GL
Sbjct: 204 AGLSNPGDAPDAGRVGAATLAGL 226


>gi|323718237|gb|EGB27417.1| hypothetical protein TMMG_02284 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 244

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 17/210 (8%)

Query: 1   MSVRRLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRA 49
           M + RL     +P+ F       S+  +    +     E+I RYP  R  SA++PLL   
Sbjct: 1   MFI-RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRR--SALLPLLHLV 57

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q ++ +++ A +   A+ L +    V  +A+FYT ++  P G    V VC  T C + G 
Sbjct: 58  QGEDSYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGG 116

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + + +  +  +        SDG ++ + +EC  AC  AP+VM+  + +++ TPE   E++
Sbjct: 117 DAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELV 176

Query: 170 DAFSTGQGDTIRPG-PQID-RISSAPAGGL 197
           D+  +        G P    R +S    GL
Sbjct: 177 DSLRSDTPKAPTRGAPLCGFRQTSRILAGL 206


>gi|302393030|ref|YP_003828850.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
 gi|302205107|gb|ADL13785.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    + ++++ Y   +    +IP+L   QE+ G++ +  ++ ++  L ++  ++  + 
Sbjct: 13  EEYLAPLRDILAGYKMKKK--NLIPILQAIQEEYGYLPQQVLKELSENLGVSLSKIYGVT 70

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L+P G    ++VC  T C +RG EK++E  + ++         D   + E V 
Sbjct: 71  TFYSQFHLNPRGE-NVIRVCMGTACHVRGGEKILEKIQEELGIDDGETTEDLKFTLESVA 129

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++MI  DT+  LTP+++ EI+  +
Sbjct: 130 CIGACGLAPVIMINDDTHGRLTPDQVPEILAEY 162


>gi|237748887|ref|ZP_04579367.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
 gi|229380249|gb|EEO30340.1| NADH dehydrogenase subunit I E [Oxalobacter formigenes OXCC13]
          Length = 159

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SEES   ++  + ++PP++ +SA I  L  AQ+++GW+S   I+ VAN L +  I V
Sbjct: 1   MLLSEESYRKIDRELEKFPPTKKRSAAIAALTVAQDEKGWLSPDVIKEVANYLGLPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A+FY+ F  SPVG +  + VC   PC + G ++     R K+  +      DG  + 
Sbjct: 61  GEVASFYSMFNTSPVG-KYKIAVCSNLPCEMTGSDQAAAYLRQKLGIEFGETTPDGLFTL 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
              EC GAC + P++M+     +  +T ++++ +++   
Sbjct: 120 VASECMGACGDGPVIMVNNKNMHMRMTNDKIDRLLEELK 158


>gi|323141627|ref|ZP_08076509.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
 gi|322413892|gb|EFY04729.1| putative NDH-1 subunit E [Phascolarctobacterium sp. YIT 12067]
          Length = 169

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++ ++ +Y     +  +IP+L   Q    ++ +  +E +A+        +  + TF
Sbjct: 21  EKQRIDAILEKYAD--VKGPLIPILQEVQNLYNYLPKDVLEYIADKTGTPISEIYGVVTF 78

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ F L+P G R  ++VC  T C +RG + +++   N++  K  H   D   + E V C 
Sbjct: 79  YSLFHLNPRG-RNVIRVCQGTACHVRGGKTILQALENQLGIKAGHTTDDLRFTLETVACI 137

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP++ I  DT+  LT ++L  I+  + 
Sbjct: 138 GACGLAPVMQINDDTHGRLTTDKLAGILARYK 169


>gi|317048936|ref|YP_004116584.1| NADH-quinone oxidoreductase subunit E [Pantoea sp. At-9b]
 gi|316950553|gb|ADU70028.1| NADH-quinone oxidoreductase, E subunit [Pantoea sp. At-9b]
          Length = 171

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +++A +   P+  F  SE     +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQKIAIQTIDPNEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +H KP     DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LHIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIATLLEQYQ 171


>gi|17546777|ref|NP_520179.1| NADH dehydrogenase subunit E [Ralstonia solanacearum GMI1000]
 gi|17429077|emb|CAD15765.1| probable nadh dehydrogenaseI(chain e) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|299066337|emb|CBJ37521.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CMR15]
          Length = 167

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLTVCTNLPCALSGGERAADYLKQKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I     
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLKA 158


>gi|157144784|ref|YP_001452103.1| NADH dehydrogenase subunit E [Citrobacter koseri ATCC BAA-895]
 gi|157081989|gb|ABV11667.1| hypothetical protein CKO_00511 [Citrobacter koseri ATCC BAA-895]
          Length = 166

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166


>gi|237732316|ref|ZP_04562797.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
 gi|226907855|gb|EEH93773.1| NADH dehydrogenase subunit I E [Citrobacter sp. 30_2]
          Length = 166

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEGIPELLERYK 166


>gi|320095552|ref|ZP_08027216.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977530|gb|EFW09209.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 233

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 21/206 (10%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            S++ +    +     ++I+RYP    +SA++P+L   Q  +G+VS   I++++ ILD+ 
Sbjct: 1   MSYTPDVEARLRADSAQIIARYPEGHSRSALLPMLHLVQSVDGYVSADGIDLISRILDLP 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFYTQ++  P G    V VC    C + G +++ E    K+       +  G
Sbjct: 61  RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWERVSAKVGVGSDETSESG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI----- 186
            ++ E +EC  AC  AP+VM+  + +++ TPE    +ID    G+      GP +     
Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESALALIDDIEAGRDIHPTRGPAVAPAFK 179

Query: 187 -----------DRISSAPAGGLTSLL 201
                       R    P+ G  +LL
Sbjct: 180 ENERLLAGFPDGRADEGPSAGPATLL 205


>gi|191166488|ref|ZP_03028318.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
 gi|190903448|gb|EDV63167.1| NADH-quinone oxidoreductase, E subunit [Escherichia coli B7A]
          Length = 166

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMYHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|154498759|ref|ZP_02037137.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
           29799]
 gi|150272149|gb|EDM99353.1| hypothetical protein BACCAP_02750 [Bacteroides capillosus ATCC
           29799]
          Length = 164

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            ++ + E    + +VI+ +       + +P+L  AQE  G++      ++A  LD+    
Sbjct: 9   PYNGTPEQEERLRQVIAEHKG--QPGSTMPVLQAAQEIFGYLPEEVQIMIAEGLDIPLSE 66

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +A+FY QF ++P G R  + VC  T C ++G   ++     K+  +P     DG  S
Sbjct: 67  VYGVASFYAQFSMNPKG-RYQISVCLGTACYVKGAADILAAVEKKLGIRPGSITPDGKFS 125

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +   C GAC  AP++M+G D Y  LTP+++  I+D +
Sbjct: 126 LDACRCVGACGLAPVMMVGSDVYGRLTPDQVGPILDKY 163


>gi|313836204|gb|EFS73918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA2]
 gi|314927639|gb|EFS91470.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL044PA1]
 gi|314971362|gb|EFT15460.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA3]
 gi|328906299|gb|EGG26074.1| NADH dehydrogenase subunit E [Propionibacterium sp. P08]
          Length = 260

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +    S +  E +   + ++ SRYP  R  SA++P+L   Q  +G VS   IE  A +L 
Sbjct: 28  DQSDRSTNIDEHTIEEMRQIASRYPDPR--SALLPILHLVQSVDGRVSPVGIETAAEVLG 85

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   +V  +ATFYT ++  P G    + VC T  C + G E+++     K+  K      
Sbjct: 86  ITTAQVSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGETTP 144

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI--- 186
           DG  S E VEC  AC  AP++M+  +  +++TP R EEI+DA +  +      G +I   
Sbjct: 145 DGKFSLEGVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDALARDEEVHSTRGAKITSW 204

Query: 187 ------------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
                        R    P+ G  SL      K+   K  D
Sbjct: 205 REAERVLAGFPDGRADEGPSAGEASLRGVRLAKQNGWKAPD 245


>gi|254382439|ref|ZP_04997798.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
 gi|194341343|gb|EDX22309.1| NADH dehydrogenase subunit E [Streptomyces sp. Mg1]
          Length = 279

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 17  SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            F  E    +     EVI+RYP SR  SA++PLL   Q +EG+VSR  I   A +L +  
Sbjct: 46  DFPAEVRARLEADAREVIARYPDSR--SALLPLLHLTQSEEGYVSRTGIRFCAEVLGLTT 103

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT ++  P G    V VC  T C + G + + E  +  +         DG 
Sbjct: 104 AEVTAVATFYTMYRRGPSGD-YQVGVCTNTLCAVMGGDAIFEELKEHLGVGNNETTPDGK 162

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ TP+  + ++D    G+      G
Sbjct: 163 VTLEHIECNAACDYAPVVMVNWEFFDNQTPQSAKAMVDDLLAGRPVAPTRG 213


>gi|153814129|ref|ZP_01966797.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
 gi|317499934|ref|ZP_07958170.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087843|ref|ZP_08336768.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848525|gb|EDK25443.1| hypothetical protein RUMTOR_00338 [Ruminococcus torques ATCC 27756]
 gi|316898651|gb|EFV20686.1| NADH dehydrogenase 24 kDa subunit [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409538|gb|EGG88979.1| hypothetical protein HMPREF1025_00351 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E+     FS ++E    + +VI      +   A++P+L +AQ+  G++     +++++  
Sbjct: 3   EKKATVPFSGTKEQEEALMKVIHELKDEK--GALMPILQKAQDIYGYLPIEVQKMISDET 60

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +   ++  +ATFY+QF LSP G +  + VC  T C ++G   +      K+        
Sbjct: 61  GIPMEKIYGVATFYSQFTLSPKG-KYRISVCLGTACYVKGSGDIYNALMEKLGIVGGECT 119

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            DG  S +   C GAC  AP++MI  + Y  LT + L++I+  +
Sbjct: 120 PDGKFSLDACRCVGACGLAPVMMINDEVYGRLTVDDLDDILAKY 163


>gi|152971213|ref|YP_001336322.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579544|ref|YP_002237327.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
 gi|238895802|ref|YP_002920538.1| NADH dehydrogenase subunit E [Klebsiella pneumoniae NTUH-K2044]
 gi|262043325|ref|ZP_06016454.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934257|ref|YP_003438316.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
 gi|290508460|ref|ZP_06547831.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
 gi|330003559|ref|ZP_08304674.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
 gi|150956062|gb|ABR78092.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206568602|gb|ACI10378.1| NADH-quinone oxidoreductase, E subunit [Klebsiella pneumoniae 342]
 gi|238548120|dbj|BAH64471.1| ATP synthase subunit E [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039349|gb|EEW40491.1| NADH-quinone oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888986|gb|ADC57304.1| NADH-quinone oxidoreductase, E subunit [Klebsiella variicola At-22]
 gi|289777854|gb|EFD85851.1| NADH-quinone oxidoreductase subunit E [Klebsiella sp. 1_1_55]
 gi|328536899|gb|EGF63198.1| NDH-1 subunit E [Klebsiella sp. MS 92-3]
          Length = 166

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + ++++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166


>gi|15610285|ref|NP_217665.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Rv]
 gi|15842725|ref|NP_337762.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CDC1551]
 gi|31794325|ref|NP_856818.1| NADH dehydrogenase subunit E [Mycobacterium bovis AF2122/97]
 gi|121639032|ref|YP_979256.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663004|ref|YP_001284527.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
 gi|148824343|ref|YP_001289097.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis F11]
 gi|215405147|ref|ZP_03417328.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 02_1987]
 gi|215413016|ref|ZP_03421717.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 94_M4241A]
 gi|215428606|ref|ZP_03426525.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T92]
 gi|215432108|ref|ZP_03430027.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|215447439|ref|ZP_03434191.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|218754929|ref|ZP_03533725.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis GM 1503]
 gi|219559195|ref|ZP_03538271.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T17]
 gi|224991524|ref|YP_002646213.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800183|ref|YP_003033184.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233768|ref|ZP_04927093.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis C]
 gi|254365774|ref|ZP_04981819.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis str. Haarlem]
 gi|254552240|ref|ZP_05142687.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188190|ref|ZP_05765664.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis CPHL_A]
 gi|260202295|ref|ZP_05769786.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T46]
 gi|260206488|ref|ZP_05773979.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis K85]
 gi|289444713|ref|ZP_06434457.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T46]
 gi|289448829|ref|ZP_06438573.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555422|ref|ZP_06444632.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           605]
 gi|289571360|ref|ZP_06451587.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T17]
 gi|289575861|ref|ZP_06456088.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           K85]
 gi|289746958|ref|ZP_06506336.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
           02_1987]
 gi|289751827|ref|ZP_06511205.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T92]
 gi|289755268|ref|ZP_06514646.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|289759279|ref|ZP_06518657.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|289763332|ref|ZP_06522710.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis GM 1503]
 gi|294993128|ref|ZP_06798819.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis 210]
 gi|297635792|ref|ZP_06953572.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN 4207]
 gi|297732789|ref|ZP_06961907.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN R506]
 gi|298526623|ref|ZP_07014032.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis 94_M4241A]
 gi|306777466|ref|ZP_07415803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu001]
 gi|306782192|ref|ZP_07420529.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu002]
 gi|306786012|ref|ZP_07424334.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790377|ref|ZP_07428699.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu004]
 gi|306799102|ref|ZP_07437404.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu006]
 gi|306804946|ref|ZP_07441614.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809135|ref|ZP_07445803.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu007]
 gi|306969237|ref|ZP_07481898.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu009]
 gi|306973584|ref|ZP_07486245.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu010]
 gi|307081293|ref|ZP_07490463.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu011]
 gi|307085895|ref|ZP_07495008.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu012]
 gi|313660122|ref|ZP_07817002.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis KZN V2475]
 gi|54037921|sp|P65574|NUOE_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|54041672|sp|P65573|NUOE_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|1781219|emb|CAB06290.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN E) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883047|gb|AAK47576.1| NADH dehydrogenase I, E subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619921|emb|CAD95265.1| PROBABLE NADH DEHYDROGENASE I (CHAIN E) NUOE (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN E) [Mycobacterium bovis AF2122/97]
 gi|121494680|emb|CAL73161.1| Probable NADH dehydrogenase I (chain E) nuoE [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599297|gb|EAY58401.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis C]
 gi|134151287|gb|EBA43332.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507156|gb|ABQ74965.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis H37Ra]
 gi|148722870|gb|ABR07495.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis F11]
 gi|224774639|dbj|BAH27445.1| NADH dehydrogenase subunit E [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321686|gb|ACT26289.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417632|gb|EFD14872.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T46]
 gi|289421787|gb|EFD18988.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440054|gb|EFD22547.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           605]
 gi|289540292|gb|EFD44870.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           K85]
 gi|289545114|gb|EFD48762.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T17]
 gi|289687486|gb|EFD54974.1| NADH-quinone oxidoreductase subunit E [Mycobacterium tuberculosis
           02_1987]
 gi|289692414|gb|EFD59843.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           T92]
 gi|289695855|gb|EFD63284.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis EAS054]
 gi|289710838|gb|EFD74854.1| NADH dehydrogenase I (chain E) nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis GM 1503]
 gi|289714843|gb|EFD78855.1| NADH dehydrogenase subunit E [Mycobacterium tuberculosis T85]
 gi|298496417|gb|EFI31711.1| NADH dehydrogenase I chain E nuoE (NADH-ubiquinone oxidoreductase
           chain E) [Mycobacterium tuberculosis 94_M4241A]
 gi|308214178|gb|EFO73577.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu001]
 gi|308324953|gb|EFP13804.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu002]
 gi|308329369|gb|EFP18220.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333198|gb|EFP22049.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu004]
 gi|308340529|gb|EFP29380.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344469|gb|EFP33320.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348465|gb|EFP37316.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu008]
 gi|308353095|gb|EFP41946.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu009]
 gi|308357068|gb|EFP45919.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu010]
 gi|308361022|gb|EFP49873.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364630|gb|EFP53481.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           SUMu012]
 gi|326902627|gb|EGE49560.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis
           W-148]
 gi|328459920|gb|AEB05343.1| NADH dehydrogenase subunit I E nuoE [Mycobacterium tuberculosis KZN
           4207]
          Length = 252

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P+ F       S+  +    +     E+I RYP  R  SA++PLL   Q ++
Sbjct: 12  RLGPPPDEPNQFVVEGAPRSYPPDVLARLEVDAKEIIGRYPDRR--SALLPLLHLVQGED 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +   A+ L +    V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGE-YLVGVCTNTLCAVMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +        SDG ++ + +EC  AC  AP+VM+  + +++ TPE   E++D+  
Sbjct: 129 DRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLR 188

Query: 174 TGQGDTIRPG-PQID-RISSAPAGGL 197
           +        G P    R +S    GL
Sbjct: 189 SDTPKAPTRGAPLCGFRQTSRILAGL 214


>gi|302559103|ref|ZP_07311445.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
 gi|302476721|gb|EFL39814.1| NADH dehydrogenase I, E subunit [Streptomyces griseoflavus Tu4000]
          Length = 286

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             EVI+RYP SR  SA++PLL   Q +EG V+R  +   A++L +    V  +ATFY+ +
Sbjct: 34  AREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCADVLGLTTAEVTAVATFYSMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 92  RRRPSGD-YQVGVCTNTLCAVMGGDAIFEELQEHLGVGNGGTTDDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TPE  + ++D    G+      G
Sbjct: 151 FAPVVMVNWEFFDNQTPESAKRMVDDLRAGRPVAPTRG 188


>gi|295837121|ref|ZP_06824054.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
 gi|197697231|gb|EDY44164.1| NADH dehydrogenase I, E subunit [Streptomyces sp. SPB74]
          Length = 286

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +    V  +ATFY
Sbjct: 25  EADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTTAEVNAVATFY 82

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  
Sbjct: 83  TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLGVGNDETTEDGKVTLEHIECNA 141

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 142 ACDFAPVVMVNWEFFDNQTPESAVRLVDELRAGREVEPTRG 182


>gi|158319327|ref|YP_001511834.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158139526|gb|ABW17838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 170

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +   S +    +  ++S+Y     + ++I +L   QE   ++   A+  ++    +   +
Sbjct: 12  AMEISAQDEDKLKSILSKYEG--KKGSLISILQDVQEYYNYLPMDALNYISVETGIKPAK 69

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFYTQF+L PVG +  + +C  T C + G + + E  + ++H +      D   +
Sbjct: 70  IHGVATFYTQFRLKPVGEK-LIMLCQGTACHVNGSKAVEEAIKEELHIQDGETTEDNLFT 128

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
              V C G C  +P++MI  DTY +LTPE+++ II    + Q
Sbjct: 129 LINVACLGCCSLSPVMMINDDTYGNLTPEKVKSIIREIKSAQ 170


>gi|253689145|ref|YP_003018335.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755723|gb|ACT13799.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 171

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M    ++E     ++ F  S+     +      Y  +R  +A I  L   Q++ GWV   
Sbjct: 1   MPDHNISERNISDNNVFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K
Sbjct: 59  AINAIADVLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGYQGVQAALERK 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  KP     DG  +     C G C   P +MI  DT+  +TPE +E +++ + 
Sbjct: 118 LSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLLEQYQ 171


>gi|329944206|ref|ZP_08292465.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530936|gb|EGF57792.1| NADH dehydrogenase subunit E [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 256

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +I+RYP  + +SA+IP+L   Q  +G+VS A I + A  L +    V  +ATFY+QF
Sbjct: 48  IERIIARYPAGKERSALIPMLHLFQSVDGYVSPAGIALCAARLGLERAEVSAVATFYSQF 107

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P GT  HV VC    C + G +++               + DGT+S E +EC  AC 
Sbjct: 108 RRHPAGT-YHVGVCTNALCAVMGGDEIWSAVTEHTGLGAEETSEDGTISLERIECNAACD 166

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLT 198
            AP+VM+  + +++ TP+    +I A   G+      GP       + +R+ +    G T
Sbjct: 167 YAPVVMVNWEFFDNQTPDSAVAMIKALERGEDVAPTRGPETVPTFRENERLLAGFEDGRT 226


>gi|297201627|ref|ZP_06919024.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
 gi|197711002|gb|EDY55036.1| NADH dehydrogenase subunit E [Streptomyces sviceus ATCC 29083]
          Length = 293

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E+I+RYP SR  SA++PLL   Q +EG V+R  +   A++L++    V  +ATFYT +
Sbjct: 34  AREIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMRFCADVLELTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + +    +  +         DG ++ E +EC  AC 
Sbjct: 92  RRKPSGD-YQVGVCTNTLCAVMGGDAIFTELQEHLGVGNGETTDDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TP   + ++D    G+      G
Sbjct: 151 FAPVVMVNWEFFDNQTPATAKRLVDDLRAGRPVEPTRG 188


>gi|187929289|ref|YP_001899776.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12J]
 gi|187726179|gb|ACD27344.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12J]
          Length = 167

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I    +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158


>gi|332669453|ref|YP_004452461.1| NADH-quinone oxidoreductase subunit E [Cellulomonas fimi ATCC 484]
 gi|332338491|gb|AEE45074.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas fimi ATCC 484]
          Length = 308

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 1   MSVRRLAEEEFQPSS--FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEG 54
           MSV  +       ++   +F EE+   ++    ++ +RYP  R  SA++PLL   Q ++G
Sbjct: 1   MSVEEIGGARVPGATHRTAFDEETRARLSADAAQIKARYPQER--SALLPLLHLVQSEDG 58

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           +VS   I   A  L +    V  +ATFYTQ++  P G    V VC  T C + G + + E
Sbjct: 59  YVSPRGIAFCAAELGLTTAEVSAVATFYTQYKRHPNGD-YTVGVCTNTLCAVMGGDAIWE 117

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
              + +        +DG+++ E VEC  AC  AP+VM+  + +++ TP+   E++DA   
Sbjct: 118 ELSDHLGVGHDETTADGSITLERVECNAACDYAPVVMVNWEFFDNQTPDSAREVVDALRQ 177

Query: 175 GQGDTIRPG 183
           G       G
Sbjct: 178 GAPVAPTRG 186


>gi|188584738|ref|YP_001916283.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349425|gb|ACB83695.1| NADH-quinone oxidoreductase, E subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 162

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    + E++++Y   +   A+I  L + QE  G++    ++ VA   DM   +V  +A
Sbjct: 12  KKEEQQLEEILAQYKNEK--GALITALQKVQEFYGYLPEEGMQKVAEAFDMPESKVFGVA 69

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G    ++VC  T C +RG EK++     +++ +P     D   + E V 
Sbjct: 70  TFYAQFHLQPRGEW-VIRVCTGTACHVRGAEKIMNKLIEELNIEPGETTEDLKFTLEPVA 128

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C G C  AP++M+  +T+  L P+++ EI+D + 
Sbjct: 129 CIGCCGLAPVIMVNDNTHGRLVPDQIPEILDKYK 162


>gi|300703646|ref|YP_003745248.1| NADH-quinone oxidoreductase subunit e [Ralstonia solanacearum
           CFBP2957]
 gi|299071309|emb|CBJ42627.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           CFBP2957]
          Length = 167

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I     
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158


>gi|167761223|ref|ZP_02433350.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
 gi|167660889|gb|EDS05019.1| hypothetical protein CLOSCI_03628 [Clostridium scindens ATCC 35704]
          Length = 164

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
               F+ ++E    + EVI      +   +++P+L RAQ+  G++     ++++N   + 
Sbjct: 6   STVQFNGTKEQEKELLEVIHELKDEK--GSLMPILQRAQDIYGYLPIEVQKIISNETGIP 63

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY+QF L+P G R  + VC  T C ++G   +      K+         DG
Sbjct: 64  LEKIYGVVTFYSQFNLNPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDG 122

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             S +   C GAC  AP++M+  + Y  LT + +++I+  +
Sbjct: 123 KFSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163


>gi|50843382|ref|YP_056609.1| NADH dehydrogenase subunit E [Propionibacterium acnes KPA171202]
 gi|289425625|ref|ZP_06427397.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK187]
 gi|289426980|ref|ZP_06428699.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           J165]
 gi|295131456|ref|YP_003582119.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK137]
 gi|50840984|gb|AAT83651.1| NADH dehydrogenase I chain E [Propionibacterium acnes KPA171202]
 gi|289153926|gb|EFD02619.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK187]
 gi|289159802|gb|EFD07987.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           J165]
 gi|291375165|gb|ADD99019.1| NADH-quinone oxidoreductase, E subunit [Propionibacterium acnes
           SK137]
 gi|313763288|gb|EFS34652.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA1]
 gi|313773334|gb|EFS39300.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL074PA1]
 gi|313793604|gb|EFS41644.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA1]
 gi|313802885|gb|EFS44098.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA2]
 gi|313806331|gb|EFS44847.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA2]
 gi|313810763|gb|EFS48477.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA1]
 gi|313814972|gb|EFS52686.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA1]
 gi|313819442|gb|EFS57156.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA2]
 gi|313821248|gb|EFS58962.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA1]
 gi|313822297|gb|EFS60011.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA2]
 gi|313826145|gb|EFS63859.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA1]
 gi|313829366|gb|EFS67080.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL063PA2]
 gi|313831074|gb|EFS68788.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL007PA1]
 gi|313833204|gb|EFS70918.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL056PA1]
 gi|313838153|gb|EFS75867.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL086PA1]
 gi|314916742|gb|EFS80573.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA4]
 gi|314919132|gb|EFS82963.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA1]
 gi|314921212|gb|EFS85043.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA3]
 gi|314925994|gb|EFS89825.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL036PA3]
 gi|314930360|gb|EFS94191.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL067PA1]
 gi|314956143|gb|EFT00539.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA1]
 gi|314959676|gb|EFT03778.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA1]
 gi|314962250|gb|EFT06351.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA2]
 gi|314963236|gb|EFT07336.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA1]
 gi|314969779|gb|EFT13877.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL037PA1]
 gi|314973942|gb|EFT18038.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA1]
 gi|314976870|gb|EFT20965.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL045PA1]
 gi|314979335|gb|EFT23429.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA2]
 gi|314984992|gb|EFT29084.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA1]
 gi|314986333|gb|EFT30425.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA2]
 gi|314988570|gb|EFT32661.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL005PA3]
 gi|315079687|gb|EFT51675.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL053PA2]
 gi|315081015|gb|EFT52991.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL078PA1]
 gi|315083922|gb|EFT55898.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL027PA2]
 gi|315085059|gb|EFT57035.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL002PA3]
 gi|315089488|gb|EFT61464.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL072PA1]
 gi|315097693|gb|EFT69669.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL038PA1]
 gi|315098100|gb|EFT70076.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL059PA2]
 gi|315102682|gb|EFT74658.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL046PA1]
 gi|315107938|gb|EFT79914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA1]
 gi|315108824|gb|EFT80800.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL030PA2]
 gi|327325713|gb|EGE67510.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL096PA3]
 gi|327330839|gb|EGE72584.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL096PA2]
 gi|327442868|gb|EGE89522.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA2]
 gi|327445260|gb|EGE91914.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL043PA1]
 gi|327447754|gb|EGE94408.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL013PA2]
 gi|327451635|gb|EGE98289.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA3]
 gi|327452288|gb|EGE98942.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL083PA2]
 gi|327452505|gb|EGE99159.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL092PA1]
 gi|328752121|gb|EGF65737.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA2]
 gi|328755065|gb|EGF68681.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL020PA1]
 gi|328757013|gb|EGF70629.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL087PA1]
 gi|328761549|gb|EGF75067.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL099PA1]
 gi|332676325|gb|AEE73141.1| NADH-quinone oxidoreductase subunit E [Propionibacterium acnes 266]
          Length = 261

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G    + VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +  +      G +I        
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAER 209

Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
                   R    P+ G  SL      K+   K  D
Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQSGWKAPD 245


>gi|300691029|ref|YP_003752024.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
 gi|299078089|emb|CBJ50732.1| NADH-quinone oxidoreductase subunit E [Ralstonia solanacearum
           PSI07]
          Length = 167

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G ++  +  + K+        +DGT + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGDRAADYLKQKLGIGFNETTADGTFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I    +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158


>gi|239627942|ref|ZP_04670973.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47_FAA]
 gi|239518088|gb|EEQ57954.1| NADH dehydrogenase subunit [Clostridiales bacterium 1_7_47FAA]
          Length = 164

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   F+ + E    +  VI++        A++P++ +AQ+  G++      ++++ + 
Sbjct: 4   KKQTVPFAGTPEQEAELKSVIAQLKD--QPGALMPVMQKAQDIYGYLPIEVQTMISDEMG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   +V  ++TFY QF L P G +  V VC  T C ++G  ++       +        +
Sbjct: 62  IPLEKVYGVSTFYAQFALQPKG-KYKVSVCLGTACYVKGSGEIFSKLEELLGITNGECTA 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           DG  S +   C GAC  AP++MI  + Y  LT + +  I+  ++
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKYN 164


>gi|291298802|ref|YP_003510080.1| NADH-quinone oxidoreductase E subunit [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568022|gb|ADD40987.1| NADH-quinone oxidoreductase, E subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 230

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +++EE      E++ RYP  + +SA++P+L   Q Q+G++++  I   A ++ +   +V
Sbjct: 1   MAYTEEFRAQAREIMERYPEGKQRSALLPMLHLVQSQDGYITQDGIAFCAEMIGITKAQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             ++TFYT ++  P G    V VC  T C + G +K+ +  R  +         DG ++ 
Sbjct: 61  AAVSTFYTMYKREPTGD-YLVSVCTNTLCDVMGGQKVFDALREYLGVDHDETTGDGKITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + ++   P+   ++      G+  T   G
Sbjct: 120 EHAECLAACDYAPVMTVNYEFFDKTNPDEAVQLAKNLRNGERPTPTRG 167


>gi|326316103|ref|YP_004233775.1| NADH-quinone oxidoreductase subunit E [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372939|gb|ADX45208.1| NADH-quinone oxidoreductase, E subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 174

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 2/172 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E  Q +    +E +       +++YPP + QSAV+  L   Q+++GWVS  +  V+A +L
Sbjct: 4   ESNQAAGSPVTEATRARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSAESEAVIAEVL 63

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            M  I V E+ TFY  +   P+G +  + VC   PC LR  +K +     K+        
Sbjct: 64  GMPQIAVHEVTTFYNMYNQQPLG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGIAMGETT 122

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179
            DG  + ++ EC GAC +AP++++   T    +  E+L++++D     +G  
Sbjct: 123 PDGLFTLQQCECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEGQA 174


>gi|256396788|ref|YP_003118352.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
           DSM 44928]
 gi|256363014|gb|ACU76511.1| NADH-quinone oxidoreductase, E subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 228

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
            + +++RYP  +  SA++PLL   Q +EG+VS A IE  A  L ++   V  ++TFYT +
Sbjct: 17  ADAIVARYP--QSGSALLPLLHLVQSEEGYVSPAGIEYCAAKLGLSTAEVSAVSTFYTMY 74

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG   HV VC  T C + G + +    +  +         DG ++ E +EC  AC 
Sbjct: 75  KRRPVGD-YHVGVCTNTLCAVMGGDAIFATLKEHLGVGNDETTEDGKVTLEHIECNAACD 133

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            AP++ +  +  +D+ P++   ++D    G+      GP
Sbjct: 134 FAPVMTVNWEFLDDMNPDKAVRVVDELRAGKEVHSTRGP 172


>gi|241663480|ref|YP_002981840.1| NADH dehydrogenase subunit E [Ralstonia pickettii 12D]
 gi|309781856|ref|ZP_07676589.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240865507|gb|ACS63168.1| NADH-quinone oxidoreductase, E subunit [Ralstonia pickettii 12D]
 gi|308919497|gb|EFP65161.1| NADH dehydrogenase (ubiquinone), E subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 167

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKKKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I    +
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQS 158


>gi|311278758|ref|YP_003940989.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
 gi|308747953|gb|ADO47705.1| NADH-quinone oxidoreductase, E subunit [Enterobacter cloacae SCF1]
          Length = 166

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEQKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + ++++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166


>gi|16761250|ref|NP_456867.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765652|ref|NP_461267.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141054|ref|NP_804396.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412778|ref|YP_149853.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180895|ref|YP_217312.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161502530|ref|YP_001569642.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612947|ref|YP_001586912.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549676|ref|ZP_02343435.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994673|ref|ZP_02575764.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229694|ref|ZP_02654752.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237342|ref|ZP_02662400.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242443|ref|ZP_02667375.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261659|ref|ZP_02683632.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465972|ref|ZP_02699842.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817945|ref|ZP_02829945.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444429|ref|YP_002041585.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449482|ref|YP_002046378.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470009|ref|ZP_03075993.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736216|ref|YP_002115394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251007|ref|YP_002147283.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265747|ref|ZP_03165821.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361712|ref|YP_002141348.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198246025|ref|YP_002216395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387224|ref|ZP_03213836.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929141|ref|ZP_03220284.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353440|ref|YP_002227241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857743|ref|YP_002244394.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052941|ref|ZP_03345819.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417787|ref|ZP_03350899.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427013|ref|ZP_03359763.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581186|ref|ZP_03363012.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612346|ref|ZP_03370172.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647301|ref|ZP_03377354.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213853109|ref|ZP_03382641.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224583189|ref|YP_002636987.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912396|ref|ZP_04656233.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829697|ref|ZP_06547238.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392848|sp|P0A1Y8|NUOE_SALTY RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|60392849|sp|P0A1Y9|NUOE_SALTI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|25285038|pir||AC0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|349636|gb|AAA16061.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420866|gb|AAL21226.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503549|emb|CAD07557.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136680|gb|AAO68245.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127035|gb|AAV76541.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128528|gb|AAX66231.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|160863877|gb|ABX20500.1| hypothetical protein SARI_00574 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362311|gb|ABX66079.1| hypothetical protein SPAB_00653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403092|gb|ACF63314.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407786|gb|ACF68005.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456373|gb|EDX45212.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711718|gb|ACF90939.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631138|gb|EDX49698.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093188|emb|CAR58632.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214710|gb|ACH52107.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197244002|gb|EDY26622.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289635|gb|EDY28998.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940541|gb|ACH77874.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604322|gb|EDZ02867.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321685|gb|EDZ06884.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273221|emb|CAR38184.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325189|gb|EDZ13028.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327492|gb|EDZ14256.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335581|gb|EDZ22345.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338362|gb|EDZ25126.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345101|gb|EDZ31865.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349325|gb|EDZ35956.1| NADH-quinone oxidoreductase, E subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709546|emb|CAR33891.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467716|gb|ACN45546.1| ATP synthase subunit E [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247531|emb|CBG25358.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994420|gb|ACY89305.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158883|emb|CBW18396.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913316|dbj|BAJ37290.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086759|emb|CBY96531.1| NADH dehydrogenase I chain E [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222974|gb|EFX48045.1| NADH-ubiquinone oxidoreductase chain E [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617071|gb|EFY13977.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617623|gb|EFY14522.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624747|gb|EFY21576.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630296|gb|EFY27066.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634477|gb|EFY31210.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639187|gb|EFY35879.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640050|gb|EFY36717.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645729|gb|EFY42253.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651505|gb|EFY47880.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656064|gb|EFY52363.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659417|gb|EFY55664.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665877|gb|EFY62060.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669883|gb|EFY66024.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673869|gb|EFY69966.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678627|gb|EFY74683.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683577|gb|EFY79591.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687653|gb|EFY83623.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715374|gb|EFZ06945.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130656|gb|ADX18086.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193513|gb|EFZ78718.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198418|gb|EFZ83520.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201932|gb|EFZ86994.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208530|gb|EFZ93469.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209761|gb|EFZ94685.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218297|gb|EGA03007.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222946|gb|EGA07295.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227381|gb|EGA11546.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232292|gb|EGA16395.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235674|gb|EGA19758.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241165|gb|EGA25201.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244907|gb|EGA28909.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250026|gb|EGA33920.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251638|gb|EGA35506.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254949|gb|EGA38740.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260329|gb|EGA43948.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268095|gb|EGA51572.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270812|gb|EGA54250.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624146|gb|EGE30491.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628532|gb|EGE34875.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989258|gb|AEF08241.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 166

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKNLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 166


>gi|242399494|ref|YP_002994919.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
           MM 739]
 gi|242265888|gb|ACS90570.1| NADH:ubiquinone oxidoreductase, subunit E [Thermococcus sibiricus
           MM 739]
          Length = 154

 Score =  211 bits (537), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E I  Y P+   S++IPLL + QE  G++ + A+E ++  L +   RV  +ATFY QF+ 
Sbjct: 6   EYIYHYEPN--PSSLIPLLQKTQETFGYLPKEALEEISRYLKVPLSRVYGVATFYAQFRF 63

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P+G +  +++C  T C + G   + +  R ++  +      DG ++ E V C G C  A
Sbjct: 64  EPLG-KYVIKICHGTACHVNGAVNISQAIREEVGIEEGQTTVDGLITLERVACLGCCSLA 122

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P++MI +  Y  LTP+++ +II     G+
Sbjct: 123 PVIMINEKVYGKLTPDKVRKIIRNLKEGK 151


>gi|325983285|ref|YP_004295687.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
 gi|325532804|gb|ADZ27525.1| NADH-quinone oxidoreductase, E subunit [Nitrosomonas sp. AL212]
          Length = 158

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  I++YP  R QSAV+  L  AQE++GW++   +  VA  L M  I V E
Sbjct: 2   LSAESLKRIDREIAKYPVDRKQSAVMSALAIAQEEKGWLANETMNFVAEYLGMPPIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L P G +  + +C   PC L G     +  + K+  +      DG  + +E
Sbjct: 62  VATFYNMYNLEPTG-KYKITICTNLPCALSGSNDSAKYIKQKLGIEFNQTTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        ++ E +++++   
Sbjct: 121 GECFGACGDAPVLLVNNKRMCSFMSEEMIDKLLREL 156


>gi|257095315|ref|YP_003168956.1| NADH dehydrogenase subunit E [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047839|gb|ACV37027.1| NADH-quinone oxidoreductase, E subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 157

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + ES   ++  I++YP  + QSAV+  L  AQE++GW+S  AIE VA  L MA I   E
Sbjct: 2   LTSESLKRIDREIAKYPADQKQSAVMASLAIAQEEQGWLSSEAIEFVAGYLGMAPIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG +  V VC   PCML G     E  + K+         DG ++ +E
Sbjct: 62  VASFYNMYDLKPVG-KYKVSVCTNLPCMLTGGVDAGEYLKQKLGIDYNETTPDGLITLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        + PE++++++    
Sbjct: 121 GECMGACGDAPVMIVNNRRMCSWMNPEQIDKLLAELK 157


>gi|22125528|ref|NP_668951.1| NADH dehydrogenase subunit E [Yersinia pestis KIM 10]
 gi|45442152|ref|NP_993691.1| NADH dehydrogenase subunit E [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808039|ref|YP_651955.1| NADH dehydrogenase subunit E [Yersinia pestis Antiqua]
 gi|108812309|ref|YP_648076.1| NADH dehydrogenase subunit E [Yersinia pestis Nepal516]
 gi|145599242|ref|YP_001163318.1| NADH dehydrogenase subunit E [Yersinia pestis Pestoides F]
 gi|229838094|ref|ZP_04458253.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895293|ref|ZP_04510467.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
           A]
 gi|229898654|ref|ZP_04513799.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902653|ref|ZP_04517770.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
 gi|270490165|ref|ZP_06207239.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
 gi|294504366|ref|YP_003568428.1| ATP synthase subunit E [Yersinia pestis Z176003]
 gi|21958427|gb|AAM85202.1|AE013766_5 NADH dehydrogenase I chain E [Yersinia pestis KIM 10]
 gi|45437016|gb|AAS62568.1| NADH dehydrogenase I chain E [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775957|gb|ABG18476.1| NADH dehydrogenase I chain E [Yersinia pestis Nepal516]
 gi|108779952|gb|ABG14010.1| NADH dehydrogenase I chain E [Yersinia pestis Antiqua]
 gi|145210938|gb|ABP40345.1| NADH dehydrogenase I chain E [Yersinia pestis Pestoides F]
 gi|229680100|gb|EEO76199.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Nepal516]
 gi|229688202|gb|EEO80273.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694460|gb|EEO84507.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701779|gb|EEO89804.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis Pestoides
           A]
 gi|262362645|gb|ACY59366.1| ATP synthase subunit E [Yersinia pestis D106004]
 gi|262366274|gb|ACY62831.1| ATP synthase subunit E [Yersinia pestis D182038]
 gi|270338669|gb|EFA49446.1| NADH dehydrogenase subunit E [Yersinia pestis KIM D27]
 gi|294354825|gb|ADE65166.1| ATP synthase subunit E [Yersinia pestis Z176003]
 gi|320014610|gb|ADV98181.1| NADH:ubiquinone oxidoreductase, chain E [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 187

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186


>gi|310768162|gb|ADP13112.1| NADH dehydrogenase subunit E [Erwinia sp. Ejp617]
          Length = 171

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLGIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171


>gi|307328625|ref|ZP_07607798.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885737|gb|EFN16750.1| NADH-quinone oxidoreductase, E subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 276

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                EVI+RYP SR  SA++PLL   Q +EG V+R  +   A +L +    V  +ATFY
Sbjct: 25  EADAREVIARYPDSR--SALLPLLHLVQSEEGHVTRTGMRFCAEVLGLTTAEVTAVATFY 82

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++  P G    V VC  T C + G + + E  ++ +         DG ++ E +EC  
Sbjct: 83  TMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEELQSHLGVGNGETTEDGKVTLEHIECNA 141

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AC  AP+VM+  + +++ T E  + ++D    G+      G
Sbjct: 142 ACDYAPVVMVNWEFFDNQTIESAKGLVDDLRAGRTVEPTRG 182


>gi|282855270|ref|ZP_06264602.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
 gi|282581858|gb|EFB87243.1| NADH dehydrogenase subunit E [Propionibacterium acnes J139]
 gi|314923990|gb|EFS87821.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL001PA1]
 gi|314965054|gb|EFT09153.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL082PA2]
 gi|314983074|gb|EFT27166.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA3]
 gi|315090607|gb|EFT62583.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL110PA4]
 gi|315093906|gb|EFT65882.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL060PA1]
 gi|315104125|gb|EFT76101.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL050PA2]
 gi|327325782|gb|EGE67574.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL103PA1]
          Length = 261

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G    + VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +  +      G +I        
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWREAER 209

Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
                   R    P+ G  SL      K+   K  D
Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245


>gi|83746301|ref|ZP_00943354.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
 gi|83727051|gb|EAP74176.1| NADH-quinone oxidoreductase chain E [Ralstonia solanacearum UW551]
          Length = 167

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + QSAV+  L  AQ ++GWVS   ++ VA  L+M  + V E
Sbjct: 2   LSAEALKEIDRAVAKYPADQKQSAVMAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  +  + K+        +DG  + +E
Sbjct: 62  VATFYNMYDTKPVG-RFKLSVCTNLPCALSGGERAADYLKQKLGIGFNETTADGNFTLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ E+L+ +I     
Sbjct: 121 GECMGACGDAPVMIVNNTHMCSFMSNEKLDALIADLQA 158


>gi|315605126|ref|ZP_07880177.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313162|gb|EFU61228.1| NADH-quinone oxidoreductase subunit E [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 235

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 21/206 (10%)

Query: 16  FSFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            S++ ++   +     ++I+RYP    +SA++P+L   Q  +G+VS   I+ ++  L++ 
Sbjct: 1   MSYTPDTLARLQADAAQIIARYPQGHARSALLPMLHLIQSVDGYVSPDGIDFISATLELP 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFYTQ++  P G    V VC    C + G +++ E   +K+       ++DG
Sbjct: 61  RAEISAVATFYTQYKRHPTGD-YLVGVCTNALCAVMGGDEIWEKVSDKVGVGSDETSADG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP------- 184
            ++ E +EC  AC  AP+VM+  + +++ TPE    +ID    G+      GP       
Sbjct: 120 RITLERIECNAACDYAPVVMVNWEFFDNQTPESAAAMIDDIQEGRDIHPTRGPVVAPTFK 179

Query: 185 QIDRISS---------APAGGLTSLL 201
           + +R+ +          P+ G ++LL
Sbjct: 180 ENERVLAGFLDGHEDEGPSAGQSTLL 205


>gi|148706373|gb|EDL38320.1| mCG9061, isoform CRA_a [Mus musculus]
          Length = 155

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 22  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNGWLPISA 81

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L +  +RV E+ATFYT +   PVG + H+QVC TTPCMLR  + ++E  + K+
Sbjct: 82  MNKVAEVLQVPPMRVYEVATFYTMYNRKPVG-KYHIQVCTTTPCMLRDSDSILETLQRKL 140

Query: 121 HQKPLHRNSDGTLSW 135
             K      D   + 
Sbjct: 141 GIKVGETTPDKLFTL 155


>gi|84494926|ref|ZP_00994045.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
 gi|84384419|gb|EAQ00299.1| ATP synthase subunit E [Janibacter sp. HTCC2649]
          Length = 417

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                V+++YP  + +SA++PLL   Q  +G+V+   I+  A +L+++   V  +ATFYT
Sbjct: 33  ADAELVVAKYP--QKRSALLPLLHLVQSVDGYVTGRGIDFCAEVLELSRAEVSGVATFYT 90

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           Q++  P G    V VC  T C + G +++ +     +         DG ++ E +EC  A
Sbjct: 91  QYKRHPNGE-YTVGVCTNTLCAIMGGDEIWDSVSEHLGIGHDETTDDGKVTLERIECNAA 149

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           C  AP+VM   + +++ TPE   +++D    G       GP  
Sbjct: 150 CDYAPVVMANWEFFDNQTPESTNQLVDDLRAGTPVKPTRGPNS 192


>gi|239943480|ref|ZP_04695417.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
 gi|239989934|ref|ZP_04710598.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 11379]
 gi|291446951|ref|ZP_06586341.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
 gi|291349898|gb|EFE76802.1| NADH dehydrogenase subunit E [Streptomyces roseosporus NRRL 15998]
          Length = 279

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 3/171 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P              EV++RYP SR  SA++PLL   Q +EG+VSR  I   A  LD+  
Sbjct: 8   PYPAEVRARLDADAKEVLARYPGSR--SALLPLLHLVQSEEGYVSRTGIAFCAETLDLTT 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  ++TFY+ ++  P G    V VC  T C + G + + +  +  +         DG 
Sbjct: 66  AEVTAVSTFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFDTLKEHLGVGNNETTEDGK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ TPE   +++D    G+      G
Sbjct: 125 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESATQLVDDLIAGRTVEPTRG 175


>gi|313813678|gb|EFS51392.1| NADH dehydrogenase subunit E [Propionibacterium acnes HL025PA1]
 gi|327333126|gb|EGE74853.1| NADH-quinone oxidoreductase chain e [Propionibacterium acnes
           HL097PA1]
          Length = 261

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S +  E +   ++++ SRYP SR  SA++P+L   Q  +G +S   IE  A +L +   +
Sbjct: 33  STNIDEHTIEEMHQIASRYPDSR--SALLPILHLVQSVDGRISPVGIETAAEVLGITTAQ 90

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFYT ++  P G    + VC T  C + G E+++     K+  K      DG  S
Sbjct: 91  VSGVATFYTMYKKHPAGQHH-IGVCTTALCAVMGGEEVLARVEKKLGIKEGQTTPDGKFS 149

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-------- 186
            E VEC  AC  AP++M+  +  +++TP R EEI+D+ +  +      G +I        
Sbjct: 150 LERVECNAACDFAPIMMVNWEYMDNMTPIRAEEILDSLARDEEVHSTRGAKITSWCEAER 209

Query: 187 -------DRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
                   R    P+ G  SL      K+   K  D
Sbjct: 210 VLAGFPDGRADEGPSAGEASLQGVRLAKQNGWKAPD 245


>gi|156933125|ref|YP_001437041.1| NADH dehydrogenase subunit E [Cronobacter sakazakii ATCC BAA-894]
 gi|156531379|gb|ABU76205.1| hypothetical protein ESA_00935 [Cronobacter sakazakii ATCC BAA-894]
          Length = 166

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       +  KP 
Sbjct: 60  EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMINEDTHSYLTPEGIPELLEQYK 166


>gi|149365542|ref|ZP_01887577.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
 gi|218929638|ref|YP_002347513.1| NADH dehydrogenase subunit E [Yersinia pestis CO92]
 gi|115348249|emb|CAL21177.1| NADH dehydrogenase I chain E [Yersinia pestis CO92]
 gi|149291955|gb|EDM42029.1| NADH dehydrogenase I chain E [Yersinia pestis CA88-4125]
          Length = 172

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 9   AEPAAMPDAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 66

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 67  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 125

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 171


>gi|167750761|ref|ZP_02422888.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
 gi|167656196|gb|EDS00326.1| hypothetical protein EUBSIR_01739 [Eubacterium siraeum DSM 15702]
 gi|291557754|emb|CBL34871.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 166

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +E     F+ + E    + E+I  +     Q A++P+L +AQE  G++      ++A  +
Sbjct: 4   KEKNTVPFNGTPEQEKALREMIGNHKG--QQGALMPVLQQAQEIYGYLPIEVQSIIAEEM 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +   +V  ++TFY+QF L P G +  + VC  T C ++G   +      K+        
Sbjct: 62  GIPLEKVYGVSTFYSQFSLYPKG-KYKISVCLGTACYVKGSGDIFAKLSEKLGISDGKCT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            DG  S +   C GAC  AP++ +  D Y  LT + ++ I+  ++ 
Sbjct: 121 QDGIFSLDACRCIGACGLAPVMTVNDDVYGKLTVDEIDGILAKYTE 166


>gi|210616164|ref|ZP_03290967.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
 gi|210149926|gb|EEA80935.1| hypothetical protein CLONEX_03186 [Clostridium nexile DSM 1787]
          Length = 184

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  ++E    + +VI+     +   A++P+L +AQE  G++      +++N   +   +
Sbjct: 29  PFHGTKEQEEALLQVIAELKDDK--GALMPILQKAQEIYGYLPIEVQTMISNETKIPLEK 86

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFY+QF L+P G R  + VC  T C ++G   +      K+         DG  S
Sbjct: 87  IYGVATFYSQFTLNPKG-RYRISVCLGTACYVKGSGDIYNYLMEKLGIVGGECTPDGKFS 145

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +   C GAC  AP++M+  D Y  LT + +++I+  +
Sbjct: 146 LDACRCVGACGLAPVMMVNDDVYGRLTVDDIDDILAKY 183


>gi|225405645|ref|ZP_03760834.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
           DSM 15981]
 gi|225042839|gb|EEG53085.1| hypothetical protein CLOSTASPAR_04866 [Clostridium asparagiforme
           DSM 15981]
          Length = 164

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   F+ + E    +  VI+         +++P++ +AQ+  G++      ++++ + 
Sbjct: 4   KKQTVPFAGTPEQEAQLKAVIAELKD--QPGSLMPVMQKAQDIYGYLPIEVQTMISDEMG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   +V  ++TFY QF L P G +  + VC  T C ++G  ++       +        +
Sbjct: 62  IPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFSKLEELLGITNGECTA 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           DG  S +   C GAC  AP++MI  + Y  LT + +  I+  ++
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDVPGILAKYN 164


>gi|217966956|ref|YP_002352462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336055|gb|ACK41848.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 161

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           + +   V E++ ++     +  +I +L+  Q++  ++    I  +   LD+   ++  +A
Sbjct: 4   KRNFTKVEEILKKH--EYRKDNLIKILLDIQKEYRYIPEDVINYIGVALDIPPAKIYGVA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G   LI   + +++  P     D   S ++V 
Sbjct: 62  TFYAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVG 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C GAC  AP+++I ++ Y +LTPE+++EI+      +
Sbjct: 121 CLGACALAPVMVINEEVYGNLTPEKVKEILKNLKERE 157


>gi|306814604|ref|ZP_07448766.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
 gi|305851998|gb|EFM52450.1| NADH dehydrogenase subunit E [Escherichia coli NC101]
          Length = 166

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F         +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELRAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|269794077|ref|YP_003313532.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
 gi|269096262|gb|ACZ20698.1| NADH dehydrogenase subunit E [Sanguibacter keddieii DSM 10542]
          Length = 319

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
           MS     +    PS   + E +   +    ++++ RYP +R  SA++P+L   Q ++G+V
Sbjct: 1   MSTDAQHQHPTAPSGTGYDEVTLARLTADAHQIVGRYPQAR--SALLPMLHLVQSEDGYV 58

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
           SR+ I   A +LD+    V  +ATFYTQ++  P GT   V VC  T C + G +++ +  
Sbjct: 59  SRSGITFCAEVLDLTPAEVSAVATFYTQYKRRPNGT-YTVGVCTNTLCAIMGGDEIFDEL 117

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
              +         DG ++ E VEC  AC  AP++M+  + ++D TP     ++D    G+
Sbjct: 118 SEHLGIGHDETTEDGAVTLERVECNAACDYAPVMMVNWEFFDDQTPASARGVVDDLRFGK 177

Query: 177 GDTIRPG 183
                 G
Sbjct: 178 DVVPTRG 184


>gi|300717648|ref|YP_003742451.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
 gi|299063484|emb|CAX60604.1| NADH dehydrogenase I chain E [Erwinia billingiae Eb661]
          Length = 171

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E  + + +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIEDNNAFVLSTLERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     + 
Sbjct: 59  AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEDN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIVNLLEQYQ 171


>gi|134301121|ref|YP_001114617.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134053821|gb|ABO51792.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
          Length = 177

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +  +P    F +E    +   I+    ++   A+I +L +AQ   G++ R     +A  L
Sbjct: 8   DVMEPVEQEFPKEKYDELESFINSLETTK--GALIEILHKAQHIFGYLPRDVQLFIARKL 65

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  + +FY+ F   P G +  + VC  T C +RG +K++E  + ++  +     
Sbjct: 66  GIPGAEVYGVVSFYSYFTTKPSG-KHTISVCMGTACFVRGADKIVEKFKERLGIESNETT 124

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            DG  + ++V C GAC  AP+VM+    Y  +  E +++II+ +  
Sbjct: 125 EDGLFTIKDVRCIGACGLAPVVMVDDKVYGRVKVEDVDDIINIYRR 170


>gi|242239965|ref|YP_002988146.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
 gi|242132022|gb|ACS86324.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech703]
          Length = 176

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 1   MSVRRLAEE----EFQPS--SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG 54
           M      +E    + QP+  +F  S+     +      Y  +R  +A I  L   Q+Q G
Sbjct: 1   MHDHNNTQEPIDAQGQPAGEAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKQRG 58

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           WV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +  
Sbjct: 59  WVPDGAITAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQA 117

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               K++ KP     DG  +     C G C   P +M+ +DTY  L P+ L+ +++ + 
Sbjct: 118 ALERKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMVDEDTYTRLKPDDLDSLLEQYQ 176


>gi|311744396|ref|ZP_07718198.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
           15272]
 gi|311312362|gb|EFQ82277.1| NADH-quinone oxidoreductase subunit E [Aeromicrobium marinum DSM
           15272]
          Length = 262

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +  +++   + E+  RYP +R  S ++P+L   Q  +G V+   IE  A IL ++   V 
Sbjct: 3   TLDDQTVGELREIAGRYPEAR--SGLLPMLHLVQSVQGHVTTEGIETCAEILGLSPAEVS 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFYT ++  P+GT   V VC  T C + G + ++E  +  +        +DG ++ E
Sbjct: 61  GVATFYTMYKRRPMGTHH-VGVCTNTLCAVMGGDAILERLQEHLDVANDETTADGAVTLE 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +EC  AC  AP++M+  + ++  TPE   +++D    G+      G
Sbjct: 120 HLECNAACDFAPVMMVNWEFFDHQTPESAVDLVDRLRAGEVVQATRG 166


>gi|253998387|ref|YP_003050450.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. SIP3-4]
 gi|313200463|ref|YP_004039121.1| NADH-quinone oxidoreductase subunit E [Methylovorus sp. MP688]
 gi|253985066|gb|ACT49923.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. SIP3-4]
 gi|312439779|gb|ADQ83885.1| NADH-quinone oxidoreductase, E subunit [Methylovorus sp. MP688]
          Length = 157

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  +++YP  R Q+AV+  L  AQ+++GW+S+  +  VA  L +  I  LE
Sbjct: 2   LSQESLAKIDRELTKYPADRRQAAVMSALRIAQDEKGWLSKDTVAFVAEYLGIPPIAALE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  ++L PVG    + VC    CMLR  + +++  + ++         DG  + +E
Sbjct: 62  VASFYNMYELEPVGQ-YKITVCTNISCMLRDSDVIVDHLQERLGIGFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC G C  AP+  I      E LT E+++ I++   
Sbjct: 121 GECMGCCGGAPLFHINNKRMCEFLTKEKVDAILEELK 157


>gi|237809383|ref|YP_002893823.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
 gi|237501644|gb|ACQ94237.1| NADH-quinone oxidoreductase, E subunit [Tolumonas auensis DSM 9187]
          Length = 166

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           ++Q   F+ S      +   +  Y   R  +A I  L   Q++ GWV   AI  +A++L 
Sbjct: 6   QYQNEPFALSASELAAIQHEMHHYEDPR--AATIEALKLVQKERGWVPDGAIYAIADVLG 63

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +    V  +ATFY+Q    PVG R  ++ C +  C + G + + +    K+  +P    +
Sbjct: 64  IPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCFINGYQTIQQALEEKLGIRPGQTTA 122

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           D   +   V C G C   P +MI  DT+  L+ + L+E+++ +
Sbjct: 123 DNRFTLLPVCCLGNCDKGPSMMIDDDTHSHLSVDNLDELLEQY 165


>gi|29831384|ref|NP_826018.1| NADH dehydrogenase subunit E [Streptomyces avermitilis MA-4680]
 gi|29608499|dbj|BAC72553.1| putative NADH dehydrogenase I chain E (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 287

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+I+RYP SR  SA++PLL   Q +EG V+R  ++  A+IL +    V  +ATFYT ++
Sbjct: 35  REIIARYPDSR--SALLPLLHLVQAEEGHVTRTGMQFCADILGLTTAEVTAVATFYTMYR 92

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G    V VC  T C + G + +    ++ +         DG ++ E +EC  AC  
Sbjct: 93  RRPSGD-YQVGVCTNTLCAVMGGDAIFSALQDHLGVGNGETTDDGKVTLEHIECNAACDF 151

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           AP+VM+  + +++ T    + ++D    G       G
Sbjct: 152 APVVMVNWEFFDNQTVASAKRLVDDLRAGAPVEPTRG 188


>gi|296130547|ref|YP_003637797.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022362|gb|ADG75598.1| NADH-quinone oxidoreductase, E subunit [Cellulomonas flavigena DSM
           20109]
          Length = 294

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
               E+++RYP +R  SA++P+L   Q ++G+VS   I   A++L ++   V  +ATFYT
Sbjct: 36  ADAQEIVARYPQAR--SALLPMLHLVQSEDGYVSPRGIAFCASVLGISTAEVSAVATFYT 93

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           Q++  P GT   V VC  T C + G + + E     +         DG ++ E VEC  A
Sbjct: 94  QYKRHPNGT-YTVGVCTNTLCAVMGGDAIWEELSEHLGIGHDETTPDGAITLERVECNAA 152

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AP+VM+  + +++ TP    +++D  + G+      G
Sbjct: 153 CDYAPVVMVNWEFFDNQTPASAVDVVDRLAAGEAVAPTRG 192


>gi|145225064|ref|YP_001135742.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
 gi|145217550|gb|ABP46954.1| NADH dehydrogenase subunit E [Mycobacterium gilvum PYR-GCK]
          Length = 287

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E        +I+RYP +R  SA++PLL   Q Q+G ++ A I   A+ L +    V  +A
Sbjct: 28  ERLTADAATIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCADRLGLTDAEVTAVA 85

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ ++ +P G    V VC  T C + G + ++E     +   P    +DG ++ E VE
Sbjct: 86  TFYSMYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVE 144

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AC  AP+VM+  D +++ TP    E++D   +GQ      G
Sbjct: 145 CNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRG 188


>gi|237746747|ref|ZP_04577227.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
 gi|229378098|gb|EEO28189.1| NADH-quinone oxidoreductase subunit E [Oxalobacter formigenes
           HOxBLS]
          Length = 158

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SEES   + + ++++P ++ +SA I  L  AQ+++GW+S   +  +A+ L +  + +
Sbjct: 1   MLLSEESYRKIEKELAKFPATKKRSAAIAALTIAQDEKGWLSPEVMREIADYLGVPAVAI 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A+FY+ F   PVG +  + VC   PC + G +   +  + K+H        DG  + 
Sbjct: 61  EEVASFYSMFNTRPVG-KYKIAVCCNLPCEMTGSDVTAQYLKEKLHIGFGETTPDGLFTL 119

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
            E EC GAC + P++++     Y  +T +R++ +++   
Sbjct: 120 VESECMGACGDGPVILVNNKKMYMRMTKDRIDRLLEELK 158


>gi|254391141|ref|ZP_05006348.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|294814398|ref|ZP_06773041.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442788|ref|ZP_08217522.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|197704835|gb|EDY50647.1| NADH dehydrogenase subunit E [Streptomyces clavuligerus ATCC 27064]
 gi|294326997|gb|EFG08640.1| NADH-quinone oxidoreductase subunit E [Streptomyces clavuligerus
           ATCC 27064]
          Length = 282

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             +VISRYP SR  SA++PLL   Q +EG+VSR  +   A +LD+    V  +ATFYT +
Sbjct: 34  AKDVISRYPDSR--SALLPLLHLVQSEEGFVSRTGMRFCAEVLDLTTAEVTAVATFYTMY 91

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  AC 
Sbjct: 92  RRGPSGD-YQVGVCTNTLCAVMGGDAIFEDLKEHLGVGNNGTTEDGKVTLEHIECNAACD 150

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP+VM+  + +++ TP     ++D    G+  +   G
Sbjct: 151 FAPVVMVNWEFFDNQTPASARALVDDLRAGRPVSPTRG 188


>gi|266619024|ref|ZP_06111959.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
 gi|288869445|gb|EFD01744.1| NADH dehydrogenase I, E subunit [Clostridium hathewayi DSM 13479]
          Length = 164

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   FS ++E    + EVIS    ++   A++P++ +AQ+  G++      ++++   
Sbjct: 4   KKQGVLFSGTKEQEAALKEVISELKGTK--GALMPIMQKAQDIYGYLPIEVQTMISDETG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   ++  +ATFY QF L P G +  V VC  T C ++G   + +     +         
Sbjct: 62  IPLEKIYGVATFYAQFALQPKG-KYQVSVCLGTACYVKGSGDIYDKLVELLGITNGECTP 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           DG  S +   C GAC  AP++MI  + Y  LTP+ +  I+  +
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTPDDVPGILAKY 163


>gi|227497898|ref|ZP_03928078.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832690|gb|EEH65073.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 17  SFSEESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           ++S E+       + ++ SRYP    +SA+IP+L   Q ++G+V+   I + A  L +  
Sbjct: 19  AYSPETEARLRADIEQIKSRYPSGHERSALIPMLHLVQSEDGYVAPRGIALCAETLGLTL 78

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFY+QF+  P G   HV VC    C + G +++ +             + DG 
Sbjct: 79  AEVSAVATFYSQFRRHPAGE-YHVGVCTNALCAVMGGDEIWQAVAEHTGLGNDETSEDGR 137

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           +S E +EC  AC  AP+VM+  + +++ TP    +++     G+      GP+
Sbjct: 138 ISLERIECNAACDYAPVVMVNWEFFDNQTPASAVDMVSRLERGEDVAPTRGPE 190


>gi|294340857|emb|CAZ89252.1| putative NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thiomonas
           sp. 3As]
          Length = 170

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE +   ++  +++YPP + QSAVI  L   Q+++GWVS  A + VA+ L M  I V
Sbjct: 4   MMLSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAV 63

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  F   PVG R  + VC   PC L G E   +    K+         DG  + 
Sbjct: 64  HEVVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTL 122

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP +++        + PERL+ +++    
Sbjct: 123 QESECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 162


>gi|291618186|ref|YP_003520928.1| NuoE [Pantoea ananatis LMG 20103]
 gi|291153216|gb|ADD77800.1| NuoE [Pantoea ananatis LMG 20103]
 gi|327394579|dbj|BAK12001.1| NADH-quinone oxidoreductase chain E NuoE [Pantoea ananatis AJ13355]
          Length = 171

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  + +A +   P+  F  S E    +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQHIAIKTIDPNEVFVLSAEEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       
Sbjct: 59  AIHAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGFQGIQAALEEN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIASLLEQYQ 171


>gi|225569034|ref|ZP_03778059.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
           15053]
 gi|225161833|gb|EEG74452.1| hypothetical protein CLOHYLEM_05113 [Clostridium hylemonae DSM
           15053]
          Length = 164

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ +EE    +  VI+     +   A++P+L RAQ+  G++     ++++N   +   ++
Sbjct: 10  FTGTEEQEKELLGVINELKDEK--GALMPILQRAQDIYGYLPIEVQKIISNETGIPLEKI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+QF LSP G R  + VC  T C ++G   +      K+         DG  S 
Sbjct: 68  YGVTTFYSQFNLSPKG-RYRISVCLGTACYVKGSGDIYNKLMEKLGIVGGECTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++MI  + Y  LT + +++I+  +
Sbjct: 127 DACRCVGACGLAPVMMINDEVYGRLTVDDIDDILAKY 163


>gi|51596903|ref|YP_071094.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis IP 32953]
 gi|170023804|ref|YP_001720309.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis YPIII]
 gi|186895984|ref|YP_001873096.1| NADH dehydrogenase subunit E [Yersinia pseudotuberculosis PB1/+]
 gi|51590185|emb|CAH21822.1| NADH dehydrogenase I chain E [Yersinia pseudotuberculosis IP 32953]
 gi|169750338|gb|ACA67856.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699010|gb|ACC89639.1| NADH-quinone oxidoreductase, E subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 187

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE    P +F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AEPAAMPDAFELSTEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLSIKPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEEIEKLLEQY 186


>gi|315445433|ref|YP_004078312.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
 gi|315263736|gb|ADU00478.1| NADH dehydrogenase subunit E [Mycobacterium sp. Spyr1]
          Length = 286

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E        +I+RYP +R  SA++PLL   Q Q+G ++ A I   A+ L +    V  +A
Sbjct: 28  ERLTADAETIIARYPQTR--SALLPLLHLVQAQDGCLTPAGIAFCAHRLGLTDAEVTAVA 85

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ ++ +P G    V VC  T C + G + ++E     +   P    +DG ++ E VE
Sbjct: 86  TFYSMYRRTPTGE-YLVGVCTNTLCAVMGGDAILESLEQHLDIAPGQTTADGRITLEHVE 144

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AC  AP+VM+  D +++ TP    E++D   +GQ      G
Sbjct: 145 CNAACDFAPVVMVNWDFFDNQTPASARELVDGLRSGQTPAPSRG 188


>gi|206901697|ref|YP_002250292.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740800|gb|ACI19858.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 161

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 3/159 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           + +   V E++ ++     +  +I +L+  Q++  ++    I  +   LD++  ++  +A
Sbjct: 4   KRNFAKVEEILKKH--GYRKDNLIKILLDVQKEYRYLPEDVINYIGVALDISPAKIYGVA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G   LI   + +++  P     D   S ++V 
Sbjct: 62  TFYAQFSLKPKG-KYTILVCDGTACHMAGSTSLIGAIKEELNIGPGEVTEDLMFSLDQVG 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           C GAC  AP+++I ++ Y +LTPE+++EI+      + +
Sbjct: 121 CLGACALAPVMVINEEVYGNLTPEKVKEILRNLKEREME 159


>gi|312144192|ref|YP_003995638.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904843|gb|ADQ15284.1| NADH-quinone oxidoreductase, E subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 160

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              VNE++ RY   + +  +IP+L  AQE+ G++    +  +A  L+++  +V  + TFY
Sbjct: 13  LKPVNEILGRY--EKKERYLIPVLQEAQEEYGYLPEEVLTEIALRLNLSLSQVYGVVTFY 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +QF   P G    ++VC  T C +RG  +++   + ++         D   + E V C G
Sbjct: 71  SQFHQEPRGN-NIIRVCMGTACHVRGGGQILSALKEELEIDSGETTDDLNFTLESVACIG 129

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           AC  AP++M+  DT+  L PE +  I+  + 
Sbjct: 130 ACGLAPVIMVNDDTHGRLIPEEIPSILAKYK 160


>gi|260598702|ref|YP_003211273.1| NADH dehydrogenase subunit E [Cronobacter turicensis z3032]
 gi|260217879|emb|CBA32428.1| NADH-quinone oxidoreductase subunit E [Cronobacter turicensis
           z3032]
          Length = 166

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQNEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       +  KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQSAIEKHLSIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLTPEGIPELLEQYK 166


>gi|329296022|ref|ZP_08253358.1| NADH-quinone oxidoreductase subunit E [Plautia stali symbiont]
          Length = 171

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPSS-FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +++A +   P+  F  SE     +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQKIAIQTIDPTEVFVLSEAEHHAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI  +A +L +    V  +ATFY+Q   +PVG    ++ C +  C + G + +       
Sbjct: 59  AINAIAEVLGIPASDVEGVATFYSQIYRTPVGC-HVIRYCDSVVCHITGYQGIQAALEQN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP     DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTPDGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPEGIANLLEQYQ 171


>gi|302521198|ref|ZP_07273540.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
 gi|318057839|ref|ZP_07976562.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actG]
 gi|318078937|ref|ZP_07986269.1| NADH dehydrogenase subunit E [Streptomyces sp. SA3_actF]
 gi|302430093|gb|EFL01909.1| NADH dehydrogenase subunit E [Streptomyces sp. SPB78]
          Length = 286

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 17  SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            +  E    +     E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +  
Sbjct: 15  DYPPEVRARLEADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTT 72

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT ++  P G    V VC  T C + G + + E  +  +         DG 
Sbjct: 73  AEVNAVATFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGK 131

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 132 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 182


>gi|322436007|ref|YP_004218219.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX9]
 gi|321163734|gb|ADW69439.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX9]
          Length = 169

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E A   + +I+ YP  R  SA++P+L+ AQ++ G+VS  AI+ +A  LD+  + V  
Sbjct: 9   FSPEMAAKFDHLITIYPLKR--SALVPMLLYAQDELGFVSEPAIKEIAQRLDLFDLDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CMLRG  ++++ C+ K+         DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGYEILDHCKAKLGIGHKQTTPDGQFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP + +  D ++DLT  ++++I+  ++ G+G  ++
Sbjct: 126 VECIGACCWAPAMQVNYDFHDDLTTVKVDDILAEYAAGRGKDVK 169


>gi|291280353|ref|YP_003497188.1| NADH-quinone oxidoreductase subunit E [Deferribacter desulfuricans
           SSM1]
 gi|290755055|dbj|BAI81432.1| NADH-quinone oxidoreductase, E subunit [Deferribacter desulfuricans
           SSM1]
          Length = 171

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++E+ + Y     + A IP+L + QE  G++S+  ++ +A  L+M+   +  + TF
Sbjct: 19  DLSAIDEICAEYKG--RKGATIPVLQKVQEHYGYLSKEMVDRIAENLNMSPHTIYGVITF 76

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF  +P G +  ++VC  T C ++G  ++ EV   +   K    +SD   + EEV C 
Sbjct: 77  YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVTEEFGIKNGETSSDLKFTLEEVSCI 135

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           GAC  AP++MI   TY +LTPE+  EI   ++ 
Sbjct: 136 GACGMAPVIMINDKTYGNLTPEKAREIFREYAK 168


>gi|226944921|ref|YP_002799994.1| NADH dehydrogenase subunit E [Azotobacter vinelandii DJ]
 gi|226719848|gb|ACO79019.1| NADH-ubiquinone oxidoreductase, chain E [Azotobacter vinelandii DJ]
          Length = 164

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +      Y   R  +A I  L   Q+Q GWV   AI  +  IL +
Sbjct: 5   IQTDRFVLSETERSAIEHETHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEILGI 62

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   R K+   P     D
Sbjct: 63  PASDVEGVATFYSQIFRVPVG-RHVIRVCDSMTCFIGGHETVLAALRQKLGIVPGQTTRD 121

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VMI  DT+ +LTPE +E++++A+
Sbjct: 122 GRFTLLPVCCLGNCDKAPAVMIDDDTFGNLTPEGIEQLLEAY 163


>gi|222099660|ref|YP_002534228.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
           4359]
 gi|221572050|gb|ACM22862.1| NADP-reducing hydrogenase, subunit A [Thermotoga neapolitana DSM
           4359]
          Length = 165

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    ++E I +      +  +I +L +AQE  G++    +E +++ L++   +V  + 
Sbjct: 9   EELFKELDEFIEKNNYEGKKDVLIQVLHKAQELFGYLPADVLEFISDKLNVPLSKVYGVV 68

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  ++VC  T C ++G +++ E    ++   P    SDG  S   V 
Sbjct: 69  TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVSPDEPTSDGLFSVHGVR 127

Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           C GAC  AP+VM+   D Y  +TP+ + +II+ +  
Sbjct: 128 CLGACSMAPVVMVDDSDFYGRVTPDMVPQIINKYRR 163


>gi|296132261|ref|YP_003639508.1| NADH-quinone oxidoreductase, E subunit [Thermincola sp. JR]
 gi|296030839|gb|ADG81607.1| NADH-quinone oxidoreductase, E subunit [Thermincola potens JR]
          Length = 158

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +  ++++Y   +   A+IP+L + Q+  G++ + A++ ++  L +    +  + TFY
Sbjct: 11  QEALEALLAKYKSQK--GALIPVLQQTQDIYGYLPKEALQQISRELKIPLSEIFGVCTFY 68

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF LSP G R  ++VC  T C +RG  K+ E  + ++  K      D   + E V C G
Sbjct: 69  AQFHLSPRG-RNIIRVCLGTACHVRGGAKIFERVQQELGIKDGETTEDLRFTIESVACIG 127

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP++M+  DT+  LTP+++ +I+  +
Sbjct: 128 ACGLAPVIMVNDDTHGRLTPDQIPDILAQY 157


>gi|225016112|ref|ZP_03705345.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
           DSM 5476]
 gi|224951109|gb|EEG32318.1| hypothetical protein CLOSTMETH_00056 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           ++      F  +EE A  +  VI +Y       A +P+L  AQE  G++      ++A  
Sbjct: 2   KKRISSIPFKGTEEQAQRLQAVIEKYKD--VPGANMPVLQEAQEIYGYLPIEVQSMIAEG 59

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    +  I TFY+QF LSP G + ++ VC  T C ++G   L++    ++  +P   
Sbjct: 60  LGVPIETLYGITTFYSQFSLSPKG-KYNISVCMGTACYVKGSGALLDRITKRLGIQPEET 118

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            SDG  S     C GAC  AP++ I  + Y  LT + ++ I+D +
Sbjct: 119 TSDGRFSLTACRCIGACGLAPVLTINDEVYGRLTVDDIDGILDKY 163


>gi|301631487|ref|XP_002944829.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2,
           mitochondrial-like [Xenopus (Silurana) tropicalis]
          Length = 163

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E +       +++YPP + QSAV+  L   Q+++GWVS+ +  V+A IL M  I V E
Sbjct: 1   MTEATKQRFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSQESEAVIAEILGMPQIAVHE 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  +   PVG +  + VC   PC LRG  + +     K+  +      DG  + ++
Sbjct: 61  VTTFYNMYNQHPVG-KFKLNVCTNLPCQLRGGYEALHHLEAKLGVQMGETTPDGLFTLQQ 119

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
            EC GAC +AP++++   +    +  E+L++++D     +G  
Sbjct: 120 CECLGACADAPVMLVNDRNMCSFMDGEKLDQLVDGLKAAEGKA 162


>gi|333025115|ref|ZP_08453179.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
 gi|332744967|gb|EGJ75408.1| putative NADH dehydrogenase subunit E [Streptomyces sp. Tu6071]
          Length = 279

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 17  SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            +  E    +     E+ISRYP +R  SA++PLL   Q +EG V+R  +   A  L +  
Sbjct: 8   DYPPEVRARLEADAAEIISRYPGAR--SALLPLLHLVQSEEGHVTRTGMAFCAQQLGLTT 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT ++  P G    V VC  T C + G + + E  +  +         DG 
Sbjct: 66  AEVNAVATFYTMYRRKPSGD-YQVGVCTNTLCAVMGGDAIFETLQEHLAVGNDETTEDGK 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ TPE    ++D    G+      G
Sbjct: 125 VTLEHIECNAACDFAPVVMVNWEFFDNQTPESAVRLVDDLRAGREVEPTRG 175


>gi|325262529|ref|ZP_08129266.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
 gi|324032361|gb|EGB93639.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
          Length = 164

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   FS ++E    + +VI+     +   A++P+L +AQ+  G++      +++N   
Sbjct: 4   KKQTVPFSGTKEQEESLLKVITELKDEK--GALMPILQKAQDIYGYLPIEVQTIISNETG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   ++  + TFY+QF LSP G +  + VC  T C ++G   +      K+         
Sbjct: 62  IPLEKIYGVVTFYSQFTLSPKG-KYQISVCLGTACYVKGSGDIYNALMEKLGIVGGECTP 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           DG  S +   C GAC  AP++M+  + Y  LT + +++I+  +
Sbjct: 121 DGKYSLDACRCVGACGLAPVMMVNDEVYGRLTVDDIDDILAKY 163


>gi|271501265|ref|YP_003334290.1| NADH-quinone oxidoreductase subunit E [Dickeya dadantii Ech586]
 gi|270344820|gb|ACZ77585.1| NADH-quinone oxidoreductase, E subunit [Dickeya dadantii Ech586]
          Length = 176

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A  +     F  S+     +      Y  +R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 12  DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAINAIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 70  DVLGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  L P+ L+ +++ + 
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDLDSLLEQYQ 176


>gi|296136702|ref|YP_003643944.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
 gi|295796824|gb|ADG31614.1| hypothetical protein Tint_2264 [Thiomonas intermedia K12]
          Length = 179

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE +   ++  +++YPP + QSAVI  L   Q+++GWVS  A + VA+ L M  I V
Sbjct: 13  MMLSESTRQRIDLEVAKYPPEQKQSAVIAALSIVQQEQGWVSPEAEKAVADYLGMPPIAV 72

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  F   PVG R  + VC   PC L G E   +    K+         DG  + 
Sbjct: 73  HEVVTFYNMFNTRPVG-RFKLNVCTNLPCALSGGEAAAQYLSEKLGVALGETTPDGVFTL 131

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP +++        + PERL+ +++    
Sbjct: 132 QESECLGACGDAPAMLVNDRRLCSFMRPERLDALVEELRA 171


>gi|238897508|ref|YP_002923187.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465265|gb|ACQ67039.1| NADH dehydrogenase I chain E [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 174

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 1   MSVRRLAEEEFQPS----SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
           MS  +   E    +     F  S E    + E    Y  +R  +A I  L   Q++ GWV
Sbjct: 1   MSHHKNLSEHQIDAMNVVPFVLSSEERDAIEEEKHHYEDAR--AASIEALKIVQKKRGWV 58

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
              AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G +K+  V 
Sbjct: 59  PDEAIHAIAEVLGIPASDVEGVATFYSQIFRKPVG-RHVIRYCDSVVCYITGYQKIQAVL 117

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             K+  +P     DG  +     C G C   P +MI  DT+  L  E ++ +++ +
Sbjct: 118 EEKLGIQPGQTTKDGRFTLLPTCCLGNCDKGPTMMIDDDTHSHLQIENIDTLLEQY 173


>gi|167629825|ref|YP_001680324.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
           [Heliobacterium modesticaldum Ice1]
 gi|167592565|gb|ABZ84313.1| proton-translocating NADH-ubiquinone oxidoreductase, chain e
           [Heliobacterium modesticaldum Ice1]
          Length = 191

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    +  ++ +Y   R   A+IPLL   QE  G++   A+E +A  L +   +V  +AT
Sbjct: 42  EKDRRLAALLEKYREER--GALIPLLQGVQEIYGYLPGPAMERIARTLRLPAAQVYGVAT 99

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY QF  +P G R  ++VC  T C +RG  ++ E  R ++  +     +D   + E V C
Sbjct: 100 FYAQFHFAPRG-RHVIRVCLGTACHVRGGARIFEALRRQLGVEDGGTTADLRYTLESVAC 158

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP++MI  DT+  LTPE L  I+  +
Sbjct: 159 IGACGLAPVIMIDDDTHGRLTPESLPGILARY 190


>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E [Herbaspirillum seropedicae SmR1]
 gi|300073884|gb|ADJ63283.1| NADH dehydrogenase I (Chain E) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              S+E+   ++  +++YP  + QSAV+  L  AQ + GW+     + +A+ + M  + V
Sbjct: 1   MLLSQEALKKIDRELAKYPADQRQSAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F  SPVG +  + VC   PC+L G E+     + K+        +DG  + 
Sbjct: 61  QEVATFYNMFNTSPVG-KHKITVCTNLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            E EC GAC +AP++++        ++ E+++ +++    
Sbjct: 120 MEGECMGACGDAPVMLVNNHQMCSWMSNEKIDALLEELKK 159


>gi|254821138|ref|ZP_05226139.1| NADH dehydrogenase subunit E [Mycobacterium intracellulare ATCC
           13950]
          Length = 252

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 16/206 (7%)

Query: 5   RLAEEEFQPSSF-------SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQE 53
           RL     +P++F       S+  E    +     E++ RYP  R  SA++PLL   Q Q+
Sbjct: 12  RLGPPPDEPNAFVVEGAPTSYPPEVRARLEVDAKEIMGRYPEKR--SALLPLLHLVQAQD 69

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
            +++ A +E     L ++   V  +A+FYT ++  P G    V VC  T C + G + + 
Sbjct: 70  SYLTPAGLEFCGEQLGLSGAEVSAVASFYTMYRRGPTGD-YLVGVCTNTLCAVMGGDAIF 128

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  +  +        +DG+++ + +EC  AC  AP+VM+  + +++ T E   E++D+  
Sbjct: 129 DALKEHLGIGNDETTADGSVTLQHIECNAACDYAPVVMVNWEFFDNQTCESARELVDSLR 188

Query: 174 TGQGDTIRPGPQID--RISSAPAGGL 197
           +G+      G  +   R +S    GL
Sbjct: 189 SGEPKAPTRGAPLCAFRETSRILAGL 214


>gi|269955281|ref|YP_003325070.1| NADH-quinone oxidoreductase subunit E [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303962|gb|ACZ29512.1| NADH-quinone oxidoreductase, E subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 302

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
              +++RYP  R  S ++P+L   Q  +G+VS   I   A  L +    V  +ATFYTQ+
Sbjct: 15  AEAIVARYPDPR--SGLLPMLHLVQSIDGFVSPDGIRFCAEQLGLTPAEVSAVATFYTQY 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P GT   V VC  T C + G + + +     +         DG ++ E VEC  AC 
Sbjct: 73  KRHPNGT-YTVGVCTNTLCAIMGGDAIFDELSEHLGVGHDETTEDGAITLERVECNAACD 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
            AP++M+  + +++ TPE    + D    G+      G   
Sbjct: 132 YAPVMMVNWEFFDNQTPESAAAVADDLRAGKPVRPTRGADS 172


>gi|328884316|emb|CCA57555.1| NADH-ubiquinone oxidoreductase chain E [Streptomyces venezuelae
           ATCC 10712]
          Length = 246

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                ++ RYP SR  SA++P+L   Q +EG V+R  +   A  L +    V  +ATFY+
Sbjct: 27  EDARAIVDRYPDSR--SALLPMLHLVQSEEGHVTRTGMAFCAETLGLTTAEVTAVATFYS 84

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++  P G    V VC  T C + G + + E  +  +         DG ++ E +EC  A
Sbjct: 85  MYRRKPSGD-YQVGVCTNTLCAVMGGDAIFEELKEHLAVGNNETTPDGKITLEHIECNAA 143

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C  AP+VM+  + +++ TPE  ++++D    G+      G
Sbjct: 144 CDFAPVVMVNWEFFDNQTPESAKKMVDDLRAGRTVEPTRG 183


>gi|294637176|ref|ZP_06715484.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
 gi|291089640|gb|EFE22201.1| NADH dehydrogenase I, E subunit [Edwardsiella tarda ATCC 23685]
          Length = 166

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S+ +   +   I  Y   R  +A I  L   Q++ GWV  AAI+ +A +L +    V
Sbjct: 12  FVLSDNARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDAAIDAIAEVLGIPAADV 69

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  V+ C +  C + G + +       ++ +P     DG  + 
Sbjct: 70  EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLNIQPGETTCDGRFTL 128

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               C G C   P +MI +D ++ LTPER  E+++ + 
Sbjct: 129 LPTCCLGNCDKGPNMMIDEDLHDHLTPERAIELLERYK 166


>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [Janthinobacterium sp. Marseille]
 gi|151280204|gb|ABR88614.1| NADH dehydrogenase I chain E [Janthinobacterium sp. Marseille]
          Length = 159

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++PP + QSAV+  L  AQ++  W+    ++ VA+ L M  I V
Sbjct: 1   MLLSEQTYKRIDREVAKFPPDQKQSAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  +   PVG +  + VC   PC L G EK     + K+         D   + 
Sbjct: 61  QEVATFYNMYNTKPVG-KFKISVCTNLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTL 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            E EC GAC +AP++++        ++ E+++ +++    
Sbjct: 120 VEGECMGACGDAPVMLVNNKRMCSFMSDEKIDALVEELKK 159


>gi|160936131|ref|ZP_02083504.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440941|gb|EDP18665.1| hypothetical protein CLOBOL_01027 [Clostridium bolteae ATCC
           BAA-613]
          Length = 164

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   F  + E    +   I+         A++P++ +AQE  G++      ++++ + 
Sbjct: 4   KKQTVPFKGTPEQEAALKSAIAELGD--QPGALMPVMQKAQEIYGYLPIEVQTMISDEMG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   +V  ++TFY QF L P G +  + VC  T C ++G  ++       +        +
Sbjct: 62  IPLEKVYGVSTFYAQFALQPKG-KYKISVCLGTACYVKGSGEIFRKLEELLGITNGECTA 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           DG  S +   C GAC  AP++MI  + Y  LT + +  I+  ++
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMINGEVYGRLTVDDIPGILAKYN 164


>gi|323484498|ref|ZP_08089864.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
           WAL-14163]
 gi|323692559|ref|ZP_08106792.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
 gi|323402276|gb|EGA94608.1| hypothetical protein HMPREF9474_01615 [Clostridium symbiosum
           WAL-14163]
 gi|323503425|gb|EGB19254.1| NADH dehydrogenase subunit [Clostridium symbiosum WAL-14673]
          Length = 164

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F+ + E    +  VIS    +    A++P+L  AQE  G++      ++++   +   ++
Sbjct: 10  FTCTAEQEADLKRVISELKDT--AGALMPILQHAQEIFGYLPIEVQTMISDETGIPLEKI 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L P G    + VC  T C ++G   + +     +         DG  S 
Sbjct: 68  YGVATFYSQFSLQPKGQ-YRISVCLGTACYVKGSGDIFKKLEELLGITNGECTPDGKFSL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   C GAC  AP++MI  + Y  LT + +  I+  +
Sbjct: 127 DSCRCVGACGLAPVMMINDEVYGRLTVDDVPTILAKY 163


>gi|30249733|ref|NP_841803.1| NADH dehydrogenase subunit E [Nitrosomonas europaea ATCC 19718]
 gi|30180770|emb|CAD85684.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 162

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  R QSAV+  L  AQ+++GW++   ++ +A+ L+M  I V E
Sbjct: 6   LSTEALRKIDREVAKYPADRKQSAVMSALAIAQDEKGWLATETMDFIADYLEMPAIAVYE 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC L G  +  +  + K+        +DG  + +E
Sbjct: 66  VATFYNMYNLKPVG-KYKLTVCTNLPCALSGGNQTADYLKQKLGIGFNETTTDGLFTLKE 124

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            EC G+C +AP++++        +T ++++++++  + 
Sbjct: 125 GECMGSCGDAPVLLVNNKRMCSFMTEDQIDKLLEELNR 162


>gi|134095027|ref|YP_001100102.1| NADH dehydrogenase subunit E [Herminiimonas arsenicoxydans]
 gi|133738930|emb|CAL61977.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) (NDH-1 subunit E) [Herminiimonas arsenicoxydans]
          Length = 159

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  I+++P  + QSAV+  L  AQ++ GW+    ++ VA+ L M  I V
Sbjct: 1   MLLSEQAYKKIDREIAKFPADQKQSAVMAALAIAQDETGWLPPEVMQEVADYLGMPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  +   PVG +  + VC   PC+L G E+     ++K+        +DG  + 
Sbjct: 61  QEVATFYNMYDTKPVG-KHKISVCTNLPCLLSGGERAAHYLKHKLGIDYRETTADGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            E EC GAC +AP++++        ++ ++++ +++    
Sbjct: 120 IEGECMGACGDAPVMIVNNKRMCSFMSDDKIDALVEELKK 159


>gi|91776409|ref|YP_546165.1| NADH-quinone oxidoreductase, E subunit [Methylobacillus flagellatus
           KT]
 gi|91710396|gb|ABE50324.1| NADH dehydrogenase subunit E [Methylobacillus flagellatus KT]
          Length = 159

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S ES   ++  +++YPP   Q+AV+  L  AQ ++GW+S+  I  VA+ L +  I  
Sbjct: 1   MSLSAESLARIDRELTKYPPEHRQAAVMSALRIAQTEKGWLSKETISEVADYLGIPAIAA 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           LE+ATFY  ++L PVG +  + VC    CMLR   +++   + ++         D   + 
Sbjct: 61  LEVATFYNMYELEPVG-KYKITVCTNISCMLRDSAEIVAHLQKRLGIGFNETTPDNRYTL 119

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            E EC G C  AP++ I   + +E LTPE++++I++  
Sbjct: 120 REGECMGCCGGAPLLHINNTEMHEFLTPEKVDQILEGL 157


>gi|284039946|ref|YP_003389876.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
 gi|283819239|gb|ADB41077.1| NADH-quinone oxidoreductase, E subunit [Spirosoma linguale DSM 74]
          Length = 166

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +F+ E      E+I+RYP  + +SA++PLL   QEQEGW S   ++ VA +LD+  I V 
Sbjct: 10  TFTPERLTKAQEIIARYPEGKQKSALLPLLHLLQEQEGWTSPEGMDYVARMLDIQPIEVY 69

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FYT + L+PVG +  ++ C T PC L G E +    + ++         DG  + +
Sbjct: 70  EVASFYTMYHLNPVG-KHVIEYCRTGPCCLMGGEDVYAHLKQRLGIDTGQTTVDGQFTLK 128

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           EVEC  AC   P+  I +  Y  LT ER++EIID  S 
Sbjct: 129 EVECLAACGMGPVFQIREKYYMHLTNERVDEIIDELSK 166


>gi|66219966|gb|AAY42999.1| Nqo2 [Rhodothermus marinus]
          Length = 224

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 6   LAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           L  E   P+    F+EE    +     +Y       AV+  L  AQE+ G++    +++V
Sbjct: 15  LHPEPQIPADQLFFTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQLV 72

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A+ L + Y +V  +ATFYTQ+     G +  + VC    C + G   ++     K+    
Sbjct: 73  ADELGIPYAQVYGVATFYTQYYKEKKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIHK 131

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                DG  + +EVEC GAC +AP++ +       +LTPE+++++++    G+   
Sbjct: 132 GETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187


>gi|188533350|ref|YP_001907147.1| NADH dehydrogenase subunit E [Erwinia tasmaniensis Et1/99]
 gi|292488840|ref|YP_003531727.1| NADH dehydrogenase I subunit E [Erwinia amylovora CFBP1430]
 gi|292899991|ref|YP_003539360.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
 gi|188028392|emb|CAO96253.1| NADH dehydrogenase I chain E [Erwinia tasmaniensis Et1/99]
 gi|291199839|emb|CBJ46963.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC 49946]
 gi|291554274|emb|CBA21593.1| NADH dehydrogenase I chain E [Erwinia amylovora CFBP1430]
 gi|312173000|emb|CBX81255.1| NADH dehydrogenase I chain E [Erwinia amylovora ATCC BAA-2158]
          Length = 171

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSAAERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171


>gi|217970160|ref|YP_002355394.1| NADH dehydrogenase subunit E [Thauera sp. MZ1T]
 gi|217507487|gb|ACK54498.1| NADH-quinone oxidoreductase, E subunit [Thauera sp. MZ1T]
          Length = 159

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  I++YPP + QSAV+  L  AQ ++GW+ +  IE VA  L M  I   E
Sbjct: 2   LSQESLQQIDREIAKYPPDQTQSAVMAALRIAQVEKGWLPKELIEFVARYLGMPPIAAFE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L+PVG R  + VC   PC L G     +  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLAPVG-RHKITVCTNLPCALSGGVHAADYIKEKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E++++++   
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQMLAEL 156


>gi|160872029|ref|ZP_02062161.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
           (ndh-1, chain e) [Rickettsiella grylli]
 gi|159120828|gb|EDP46166.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenasei, chain e)
           (ndh-1, chain e) [Rickettsiella grylli]
          Length = 168

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
             EE    +++ I +YP +R QSA++  L  AQE  G ++S+  I+ VA+ L M+ +   
Sbjct: 11  LPEELKKAIDKWIQKYPSTRRQSAILQALTIAQEYNGGYLSQYLIDAVADYLAMSRVTAY 70

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFYT ++L PVG R  + VC    CML GC+K+++  + +++       +D   +  
Sbjct: 71  EVATFYTLYELKPVG-RHKIGVCTNISCMLSGCDKIVKHLQTRLNINLGETTADKKFTLR 129

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           EVEC GAC NAP+V IG   YE LTPE+L++I+D  
Sbjct: 130 EVECLGACANAPVVHIGHRYYETLTPEKLDKILDGL 165


>gi|291544583|emb|CBL17692.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
           18P13]
          Length = 166

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  + E    +  ++ +   ++   A++P++ +AQ+  G++      +++++  +   +
Sbjct: 10  PFHGTAEQEAQLRAMVDQLKDTK--GALMPIMQKAQDIYGYLPIEVQTIISDMTGIPLEK 67

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFY+QF L P G    + VC  T C ++G   + E  +  +  +     +DG  S
Sbjct: 68  IYGVATFYSQFSLYPKGQ-YTISVCLGTACYVKGSGDVFEKLKQILGIEDGQCTADGKFS 126

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            E   C GAC  AP++ I  D Y  LT E L  I++ ++
Sbjct: 127 LEACRCIGACGLAPVMTINDDVYGRLTVEELPAILEKYN 165


>gi|268607921|ref|ZP_06141652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 164

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
               F  + E    + +VI        + A++P+L +AQE  G++      ++++   + 
Sbjct: 6   STVPFKGTPEQEKELLKVIE--EKKSDKGALMPILQKAQEIYGYLPIEVQAIISDNTGIP 63

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY QF L P G    + VC  T C ++G   +    + K+         DG
Sbjct: 64  LEKIYGVVTFYAQFSLYPKGE-YTISVCLGTACYVKGSGDIYNKLQEKLGIGGGECTPDG 122

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             S +   C GAC  AP++ + +D Y  LT + +++II  ++
Sbjct: 123 KFSLDACRCIGACGLAPVLTVNEDVYGRLTVDDVDKIIAKYA 164


>gi|251789017|ref|YP_003003738.1| NADH-quinone oxidoreductase subunit E [Dickeya zeae Ech1591]
 gi|247537638|gb|ACT06259.1| NADH-quinone oxidoreductase, E subunit [Dickeya zeae Ech1591]
          Length = 176

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A  +     F  S+     +      Y  +R  +A I  L   Q+Q GWV   AI+ +A
Sbjct: 12  DAPAQAASDVFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIDAIA 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            IL +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 70  EILGIPASDVEGVATFYSQIYRQPVG-RHVIRYCDSVVCHITGYQGIQAALEKKLNIKPG 128

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +M+ +DT+  L P+ L+ +++ + 
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMVDEDTHSQLKPDDLDSLLEQYQ 176


>gi|225871981|ref|YP_002753435.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792810|gb|ACO32900.1| NADH dehydrogenase I, E subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 166

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E A   + +++ YP  R  SA+IP+L+ AQ++ G++S A +  VA  + +A + V  
Sbjct: 9   FSPELAARFDRLVTLYPVKR--SALIPMLLYAQDEVGYISDAVVAEVAERIGIAELDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  PVG + HVQVC    CMLRG  +L+  C  ++        +DG  S EE
Sbjct: 67  VVSYYSLMRTKPVG-KYHVQVCTNIACMLRGGNELLHHCSKRLGIGNKQTTADGVFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           VEC GAC  AP V +  D +E+LTPE +++++D +  
Sbjct: 126 VECIGACSWAPAVQVNYDFHENLTPELMDKVLDEYRA 162


>gi|194289163|ref|YP_002005070.1| NADH dehydrogenase subunit e [Cupriavidus taiwanensis LMG 19424]
 gi|193222998|emb|CAQ69003.1| NADH:ubiquinone oxidoreductase complex I, chain E [Cupriavidus
           taiwanensis LMG 19424]
          Length = 167

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VAN L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVANYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KYKLTVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ ++L+ +++    
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSWMSDDKLDALVEELKA 160


>gi|78485166|ref|YP_391091.1| NADH-quinone oxidoreductase, E subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363452|gb|ABB41417.1| NADH dehydrogenase I chain E [Thiomicrospira crunogena XCL-2]
          Length = 164

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATF 81
              ++  ++RYP  + QSAV+  L   QE  G  ++   ++ +A+ L+M  I V E+ATF
Sbjct: 14  KERIDRWVARYPDDQKQSAVMAALRIVQETNGGHLTTELMDQIADYLEMPPIAVYEVATF 73

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  ++  PVG +  + +C +  CMLRG ++++     K++ K      DG  S ++VEC 
Sbjct: 74  YGNYEHEPVG-KHKICLCNSISCMLRGNDEILAHMEKKLNIKVGEVTEDGRFSIKKVECL 132

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  APM+ IGK  YE+LT   ++EI+D  
Sbjct: 133 GACGGAPMIQIGKTYYENLTETSVDEILDGL 163


>gi|150390844|ref|YP_001320893.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149950706|gb|ABR49234.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 163

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E+   ++E+I R+       ++IP+L   QE   ++ +  + V+A   D++  ++  +A
Sbjct: 5   KENGDKIDEIIERH--RHNPGSIIPILQEIQEVFNYLPKDILAVIAEKTDISPAKIYGVA 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF+L PVG    + +C  T C + G +K+ E   N++  +      DG  +   V 
Sbjct: 63  TFYKQFRLKPVGN-YLILLCQGTACHVNGSKKIEETLYNELKIRDGETTEDGLFTLNNVA 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C G C  +P++MI ++TY  L PE++ +II    
Sbjct: 122 CLGCCSLSPVMMINEETYGSLVPEQVIKIITELK 155


>gi|120609954|ref|YP_969632.1| NADH-quinone oxidoreductase subunit E [Acidovorax citrulli AAC00-1]
 gi|120588418|gb|ABM31858.1| NADH dehydrogenase subunit E [Acidovorax citrulli AAC00-1]
          Length = 175

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YPP + QSAV+  L   Q+++GWVS  +  V+A+ L M  I V E+
Sbjct: 15  TEATLARFAREVAKYPPEQKQSAVMACLSIVQQEQGWVSTESEAVIASYLGMPEIAVHEV 74

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   P+G +  + VC   PC LR  +K +     K+         DG  + ++ 
Sbjct: 75  TTFYNMYNQQPLG-KYKLNVCTNLPCQLRDGQKALHHLEKKLGITMGETTPDGLFTLQQC 133

Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDT 179
           EC GAC +AP++++   T    +  E+L++++D     +G  
Sbjct: 134 ECLGACADAPVMLVNDRTMCSFMDNEKLDQLVDGLRQAEGQA 175


>gi|319787439|ref|YP_004146914.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465951|gb|ADV27683.1| NADH-quinone oxidoreductase, E subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 175

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+ +   ++  ++++PP R +SAV+  L  AQEQ +GW+S   I  VA  LD+  +   
Sbjct: 19  LSDATRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLSDELIAAVAKYLDIPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F+  PVG R +V  C    C L G + L+     K+  K     +DG +  +
Sbjct: 79  EVATFYSMFETQPVG-RNNVAFCTNISCWLNGAQDLVAHAEKKLGCKLGESTADGRVYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              EC  AC  AP+V+I    +E LT E+++E++D   
Sbjct: 138 REEECVAACCGAPVVVINGHYHEKLTTEKVDELLDGLK 175


>gi|322831987|ref|YP_004212014.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
 gi|321167188|gb|ADW72887.1| NADH-quinone oxidoreductase, E subunit [Rahnella sp. Y9602]
          Length = 178

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E   P  F  S+     +      Y  +R  +A I  L   Q+  GWV   AI  ++++L
Sbjct: 17  EPVVPPVFVLSDAEREAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIYAISDVL 74

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      ++H KP    
Sbjct: 75  GIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQQLHIKPGETT 133

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            DG  +     C G C   P +MI +DT+  LTPE +  +++ ++
Sbjct: 134 EDGRFTLLPTCCLGNCDKGPSMMIDEDTHSHLTPEAIGSLLERYA 178


>gi|5650748|emb|CAB51633.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 168

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +    +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ATFY
Sbjct: 4   REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   P+G R H+Q+C    CML G E L+      +  +      DG  +   VEC G
Sbjct: 62  TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLEKTLGIRKGETTPDGAFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           AC  AP++ +G D + +L   RL+ ++++F   +  T      ++R ++AP
Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVTS-----VERAAAAP 166


>gi|311897894|dbj|BAJ30302.1| putative NADH-quinone oxidoreductase subunit E [Kitasatospora setae
           KM-6054]
          Length = 246

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P         A    E+ISRYP SR  SA++PLL   Q ++G V+   I   A  L++ 
Sbjct: 14  KPYPPEVEARLAADARELISRYPQSR--SALLPLLHLVQAEDGCVTPTGIRFCAEQLELT 71

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFYT ++  P G   HV VC  T C + G +++ +     +         DG
Sbjct: 72  TAEVTAVATFYTMYRRRPAGE-YHVGVCTNTLCAVLGGDQIFDELSEHLGIANNRTTEDG 130

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++S E +EC  AC  AP+VM+  + +++ TPE  +E++D    GQ      G
Sbjct: 131 SVSIERIECNAACDYAPVVMVNWEFFDNQTPESAKELVDRLRAGQEVRPTRG 182


>gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + S+     V+ +++RY  +     ++P+L   QE  G++     + ++  L +    V 
Sbjct: 14  ALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCQLKVPGSDVF 71

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ +   P G +  ++ C + PC + G E ++   + ++  K     +D   + E
Sbjct: 72  GVMSFYSMYTWQPKG-KYVIRFCESPPCHIAGAENMLHFMQEELGIKVGETTADSLFTLE 130

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRISSAPA 194
              C G C  AP + I +  + +LT +++ +I+  +  G+    +  P       S   A
Sbjct: 131 TTACLGICEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPYSTNAFRSYKQA 190

Query: 195 GGLTSLLDN 203
            G   LL+N
Sbjct: 191 PGELILLEN 199


>gi|259907930|ref|YP_002648286.1| NADH dehydrogenase subunit E [Erwinia pyrifoliae Ep1/96]
 gi|224963552|emb|CAX55042.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae Ep1/96]
 gi|283477811|emb|CAY73727.1| NADH dehydrogenase I chain E [Erwinia pyrifoliae DSM 12163]
          Length = 171

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 1   MSVRRLAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           M  +R+A E    S +F  S      +      Y  +R  +A I  L   Q+Q GWV   
Sbjct: 1   MHDQRIAIETIDESGAFVLSASERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDG 58

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           AI+ +A +L +    V  +ATFY+Q   +PVG R  ++ C +  C + G + +       
Sbjct: 59  AIDAIAEVLAIPASDVEGVATFYSQIFRTPVG-RHVIRYCDSVVCHITGYQGIQAALEAN 117

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           ++ KP    +DG  +     C G C   P +M+ +DT+  LTPE +  +++ + 
Sbjct: 118 LNIKPGQTTADGRFTLLPTCCLGNCDKGPTMMVDEDTHVHLTPENIANLLEQYQ 171


>gi|261820795|ref|YP_003258901.1| NADH dehydrogenase subunit E [Pectobacterium wasabiae WPP163]
 gi|261604808|gb|ACX87294.1| NADH-quinone oxidoreductase, E subunit [Pectobacterium wasabiae
           WPP163]
          Length = 181

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 3/170 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           + +A+   + ++F  S+     +      Y  +R  +A I  L   Q+  GWV   AI  
Sbjct: 15  QPVADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKARGWVPDGAIHA 72

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  K
Sbjct: 73  IADLLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIK 131

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           P     DG  +     C G C   P +MI  DT+  +TPE +E +++ + 
Sbjct: 132 PGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIETLLEQYQ 181


>gi|114330929|ref|YP_747151.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
 gi|114307943|gb|ABI59186.1| NADH dehydrogenase subunit E [Nitrosomonas eutropha C91]
          Length = 162

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           SS   S E+   ++  I++YP  + QSAV+  L  AQ+++GW++   ++ +AN L+M  I
Sbjct: 2   SSLMLSMEALKKIDREIAKYPTDKKQSAVMSALAIAQDEKGWLATETMDFIANYLEMPAI 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  + L P+G +  + VC   PC L G  + ++  + K+         DG  
Sbjct: 62  AVYEVATFYNMYNLKPIG-KYKLTVCTNLPCALSGSNQTVDYLKKKLDIGFNETTVDGLF 120

Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
           + +E EC GAC +AP++++        +T ++++++++    
Sbjct: 121 TLKEGECMGACGDAPVLLVNNKRMCSFMTEDQIDKLLEELKR 162


>gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 5/193 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P++ + S+     V+ +++RY  +     ++P+L   QE  G++     + ++  L++  
Sbjct: 10  PAASALSQAQWDQVDAILNRYKDT--PGNLMPVLQEVQEAVGYIPAEVQQRISCKLNIPG 67

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  + +FY+ +   P G +  ++ C + PC ++G + L+E  + ++     H   DG 
Sbjct: 68  SDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAELGVPLKHTTKDGL 126

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ--IDRIS 190
            + E   C G C  AP + I +  + +LT +++ +I+  +  G+    +  P       S
Sbjct: 127 FTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDYKKLPYSTNAFRS 186

Query: 191 SAPAGGLTSLLDN 203
              A G   LL+N
Sbjct: 187 YKQAPGELILLEN 199


>gi|332162386|ref|YP_004298963.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606465|emb|CBY27963.1| NADH-ubiquinone oxidoreductase chain E [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666616|gb|ADZ43260.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860333|emb|CBX70646.1| NADH-quinone oxidoreductase subunit E [Yersinia enterocolitica
           W22703]
          Length = 187

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 2   SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           +V  LA    +P++    F  S E    +      Y  +R  +A I  L   Q+Q GWV 
Sbjct: 15  NVANLAVNAAEPATTAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
             AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     
Sbjct: 73  DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            K+  +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|82777693|ref|YP_404042.1| NADH dehydrogenase subunit E [Shigella dysenteriae Sd197]
 gi|309785011|ref|ZP_07679644.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
 gi|81241841|gb|ABB62551.1| NADH dehydrogenase I chain E [Shigella dysenteriae Sd197]
 gi|308927381|gb|EFP72855.1| NADH-quinone oxidoreductase, E subunit [Shigella dysenteriae 1617]
          Length = 166

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +   +  Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 2   HENQQPQTEAFELSAAEREAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIHAIA 59

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 60  DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAALEKKLNIKPG 118

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C     +MI +DT+  LTPE + E+++ + 
Sbjct: 119 QTTFDGRFTLLPTCCLGNCDKGLNMMIDEDTHAHLTPEAIPELLERYK 166


>gi|157364372|ref|YP_001471139.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
 gi|157314976|gb|ABV34075.1| NADH-quinone oxidoreductase, E subunit [Thermotoga lettingae TMO]
          Length = 162

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 38  CQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
            +  +I +L R Q+  G ++   A E+VA  L++   +V E+ TFYT F   P G R  +
Sbjct: 21  ERDILINILHRIQDHFGNYIPPEAAEIVAEELNVPPSKVYEVLTFYTMFSTKPRG-RYVI 79

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC   PC + G  ++++  +  ++ K      DG  + E   C G C  AP++MI    
Sbjct: 80  RVCVNLPCHVTGGREIVKTIQEMLNVKFGETTEDGLFTLETTSCLGLCGVAPVIMINDQY 139

Query: 157 YEDLTPERLEEIIDAFSTG 175
           Y DLT +++ EII++   G
Sbjct: 140 YGDLTVKKIREIIESLRQG 158


>gi|119897691|ref|YP_932904.1| NADH dehydrogenase subunit E [Azoarcus sp. BH72]
 gi|119670104|emb|CAL94017.1| putative NADH-ubiquinone oxidoreductase chain E [Azoarcus sp. BH72]
          Length = 159

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+ES   ++  I++YPP + QSA +  L  AQ ++GW+S+  I  VA+ L M  I V E
Sbjct: 2   LSQESLQQIDREIAKYPPDQKQSAAMSALRIAQVEKGWLSKETIAFVADYLQMPAIAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG R  + VC   PC L G     E  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAAEYIKQKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
            EC GAC +AP+++    T    +T E++++++   
Sbjct: 121 GECMGACGDAPVLLHNNHTMCSWMTTEKIDQLLADL 156


>gi|302340165|ref|YP_003805371.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
           11293]
 gi|301637350|gb|ADK82777.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 161

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MSV+   E         FS+    ++ E  ++         +I +L + QE+ G++ R A
Sbjct: 1   MSVQSEVE-------MKFSDSLVAFIEEWKNK------PGNLIMILHKVQEEFGYIPREA 47

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + VA++LD+   ++  + TFY  F+L+  G + ++QVC  T C L+G E +I+   N +
Sbjct: 48  AKRVASMLDVPLAKIYGVVTFYHFFKLTKPG-KHNIQVCMGTACYLKGGEDIIQELENIL 106

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
                    DG  S E V C G C  AP+++IG + +  LT E+L EI+  F  
Sbjct: 107 GIGVNQVTPDGQFSLEAVRCVGCCGLAPVMVIGDEVFGKLTKEQLPEILAKFQE 160


>gi|111022876|ref|YP_705848.1| NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
 gi|110822406|gb|ABG97690.1| probable NADH dehydrogenase subunit E [Rhodococcus jostii RHA1]
          Length = 307

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           VR  A EE+ P             + VI RYP SR  SA++PLL   Q ++G ++ A IE
Sbjct: 27  VRPGAREEYPP---EVGARLDADADVVIGRYPNSR--SALLPLLHLVQAEDGCITPAGIE 81

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A  L +    V  +ATFY+ ++  P G    V VC  T C + G + ++      +  
Sbjct: 82  FCAGRLGLTGAEVAAVATFYSMYRRDPTGDYY-VGVCTNTLCAIMGGDAILAALEEHLDL 140

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                ++DG ++ E +EC  AC  AP+VM+  + +++ TPE    ++D+  +G+  +   
Sbjct: 141 PHGGTSADGKVTLEHIECNAACDYAPVVMVNWEFFDNQTPESARSLVDSLRSGERVSPSR 200

Query: 183 G 183
           G
Sbjct: 201 G 201


>gi|261856546|ref|YP_003263829.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
           neapolitanus c2]
 gi|261837015|gb|ACX96782.1| NADH-quinone oxidoreductase, E subunit [Halothiobacillus
           neapolitanus c2]
          Length = 165

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+ +   ++  +S+YPP + QSAV+  L   Q Q EG+++   ++ +A  L+M  I V 
Sbjct: 9   LSDHTRHEIDHWLSKYPPEQKQSAVLAALRETQHQNEGYLTTDLMDAIAEYLEMPPISVY 68

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+  +  P G R HV +C    C L G ++++  C  K+  K      DG +  +
Sbjct: 69  EVATFYSMLETKPCG-RHHVSICTNISCALMGSDEIVAHCEKKLGIKLGESTPDGRIYLK 127

Query: 137 -EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E EC  AC   PM+ +    YE LTP++++ I+D  
Sbjct: 128 VEEECLAACDGGPMMQVDHVYYERLTPQKVDAILDKL 164


>gi|209518511|ref|ZP_03267332.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
 gi|209501056|gb|EEA01091.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. H160]
          Length = 161

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   +E VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMEFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|50121948|ref|YP_051115.1| NADH dehydrogenase subunit E [Pectobacterium atrosepticum SCRI1043]
 gi|49612474|emb|CAG75924.1| NADH-quinone oxidoreductase chain E [Pectobacterium atrosepticum
           SCRI1043]
          Length = 181

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 1   MSVRRLAEE---EFQPSS--------FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRA 49
           M      +    + QP++        F  S+     +      Y  +R  +A I  L   
Sbjct: 1   MHDHNNHDHIDAQGQPAADSLTKENAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIV 58

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGC 109
           Q+  GWV   AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G 
Sbjct: 59  QKARGWVPDGAINAIADLLGIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHINGY 117

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + +      K+  KP     DG  +     C G C   P +MI  DT+  +TPE +E ++
Sbjct: 118 QGVQAALERKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPSMMIDDDTHSHVTPEGIESLL 177

Query: 170 DAFS 173
           + + 
Sbjct: 178 EQYQ 181


>gi|190575274|ref|YP_001973119.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia K279a]
 gi|190013196|emb|CAQ46829.1| putative respiratory-chain NADH dehydrogenase I, 24 kDa subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 175

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|268317704|ref|YP_003291423.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
           4252]
 gi|262335238|gb|ACY49035.1| NADH-quinone oxidoreductase, E subunit [Rhodothermus marinus DSM
           4252]
          Length = 224

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 6   LAEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           L  E   P+    F+EE    +     +Y       AV+  L  AQE+ G++    +++V
Sbjct: 15  LHPEPQIPADQLFFTEEEKAKIARFKEQYLE--PAGAVMKTLWLAQEKFGFLPPEVLQLV 72

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A+ L + Y +V  +ATFYTQ+     G +  + VC    C + G   ++     K+    
Sbjct: 73  ADELGIPYAQVYGVATFYTQYYKERKG-KYVLDVCTCFTCQVCGGYDILHYLEEKLGIHK 131

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                DG  + +EVEC GAC +AP++ +       +LTPE+++++++    G+   
Sbjct: 132 GETTPDGLFTLQEVECLGACGSAPVLQVSNGPYVHNLTPEKVDQLLEDLKQGKLPP 187


>gi|15642787|ref|NP_227828.1| NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
 gi|4980495|gb|AAD35106.1|AE001689_12 NADP-reducing hydrogenase, subunit A [Thermotoga maritima MSB8]
          Length = 176

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +   I        + A+I +L +AQE  G++    +E +++ LD+   +V  + 
Sbjct: 20  EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 79

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  ++VC  T C ++G +++ E    ++   P    SDG  S   V 
Sbjct: 80  TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 138

Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174
           C GAC  AP+VM+   D Y  +TP+ + +II  +  
Sbjct: 139 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKR 174


>gi|254525004|ref|ZP_05137059.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
           SKA14]
 gi|219722595|gb|EED41120.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Stenotrophomonas sp.
           SKA14]
          Length = 175

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ EGW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTPDGRVYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|299138538|ref|ZP_07031717.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599784|gb|EFI55943.1| NADH-quinone oxidoreductase, E subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 169

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+A   +++ + YP  R  SA+IP+L+ AQ++ G+VS   +  +A  LD+  + V  
Sbjct: 9   FSPETAARFDKLATIYPVKR--SALIPMLLYAQDEVGYVSDEVVAELAKRLDLLELDVRN 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CMLRG  +L++ C++ +         DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLRGGFELLDHCKHTLGIGHKGVTPDGLFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP V +  D ++DLTP +++ ++  +  G+G  ++
Sbjct: 126 VECIGACCWAPAVQVNYDFHDDLTPAKMDAVLADYREGRGKDVK 169


>gi|238788651|ref|ZP_04632443.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
           33641]
 gi|238723246|gb|EEQ14894.1| NADH-quinone oxidoreductase subunit E [Yersinia frederiksenii ATCC
           33641]
          Length = 187

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q++ GWV   AI  +A+
Sbjct: 24  AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSHLKPEDIEKLLEQY 186


>gi|113867074|ref|YP_725563.1| NADH dehydrogenase subunit E [Ralstonia eutropha H16]
 gi|113525850|emb|CAJ92195.1| NADH dehydrogenase chain E [Ralstonia eutropha H16]
          Length = 167

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ ++L+ ++D    
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDELKA 160


>gi|157371542|ref|YP_001479531.1| NADH dehydrogenase subunit E [Serratia proteamaculans 568]
 gi|157323306|gb|ABV42403.1| NADH-quinone oxidoreductase, E subunit [Serratia proteamaculans
           568]
          Length = 183

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 16/186 (8%)

Query: 1   MSVRRLAEEEFQ---------PSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLM 47
           M  ++      Q         P S    F  S E    +      Y   R  +A I  L 
Sbjct: 1   MHDQKDNHANNQALEPINAAAPQSGVDAFELSAEERDAIEHEKHHYEDPR--AASIEALK 58

Query: 48  RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR 107
             Q+Q GWV   AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + 
Sbjct: 59  IVQKQRGWVPDGAIHAIAELLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHIT 117

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
           G + +      K+  KP     DG  +     C G C   P +MI +DT+  L PE +E 
Sbjct: 118 GYQGIQAAIEKKLSIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIET 177

Query: 168 IIDAFS 173
           +++ + 
Sbjct: 178 LLEQYQ 183


>gi|293395173|ref|ZP_06639459.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
 gi|291422350|gb|EFE95593.1| NADH dehydrogenase I subunit E [Serratia odorifera DSM 4582]
          Length = 183

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            +F  S E    +      Y   R  +A I  L   Q++ GWV   AI  +A++L +   
Sbjct: 27  DAFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 84

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG  
Sbjct: 85  DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLNIKPGQTTGDGRF 143

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     C G C   P +MI +DT+  L PE +E +++ + 
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIENLLEQYQ 183


>gi|167585975|ref|ZP_02378363.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ubonensis Bu]
          Length = 161

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGACGDAPVLLVNNHKMCSFMSREKIDQLLEELSK 161


>gi|121593381|ref|YP_985277.1| NADH-quinone oxidoreductase subunit E [Acidovorax sp. JS42]
 gi|222110090|ref|YP_002552354.1| NADH-quinone oxidoreductase subunit E [Acidovorax ebreus TPSY]
 gi|120605461|gb|ABM41201.1| NADH dehydrogenase subunit E [Acidovorax sp. JS42]
 gi|221729534|gb|ACM32354.1| NADH-quinone oxidoreductase, E subunit [Acidovorax ebreus TPSY]
          Length = 163

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YP  + QSAV+  L   Q+++GWVS  +  V+A  L M  I V E+
Sbjct: 3   TEATKQRFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEYLGMPQIAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LR  +  +     K+        +DG  + ++ 
Sbjct: 63  TTFYNMYNQQPVG-KYKLAVCTNLPCQLRRGQDALHHLEKKLGISMGETTADGLFTLQQC 121

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
           EC GAC +AP++++   +    +  ++L++++D     +G 
Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMDDDKLDQMVDGLRAAEGK 162


>gi|16263283|ref|NP_436076.1| NuoE2 NADH I chain E [Sinorhizobium meliloti 1021]
 gi|307304398|ref|ZP_07584149.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
 gi|307318105|ref|ZP_07597541.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|17380452|sp|P56910|NUOE2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit E 2; AltName:
           Full=NADH dehydrogenase I subunit E 2; AltName:
           Full=NDH-1 subunit E 2
 gi|14523960|gb|AAK65488.1| NuoE2 NADH:quinone oxidoreductase (chain E) [Sinorhizobium meliloti
           1021]
 gi|306896146|gb|EFN26896.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           AK83]
 gi|306902600|gb|EFN33194.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium meliloti
           BL225C]
          Length = 168

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +    +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ATFY
Sbjct: 4   REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEEVAQILGVERVWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   P+G R H+Q+C    CML G E L+      +  +      DG  +   VEC G
Sbjct: 62  TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           AC  AP++ +G D + +L   RL+ ++++F   +  T      ++R ++AP
Sbjct: 121 ACEMAPVMQVGDDYHGNLDAARLDALLESFRAAERVTS-----VERAAAAP 166


>gi|94309876|ref|YP_583086.1| NADH dehydrogenase subunit E [Cupriavidus metallidurans CH34]
 gi|93353728|gb|ABF07817.1| NADH dehydrogenase chain E [Cupriavidus metallidurans CH34]
          Length = 168

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ L+M  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLEMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-KHKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS---TGQGDT 179
            EC GAC +AP++++        ++ ++++ +++        +GD 
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSEQKIDALVEELKSEAAAKGDK 168


>gi|227112324|ref|ZP_03825980.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 181

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A+   + ++F  S+     +      Y  +R  +A I  L   Q++ GWV   AI  +A 
Sbjct: 18  ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAE 75

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 76  LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              DG  +     C G C   P +MI +DT+  +TPE +E +++ + 
Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181


>gi|227326164|ref|ZP_03830188.1| NADH dehydrogenase subunit E [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 181

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A+   + ++F  S+     +      Y  +R  +A I  L   Q++ GWV   AI  +A+
Sbjct: 18  ADSLTKDNAFVLSDAERDAIEHEKHHYEDAR--AASIEALKIVQKERGWVPDGAIHAIAD 75

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP  
Sbjct: 76  LLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGVQAALERKLSIKPGQ 134

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              DG  +     C G C   P +MI +DT+  +TPE +E +++ + 
Sbjct: 135 TTFDGRFTLLPTCCLGNCDKGPSMMIDEDTHTHVTPEGIESLLEQYQ 181


>gi|194366600|ref|YP_002029210.1| NADH dehydrogenase subunit E [Stenotrophomonas maltophilia R551-3]
 gi|194349404|gb|ACF52527.1| NADH-quinone oxidoreductase, E subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 175

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ EGW++   I  VA  LD+  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNEGWLTDELIAGVAKYLDLPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V +C    C L G E ++  C  K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RNNVAICTNISCWLNGAEDIVRHCEKKLGIKHGESTADGRVYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC   C  APM++I    +E LT E+++E++D  
Sbjct: 138 REEECLAGCGGAPMMVINGHYHERLTLEKVDELLDGL 174


>gi|114777365|ref|ZP_01452362.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
 gi|114552147|gb|EAU54649.1| NADH dehydrogenase I chain E [Mariprofundus ferrooxydans PV-1]
          Length = 170

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FSE     + E++ RYP +  QSA++P+L  AQE  G++S    + VA++L +  ++V E
Sbjct: 12  FSEARLAEIAELVKRYPGA--QSALMPVLYMAQEDFGYLSMDVQQHVADVLGLRLMQVRE 69

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT F+  P GT   ++VC    CML G  +L+      +  K      DG  +  E
Sbjct: 70  VVTFYTMFREKPCGT-YLLEVCTNAGCMLNGANELVAHMCETLGIKVGETTDDGLFTVAE 128

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           VEC GAC  AP+V +    +E +TPE ++ +I       G
Sbjct: 129 VECAGACGGAPVVQVNHTYHEKVTPETMDALITQMRADGG 168


>gi|319761766|ref|YP_004125703.1| NADH-quinone oxidoreductase, e subunit [Alicycliphilus
           denitrificans BC]
 gi|330826546|ref|YP_004389849.1| NADH-quinone oxidoreductase subunit E [Alicycliphilus denitrificans
           K601]
 gi|317116327|gb|ADU98815.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans BC]
 gi|329311918|gb|AEB86333.1| NADH-quinone oxidoreductase, E subunit [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YPP + QSAV+  L   Q+++GW+S+ +   +A  L M  I V E+
Sbjct: 3   TEATKERFAREVAKYPPEQKQSAVMACLSIVQQEQGWISQESEAAIAEYLGMPQIAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LRG  + +     K+         DG  + ++ 
Sbjct: 63  TTFYNMYNQQPVG-KYKLAVCTNLPCQLRGGNQALHHLEAKLGITMGETTQDGLFTLQQC 121

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
           EC GAC +AP +++        +  ++L++++D     +G 
Sbjct: 122 ECLGACADAPTMLVNDRHMCSFMENDKLDQLVDGLRAAEGK 162


>gi|253576870|ref|ZP_04854195.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843737|gb|EES71760.1| NADH-quinone oxidoreductase, E subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 174

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            EE    V E+I ++   +   A+IP+L   Q+  G++   A+++V+  L M+   +  +
Sbjct: 17  DEERLHRVGEIIDQF--RQLPGALIPVLHEIQDLYGYLPEEALQIVSRELGMSMAEIYGV 74

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY+ F L P G    ++VC  T C ++G + +++    +++       +DG  + +  
Sbjct: 75  ATFYSFFSLEPKGE-HIIRVCMGTACYIKGAQGVLDRLSQELNVPVQGTTADGKFTLDAT 133

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C GAC  AP++ IG+  +  LTP  + +I+    T
Sbjct: 134 RCLGACGLAPVMTIGEKVHGRLTPNEIPKILKQMRT 169


>gi|302543440|ref|ZP_07295782.1| NADH dehydrogenase I, E subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461058|gb|EFL24151.1| NADH dehydrogenase I, E subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 276

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                EVI+RYP SR  SA++PLL   Q +EG V+R  I   A +LD+    V  +ATFY
Sbjct: 25  EADAAEVIARYPDSR--SALLPLLHLVQSEEGHVTRTGIRFCAEVLDLTTAEVTAVATFY 82

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T ++    G    V VC  T C + G + + E  ++ +         DG ++ E +EC  
Sbjct: 83  TMYRRKASGD-YQVGVCTNTLCAVMGGDAIFEELQSHLELGNGETTEDGKVTLEHIECNA 141

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG------------------P 184
           AC  AP+VM+  + +++ T    ++++D    G+  T   G                  P
Sbjct: 142 ACDFAPVVMVNWEFFDNQTVGSAKQLVDDLRAGRTVTPTRGAPLCTFKETARILAGFPDP 201

Query: 185 QIDRISSAPAGGLTSLL 201
           +   + +  + G  SL 
Sbjct: 202 RPGSVEAGGSAGPASLT 218


>gi|160881919|ref|YP_001560887.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160430585|gb|ABX44148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 164

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
               F+ ++E    +  VI      +   A++P+L +AQE  G++      +++N LD+ 
Sbjct: 6   STVPFAGTKEQEAELISVIEELKSDK--GALMPILQKAQEIYGYLPIEVQTIISNTLDIP 63

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY+QF L P G +  + VC  T C ++G   +      K+         DG
Sbjct: 64  LEKIYGVVTFYSQFSLLPKG-KFKISVCLGTACYVKGSGDIYNKLMEKLGIASGECTPDG 122

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             S E   C GAC  AP++ +  D Y  L+ + L+ I+  ++
Sbjct: 123 KFSLEACRCIGACGLAPVLTVNDDVYGRLSVDDLDGILAKYA 164


>gi|238753751|ref|ZP_04615112.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
 gi|238707987|gb|EEQ00344.1| NADH-quinone oxidoreductase subunit E [Yersinia ruckeri ATCC 29473]
          Length = 187

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  S E    +      Y  +R  +A I  L   Q++ GWV   AI  +A++L +   
Sbjct: 31  AAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPAS 88

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  
Sbjct: 89  DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHINGYQGIQAAISKKLSIQPGQTTFDGRF 147

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +MI  DT+ DL PE +E++++ +
Sbjct: 148 TLLPTCCLGNCDRGPTMMIDDDTHSDLKPEEIEQLLEQY 186


>gi|238763929|ref|ZP_04624886.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
           33638]
 gi|238697897|gb|EEP90657.1| NADH-quinone oxidoreductase subunit E [Yersinia kristensenii ATCC
           33638]
          Length = 187

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 2   SVRRLAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           +V  LA    +P++    F  S E    +      Y  +R  +A I  L   Q+Q GWV 
Sbjct: 15  NVANLAVNAAEPAATIEAFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVP 72

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
             AI  +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     
Sbjct: 73  DGAIHAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIS 131

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            K+  +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 132 KKLSIQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|238794604|ref|ZP_04638211.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
           29909]
 gi|238726090|gb|EEQ17637.1| NADH-quinone oxidoreductase subunit E [Yersinia intermedia ATCC
           29909]
          Length = 187

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A 
Sbjct: 24  AEPATTTEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIEPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|238920564|ref|YP_002934079.1| hypothetical protein NT01EI_2676 [Edwardsiella ictaluri 93-146]
 gi|238870133|gb|ACR69844.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 166

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S+ +   +   I  Y   R  +A I  L   Q++ GWV   AI+ +A +L +    V
Sbjct: 12  FVLSDSARAEIEHEIQHYEDPR--AASIEALKIVQKEHGWVPDPAIDAIAGVLGIPAADV 69

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  V+ C +  C + G + +       +  +P     DG  + 
Sbjct: 70  EGVATFYSQIFRQPVG-RHIVRYCDSVVCHITGYQGIKAALEQTLDIQPGETTFDGRFTL 128

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               C G C   P +MI  D ++ LTPER  E+++ + 
Sbjct: 129 LPTCCLGNCDKGPNMMIDDDLHDHLTPERAIELLERYK 166


>gi|238759965|ref|ZP_04621118.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
 gi|238701792|gb|EEP94356.1| NADH-quinone oxidoreductase subunit E [Yersinia aldovae ATCC 35236]
          Length = 187

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 6   LAEEEFQPSS----FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           LA    +P++    F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI
Sbjct: 19  LAVNAAEPATTVEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAI 76

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+ 
Sbjct: 77  HAIAEVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLS 135

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +P     DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 136 IQPGQTTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|300723693|ref|YP_003713000.1| NADH dehydrogenase I subunit E [Xenorhabdus nematophila ATCC 19061]
 gi|297630217|emb|CBJ90868.1| NADH dehydrogenase I chain E [Xenorhabdus nematophila ATCC 19061]
          Length = 181

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +   P  F  S E    + +    Y   R  +A I  L   Q+Q GWV   AI  +A +L
Sbjct: 20  DAQTPDEFVLSAEERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVL 77

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + +     + ++ +P    
Sbjct: 78  GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQGVQAAIESHLNIRPGQTT 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +DG  +     C G C   P +MI +DT+  + PE +E++++ + 
Sbjct: 137 ADGRFTLLPTCCLGNCDKGPAMMIDEDTHCYVRPEEIEKLLEQYQ 181


>gi|148270045|ref|YP_001244505.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170288729|ref|YP_001738967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|281412074|ref|YP_003346153.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
 gi|147735589|gb|ABQ46929.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170176232|gb|ACB09284.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|281373177|gb|ADA66739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
          Length = 162

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +   I        + A+I +L +AQE  G++    +E +++ LD+   +V  + 
Sbjct: 6   EELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVV 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  ++VC  T C ++G +++ E    ++   P    SDG  S   V 
Sbjct: 66  TFYNFFSTKPKG-KHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVR 124

Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174
           C GAC  AP+VM+   D Y  +TP+ + +II  +  
Sbjct: 125 CLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKR 160


>gi|319950455|ref|ZP_08024369.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
 gi|319435878|gb|EFV91084.1| NADH dehydrogenase subunit E [Dietzia cinnamea P4]
          Length = 256

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 6/181 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           VR  A   +        E      + +++RYP +R  SA++PLL   Q ++G ++ A IE
Sbjct: 20  VRPDARRTYPDDVL---ERLRADADLIVARYPQAR--SALLPLLHLVQAEDGHLTPAGIE 74

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A ++D++   V+ +ATFY+ ++ +P G    V VC  T C + G +++    R+ +  
Sbjct: 75  FCALVVDLSPAEVMAVATFYSMYRRTPTGD-YLVGVCTNTLCAVMGGDEIYADLRDHLGL 133

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                  DG ++ E +EC  AC  AP+VMI  + ++D TP+    ++D    G+  T   
Sbjct: 134 DGPGTTDDGRITLERIECNAACDYAPVVMINWEFFDDQTPDSARRVVDDLRAGRPVTPTR 193

Query: 183 G 183
           G
Sbjct: 194 G 194


>gi|326202422|ref|ZP_08192291.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987540|gb|EGD48367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 178

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +  +P+     +E    +   I     ++   A+I +L +AQ   G++ R     VA  L
Sbjct: 8   DVMEPAERKPPKEKFDQLEAYIESLETTK--GALIEILHKAQNIFGYLPRDVQLFVARKL 65

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  + +FY+ F   P G    V VC  T C +RG +K+IE  + K+  +     
Sbjct: 66  GIPGAEVYGVVSFYSYFTTKPGGL-HTVSVCMGTACFVRGADKVIEKFKEKLGIESNETT 124

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            DG  + ++V C GAC  AP+VM+    +  +  E +++II+ + + + +
Sbjct: 125 KDGLFTLKDVRCIGACGLAPVVMVDDKVFGRVKVEDVDDIIEMYRSNKEE 174


>gi|256831783|ref|YP_003160510.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
           20603]
 gi|256685314|gb|ACV08207.1| NADH-quinone oxidoreductase, E subunit [Jonesia denitrificans DSM
           20603]
          Length = 269

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 12  QPSSFSFSEESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           +P +  +  E+   +      ++ RYP +R  SA++P+L   Q  +G+V+R  I+  A+ 
Sbjct: 9   KPRAVGYEPETLEQLCTDAATIMGRYPNAR--SALLPMLHLVQSVDGYVTRRGIQFCADQ 66

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           LD+    V  +ATFYTQ++  P G    V VC  T C + G + + E     +       
Sbjct: 67  LDLTAAEVSAVATFYTQYKRRPNGD-YTVGVCTNTLCAVMGGDAIYEELSTYLGIGHDET 125

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             DG ++ E VEC   C  AP+VM+  + +++ TP+ +++I+D    G   T   GP
Sbjct: 126 TDDGKITLERVECNAGCDYAPVVMVNWEFFDNQTPDSMKKIVDELRLGNDVTPSRGP 182


>gi|208780264|ref|ZP_03247606.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
           FTG]
 gi|254375045|ref|ZP_04990525.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
 gi|151572763|gb|EDN38417.1| hypothetical protein FTDG_01233 [Francisella novicida GA99-3548]
 gi|208743913|gb|EDZ90215.1| NADH-quinone oxidoreductase, e subunit family [Francisella novicida
           FTG]
          Length = 162

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLGIKPGETTEDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|312796897|ref|YP_004029819.1| NADH-quinone oxidoreductase chain E [Burkholderia rhizoxinica HKI
           454]
 gi|312168672|emb|CBW75675.1| NADH-quinone oxidoreductase chain E (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 165

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP    QSAV+  L  AQ ++GW+S   ++ VA+ L M  I V E+
Sbjct: 10  SAEGLKEIDRAVAKYPAGHQQSAVMAALAIAQREQGWLSPELMQFVADYLKMPAIAVQEV 69

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYT ++ +PVG    + +C   PC L G ++  E  + K+         DG  + +E 
Sbjct: 70  ATFYTMYETAPVGQ-HKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEG 128

Query: 139 ECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           EC GAC +AP+V++        ++ E+++++++  S 
Sbjct: 129 ECFGACGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 165


>gi|323525440|ref|YP_004227593.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1001]
 gi|323382442|gb|ADX54533.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1001]
          Length = 161

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|73540668|ref|YP_295188.1| NADH dehydrogenase subunit E [Ralstonia eutropha JMP134]
 gi|72118081|gb|AAZ60344.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 168

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  I++YP  + QSAV+  L  AQ + GWVS   ++ VA+ LDM  + V E
Sbjct: 4   LSAEALKEIDRAIAKYPADQKQSAVMAALAVAQGEVGWVSPEVMQFVASYLDMPPVWVEE 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG R  + VC   PC L G E+  E  + K+        +DG  + +E
Sbjct: 64  VATFYNMYDTKPVG-RFKLAVCTNLPCALSGGERAGEYLKRKLGIDYNETTADGCFTLKE 122

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        ++ ++L+ ++D  
Sbjct: 123 GECMGACGDAPVMIVNNTRMCSFMSDDKLDALVDEL 158


>gi|170696395|ref|ZP_02887524.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
 gi|170138723|gb|EDT06922.1| NADH-quinone oxidoreductase, E subunit [Burkholderia graminis
           C4D1M]
          Length = 161

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KHKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|85059576|ref|YP_455278.1| NADH dehydrogenase subunit E [Sodalis glossinidius str.
           'morsitans']
 gi|84780096|dbj|BAE74873.1| NADH dehydrogenase I subunit E [Sodalis glossinidius str.
           'morsitans']
          Length = 177

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            +F  S E    +      Y  +R  +A I  L   Q+  GWV   AI  +A +L +   
Sbjct: 21  ETFELSREEREAIKHEKHHYEDAR--AASIEALKIVQKNRGWVPDGAIAAIAQVLGIPGS 78

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ KP     DG  
Sbjct: 79  DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALEQSLNIKPGQTTPDGRF 137

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     C G C   P +M+  DT+  LTPE +  +++ + 
Sbjct: 138 TLLPTCCLGNCDKGPTMMVDDDTHLHLTPEGIGPLLEQYR 177


>gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 610

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 4/174 (2%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANI 67
           E  +P S   + E    + EV  +    + +  V+P+L   Q+  G W+   A+++VA  
Sbjct: 3   ELKKPVSAELTSEQVKRIREVCQQ--LGKVKGKVLPILHAVQDICGNWLPLEALQLVAKE 60

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L++ Y  +  + TFY+ + ++P G R  +++C + PC + G E ++E  + ++  +    
Sbjct: 61  LEIPYGYLYGVLTFYSMYSVTPRG-RYIIRMCESAPCHVNGAENILEALKEELGVEVGGT 119

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            SDG  + E   C G C  AP + I +  + +LT  +++EI+D +  G+    R
Sbjct: 120 TSDGLFTLELTACLGTCEVAPAMQINEVVFGNLTGAKVKEILDNYRAGKEVDYR 173


>gi|206901131|ref|YP_002250632.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
           H-6-12]
 gi|206740234|gb|ACI19292.1| NADP-reducing hydrogenase, subunit a [Dictyoglomus thermophilum
           H-6-12]
          Length = 162

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            FSE +   V  ++ R+  ++   ++I +L   QE+ G++ + A+E+V+  L +    + 
Sbjct: 6   KFSEYAQKEVERILDRFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F+L P G +  +++C  T C ++G   L+      +  K      DG  S +
Sbjct: 64  GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-MGLKEGKVTEDGYFSLD 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            V C GAC  AP +MI ++ Y  LTP++L+++I+ F  
Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159


>gi|307730336|ref|YP_003907560.1| NADH-quinone oxidoreductase subunit E [Burkholderia sp. CCGE1003]
 gi|307584871|gb|ADN58269.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1003]
          Length = 161

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|290958256|ref|YP_003489438.1| NADH dehydrogenase subunit NuoE [Streptomyces scabiei 87.22]
 gi|260647782|emb|CBG70887.1| NuoE, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 287

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 17  SFSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            F ++    +     EV++RYP SR  SA++PLL   Q +EG V+R  +   A++L +  
Sbjct: 19  DFPDDVRARLERDAAEVVARYPDSR--SALLPLLHLMQAEEGHVTRTGVRFCADVLGLTT 76

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFY+ ++  P G    V VC  T C + G + + E  ++ +         DG 
Sbjct: 77  AEVTAVATFYSMYRRRPSGD-YQVGVCTNTLCAVMGGDAIFEALQDHLGVGNGETTDDGK 135

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           ++ E +EC  AC  AP+VM+  + +++ T +  + ++D    G       G
Sbjct: 136 VTLEHIECNAACDFAPVVMVNWEFFDNQTVDSAKRLVDDLRDGAEVAPTRG 186


>gi|257452668|ref|ZP_05617967.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|257466529|ref|ZP_05630840.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917684|ref|ZP_07913924.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059208|ref|ZP_07923693.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684884|gb|EFS21719.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313691559|gb|EFS28394.1| NADH:ubiquinone oxidoreductase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 160

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + EVI+       + A+IP+L +AQE  G++     + ++   ++   R+  I TFY 
Sbjct: 10  KKLEEVIN--EVEEKEMAIIPILHKAQEIFGYLPEEVQQFISQKTNIPIGRIYGIVTFYN 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F  +P G +  + VC  T C +RG +K+++  + ++         DG  S + + C GA
Sbjct: 68  FFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCIGA 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           C  AP++MI  D +  L  E+++EI+  +   + 
Sbjct: 127 CGLAPVMMIDSDVHGKLEKEQVKEILSFYRNQKA 160


>gi|169247657|gb|ACA51657.1| HydC [Thermoanaerobacterium saccharolyticum]
          Length = 160

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            FSEE+   + +VI +   +    ++I ++  AQE  G++     + ++  +++    + 
Sbjct: 7   KFSEENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + VC  T C ++G   +++  + K+         DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ +E+I+  F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159


>gi|307131811|ref|YP_003883827.1| NADH:ubiquinone oxidoreductase subunit E [Dickeya dadantii 3937]
 gi|306529340|gb|ADM99270.1| NADH:ubiquinone oxidoreductase, chain E [Dickeya dadantii 3937]
          Length = 176

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            A  +     F  S+     +      Y  +R  +A I  L   Q+  GWV   AI+ ++
Sbjct: 12  DAPAQAASDIFVLSDTERDAIEHEKHHYEDAR--AASIEALKIVQKHRGWVPDGAIDAIS 69

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
            +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP 
Sbjct: 70  EVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALERKLNIKPG 128

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               DG  +     C G C   P +MI +DT+  L P+ ++ +++ + 
Sbjct: 129 QTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSQLKPDDIDSLLEQYQ 176


>gi|332799829|ref|YP_004461328.1| NADH-quinone oxidoreductase subunit E [Tepidanaerobacter sp. Re1]
 gi|332697564|gb|AEE92021.1| NADH-quinone oxidoreductase, E subunit [Tepidanaerobacter sp. Re1]
          Length = 162

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F+++    + E++ +Y   +    ++  L  AQ   G++     E+VA  LD+    V 
Sbjct: 10  EFTDK-LKQIEEMLKKYKGQK--GTLLQALQEAQNIMGYLPIEVQEMVAETLDITLSEVY 66

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
              TFY+ F L P G +  ++ C  T C +RG EK+++  + ++  +      DG  S  
Sbjct: 67  STITFYSFFSLKPKG-KYQIRTCLGTACYVRGAEKVLDRLKTELGIEVGDTTDDGKFSLN 125

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP ++I  + Y  LTP+++ +I+  F
Sbjct: 126 ACRCIGACGLAPAIIINDEVYGRLTPDKIPDILKKF 161


>gi|302387718|ref|YP_003823540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           saccharolyticum WM1]
 gi|302198346|gb|ADL05917.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           saccharolyticum WM1]
          Length = 164

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + Q   F+ ++E  I + EVI+    ++   +++P++ +AQE  G++      ++++   
Sbjct: 4   KTQGVQFNGTKEQEIALKEVIALLRDTK--GSLMPIMQKAQEIYGYLPIEVQTMISDETG 61

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   ++  +ATFY QF L P G +  + VC  T C ++G   +       +         
Sbjct: 62  IPLEKIYGVATFYAQFALQPKG-KYQISVCLGTACYVKGSGDIFHKLEEILGITNGECTP 120

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           DG  S +   C GAC  AP++M+  + Y  L+ + + +I+  +
Sbjct: 121 DGKFSLDSCRCVGACGLAPVMMVNGEVYGRLSADDVPDILAKY 163


>gi|289578039|ref|YP_003476666.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289527752|gb|ADD02104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 160

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F EE      + +          ++I ++  AQE  G++       ++  +++    + 
Sbjct: 7   KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + +C  T C +RG   ++E  + K+  +      DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ ++EI+  F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159


>gi|187930992|ref|YP_001890976.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711901|gb|ACD30198.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 162

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVNKVFYENLTIEKVNQIIDSL 161


>gi|126701028|ref|YP_001089925.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|255102608|ref|ZP_05331585.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308434|ref|ZP_05352605.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255657358|ref|ZP_05402767.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|296451828|ref|ZP_06893547.1| Fe-hydrogenase [Clostridium difficile NAP08]
 gi|296879776|ref|ZP_06903750.1| Fe-hydrogenase [Clostridium difficile NAP07]
 gi|115252465|emb|CAJ70308.1| putative iron-only hydrogenase,electron-transferring subunit
           HymA-like [Clostridium difficile]
 gi|296259307|gb|EFH06183.1| Fe-hydrogenase [Clostridium difficile NAP08]
 gi|296429247|gb|EFH15120.1| Fe-hydrogenase [Clostridium difficile NAP07]
          Length = 165

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            + A+I +L  AQ   G++ +     VA  L +A  +V  + TFY+ F   PVG +  + 
Sbjct: 25  KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C ++G +K++     ++  K     SD   S E + C GAC  AP+V +    Y
Sbjct: 84  VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143

Query: 158 EDLTPERLEEIIDAFSTGQ 176
             + P+++ EI+D +   +
Sbjct: 144 GKVKPDQVSEILDTYRELE 162


>gi|254977027|ref|ZP_05273499.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094354|ref|ZP_05323832.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255316107|ref|ZP_05357690.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518768|ref|ZP_05386444.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651946|ref|ZP_05398848.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|260684910|ref|YP_003216195.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688568|ref|YP_003219702.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|306521695|ref|ZP_07408042.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|260211073|emb|CBA66443.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214585|emb|CBE07150.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
          Length = 165

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            + A+I +L  AQ   G++ +     VA  L +A  +V  + TFY+ F   PVG +  + 
Sbjct: 25  KEGALIQVLHEAQGIFGYLPKEVQLHVARKLGVAPAKVYGVVTFYSYFTTEPVG-KYKIS 83

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C ++G +K++     ++  K     SD   S E + C GAC  AP+V +    Y
Sbjct: 84  VCLGTVCFVKGADKILSAFEKQLGIKVGETTSDFKFSLEGLRCLGACGLAPVVTVNGKVY 143

Query: 158 EDLTPERLEEIIDAFSTGQ 176
             + P+++ EI+D +   +
Sbjct: 144 GKVKPDQVSEILDTYRELE 162


>gi|238798407|ref|ZP_04641888.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
           43969]
 gi|238717721|gb|EEQ09556.1| NADH-quinone oxidoreductase subunit E [Yersinia mollaretii ATCC
           43969]
          Length = 187

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A+
Sbjct: 24  AESATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAD 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|123441679|ref|YP_001005663.1| NADH dehydrogenase subunit E [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088640|emb|CAL11435.1| NADH dehydrogenase I chain E [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 172

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+Q GWV   AI  +A 
Sbjct: 9   AEPAITAEVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKQRGWVPDGAIHAIAE 66

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 67  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 125

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 126 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 171


>gi|320107664|ref|YP_004183254.1| NADH-quinone oxidoreductase subunit E [Terriglobus saanensis
           SP1PR4]
 gi|319926185|gb|ADV83260.1| NADH-quinone oxidoreductase, E subunit [Terriglobus saanensis
           SP1PR4]
          Length = 169

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+A   + +++ YP  R  SA++P+L+ AQ+  G+VS A +  +A  LD+  + V  
Sbjct: 9   FSPETAARFDHLVTIYPVRR--SALVPMLLYAQDDIGYVSDAVVAEIAQRLDLLELDVRG 66

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + ++Y+  +  P G + +VQVC    CML G   L++ C+ K+        +DG  S EE
Sbjct: 67  VLSYYSMLRTKPAG-KYNVQVCTNISCMLVGGYDLLDHCKAKLGIGHKGVTADGLFSLEE 125

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           VEC GAC  AP + +  D +E++T  +++ I++ ++ G+G  ++
Sbjct: 126 VECIGACCWAPAIQVNYDFHENVTNIKMDAILEDYAAGRGKDVK 169


>gi|319943352|ref|ZP_08017634.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
           51599]
 gi|319743167|gb|EFV95572.1| NADH-quinone oxidoreductase subunit E [Lautropia mirabilis ATCC
           51599]
          Length = 173

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 2/165 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     S ++   ++  I++YP  + QSAV+  L  AQ++ GWVS A IE VA+ L M  
Sbjct: 8   PVKRLLSAQAYQLIDREIAKYPADQKQSAVMGALTIAQDEVGWVSPAVIEDVADYLSMPP 67

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           I V E+ATFY  + L  VGT   + VC   PC LR  +K  E  + K+         DG 
Sbjct: 68  IAVYEVATFYNMYNLEEVGTW-KIGVCTCLPCALREGDKAGEYLKQKLGIDFGETTPDGR 126

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFSTGQ 176
            +  E EC G+C +AP+ +I     E  +   +L+ +ID     +
Sbjct: 127 FTLIETECLGSCADAPICLINDKRVESFMDNAKLDALIDELRNKE 171


>gi|225024121|ref|ZP_03713313.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
 gi|224943146|gb|EEG24355.1| hypothetical protein EIKCOROL_00989 [Eikenella corrodens ATCC
           23834]
          Length = 157

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  R +SA++  L  AQ ++GW+S   IE VA+ + +  ++  E
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLSPETIEFVADYIGIPPVQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        SDG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTSDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E  +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156


>gi|186476760|ref|YP_001858230.1| NADH dehydrogenase subunit E [Burkholderia phymatum STM815]
 gi|184193219|gb|ACC71184.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phymatum
           STM815]
          Length = 161

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L   QE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVGQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++  PVG +  + +C   PC L    G +   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETKPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGRFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|270262811|ref|ZP_06191082.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
 gi|270043495|gb|EFA16588.1| hypothetical protein SOD_c04360 [Serratia odorifera 4Rx13]
          Length = 183

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            +F  S E    +      Y   R  +A I  L   Q+Q GWV   AI  +A +L +   
Sbjct: 27  DAFVLSAEERDAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIAEVLGIPAS 84

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  KP     DG  
Sbjct: 85  DVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEKKLSIKPGQTTFDGRF 143

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     C G C   P +MI +DT+  L PE +E +++ + 
Sbjct: 144 TLLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183


>gi|261379576|ref|ZP_05984149.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
 gi|284798050|gb|EFC53397.1| NADH dehydrogenase, E subunit [Neisseria subflava NJ9703]
          Length = 157

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +++ +    
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTAEAIDKKLAELK 157


>gi|330810466|ref|YP_004354928.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378574|gb|AEA69924.1| NADH-quinone oxidoreductase subunit E [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 165

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 164


>gi|319638818|ref|ZP_07993576.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
 gi|317399722|gb|EFV80385.1| NADH dehydrogenase subunit I E [Neisseria mucosa C102]
          Length = 157

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +++ +    
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157


>gi|320540449|ref|ZP_08040099.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
           symbiotica str. Tucson]
 gi|320029380|gb|EFW11409.1| putative NADH:ubiquinone oxidoreductase, chain E [Serratia
           symbiotica str. Tucson]
          Length = 183

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S E    +      Y   R  +A I  L   Q++ GWV   AI  +A +L +    
Sbjct: 28  AFELSAEERDAIEHEKHHYEDPR--AASIEALKIVQKKRGWVPDGAIYAIAQVLGIPASD 85

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +      K++ KP     DG  +
Sbjct: 86  VEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAIEQKLNIKPGQTTVDGRFT 144

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                C G C   P +MI +DT+  L PE +E +++ + 
Sbjct: 145 LLPTCCLGNCDKGPTMMIDEDTHSQLKPEDIETLLEQYQ 183


>gi|241760700|ref|ZP_04758792.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
 gi|241318881|gb|EER55407.1| NADH dehydrogenase [ubiquinone] flavoprotein 2, precursor
           [Neisseria flavescens SK114]
          Length = 157

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +++ +    
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLAELK 157


>gi|325921407|ref|ZP_08183264.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
 gi|325548165|gb|EGD19162.1| NADH dehydrogenase subunit E [Xanthomonas gardneri ATCC 19865]
          Length = 175

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            SE++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSEKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|115443358|ref|XP_001218486.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
 gi|114188355|gb|EAU30055.1| hypothetical protein ATEG_09864 [Aspergillus terreus NIH2624]
          Length = 312

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 54/220 (24%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +SV R          F F+E++   ++E++ RYPP   ++AV+P+L   Q Q G+ S + 
Sbjct: 136 LSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQHGFTSISV 195

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA +L+M  +RV E+ATFYT + L                                 
Sbjct: 196 MNEVARLLEMPPMRVYEVATFYTMYNL--------------------------------- 222

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQG 177
                             EC GACVNAPMV I  D YEDLTPE ++ ++ A     TG  
Sbjct: 223 ------------------ECLGACVNAPMVQINDDYYEDLTPESIKALLTALKESSTGSA 264

Query: 178 DTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
               PGP   R +   + GLT+L D         ++D  +
Sbjct: 265 KVPAPGPLSGRQTCENSAGLTNLRDPVWDPETMMRQDGAL 304


>gi|14250933|emb|CAC39229.1| HymA protein [Eubacterium acidaminophilum]
          Length = 157

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F+EE+   +++VI+ Y       A++P+L  AQ+  G V+    + ++  L++    +  
Sbjct: 6   FTEENFKKLDQVIAEYKG--KPGALMPVLHEAQKIFGCVALEVQKKISEGLNIPLAEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+QF L P G    V VC  T C ++G + +I+     +  +    ++DG  +   
Sbjct: 64  VATFYSQFSLEPKGD-YVVGVCLGTACYVKGSQSIIDRVCKDLDLEVGKTSADGKFTVVA 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++ I +D Y  +  + +  I+  +
Sbjct: 123 TRCVGACGLAPVMTINEDVYGKIVADDVPGILAKY 157


>gi|91782616|ref|YP_557822.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|296160633|ref|ZP_06843448.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
 gi|91686570|gb|ABE29770.1| NADH dehydrogenase subunit E [Burkholderia xenovorans LB400]
 gi|295889159|gb|EFG68962.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. Ch1-1]
          Length = 161

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++  +++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEELSK 161


>gi|325129043|gb|EGC51893.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           N1568]
          Length = 157

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156


>gi|91789112|ref|YP_550064.1| NADH-quinone oxidoreductase subunit E [Polaromonas sp. JS666]
 gi|91698337|gb|ABE45166.1| NADH dehydrogenase subunit E [Polaromonas sp. JS666]
          Length = 166

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           SE++    +  +++YP  + QSAV+  L   QE++G+VS  + ++VA  L M  I V E+
Sbjct: 7   SEQTKARFDREVAKYPADQKQSAVMACLTIVQEEQGFVSAESEKLVAEYLGMTPIAVHEV 66

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LR   + ++   +K+        +DG  + ++ 
Sbjct: 67  TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGARALKHLEHKLGISMGQTTADGLFTLQQS 125

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
           EC GAC ++P++++        ++ E+L+++ID   + +  
Sbjct: 126 ECLGACADSPVMLVNDLTMCSFMSDEKLDQLIDGLKSAEAK 166


>gi|298370380|ref|ZP_06981696.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281840|gb|EFI23329.1| NADH dehydrogenase (ubiquinone), E subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 157

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +E+ +    
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELK 157


>gi|166712610|ref|ZP_02243817.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|289665177|ref|ZP_06486758.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667376|ref|ZP_06488451.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|325915543|ref|ZP_08177854.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
 gi|325538259|gb|EGD09944.1| NADH dehydrogenase subunit E [Xanthomonas vesicatoria ATCC 35937]
          Length = 175

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|237737512|ref|ZP_04567993.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229419392|gb|EEO34439.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 165

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 1/139 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +S++I +L +AQE  G++     E +A  +++   +V  + +FY  F + P G +  + 
Sbjct: 27  KKSSLIIILHKAQEIFGYIPEEVQEFIAEKIEVPVSKVYGVVSFYNFFSMEPKG-KYPIS 85

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C +RG EK++E  + ++  K      DG  S + + C GAC  AP++++GKD +
Sbjct: 86  VCTGTACYVRGAEKILEALQKELGLKLGGVTEDGLFSLDSLRCVGACGLAPVMLVGKDVH 145

Query: 158 EDLTPERLEEIIDAFSTGQ 176
             + PE +++II+ +   +
Sbjct: 146 GKVKPEDVKKIIENYKNLE 164


>gi|218662328|ref|ZP_03518258.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           IE4771]
          Length = 170

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
           AC  AP++ +G D + DL   R++ ++D   T  G         D  S+AP G
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169


>gi|229591256|ref|YP_002873375.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens SBW25]
 gi|312961689|ref|ZP_07776187.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
 gi|229363122|emb|CAY50141.1| NADH dehydrogenase I chain E [Pseudomonas fluorescens SBW25]
 gi|311283948|gb|EFQ62531.1| NADH dehydrogenase I chain [Pseudomonas fluorescens WH6]
          Length = 165

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+         D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNKLGIGLGQTTPD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTQLLEGY 164


>gi|15644175|ref|NP_229224.1| Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
 gi|4981988|gb|AAD36494.1|AE001794_10 Fe-hydrogenase, subunit gamma [Thermotoga maritima MSB8]
          Length = 164

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     V E++ +Y     +  +I +L+  QE   ++    I  V+  + +   ++  +A
Sbjct: 5   ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G  ++++    +    P +   D   S ++V 
Sbjct: 63  TFYAQFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP+++I  + Y +LT ++++EI+      + ++
Sbjct: 122 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 161


>gi|257463176|ref|ZP_05627576.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060767|ref|ZP_07925252.1| NADH dehydrogenase [Fusobacterium sp. D12]
 gi|313686443|gb|EFS23278.1| NADH dehydrogenase [Fusobacterium sp. D12]
          Length = 160

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S   + E I        + A+IP+L +AQE  G++     + +A  +++   R+  I TF
Sbjct: 8   SFKKLEEAID--EVEDKEMAIIPILHKAQEIFGYLPEEVQQFIAEKMEIPIGRIYGIVTF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F  +P G +  + VC  T C +RG +K+++  + ++         DG  S + + C 
Sbjct: 66  YNFFSTNPKG-KHQISVCTGTACYVRGAQKVLDEIKKELGIDVGQTTEDGLFSLDCLRCI 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP++MI  D +  L  E++ EI+  +   +
Sbjct: 125 GACGLAPVMMIDSDVHGKLEKEQVAEILSFYRNQE 159


>gi|218780401|ref|YP_002431719.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761785|gb|ACL04251.1| NADH-quinone oxidoreductase, E subunit-like protein (NuoE)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 161

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
             + +  +I  Y   +    +IPLL   QE+ G+V   +IE +A  L++    V  + TF
Sbjct: 7   DMVKLRGIIGEYKDVKW--GLIPLLQAVQEEFGYVPPESIEPIAEALNIPPSEVQGVVTF 64

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F L P G +  ++VC  T C ++G + ++   +  +H +    + D   S E V C 
Sbjct: 65  YAGFSLKPKG-KYVLRVCRGTACHVKGGQSILSSVKKHLHLEEGETSEDFQFSLETVACL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           GAC  AP +M+ +  +  L+P+++  +I  +   +GD
Sbjct: 124 GACFVAPAMMVNRTYFGKLSPDKVNNVIGQYEKTEGD 160


>gi|313672281|ref|YP_004050392.1| NADH dehydrogenase subunit e [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939037|gb|ADR18229.1| NADH dehydrogenase subunit E [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 164

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++E+  +Y     + A IP+L + QE  G++S+  IE +   L+M+   +  + TF
Sbjct: 12  DLSKIDEICEKYKG--KKGATIPVLQQVQEHYGYLSKEMIERIGENLNMSPHTLYGVLTF 69

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF  +P G +  ++VC  T C ++G  ++ EV   +   +      D   + EEV C 
Sbjct: 70  YAQFYTTPRG-KYVIRVCRGTACHVKGSGRISEVVFEEFGIRNGETTPDIKFTLEEVSCI 128

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP++MI   TY +LTPE+   I   ++  Q
Sbjct: 129 GACGMAPVIMINDKTYGNLTPEQARSIFKEYAQKQ 163


>gi|281412805|ref|YP_003346884.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
 gi|2865515|gb|AAC02684.1| Fe-hydrogenase gamma subunit [Thermotoga maritima MSB8]
 gi|281373908|gb|ADA67470.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           naphthophila RKU-10]
          Length = 161

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     V E++ +Y     +  +I +L+  QE   ++    I  V+  + +   ++  +A
Sbjct: 2   ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G  ++++    +    P +   D   S ++V 
Sbjct: 60  TFYAQFSLKPKG-KYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP+++I  + Y +LT ++++EI+      + ++
Sbjct: 119 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 158


>gi|56707215|ref|YP_169111.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257086|ref|YP_514448.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669685|ref|YP_666242.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315443|ref|YP_764166.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301250|ref|YP_001121218.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503300|ref|YP_001429365.1| NADH dehydrogenase I, subunit E [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009478|ref|ZP_02274409.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368322|ref|ZP_04984340.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368969|ref|ZP_04984982.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371431|ref|ZP_04987432.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|290952993|ref|ZP_06557614.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313813|ref|ZP_06804386.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|54114135|gb|AAV29701.1| NT02FT1740 [synthetic construct]
 gi|56603707|emb|CAG44668.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144917|emb|CAJ80265.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320018|emb|CAL08051.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130342|gb|ABI83529.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049027|gb|ABO46098.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254130|gb|EBA53224.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569670|gb|EDN35324.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253903|gb|ABU62409.1| NADH dehydrogenase I subunit E [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121890|gb|EDO66060.1| hypothetical protein FTAG_00799 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|282158323|gb|ADA77714.1| NADH-quinone oxidoreductase, e subunit family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 162

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|241763292|ref|ZP_04761349.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
 gi|241367567|gb|EER61854.1| NADH-quinone oxidoreductase, E subunit [Acidovorax delafieldii 2AN]
          Length = 163

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YPP + QSAV+  L   Q++ G+VS A+   +A  L M  I V E+
Sbjct: 3   TEATKARFAREVAKYPPEQKQSAVMACLSIVQQELGYVSEASEAAIAEYLGMPQIAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC+LR   K +E    K+         DG  + ++ 
Sbjct: 63  TTFYNMYNQQPVG-KYKLNVCTNLPCLLRDGGKALEHLEQKLGISMGETTPDGLFTLQQC 121

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
           EC GAC +AP++++   +    +  ++L++++D+    +  
Sbjct: 122 ECLGACADAPVMLVNDRNMCSFMGNDKLDQLVDSLRAAEAK 162


>gi|323704273|ref|ZP_08115852.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536339|gb|EGB26111.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 160

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            FS+E+   + +VI +   +    ++I ++  AQE  G++     + ++  +++    + 
Sbjct: 7   KFSQENINKLKKVIDQLKDT--DGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + VC  T C ++G   +++  + K+         DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ +E+I+  F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKF 159


>gi|253996969|ref|YP_003049033.1| NADH-quinone oxidoreductase subunit E [Methylotenera mobilis JLW8]
 gi|253983648|gb|ACT48506.1| NADH-quinone oxidoreductase, E subunit [Methylotenera mobilis JLW8]
          Length = 157

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E+   ++  +++YP  + Q+AV+  L   Q + GW+S+ +I  VA  L M  I  +E
Sbjct: 2   LSPEATTKIDYELTKYPADQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + LSPVG +  V +C    CMLRG ++++   ++K+         DG    +E
Sbjct: 62  VATFYNMYDLSPVG-KYKVTICTNISCMLRGSDEIVNHLQSKLGVGFNEVTPDGKFCLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
            EC G C  AP++ +   + +E LT ++++ II+   
Sbjct: 121 GECMGCCGGAPLMHVNNTEMHEFLTTDKVDAIIEGLK 157


>gi|21231956|ref|NP_637873.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767917|ref|YP_242679.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991033|ref|YP_001903043.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113687|gb|AAM41797.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573249|gb|AAY48659.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732793|emb|CAP50987.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 175

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|89896717|ref|YP_520204.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
 gi|89336165|dbj|BAE85760.1| NADH dehydrogenase I chain E [Desulfitobacterium hafniense Y51]
          Length = 160

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++++++ +   R + A+IP+L  AQ   G++    I+ ++  L +   +V  + TFY
Sbjct: 13  EEQLDQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+L+P+G R  + VC  T C +RG  K++E        K      DG  + E V C G
Sbjct: 71  AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           AC  AP++ I  + +  L  +++  I+  + 
Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160


>gi|238784997|ref|ZP_04628995.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
           43970]
 gi|238714113|gb|EEQ06127.1| NADH-quinone oxidoreductase subunit E [Yersinia bercovieri ATCC
           43970]
          Length = 187

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           AE       F  S E    +      Y  +R  +A I  L   Q+  GWV   AI  +A 
Sbjct: 24  AEPATTTDVFELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKGRGWVPDGAIHAIAE 81

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P  
Sbjct: 82  VLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQ 140

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +     C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 141 TTFDGRFTLLPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|167037868|ref|YP_001665446.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040765|ref|YP_001663750.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           sp. X514]
 gi|256750975|ref|ZP_05491858.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914803|ref|ZP_07132119.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
 gi|307723963|ref|YP_003903714.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           sp. X513]
 gi|320116285|ref|YP_004186444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855005|gb|ABY93414.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           sp. X514]
 gi|166856702|gb|ABY95110.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750085|gb|EEU63106.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889738|gb|EFK84884.1| hypothetical protein Teth561_PD1685 [Thermoanaerobacter sp. X561]
 gi|307581024|gb|ADN54423.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           sp. X513]
 gi|319929376|gb|ADV80061.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 160

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F EE      + +          ++I ++  AQE  G++       ++  +++    + 
Sbjct: 7   KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + +C  T C +RG   ++E  + K+  +      DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ ++EI+  F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159


>gi|161524208|ref|YP_001579220.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|189351035|ref|YP_001946663.1| NADH dehydrogenase subunit E [Burkholderia multivorans ATCC 17616]
 gi|221199660|ref|ZP_03572704.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
 gi|221205440|ref|ZP_03578455.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221211739|ref|ZP_03584718.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|254251865|ref|ZP_04945183.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|124894474|gb|EAY68354.1| ATP synthase subunit E [Burkholderia dolosa AUO158]
 gi|160341637|gb|ABX14723.1| NADH-quinone oxidoreductase, E subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189335057|dbj|BAG44127.1| NADH dehydrogenase I chain E [Burkholderia multivorans ATCC 17616]
 gi|221169100|gb|EEE01568.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD1]
 gi|221174278|gb|EEE06710.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2]
 gi|221180945|gb|EEE13348.1| NADH dehydrogenase I, E subunit [Burkholderia multivorans CGD2M]
          Length = 161

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLVNNHKMCSFMSREKIDQLLEELSK 161


>gi|77918445|ref|YP_356260.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77544528|gb|ABA88090.1| formate dehydrogenase gamma subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 163

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E++  Y       A+IP+L  AQ+  G++    +E ++  L + +  V  + TFY+QF L
Sbjct: 21  ELLEHYRE--YDGALIPVLQGAQDIYGYLPGEVLETISKELKIPFSEVFGVVTFYSQFHL 78

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  ++VC  T C +RG  K+ E  +  +         D   + E V C GAC  A
Sbjct: 79  KPRG-RNIIRVCLGTACHVRGGSKIFEGLKEILGVDNGGTTEDLRFTLESVACIGACGLA 137

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++MI  DT+  LT + L++I++ +
Sbjct: 138 PVIMINDDTHGRLTNDGLDKILEQY 162


>gi|304413374|ref|ZP_07394847.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
           insecticola LSR1]
 gi|304284217|gb|EFL92610.1| NADH:ubiquinone oxidoreductase, chain E [Candidatus Regiella
           insecticola LSR1]
          Length = 172

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 1   MSVRRLAEEEFQ--PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSR 58
           M+ ++   E     PS F  S E    + +    Y  +R  +A I  L   Q++ GWV  
Sbjct: 1   MNDQKNHLEGMAITPSDFVLSAEEQAAIEQEKQHYEDAR--AATIEALKIVQKKRGWVPD 58

Query: 59  AAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
            AI  +A IL +    V  +ATFY+Q    PVG R  ++ C +  C + G +++  V   
Sbjct: 59  GAIYAIAEILAIPASDVEGVATFYSQIFRRPVG-RHVIRYCDSVVCYITGYQEIQTVLEK 117

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           K+  KP    +DG  +     C G C   P +MI +DT+  L PE +E +++ +
Sbjct: 118 KLSIKPGQTTTDGRFTLLPTCCLGNCDKGPTMMIDEDTHSYLKPEDIEPLLERY 171


>gi|225077020|ref|ZP_03720219.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
 gi|224951577|gb|EEG32786.1| hypothetical protein NEIFLAOT_02072 [Neisseria flavescens
           NRL30031/H210]
          Length = 157

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156


>gi|53718851|ref|YP_107837.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei K96243]
 gi|53725815|ref|YP_103430.1| NADH dehydrogenase subunit E [Burkholderia mallei ATCC 23344]
 gi|76812174|ref|YP_332848.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1710b]
 gi|83720126|ref|YP_441618.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|121599466|ref|YP_992473.1| NADH dehydrogenase subunit E [Burkholderia mallei SAVP1]
 gi|124383870|ref|YP_001026724.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10229]
 gi|126439317|ref|YP_001058342.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 668]
 gi|126449336|ref|YP_001079991.1| NADH dehydrogenase subunit E [Burkholderia mallei NCTC 10247]
 gi|126454652|ref|YP_001065581.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 1106a]
 gi|134283919|ref|ZP_01770615.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|167000364|ref|ZP_02266182.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|167580426|ref|ZP_02373300.1| NADH dehydrogenase subunit E [Burkholderia thailandensis TXDOH]
 gi|167618535|ref|ZP_02387166.1| NADH dehydrogenase subunit E [Burkholderia thailandensis Bt4]
 gi|167718847|ref|ZP_02402083.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei DM98]
 gi|167737856|ref|ZP_02410630.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 14]
 gi|167815040|ref|ZP_02446720.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 91]
 gi|167823456|ref|ZP_02454927.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 9]
 gi|167845008|ref|ZP_02470516.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei B7210]
 gi|167893549|ref|ZP_02480951.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 7894]
 gi|167901995|ref|ZP_02489200.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei NCTC 13177]
 gi|167910231|ref|ZP_02497322.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei 112]
 gi|167918264|ref|ZP_02505355.1| NADH dehydrogenase subunit E [Burkholderia pseudomallei BCC215]
 gi|217419497|ref|ZP_03451003.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|226195406|ref|ZP_03790995.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811586|ref|YP_002896037.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238562075|ref|ZP_00440948.2| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242314477|ref|ZP_04813493.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|254175344|ref|ZP_04882004.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|254181183|ref|ZP_04887780.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|254190546|ref|ZP_04897053.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195089|ref|ZP_04901518.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|254202106|ref|ZP_04908469.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|254207436|ref|ZP_04913786.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|254260117|ref|ZP_04951171.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
 gi|254298537|ref|ZP_04965989.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|254359858|ref|ZP_04976128.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|257139686|ref|ZP_05587948.1| NADH dehydrogenase subunit E [Burkholderia thailandensis E264]
 gi|52209265|emb|CAH35210.1| putative NADH dehydrogenase I chain E [Burkholderia pseudomallei
           K96243]
 gi|52429238|gb|AAU49831.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 23344]
 gi|76581627|gb|ABA51102.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Burkholderia
           pseudomallei 1710b]
 gi|83653951|gb|ABC38014.1| NADH dehydrogenase I, E subunit [Burkholderia thailandensis E264]
 gi|121228276|gb|ABM50794.1| NADH dehydrogenase I, E subunit [Burkholderia mallei SAVP1]
 gi|124291890|gb|ABN01159.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10229]
 gi|126218810|gb|ABN82316.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           668]
 gi|126228294|gb|ABN91834.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106a]
 gi|126242206|gb|ABO05299.1| NADH dehydrogenase I, E subunit [Burkholderia mallei NCTC 10247]
 gi|134244708|gb|EBA44806.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 305]
 gi|147746353|gb|EDK53430.1| NADH dehydrogenase I, E subunit [Burkholderia mallei FMH]
 gi|147751330|gb|EDK58397.1| NADH dehydrogenase I, E subunit [Burkholderia mallei JHU]
 gi|148029098|gb|EDK87003.1| NADH dehydrogenase I, E subunit [Burkholderia mallei 2002721280]
 gi|157808346|gb|EDO85516.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           406e]
 gi|157938221|gb|EDO93891.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696388|gb|EDP86358.1| NADH dehydrogenase I, E subunit [Burkholderia mallei ATCC 10399]
 gi|169651837|gb|EDS84530.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           S13]
 gi|184211721|gb|EDU08764.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1655]
 gi|217396801|gb|EEC36817.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 576]
 gi|225932608|gb|EEH28606.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237505219|gb|ACQ97537.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238523284|gb|EEP86723.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242137716|gb|EES24118.1| NADH dehydrogenase I, E subunit [Burkholderia pseudomallei 1106b]
 gi|243063698|gb|EES45884.1| NADH dehydrogenase I, E subunit [Burkholderia mallei PRL-20]
 gi|254218806|gb|EET08190.1| NADH-quinone oxidoreductase, E subunit [Burkholderia pseudomallei
           1710a]
          Length = 161

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161


>gi|332528755|ref|ZP_08404732.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
 gi|332041821|gb|EGI78170.1| NADH-quinone oxidoreductase, E subunit [Hylemonella gracilis ATCC
           19624]
          Length = 181

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S  +    ++ +++YP  + QSAV+  L   Q+++GWVS  A   +A  L M  + V E
Sbjct: 13  LSAATLARFSKEVAKYPAEQKQSAVMACLSIVQQEQGWVSSEAEAEIAAYLGMPAMAVHE 72

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  +   PVG +  + VC   PC LR  +K +     K+        +DG  + +E
Sbjct: 73  VTTFYNMYNQRPVG-KFKLNVCTNLPCQLRDGQKALNHLAAKLGISKGETTADGLFTLQE 131

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPG 183
            EC GAC +AP++++   T    ++ ++L+++ID      G +   G
Sbjct: 132 SECLGACADAPVMLVNDRTMCSFMSGDKLDQLIDGLKGVAGGSDSKG 178


>gi|330817788|ref|YP_004361493.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
 gi|327370181|gb|AEA61537.1| ATP synthase subunit E [Burkholderia gladioli BSR3]
          Length = 161

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++ VI++YP  + QSAV+  L  AQ++ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRVIAKYPADQKQSAVMSALAVAQDEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  S 
Sbjct: 63  ATFYTMYELKPVG-KHKLTLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGRFSL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161


>gi|254670957|emb|CBA07627.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 157

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156


>gi|261378536|ref|ZP_05983109.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
 gi|269145086|gb|EEZ71504.1| NADH dehydrogenase, E subunit [Neisseria cinerea ATCC 14685]
          Length = 157

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +++ +    
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIDKKLTELK 157


>gi|302391755|ref|YP_003827575.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
           dehydrogenase diaphorase component iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302203832|gb|ADL12510.1| NADH dehydrogenase subunit E ;anaerobic carbon-monoxide
           dehydrogenase diaphorase component iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 82/154 (53%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +  ++  Y   +    +IP+L  AQ++ G++ +  +  ++  LD+ +  V  +A
Sbjct: 13  EEYLQPLKGILKAYAGKKED--LIPVLQAAQQEYGYLPQPVLREISKELDIFFSEVYGVA 70

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L P G    ++VC  T C +RG +++++  + ++         D   + E V 
Sbjct: 71  TFYSQFHLEPRGE-NIIRVCMGTACHVRGGDEILDKVKAELGIDAGETTDDQKFTLESVA 129

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  AP++ +  DT+  L P+++ +I+D + 
Sbjct: 130 CIGACGLAPVMTVNDDTHGLLVPDKIPDILDQYR 163


>gi|221068608|ref|ZP_03544713.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           KF-1]
 gi|264677202|ref|YP_003277108.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           CNB-2]
 gi|299530746|ref|ZP_07044161.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
 gi|220713631|gb|EED68999.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           KF-1]
 gi|262207714|gb|ACY31812.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni
           CNB-2]
 gi|298721262|gb|EFI62204.1| NADH-quinone oxidoreductase, E subunit [Comamonas testosteroni S44]
          Length = 163

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YP  + QSAV+  L   Q+++GWVS+ +  V+A +L MA I V E+
Sbjct: 3   TEATRERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSQESEAVIAEVLGMAEIAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LR   K +    +K+  K      DG  + ++ 
Sbjct: 63  TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGYKALHHLEHKLGIKMGETTKDGLFTLQQS 121

Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDT 179
           EC GAC ++P++++        ++ E+L+E++D     +G  
Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELVDGLRAAEGKA 163


>gi|253989003|ref|YP_003040359.1| NADH dehydrogenase subunit E [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780453|emb|CAQ83615.1| nadh dehydrogenase i chain e (nadh-ubiquinone oxidoreductase chain
           5 (nuo5) [Photorhabdus asymbiotica]
          Length = 182

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E    ++F  S E    + +    Y   R  +A I  L   Q+  GWV   AI  +A++L
Sbjct: 21  ESQAKANFVLSVEEHDAIEQEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P    
Sbjct: 79  GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            DG  +     C G C   P +MI  DT+  + PE +E++++ +
Sbjct: 138 QDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVKPEEIEKLLEQY 181


>gi|238028139|ref|YP_002912370.1| NADH dehydrogenase subunit E [Burkholderia glumae BGR1]
 gi|237877333|gb|ACR29666.1| ATP synthase subunit E [Burkholderia glumae BGR1]
          Length = 161

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++ V+++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRVVAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  S 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFSL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161


>gi|157363817|ref|YP_001470584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
 gi|157314421|gb|ABV33520.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
          Length = 159

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   V E++ ++     +  +I +L+  Q+    +    +  +A  L++   ++  + 
Sbjct: 2   ERTFEKVEEILKKH--QYKKENLIRILLDVQKNYRHLPEDVVNYIAVALELPPAKIFGVG 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L P G    + VC  T C + G   L++    +++ KP     D   S ++V 
Sbjct: 60  TFYSQFSLKPKGE-YTILVCDGTACHMEGSLSLLKAIEEELNIKPGEVTRDLKFSVDQVG 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C GAC  AP ++I  + Y +LTPE++++II     G+
Sbjct: 119 CLGACALAPAMVINDEVYGNLTPEKVKDIIRKLKEGE 155


>gi|121604334|ref|YP_981663.1| NADH-quinone oxidoreductase subunit E [Polaromonas
           naphthalenivorans CJ2]
 gi|120593303|gb|ABM36742.1| NADH dehydrogenase subunit E [Polaromonas naphthalenivorans CJ2]
          Length = 165

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 2/160 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           SE++    +  +++YP S+ QSAV+  L   Q++ G+VS  + ++VA  L MA I V E+
Sbjct: 7   SEQTKALFDREVAKYPTSQKQSAVMACLQIVQQERGFVSAESEKLVAEYLGMAPIAVHEV 66

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LR   K ++   +K+         DG  + ++ 
Sbjct: 67  TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGAKALQHLEHKLGVAMGETTKDGMFTLQQS 125

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177
           EC GAC ++P++++        ++ E+L+++ID   + + 
Sbjct: 126 ECLGACADSPVMLVNDIHMCSFMSNEKLDQLIDGLKSAEA 165


>gi|254373578|ref|ZP_04989064.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571302|gb|EDN36956.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
          Length = 162

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|118498237|ref|YP_899287.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194324421|ref|ZP_03058194.1| NADH-quinone oxidoreductase, e subunit family [Francisella
           tularensis subsp. novicida FTE]
 gi|118424143|gb|ABK90533.1| NADH dehydrogenase I, E subunit [Francisella novicida U112]
 gi|194321486|gb|EDX18971.1| NADH-quinone oxidoreductase, e subunit family [Francisella
           tularensis subsp. novicida FTE]
          Length = 162

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|332678973|gb|AEE88102.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
           Fx1]
          Length = 162

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|302389111|ref|YP_003824932.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199739|gb|ADL07309.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 170

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S   V+E+I  +   R    +I +L   Q +  ++ +  +  +A  ++++  +V  +ATF
Sbjct: 10  SFQRVDEIIEAH--GRNPVNIISILQEVQNEYRYLPQDVLNYIATAMNISPSKVYGVATF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
           Y  F L P G +  +++C  T C ++    L+     K+  K       D   + E V C
Sbjct: 68  YENFSLEPKG-KYVIRICDGTACHVKNSTALLNALTKKLGLKEGQRTTEDLLFTLETVSC 126

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            GAC  AP++++ ++ +  +TPE+ EEIID 
Sbjct: 127 LGACGLAPVMVVNEEVHGKVTPEKAEEIIDE 157


>gi|218459738|ref|ZP_03499829.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli Kim
           5]
          Length = 164

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALRIAQREHGHLPGPVLEEVANILGVERIWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDLLFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           AC  AP++ +G D + DL   R++ ++D   T
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRT 152


>gi|15597836|ref|NP_251330.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAO1]
 gi|107102160|ref|ZP_01366078.1| hypothetical protein PaerPA_01003210 [Pseudomonas aeruginosa PACS2]
 gi|116050627|ref|YP_790554.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891199|ref|YP_002440065.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa LESB58]
 gi|254235624|ref|ZP_04928947.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
 gi|254241072|ref|ZP_04934394.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
 gi|296388899|ref|ZP_06878374.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PAb1]
 gi|313107678|ref|ZP_07793860.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
 gi|81540767|sp|Q9I0J8|NUOE_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|9948708|gb|AAG06028.1|AE004692_7 NADH dehydrogenase I chain E [Pseudomonas aeruginosa PAO1]
 gi|115585848|gb|ABJ11863.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167555|gb|EAZ53066.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa C3719]
 gi|126194450|gb|EAZ58513.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 2192]
 gi|218771424|emb|CAW27191.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa LESB58]
 gi|310880362|gb|EFQ38956.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa 39016]
          Length = 166

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q+Q GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|325520401|gb|EGC99519.1| NADH dehydrogenase subunit E [Burkholderia sp. TJI49]
          Length = 161

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|116619256|ref|YP_821412.1| NADH-quinone oxidoreductase subunit E [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222418|gb|ABJ81127.1| NADH-quinone oxidoreductase, E subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 160

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + S +      ++++ YPP R +SA+IP+LM AQ++ G VS   I  VA  + +  ++V
Sbjct: 1   MTLSPQLEARFEKLLTSYPPGRQRSAMIPMLMYAQDELGCVSDELIAEVARRIGVTPLQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ T+Y+     P+G + HVQVC    C+L   +KL E    K+        +DG  S 
Sbjct: 61  NEVLTYYSMLHRKPLG-KYHVQVCTNISCLLHDGDKLYEHTCKKLGITHKEVTADGQFSI 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           EEVEC GAC  AP + I  D +  +TPE+L++++D     Q
Sbjct: 120 EEVECMGACSWAPAIQINYDFHHYVTPEKLDQLLDGLRKKQ 160


>gi|77459828|ref|YP_349335.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
 gi|77383831|gb|ABA75344.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFTLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +N +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSEIQNNLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164


>gi|148270499|ref|YP_001244959.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170289106|ref|YP_001739344.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
 gi|147736043|gb|ABQ47383.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermotoga
           petrophila RKU-1]
 gi|170176609|gb|ACB09661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga sp. RQ2]
          Length = 161

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     V E++ +Y     +  +I +L+  QE   ++    I  V+  + +   ++  +A
Sbjct: 2   ERHFEKVEEILKKY--GYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G  ++++    +    P +   D   S ++V 
Sbjct: 60  TFYAQFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP+++I  + Y +LT ++++EI+      + ++
Sbjct: 119 CLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERES 158


>gi|241667719|ref|ZP_04755297.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876263|ref|ZP_05248973.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842284|gb|EET20698.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 162

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAKEDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILTHIEKKLGIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|226365384|ref|YP_002783167.1| NADH dehydrogenase subunit E [Rhodococcus opacus B4]
 gi|226243874|dbj|BAH54222.1| NADH-quinone oxidoreductase chain E [Rhodococcus opacus B4]
          Length = 307

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 6/181 (3%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           VR  A EE  P+  +         + V++RYP SR  SA++PLL   Q ++G ++ A +E
Sbjct: 27  VRPGAREEHPPAVRA---RLDADADVVVARYPNSR--SALLPLLHLVQAEDGCITPAGVE 81

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
             A  L +    V  +ATFY+ ++  P G    V VC  T C + G + ++      +  
Sbjct: 82  FCAGRLGLTGAEVAAVATFYSMYRRDPTGDYY-VGVCTNTLCAVMGGDAILAALEAHLDL 140

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                 +DG ++ E +EC  AC  AP+VM+  + +++  PE    ++DA  +G   +   
Sbjct: 141 PHGGTTADGKVTLEHIECNAACDYAPVVMVNWEFFDNQNPESARSLVDALRSGDRVSPSR 200

Query: 183 G 183
           G
Sbjct: 201 G 201


>gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS    +     P     + E    ++ +I  Y        ++P+L   QE+ G +  A 
Sbjct: 1   MSAHCHSHSTPAP---EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPAV 55

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + +A  L++    V  + +FY+ +   P G +  ++ C + PC ++G + L+E  + ++
Sbjct: 56  QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                H   DG  + E   C G C  AP + I +  + +LT +++ +I+  +  G+    
Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174

Query: 181 RPGPQ--IDRISSAPAGGLTSLLDN 203
           +  P       S   A G   LL+N
Sbjct: 175 KKLPYSTNAFRSYKQAPGELILLEN 199


>gi|187923344|ref|YP_001894986.1| NADH dehydrogenase subunit E [Burkholderia phytofirmans PsJN]
 gi|187714538|gb|ACD15762.1| NADH-quinone oxidoreductase, E subunit [Burkholderia phytofirmans
           PsJN]
          Length = 161

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW++   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALATAQEEHGWLTPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G +   E  + K+        +DG  + 
Sbjct: 63  ATFYTMYETSPVG-KYKITLCTNLPCQLGPDGGSDSAAEYLKQKLGIDFGETTADGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++  +++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNHRMCSFMSRAKIDQLLEELSK 161


>gi|254805713|ref|YP_003083934.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
 gi|254669255|emb|CBA08145.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha14]
          Length = 157

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++  AI  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPEAIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|219667453|ref|YP_002457888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219537713|gb|ACL19452.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 160

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + ++++ +   R + A+IP+L  AQ   G++    I+ ++  L +   +V  + TFY
Sbjct: 13  EEQLEQILAHH--KREKGALIPVLQEAQGLYGYLPEHVIKHISRGLGIPSAKVYGVVTFY 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+L+P+G R  + VC  T C +RG  K++E        K      DG  + E V C G
Sbjct: 71  AQFRLTPMG-RNVISVCLGTACHVRGGAKVLEAIEKDTKIKDGQTTEDGRFTLEIVNCIG 129

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           AC  AP++ I  + +  L  +++  I+  + 
Sbjct: 130 ACGLAPVMSINGNVHGRLNADQIPGILAEYK 160


>gi|295676041|ref|YP_003604565.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
 gi|295435884|gb|ADG15054.1| NADH-quinone oxidoreductase, E subunit [Burkholderia sp. CCGE1002]
          Length = 161

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQ + GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAVAKYPADQKQSAVMSALATAQTEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++ SPVG +  + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYETSPVG-KFKITLCTNLPCQLGPDGGSESAAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVMLVNNQRMCSFMSREKIDQLLEELSK 161


>gi|304389070|ref|ZP_07371114.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
 gi|304336943|gb|EFM03133.1| NADH-quinone oxidoreductase subunit E [Neisseria meningitidis ATCC
           13091]
          Length = 157

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156


>gi|238751245|ref|ZP_04612739.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
 gi|238710519|gb|EEQ02743.1| NADH-quinone oxidoreductase subunit E [Yersinia rohdei ATCC 43380]
          Length = 187

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S E    +      Y  +R  +A I  L   Q++ GWV   AI  +A++L +    V
Sbjct: 33  FELSAEERDAIEHEKHHYEDAR--AASIEALKIVQKKRGWVPDGAIYAIADVLGIPASDV 90

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG R  ++ C +  C + G + +      K+  +P     DG  + 
Sbjct: 91  EGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAISKKLSIQPGQTTFDGRFTL 149

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C   P +MI  DT+  L PE +E++++ +
Sbjct: 150 LPTCCLGNCDRGPTMMIDDDTHSYLKPEDIEKLLEQY 186


>gi|107023184|ref|YP_621511.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116690266|ref|YP_835889.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|134296429|ref|YP_001120164.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|170733605|ref|YP_001765552.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia MC0-3]
 gi|206560699|ref|YP_002231464.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia J2315]
 gi|254247661|ref|ZP_04940982.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|105893373|gb|ABF76538.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia AU 1054]
 gi|116648355|gb|ABK08996.1| NADH dehydrogenase subunit E [Burkholderia cenocepacia HI2424]
 gi|124872437|gb|EAY64153.1| NADH dehydrogenase (ubiquinone) [Burkholderia cenocepacia PC184]
 gi|134139586|gb|ABO55329.1| NADH dehydrogenase subunit E [Burkholderia vietnamiensis G4]
 gi|169816847|gb|ACA91430.1| NADH-quinone oxidoreductase, E subunit [Burkholderia cenocepacia
           MC0-3]
 gi|198036741|emb|CAR52641.1| putative NADH dehydrogenase I chain E [Burkholderia cenocepacia
           J2315]
          Length = 161

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELKPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|294669096|ref|ZP_06734182.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309088|gb|EFE50331.1| NADH dehydrogenase, E subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 157

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  R +SA++  L  AQ ++GW++   IE VA+ + +  ++  E
Sbjct: 2   LSAESLKQIDTELAKYPAERHRSAIMGALRIAQTEKGWLAPETIEFVADYIGIPPVQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E  +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEAKLAEL 156


>gi|152985085|ref|YP_001347931.1| NADH dehydrogenase subunit E [Pseudomonas aeruginosa PA7]
 gi|150960243|gb|ABR82268.1| NADH dehydrogenase I chain E [Pseudomonas aeruginosa PA7]
          Length = 166

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|82702145|ref|YP_411711.1| NADH-quinone oxidoreductase, E subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410210|gb|ABB74319.1| NADH dehydrogenase subunit E [Nitrosospira multiformis ATCC 25196]
          Length = 168

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE+    +      YP +R  +  I  L   Q+  GWVS   I  VA  L M    +  
Sbjct: 2   LSEQERKEIEAHARHYPNNR--AVCIEALKIVQQHRGWVSNEGIADVAEALQMKPAELES 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG +  + +C +  C + G E+L +   +++  +P    +DG  +   
Sbjct: 60  VATFYNMIFRKPVG-KHVILLCDSVSCWIMGYERLRQHLGDRLGIRPGQTTADGRFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
             C GAC +AP++M+    Y+DL P R+++I+ ++   +  +
Sbjct: 119 NVCLGACDHAPVMMVDDAHYQDLDPARIDQILASYQQEEEKS 160


>gi|58582855|ref|YP_201871.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624720|ref|YP_452092.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577692|ref|YP_001914621.1| NADH dehydrogenase subunit E [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427449|gb|AAW76486.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368660|dbj|BAE69818.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522144|gb|ACD60089.1| NADH-ubiquinone oxidoreductase Nqo2 subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 175

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLAKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K      DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTVDGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|294624674|ref|ZP_06703344.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666773|ref|ZP_06732007.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601030|gb|EFF45097.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603434|gb|EFF46851.1| ATP synthase subunit E [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 175

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            SE++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSEKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|62262937|gb|AAX78114.1| unknown protein [synthetic construct]
          Length = 197

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 34  SPQAREDIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 93

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 94  VATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKE 152

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 153 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 187


>gi|307266698|ref|ZP_07548226.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326391449|ref|ZP_08212985.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918300|gb|EFN48546.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325992528|gb|EGD50984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 160

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F +E      + +          ++I ++  AQE  G++       ++  +++    + 
Sbjct: 7   KFGKEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + +C  T C +RG   ++   + K+  +      DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ ++EI+  F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159


>gi|150020390|ref|YP_001305744.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149792911|gb|ABR30359.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 157

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   V E++ ++   +    +I +L+  Q++   + +  +  ++  LD+   ++  +A
Sbjct: 2   ERTFSKVEEILEKHNYEKK--NLIKILLDVQKEYRHIPKEVVNYISVALDIPPAKIFGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G    + +C  T C + G   L++    ++  KP     D   S ++V 
Sbjct: 60  TFYAQFSLKPKGE-YTILICDGTACHMEGSMGLVKAIEEELGIKPGEVTQDLKFSLDKVG 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP ++I  + Y  LTPE+ +EI+     G
Sbjct: 119 CLGACALAPAMVINGEVYGKLTPEKTKEILRKLKEG 154


>gi|37526974|ref|NP_930318.1| NADH dehydrogenase subunit E [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786407|emb|CAE15460.1| NADH dehydrogenase I chain E (NADH-ubiquinone oxidoreductase chain
           5) (NUO5) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 182

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E    + F  S E    +      Y   R  +A I  L   Q+  GWV   AI  +A++L
Sbjct: 21  ESQAKADFVLSTEEHDAIEHEKHHYEDPR--AASIEALKIVQKHRGWVPDGAIYAIADVL 78

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P    
Sbjct: 79  GIPASDVEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEKHLNICPGQTT 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            DG  +     C G C   P +MI  DT+  + PE +E++++ +
Sbjct: 138 KDGRFTLLPTCCLGNCDKGPTMMIDDDTHSSVRPEEIEKLLEQY 181


>gi|296313743|ref|ZP_06863684.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839666|gb|EFH23604.1| NADH dehydrogenase, E subunit [Neisseria polysaccharea ATCC 43768]
          Length = 157

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|217967305|ref|YP_002352811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336404|gb|ACK42197.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 162

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            FS+ +   + +++ ++  ++   ++I +L   QE+ G++ + A+E+V+  L +    + 
Sbjct: 6   KFSDYAQRELEKILDQFSSTK--GSLIMILHAIQEKFGYLPKEALEMVSEKLKIPLSEIY 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F+L P G +  +++C  T C ++G   L+      I  K      DG  S +
Sbjct: 64  GVVTFYSFFRLEPQG-KHVIRLCMGTACYVKGAADLLTALEQ-IGLKEGKVTEDGYFSLD 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            V C GAC  AP +MI ++ Y  LTP++L+++I+ F  
Sbjct: 122 LVRCIGACSMAPALMIDEEVYGKLTPDKLKKLIENFRK 159


>gi|160900608|ref|YP_001566190.1| NADH-quinone oxidoreductase subunit E [Delftia acidovorans SPH-1]
 gi|160366192|gb|ABX37805.1| NADH-quinone oxidoreductase, E subunit [Delftia acidovorans SPH-1]
          Length = 163

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +       +++YP  + QSAV+  L   Q+++GWVS  +  V+A  L MA I V E+
Sbjct: 3   TEATKERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   P GT   + VC   PC LR   K +    +++  K      DG  + ++ 
Sbjct: 63  TTFYNMYNQRPTGT-YKLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQS 121

Query: 139 ECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDT 179
           EC GAC ++P++++        ++ E+L+E+ID     +G  
Sbjct: 122 ECLGACADSPVMLVNDRCMCSFMSNEKLDELIDGLRAAEGKA 163


>gi|332184792|gb|AEE27046.1| NADH-ubiquinone oxidoreductase chain E [Francisella cf. novicida
           3523]
          Length = 162

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAREDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYDLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGQTTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 161


>gi|288574745|ref|ZP_06393102.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570486|gb|EFC92043.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 156

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + E     +E++S  P       +IP+L   Q + G++   A++ V+  L +    +  +
Sbjct: 5   TTEVIARTSEIVS--PWKSKHGGLIPILQSIQGEFGYLPTEALKTVSKDLKIPEAEIYGV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY QF L+P G R  V+VC  T C +RG +K++++ +            D   + E V
Sbjct: 63  ATFYAQFHLNPRG-RHVVRVCRGTACHVRGSQKILDMVKEITGINENETTKDLRFTIEPV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            C GAC  AP++M+   T+  L P ++ EI++ F
Sbjct: 122 ACLGACGLAPVMMVDDQTFGRLEPSKVREILEKF 155


>gi|56478180|ref|YP_159769.1| NADH dehydrogenase subunit E [Aromatoleum aromaticum EbN1]
 gi|56314223|emb|CAI08868.1| NADH dehydrogenase I, chain E [Aromatoleum aromaticum EbN1]
          Length = 159

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S++S   ++  I++YPP + QSAV+  L  AQ + GW+++  IE VA  LDM  I   E
Sbjct: 2   LSQKSLQQIDREIAKYPPDQKQSAVMSALRIAQIEMGWLAKETIEFVAGYLDMPAIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG R  + VC   PC L G     +  + K+         DG  + +E
Sbjct: 62  VASFYNMYDLQPVG-RHKITVCTNLPCALSGGVHAADYVKQKLGIDFNETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E++++++   
Sbjct: 121 GECMGACGDAPVLLVNNHHMCSWMTTEKIDQLLADL 156


>gi|148546981|ref|YP_001267083.1| NADH dehydrogenase subunit E [Pseudomonas putida F1]
 gi|148511039|gb|ABQ77899.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida F1]
          Length = 165

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVNQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|78067042|ref|YP_369811.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170698113|ref|ZP_02889193.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
 gi|77967787|gb|ABB09167.1| NADH dehydrogenase subunit E [Burkholderia sp. 383]
 gi|170136971|gb|EDT05219.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 161

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELNPVG-KHKITLCTNLPCQLGPDGGAEATADYLKQKLGIGFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|197285617|ref|YP_002151489.1| NADH dehydrogenase subunit E [Proteus mirabilis HI4320]
 gi|227356120|ref|ZP_03840510.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
 gi|194683104|emb|CAR43661.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis HI4320]
 gi|227163765|gb|EEI48677.1| NADH-quinone oxidoreductase chain E [Proteus mirabilis ATCC 29906]
          Length = 181

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  ++E    + +    Y   R  +A I  L   Q+  GWV   AI  +A++L +   
Sbjct: 25  NTFVLTQEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P     DG  
Sbjct: 83  DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNILPGQTTPDGRF 141

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +M+  DT+  + PE +E +++ +
Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180


>gi|167562181|ref|ZP_02355097.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis EO147]
 gi|167569426|ref|ZP_02362300.1| NADH dehydrogenase subunit E [Burkholderia oklahomensis C6786]
          Length = 161

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVGT   + +C   PC L    G E   E  + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVGT-HKITLCTNLPCQLGPHGGAEATAEYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSFMSREKIDQLLEELSK 161


>gi|220931028|ref|YP_002507936.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
 gi|219992338|gb|ACL68941.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
          Length = 167

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   VNE+I ++   + QS +IP+L   Q++  ++    +  +A ++D++   V  +ATF
Sbjct: 10  NFTRVNEIIEKH--GKDQSKLIPILQEVQKEYRYLPEEILTYIATVMDLSPATVYGVATF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
           Y QF L P G +  + VC  T C + G   ++   R K++ +       D   + E V C
Sbjct: 68  YAQFSLDPKG-KYVINVCDGTACHVSGSLPVLNAIRKKLNLEDGKFTTDDLMFTVETVSC 126

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP+V I    Y  +TPE +E IID  
Sbjct: 127 LGACGLAPVVTINGKVYGKMTPEAIEVIIDEL 158


>gi|325135048|gb|EGC57676.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M13399]
 gi|325145238|gb|EGC67517.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325145309|gb|EGC67587.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240013]
 gi|325205330|gb|ADZ00783.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M04-240196]
          Length = 157

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA  + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVAEYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCGFMTEEAIEKKLAEL 156


>gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS          P+    + E    ++ +I  Y        ++P+L   QE+ G +    
Sbjct: 1   MSAH--CHSHSAPAP-EITPEQWNAIDSIIESY--RNVPGNLMPVLQAVQEEIGCLPPTV 55

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + +A  L++    V  + +FY+ +   P G +  ++ C + PC ++G + L+E  + ++
Sbjct: 56  QDRIATGLNIPGSDVFGVMSFYSMYTWRPKG-KYVIRFCESPPCHIQGADNLLEFTQAEL 114

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                H   DG  + E   C G C  AP + I +  + +LT +++ +I+  +  G+    
Sbjct: 115 GVPLKHTTKDGLFTLETTACLGVCEVAPAMQINEVVHGNLTKDKIRQILADYRAGKAPDY 174

Query: 181 RPGPQ--IDRISSAPAGGLTSLLDN 203
           +  P       S   A G   LL+N
Sbjct: 175 KKLPYSTNAFRSYKQAPGELILLEN 199


>gi|94676865|ref|YP_588822.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94220015|gb|ABF14174.1| NADH-quinone oxidoreductase, E subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 167

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
            ++F  + E    + +  ++Y  +R  S  I  L   Q+Q GWV  +AI+ +AN L ++ 
Sbjct: 10  DTNFKLNPELYQAIQQEKNKYEDARAVS--IEALKMVQKQYGWVPDSAIQAIANTLGISG 67

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V E+ATFY+     PVG R  ++ C +  C + G + +     N ++ KP     DG 
Sbjct: 68  SDVEEVATFYSNIFRQPVG-RHVIRYCNSVVCYITGYQTIQTKLENCLNIKPGKTTPDGR 126

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +     C G C   P +MI  DTY  LT E + ++++ +
Sbjct: 127 FTLLPTCCLGNCDKGPTMMINDDTYVHLTAENICQLLELY 166


>gi|218961475|ref|YP_001741250.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit gamma (hymA-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730132|emb|CAO81044.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit gamma (hymA-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 151

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           + E+  +Y P   +  +I +L   Q+Q  + ++S  A++ VA  LD+    +  + TFYT
Sbjct: 2   IKEICQKYAP--RKDNLIQILHEIQDQDPQHYISPEAVDTVAEYLDIPVNHIYGVLTFYT 59

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +   P G +  +++C + PC ++G + ++   +  +         DG  + E   C G 
Sbjct: 60  MYSTKPRG-KNIIRLCESPPCYIKGSDNMLRKLKVLLGINIGETTKDGLFTLEFTSCLGV 118

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C NAP++MI  D Y DLT E++EEII+   
Sbjct: 119 CGNAPVMMINDDVYGDLTEEKVEEIIERIR 148


>gi|134299711|ref|YP_001113207.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052411|gb|ABO50382.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
          Length = 160

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           SF +     + E  +RY       ++IP+L  AQE  G++S   ++ +A  L++ Y +V 
Sbjct: 7   SFKDPKQKALKETFARY--QGTSGSLIPILQEAQEIYGYLSGEVMQQIARELNIPYSKVY 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY QF L P G R  +++C  T C ++G ++L+E  R     +      D   + E
Sbjct: 65  GVVTFYAQFHLRPRG-RNIIRICTGTACHVKGADRLLETVREATGLEGEGTTEDLRYTLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP +MI +DTY  LTP +   I+  + 
Sbjct: 124 TVACLGACGLAPAMMINEDTYGRLTPVKALNILKQYQ 160


>gi|147678984|ref|YP_001213199.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146275081|dbj|BAF60830.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 162

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++E A  + +++ +Y   +    +IP+L  AQ   G++ +  ++ ++  L++ + +V  
Sbjct: 12  LTKEEA--LQKLLDQYRDYK--GGLIPVLQEAQNIYGYLPKEVLQQISKELNVPFSKVFG 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY QF L P G R  ++VC  T C +RG  K+ E  R+ +         D   + E 
Sbjct: 68  VATFYAQFHLKPRG-RNIIRVCLGTACHVRGGAKIYEAVRDHLGISHGETTDDLRYTIEN 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           V C GAC  +P +M+  DT+  L P R+  I+D +
Sbjct: 127 VACIGACGLSPCMMVNNDTHGRLVPSRVPAILDQY 161


>gi|115352334|ref|YP_774173.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171316307|ref|ZP_02905528.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|172061205|ref|YP_001808857.1| NADH dehydrogenase subunit E [Burkholderia ambifaria MC40-6]
 gi|115282322|gb|ABI87839.1| NADH dehydrogenase subunit E [Burkholderia ambifaria AMMD]
 gi|171098533|gb|EDT43334.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MEX-5]
 gi|171993722|gb|ACB64641.1| NADH-quinone oxidoreductase, E subunit [Burkholderia ambifaria
           MC40-6]
          Length = 161

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  +++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  + V E+
Sbjct: 3   SAEGLKEIDRALTKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAVAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E   +  + K+         DG  + 
Sbjct: 63  ATFYTMYELNPVG-KHKITLCTNLPCQLGPHGGAEATADYLKQKLGIGFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC G+C +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECMGSCGDAPVLLVNNHRMCSFMSREKIDQLLEELSK 161


>gi|167627157|ref|YP_001677657.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597158|gb|ABZ87156.1| NADH dehydrogenase I, E subunit [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 162

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E
Sbjct: 8   SPQAKEDIDRVLSKFPVDQRRSAILEGLHILQDQNGGYLTNDLQTALAEYLQVSKVDVYE 67

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  ++L PVG R  + +C    CML G   ++     K+  KP     DG ++ +E
Sbjct: 68  VATFYCMYELKPVG-RHKLNLCTNVSCMLNGAYDILAHIEKKLGIKPGETTKDGRITLKE 126

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           VECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 127 VECQGACCGSPMLEVDKIFYENLTIEKVNQIIDSL 161


>gi|164687261|ref|ZP_02211289.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
           16795]
 gi|164603685|gb|EDQ97150.1| hypothetical protein CLOBAR_00902 [Clostridium bartlettii DSM
           16795]
          Length = 176

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 7/155 (4%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++   ++E++  Y   + +  +I +L +AQ+  G++S   +  ++    +   ++  +AT
Sbjct: 12  DNLKELDEILETY--GKKKGYLITILQKAQDAYGYISIDIMNRISEFTGIKVAKIYGVAT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY QF+L P+G +  + +C  T C + G E + +V   +++ K      DG  +  +V C
Sbjct: 70  FYAQFRLQPIG-KYLIMLCQGTACHVNGSEMISQVISEQLNIKDGETTEDGLFTLNQVSC 128

Query: 141 QGACVNAPMVMI----GKDTYEDLTPERLEEIIDA 171
            G C  AP++MI      +TY +LT + + EI++ 
Sbjct: 129 LGCCSLAPVMMIKTEDSDETYGNLTKDSVIEILNQ 163


>gi|261364351|ref|ZP_05977234.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
 gi|288567615|gb|EFC89175.1| NADH dehydrogenase, E subunit [Neisseria mucosa ATCC 25996]
          Length = 157

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|21243428|ref|NP_643010.1| NADH dehydrogenase subunit E [Xanthomonas axonopodis pv. citri str.
           306]
 gi|78048405|ref|YP_364580.1| NADH dehydrogenase subunit E [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325924679|ref|ZP_08186117.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
 gi|21108981|gb|AAM37546.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036835|emb|CAJ24528.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|325544885|gb|EGD16230.1| NADH dehydrogenase subunit E [Xanthomonas perforans 91-118]
          Length = 175

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  ++++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLTKFPPDRKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETERVG-RHNVAFCTNISCWLNGAEDLLAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E+++ ++D  
Sbjct: 138 REEECLAACSAAPMMVINGHYHEHLTKEKVDALLDGL 174


>gi|254674108|emb|CBA09892.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Neisseria
           meningitidis alpha275]
 gi|261391777|emb|CAX49232.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis 8013]
 gi|325131609|gb|EGC54316.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M6190]
 gi|325139136|gb|EGC61682.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           ES14902]
 gi|325143086|gb|EGC65433.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325143156|gb|EGC65502.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           961-5945]
 gi|325197531|gb|ADY92987.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           G2136]
          Length = 157

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|83590720|ref|YP_430729.1| NADH-quinone oxidoreductase, E subunit [Moorella thermoacetica ATCC
           39073]
 gi|83573634|gb|ABC20186.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
          Length = 159

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M  RR    E QP         A  + ++++RY   +   A+IP+L   QE  G++   A
Sbjct: 1   MGSRR----EVQPMP-------AETIKQIVARYQEEK--GALIPVLQATQEALGYLPPEA 47

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           ++ +A  +D+    V  + TFY QF L P G R  + VC  T C +RG  +++   +  +
Sbjct: 48  LKEIAAAMDLPLSTVYSVVTFYAQFHLQPRG-RHVIHVCQGTACHIRGGNRILNRIKELL 106

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                    D   + E V C GAC  AP++ I  DTY  L P+ +  I++ + 
Sbjct: 107 QIDAGETTPDLRFTLEPVACLGACALAPVMSISGDTYGHLKPDMIAGILEKYQ 159


>gi|296274179|ref|YP_003656810.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
           7299]
 gi|296098353|gb|ADG94303.1| NADH-quinone oxidoreductase, E subunit [Arcobacter nitrofigilis DSM
           7299]
          Length = 158

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F +++E+         +YP  +  + ++P L   QEQEGWVS  A+  VA+ +    I
Sbjct: 2   AKFQYTKENEEKFQITAKKYP--KIDAMLLPALWLVQEQEGWVSPEAMIFVADKIGKQPI 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E ATFYT F L P+GT  H+++C T  CML G   L +  ++ I  +P   ++DG  
Sbjct: 60  EVYEFATFYTMFNLKPIGT-YHIELCKTLSCMLMGANNLKKFIKDTIGIEPGQTSADGKF 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              EVEC GAC  APM  +    +E+ T E L+ +I+   
Sbjct: 119 HLSEVECLGACGGAPMFALNGQYHENQTVESLKNLIEECK 158


>gi|330958156|gb|EGH58416.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 165

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDMLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|26990816|ref|NP_746241.1| NADH dehydrogenase subunit E [Pseudomonas putida KT2440]
 gi|325277475|ref|ZP_08143080.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
 gi|24985822|gb|AAN69705.1|AE016606_8 NADH dehydrogenase I, E subunit [Pseudomonas putida KT2440]
 gi|324097391|gb|EGB95632.1| NADH dehydrogenase subunit E [Pseudomonas sp. TJI-51]
          Length = 165

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|329118902|ref|ZP_08247597.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464930|gb|EGF11220.1| NADH-quinone oxidoreductase subunit E [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 157

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + ES   ++  +++YP  R +SAV+  L  AQ ++GW++   IE VA+ + +A +   E
Sbjct: 2   LTPESLKQIDIELAKYPADRRRSAVMAALRIAQTEKGWLAPETIEFVADYIGIAPVAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYNLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKKKLGIGYGETTPDGKFTLIE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173
            EC GAC +AP++++        +T E +E+ +    
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEQKLAELQ 157


>gi|154248926|ref|YP_001409751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152862|gb|ABS60094.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 157

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   V +++ +Y     +  +I +L+  Q++   + R  +  +   L +   ++  +ATF
Sbjct: 4   TFDKVEKILEKY--GYKKEMLIKILLEVQKEYRHIPREVVNYIGVALGIPPAKIYGVATF 61

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L P G    + +C  T C + G   L++    ++  KP     D   S ++V C 
Sbjct: 62  YAQFSLKPKGE-YTILICDGTACHMEGSMSLVKAIEEEVGIKPGEVTPDLKFSLDKVGCL 120

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           GAC  AP ++I  + Y +L PE+++EI+      + +
Sbjct: 121 GACALAPAMVINGEVYGNLKPEKVKEILRNLKERKAE 157


>gi|49081510|gb|AAT50155.1| PA2640 [synthetic construct]
          Length = 167

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 7   IQTDRFVLSETERSSIEHEMHHYEDPR--AASIEALKIVQKRRGWVPDGAIPAIGEVLGI 64

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        +D
Sbjct: 65  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTAD 123

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P+ + ++++A+
Sbjct: 124 GRFTLLPVCCLGNCDKAPALMIDDDTHGDVRPDGVAKLLEAY 165


>gi|182412306|ref|YP_001817372.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
 gi|177839520|gb|ACB73772.1| NADH-quinone oxidoreductase, E subunit [Opitutus terrae PB90-1]
          Length = 162

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +   E+   ++EVI+ YP  R  SA +PLL   QE  G++   A E +A  L++  I V
Sbjct: 1   MNLKPETLQKIDEVITHYPTKR--SATLPLLHLIQEDIGYIPAEAHEWIAAKLEIQPINV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  F+  P+G R  V+VC T  C LRG  K+ E    + + K    + DG ++ 
Sbjct: 59  YEVVTFYPMFRQKPIGRRH-VKVCRTLSCALRGGYKVCEQFEKEFNTKTGEISPDGEVTV 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           E VEC  +C  AP+VMI  D +E++   + +++ +    
Sbjct: 118 EFVECLASCGTAPVVMIDDDLHENVDAAKAKQLAEQIKA 156


>gi|218674604|ref|ZP_03524273.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           GR56]
          Length = 170

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I + E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWIYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
           AC  AP++ +G D + DL   R++ ++D   T  G         D  S+AP G
Sbjct: 121 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRTEAGQAT----GADLASAAPPG 169


>gi|167034690|ref|YP_001669921.1| NADH dehydrogenase subunit E [Pseudomonas putida GB-1]
 gi|166861178|gb|ABY99585.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida GB-1]
          Length = 165

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIHAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164


>gi|291613542|ref|YP_003523699.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583654|gb|ADE11312.1| NADH-quinone oxidoreductase, E subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 161

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S++    +++ + +YP  + QSAV+  L   Q+++GW++   +  +A  + M  + V E
Sbjct: 2   LSQQITTLIDKELKKYPADQRQSAVMAALRFVQDEKGWIAPDDMADIAAYIGMPQMAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L P+G +  + VC    C L G ++ +     ++        +DG     E
Sbjct: 62  VATFYHMYNLKPMG-KYTLTVCTNLSCQLCGSDETLAHLNKRLGIGLGEVTADGKYGLRE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177
            EC GACV+APM  I        LT E++++I+     GQ 
Sbjct: 121 GECMGACVDAPMFTINNKKLCGRLTSEKIDQILAELDGGQA 161


>gi|291004455|ref|ZP_06562428.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 244

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 8/188 (4%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +   +S  F E+      ++I RYP SR  SA++P+L   Q  +G VS   IE  A  LD
Sbjct: 3   DMSNTSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLD 60

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-- 127
           ++   V  +ATFYT ++  P G    V VC  T C   G + +       +         
Sbjct: 61  LSTAEVSAVATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAG 119

Query: 128 --NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG-P 184
               +G+L+ E  EC  AC   P++ +  + Y++ TPE+  E++ A   G+      G P
Sbjct: 120 TPGEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRGAP 179

Query: 185 QIDRISSA 192
             D   + 
Sbjct: 180 LSDFRGAE 187


>gi|158319964|ref|YP_001512471.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158140163|gb|ABW18475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 166

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A+IP L + Q   G++   A+ +V+  LD+   ++  +A+FY+ F L P G    + V
Sbjct: 32  EGALIPALHKIQSIYGYLPEEALILVSEELDIPITQIYGVASFYSLFSLEPKGQ-HVISV 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G + ++E   ++++ +  +   DG  + +   C GAC  AP++MI +  Y 
Sbjct: 91  CLGTACYVKGSQNILERLSSELNIQEGNTTEDGKFTLQATRCIGACGLAPVIMIDEKVYG 150

Query: 159 DLTPERLEEIIDAFST 174
            LTP  + +I+  ++ 
Sbjct: 151 RLTPSDVPKILSEYTE 166


>gi|325203362|gb|ADY98815.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240355]
          Length = 157

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     +  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGVNAADYLKQKLGIGFGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEVIEKKLAEL 156


>gi|154249674|ref|YP_001410499.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153610|gb|ABS60842.1| NADH-quinone oxidoreductase, E subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 161

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           +NE+       R    ++ LL R Q+     ++     E++A  L++   +V E+ TFYT
Sbjct: 10  INEIKEESLEER--DMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYT 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G +  ++VC + PC + G  ++++  + K+         DG  + EE  C G 
Sbjct: 68  MFSTKPRG-KYIIRVCTSLPCHVPGGREIVQFLKQKLGVDFGETTKDGLFTLEETGCLGL 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           C  +P++M+    Y DLT E++ EII+    G+G 
Sbjct: 127 CGVSPVIMVNDQYYGDLTVEKVNEIIENLKGGEGK 161


>gi|121634117|ref|YP_974362.1| NADH dehydrogenase subunit E [Neisseria meningitidis FAM18]
 gi|120865823|emb|CAM09555.1| NADH dehydrogenase I chain E [Neisseria meningitidis FAM18]
 gi|308388465|gb|ADO30785.1| NADH dehydrogenase I chain E [Neisseria meningitidis alpha710]
          Length = 157

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|313669282|ref|YP_004049566.1| NADH dehydrogenase I chain E [Neisseria lactamica ST-640]
 gi|309379799|emb|CBX21575.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006744|emb|CBN88214.1| NADH dehydrogenase I chain E [Neisseria lactamica 020-06]
          Length = 157

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|297570900|ref|YP_003696674.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931247|gb|ADH92055.1| NADH-quinone oxidoreductase, E subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 226

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      E+       +I+RYP SR  SA++PLL   Q  +G+ S   I +VA+IL +  
Sbjct: 4   PYEPQVEEKFRQDAAAIIARYPQSR--SAIMPLLHLVQSVDGFCSPRGITLVADILGLTR 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFY+Q++  P G   +V VC    C + G + + +     +         DG 
Sbjct: 62  AQVSAVATFYSQYRRHPNGE-YNVGVCTNALCAVMGGDLIWDELSEYVGVGHDETTQDGK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           ++ E++EC   C  AP+VM+  + +++ TPE  ++I+D    G       GP+
Sbjct: 121 ITLEQLECNAGCDYAPVVMVNWEFFDNQTPETAKKIVDDIRAGHDIHPTRGPE 173


>gi|217076872|ref|YP_002334588.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217036725|gb|ACJ75247.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 157

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   V E++ ++   +    +I +L+  Q++   + +  +  ++  LD+   ++  +A
Sbjct: 2   ERNFEKVEEILKKHGYEKK--NLIKILLDVQKEYRHIPKEVVNYLSVALDIPPAKIFGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G    + +C  T C + G   LI+    ++  KP     D   S ++V 
Sbjct: 60  TFYAQFSLKPKGE-YTILICDGTACHMEGSMSLIKAIEEEVGVKPGEVTQDLKFSLDKVG 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP ++I  + Y +LTPE+ +EI+     G
Sbjct: 119 CLGACALAPAMVINGEVYGNLTPEKTKEILRKLKEG 154


>gi|170721054|ref|YP_001748742.1| NADH dehydrogenase subunit E [Pseudomonas putida W619]
 gi|169759057|gb|ACA72373.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas putida W619]
 gi|313498028|gb|ADR59394.1| NADH dehydrogenase subunit E [Pseudomonas putida BIRD-1]
          Length = 165

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVSKLLEGY 164


>gi|94968340|ref|YP_590388.1| NADH-quinone oxidoreductase, E subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550390|gb|ABF40314.1| NADH dehydrogenase subunit E [Candidatus Koribacter versatilis
           Ellin345]
          Length = 160

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             FS+    W  E    YP  R  S ++P L+  Q++ G++S  AI  +AN +++  + V
Sbjct: 1   MKFSDNLEKWFAEAQGHYPTKR--SPLVPFLLYVQDEVGYLSDEAIVEIANRVELTPLEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + ++Y+  +  P+G + +VQVC    C+ RG E + E C+  +         DG  S 
Sbjct: 59  RNVISYYSMLRTKPIG-KYNVQVCTNICCLQRGGEDIFEHCKKTLGIGHKQTTPDGLFSL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           EEVEC GAC  AP V +  D +E+LTPE ++ +I+++   +
Sbjct: 118 EEVECIGACSWAPAVQVNYDFHENLTPETMDAVIESYRKRE 158


>gi|285017796|ref|YP_003375507.1| NADH-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e)
           (ndh-1, chain e) (nuo5) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473014|emb|CBA15519.1| probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI
           chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 175

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
            S+++   ++  +S++PP R +SAV+  L  AQEQ +GW++   I  VA  L++  +   
Sbjct: 19  LSDKTRAHIDHWLSKFPPERKRSAVLQGLHAAQEQNQGWLTDELIVGVAKYLELPPVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+A+FY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVASFYSMFETEKVG-RHNVAFCTNISCWLNGAEDLVAHAEKKLGCKLGQSTADGRVYLK 137

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              EC   C  APM++I    +E LT ++++ ++D  
Sbjct: 138 REEECLAGCAGAPMMVINGHYHEHLTKDKVDALLDGL 174


>gi|223558017|gb|ACM91023.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 161

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             +E++ + + ++ + Y  +     +I +L + Q   G++     +VVA+ L +   RV 
Sbjct: 7   KITEDNYLKIKDICASY--NNNPGELINVLHKTQGTFGYLPEEVQQVVADCLGIPVGRVY 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ F + P G +  + VC  T C ++G EK+++  ++++         DG  S +
Sbjct: 65  GVVSFYSFFTMKPKG-KYAISVCLGTACYVKGAEKILDALKSELKISEGGVTEDGKFSLD 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + C GAC  AP++ I   TY  L PE ++EI+  ++ 
Sbjct: 124 VLRCVGACGLAPVMTINGKTYGRLVPEHVKEILAEYAE 161


>gi|104782524|ref|YP_609022.1| NADH dehydrogenase subunit E [Pseudomonas entomophila L48]
 gi|95111511|emb|CAK16231.1| NADH dehydrogenase I chain E [Pseudomonas entomophila L48]
          Length = 165

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  +  +L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGEVLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVTKLLEGY 164


>gi|9719441|gb|AAF97801.1|AF281148_5 NADH dehydrogenase I subunit E [Pseudomonas fluorescens]
          Length = 166

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           +  +    F  SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  I
Sbjct: 4   QHAYPDRPFRLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGALYAIGEI 61

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+Q    PVG R  ++VC +  C + G E ++   +NK+       
Sbjct: 62  LGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVGEIQNKLGIGLGQT 120

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +DG  +   V C G C  AP +MI  DT+ D+ P+ + ++++ +
Sbjct: 121 TADGRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEGY 165


>gi|258516626|ref|YP_003192848.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780331|gb|ACV64225.1| NADH-quinone oxidoreductase, E subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 163

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E++ ++   +   A+IP+L  AQ+  G++ +  ++ ++  L + + ++  ++TFY
Sbjct: 16  QQALQELLQKFKGYK--GAIIPVLQGAQDIYGYLPKEVMQQISKDLRVPFSKIYGVSTFY 73

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF L P G R  V+VC  T C +RG +K+ E     +         D   + E V C G
Sbjct: 74  AQFHLKPRG-RNIVRVCQGTACHVRGGKKIFEAVEKVLGISEGGTTEDLRFTLETVACLG 132

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP++MI  DT+  L P  ++ I++ +
Sbjct: 133 ACGLAPVLMINDDTHGRLVPGDIQGILEQY 162


>gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM
           43247]
 gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM
           43247]
          Length = 706

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 10/194 (5%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP SR  SA++PLL   Q ++G+++RA I   A  LD+   +V  +ATFY+ ++ +P G
Sbjct: 55  RYPQSR--SALLPLLHLVQSEDGFITRAGILFCAAQLDLTAAQVASVATFYSMYRRNPTG 112

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + VC  T C   G + ++      +   P    +D  ++ E VEC  AC  AP+VM
Sbjct: 113 E-YLIGVCTNTLCATLGGDDILGSVCEHLGIDPGDTTADSRITVEHVECNAACDFAPVVM 171

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------QIDRISSAPAGGLTSLLDNN 204
           +  + +++ TP+   E+++    G       G        Q  R  +    G TS L   
Sbjct: 172 VNWEFFDNQTPDTAIELVEDLRAGVPTEPSRGTGSLCSFRQTARTLAGLPEGPTSPLTLP 231

Query: 205 SKKRGKKKKDDKIS 218
             +    + +++ S
Sbjct: 232 EVRGAVLRSEERAS 245


>gi|323702551|ref|ZP_08114214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532525|gb|EGB22401.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 161

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +++    + E++++Y       A+IP+L +AQE  G++    I+ +A  L +   RV  +
Sbjct: 10  NQDKQKSLAELLTKYKE--QPGALIPVLQQAQEIFGYLGPEVIDQIAGELKIPPARVYGV 67

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY QF L P G R  ++VC  T C +RG  K++E  + +   +P   + D   + E V
Sbjct: 68  ATFYAQFHLQPRG-RHVIKVCQGTACHVRGGAKVLEAIKKQTGLEPGETSKDLRYTLETV 126

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C GAC  AP++M+ +DT   L+PE+  + I  
Sbjct: 127 ACLGACGLAPVMMVNEDTQGQLSPEKAVKKIAQ 159


>gi|167836053|ref|ZP_02462936.1| NADH dehydrogenase subunit E [Burkholderia thailandensis MSMB43]
          Length = 161

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++  I++YP  + QSAV+  L  AQE+ GW+S   ++ VA+ L M  I V E+
Sbjct: 3   SAEGLKEIDRAIAKYPADQKQSAVMSALAVAQEEHGWLSPELMQFVADYLGMPAIAVQEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCML---RGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFYT ++L+PVG +  + +C   PC L    G E      + K+         DG  + 
Sbjct: 63  ATFYTMYELAPVG-KHKITLCTNLPCQLGPHGGAEATAAYLKQKLGIDFGETTPDGKFTL 121

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC +AP++++        ++ E+++++++  S 
Sbjct: 122 KEGECFGACGDAPVLLLNNHKMCSLMSREKIDQLLEELSK 161


>gi|261400473|ref|ZP_05986598.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
 gi|269209732|gb|EEZ76187.1| NADH dehydrogenase, E subunit [Neisseria lactamica ATCC 23970]
          Length = 157

 Score =  200 bits (510), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|258513532|ref|YP_003189754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777237|gb|ACV61131.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 165

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             S E    V+++I   P S     +I +L R QE  G++ R     VA  L++    V 
Sbjct: 10  QLSAELLSQVDKIIE--PSSGRSGNLIQVLHRVQELVGYLPREVQVRVAEGLNVPLSIVY 67

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ F + P G +  + VC  T C +RG ++LI   ++++  K     SDG  S  
Sbjct: 68  GVVSFYSFFNVLPKG-KHTINVCTGTACYVRGAKQLINNIQDQLDIKTGGTTSDGQFSLG 126

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            V C GAC   P+V I +D +  + PE+++ I+  +S 
Sbjct: 127 MVRCVGACGLGPVVTINEDVHAQVRPEKIDGILAKYSK 164


>gi|66046429|ref|YP_236270.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257136|gb|AAY38232.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|330954560|gb|EGH54820.1| NADH dehydrogenase subunit E [Pseudomonas syringae Cit 7]
 gi|330972910|gb|EGH72976.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 165

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +N +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKNSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|28870532|ref|NP_793151.1| NADH dehydrogenase I, subunit E [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970032|ref|ZP_03398164.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381387|ref|ZP_07229805.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062158|ref|ZP_07253699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato K40]
 gi|302130468|ref|ZP_07256458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28853780|gb|AAO56846.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925136|gb|EEB58699.1| NADH dehydrogenase I, E subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875770|gb|EGH09919.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965588|gb|EGH65848.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017274|gb|EGH97330.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 165

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F  SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFVLSETERSAIEHELHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +  +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPATVAKMLEGY 164


>gi|163855991|ref|YP_001630289.1| NADH dehydrogenase subunit E [Bordetella petrii DSM 12804]
 gi|163259719|emb|CAP42020.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           petrii]
          Length = 167

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQ+++GW+S   +E VAN + +  I V
Sbjct: 1   MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQDEKGWLSPEVLEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVG +  + VC   PC LR  EK  +  + K+         DG  + 
Sbjct: 61  QEVATFYNMFDVKPVG-KHKIAVCTNLPCALRDGEKAGDYLKRKLGIDYRETTPDGLFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174
            E EC GAC ++P++++        +T E+L+ ++     
Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVQGLKE 159


>gi|70731259|ref|YP_261000.1| NADH dehydrogenase subunit E [Pseudomonas fluorescens Pf-5]
 gi|68345558|gb|AAY93164.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 165

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   A+  +  IL +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAVYAIGEILGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   ++++        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYIGGHESVVSQIQSELGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP +MI  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPALMIDDDTFGDVQPAGVAKLLEGY 164


>gi|149927545|ref|ZP_01915799.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
 gi|149823818|gb|EDM83044.1| NADH dehydrogenase subunit E [Limnobacter sp. MED105]
          Length = 159

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE +   +++ +++YP  +  SAV+  L  AQ + GW+   AIE VA  L++  I  
Sbjct: 1   MKLSENAYRLIDKELTKYPADQKISAVMAALRIAQVELGWLPSEAIEAVAEYLEIQPIAA 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  +    VG ++ + VC   PC L G     E  + K+         DG  + 
Sbjct: 61  YEVATFYNMYDTKKVG-KSKIVVCTNLPCALSGGTDAAEYLKKKLGIDYNETTKDGLFTL 119

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           +E EC GAC ++P++++        ++ E+++ +++   +
Sbjct: 120 KEGECMGACGDSPVMLVNNHRMCSFMSNEKIDALVEELKS 159


>gi|134103326|ref|YP_001108987.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915949|emb|CAM06062.1| putative NADH dehydrogenase chain E [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 241

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
              +S  F E+      ++I RYP SR  SA++P+L   Q  +G VS   IE  A  LD+
Sbjct: 1   MSNTSAVFGEDVRADAKQIIGRYPESR--SALLPMLHLVQSVQGHVSTEGIEFCAEQLDL 58

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--- 127
           +   V  +ATFYT ++  P G    V VC  T C   G + +       +          
Sbjct: 59  STAEVSAVATFYTMYKRKPCGQ-HLVSVCTNTLCAALGGDSIYRTLSEHLGVGHDETAGT 117

Query: 128 -NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG-PQ 185
              +G+L+ E  EC  AC   P++ +  + Y++ TPE+  E++ A   G+      G P 
Sbjct: 118 PGEEGSLTLEHAECLAACDLGPVLQVNYEYYDNQTPEKALELVKALQRGEKPAPTRGAPL 177

Query: 186 IDRISSA 192
            D   + 
Sbjct: 178 SDFRGAE 184


>gi|15676169|ref|NP_273301.1| NADH dehydrogenase subunit E [Neisseria meningitidis MC58]
 gi|7225467|gb|AAF40699.1| NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58]
 gi|316985173|gb|EFV64125.1| NADH-quinone oxidoreductase, E subunit [Neisseria meningitidis
           H44/76]
 gi|325141081|gb|EGC63584.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           CU385]
 gi|325199448|gb|ADY94903.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           H44/76]
          Length = 157

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|86359330|ref|YP_471222.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
 gi|86283432|gb|ABC92495.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli CFN
           42]
          Length = 172

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 2   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 60  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKKGETTPDRLFTLSTVECLG 118

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           AC  AP++ +G D + DL   R++ ++D   T
Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLDRLRT 150


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 5/175 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    ++EVI RY  S     +I LL +AQE  G++  A    +A  +D+    V  + +
Sbjct: 15  EKMRLLDEVIDRYKDS--PGQLIRLLHKAQEIFGYLPEAVQCHIAERMDLPVSEVAGVVS 72

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+ F   P G +  V VC  T C ++G  +++   + ++        +DG  +  +  C
Sbjct: 73  FYSLFSRQPKG-KHTVSVCMGTACYVKGAPEVLTAIKKELSIDLGQTTADGMFTLTDTRC 131

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
            GAC  AP ++I  + +  +    +  ++D +   + +     P     +S  +G
Sbjct: 132 VGACGLAPAIVIDGEVHGRMKAADVPALLDGYRNRKDEQNV--PTAAEKASEESG 184



 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + +C  T C      +L     +++         D         C G C   P+V+I 
Sbjct: 309 HQILLCAGTGCTSSRSAELRRALHSELT----RCGLDKEAHVVPTGCFGFCELGPVVVIH 364

Query: 154 KD--TYEDLTPERLEEIIDAFST 174
            +   Y  + P+  +EI++    
Sbjct: 365 PERIFYCQVAPDDAKEIVERHIA 387


>gi|33592011|ref|NP_879655.1| NADH dehydrogenase subunit E [Bordetella pertussis Tohama I]
 gi|33602812|ref|NP_890372.1| NADH dehydrogenase subunit E [Bordetella bronchiseptica RB50]
 gi|33571655|emb|CAE41148.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33577254|emb|CAE35811.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381427|gb|AEE66274.1| NADH dehydrogenase subunit E [Bordetella pertussis CS]
          Length = 164

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GW+    +E VAN + +  I V
Sbjct: 1   MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVGT   + VC   PC LR  EK  +  + K+        +DG  + 
Sbjct: 61  QEVATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174
            E EC GAC ++P++++        +T E+L+ ++D   +
Sbjct: 120 IEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKS 159


>gi|150007690|ref|YP_001302433.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013605|ref|ZP_05285731.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|256839951|ref|ZP_05545460.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
 gi|262381801|ref|ZP_06074939.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|298375636|ref|ZP_06985593.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
 gi|301310273|ref|ZP_07216212.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
 gi|149936114|gb|ABR42811.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|256738881|gb|EEU52206.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
 gi|262296978|gb|EEY84908.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|298268136|gb|EFI09792.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_19]
 gi|300831847|gb|EFK62478.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 20_3]
          Length = 162

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++ + +    +     +I +L  AQ   G++     +V+A  L++   RV  + TFY+
Sbjct: 12  AELHAICA--ERNNDPGELINILHAAQGLFGYLPPEVQQVIAAELNIPVSRVYGVVTFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F ++P G +  + VC  T C +RG E ++E  + ++  K      DG  S + + C GA
Sbjct: 70  FFTMTPKG-KYPISVCLGTACYVRGAENVLEEMQRQLEIKVGETTPDGLFSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP+VMIG   Y  +TPE++ +I+  +
Sbjct: 129 CGLAPVVMIGGKVYGRVTPEKVRDILSDY 157


>gi|146295663|ref|YP_001179434.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409239|gb|ABP66243.1| NADH dehydrogenase subunit E [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 174

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S+F   +     ++ V+  Y   +  S +I +L + QE   ++   A+  ++    +   
Sbjct: 12  SNFKNQKVDLSLLDPVLDEYKGEK--SNIIAILQKTQEIYRFLPLDALNYISEKTGVKKA 69

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           ++  IATFY QF+L PVG +  +  C  T C + G E++     ++++ KP     DG  
Sbjct: 70  KIYGIATFYAQFRLKPVG-KYVILQCQGTACHVNGSEEIKNALCDELNIKPGDTTEDGMF 128

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           + EEV C G C  AP++MI  +TY  LTP++  EII
Sbjct: 129 TLEEVACLGCCSLAPVMMINGETYGKLTPDKAREII 164


>gi|222100043|ref|YP_002534611.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
 gi|221572433|gb|ACM23245.1| Fe-hydrogenase, subunit gamma [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     V E++ ++     +  +I +L+  QE   ++    I  V+  + +   ++  +A
Sbjct: 5   ERRFERVEEILRKH--GYKRENLIKILLEIQELYRYLPEDVINYVSTAMGIPPAKIYGVA 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G +  + VC  T C + G  ++++    +    P +   D   S ++V 
Sbjct: 63  TFYAQFSLKPKG-KYAIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVG 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP+++I  + Y +LT E+++EI+      + ++
Sbjct: 122 CLGACALAPVMVINDEVYGNLTAEKVKEILRKIKEKERES 161


>gi|190893217|ref|YP_001979759.1| NADH-ubiquinone oxidoreductase, chain E [Rhizobium etli CIAT 652]
 gi|190698496|gb|ACE92581.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           CIAT 652]
          Length = 167

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 2   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 59

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 60  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 118

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           AC  AP++ +G D + DL   R++ ++    T  G 
Sbjct: 119 ACEMAPVMQVGDDYHGDLDIARIDALLARLRTEAGQ 154


>gi|289522360|ref|ZP_06439214.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289504196|gb|EFD25360.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 166

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    +  +I  +     +   I LL + QE  G++ +  +  VA  LD+    +  +A
Sbjct: 6   QDDEQALQNIIETF--RGKKGITISLLSKIQESYGYLPQEVLSRVAKELDIPEASLYGVA 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+  P+G +  +++C  T C ++G   + +     +         DG  + E V 
Sbjct: 64  TFYAMFRFKPLG-KYTIKLCRGTACHVQGSLLIAQEVMRHLGISEGETTDDGLFTLELVA 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C G C  AP++M+G+D Y  LTP+R  +++D++ T +
Sbjct: 123 CLGCCSLAPVMMVGEDVYGRLTPDRAVKVLDSYRTNK 159


>gi|225572063|ref|ZP_03780927.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040498|gb|EEG50744.1| hypothetical protein RUMHYD_00357 [Blautia hydrogenotrophica DSM
           10507]
          Length = 172

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S+ +   +  V+ +Y  ++   ++I +L + Q+  G++S  AI  ++    +   ++  +
Sbjct: 13  SDGNFAELAPVLEKY--AKVPGSLITILQKTQDIYGYLSMDAINYISERTGIMPAKIYGV 70

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY QF+L P+G +  + +C  T C + G + + E     +  +      DG  +   V
Sbjct: 71  ATFYAQFRLQPIG-KYLIMLCKGTACHVNGADMIQEAVSEHLGIQDGETTEDGLFTLNAV 129

Query: 139 ECQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFST 174
            C G C  AP++M+    G++T+ +LT   + +I+D +  
Sbjct: 130 ACLGCCSLAPVMMVKTVDGEETFGNLTKSSVTKILDDYKA 169


>gi|290475914|ref|YP_003468809.1| NADH dehydrogenase I subunit E [Xenorhabdus bovienii SS-2004]
 gi|289175242|emb|CBJ82045.1| NADH dehydrogenase I chain E [Xenorhabdus bovienii SS-2004]
          Length = 181

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           +F  S      + +    Y   R  +A I  L   Q+Q GWV   AI  VA +L +    
Sbjct: 26  AFVLSTAERDAIEQEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAVAEVLGIPASD 83

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++ +P     DG  +
Sbjct: 84  VEGVATFYSQIYRQPVG-RHIIRYCDSVVCHITGYQDVQAAIEMHLNIRPGQTTEDGRFT 142

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +MI +DT+  + PE +E++++ +
Sbjct: 143 LLPTCCLGNCDKGPTMMIDEDTHSYVKPEEIEKLLEQY 180


>gi|297544310|ref|YP_003676612.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842085|gb|ADH60601.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 160

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F EE      + +          ++I ++  AQE  G++       ++  +++    + 
Sbjct: 7   KFGEEKVERFKKALEELKN--IPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + +C  T C +RG   ++E  + K+  +      DG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ ++EI+  F
Sbjct: 124 PTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKF 159


>gi|225164243|ref|ZP_03726516.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
 gi|224801148|gb|EEG19471.1| NADH-quinone oxidoreductase, E subunit [Opitutaceae bacterium TAV2]
          Length = 163

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +   E+   ++EVI+ YP  R  SA +PLL   QE  G++S  A+E +A+ L +  I V
Sbjct: 1   MNLKPETLQRIDEVITHYPVKR--SATLPLLHLIQEDAGYISDEAMEWIADKLGIERIHV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           LE+ TFY  F+  P+G R  ++VC T  C L G  K+ E  + +        + DG ++ 
Sbjct: 59  LEVVTFYPMFRRKPIGRRH-IKVCRTLSCALMGGYKVCETMQKEFDTHLNEVSPDGEVTV 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
           E VEC  +C  AP+VMI +  +E++TP R  E+
Sbjct: 118 EFVECLASCGTAPVVMIDETLHENVTPARAREL 150


>gi|168184521|ref|ZP_02619185.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795253|ref|YP_002862805.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672342|gb|EDT84303.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229261562|gb|ACQ52595.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum Ba4
           str. 657]
          Length = 159

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 28  EVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + + +Y    S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+ F
Sbjct: 12  KELEKYINNISNKKGSLIEVLHKAQHIFGYLPNDVQEFVAKKLDIPVSKVYGVITFYSYF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G    + VC  T C ++G   ++     K++ K      DG  + + + C GAC 
Sbjct: 72  TTEPKGE-NVINVCMGTACFVKGAGDILSEFEKKLNIKVGETTKDGKFTLQVLRCVGACG 130

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            AP+V I    Y   T   ++++++ +  
Sbjct: 131 LAPVVTINDKVYGHFTKNEVDKVLEEYGA 159


>gi|237800541|ref|ZP_04589002.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023401|gb|EGI03458.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 165

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  +  +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKTSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + E+++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAEMLEGY 164


>gi|304316575|ref|YP_003851720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778077|gb|ADL68636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 160

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F EE      +VI          ++I ++  AQE  G++     + ++  +++    + 
Sbjct: 7   KFDEEKVNKFKKVIDELKN--VDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIF 64

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY++F L P G +  + +C  T C ++G   +++  + K+        SDG  S E
Sbjct: 65  GIATFYSRFTLKPSG-KYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLE 123

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP+ +++I+  F
Sbjct: 124 ATRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKF 159


>gi|187779550|ref|ZP_02996023.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
           15579]
 gi|187773175|gb|EDU36977.1| hypothetical protein CLOSPO_03146 [Clostridium sporogenes ATCC
           15579]
          Length = 159

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E I+    S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+
Sbjct: 12  KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G    + VC  T C ++G   ++     K++ K      DG  + + + C GA
Sbjct: 70  YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+V I    Y   T   ++++++ +  
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159


>gi|168180427|ref|ZP_02615091.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|170756016|ref|YP_001781397.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|170758313|ref|YP_001787174.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169121228|gb|ACA45064.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B1
           str. Okra]
 gi|169405302|gb|ACA53713.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A3
           str. Loch Maree]
 gi|182668883|gb|EDT80861.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
          Length = 159

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E I+    S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+
Sbjct: 12  KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G    + VC  T C ++G   ++     K++ K      DG  + + + C GA
Sbjct: 70  YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+V I    Y   T   ++++++ +  
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159


>gi|254874053|ref|ZP_05246763.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254840052|gb|EET18488.1| nuoE, NADH dehydrogenase I E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 156

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEI 78
           +++   ++ V+S++P  + +SA++  L   Q+Q G +++      +A  L ++ + V E+
Sbjct: 3   KDTLYHIDRVLSKFPADQRRSAILEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY  + L PVG R  + VC    CML G  +++     K+  KP     DG ++ +EV
Sbjct: 63  ATFYCMYNLKPVG-RHKLNVCTNVSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           ECQGAC  +PM+ + K  YE+LT E++ +IID+ 
Sbjct: 122 ECQGACCGSPMLEVDKVFYENLTIEKVNQIIDSL 155


>gi|71733608|ref|YP_275282.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257485442|ref|ZP_05639483.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625429|ref|ZP_06458383.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649288|ref|ZP_06480631.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679199|ref|ZP_06500089.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487551|ref|ZP_07005593.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185026|ref|ZP_07261699.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. syringae
           642]
 gi|71554161|gb|AAZ33372.1| NADH-quinone oxidoreductase, E subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157935|gb|EFH99013.1| NADH-ubiquinone oxidoreductase chain E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323791|gb|EFW79875.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327930|gb|EFW83935.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866835|gb|EGH01544.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330881186|gb|EGH15335.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889657|gb|EGH22318.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. mori str.
           301020]
 gi|330900628|gb|EGH32047.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330987945|gb|EGH86048.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010724|gb|EGH90780.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 165

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|145589230|ref|YP_001155827.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047636|gb|ABP34263.1| NADH dehydrogenase subunit E [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 168

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++   S+++   ++  I++YP    QSAV+  L+ AQ + GWVS   IE VA IL+M  I
Sbjct: 3   TTLQLSDKTLADIHRNIAKYPAEHKQSAVMACLIAAQTEVGWVSPEVIEAVAQILEMPTI 62

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  +   P+G +  + +C   PC L   E      +  +          GT 
Sbjct: 63  AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGETAATYLKETLGIGFNETTPCGTF 121

Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTG 175
           + +E EC GAC ++P++++        ++ E+++ ++     G
Sbjct: 122 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLSELRAG 164


>gi|269218341|ref|ZP_06162195.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212200|gb|EEZ78540.1| NADH dehydrogenase I, E subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 223

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           +E + P      E       E+++RYP +R  SA++P+L   Q  +G+VS   I + A++
Sbjct: 2   KEGYPP---EVEERLRADSREIVARYPVAR--SALMPMLHLVQSVDGFVSPRGIALCADV 56

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+Q++  P G   +V VC    C + G +++ E   + +       
Sbjct: 57  LGLTRAEVSAVATFYSQYRRHPNGE-YNVGVCTNALCAVMGGDEIWEALTSALGVGSDET 115

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
             DG ++ E +EC   C  AP+VM+  + +++ TP    +I++    G+      G
Sbjct: 116 TPDGKITLEALECNAGCDYAPVVMVNWEFFDNQTPTSALQIVEDIRAGRDLHPTRG 171


>gi|327191025|gb|EGE58079.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           CNPAF512]
          Length = 169

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           AC  AP++ +G D +  L   R++ ++D   T  G 
Sbjct: 121 ACEMAPVMQVGDDYHGGLDIARIDALLDRLRTEAGQ 156


>gi|317165128|gb|ADV08669.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 157

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 SECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|229821705|ref|YP_002883231.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
           12333]
 gi|229567618|gb|ACQ81469.1| NADH-quinone oxidoreductase, E subunit [Beutenbergia cavernae DSM
           12333]
          Length = 283

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 21/210 (10%)

Query: 21  ESAIWVNE--VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           E  +  +   ++ RYP  R  SA++PLL   Q ++ +VS A I + A++L +    V  +
Sbjct: 13  EERLRADAAVILERYPEQR--SALLPLLHLVQAEDSYVSPAGIALCADLLGLTNAEVSAV 70

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYTQ++  P G R  V VC  T C + G +++ +    ++         DG ++ E +
Sbjct: 71  ATFYTQYKRRPNG-RYTVGVCTNTLCAVMGGDEIFDRVSERLGVGHDETTQDGAITLERI 129

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP-------------- 184
           EC  AC  AP++M+  + +++ TP    ++++A +  Q  T   G               
Sbjct: 130 ECNAACDYAPVLMVNWEFFDNQTPTSAVDLVEALAADQPVTPTRGAAQVQDFRATSRVLA 189

Query: 185 --QIDRISSAPAGGLTSLLDNNSKKRGKKK 212
             +  R    P  G  SL+     +     
Sbjct: 190 GFEDGRADEGPGAGEASLVGLRIAREHGWS 219


>gi|219847962|ref|YP_002462395.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aggregans DSM
           9485]
 gi|219542221|gb|ACL23959.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aggregans DSM
           9485]
          Length = 230

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  E     +  +I+RY   R  SAV+PLL  AQ+  G+++  AI  VA IL++    V
Sbjct: 1   MTLRETHQTEIESIIARYAGKR--SAVLPLLYLAQDTYGYLTDDAIREVAAILELPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+  FYT F   PVGT   +QVC   PC   G E+LI   +  +         DG  + 
Sbjct: 59  YEVVGFYTLFYDRPVGTW-VLQVCDDVPCCYCGAEELIAALKQTLGINEEETTPDGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           + V+C  AC  AP++    +   D+TPER++ ++        +  + G    R +
Sbjct: 118 QRVKCLAACDRAPVLQANLNYVYDVTPERVQTLLADLRARAAEARKQG-VSGRFA 171


>gi|255067285|ref|ZP_05319140.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
 gi|255048436|gb|EET43900.1| NADH dehydrogenase, E subunit [Neisseria sicca ATCC 29256]
          Length = 157

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  + +YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAESLKQIDIELVKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMDTGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|218767065|ref|YP_002341577.1| NADH dehydrogenase subunit E [Neisseria meningitidis Z2491]
 gi|121051073|emb|CAM07343.1| NADH dehydrogenase I chain E [Neisseria meningitidis Z2491]
 gi|325137072|gb|EGC59668.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M0579]
 gi|325202926|gb|ADY98380.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           M01-240149]
 gi|325207276|gb|ADZ02728.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 157

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGISYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156


>gi|292492185|ref|YP_003527624.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
 gi|291580780|gb|ADE15237.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus halophilus
           Nc4]
          Length = 155

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              S+E    +     +YP  + Q+A +  L   Q + GWVS   +  VA IL M+   +
Sbjct: 1   MMLSDEERKEIETEFKQYP--QKQAASVEALKIVQRRHGWVSDPHLREVAQILGMSAEEL 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY      PVG R  + +C +  C + G ++L +  +N++       + DG  + 
Sbjct: 59  DGVATFYNLIFRRPVG-RHAILLCNSVSCWIMGYDRLYQHLQNRLGIGLGETSKDGRFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               C G C +AP++M+ +D + DL PE+++EI+  + 
Sbjct: 118 LPTCCLGDCNHAPVMMVDEDLHRDLAPEKVDEILGRYQ 155


>gi|71906592|ref|YP_284179.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
 gi|71846213|gb|AAZ45709.1| NADH dehydrogenase subunit E [Dechloromonas aromatica RCB]
          Length = 157

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E+       +++YP  + QSA +  L  AQE++GW++  +IE VAN L M  I   E
Sbjct: 2   FSAETLQKFAREVAKYPADQKQSASMACLAHAQEEKGWLAPESIEAVANYLGMPPIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + L PVG +  + VC   PC L G     E  ++K+         DG  + +E
Sbjct: 62  VASFYNMYDLKPVG-KYKITVCTNLPCALSGGYHAGEYLQHKLGVGYGETTPDGKFTLKE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
            EC GAC +AP+ ++        + PE+++++++   
Sbjct: 121 GECMGACGDAPVFIVNNRSMCSHMHPEQIDKLLEECK 157


>gi|284992921|ref|YP_003411475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
           obscurus DSM 43160]
 gi|284066166|gb|ADB77104.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geodermatophilus
           obscurus DSM 43160]
          Length = 341

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E+  +   E+I+RYP  R  SA++P+L   Q  +G+V+   + + A  L +    V  
Sbjct: 31  LTEQVRLEAREIIARYPQPR--SALLPMLHLVQSHQGYVTPEGVALCAEELGLTKAEVGA 88

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFYT ++  P G R  V VC  T C + G +++ +     +        +DG+++ E 
Sbjct: 89  VATFYTMYKRRPTG-RHLVSVCTNTLCAVLGGQRIFDALSRDLGVHHDETAADGSVTLEH 147

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            EC  AC  AP+V +  + Y+    +   E++ A   G+      G
Sbjct: 148 AECLAACDYAPVVTVDYEFYDQQDVDSARELVAALRRGEKPHPTRG 193


>gi|156741305|ref|YP_001431434.1| NADH-quinone oxidoreductase subunit E [Roseiflexus castenholzii DSM
           13941]
 gi|156232633|gb|ABU57416.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 174

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S  E+    +  +I+RYP    +SAV+PLL  AQ++ G+++ AA+  VA +LDM    V
Sbjct: 1   MSLIEKYGAEIESIIARYP--HKRSAVLPLLFIAQDEYGYLTDAAMREVATLLDMPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FY+     PVG R  +QVC   PC   G E LI   + K+         DG  + 
Sbjct: 59  FEVAGFYSLLYEQPVG-RWVLQVCDDVPCAFCGAEDLIAALQAKLGIAVDQTTPDGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           + V+C   C +AP++    + Y DL TPE+++ ++      + ++        R +
Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVDAVLAELRR-RAESGEKLSISGRYA 172


>gi|300246021|gb|ADJ94068.1| putative anaerobic benzoate-degrading protein BamG [Clostridia
           bacterium enrichment culture clone BF]
          Length = 161

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           + A+ + +V + Y     + A+IP+L +AQE  G++    +  V+  L +   ++  + T
Sbjct: 12  KEALELEKVFAEY--RGKKGALIPVLQKAQEIYGYLPAEVLREVSRNLQIPVSKIFGVVT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY QF L P G R  V+VC  T C +RG  K+ E     I         D   ++E V C
Sbjct: 70  FYAQFHLHPRG-RNIVRVCLGTACHVRGGAKISEAVTKAIGIIDGETTEDLRYTFESVAC 128

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            GAC  AP++M+  +T+  LTP+ ++ +++ + 
Sbjct: 129 LGACGLAPVMMVNDETHGRLTPDMVKGLLEQYK 161


>gi|255994341|ref|ZP_05427476.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
 gi|255993054|gb|EEU03143.1| NADH dehydrogenase I, E subunit [Eubacterium saphenum ATCC 49989]
          Length = 163

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++ ++S Y     + ++I +L + Q+  G++    I+ ++    +   ++  +A
Sbjct: 6   KKDFSKIDNILSEYAD--KEGSLITILQKTQDAYGYLPMDVIDYISEKTGIRAAKIYGVA 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF+L P+G +  + +C  T C + G + + EV    ++ K      DG  +   V 
Sbjct: 64  TFYSQFRLKPIG-KYLIMLCQGTACHVNGSDSVREVVSEHLNIKDGETTEDGVFTLNNVA 122

Query: 140 CQGACVNAPMVMI----GKDTYEDLTPERLEEIIDAFST 174
           C G C  AP++M+    G++TY  LT +++ +++D    
Sbjct: 123 CLGCCSIAPVMMVQTVEGEETYGQLTKDKVIKLLDEIRA 161


>gi|304311498|ref|YP_003811096.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
 gi|301797231|emb|CBL45451.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
          Length = 167

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + +  + E    +   +  Y   R  +A I  L   Q + GWV   AI  +A IL +   
Sbjct: 11  APYEMAAEDRAEIEHSLHHYDDPR--AASIDALKVIQRRHGWVPNNAIREIALILQIPDS 68

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY +   SPVG R  + VC +  C L G E++    + ++  KP    SD   
Sbjct: 69  DVEGVATFYNRIYRSPVG-RHVITVCDSIGCFLTGFEEVYAALQQRLGIKPGQTTSDNRF 127

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     C GAC   P++MI  DTY +LT ++L+ +++ ++
Sbjct: 128 TLIPTCCLGACDRGPVLMINDDTYFNLTVDQLDALLEKYA 167


>gi|59802068|ref|YP_208780.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA 1090]
 gi|194099643|ref|YP_002002774.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|239999840|ref|ZP_04719764.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|240014999|ref|ZP_04721912.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI18]
 gi|240017447|ref|ZP_04723987.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA6140]
 gi|240081586|ref|ZP_04726129.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|240113868|ref|ZP_04728358.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae MS11]
 gi|240116599|ref|ZP_04730661.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID18]
 gi|240118823|ref|ZP_04732885.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID1]
 gi|240122068|ref|ZP_04735030.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID24-1]
 gi|240124362|ref|ZP_04737318.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae PID332]
 gi|240126574|ref|ZP_04739460.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-92-679]
 gi|240129039|ref|ZP_04741700.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae SK-93-1035]
 gi|254494623|ref|ZP_05107794.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|260439640|ref|ZP_05793456.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|268595650|ref|ZP_06129817.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268597682|ref|ZP_06131849.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268599934|ref|ZP_06134101.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268602268|ref|ZP_06136435.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268604534|ref|ZP_06138701.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268682989|ref|ZP_06149851.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268685154|ref|ZP_06152016.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268687417|ref|ZP_06154279.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291042881|ref|ZP_06568622.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|293398108|ref|ZP_06642313.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
 gi|59718963|gb|AAW90368.1| putative NADH dehydrogenase I chain E [Neisseria gonorrhoeae FA
           1090]
 gi|193934933|gb|ACF30757.1| ATP synthase subunit E [Neisseria gonorrhoeae NCCP11945]
 gi|226513663|gb|EEH63008.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268549039|gb|EEZ44457.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae 35/02]
 gi|268551470|gb|EEZ46489.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae FA19]
 gi|268584065|gb|EEZ48741.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268586399|gb|EEZ51075.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268588665|gb|EEZ53341.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268623273|gb|EEZ55673.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268625438|gb|EEZ57838.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268627701|gb|EEZ60101.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291013315|gb|EFE05281.1| NADH dehydrogenase subunit E [Neisseria gonorrhoeae DGI2]
 gi|291611371|gb|EFF40441.1| NADH dehydrogenase I subunit E [Neisseria gonorrhoeae F62]
          Length = 157

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + +   +  E
Sbjct: 2   LSAKSLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGITPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|121609758|ref|YP_997565.1| NADH-quinone oxidoreductase subunit E [Verminephrobacter eiseniae
           EF01-2]
 gi|121554398|gb|ABM58547.1| NADH-quinone oxidoreductase, E subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 165

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE +       +++YP  + QSAV+  L   Q+++G VS  +  +VA+ L MA I V E
Sbjct: 2   MSEATLARFAREVAKYPADQKQSAVMACLAIVQQEQGHVSADSQALVADYLGMAPIAVHE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG    + VC   PC LRG  + ++    K+         DG  + + 
Sbjct: 62  VATFYNMYNRQPVGQ-YKINVCTNLPCQLRGGRQALQHLERKLALASGGTTDDGLFTLQS 120

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGD 178
            EC GAC +AP++++   T    +  ++L++++D     + +
Sbjct: 121 CECLGACADAPVLLVNDRTMCSFMDGDKLDQLVDGLRQARQE 162


>gi|296140855|ref|YP_003648098.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
           DSM 20162]
 gi|296028989|gb|ADG79759.1| NADH-quinone oxidoreductase, E subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 237

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP  R  SA++PLL   Q Q+G+++ A IE  A  L++    V+ +ATFY+ ++  P G
Sbjct: 46  RYPEPR--SALLPLLHLVQSQDGYITPAGIEFCARTLELTAADVISVATFYSMYRRGPTG 103

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               V VC TT C + G + ++      +  +P     DG ++ E +EC  AC  AP+VM
Sbjct: 104 E-YLVGVCTTTLCAVLGGDAILSALCEHLGIEPGGTTDDGRVTVERIECNAACDYAPVVM 162

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +  + ++D T      ++D   TG       G
Sbjct: 163 VNWEFFDDQTVASARALVDGLRTGTAPLPTRG 194


>gi|83816470|ref|YP_444542.1| NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
           [Salinibacter ruber DSM 13855]
 gi|83757864|gb|ABC45977.1| NADH-ubiquinone oxidoreductase 24 kda subunit, putative
           [Salinibacter ruber DSM 13855]
          Length = 249

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 4/176 (2%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           +  +  F      +++E    +     +YP    Q+A++ +L  AQE+ G+++   I++ 
Sbjct: 40  QDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLC 97

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A+ LDM + +   +ATFY Q+     GT   + VC    C + G   ++     K+    
Sbjct: 98  ADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGVHA 156

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                DG  + +E EC G+C +APM+ I       +LTP+++++++++   G+  +
Sbjct: 157 GETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVPS 212


>gi|159899602|ref|YP_001545849.1| NADH-quinone oxidoreductase subunit E [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892641|gb|ABX05721.1| NADH-quinone oxidoreductase, E subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 174

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 2/171 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+    ++E+++RYP  R +SA++PLL  AQ+  G + R +I  VA ILD+ Y  V E+ 
Sbjct: 4   EQHKAEIDEILARYPVDRKRSALLPLLYLAQDVYGRLDRDSIREVAEILDLPYTDVFEVV 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FYT F    VG +  + VC   PC   G E+L+    N++  K      D   +   V+
Sbjct: 64  GFYTLFYNEEVG-KVVLDVCDDVPCCFCGAEELVADLENRLGIKAGETTKDKVFTLRRVK 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           C  AC  AP++    + +  + P+++E ++        ++ +P     R++
Sbjct: 123 CIAACDQAPVLQANLEFHNRVLPDKVEAMLAKLRN-DVESGKPVSISGRLA 172


>gi|164686660|ref|ZP_02210688.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
           16795]
 gi|164604050|gb|EDQ97515.1| hypothetical protein CLOBAR_00255 [Clostridium bartlettii DSM
           16795]
          Length = 191

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +E+I  +      S++IP++   Q +  ++    +  +A+ L +   +   +ATFY
Sbjct: 38  YEKTDEIIELHGA--KASSLIPVMQDVQAEYRYLPGELLSYIADKLGIPLAKAYSVATFY 95

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141
             F   P G +  ++VC  T C +R    + E     +          D   + E V C 
Sbjct: 96  ENFSFDPKG-KYVIKVCDGTACHVRKSVPVREALEKHLGLGKGKQTTDDMMFTIEIVSCL 154

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP++ +    +  +TP++  EIID    G+
Sbjct: 155 GACGLAPVMTVNDKVHPKMTPDKAVEIIDELKEGE 189


>gi|189426183|ref|YP_001953360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189422442|gb|ACD96840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 171

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
                 EVI +Y        ++P+L   Q+  G+V R  ++ VA  L++   ++  + TF
Sbjct: 19  DLALAEEVIQKYKD--IPGNLMPVLQGIQDAYGYVPRITVDYVAERLNVYPSQIYGVLTF 76

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L P G +  ++VC  T C + G E++ E   ++I         D   ++E V C 
Sbjct: 77  YAQFHLKPRG-KFIIRVCMGTACHVLGAERIKESFYDRIGIGHAETTPDRRFTFELVACL 135

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           GAC  AP+ M+  +TY  +T ++++EII  +S+
Sbjct: 136 GACGMAPLAMVNDETYGKMTVQKVDEIIKEYSS 168


>gi|298246354|ref|ZP_06970160.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553835|gb|EFH87700.1| NADH-quinone oxidoreductase, E subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 172

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           SE++   + E+  RYP +R  SAV+P L  AQE+EG+++RA +E VA  + M    V  +
Sbjct: 3   SEKAKERMRELAKRYPAAR--SAVMPSLYIAQEEEGYITRAGLEAVAEAVGMTIDDVESV 60

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYT +     G +  V+VC +  C LR C+ ++E    ++  K      DG  + + V
Sbjct: 61  ATFYTMYHKQAPGKK-IVKVCTSISCYLRNCDSVMEHLEQRLGIKRGETTPDGNFTLQGV 119

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
           EC   C  AP++ +     E++T E+ + +ID         ++ G Q++   S
Sbjct: 120 ECLATCGYAPVIQVNGQFVENVTLEKADALIDDLER----ELKQGKQVNESKS 168


>gi|148657774|ref|YP_001277979.1| NADH-quinone oxidoreductase subunit E [Roseiflexus sp. RS-1]
 gi|148569884|gb|ABQ92029.1| NADH-quinone oxidoreductase, E subunit [Roseiflexus sp. RS-1]
          Length = 174

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S  E+    +  +I+RYP     SAV+PLL  AQ++ G+++ AA+  VA +LDM    V
Sbjct: 1   MSLIEKHGAEIEAIIARYP--HKPSAVLPLLFIAQDEYGYLTEAAMREVAELLDMPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FY+     PVG +  +QVC   PC   G E LI   + K+         DG  + 
Sbjct: 59  FEVAGFYSLLYEQPVG-KWVLQVCDDVPCAFCGAEDLIATLQAKLGIGVDQTTPDGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           + V+C   C +AP++    + Y DL TPE++E+++      + ++        R +
Sbjct: 118 QRVKCLADCDHAPVLQANLEYYHDLTTPEKVEQVLAMLRQ-RAESGEQLSISGRYA 172


>gi|150375770|ref|YP_001312366.1| NADH-quinone oxidoreductase subunit E [Sinorhizobium medicae
           WSM419]
 gi|150030317|gb|ABR62433.1| NADH-quinone oxidoreductase, E subunit [Sinorhizobium medicae
           WSM419]
          Length = 169

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 3/154 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +    +RYP  R  SA++P LM AQ++ G +    +E VA IL +  + V E+ TFY
Sbjct: 4   REEIEAAAARYPDRR--SAIMPALMIAQKEHGHLPGPVLEDVAEILGVERVWVYELVTFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   P+G R H+Q+C    CML G E L++     +  K     +DG  +   VEC G
Sbjct: 62  TLFHTEPIG-RFHLQLCDNVSCMLCGSEALLKHLETTLRIKKGETTADGVFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           AC  AP++ +G D + +L   RLE ++++F   +
Sbjct: 121 ACEMAPVMQVGDDYHGNLDNARLEAMLESFRAAE 154


>gi|153807871|ref|ZP_01960539.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
 gi|149129480|gb|EDM20694.1| hypothetical protein BACCAC_02157 [Bacteroides caccae ATCC 43185]
          Length = 158

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  +  +  ++        +I +L  AQ  +G++      ++A+ L +   +V  + TFY
Sbjct: 11  AEQIKTICDKH--GNNPGELINILHEAQHLQGYLPEEIQRIIASKLGIPVSKVYGVVTFY 68

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C G
Sbjct: 69  TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP+VMIG+  Y  L P  +++II+  
Sbjct: 128 ACGLAPVVMIGEKVYGRLQPVDVKKIIEDL 157


>gi|15836912|ref|NP_297600.1| NADH dehydrogenase subunit E [Xylella fastidiosa 9a5c]
 gi|28198175|ref|NP_778489.1| NADH dehydrogenase subunit E [Xylella fastidiosa Temecula1]
 gi|71897770|ref|ZP_00679996.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|182680809|ref|YP_001828969.1| NADH dehydrogenase subunit E [Xylella fastidiosa M23]
 gi|9105132|gb|AAF83120.1|AE003884_5 NADH-ubiquinone oxidoreductase, NQO2 subunit [Xylella fastidiosa
           9a5c]
 gi|28056245|gb|AAO28138.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
           Temecula1]
 gi|71732325|gb|EAO34379.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Ann-1]
 gi|182630919|gb|ACB91695.1| NADH-quinone oxidoreductase, E subunit [Xylella fastidiosa M23]
 gi|307579277|gb|ADN63246.1| NADH dehydrogenase subunit E [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 175

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
             + +   ++  ++++P  + +SA++  L  AQEQ +GW++   I  VA  LD+  +   
Sbjct: 19  LGDRTRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVATFYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E++++++D  
Sbjct: 138 CEEECLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174


>gi|325130974|gb|EGC53701.1| NADH:ubiquinone dehydrogenase, E subunit [Neisseria meningitidis
           OX99.30304]
          Length = 157

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKKKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156


>gi|71275686|ref|ZP_00651971.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Dixon]
 gi|71897858|ref|ZP_00680084.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Xylella fastidiosa
           Ann-1]
 gi|170729493|ref|YP_001774926.1| NADH dehydrogenase subunit E [Xylella fastidiosa M12]
 gi|71163577|gb|EAO13294.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Dixon]
 gi|71732413|gb|EAO34467.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Xylella
           fastidiosa Ann-1]
 gi|167964286|gb|ACA11296.1| NADH-ubiquinone oxidoreductase NQO2 subunit [Xylella fastidiosa
           M12]
          Length = 175

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ-EGWVSRAAIEVVANILDMAYIRVL 76
             + +   ++  ++++P  + +SA++  L  AQEQ +GW++   I  VA  LD+  +   
Sbjct: 19  LGDRTRAHIDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAY 78

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F+   VG R +V  C    C L G E L+     K+  K     +DG +  +
Sbjct: 79  EVATFYSMFETRKVG-RHNVAFCTNVSCWLNGAEDLVSYAEEKLGCKLGQSTADGRVYLK 137

Query: 137 EVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             E C  AC  APM++I    +E LT E++++++D  
Sbjct: 138 CEEECLAACAGAPMMVINGHYHERLTKEKVDQLLDGL 174


>gi|33597907|ref|NP_885550.1| NADH dehydrogenase subunit E [Bordetella parapertussis 12822]
 gi|33574336|emb|CAE38672.1| respiratory-chain NADH dehydrogenase I, 24 kDa subunit [Bordetella
           parapertussis]
          Length = 164

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GW+    +E VAN + +  I V
Sbjct: 1   MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVGT   + VC   PC LR  EK  +  + K+        +DG  + 
Sbjct: 61  QEVATFYNMFDVKPVGT-HKIAVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174
            E EC GAC ++P++++        +T E+L+ ++D   +
Sbjct: 120 IEGECMGACGDSPVLILNNKHMCVRMTEEKLDALVDGLKS 159


>gi|154249677|ref|YP_001410502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153613|gb|ABS60845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 164

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    ++  I +         +I +L +AQE  GW+ +   E VA  L +    V  + 
Sbjct: 8   KELYEELDAYIDQVKD--KPGILIGVLHKAQELFGWLPQEVQEHVAERLGVPISEVYGVV 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  ++VC  T C ++G ++++E    ++  K      DG  S   V 
Sbjct: 66  TFYNFFATKPKG-KNQIKVCLGTACYVKGADRVMERFLEELGVKAEEVTEDGLFSVHPVR 124

Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP+V++G+ D Y  +TP+ + +II A+  G
Sbjct: 125 CLGACSMAPVVLVGEKDFYGKVTPDMVSKIIAAYRRG 161


>gi|260892083|ref|YP_003238180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864224|gb|ACX51330.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
          Length = 149

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               + EV+  Y        +I  L+  Q   G++   A+  +A  L +   +V  +ATF
Sbjct: 2   EEAILEEVVRIY--RGKPEKLIAALLALQRHYGYLPEPALRTLAQELGVPLSKVYGVATF 59

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF+L P G +  V VC  T C +RG E++    + ++  +P    +DG  + E V C 
Sbjct: 60  YAQFRLKPRG-KHTVCVCLGTACHVRGSEQIFHALKRELGVEPGDTTADGRFTLEVVSCV 118

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP+V++ ++T+  L PE+   ++  +
Sbjct: 119 GACSMAPVVVVDEETHGRLDPEKALALLKKY 149


>gi|114566200|ref|YP_753354.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337135|gb|ABI67983.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 182

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           +R  E+ F  +    S      V ++I        + ++I +L +AQ+  G++  + ++ 
Sbjct: 8   KRAEEKSFLDAQLDLSP-----VLKIIE--EKRHEKGSLIAILQQAQDIYGYLPLSVLKC 60

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           +A  L +   +V  IATFYTQF+L P G +  +  C  T C + G E++      ++  K
Sbjct: 61  IARELGIKPAKVYGIATFYTQFRLQPAG-KYQIMFCQGTACHVNGSERIESTLCQELKIK 119

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                 DG  S E   C G C  AP++MI    Y  L+ E+   II      +  ++  G
Sbjct: 120 RGETTPDGLFSLESAACLGCCSLAPVMMINGQAYGPLSAEKAIAIIRKIKAAESSSLVGG 179


>gi|328953056|ref|YP_004370390.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453380|gb|AEB09209.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 151

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               +N ++SRY      + +IP+L   Q+   ++ +  ++VVA  L++   R+  +ATF
Sbjct: 2   DLERLNGILSRY--DCQPADLIPVLQDIQDSYNYLPQDEMKVVAERLNIPLTRIFSVATF 59

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F L+P G +   +VC  T C L+G ++L E   +++     +   D   + E V C 
Sbjct: 60  YKMFSLTPKG-KHICRVCLGTTCHLKGGQRLAESISHRLGVDIGYTTKDMRFTLETVGCL 118

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G+C  AP++MI    +  +T +++ +I+  +  
Sbjct: 119 GSCAQAPVMMIDDTYHARVTVDKVPKILKKYQK 151


>gi|297538952|ref|YP_003674721.1| NADH-quinone oxidoreductase subunit E [Methylotenera sp. 301]
 gi|297258299|gb|ADI30144.1| NADH-quinone oxidoreductase, E subunit [Methylotenera sp. 301]
          Length = 157

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ++   ++  +++YP  + Q+AV+  L   Q + GW+S+ +I  VA  L M  I  +E
Sbjct: 2   LSPQATEKIDYELTKYPVDQRQAAVMSALRIVQTERGWLSKESITEVAQYLGMPEIAAME 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY  + LSPVG +  + +C    CMLR  ++++   + K+         DG    +E
Sbjct: 62  VASFYNMYDLSPVG-KYKITICTNISCMLRDSDEIVNHLKTKLGVGFNEVTPDGKFCLKE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
            EC G C  AP++ +   D +E LT E+++ II    
Sbjct: 121 GECMGCCGGAPLMHVNNTDMHEFLTVEKVDAIIGELK 157


>gi|320449686|ref|YP_004201782.1| NADH-quinone oxidoreductase subunit E [Thermus scotoductus SA-01]
 gi|320149855|gb|ADW21233.1| NADH-quinone oxidoreductase, subunit E [Thermus scotoductus SA-01]
          Length = 181

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   ++ E  ++YPP   +SA++PLL R Q++EGW+    IE +A ++      V
Sbjct: 1   MGFFDDKQDFLEETFAKYPPEGRRSAIMPLLRRVQQEEGWIRPERIEEIAQLVGTTATEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           + +A+FY+ +Q  P G R H+QVC T  C L G ++L +     +   P     DG  S 
Sbjct: 61  MGVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTETLGIGPGEVTPDGLFSV 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP+V +  + Y E +T  RLE +++    G+
Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLEALLEGLKAGK 161


>gi|171058189|ref|YP_001790538.1| NADH-quinone oxidoreductase subunit E [Leptothrix cholodnii SP-6]
 gi|170775634|gb|ACB33773.1| NADH-quinone oxidoreductase, E subunit [Leptothrix cholodnii SP-6]
          Length = 175

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS  +       +++YP  + QSAV+  L  AQ+  GWVS  A + +A+ L M  I V E
Sbjct: 13  FSAATLERFAREVAKYPADQKQSAVMACLSIAQQVNGWVSAEAEKQIADYLGMPAIAVHE 72

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  +   PVG    + VC   PC+LR  +  +E    K+  +     +DG  + ++
Sbjct: 73  VTTFYNMYNQQPVGQ-FKLNVCTNLPCLLRNGQAALEHLCQKLGVEDGGTTADGLFTVQK 131

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            EC GAC +AP++++        ++ ++L++++D    
Sbjct: 132 CECLGACADAPVMLVNDRQMISYMSHDKLDQLVDTLKA 169


>gi|92115244|ref|YP_575172.1| NADH-quinone oxidoreductase, E subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91798334|gb|ABE60473.1| NADH dehydrogenase subunit E [Chromohalobacter salexigens DSM 3043]
          Length = 171

 Score =  198 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
                   +F   +E    +      YP    Q+A I  L   Q + GWV  AAI+ +A 
Sbjct: 8   TATPIATDAFVLHDEDRAAIAHERDHYP--HPQAASIEALKIVQRRHGWVPDAAIDAIAR 65

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            L ++   V  +ATFY+     PVG R  + +C ++ C L   E L +     +      
Sbjct: 66  ELGVSPASVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTDYEALRDAFFEHLGIGFGQ 124

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              DG  +   V C GAC   P +MIG DT+  + PE +  +++A++
Sbjct: 125 TTPDGRFTLLPVCCLGACDRGPALMIGDDTHGPVAPEEIPTLLEAYA 171


>gi|20807371|ref|NP_622542.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515890|gb|AAM24146.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 169

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F ++      + I  Y       ++I ++  AQE  G++       ++  + +    + 
Sbjct: 16  KFGKDKVEKFKKSIENYRE--IPGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIF 73

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            I+TFY++F L P G +  + +C  T C +RG   L+E  + K+  +      DG  S E
Sbjct: 74  GISTFYSRFTLKPSG-KYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLE 132

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C GAC  AP++MI  + +  LTP  ++EI+  F
Sbjct: 133 PTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKF 168


>gi|148379809|ref|YP_001254350.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934211|ref|YP_001384107.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936196|ref|YP_001387647.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289293|emb|CAL83389.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930255|gb|ABS35755.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932110|gb|ABS37609.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum A
           str. Hall]
 gi|322806086|emb|CBZ03653.1| NAD-reducing hydrogenase subunit HoxE [Clostridium botulinum H04402
           065]
          Length = 159

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E I+    S  + ++I +L +AQ   G++     E VA  LD++  +V  + TFY+
Sbjct: 12  KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDISVSKVYGVITFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G    + VC  T C ++G   ++    NK++ K      DG  + + + C GA
Sbjct: 70  YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFENKLNIKVGETTKDGKFTLQVLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+V I    Y   T   ++++++ +  
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVDKVLEEYGA 159


>gi|256544553|ref|ZP_05471926.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Anaerococcus vaginalis ATCC 51170]
 gi|256399878|gb|EEU13482.1| NADH-quinone oxidoreductase subunit E (NADH dehydrogenase I subunit
           E) [Anaerococcus vaginalis ATCC 51170]
          Length = 177

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 16  FSFS-EESAIWVNEV---ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           F F  EE+   +NE    I +      +  ++P+L  AQ   G++    +E+++N L++ 
Sbjct: 19  FVFDKEENREKINEFKKFIEK--NKDRKGPLMPILQEAQSIFGYLPDEMMELISNKLNIP 76

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  +ATFY+QF   P G +  + +C  T C ++G   ++     ++  K      DG
Sbjct: 77  LAEVYGVATFYSQFTFVPKG-KTDIHICLGTACYVKGAADILNEFEQRLGIKKGETTPDG 135

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
             S  E  C G C  AP+V I  +  E  T + + ++++ 
Sbjct: 136 KFSISETRCLGNCGAAPVVEINGEQVEHFTKDDVSKVLEE 175


>gi|330981368|gb|EGH79471.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 165

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  + ++L +
Sbjct: 6   IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYAIGDLLGI 63

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +        +D
Sbjct: 64  PASDVEGVATFYSQIFPQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGIGLGQTTAD 122

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G  +   V C G C  AP VM+  DT+ D+ P  + ++++ +
Sbjct: 123 GRFTLLPVCCLGNCDKAPAVMVDDDTFGDVQPAGVAKMLEGY 164


>gi|153939211|ref|YP_001391109.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152935107|gb|ABS40605.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319155|gb|ADF99532.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 159

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E I+    S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+
Sbjct: 12  KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G    + VC  T C ++G   ++     K++ K      DG  + + + C GA
Sbjct: 70  YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+V I    Y   T   + ++++ +  
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVNKVLEEYGA 159


>gi|288572801|ref|ZP_06391158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568542|gb|EFC90099.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 163

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    ++ ++ RY     +   IPLL   Q++ G+V+  A+  V+  +D++   +  +
Sbjct: 9   SNELTQRLDPIVQRY--QGKKGITIPLLADIQKEYGYVAEEAVTYVSRKMDISASEMFGV 66

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY  F+L P G +  +++C  T C ++G   + E     +  +      DG  + + V
Sbjct: 67  ATFYAMFRLQPEG-KYVIRICRGTACHVQGSASVAEEVARHLGIEEGETTEDGIFTLQHV 125

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C G C  AP++M+G + +  LTP +  EI++ +  
Sbjct: 126 ACLGCCSLAPVMMVGDNVHGLLTPPKSIEILEDYRK 161


>gi|270297047|ref|ZP_06203246.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273034|gb|EFA18897.1| NADH-ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 158

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  +  ++        +I +L  AQ   G++      ++A  L +   RV  + TFYT
Sbjct: 12  KQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRIIAAQLGIPVSRVYGVVTFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F + P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C GA
Sbjct: 70  FFTMLPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP+VMIG+  Y  L P  +++I++  
Sbjct: 129 CGLAPVVMIGEKVYGRLQPIDVKKILEEL 157


>gi|294102541|ref|YP_003554399.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
           colombiense DSM 12261]
 gi|293617521|gb|ADE57675.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminobacterium
           colombiense DSM 12261]
          Length = 156

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 18  FSEESAIWVN---EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            S+     +    E+++  P    +  +IP+L  AQ + G++    +E ++  L +    
Sbjct: 1   MSQVELKKIQKTREIVA--PWKGKKGGLIPILQEAQHEFGYLPPEVMETISKELKIPKAE 58

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           +  +ATFY QF L P G R  ++VC  T C +RG  K++E  +            D   +
Sbjct: 59  IYGVATFYAQFHLKPRG-RHVIRVCRGTACHVRGSLKILEKVKELTGVSENETTDDLRFT 117

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E V C GAC  AP++M+   T+  L P+ +  ++  F
Sbjct: 118 IEPVACLGACGLAPVMMVDSQTFGRLAPDMVAGVLAKF 155


>gi|291530734|emb|CBK96319.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           70/3]
          Length = 143

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            Q A++P+L +AQE  G++      ++A  + +   +V  ++TFY+QF L P G +  + 
Sbjct: 8   QQGALMPVLQQAQEIYGYLPIEVQSIIAEEMGIPLEKVYGVSTFYSQFSLYPKG-KYKIS 66

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C ++G   +      K+         DG  S +   C GAC  AP++ +  D Y
Sbjct: 67  VCLGTACYVKGSGDIFAKLSEKLGISDGKCTQDGIFSLDACRCIGACGLAPVMTVNDDVY 126

Query: 158 EDLTPERLEEIIDAFST 174
             LT + ++ I+  ++ 
Sbjct: 127 GKLTVDEIDGILAKYTE 143


>gi|310828876|ref|YP_003961233.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
 gi|308740610|gb|ADO38270.1| NADH dehydrogenase I [Eubacterium limosum KIST612]
          Length = 172

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++ V+  Y       ++I +L +AQE  G++S   +  ++   D+   ++  +ATFY Q
Sbjct: 23  ELDAVLDAYAD--VAGSLITILQKAQETYGYLSPDLMLYISRETDIPVAKIYGVATFYAQ 80

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+++PVG +  + +C  T C + G   + E     +  K      DG  + E V C G C
Sbjct: 81  FRMNPVG-KHLIMLCQGTACHVNGSSMIEEAVVEHLGIKEGETTEDGLFTLENVACLGCC 139

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
             +P++MI  +TY  LT +++  I+      + 
Sbjct: 140 SLSPVMMIDGETYGQLTKDKVVNILTELKEQEA 172


>gi|150026259|ref|YP_001297085.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772800|emb|CAL44284.1| NADH dehydrogenase I, E subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 176

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVAN 66
           E+     + + +E     + E+ S YP  + +SA++P+L   Q+    W+S    + VA 
Sbjct: 2   EKTNIKQTINITEALMTRIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAE 61

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           IL +  + V E+ +FYT +   P+G +   + C T+PC L G E L++   +K+  K   
Sbjct: 62  ILHIKPVEVYEVVSFYTMYNRRPIG-KYMFEFCQTSPCCLNGTENLMDYTCDKLGVKVGE 120

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             +DG      VEC GAC  APM+ +G    E LT  +++++I      +
Sbjct: 121 PTADGLFEVRGVECLGACDYAPMMQLGDFYQEHLTEAKIDQLIADCKDNK 170


>gi|118602279|ref|YP_903494.1| NADH-quinone oxidoreductase, E subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567218|gb|ABL02023.1| NADH dehydrogenase subunit E [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 157

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +   ++  I++YP  R  SAV+  L   Q E E  +S   I+ VA+ LDM  I V E+AT
Sbjct: 6   AKKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVAT 65

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  +    VG +  ++ C    CML G + LI    NK+  +      DG +S ++VEC
Sbjct: 66  FYENYNHKKVG-KYVIRFCHNISCMLNGADDLIAYLENKLGVQTDEVTPDGLISVKKVEC 124

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            GACV APM  I  + +E+LT +++++I+D   
Sbjct: 125 LGACVGAPMFQINDEYFENLTFDKIDKIVDNLK 157


>gi|226949093|ref|YP_002804184.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226840738|gb|ACO83404.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 159

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E I+    S  + ++I +L +AQ   G++     E VA  LD+   +V  + TFY+
Sbjct: 12  KELEEYINN--ISNKKGSLIEVLHKAQHIFGYLPNEVQEFVAKKLDIPVSKVYGVITFYS 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G    + VC  T C ++G   ++     K++ K      DG  + + + C GA
Sbjct: 70  YFTTEPKGE-NVINVCMGTACFVKGAGDVLSEFEKKLNIKVGETTKDGKFTLQVLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP+V I    Y   T   + ++++ +  
Sbjct: 129 CGLAPVVTINDKVYGHFTKNEVAKVLEEYGA 159


>gi|160887579|ref|ZP_02068582.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
 gi|260171117|ref|ZP_05757529.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|156107990|gb|EDO09735.1| hypothetical protein BACOVA_05601 [Bacteroides ovatus ATCC 8483]
 gi|295087524|emb|CBK69047.1| NADH dehydrogenase subunit E [Bacteroides xylanisolvens XB1A]
          Length = 162

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           + A  +  +  ++        +I +L  AQ  +G++      ++A+ L +   +V  + T
Sbjct: 13  DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C
Sbjct: 71  FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP+VMIG+  Y  L P  +++II+  
Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161


>gi|330503268|ref|YP_004380137.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
 gi|328917554|gb|AEB58385.1| NADH dehydrogenase subunit E [Pseudomonas mendocina NK-01]
          Length = 164

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q+Q GWV   A + +  IL +
Sbjct: 5   IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKQRGWVPDGAADAIGEILGI 62

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++   + ++        SD
Sbjct: 63  PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVVSEMQKQLGIGLGQTTSD 121

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              +   V C G C  AP +MI  DT+ D+ P+ + ++++ + 
Sbjct: 122 ERFTLLPVCCLGNCDKAPALMIDDDTFGDVQPDGVAKLLEDYK 164


>gi|294506288|ref|YP_003570346.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
           M8]
 gi|294342616|emb|CBH23394.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Salinibacter ruber
           M8]
          Length = 225

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 4/176 (2%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           +  +  F      +++E    +     +YP    Q+A++ +L  AQE+ G+++   I++ 
Sbjct: 16  QDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQEKFGYLAPEVIQLC 73

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A+ LDM + +   +ATFY Q+     GT   + VC    C + G   ++     K+    
Sbjct: 74  ADTLDMTFTQAYGVATFYHQYFKEEKGT-YVLDVCTCFTCQVCGGYDVLHYLEEKLGVHA 132

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                DG  + +E EC G+C +APM+ I       +LTP+++++++++   G+  +
Sbjct: 133 GETTDDGMFTIQEAECLGSCGSAPMMEITNGVYVHNLTPDKIDDLVESLRAGEVPS 188


>gi|218510339|ref|ZP_03508217.1| NADH-ubiquinone oxidoreductase chain E protein [Rhizobium etli
           Brasil 5]
          Length = 172

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/171 (34%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 7   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML   E L+      +  K      D   +   VEC G
Sbjct: 65  TLFHSEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTLSTVECLG 123

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
           AC  AP++ +G D +  L   R++ ++    T  G     G   D  S+AP
Sbjct: 124 ACEMAPVMQVGDDYHGGLDIARIDALLAKLRTEAGQ----GAGADLASAAP 170


>gi|269791765|ref|YP_003316669.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099400|gb|ACZ18387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 174

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +    + E I + P  + +  +I +L +AQE  G++       VA  L++   +V  + T
Sbjct: 12  QQFRELEEFIDKLPNKKGE--LITVLHKAQEIFGYLPEEVQAFVARKLEIPLAKVYGVVT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+ F + P G +  V VC  T C +RG E ++      +  K    + DG  S + + C
Sbjct: 70  FYSFFTMEPKG-KVAVSVCMGTACYVRGAEDVLHELEKAMGVKAGKVSEDGYFSLDTLRC 128

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            GAC  AP+V++    +  +TP  +  I+D + 
Sbjct: 129 VGACGLAPVVIVNGRVFGRVTPADVPGIVDQYR 161


>gi|169629224|ref|YP_001702873.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
           abscessus ATCC 19977]
 gi|169241191|emb|CAM62219.1| NADH-quinone oxidoreductase, E subunit NuoE [Mycobacterium
           abscessus]
          Length = 247

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 3/158 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
             E++ RYP  R  SA++PLL   Q ++G+V+ A IE  A  +++    V  +A+FY+ +
Sbjct: 37  AKEILDRYPSRR--SALLPLLHLVQSEDGYVTTAGIEFCARQVELTSAEVTAVASFYSMY 94

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    V VC  T C + G + ++     ++  +P     DG ++ E +EC   C 
Sbjct: 95  RREPTGD-YLVGVCTNTLCAVLGGDAILARLAGELGVRPGGTTEDGKVTLEHIECNAGCD 153

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            AP++M+  + +++ TP+    ++     G     R G
Sbjct: 154 YAPVLMVNWEFFDNQTPDGAAALVQGLRRGHVPAPRRG 191


>gi|302388829|ref|YP_003824650.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
           16646]
 gi|302199457|gb|ADL07027.1| NADH dehydrogenase subunit E [Thermosediminibacter oceani DSM
           16646]
          Length = 175

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
            EE      F   E     + +V+  Y       ++I +L + Q+  G++ R A+  +A 
Sbjct: 6   GEEHGIEKKFPDDEVDLSALEQVLKEY--RGVPGSLITVLQKVQDIYGYLPRKALYHIAR 63

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            + +   +V  +ATFY QF+L P+G +  + VC  T C + G E +     +++  K   
Sbjct: 64  EIGVKPAKVFGVATFYAQFRLKPIG-KHLIMVCHGTACHVNGAELITSALCDELKIKDGE 122

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQGD 178
             +DG  + + V C G C  AP++MI  + Y  LTP++  ++I D +    G 
Sbjct: 123 TTADGLFTLQNVACLGCCSLAPVMMIDGEAYGKLTPDKARDVIRDIYKRETGK 175


>gi|293371346|ref|ZP_06617783.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|298481912|ref|ZP_07000101.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
 gi|315919437|ref|ZP_07915677.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|292633706|gb|EFF52261.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|298271776|gb|EFI13348.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. D22]
 gi|313693312|gb|EFS30147.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 158

 Score =  197 bits (501), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           + A  +  +  ++        +I +L  AQ  +G++      ++A+ L +   +V  + T
Sbjct: 9   DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 66

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C
Sbjct: 67  FYTFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 125

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP+VMIG+  Y  L P  +++II+  
Sbjct: 126 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157


>gi|261346154|ref|ZP_05973798.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
 gi|282565807|gb|EFB71342.1| NADH dehydrogenase I, E subunit [Providencia rustigianii DSM 4541]
          Length = 179

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  ++E    +      Y  +R  +A I  L   Q+  GWV   AI  +A +L +    
Sbjct: 24  GFILTDEERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIAEVLGIPASD 81

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C + G + L      +++ +P     DG  +
Sbjct: 82  VEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTTEDGRFT 140

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                C G C   P +MI +DT+  + PE ++++++ +
Sbjct: 141 LLPTCCLGNCDKGPSMMIDEDTHTHVQPENIQKLLEQY 178


>gi|164686659|ref|ZP_02210687.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
           16795]
 gi|164604049|gb|EDQ97514.1| hypothetical protein CLOBAR_00254 [Clostridium bartlettii DSM
           16795]
          Length = 166

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +SA+I +L  AQ   G++ +     +A+ L ++  +V  + +FY+ F  +P+G    + V
Sbjct: 27  ESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPSKVYGVVSFYSYFSTNPIGE-YKISV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G +K++     ++  K      D   + E + C GAC  AP+V++    Y 
Sbjct: 86  CLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKFTLEGLRCVGACGLAPVVVVNGKVYG 145

Query: 159 DLTPERLEEIIDAFSTGQ 176
             TP+ + +I+D +   +
Sbjct: 146 QATPDDVSKILDNYRNLE 163


>gi|227822749|ref|YP_002826721.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
 gi|227341750|gb|ACP25968.1| NADH dehydrogenase I chain E1 [Sinorhizobium fredii NGR234]
          Length = 170

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L+ AQ++ G +    +E VA+IL +  I V E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALLIAQQEHGHLPGPVLEEVADILGVERIWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVG   H+Q+C    CML G E L++     +  +      +   +   VEC G
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCGSEALLKHLETVLEIRKGDTTPNRLFTLSTVECLG 120

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
           AC  AP++ +G D + +L   RL+ ++D      G  I
Sbjct: 121 ACEMAPVMQVGDDYHGNLDTGRLDALLDRLRAEAGQVI 158


>gi|237722432|ref|ZP_04552913.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
 gi|229448242|gb|EEO54033.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
          Length = 158

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  V  +  ++        +I +L  AQ   G++      ++A+ L++   +V  + TFY
Sbjct: 11  AEQVRTICDKH--GNNPGELINILHEAQHLHGYLPEEMQRIIASKLNIPVSKVYGVVTFY 68

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C G
Sbjct: 69  TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP+VMIG+  Y  L P  +++II+  
Sbjct: 128 ACGLAPVVMIGEKVYGRLQPIDVKKIIEEL 157


>gi|206901474|ref|YP_002251394.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
           H-6-12]
 gi|206740577|gb|ACI19635.1| NADH-quinone oxidoreductase chain e [Dictyoglomus thermophilum
           H-6-12]
          Length = 153

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +++  +P  R    +I +L   Q +    +++   I+  A  L +    V  +A+FY+ 
Sbjct: 5   QKILESFP--RDPDYIIEILHELQNRNPYNYLTPEDIKACAEYLGLPVSYVEGVASFYSM 62

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G R  +++C + PC L G E L+E    K++ K      D   + E   C G C
Sbjct: 63  FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLEKKLNIKVGETTEDKLFTLELTSCLGVC 121

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
             AP +MI  + Y +LT E++++I++ 
Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEE 148


>gi|319411272|emb|CBY91679.1| NADH-quinone oxidoreductase chain E (NADH dehydrogenase I, chain E;
           NDH-1, chain E) [Neisseria meningitidis WUE 2594]
          Length = 157

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K          DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQKFGISYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMTEEAIEKKLAEL 156


>gi|299146442|ref|ZP_07039510.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
 gi|298516933|gb|EFI40814.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 3_1_23]
          Length = 162

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           + A  +  +  ++        +I +L  AQ  +G++      ++A+ L +   +V  + T
Sbjct: 13  DMAEQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVT 70

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT F + P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C
Sbjct: 71  FYTFFTMIPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRC 129

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP+VMIG+  Y  L P  +++II+  
Sbjct: 130 VGACGLAPVVMIGEKVYGRLQPVDVKKIIEEL 161


>gi|253702591|ref|YP_003023780.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
 gi|251777441|gb|ACT20022.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 168

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
                N +I +Y        ++P+L   Q+  G++ R  I++VA  L++   ++  + TF
Sbjct: 15  DLAEANHIIDKYLT--LPGNLMPVLQGIQDAYGYIPRPTIDLVAERLNVYPSQIYGVLTF 72

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L P G +  ++VC  T C ++G E++ E    ++       ++D   ++E+V C 
Sbjct: 73  YAQFHLKPRG-KYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACL 131

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP+ M+  DTY  +T ++++EII+ ++
Sbjct: 132 GACGMAPLAMVNDDTYGKMTVQKVDEIIETYN 163


>gi|158321274|ref|YP_001513781.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158141473|gb|ABW19785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 157

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+E+   + EVI  +  ++    ++P+L  AQ+  G +S    + ++  + +    +  
Sbjct: 6   LSKENFEKLYEVIKEHKDTK--GPLMPVLHEAQKIFGCISLEVQKEISGKMSVPLSEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+QF L P G + H+ VC  T C +RG + +I+        +    +SDG  S E 
Sbjct: 64  VVTFYSQFTLEPKG-KYHIGVCLGTACYVRGSQAIIDKVTELTGVEIGKTSSDGRFSLEA 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++ +  + Y  LT   +  I++ +
Sbjct: 123 TRCIGACGLAPVLSVNDEVYGRLTANDIAGILEKY 157


>gi|89900290|ref|YP_522761.1| NADH-quinone oxidoreductase subunit E [Rhodoferax ferrireducens
           T118]
 gi|89345027|gb|ABD69230.1| NADH-quinone oxidoreductase, E subunit [Rhodoferax ferrireducens
           T118]
          Length = 162

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           SEES +   + +++YP  + QSAV+  L   Q++ G+VS  +  +VA  L MA + V E+
Sbjct: 3   SEESKVRFAQEVAKYPVDQKQSAVMACLAIVQQESGYVSAESEVLVAEFLGMAPMAVHEV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  +   PVG +  + VC   PC LR   K ++   +K+  K      DG  + ++ 
Sbjct: 63  TTFYNMYNQQPVG-KYKLNVCTNLPCQLRDGGKALKHLEHKLDIKMGETTPDGMFTLQQC 121

Query: 139 ECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
           EC GAC ++P++++   T    ++ ++L++++D    
Sbjct: 122 ECLGACADSPVLLVNDQTMCSFMSDDKLDQLVDGLRA 158


>gi|269139727|ref|YP_003296428.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
           EIB202]
 gi|267985388|gb|ACY85217.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Edwardsiella tarda
           EIB202]
 gi|304559594|gb|ADM42258.1| NADH-ubiquinone oxidoreductase chain E [Edwardsiella tarda FL6-60]
          Length = 166

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ GWV  AAI  +A +L +    V  +ATFY+Q    PVG R  V+ 
Sbjct: 33  RAASIEALKIVQKEHGWVPDAAIGAIAEVLGIPAADVEGVATFYSQIFRQPVG-RHIVRY 91

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G + +      K++ +P     DG  +     C G C   P +MI  D ++
Sbjct: 92  CDSVVCHINGYQGIKAALEQKLNIQPGETTFDGRFTLLPTCCLGNCDKGPNMMIDDDLHD 151

Query: 159 DLTPERLEEIIDAFS 173
            LTPER  E+++ + 
Sbjct: 152 HLTPERALELLERYK 166


>gi|116750129|ref|YP_846816.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699193|gb|ABK18381.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 151

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +  + +R+   R + A+IP+L   Q + G++   A++  A     + + V  ++TFY
Sbjct: 2   KDKLQRIFTRH--DRKRDALIPVLQDIQGEFGYLPPHAMQAAARHCRTSAVEVYGVSTFY 59

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+ SPVG R  V VC  T C + G  +++E C++++  +P     DG  + E V C G
Sbjct: 60  AQFKFSPVG-RHTVTVCQGTACHVMGGHRILEECKSQLGVQPGQTTPDGMFTLETVACIG 118

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           AC  +P V++ KDTY  + PER+ EI++A
Sbjct: 119 ACALSPAVVVDKDTYGRMKPERITEILNA 147


>gi|197120283|ref|YP_002140710.1| NADH dehydrogenase I subunit E [Geobacter bemidjiensis Bem]
 gi|197089643|gb|ACH40914.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
          Length = 169

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
                N +I +Y        ++P+L   Q+  G++ R  I++VA  L++   ++  + TF
Sbjct: 15  DLAEANHIIDKYLT--LPGNLMPVLQGIQDSYGYIPRPTIDLVAERLNVYPSQIYGVLTF 72

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y QF L P G R  ++VC  T C ++G E++ E    ++       ++D   ++E+V C 
Sbjct: 73  YAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETSADLRYTFEKVACL 131

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP+ M+  DTY  +T ++++EII+ ++
Sbjct: 132 GACGMAPLAMVNDDTYGKMTVQKVDEIIETYN 163


>gi|237715805|ref|ZP_04546286.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407420|ref|ZP_06083968.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|294646921|ref|ZP_06724542.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294810788|ref|ZP_06769434.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229443452|gb|EEO49243.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354228|gb|EEZ03320.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|292637866|gb|EFF56263.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294441976|gb|EFG10797.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 158

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  +  ++        +I +L  AQ  +G++      ++A+ L +   +V  + TFYT
Sbjct: 12  EQIKTICDKH--GNKPGELINILHEAQHLQGYLPEETQRIIASKLGIPVSKVYGVVTFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C GA
Sbjct: 70  FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGDTTPDGKFSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP+VMIG+  Y  L P  +++II+  
Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157


>gi|301060599|ref|ZP_07201434.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
 gi|300445302|gb|EFK09232.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
          Length = 158

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I +Y  S+ + A+IPLL   Q+  G+V   A+++VA  L +  + +  + TFYTQF L+
Sbjct: 11  LIEKY--SQKKGALIPLLQEIQDAYGYVPDDAVQLVAQELAIFPVEIYGVLTFYTQFYLT 68

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  ++VC  T C + G + L +    K+  +      DG  + E V C G C  AP
Sbjct: 69  PRG-KHTIRVCQGTACHVMGAKGLFDYLLEKLEVEEGETTKDGFFTVERVACLGCCGMAP 127

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           ++MI  D Y   T + +EE  + + +   ++
Sbjct: 128 VIMIDDDFYGRCTIQNIEETWNKYRSETAES 158


>gi|222053574|ref|YP_002535936.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
 gi|221562863|gb|ACM18835.1| NADH-quinone oxidoreductase, E subunit [Geobacter sp. FRC-32]
          Length = 168

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           EE Q      S  + + +++ ++          ++P+L   QE+ G+V +  I++VA  L
Sbjct: 7   EELQAEEIDLSAANQV-IDKFLT------LPGNLMPVLQGIQEEYGYVPKPTIDLVAERL 59

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++   ++  + TFY QF L P G +  ++VC  T C ++G E++++   +K+H       
Sbjct: 60  NVYPSQIYGVLTFYAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETT 118

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            D   ++E+V C GAC  AP+ M+  DT+  +T +++EEII  +S
Sbjct: 119 PDLRFTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEEIIADYS 163


>gi|293376705|ref|ZP_06622928.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sanguinis PC909]
 gi|325845177|ref|ZP_08168485.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sp. HGF1]
 gi|292644662|gb|EFF62749.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sanguinis PC909]
 gi|325488773|gb|EGC91174.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit [Turicibacter
           sp. HGF1]
          Length = 158

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           S + E+   ++  I  +        ++P+L  AQ+  G++     + ++N   ++  R+ 
Sbjct: 5   SLTSENFNKLDVFIQSHLSETE--GLMPILHEAQDIFGYIPLEVQKFISNRTGISVSRIH 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+QF   P G    + VC  T C ++G + +++  + ++  +P    SDG  S  
Sbjct: 63  GVVTFYSQFSTEPKGE-NVIGVCLGTACYVKGAQAILQKFKEELGIEPEQTTSDGKFSLV 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              C GAC  AP++ I  D Y  +   ++  I+  ++
Sbjct: 122 ATRCIGACGLAPVITINDDVYGKMDASQVSSILKKYN 158


>gi|46200218|ref|YP_005885.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
 gi|55980057|ref|YP_143354.1| NADH-quinone oxidoreductase subunit 2 [Thermus thermophilus HB8]
 gi|2499324|sp|Q56221|NQO2_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 2; AltName:
           Full=NADH dehydrogenase I chain 2; AltName: Full=NDH-1
           subunit 2
 gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109663|pdb|2FUG|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109671|pdb|2FUG|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109679|pdb|2FUG|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588589|pdb|3I9V|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588597|pdb|3I9V|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588605|pdb|3IAM|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588613|pdb|3IAM|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588621|pdb|3IAS|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588629|pdb|3IAS|B Chain B, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588637|pdb|3IAS|K Chain K, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588645|pdb|3IAS|T Chain T, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863605|pdb|3M9S|2 Chain 2, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863618|pdb|3M9S|B Chain B, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279865|gb|AAA97942.1| NADH dehydrogenase I, subunit NQO2 [Thermus thermophilus]
 gi|46197846|gb|AAS82258.1| NADH-quinone oxidoreductase chain E [Thermus thermophilus HB27]
 gi|55771470|dbj|BAD69911.1| NADH-quinone oxidoreductase chain 2 [Thermus thermophilus HB8]
          Length = 181

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 2/162 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   ++ E  ++YPP   ++A++PLL R Q++EGW+    IE +A ++      V
Sbjct: 1   MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           + +A+FY+ +Q  P G + H+QVC T  C L G E+L +     +   P     DG  S 
Sbjct: 61  MGVASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSV 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP++ +  + Y E +T  RLE ++     G+
Sbjct: 120 QKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161


>gi|161870819|ref|YP_001599992.1| NADH dehydrogenase subunit E [Neisseria meningitidis 053442]
 gi|161596372|gb|ABX74032.1| NADH dehydrogenase I chain E [Neisseria meningitidis 053442]
          Length = 157

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S ES   ++  +++YP  + +SA++  L  AQ ++GW++   I  VA+ + ++  +  E
Sbjct: 2   LSTESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPETIAFVADYIGISPAQAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + ++         DG  +  E
Sbjct: 62  VATFYNMYDLEPVG-KYKLTVCTNLPCALRGGMATGEYLKQRLGIGYGEITPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +T E +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAEL 156


>gi|289641423|ref|ZP_06473587.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508759|gb|EFD29694.1| NADH-quinone oxidoreductase, E subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 270

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              +EE+     ++I+RYP    +SA++PLL   Q ++G V+   +E  A++L +    V
Sbjct: 1   MPLTEETRAAAADIIARYPSGHSRSALLPLLHLVQAEDGCVTSEGVEFCASLLGITQAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFYT ++  PVG    V VC    C L G E++      ++        +DGT++ 
Sbjct: 61  SAVATFYTMYKRRPVGDW-LVSVCTNLSCALLGGEEVYARLSQELGVGHDQTTADGTITL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           E  EC  AC  AP++ +  + ++ + P+   EI++A   G+      G
Sbjct: 120 EHAECLAACDYAPVLTVNYEFFDQVDPQSASEIVEALRRGERPAPTRG 167


>gi|326791481|ref|YP_004309302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542245|gb|ADZ84104.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 165

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             ++     + + I+  P    + A+I +L +AQ   G++ +     V   L++   +V 
Sbjct: 9   KLTQSLYAELEQFINELPE--KKGALIAVLHKAQGLFGYLPKEVQMFVGEKLNIPVSQVY 66

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ F ++P G +  + VC  T C +RG +K+++  + ++  +     +DG  S +
Sbjct: 67  GVVSFYSFFTMTPKG-KYPISVCLGTACYVRGADKVLDAFKKELGIEVGQTTADGRFSLD 125

Query: 137 EVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172
            + C GAC  AP+V+IG+  Y  + + E +++I+  +
Sbjct: 126 ALRCVGACGLAPVVLIGEKVYGRIGSAEEVKKILSEY 162


>gi|312878992|ref|ZP_07738792.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Aminomonas paucivorans DSM 12260]
 gi|310782283|gb|EFQ22681.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Aminomonas paucivorans DSM 12260]
          Length = 172

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               +   I   P  R +  +I +L +AQ   G++       VA  LD+   +V  + TF
Sbjct: 9   QYQELGAFIDGLPEKRGE--LITVLHKAQGIFGYLPEEVQAFVAKKLDIPLAKVYGVVTF 66

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ F + P G +  V VC  T C +RG E+++      +  K    ++DG  S + + C 
Sbjct: 67  YSFFTMVPKG-KVVVSVCMGTACYVRGAEEVLAELEKVLGIKAGQVSADGHFSLDTLRCV 125

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP+V+I    Y  LTP ++  II  + 
Sbjct: 126 GACGLAPVVIINGKVYGRLTPAQIPGIIAPYR 157


>gi|153007186|ref|YP_001381511.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030759|gb|ABS28527.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 188

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 1/147 (0%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + EV+ RYPP R  +A++P L   QE  G+++ A   + A+ L  +  R  E+ATFY  F
Sbjct: 42  LAEVLRRYPPDRKAAAMLPALRIGQEIFGYLTPAVQRLAADRLGTSPARAEEVATFYVMF 101

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P+G R  V+VC    C L G ++L E  ++K        + DG ++  EVEC GAC 
Sbjct: 102 NTRPIG-RHLVEVCTNVSCCLTGGDRLFEYLKHKYGVTNGGTSQDGRVTLREVECLGACG 160

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
            AP +++ ++ YE L P+++EEI+   
Sbjct: 161 TAPAMLVDEEMYERLDPKKVEEILGRL 187


>gi|312878985|ref|ZP_07738785.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
 gi|310782276|gb|EFQ22674.1| NADH dehydrogenase subunit E [Aminomonas paucivorans DSM 12260]
          Length = 155

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE      E+++  P    +  +IP+L  AQ   G++   A++ ++  L +    +  + 
Sbjct: 5   EEVVSRTREIVA--PWKGRKGGLIPILQGAQNAFGYLPAEALQTISEELTVPLAEIYGVV 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF L P G R  ++VC  T C +RG  KL++  +  +  +      D   + E V 
Sbjct: 63  TFYAQFHLKPRG-RHIIRVCRGTACHVRGSLKLLQTVKESLKVEENGTTEDLRYTLEPVA 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++M+  DT+  L PE+L+EI+D +
Sbjct: 122 CIGACGLAPVIMVDSDTHGRLVPEKLKEILDHY 154


>gi|329914960|ref|ZP_08276196.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545010|gb|EGF30335.1| NADH-ubiquinone oxidoreductase chain E [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 159

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE +   ++  +S++P  + QSAV+  L  AQ++ GW+S   ++ +A+ L MA I V
Sbjct: 1   MLLSELAYKKIDREVSKFPADQKQSAVMGALAIAQDEAGWLSPPLMQEIADYLGMAPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+A FY  +  SP G +  + VC   PC L G EK     + K+        +DG  + 
Sbjct: 61  QEVAAFYEMYNTSPTG-KFKITVCTNLPCALSGGEKAARYLKQKLGIDYRETTADGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
            E EC GAC +AP++++        ++ ++++++++    
Sbjct: 120 REGECMGACGDAPVMLVNNKRMCSWMSNDKIDDLVEELKK 159


>gi|148266250|ref|YP_001232956.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146399750|gb|ABQ28383.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
          Length = 168

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 4/162 (2%)

Query: 13  PSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           P+    +EE      N++I ++        ++P+L   Q++ G++ R  I++VA  L++ 
Sbjct: 5   PAEVLPTEEIDLAAANQIIDKFLT--LPGNLMPVLQGIQDEYGYIPRPTIDLVAERLNVY 62

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY QF L P G +  ++VC  T C ++G E++++   +K+H      + D 
Sbjct: 63  PSQIYGVLTFYAQFHLKPRG-KFIIRVCVGTACHVQGAERIVDTFFDKLHIGHAETSPDL 121

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             ++E+V C GAC  AP+ M+  DT+  +T +++E II  +S
Sbjct: 122 RFTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEGIIADYS 163


>gi|226227805|ref|YP_002761911.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
 gi|226090996|dbj|BAH39441.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
          Length = 158

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
                  RYP     S  IP L R QE+ G+++ + I+ +   L +  ++V E+  FYTQ
Sbjct: 10  EFERWKQRYPSDFTGSLTIPCLRRIQEERGYIADSDIDELVAYLGVPRMQVDEVIAFYTQ 69

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P+G    +QVC    C LRG E L+     K+  +P    +DG  +   VEC  +C
Sbjct: 70  FTRVPLGNHH-LQVCHNLSCSLRGAEGLVGYLCAKLGIQPGETTADGKFTLSTVECLASC 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             APM+M+    +E+LTP  ++ +++  S 
Sbjct: 129 GTAPMMMVNDTYHENLTPASVDALLEDLSK 158


>gi|189910791|ref|YP_001962346.1| NADH dehydrogenase subunit E [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775467|gb|ABZ93768.1| NADH dehydrogenase (ubiquinone), E chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 162

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           ++ FS+ES      +I ++P  R  S ++P L   Q  +G+V    ++ +A+ +   ++ 
Sbjct: 2   AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT +   PVG + H+Q+C    C L G + + E   +K+  K      D  
Sbjct: 60  AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            + +EV+C GAC   P+  I    YE+LTPE +E+I+   
Sbjct: 119 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSEL 158


>gi|253583177|ref|ZP_04860375.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833749|gb|EES62312.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 170

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +   IS +     +SA+I +L +AQE  G++     E +A  L++   +V  + +FY 
Sbjct: 16  KELKSYISTFED--KKSALIIVLHKAQEIFGYIPAEVQEFIAEELEIPVAKVYGVVSFYN 73

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F + P G +  + VC  T C +RG  K++E    +++        DG  S + + C GA
Sbjct: 74  FFSMEPKG-KYQISVCTGTACYVRGAGKVLENLEKELNIGVGGVTKDGLFSLDCLRCVGA 132

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C  AP+V++GK+ +  + P  ++++I+ +   +
Sbjct: 133 CGLAPVVIVGKEVHGKVKPTDIKKLIETYMEKE 165


>gi|222099433|ref|YP_002534001.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
           4359]
 gi|221571823|gb|ACM22635.1| NADH-quinone oxidoreductase, E subunit [Thermotoga neapolitana DSM
           4359]
          Length = 170

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 23  AIWVNEVISRYPPS-RCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80
              + E+I +   S   +  +I  L   Q++   ++   A E+V+  L++   +V E+ T
Sbjct: 15  REAIVEIIRKAKESAEERDILINTLHEIQKRFENFIPPEAAEIVSEELNVPLSKVYEVLT 74

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT F   P G +  ++VC + PC +    ++++  +  +         D   + E   C
Sbjct: 75  FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKETLKIDFGQTTPDNMFTLEMTSC 133

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            G C  AP++M+  + Y ++TPE+++ +I+     +
Sbjct: 134 LGLCGVAPVIMVNDEYYGNMTPEKVKNLINRLRGEE 169


>gi|183220690|ref|YP_001838686.1| NADH-quinone oxidoreductase subunit E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779112|gb|ABZ97410.1| NADH-quinone oxidoreductase, chain E [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 164

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD--MAY 72
           ++ FS+ES      +I ++P  R  S ++P L   Q  +G+V    ++ +A+ +   ++ 
Sbjct: 4   AYQFSQESETRFQRLIPQFPSKR--SLILPCLFLLQADKGFVDTEGMQYIADRIGEPVSL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +ATFYT +   PVG + H+Q+C    C L G + + E   +K+  K      D  
Sbjct: 62  AHVHGVATFYTMYNKKPVG-KFHIQICANISCYLAGSDSITEHVCSKLGMKKGETTKDKK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            + +EV+C GAC   P+  I    YE+LTPE +E+I+   
Sbjct: 121 YTVDEVQCLGACGFGPVAQINDKYYENLTPESIEKILSEL 160


>gi|164688082|ref|ZP_02212110.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
           16795]
 gi|164602495|gb|EDQ95960.1| hypothetical protein CLOBAR_01727 [Clostridium bartlettii DSM
           16795]
          Length = 166

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 17  SFSEESAIWVNEV---ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +F E++    +E+   I     +  +SA+I +L  AQ   G++ +     +A+ L ++  
Sbjct: 3   NFVEQNRKLFDELDNLIDSLEVA-DESALIFVLKEAQGIFGYLPKEVQLHIADKLGVSPS 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V  + +FY+ F  +P+G    + VC  T C ++G +K++     ++  K      D   
Sbjct: 62  KVYGVVSFYSYFSTNPIGE-YKISVCLGTVCFVKGSDKVMAEFEKQLGIKAGETTEDLKF 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           + E + C GAC  AP+V++    Y   T + + +I+D +   +
Sbjct: 121 TLEGLRCVGACGLAPVVVVNGKVYGQATTDDVSKILDNYRNLE 163


>gi|146307438|ref|YP_001187903.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
 gi|145575639|gb|ABP85171.1| NADH dehydrogenase subunit E [Pseudomonas mendocina ymp]
          Length = 170

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            Q   F+ SE     +   +  Y   R  +A I  L   Q+  GWV   A E +  +L +
Sbjct: 11  IQTDRFTLSETERSAIEHEMHHYEDPR--AASIEALKIVQKARGWVPDGASEAIGEVLGI 68

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  +ATFY+Q    PVG R  ++VC +  C + G E ++     ++        +D
Sbjct: 69  PASDVEGVATFYSQIFRQPVG-RHVIRVCDSMTCYIGGHESVLAEMHKQLGIGLGQTTAD 127

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              +   V C G C  AP +MI  DT+ D+ P+ +  +++A+
Sbjct: 128 NRFTLLPVCCLGNCDKAPALMIDDDTFGDVRPDGVAALLEAY 169


>gi|310826463|ref|YP_003958820.1| HydC [Eubacterium limosum KIST612]
 gi|308738197|gb|ADO35857.1| HydC [Eubacterium limosum KIST612]
          Length = 156

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++   V E+++ +        ++ +L   QE+ G++     + +A+ LD+    V  +AT
Sbjct: 8   DNLDVVKEIVAEHRD--VPGCLMQILQETQEKYGYLPIELQQTIADELDIPLTEVYGVAT 65

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+QF L P G +  + VC  T C ++G + +++   + +         DG  S +   C
Sbjct: 66  FYSQFTLKPKG-KYKIGVCLGTACYVKGSQAILDKVTDTLGLAVGDTTEDGKFSVDATRC 124

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP++ I +D Y  L+   +++I++ +
Sbjct: 125 VGACGLAPVMSINEDVYGRLSVNEVKDILEKY 156


>gi|312200063|ref|YP_004020124.1| NADH-quinone oxidoreductase E subunit [Frankia sp. EuI1c]
 gi|311231399|gb|ADP84254.1| NADH-quinone oxidoreductase, E subunit [Frankia sp. EuI1c]
          Length = 274

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 32  RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           RYP  R +SA++PLL   Q +EG V+   I+  A  L +    V  +A+FYT ++  PVG
Sbjct: 53  RYPVGRQRSALLPLLHLVQAEEGCVTAEGIDFCAGQLGITAAEVQAVASFYTMYKRHPVG 112

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               V VC    C L G + + +    K+        +DGT++ E  EC  AC  AP++ 
Sbjct: 113 DW-LVSVCTNLSCSLVGGQDVYDRLSKKLGVGHDQTTADGTITLEHAECLAACDYAPVMT 171

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +  + Y+ +  E  E I++A + G+      G
Sbjct: 172 VNYEFYDGVDTEAAEGIVEALARGERPLPTRG 203


>gi|307297598|ref|ZP_07577404.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916858|gb|EFN47240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 164

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++E I           +I +L +AQE  G++S    + V+  LD+   +V  + 
Sbjct: 10  QQLYKELDEYIDS--VKGNTGVLINVLHKAQEIFGYLSEELQQHVSEKLDIPLSQVYGVV 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F + P G +  ++VC  T C ++G +K++E  +++++ +     SDG  S   V 
Sbjct: 68  TFYNFFSMKPKG-KNQIKVCLGTACYVKGADKILERLQDELNVEMNEPTSDGLFSIHAVR 126

Query: 140 CQGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFSTGQ 176
           C GAC  AP+V+IG  D Y  ++P+ + +I+D +   +
Sbjct: 127 CLGACSMAPVVLIGEDDYYGRVSPDEVSKILDKYRRAE 164


>gi|163848444|ref|YP_001636488.1| NADH-quinone oxidoreductase subunit E [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526372|ref|YP_002570843.1| NADH-quinone oxidoreductase subunit E [Chloroflexus sp. Y-400-fl]
 gi|163669733|gb|ABY36099.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450251|gb|ACM54517.1| NADH-quinone oxidoreductase, E subunit [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 4/175 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  E     +  +++RY   R  SAV+PLL  AQ+  G+++  AI  VA ILD+    V
Sbjct: 1   MTLLETHQAEIEAIVARYASKR--SAVLPLLYLAQDTYGYLTDEAIREVATILDLPPTDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+  FYT F   PVGT   +QVC   PC   G E+LI   +  +  +     +DG  + 
Sbjct: 59  YEVVGFYTLFYDRPVGTW-VLQVCDDVPCCFCGAEELISALKQALGIREEETTADGMFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           + V+C  AC  AP++    D   D+TPER+E +++       +  + G    R +
Sbjct: 118 QRVKCLAACDRAPVLQANLDYVYDVTPERVEVLLNNLRARAAEARKRG-VSGRFA 171


>gi|218295764|ref|ZP_03496560.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
 gi|218243923|gb|EED10450.1| NADH-quinone oxidoreductase, E subunit [Thermus aquaticus Y51MC23]
          Length = 181

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   ++    ++YPP   ++A++PLL R Q++EGW+    +E +A ++      V
Sbjct: 1   MGFFDDKKEFLEATFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERVEEIARLVGTTATEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           + +A+FY+ +Q  P G R H+QVC T  C L G ++L +    ++   P     DG  S 
Sbjct: 61  MGVASFYSYYQFVPTG-RYHLQVCATLSCKLAGADELWDYLTQELGIGPGEVTPDGLFSV 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP+V +  + Y E +T  RL+ +++    G+
Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKAGK 161


>gi|218961953|ref|YP_001741728.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma (hymA-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730610|emb|CAO81522.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma (hymA-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 158

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   ++++++++     + ++IPLL   Q++ G++SR  ++ +A+ +++    +  +A
Sbjct: 2   ENAYPELDKILAKFQD--KKGSLIPLLQEVQKERGYLSRETMQYLADKMEIPSAEIFGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138
           TFY+ F+L P G +  ++VC  T C +   + +       +         SD   +  EV
Sbjct: 60  TFYSMFRLKPQG-KHLIRVCKGTACHVSDVDSIKNAIIEILQLPEGENTTSDMQFTVMEV 118

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            C G C  AP++MI   TY  L PE +  I++ +  G  +
Sbjct: 119 ACLGCCSLAPVIMIDGKTYGKLVPEAIPAILNQYKNGDSE 158


>gi|227488704|ref|ZP_03919020.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542297|ref|ZP_03972346.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091365|gb|EEI26677.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181897|gb|EEI62869.1| NADH dehydrogenase subunit E [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 245

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 19/207 (9%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           +   ++ + ++     + E+  RYP    QSA++P+L   Q  +G VS   +  +A++L 
Sbjct: 21  DLADTTTNLTDADVADLKELAGRYPN--PQSALLPMLHLVQSVDGKVSGEGVRRIASLLH 78

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RN 128
           M   +V+ +ATFY+ +    VG +  V VC +  C   G + + +  +  +         
Sbjct: 79  MTEAQVIGVATFYSMYHTHEVG-KHLVGVCTSALCATMGGDIIYDAVKRHLELDGEEDTT 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-- 186
           SDG  + E +EC  AC  AP++M+  +  +++TP++  EI+D    GQ  +   GP+I  
Sbjct: 138 SDGMFTLERIECNAACDFAPILMLNWEYMDNMTPKKAIEILDKLRDGQEVSSTRGPKITS 197

Query: 187 -------------DRISSAPAGGLTSL 200
                         R    P  G  SL
Sbjct: 198 WRDNERVLAGFYDGRADEGPGAGPASL 224


>gi|311697063|gb|ADP99936.1| ATP synthase subunit E [marine bacterium HP15]
          Length = 158

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++          A++P+L   Q+  G++  +++ ++A  L ++   V  + +FY  F
Sbjct: 2   IERIVE--GLKHKPGALLPILHSVQDHFGYIPESSVPIIAEKLQLSRAEVHGVISFYHHF 59

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  PVG R  V VC    C   G   L E  + ++       +SD   + E V C G C 
Sbjct: 60  RSHPVGCR-VVHVCRAEACQAMGGRTLEEHIKARLGVDYHGTSSDNEFTLEPVYCLGNCA 118

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            AP + +  D +  +TP++ + ++D  +T   D ++
Sbjct: 119 CAPSIRVNDDIHGRVTPQKFDRLVDELTTTALDFVQ 154


>gi|149909801|ref|ZP_01898452.1| NuoE2 NADH I CHAIN E [Moritella sp. PE36]
 gi|149807133|gb|EDM67089.1| NuoE2 NADH  I CHAIN E [Moritella sp. PE36]
          Length = 207

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 103/196 (52%), Gaps = 12/196 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    + +++  YP  R  SA++P L  AQ+  G++   A   +A ILD+  I V E+A
Sbjct: 12  AELTAPIADIVKCYPTQR--SAIMPALYLAQDTYGFLDETAYRAIAEILDIPEIWVFELA 69

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FYT ++   +G + ++Q+C   PCMLRG   L+   + ++       ++DG  +   VE
Sbjct: 70  SFYTLYKNKKIG-KYNLQLCTNVPCMLRGAYDLLGHLQTRLGINKGDTSTDGLFTLTTVE 128

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS---------TGQGDTIRPGPQIDRIS 190
           C G+C  AP +M+ +  + +L+ ER+++++D  S           +    +  P +++ +
Sbjct: 129 CIGSCDLAPAMMVNETYHTNLSKERVDKLLDQLSQSSIKPSVEESKSSVEKSKPSVEKNN 188

Query: 191 SAPAGGLTSLLDNNSK 206
           ++   G ++  ++++ 
Sbjct: 189 ASTDKGPSTGTESSAG 204


>gi|332285013|ref|YP_004416924.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
 gi|330428966|gb|AEC20300.1| NADH dehydrogenase subunit E [Pusillimonas sp. T7-7]
          Length = 164

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GWVS   I  VA  L++  I V
Sbjct: 1   MLLSEQAYQKIDRELTKFPSDQQQSAIMAALTIAQEEKGWVSTEVIADVAAYLNVPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F    VG R  + VC   PC L    K  E  + K+         DG  + 
Sbjct: 61  QEVATFYNMFNTHQVG-RFKITVCTNLPCALSDGVKAAEYVKQKLGIDFHETTPDGLFTL 119

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
            E EC GAC +AP++++        ++ E+++ ++D   
Sbjct: 120 MEGECMGACGDAPVMLMNNRHMCVRMSSEKIDAMLDELK 158


>gi|148269833|ref|YP_001244293.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
           RKU-1]
 gi|170288519|ref|YP_001738757.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
 gi|281412284|ref|YP_003346363.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
           RKU-10]
 gi|147735377|gb|ABQ46717.1| NADH-quinone oxidoreductase, E subunit [Thermotoga petrophila
           RKU-1]
 gi|170176022|gb|ACB09074.1| NADH-quinone oxidoreductase, E subunit [Thermotoga sp. RQ2]
 gi|281373387|gb|ADA66949.1| NADH-quinone oxidoreductase, E subunit [Thermotoga naphthophila
           RKU-10]
          Length = 157

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 23  AIWVNEVISRYPP-SRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80
              + E++ +    +  +  +I  L   Q++   ++   A E+VA  L +   RV E+ T
Sbjct: 2   REVIVEIVQKAKETAEERDVLINTLHEIQKRFDNFIPPEAAEIVAEELGVPLSRVYEVLT 61

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FYT F   P G +  ++VC + PC +    ++++  +  +        SDG  + E   C
Sbjct: 62  FYTMFSTKPKG-KYVIRVCESLPCHVENGREVVKALKEILKIDFGQTTSDGLFTLEMTSC 120

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            G C  AP++M+  + Y ++TP R++++ID   
Sbjct: 121 LGLCGVAPVIMVNDEYYGNMTPGRVKDLIDRLR 153


>gi|289523837|ref|ZP_06440691.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502927|gb|EFD24091.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 163

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S  S   + +++ RY   +    ++ LL+  QE+  +V   A+  +A   D+   RV  
Sbjct: 2   LSATSKEAIEDLLYRY--EKNPRFLLQLLLDVQERFRYVPTEAMRSIARYFDIPESRVFA 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY    L P G +  ++VC  T C LRG ++++     K+         DG  + E 
Sbjct: 60  VATFYKVLSLVPKGEK-TIKVCQGTACHLRGGKQVLSAIGEKLGIAAGETTEDGIFTLET 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           V C G C  AP++M+G   Y  LT + +  I++A
Sbjct: 119 VNCLGCCAMAPVMMVGDKVYGKLTVDDVSRILEA 152


>gi|217968067|ref|YP_002353573.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
           6724]
 gi|217337166|gb|ACK42959.1| NADH-quinone oxidoreductase, E subunit [Dictyoglomus turgidum DSM
           6724]
          Length = 153

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            E++  +P  R    +I +L   Q      +++   I+  A  L++    V  +A+FY+ 
Sbjct: 5   QEILESFP--RDPDYIIEILHELQNNNPYNYLTPEDIKACAEYLELPVSYVEGVASFYSM 62

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G R  +++C + PC L G E L+E    K++ K      D   + E   C G C
Sbjct: 63  FSLKPRG-RYVIRLCDSPPCHLVGSESLLEYLERKLNIKVGETTEDRVFTLEVTSCLGVC 121

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDA 171
             AP +MI  + Y +LT E++++I++ 
Sbjct: 122 AVAPAMMINDEVYGNLTFEKIDKILEE 148


>gi|310659597|ref|YP_003937318.1| NADH:ubiquinone oxidoreductase, chain e [Clostridium sticklandii
           DSM 519]
 gi|308826375|emb|CBH22413.1| NADH:ubiquinone oxidoreductase, chain E [Clostridium sticklandii]
          Length = 175

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++ +I +Y   + + A I +L   QE+ G++   ++  +A    M   ++  +ATF
Sbjct: 17  DLSLIDPIIEKY--GKIKGATITILQGVQEEYGYIPSESLTYIAQKTGMKEAKLYGVATF 74

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           YTQF+++PVG +  + +C  T C + G   + +    ++         D   ++  V C 
Sbjct: 75  YTQFRMNPVG-KNLILLCQGTACHVNGASTIEKAICEELGITEGETTLDKIFTFTNVACL 133

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C  AP++MI  +TY  LTPE+  E++     
Sbjct: 134 GCCSLAPVMMINGETYAKLTPEKTVEVLRNLRK 166


>gi|148244393|ref|YP_001219087.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326220|dbj|BAF61363.1| NADH dehydrogenase I chain E [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 157

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLEIAT 80
           +   ++  I++YP  R  SAV+  L   Q +    +S + I+ VA+ LDM  I V E+AT
Sbjct: 6   AKNQIDVWIAKYPKDRQSSAVMQALKIVQAENKNILSASIIQEVADYLDMPDIVVQEVAT 65

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  +    VG +  ++ C    CML G + LI+   NK+  K      DG +S ++VEC
Sbjct: 66  FYENYNYKKVG-KYVIRFCHNISCMLNGADDLIKHLENKLGVKTGEVTLDGLISVKKVEC 124

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            GACV APM  I +  +E+LT +++++I+D   
Sbjct: 125 LGACVGAPMFQINEKYFENLTIDKIDKIVDNLK 157


>gi|257467681|ref|ZP_05631777.1| putative Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061975|ref|ZP_07926460.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313687651|gb|EFS24486.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 164

 Score =  194 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +   IS +     +S++I +L +AQE  G++     E +A  L++   +V  + +FY 
Sbjct: 10  KELKSYISTFED--KKSSLIIVLHKAQEIFGYIPAEVQEFIAEELEVPVAKVYGVVSFYN 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F + P G +  + VC  T C +RG  K++E    +++ +      DG  S + + C GA
Sbjct: 68  FFSMEPKG-KYQISVCTGTACYVRGAGKVLESLEKELNIEVGGVTKDGLFSLDCLRCVGA 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C  AP+V++GK+ +  + P  ++++I+ +   +
Sbjct: 127 CGLAPVVIVGKEVHGKVKPTDVKKLIEEYMEKE 159


>gi|258593431|emb|CBE69770.1| NADH-quinone oxidoreductase subunit E 2 (NADH dehydrogenase I
           subunit E 2) (NDH-1 subunit E 2) [NC10 bacterium 'Dutch
           sediment']
          Length = 171

 Score =  194 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 6/157 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +EE+   +  ++SRYP  R  SA++PL+   QE+ G+++  A+  +A  LD+  I+V E
Sbjct: 1   MTEET---IQRILSRYPERR--SALLPLMHLCQEEGGYLTADAMRELAARLDLPPIQVAE 55

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A FY  F+L P G R  + VC    C L G E++I      +         DG  + + 
Sbjct: 56  VAMFYDMFRLKPGGQR-EIWVCHNLSCALLGAEQVIRRLEEVLGVSAGETTPDGLFTIKR 114

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           VEC  AC  AP + +G D Y  ++   +E ++     
Sbjct: 115 VECLAACGRAPAIQVGSDYYGPVSHGEVETLVARLRK 151


>gi|300782455|ref|YP_003762746.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
 gi|299791969|gb|ADJ42344.1| NADH dehydrogenase I subunit E [Amycolatopsis mediterranei U32]
          Length = 285

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    F  +      E+I+RYP SR  SA++P+L   Q  +G+VS+  I   A  LD++ 
Sbjct: 44  PLEDIFDADIHAKAQELIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCAKQLDLSD 101

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH-----QKPLHR 127
             V  +ATFYT ++  P G    V VC  T C   G + + +  +  +            
Sbjct: 102 AEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAAMGGDAIYKRLQTHLGSEAEPLGHNET 160

Query: 128 ----NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
               N  G+++ E  EC  AC  AP++ +  + +++ T E+   ++DA   G+      G
Sbjct: 161 AGTPNEPGSITLEHAECLAACDLAPVIQVNYEYFDNQTEEKAVALVDALQAGKKPAPTRG 220

Query: 184 -PQIDRISSA 192
            P  +   + 
Sbjct: 221 APLTNFKGAE 230


>gi|189467140|ref|ZP_03015925.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
           17393]
 gi|189435404|gb|EDV04389.1| hypothetical protein BACINT_03524 [Bacteroides intestinalis DSM
           17393]
          Length = 158

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  V  +  ++        +I +L  AQ   G++      ++A  L++   RV  + TFY
Sbjct: 11  AEQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFY 68

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C G
Sbjct: 69  TFFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVG 127

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP+VMIG+  Y  L    ++++++  
Sbjct: 128 ACGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157


>gi|281357848|ref|ZP_06244334.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281315795|gb|EFA99822.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 176

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 20  EESAIWVNEVISRY--------PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            E     +E + RY         P R + ++I +L RAQ   G++S      VA  L+++
Sbjct: 16  PEEQQKFDE-LERYIGTLQVGDNPDRRRGSLIQILHRAQHLFGYLSEEVQSFVAARLNIS 74

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              V  + +FY+ F   P+G R  + VC  T C ++G  K+++  + ++  +      DG
Sbjct: 75  RAEVYGVISFYSYFIDQPIG-RYKINVCTGTACFVKGAPKVLDEFKRRLEIREGESTPDG 133

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                 + C GAC  AP+VM+ +  Y ++T E++ +I+   +
Sbjct: 134 KFFLGALRCVGACSLAPVVMVNEKVYGNVTAEKVADILQDCA 175


>gi|256371184|ref|YP_003109008.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007768|gb|ACU53335.1| NADH-quinone oxidoreductase, E subunit [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 208

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F  E A    E++  YP  R  SAV+PL   AQEQ+GW++  AI  +A ++      V  
Sbjct: 4   FEGEFAARAEELVGLYPERR--SAVLPLCHLAQEQDGWLTPEAIRHIAELVGQTPAEVQG 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            A+FY    L PVG R  V +C    C+LR  ++L+E     +         DG ++ EE
Sbjct: 62  AASFYDMLHLEPVG-RYVVGICTNIACLLRDGDRLLEAAEELLGVGVGGTTPDGLITLEE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ--GDTIRPGPQIDRISSAPA 194
           VEC   C  AP V +    +  +TP   EE++     G+  G+    G       +AP 
Sbjct: 121 VECVAHCDKAPAVQVNYRYFGPVTPTSFEELVGQLRRGELDGEVPPHGVLSRVRRAAPP 179


>gi|38048647|gb|AAR10226.1| similar to Drosophila melanogaster CG5703 [Drosophila yakuba]
          Length = 155

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E+     F F+ E+   V  ++S YP    + A+IPLL  AQ Q GW+  +A
Sbjct: 31  LFVHRDTPEDNPNIPFEFTAENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISA 90

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA IL +  +RV E+ATFYT F   P G + H+QVC TTPC LRG + ++E C+ ++
Sbjct: 91  MHKVAEILQLPNMRVYEVATFYTMFMRKPTG-KYHIQVCTTTPCWLRGSDDILETCKKQL 149

Query: 121 HQKPL 125
                
Sbjct: 150 GIGVG 154


>gi|167752243|ref|ZP_02424370.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
 gi|167660484|gb|EDS04614.1| hypothetical protein ALIPUT_00485 [Alistipes putredinis DSM 17216]
          Length = 164

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+     +  V  +Y        +I +L   Q+  G++ +   E++A  L ++  RV  
Sbjct: 6   LSQRRIDEIKNVCRKYGND--PGELINILHGVQDTLGYLPKEVQELIALELGISAARVYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY+ F + P G +  + VC  T C +RG EK+++  R ++  +      DG  S + 
Sbjct: 64  VVSFYSFFTMKPKG-KYPISVCMGTACYVRGGEKVLDEFRRQLGIEVGGTTPDGLFSLDS 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           + C GAC  AP+VMIG   Y  L    ++ I+D     + +
Sbjct: 123 LRCVGACGLAPVVMIGPRVYGRLKVTDVKGILDEIQALEKE 163


>gi|257054396|ref|YP_003132228.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
 gi|256584268|gb|ACU95401.1| NADH dehydrogenase subunit E [Saccharomonospora viridis DSM 43017]
          Length = 253

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           +P +  F  E      ++ +RYP +R  SA++P+L   Q  +G+VS+  I   A  LD+ 
Sbjct: 11  KPETDPFGPEIEEQAQQLAARYPQAR--SALLPMLHLVQSVQGYVSQEGIAFCARQLDLT 68

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-------- 123
              V  +ATFYT ++  P G    V VC  T C   G +++ +     + +         
Sbjct: 69  EAEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDEIYKRLSEHLGEDGKPLGHEE 127

Query: 124 -PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                   G+++ E  EC  AC   P++ +  + +++ TPE+  E++DA   G+      
Sbjct: 128 TVGEPGEPGSITLEHAECLAACDFGPVLQVNYEYFDNQTPEKAVELVDALRRGEKPQPTR 187

Query: 183 G-PQIDRISSA 192
           G P  D  S  
Sbjct: 188 GAPLTDFRSVE 198


>gi|224535654|ref|ZP_03676193.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522727|gb|EEF91832.1| hypothetical protein BACCELL_00518 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 158

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  +  ++        +I +L  AQ   G++      ++A  L++   RV  + TFYT
Sbjct: 12  EQVRAICDKH--GNQPGELINILHEAQHLHGYLPEEMQRLIAAKLNVPVSRVYGVVTFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C GA
Sbjct: 70  FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKFSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP+VMIG+  Y  L    ++++++  
Sbjct: 129 CGLAPVVMIGEKVYGRLQAVDVKKVLEEL 157


>gi|217077617|ref|YP_002335335.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217037472|gb|ACJ75994.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 162

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 22  SAIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLE 77
           +   + +++      R   Q  +I +L + QE  +  ++   A EVV+  L +   ++ E
Sbjct: 3   AKEEIKKIVHEAKNERLEEQDILIYILHKIQEKIENNYIPEYAAEVVSEELKIPTSKIYE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+ F     G +  ++VC + PC +    ++I   + ++        SDG  + EE
Sbjct: 63  VLTFYSMFSTKKRG-KYVIRVCTSLPCHVANGREIINTLKEELKIDFNQTTSDGLFTLEE 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             C G C  +P++MI  + Y DLTP+++ EII+    G+
Sbjct: 122 SGCLGLCGVSPVIMINNEYYGDLTPQKVREIINNLKGGE 160


>gi|294056099|ref|YP_003549757.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615432|gb|ADE55587.1| NADH-quinone oxidoreductase, E subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 166

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +   E+   +++++ RYP  R  SA +PL    QE +G++S  AIE +A  L++  I +
Sbjct: 1   MNLKPETIEKIDKLVPRYPVMR--SAALPLCHLVQEDQGYLSPEAIEWIAERLELQPINI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           LEI TFY   +  P G + HV+VC T PC L G  +       +++ K  H + DG ++ 
Sbjct: 59  LEIVTFYPMLRTEPTG-KYHVRVCRTLPCALSGAYQTCARLEEELNVKVGHTSEDGLVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           E VEC   C  AP+VM+G+D Y D+ P++  E+     +G+
Sbjct: 118 EYVECHADCGRAPVVMVGEDEYTDIDPDKAAELAAQMKSGE 158


>gi|193215668|ref|YP_001996867.1| NADH-quinone oxidoreductase subunit E [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089145|gb|ACF14420.1| NADH-quinone oxidoreductase, E subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 195

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P+   F +     +    SRYP  + ++AV+  L  AQ + GW+S  A+++VA  L+M  
Sbjct: 35  PAEIVFDDADLQQIEAYKSRYP--KKEAAVMRTLWLAQTKFGWLSEDALKLVAKTLEMPP 92

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  +A+FYT +   P G + H+ VC    C L G  ++    + K   +     +DG 
Sbjct: 93  ADVFGVASFYTMYFKKPKG-KTHLAVCTNISCSLCGGYEIYNYLKEKFGLENGDVTADGK 151

Query: 133 LSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDA 171
           LS EE EC G+C  AP + +   +  E+LT E+LE  +  
Sbjct: 152 LSLEEAECLGSCGTAPAMQVNNGEYVENLTVEKLEAFLKE 191


>gi|322421846|ref|YP_004201069.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320128233|gb|ADW15793.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 168

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           EE        +E +     ++I +Y        ++P+L   Q+  G+V +  I++VA  L
Sbjct: 7   EEVPAEEIDLTEAN-----QIIDKYLT--LPGNLMPVLQGIQDAYGFVPKPTIDLVAERL 59

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++   ++  + TFY QF L P G R  ++VC  T C ++G E++ E    ++        
Sbjct: 60  NVYPSQIYGVLTFYAQFHLKPRG-RYIIRVCVGTACHVQGAERITETFFGRLGIGHAETT 118

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            D   ++E+V C GAC  AP+ M+  DT+  +T ++++EII+ ++
Sbjct: 119 EDLRYTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVDEIIETYN 163


>gi|310778427|ref|YP_003966760.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747750|gb|ADO82412.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 162

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
              EE    ++E I        Q A+I +L +AQE  G++ +     VA  LD+   +V 
Sbjct: 6   QLKEECFKQLDEFILNLED--KQGALITVLHKAQEIFGYLPKEIQSFVAERLDLPLAKVY 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ F ++P G +  + VC  T C +RG  K++E  + ++  +     SDG  S +
Sbjct: 64  GVVSFYSFFTMTPKG-KYPISVCMGTACYVRGAGKVLEDFQKQLGIEVGETTSDGIFSID 122

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + C GAC  AP+V++G+D +     + ++ I+D +  
Sbjct: 123 ALRCVGACGLAPVVLVGEDVFGKDEAKDVKTILDTYKA 160


>gi|160936106|ref|ZP_02083479.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440916|gb|EDP18640.1| hypothetical protein CLOBOL_01002 [Clostridium bolteae ATCC
           BAA-613]
          Length = 171

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     + E+ + Y     + ++I +L  AQ   G++     +V+A+ LD++   V  + 
Sbjct: 15  EALLKRIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPLEVQKVIADALDISLAEVSGVV 72

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F   P G    ++VC  T C +RG +K++E  +  +  +     +D   ++E   
Sbjct: 73  TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERLKELLDVEIGETTADRRFTFEVAR 131

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C GAC  AP + I    Y+ + P++LE+I++ +   +G  
Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEGQE 171


>gi|325290780|ref|YP_004266961.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
 gi|324966181|gb|ADY56960.1| NADH dehydrogenase subunit E [Syntrophobotulus glycolicus DSM 8271]
          Length = 161

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
             +    +I +L +AQE  G +S   + V++  L++    V  +ATFY+QF+ +P+G R 
Sbjct: 24  NKKEPGNLITVLQKAQEIYGHLSEEIMRVISEKLEIPAAEVFGVATFYSQFRFTPMG-RN 82

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC  T C +RG   ++      +  K      DG  + E V C GAC  AP++ I  
Sbjct: 83  VIRVCMGTACHVRGALNVLRTIERGLGIKAGETTQDGRFTLETVACIGACGLAPVISINN 142

Query: 155 DTYEDLTPERLEEIIDAF 172
             Y ++TP+ + + +D +
Sbjct: 143 MVYGNMTPQAVMQTLDKY 160


>gi|254166690|ref|ZP_04873544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289596481|ref|YP_003483177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
           boonei T469]
 gi|197624300|gb|EDY36861.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|289534268|gb|ADD08615.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aciduliprofundum
           boonei T469]
          Length = 149

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V ++I+++      S ++ +L   Q++ G++   AI+ +A  L M    V + A+FY
Sbjct: 2   EEKVLQIINKHKN--KDSKLLAILHDVQDEFGYIPEEAIKTIAKELGMKKGEVYDAASFY 59

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F+  P G +  V +C    C ++G E++IE    +   K      DG  +++ VE  G
Sbjct: 60  SFFRFKPEG-KHEVMICDCIVCHIKGSERIIERIEKEFGVKMGETTKDGKFTFKIVEGLG 118

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
            C ++P++MI    Y DLTP+++ EI+
Sbjct: 119 HCEHSPVMMIDGKIYGDLTPDKVVEIL 145


>gi|313679589|ref|YP_004057328.1| NADH dehydrogenase subunit e [Oceanithermus profundus DSM 14977]
 gi|313152304|gb|ADR36155.1| NADH dehydrogenase subunit E [Oceanithermus profundus DSM 14977]
          Length = 190

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV ++YP  R +SA++PLL R Q+ EG+V    ++ +A ++      V
Sbjct: 1   MGFFDDKQEWLAEVFAQYPEDRRRSALMPLLRRVQQDEGYVDFERMKEIAELVGTTATEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +Q  P G + H+QVC T  C L G ++L      ++   P     DG  S 
Sbjct: 61  AGVMSFYSYYQGLPTG-KYHIQVCRTLSCKLAGADELWHTLTERLGILPGEVTPDGRFSL 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
           + VEC G+C   P++ +G + Y E +T  RLE +++  
Sbjct: 120 QAVECLGSCHTGPVIQVGDEPYVERVTKARLEALLEGL 157


>gi|88812972|ref|ZP_01128215.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
 gi|88789750|gb|EAR20874.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrococcus
           mobilis Nb-231]
          Length = 167

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 13/162 (8%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE-QEGWVSRAAIEVVANILDMAYIRVL 76
            S E    ++  ++++P    +SAVIP L  AQE   GW+SR  +E VA  L++  + V 
Sbjct: 11  LSAEQRSEIDHWLAKFPGEGKRSAVIPALHIAQEGNGGWLSRELMEAVAEYLELPPVAVY 70

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ TFY+ F L P G R  V +C    C+LRG E+++E   NK+        +DG ++ +
Sbjct: 71  EVGTFYSMFDLKPTG-RHKVNICTNISCLLRGAERIVEHVENKLGISVGETTADGRITLK 129

Query: 137 EVECQG------ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                G      AC  APM+++ ++ + DLTPE+++EI+D  
Sbjct: 130 -----GEEECLAACAAAPMMLVDEEYHVDLTPEKVDEILDKL 166


>gi|149374624|ref|ZP_01892398.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
           DG893]
 gi|149361327|gb|EDM49777.1| NADH-quinone oxidoreductase, E subunit [Marinobacter algicola
           DG893]
          Length = 171

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+      +      F         + E ++ Y   + Q+A I  L   Q + GWV   A
Sbjct: 2   MATTPQTHQIIGTDGFELHPADETAMLEEMAHY--EQPQAACIEALKVVQRRHGWVPDGA 59

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           I  +A +L +    V  +ATFY+     PVG R  V VC ++ C L G ++L +   + +
Sbjct: 60  IGAIAKVLGIGPASVEGVATFYSLIFRQPVG-RHVVLVCDSSSCFLSGFDELKQALASHL 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                    DG  +   V C GAC  AP +MI  DTY  ++P+ L  +++ +
Sbjct: 119 GIDYGQTTEDGRFTLLPVCCLGACDGAPALMIDNDTYGPVSPDDLPGLLEGY 170


>gi|296134043|ref|YP_003641290.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
 gi|296032621|gb|ADG83389.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
           JR]
          Length = 163

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               +++VI  Y  +    A+IP+L +AQE  G++       ++  L +    V  + TF
Sbjct: 13  QFAELDKVIEEYRGT--PGALIPVLHKAQEIFGYLPEEVQYRISQGLGLPLADVYGVVTF 70

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y++F L P G +  + VC  T C ++G  +L+     ++  KP     DG  S E   C 
Sbjct: 71  YSRFTLVPKG-KHDIGVCLGTACYVKGAGELVGWLDKELGLKPGGITRDGLFSLETTRCV 129

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP+V IG++    LT E+  EII  + 
Sbjct: 130 GACGMAPVVTIGEEVKGRLTVEQFSEIIREYQ 161


>gi|183599633|ref|ZP_02961126.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
 gi|188021885|gb|EDU59925.1| hypothetical protein PROSTU_03120 [Providencia stuartii ATCC 25827]
          Length = 180

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
            +E Q   F  +E     +      Y   R  +A I  L   Q+  GWV   AI  +A +
Sbjct: 19  PQETQ-HGFVLTEAERAEIEGEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIAEV 75

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    V  +ATFY+Q    PVG R  ++ C +  C + G + L     N+++ +P   
Sbjct: 76  LGIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIINQLNIRPGQT 134

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            +DG  +     C G C   P +MI +DT+  + PE ++++++ +
Sbjct: 135 TADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPEDIKKLLEQY 179


>gi|301059362|ref|ZP_07200289.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300446591|gb|EFK10429.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 162

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E       + SR+  S+    +IP+L   QE  G++  +A   ++   ++    +  +A
Sbjct: 12  DEENARFEGITSRHKDSK--GGLIPILHEVQELYGYLPDSAFVRISKTCNIPLSEIYGVA 69

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F L P G +  + VC  T C ++G  ++++  R ++         DG  S     
Sbjct: 70  TFYSFFSLKPKG-KYEISVCMGTACYVKGAGRILDRIREELDIDVGDCTEDGKFSLSACR 128

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++ + +  +  L    + E+++ +
Sbjct: 129 CLGACGLAPVIKVNEQVHGRLALADVSEVLNQY 161


>gi|154495356|ref|ZP_02034361.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
           43184]
 gi|154085280|gb|EDN84325.1| hypothetical protein PARMER_04413 [Parabacteroides merdae ATCC
           43184]
          Length = 165

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 25  WVNEVIS---RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
            ++E+++    +        +I +L  AQ   G++ R   E++A  L +   +V  + TF
Sbjct: 12  KIDELLAVCDEHNND--PGELINILHAAQGIFGYLPREVQEIIAGRLYIPVSKVYGVVTF 69

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ F ++P G +  + VC  T C +RG EK++E  + ++  K     SDG  S + + C 
Sbjct: 70  YSFFTMTPKG-KYPISVCLGTACYVRGAEKVLEEFQRQLEIKVGETTSDGLFSLDCLRCV 128

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP+V I    Y  LTPE++ +I+  +
Sbjct: 129 GACGLAPVVTIAGKVYGRLTPEKVRDILSEY 159


>gi|147677714|ref|YP_001211929.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273811|dbj|BAF59560.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 192

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           +V R+  E          +++   +N +I      + Q  +I +L +AQ+  G++     
Sbjct: 18  AVERIGRELQDDER----DKNFNELNLIIESLAGDKGQ--LIRILQKAQDIFGYLPDDVQ 71

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A  L +    V  + TFY+ F   P G +  + VC  T C ++G +++++  + ++ 
Sbjct: 72  AFIAERLRVPVAEVNGVVTFYSLFSTRPKG-KYIINVCMGTACYVKGAQQVMDALKKRLK 130

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
                   DG  + +   C GAC  AP++ +       + P +++E+I     G+ + 
Sbjct: 131 IDEGETTPDGLFTLKSTRCVGACGLAPILAVNGKVQGMVDPGKIQELIKNCRKGEKNE 188


>gi|269469172|gb|EEZ80714.1| NADH dehydrogenase I chain E [uncultured SUP05 cluster bacterium]
          Length = 157

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLE 77
           S ++   ++  +++YP  +  SAV+  L   Q +    +S  AI+ VA+ LDM  I   E
Sbjct: 3   STKAKKQIDSWVAKYPEGKQSSAVMEALKIVQAENDNTLSTDAIQAVADYLDMPGIAAAE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  +   PVG +  ++ C    CML G + LI     K+  K      +G ++ ++
Sbjct: 63  VATFYENYNHKPVG-KHTIRFCHNISCMLNGADDLIAYLEKKLKVKTGEVTKNGLINVKK 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           VEC GACV APM  IG   YE+LT ++++EI+D   
Sbjct: 122 VECLGACVGAPMFQIGDQYYENLTKQKIDEIVDGLK 157


>gi|238023163|ref|ZP_04603589.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
 gi|237865546|gb|EEP66686.1| hypothetical protein GCWU000324_03089 [Kingella oralis ATCC 51147]
          Length = 157

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++G+++   IE VA  + +A +   E
Sbjct: 2   LSAQSLKEIDIELAKYPADQRRSAIMSALRIAQVEKGYLAPETIEFVAKYIGIAPVAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        +DG  +  E
Sbjct: 62  VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIDYGETTADGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +  + +E+ +   
Sbjct: 121 GECMGACGDAPVMLVNNHSMCSFMDADAIEKKLAEL 156


>gi|239816479|ref|YP_002945389.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
 gi|239803056|gb|ACS20123.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus S110]
          Length = 182

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           S           +               +++YP +  QSAV+  L   Q+ EG++S    
Sbjct: 5   STHHDTAPSAPSAP--LKPAILERFAREVAKYPEAGKQSAVMACLAIVQQDEGFISMQRE 62

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             +A  L MA I V E+ TFY  +   PVG +  + VC   PC LR     +     K+ 
Sbjct: 63  REIAEYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKLG 121

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174
            K     +DG  + ++ EC GAC ++P++++   T    ++ E+L+++ID    
Sbjct: 122 IKMGETTADGMFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIDGLRA 175


>gi|317401992|gb|EFV82592.1| respiratory-chain NADH dehydrogenase I [Achromobacter xylosoxidans
           C54]
          Length = 164

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V
Sbjct: 1   MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATDIIEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVG +  + VC   PC LR  E+  +  + K+        +DG  + 
Sbjct: 61  QEVATFYNMFDVKPVG-KTKIAVCTNLPCALRDGERAGDYLKRKLGVDYRETTADGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174
            E EC GAC ++P++++        +T E+L+ ++ A   
Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALKA 159


>gi|86160616|ref|YP_467401.1| NADH-quinone oxidoreductase subunit E [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197124713|ref|YP_002136664.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
 gi|220919434|ref|YP_002494738.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|85777127|gb|ABC83964.1| NADH dehydrogenase subunit E [Anaeromyxobacter dehalogenans 2CP-C]
 gi|196174562|gb|ACG75535.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter sp. K]
 gi|219957288|gb|ACL67672.1| NADH-quinone oxidoreductase, E subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 171

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 1/149 (0%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  +++RYPP R  +A+IP L   QE  G++S A   + A  L  +  R  E+ATFY  
Sbjct: 24  ELAGILNRYPPDRKAAAMIPALRLGQEIFGYLSPAVQRLAAERLGTSPARAEEVATFYVM 83

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P   R  V+VC    C L G E++ E  + K+         DG ++  EVEC G+C
Sbjct: 84  FHTEPP-ARHVVEVCTNVSCCLTGGERIFEHLKKKLELANGQSTRDGRITLREVECLGSC 142

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             AP +++ ++ +E LT +++++I+    
Sbjct: 143 GTAPAMLVDEEMHERLTIQKVDQIVGGLK 171


>gi|223937080|ref|ZP_03628988.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
 gi|223894361|gb|EEF60814.1| NADH-quinone oxidoreductase, E subunit [bacterium Ellin514]
          Length = 178

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
           S ++         +F         +NE+++ YP  R  SA +  L   QE  G+VS+ AI
Sbjct: 6   STQQNRASVLSTGNFVVPPALEAELNELVTHYPVKR--SASLMFLHAIQEHFGYVSKEAI 63

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
           E +A  L++  I V E+ TFY  F+  P G +  ++VC T  C L G  KL +    K+ 
Sbjct: 64  EWIAKKLELQPINVYELVTFYPMFRQEPAG-KHQIKVCRTLSCALGGSHKLHKYFCEKLG 122

Query: 122 QKPL----HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                       DG  S E VEC  +C  AP++M  +D YE +T ++ +EI+    
Sbjct: 123 LDSHAHGVQTTKDGKYSVEFVECLASCGTAPVMMCNEDFYEGVTNQKADEILGKCK 178


>gi|302342221|ref|YP_003806750.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
           2075]
 gi|301638834|gb|ADK84156.1| NADH-quinone oxidoreductase, E subunit [Desulfarculus baarsii DSM
           2075]
          Length = 154

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             A+ ++E+I RYP       +I LL   Q   G++S  A++ V +   +   R   +AT
Sbjct: 3   AQAVQLDELIDRYPA--KPEYLIFLLQDIQAAYGYISPEAMDRVCDHAGVPKSRAYSVAT 60

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F L P G    ++VC  T C L+G ++L +    K+  KP   + D   S E V C
Sbjct: 61  FYQSFSLKPKGE-HKIRVCMGTACHLKGAQRLADAVERKLGIKPDETSPDLKFSLEAVHC 119

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            GAC  AP+V++  + +   TP +L++++D
Sbjct: 120 LGACAMAPVVVVDDEYHAGATPGKLDKLLD 149


>gi|229490789|ref|ZP_04384624.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
           SK121]
 gi|229322179|gb|EEN87965.1| NADH-quinone oxidoreductase subunit e [Rhodococcus erythropolis
           SK121]
          Length = 274

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRC-----QSAVIPLLMRAQEQEGWVS 57
           VR  A   + P   +           VI+RY          +SA++PLL   Q ++G+++
Sbjct: 25  VRPGARSSYPPDVLA---RLDADAETVIARYREPDAAATTSRSALLPLLHLVQSEDGYIT 81

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
            A I+  +  L +    V  ++TFY+ ++  P G    V VC  T C + G + ++    
Sbjct: 82  PAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALE 140

Query: 118 NKIHQ-----KPLHR--NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             +       +  H    SDG ++ E +EC  AC  AP++MI  + +++ TPE    ++D
Sbjct: 141 EHLGSAGSRDEGGHSISTSDGKITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVD 200

Query: 171 AFSTGQGDTIRPG 183
           A   G+  T   G
Sbjct: 201 ALRAGERVTPSRG 213


>gi|332800414|ref|YP_004461913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
           sp. Re1]
 gi|332698149|gb|AEE92606.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Tepidanaerobacter
           sp. Re1]
          Length = 167

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   VNE++ +Y      S +I +    QE   ++    +  ++  + +A  R+  +ATF
Sbjct: 9   NFEKVNEILEKY--DYKPSNLISIFQEVQEIYRYLPEEILVYISTAMRIAPSRIFGVATF 66

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVEC 140
           Y  F L P G +  ++VC  T C +R  +K++   +  ++ K       D   + E V C
Sbjct: 67  YESFSLEPKG-KNLIKVCDGTACHVRNSDKILSTTKEILNLKGDAKTTDDMLFTLETVSC 125

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            GAC  AP+++I    Y ++TPE++ ++I+    
Sbjct: 126 LGACGLAPVIVINDKVYGNMTPEKVRQLINDIKE 159


>gi|325267319|ref|ZP_08133981.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
 gi|324981256|gb|EGC16906.1| NADH-quinone oxidoreductase subunit E [Kingella denitrificans ATCC
           33394]
          Length = 157

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +    ++  +++YP  + +SA++  L  AQ + G+++   IE VA  + +  I   E
Sbjct: 2   LSAQLLQQIDTELAKYPADQRRSAIMGALRIAQTELGYLAPETIEYVAQYVGIPAIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        +DG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIDYGETTADGKFTLVE 120

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAF 172
            EC GAC +AP++++   T    +  E +++ +   
Sbjct: 121 GECMGACGDAPVMLLNNHTMCSYMDAEAIDKKLAEL 156


>gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 639

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 13/193 (6%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
           + +P +  F+ +S   ++E++  YP    +SA++PLL   Q  E  VS A IE +A IL 
Sbjct: 4   KLEPETPFFAAKS-ELLSEILGSYPEYGRRSAIMPLLWAVQRAERQVSEARIEEIAAILG 62

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +    V  + +FY+ +   PVG R H+Q+C T  C L G +++ +    ++       ++
Sbjct: 63  LTATEVKGVMSFYSTYHERPVG-RYHLQLCSTLSCSLAGSDEMYDFLVTELGIVNGETDA 121

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR- 188
           +G  S ++VEC G+C  AP++ +  D YE +T  R + +++A   G+    +P PQ +R 
Sbjct: 122 EGLFSLQKVECLGSCGTAPVLQVNDDYYERVTRPRCQALLEALRGGE----QPEPQRERG 177

Query: 189 ------ISSAPAG 195
                  ++ P G
Sbjct: 178 GDSVGPEAAEPFG 190


>gi|239616588|ref|YP_002939910.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505419|gb|ACR78906.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 164

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+    +NE I +         +I +L +AQE  G++S    + VA+ L +   +V  + 
Sbjct: 10  EKLYTQLNEYIDQVKEE--PGVLINVLHKAQELFGYLSEELQQHVADKLGVPLSQVHGVV 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  V++C  T C +RG ++++E  + ++        SDG  S   V 
Sbjct: 68  TFYNFFTTKPKG-KHQVKICLGTACYVRGADRILERFKEELGVDLDEPTSDGLFSLHGVR 126

Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQ 176
           C GAC  AP+V++G+ D Y  +TP+ +  II  +   +
Sbjct: 127 CLGACSMAPVVLVGERDFYGKVTPDEVSAIIKKYRGEK 164


>gi|121998540|ref|YP_001003327.1| NADH-quinone oxidoreductase subunit E [Halorhodospira halophila
           SL1]
 gi|121589945|gb|ABM62525.1| NADH dehydrogenase subunit E [Halorhodospira halophila SL1]
          Length = 170

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
            + +    ++  +++YP       SA+IP L   Q+  G W+ R+ +   A+ + M    
Sbjct: 11  LNADQRRRIDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRAS 70

Query: 75  VLEIATFYTQFQL-SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
             E+ATFY+ F L  PVG R  V  C    C L G ++L+     K+  +      DG +
Sbjct: 71  AFEVATFYSMFHLDEPVG-RHKVNFCTNISCCLNGADELVAYAEEKLGIRLGETTPDGRI 129

Query: 134 SWEE-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +     EC  AC  APM+++    Y  LT ER++EI+D  S
Sbjct: 130 TLVREEECLAACTRAPMMVVDGHYYTHLTRERIDEILDGLS 170


>gi|212712279|ref|ZP_03320407.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
           30120]
 gi|212685025|gb|EEB44553.1| hypothetical protein PROVALCAL_03365 [Providencia alcalifaciens DSM
           30120]
          Length = 179

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E      F  +E     +      Y  +R  +A I  L   Q+  GWV   AI  +A++L
Sbjct: 18  EPQVNHGFVLTEHERAEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADVL 75

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + L      +++ +P    
Sbjct: 76  GIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTT 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +DG  +     C G C   P +MI +DT+  + PE ++++++ +
Sbjct: 135 ADGRFTLLPTCCLGNCDKGPTMMIDEDTHSYVQPENIQKLLEQY 178


>gi|150021054|ref|YP_001306408.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149793575|gb|ABR31023.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 160

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 23  AIWVNEVISRYPPSR--CQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78
              + ++IS     R   +  +I  L + Q+  +  ++S  A ++V+  L++   +V E+
Sbjct: 2   LSKIKDIISEAKNERLEEKDILIYTLHKIQDISENNFISEEAAKIVSEELNIPLSKVYEV 61

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY+ F     G +  ++VC + PC +    ++I++ + ++        +DG  + EE 
Sbjct: 62  LTFYSMFSTKKRG-KYLIRVCSSLPCHVANGREIIKILKEELKIDFNQTTADGMFTLEET 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            C G C  +P++MI    Y DLTPE+++E+I+    G+
Sbjct: 121 GCLGLCGVSPVIMINNKYYGDLTPEKVKELINKIKRGE 158


>gi|187477545|ref|YP_785569.1| NADH dehydrogenase subunit E [Bordetella avium 197N]
 gi|115422131|emb|CAJ48655.1| NADH dehydrogenase I chain E [Bordetella avium 197N]
          Length = 164

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              S ++   ++  ++++P  + QSA++  L  AQE++GW+S   IE VA  + +A I V
Sbjct: 1   MLLSAQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLSAEIIEDVAKYIGVAPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVG    + VC   PC LR  EK  E  + K+        +DG  + 
Sbjct: 61  QEVATFYNMFDVKPVGV-HKIAVCTNLPCALRDGEKAGEYLKRKLGVGYRETTADGKFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFST 174
            E EC GAC +AP++++        ++ ++L+ ++D   +
Sbjct: 120 IEGECMGACGDAPVLIVNNKHMCVRMSEQKLDALVDGLKS 159


>gi|53804299|ref|YP_113851.1| formate dehydrogenase subunit gamma [Methylococcus capsulatus str.
           Bath]
 gi|53758060|gb|AAU92351.1| formate dehydrogenase, gamma subunit [Methylococcus capsulatus str.
           Bath]
          Length = 159

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E     V EVI +        A++P+L   Q++ G++   A+  +A  L+++   V  +
Sbjct: 4   TEWDRDAVTEVIEQ--KKSMPGALLPILHGIQDRIGFIPEDAVPQIAKALNLSRAEVHGV 61

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+ +  G +  + +C    C     E L    + ++        +DG  S E V
Sbjct: 62  ISFYHYFRTTAPG-KHTIHLCRAESCQAMNSESLETHVKARLGIDYHETTADGAFSLEPV 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C G C  +P +MI  + Y  ++P+  + IID    
Sbjct: 121 YCLGNCACSPSMMIDHEVYGHVSPQSFDAIIDELKE 156


>gi|320354224|ref|YP_004195563.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
 gi|320122726|gb|ADW18272.1| NADH dehydrogenase subunit E [Desulfobulbus propionicus DSM 2032]
          Length = 152

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++ Y   R +  +IPLL   Q++  ++S  A++ VA+ L+++   V  +ATFY QF
Sbjct: 8   LENILTAY--GRERDNLIPLLQEVQDRFRYLSPEAVQAVADHLELSANDVYGVATFYAQF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P G    ++VC  T C +RG ++++E         P   +S+G  S E V C G+C 
Sbjct: 66  RFVPPGLHH-IKVCEGTACHVRGSDRILESISRATGIAPGQTSSNGQFSLERVACFGSCA 124

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            AP+V++    Y  +T  +  ++I+ 
Sbjct: 125 LAPVVVVDDKVYGRMTAAKTNKLIED 150


>gi|239627949|ref|ZP_04670980.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518095|gb|EEQ57961.1| NADH-quinone oxidoreductase [Clostridiales bacterium 1_7_47FAA]
          Length = 171

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     + E+ + Y     + ++I +L  AQ   G++     +V+A+ L++    V  + 
Sbjct: 15  EALLKRIGELAAEY--RGREGSLIQVLHMAQGIYGYLPLEVQKVIADALEVPLAEVSGVV 72

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F   P G    ++VC  T C +RG +K++E  +  +  +     +D   ++E   
Sbjct: 73  TFYSFFSTQPRGE-HTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTADRKFTFEVAR 131

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           C GAC  AP + I    Y+ + P++LE+I++ +   +G 
Sbjct: 132 CIGACGLAPAMSIDDQVYKQVNPDKLEQILERYYEEEGQ 170


>gi|29345533|ref|NP_809036.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571680|ref|ZP_04849086.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337425|gb|AAO75230.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838888|gb|EES66973.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 158

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  +  ++        +I +L  AQ   G++      ++A+ L +   +V  + TFYT
Sbjct: 12  EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C GA
Sbjct: 70  FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP+VMIG+  Y  L P  +++II+  
Sbjct: 129 CGLAPVVMIGEKVYGRLQPVDVKKIIEEL 157


>gi|302523881|ref|ZP_07276223.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
 gi|302432776|gb|EFL04592.1| NADH-quinone oxidoreductase [Streptomyces sp. AA4]
          Length = 287

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P++  F  ++     E+I+RYP SR  SA++P+L   Q  +G+VS+  I   A  LD+  
Sbjct: 46  PAADVFDADTHREAKEIIARYPMSR--SALLPMLHLVQSVQGYVSQEGIAFCARHLDLTD 103

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH---------QK 123
             V  +ATFYT ++  P G    V VC  T C   G + +    +  +          + 
Sbjct: 104 AEVTAVATFYTMYKRRPCGE-HLVSVCTNTLCAALGGDDIYRKLQTHLGSAEKPLGHEET 162

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                  G+++ E  EC  AC   P++ +  + +++ TPE+   ++DA   G+      G
Sbjct: 163 AGTPGEPGSITLEHAECLAACDLGPVLQVNYEYFDNQTPEQAVALVDALQAGKKPAPTRG 222


>gi|255525708|ref|ZP_05392640.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296184812|ref|ZP_06853223.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255510610|gb|EET86918.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296050594|gb|EFG90017.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 166

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               +++V  +Y   +    ++ +L  AQ+  G++    ++ +A+       +V  +ATF
Sbjct: 10  DLSLMDKVFDKY--YKGNGNIVSMLQDAQDIYGYLPLDVLKAIADKTGNKRTKVYGVATF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+QF+L+P G +  +  C  T C +   E +     +++   P   +SDG  S+E V C 
Sbjct: 68  YSQFRLNPRG-KYMILQCQGTACHVNNSEVIGNAICDELGINPGETSSDGMFSFEHVACL 126

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII-DAFSTGQGDTI 180
           G C  AP++MI  + Y +LTP+++ +II D ++  + + I
Sbjct: 127 GCCSLAPVIMINGEAYGNLTPDKVRKIIRDIYAREKEEAI 166


>gi|332526751|ref|ZP_08402853.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332111154|gb|EGJ11186.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 161

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +FSE +       ++++P  + QSAV+  L   Q ++G VS+ A E +A  L M  I V
Sbjct: 1   MNFSEATLARFAREVAKFPADQKQSAVMACLAIVQHEQGHVSQEAEEAIAAYLGMPAIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  +    VG +  + VC   PC LR  E  ++    K+  +P     DG  + 
Sbjct: 61  HEVTTFYNMYNQRRVG-KYKLNVCTNLPCQLRHGEHALDHVCKKLGVEPYGTTEDGLFTV 119

Query: 136 EEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
           +  EC GAC +AP++++   +    ++ ERL+E+I+    
Sbjct: 120 QPSECLGACADAPVMLVNDREMLSFMSDERLDELIETLRK 159


>gi|226306210|ref|YP_002766170.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
 gi|226185327|dbj|BAH33431.1| NADH-quinone oxidoreductase chain E [Rhodococcus erythropolis PR4]
          Length = 274

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRC-----QSAVIPLLMRAQEQEGWVS 57
           VR  A   + P   +           VI+RY          +SA++PLL   Q ++G+++
Sbjct: 25  VRPGARSSYPPDVLA---RLDADAETVIARYREPDSAATTSRSALLPLLHLVQSEDGYIT 81

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
            A I+  +  L +    V  ++TFY+ ++  P G    V VC  T C + G + ++    
Sbjct: 82  PAGIDFCSAKLGLTGAEVAAVSTFYSMYRRGPTGE-YLVGVCTNTLCAIMGGDDILAALE 140

Query: 118 NKIHQ-----KPLHR--NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             +       +  H    SDG ++ E +EC  AC  AP++MI  + +++ TPE    ++D
Sbjct: 141 EHLGSTGSRDEGGHSISTSDGKITLEHIECNAACDYAPVMMINWEFFDNQTPESARSLVD 200

Query: 171 AFSTGQGDTIRPG 183
           A   G+  T   G
Sbjct: 201 ALRAGERVTPDRG 213


>gi|226227064|ref|YP_002761170.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
 gi|226090255|dbj|BAH38700.1| NADH-quinone oxidoreductase chain E [Gemmatimonas aurantiaca T-27]
          Length = 155

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
            +   ++++++RYP    Q+A++P L   Q+  GWVS A +E VA  L++    V  + T
Sbjct: 5   AARAELDKILARYP--HKQAALLPALWMLQDARGWVSEAGMEEVAAALEITPAYVKGVVT 62

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVE 139
           FYT +   PVGT   +QVC TTPC + G E +++        +     + DG  +  EVE
Sbjct: 63  FYTMYHQHPVGT-YFIQVCTTTPCNVCGAEDVVKAFLEHTGCEDLGLTSPDGKYTVIEVE 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  A  V I  D  E +TPE +  I+    
Sbjct: 122 CLGACGFATPVQINNDYVESVTPESVPRILSELK 155


>gi|225405664|ref|ZP_03760853.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
           DSM 15981]
 gi|225042809|gb|EEG53055.1| hypothetical protein CLOSTASPAR_04885 [Clostridium asparagiforme
           DSM 15981]
          Length = 170

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
                 + E+ + Y     + ++I +L  AQ   G++     +V+A+ LD+    V  + 
Sbjct: 17  AALLARIGELAAEY--RGKEGSLIQVLHMAQGIYGYLPIEVQKVIADTLDIPLAEVAGVV 74

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+ F   P G R  ++VC  T C +RG +K++E  +  +  +      D   ++E   
Sbjct: 75  TFYSFFSTQPRG-RHTIRVCLGTACYVRGGKKIVERIKELLDVEIGETTKDRLFTFEVAR 133

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP + I    Y+ + P++LE+I+  +
Sbjct: 134 CIGACGLAPAMSIDDQVYKQVNPDKLEQILKRY 166


>gi|171463530|ref|YP_001797643.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193068|gb|ACB44029.1| NADH-quinone oxidoreductase, E subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 167

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++   S+++   ++  I++YPP   QSAV+  L+ AQ + GWVS   IE VA IL+M  I
Sbjct: 3   TTLQLSDKTMADIHRNIAKYPPEHKQSAVMACLIAAQIEVGWVSPEVIETVAQILEMPSI 62

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V E+ATFY  +   P+G +  + +C   PC L   E      +  +          GT 
Sbjct: 63  AVDEVATFYNMYNTKPIG-KYKLVICTNLPCQLTHGET-AAYLKETLGIDYNETTPCGTF 120

Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
           + +E EC GAC ++P++++        ++ E+++ +++    
Sbjct: 121 TLKEGECMGACGDSPVMLVNDKRMCSFMSKEKIDALLNELRA 162


>gi|302336897|ref|YP_003802103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634082|gb|ADK79509.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 169

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
            ++  Y   R    +IP+L + QE+  ++    +  +A  L+++  R+  IATFY+ F L
Sbjct: 19  RILDLY--DRDPGMIIPILQKVQEEYRYLPEEVLLFLATSLEISPARLYGIATFYSHFSL 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVN 146
            P G +  ++VC  T C ++G   LIE  R+ +  +      SD   + E V C GAC  
Sbjct: 77  EPKG-KHVIKVCDGTACHVKGSGALIETLRSMLALEKGIKTTSDMLFTLETVSCLGACGL 135

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           AP+V+I    +  +TP+++  +I      +
Sbjct: 136 APVVVIDDTVHGQMTPDKVRALITKIREEE 165


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    +N++IS+Y  S     +I +L +AQE  G++    +  +A+ + +    V  +
Sbjct: 6   SMERLDDLNKIISQYKDS--PGQLIRILQKAQELYGYLPEDILGYIADKVGLPLSEVAGV 63

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY+ F   P G +  + VC  T C ++G   ++E  + ++        +DG  +    
Sbjct: 64  VTFYSLFTTKPKG-KHTISVCLGTACYVKGAPNVLEAIKKELAVDMDQTTADGLFTLTNT 122

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP V+I  + +  +    + E+I  + 
Sbjct: 123 RCVGACGLAPAVLIDGEVHGRVKASDVPELIRQYR 157



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  T C      ++    R ++  +    + DG ++     C G C   P++++
Sbjct: 247 RHQILVCAGTGCTSSRSAEIQSTLRRELQAQ----SLDGEIAVVHTGCFGFCELGPILVV 302

Query: 153 GKD--TYEDLTPERLEEIIDA 171
             +   Y  +TP  + EI++ 
Sbjct: 303 HPERVFYCQVTPNDVPEIVER 323


>gi|332968231|gb|EGK07308.1| NADH-quinone oxidoreductase subunit E [Kingella kingae ATCC 23330]
          Length = 157

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SAV+  L  AQ ++G+++   IE VA  + +  I   E
Sbjct: 2   LSADSLKQIDTELAKYPADQRRSAVMGALRIAQVEKGYLAPETIEFVAQYIGIPAIAAHE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+        +DG  +  E
Sbjct: 62  VATFYNMYDLKPVG-KYKLTVCTNLPCALRGGVDAGEYLKQKLGIGYGETTADGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +  + +E+ +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDADAIEKKLAEL 156


>gi|319794664|ref|YP_004156304.1| NADH-quinone oxidoreductase, e subunit [Variovorax paradoxus EPS]
 gi|315597127|gb|ADU38193.1| NADH-quinone oxidoreductase, E subunit [Variovorax paradoxus EPS]
          Length = 180

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+       +  P++     E        +++YP +  QSAV+  L   Q+ EG++S   
Sbjct: 1   MTTSSTHHHDAAPAAP-LKAEILERFAREVAKYPEAGKQSAVMACLAIVQQDEGYISMQR 59

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
              +A+ L MA I V E+ TFY  +   PVG +  + VC   PC LR     +     K+
Sbjct: 60  EREIADYLGMAPIAVHEVTTFYNMYNQHPVG-KFKLNVCTNLPCQLRDGVTALVHLEKKL 118

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST-GQGD 178
             K      DG  + ++ EC GAC ++P++++   T    ++ E+L+++I+      +G+
Sbjct: 119 GIKMGETTGDGLFTLQQSECLGACADSPVMLVNDRTMCSFMSNEKLDQLIEGLRASTKGE 178

Query: 179 T 179
           T
Sbjct: 179 T 179


>gi|293603923|ref|ZP_06686338.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
 gi|292817760|gb|EFF76826.1| NADH-quinone oxidoreductase subunit E [Achromobacter piechaudii
           ATCC 43553]
          Length = 164

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V
Sbjct: 1   MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATETIEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVG +  + VC   PC LR  ++  E  + K+        +DG  + 
Sbjct: 61  QEVATFYNMFDVKPVG-KNKIAVCTNLPCALRDGDRAGEYLKRKLGVDYRQTTADGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173
            E EC GAC ++P++++        +T E+L+ ++ A  
Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTDEKLDALVAALK 158


>gi|284106849|ref|ZP_06386292.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830028|gb|EFC34304.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 155

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 1/143 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++PLL  AQ +EG+VS+AAI  +A ILD+   +V E ATFYT   L P+G + H+QVC +
Sbjct: 1   MLPLLNLAQREEGYVSQAAIREIAGILDLTPPQVFETATFYTMLNLKPIG-KFHIQVCRS 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C L G + LIE  R  +         D   +   VEC G+C   PM+ I  D YE LT
Sbjct: 60  LMCALVGADPLIEWLRTHLGIGVGQTTDDKLFTLSAVECLGSCGTGPMMQINDDYYERLT 119

Query: 162 PERLEEIIDAFSTGQGDTIRPGP 184
            E++  I+          ++ GP
Sbjct: 120 EEKVGLIVRDLRETGDSAMKSGP 142


>gi|217077620|ref|YP_002335338.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
 gi|217037475|gb|ACJ75997.1| Fe-hydrogenase gamma subunit [Thermosipho africanus TCF52B]
          Length = 163

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    ++  I        +  +I +L +AQE  GW+ +   + VA  L++    V  + T
Sbjct: 10  ELYKELDAYIEELKG--KKGILINVLHKAQELFGWLPQEVQDHVAKKLNIPSSVVYGVVT 67

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F   P G +  +++C  T C ++G ++++E   N++  +      DG  S   V C
Sbjct: 68  FYNFFSTKPKG-KNQIKICLGTACYVKGADRVMERFLNELGVEESEVTKDGKFSVHGVRC 126

Query: 141 QGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQG 177
            GAC  AP+V++G+ D Y  +TP+ +  II  +  G+G
Sbjct: 127 LGACSMAPVVLVGEKDFYGKVTPDMVPGIIKKYK-GEG 163


>gi|326402926|ref|YP_004283007.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
 gi|325049787|dbj|BAJ80125.1| NADH-quinone oxidoreductase subunit E [Acidiphilium multivorum
           AIU301]
          Length = 165

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 24  IWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
             + E I+ +       ++A I  L   Q++ G VS   +  VA +L M    +  +ATF
Sbjct: 15  AALRETIATFLRESETPRAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATF 74

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y      PVG R  + +C +  C + G      + R ++  +P     DG  +   + C 
Sbjct: 75  YNLIFRRPVG-RHVILLCDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCL 133

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C  AP +MIG D + +LTPER++ I++ + 
Sbjct: 134 GCCDRAPAMMIGDDLHGNLTPERIDAILEQYR 165


>gi|302879337|ref|YP_003847901.1| NADH-quinone oxidoreductase, E subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582126|gb|ADL56137.1| NADH-quinone oxidoreductase, E subunit [Gallionella
           capsiferriformans ES-2]
          Length = 159

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S      +N  + +YP  + QSAV+  L   Q+++GW++   +  +A  L M  + V E
Sbjct: 2   LSANIQEQINRELKKYPVDQKQSAVMSALRFVQDEKGWIATEDMADIAAFLGMPQMAVYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L P+G +  + VC    C L G    +    +K+        +DG     E
Sbjct: 62  VATFYHMYNLKPMG-KTTLTVCTNLSCTLCGSADTVAYLTSKLGIGFGEVTADGKYGMRE 120

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            EC GAC +AP++ I        LTP ++++I+   
Sbjct: 121 GECMGACKDAPLMTINNKKLCGRLTPAKIDQILAEL 156


>gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
           6192]
 gi|306532049|gb|ADN01583.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM
           6192]
          Length = 164

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80
              ++     YPP R    ++ +L   Q+     ++    +E VA  LD+    +  I +
Sbjct: 1   MAHIDRPWKAYPPRR--DNLLLILHDIQDHNPRNYLPDDEVEEVARYLDIPVSELDGIIS 58

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+ F   P G R  +++C +  C L G   L    +  +  K      DG  + E V C
Sbjct: 59  FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            G C   P +M+  + +  +T E+L+ +I+  +  +G    P
Sbjct: 118 LGCCDKGPSLMVNDELHTRMTREKLDLLIEELARREGVAYEP 159


>gi|150391801|ref|YP_001321850.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951663|gb|ABR50191.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 160

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +EE    +  VI        +  ++P+L  AQ+  G++     + ++  +++    +  
Sbjct: 6   LTEEKFQRLQMVIE--EQKGKKGPLMPVLHEAQKIFGYIPLEVQKRISEEIEIPLSEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY+QF L P G    + VC  T C ++G + +I+        KP   + DG  S   
Sbjct: 64  VITFYSQFSLEPKGD-YVIGVCMGTACYVKGSQPIIDKISELTGTKPGGNSEDGRFSLVA 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             C GAC  AP++ + +D Y  L  E +  I++ + 
Sbjct: 123 TRCIGACGLAPVLTVNEDVYGRLKLEDIPGIVEKYQ 158


>gi|83590555|ref|YP_430564.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|83573469|gb|ABC20021.1| NADH dehydrogenase subunit E [Moorella thermoacetica ATCC 39073]
          Length = 157

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     + ++I  +      SA+I +L ++QE  G++ R     +A+ L ++  +V  + 
Sbjct: 7   EAKWEELEKIIDAH--RGQPSALIEVLHQSQELVGYLPRNVQVAIADGLGLSLSQVYSVV 64

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F   P G +  V VC  T C ++G   ++E    ++  K     +DG  +  +V 
Sbjct: 65  SFYNHFTTKPKG-KYQVSVCMGTACFVKGAPAILERLEQELGTKVGDTTADGRFTINQVR 123

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C G C   P++ + +  +  LTP+   EI+  + 
Sbjct: 124 CLGCCALGPVMTVNQKAHGRLTPDTALEILKEYQ 157


>gi|150021057|ref|YP_001306411.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
 gi|149793578|gb|ABR31026.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Thermosipho
           melanesiensis BI429]
          Length = 163

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    ++  I        +  +I +L +AQE  GW+ +     VA  L +    V  + T
Sbjct: 9   ELYKELDAYIESLKG--KKGILINVLHKAQELFGWLPKEVQTHVAEKLKIPPSVVYGVIT 66

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F   P G +  +++C  T C ++G ++++E   N+++ K      DG  S   V C
Sbjct: 67  FYNFFSTKPKG-KHQIKICLGTACYVKGADRVMERFLNELNVKEGEVTKDGNFSVHGVRC 125

Query: 141 QGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGD 178
            GAC  AP+V++G+ + +  +TP+ +  II  F  G+G 
Sbjct: 126 LGACSMAPVVLVGEKEFFGKVTPDMVPGIIKKFQ-GEGK 163


>gi|311104662|ref|YP_003977515.1| NADH-quinone oxidoreductase subunit E [Achromobacter xylosoxidans
           A8]
 gi|310759351|gb|ADP14800.1| NADH-quinone oxidoreductase, E subunit [Achromobacter xylosoxidans
           A8]
          Length = 164

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              SE++   ++  ++++P  + QSA++  L  AQE++GW++   IE VAN + +  I V
Sbjct: 1   MLLSEQAYQKIDRELAKFPADQRQSAIMASLAIAQEEKGWLATEIIEDVANYIGVPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  F + PVG +  + VC   PC LR  E+  +  + K+         DG  + 
Sbjct: 61  QEVATFYNMFDVKPVG-KNKIAVCTNLPCALRDGERAGDYLKRKLGVDYRGTTPDGQFTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYE-DLTPERLEEIIDAFS 173
            E EC GAC ++P++++        +T E+L+ ++ A  
Sbjct: 120 VEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVAALK 158


>gi|331699308|ref|YP_004335547.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326953997|gb|AEA27694.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 273

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 12/178 (6%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S S+ E +     E+I+RYP SR  SA++P+L   Q  EG VS+  I   A +LD+    
Sbjct: 34  SPSYDEVTRQRAKEIIARYPQSR--SALLPMLHLVQSVEGHVSQEGIRFCAELLDLTTAE 91

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK---------PL 125
           V  +ATFYT ++ +P G    V VC  T C   G + +    + ++  +           
Sbjct: 92  VSAVATFYTMYKRTPCGE-HLVSVCTNTLCAALGGDDIYARLQARLGTEDRPLGHEETAG 150

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
              + G+++ E  EC  AC  AP++ +  + +++ T E  EE++DA   G+      G
Sbjct: 151 EPGTPGSITLEHAECLAACDLAPVIQVNYEYFDNQTVESAEELVDALRRGEKPHPTRG 208


>gi|294788077|ref|ZP_06753321.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484370|gb|EFG32053.1| NADH dehydrogenase (ubiquinone), E subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 157

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S +S   ++  +++YP  + +SA++  L  AQ ++G+++   IE VA  + +  I   E
Sbjct: 2   LSAQSLKEIDIELAKYPADQRRSAIMGALRIAQVEKGYLAAETIEFVAQYVGIPAIAAYE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY  + L PVG +  + VC   PC LRG     E  + K+         DG  +  E
Sbjct: 62  VATFYNMYDLQPVG-KYKLTVCTNLPCALRGGVDAGEYLKEKLGIGYGETTPDGKFTLVE 120

Query: 138 VECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
            EC GAC +AP++++        +    +++ +   
Sbjct: 121 GECMGACGDAPVMLLNNHKMCSFMDAAAIDKKLAEL 156


>gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 570

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 16  FSFSEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
              +E+  +   ++ V+ +Y   R +SA++P+L   QE+ G+VS  A++ VA++L +   
Sbjct: 1   MLLTEQEKLREFISTVVGKY--DRQRSALLPILRVIQEEYGYVSELAMQYVADLLGIHAA 58

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V  +ATFY      P G +  +++      +++G   +       +  +      DG  
Sbjct: 59  KVYGVATFYHFINTEPKG-KFIIRLSRDISSIMKGANDIARQLETVLGIRFGETTPDGLF 117

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           + +   C G    AP +MI  + + +LTP  + +II    T +  + RP
Sbjct: 118 TLQWTSCIGMDDQAPAMMINSEVFSNLTPLLIPQIIRQC-TEKFYSHRP 165


>gi|325003720|ref|ZP_08124832.1| NADH dehydrogenase subunit E [Pseudonocardia sp. P1]
          Length = 276

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A  E  P S +F E +     E I++YP  R  SA++PLL   Q  EG+VS+  I   A 
Sbjct: 25  APPEPSPVSPTFDELTRARTKETIAQYPEPR--SALLPLLHLVQSVEGYVSQDGIRYCAE 82

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-- 124
            L++    V  +ATFYT ++ SP G    V VC  T C   G + +    +  +  +   
Sbjct: 83  ALELTTAEVSAVATFYTMYKRSPCGE-HLVSVCTNTLCAALGGDDIYARLQTHLGSEDRP 141

Query: 125 -------LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
                      + G+++ E  EC  AC  AP++ +  + +++ + E   E++DA   G+ 
Sbjct: 142 LGHEETVGEPGTTGSITLEHAECLAACDLAPVLQVDYEYFDNQSVESAVELVDALRRGER 201

Query: 178 DTIRPG 183
                G
Sbjct: 202 PQPTRG 207


>gi|39995451|ref|NP_951402.1| NADH dehydrogenase I subunit E [Geobacter sulfurreducens PCA]
 gi|39982214|gb|AAR33675.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
 gi|298504450|gb|ADI83173.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
          Length = 173

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 10  EFQPSSFSFSEE------SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
              P+  + +EE           N VI +Y        ++P+L   Q++ G+V R  I++
Sbjct: 2   SNAPAEATTTEEVPVEEIDLGPANHVIDKYLT--LPGNLMPVLQGIQDEYGYVPRPTIDL 59

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA  L++   ++  + TFY QF L P G R  ++VC  T C ++G  ++++    K+   
Sbjct: 60  VAERLNVYPSQIFGVLTFYAQFHLKPRG-RFIIRVCVGTACHVQGAPRIVDTFFEKLGIG 118

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                 D   ++E+V C GAC  AP+ M+  DT+  +T +++EEII  ++
Sbjct: 119 HAETTPDLRYTFEKVACLGACGMAPLAMVNDDTFGKMTVQKVEEIIAEYN 168


>gi|13474500|ref|NP_106069.1| formate dehydrogenase subunit gamma [Mesorhizobium loti MAFF303099]
 gi|14025254|dbj|BAB51855.1| NAD-dependent formate dehydrogenase gamma subunit [Mesorhizobium
           loti MAFF303099]
          Length = 159

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 7/165 (4%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             QP+S   +  +A  + E+         +  ++P+L   Q++ G V +AA+ V+A+ L+
Sbjct: 2   TMQPASTEIASRTAAIIQEL------KGLEGPLLPILHEIQDEFGHVPQAALPVIADGLN 55

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           ++   V  + TFY  F+  P G R  +++C    C   G + +    +  +         
Sbjct: 56  LSRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKIKQLLGIGFHETTR 114

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           DG+++ E V C G C  +P  M+  +    L  ++++EI+    +
Sbjct: 115 DGSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEILAEVRS 159


>gi|328950035|ref|YP_004367370.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450359|gb|AEB11260.1| NADH-quinone oxidoreductase, E subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 200

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 2/162 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV  +YPP   +SA++PLL R Q +EG+VS A I  +A ++      V
Sbjct: 1   MGFFDDKQDWLEEVFRQYPPEGRRSAIMPLLRRVQTEEGYVSEARIREIAELVGTTPTEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +   P G + H+QVC T  C L G ++L +     +   P     DG  S 
Sbjct: 61  KGVMSFYSYYHELPTG-KYHLQVCATLSCALAGADELWDYLVETLGILPGEVTPDGRFSI 119

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP+V +  + Y E +T  RL+ +++     +
Sbjct: 120 QKVECLGSCHTAPVVQVNDEPYVECVTRARLKALLEGLKADR 161


>gi|297565710|ref|YP_003684682.1| NADH-quinone oxidoreductase subunit E [Meiothermus silvanus DSM
           9946]
 gi|296850159|gb|ADH63174.1| NADH-quinone oxidoreductase, E subunit [Meiothermus silvanus DSM
           9946]
          Length = 183

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+ EV S+YP  R  +A++PLL R Q+ EGW+S    E +A+I+      V
Sbjct: 1   MGFFDDKQEWLAEVFSQYPERR--AALMPLLRRVQQDEGWISPERQEEIAHIVGTTATEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FYT FQ  P G + H+QVC T  C + G ++L +     +   P    +DG  S 
Sbjct: 59  AGVMSFYTYFQSLPTG-KHHIQVCATLSCAIGGADELWDELVQTLGILPGEVTADGLFSI 117

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP+V I  + Y E +T  RL+ ++     G+
Sbjct: 118 QKVECLGSCHTAPVVQINDEPYVECVTKARLQALLQGLREGK 159


>gi|323703025|ref|ZP_08114681.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532038|gb|EGB21921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 176

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P S   S E+   +++++++Y   +   A I +L + Q   G++ ++ +E ++ +     
Sbjct: 4   PDSLKLSAENFDAIDQIVNKYNSDK--GAAIMILQQVQATYGYIGQSMLERISQLTGTPT 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  I TFY+QF+L P+G    +QVC  T C L G E++ E  ++    KP H + DG 
Sbjct: 62  SELFSIVTFYSQFRLEPLGENF-IQVCHGTACHLAGAERISEAVQHVTKAKPGHTSPDGK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            + E V C G C + P++ +  +T+  +TP+++++++      +G     G
Sbjct: 121 FTLEHVACLGCCSHGPIMTLNNETFARMTPDKVKKMLHQKVADKGFVNSEG 171


>gi|225175929|ref|ZP_03729921.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168517|gb|EEG77319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 166

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  ++ +Y        +I +L +AQ+  G++  + +  +A  LD++  ++  + TFY+Q
Sbjct: 21  KMEALMQKY--QGKPEMLITVLQQAQDIYGFLPESVLLRIAEALDLSMAKIYGVVTFYSQ 78

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G R  ++VC  T C +RG  ++++  + ++       + D   + E V C GAC
Sbjct: 79  FHLKPRG-RNVIRVCQGTACHVRGVGRIMDKIKEELGIAEGETSEDLRFTLESVACIGAC 137

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP++MI  DT+  LT +R++ I+
Sbjct: 138 GLAPVIMINNDTHGRLTADRVKLIL 162


>gi|315186944|gb|EFU20702.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Spirochaeta thermophila DSM 6578]
          Length = 160

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q    +   E   ++++   +         +I +L + QE  G++ R     +A +LD+ 
Sbjct: 3   QTVEVTLHPELMSFIDQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVLDVP 56

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY  F+L   G +  + VC  T C L+G E +++   + +   P     DG
Sbjct: 57  LAKIYGVITFYHFFKLRKPG-KHRISVCLGTACFLKGGEDILKELEDLLGVGPNTATEDG 115

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             S+E V C G C  AP++M+  + Y  +T + L  I+  +  
Sbjct: 116 LFSFEAVRCLGCCGLAPVLMVDGEVYGKVTKDDLPGILAKYRE 158


>gi|239616591|ref|YP_002939913.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505422|gb|ACR78909.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Kosmotoga olearia
           TBF 19.5.1]
          Length = 167

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 42  VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +I  L   Q+  G ++   A E + +I+ +   ++ E+ TFYT F     G +  ++VC 
Sbjct: 28  LINTLHAIQDYYGNYIPLEATEALRDIMGIPLSKIYEVLTFYTMFSTEKRG-KYIIRVCK 86

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           + PC + G EK++E  ++ +     +   DG  + EE  C G C  +P++MI  + Y +L
Sbjct: 87  SLPCHVTGGEKVVEALKDTLGIDFGNTTEDGLFTLEESSCLGLCGVSPVMMINDEAYGNL 146

Query: 161 TPERLEEIIDAFSTGQGDTIR 181
           TP+++E+II+     +    R
Sbjct: 147 TPDKVEKIINEIREKERSDAR 167


>gi|319779886|ref|YP_004139362.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317165774|gb|ADV09312.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 159

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             QP+S   +  +A  + E+         +  ++P+L   QE+ G V + A+ V+A  L+
Sbjct: 2   TMQPASTEITSRTAAIIQEM------KGLEGPLLPILHGIQEEFGHVPKDALPVIAEALN 55

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           ++   V  + +FY  ++  P G R  +++C    C   G + +    +  +         
Sbjct: 56  ISRAEVHGVVSFYHDYRSHPAG-RHVLKLCQAESCQSMGSDAIAAKLKQLLGIGFHETTR 114

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           DG+++ E V C G C  +P  M+  +    L  E+L+EI+  
Sbjct: 115 DGSVTLEPVYCLGLCACSPAAMLDGEVIGRLDDEKLDEIVAE 156


>gi|255526811|ref|ZP_05393710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296186423|ref|ZP_06854826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255509490|gb|EET85831.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296048870|gb|EFG88301.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 159

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +  ++    + + I        + ++I +L +AQ   G++S+   + VA  LD+   +V 
Sbjct: 5   NLEKQYFNELEQFIDNLEE--KKGSLISVLHKAQNLFGYLSKDVQKFVAKKLDIPVSKVN 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F   P G +  + +C  T C ++G   ++E    K+  +     SDG  + +
Sbjct: 63  GVVTFYSYFTEEPTG-KYVINICMGTACFVKGSGDVLEEFERKLDIEVGETTSDGKFTIQ 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + C GAC  AP+V +    Y   T + +++I+D +  
Sbjct: 122 VLRCVGACGLAPVVTVNDKVYGHFTKQMVDKILDEYKE 159


>gi|255527513|ref|ZP_05394381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|255508783|gb|EET85155.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
          Length = 160

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            +VI +YP  + Q   + +L   Q +  ++ R ++E +A  L+    R+  +ATFY    
Sbjct: 14  KDVIQKYP--KEQRYTLAILQDIQRKYRYIPRESLEALAEYLETPVSRLYGMATFYKALS 71

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L+P G    + VC  T C + G   +++     +  +P     D   S   V C G C  
Sbjct: 72  LTPKGE-NIITVCDGTACHVSGSMVVMDELEKILGIRPGGTTEDRKFSINTVNCIGCCAI 130

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           AP++MI +  Y +LTP+ ++EI+D +   +
Sbjct: 131 APVMMINEKFYGNLTPKMIKEILDEYRGEK 160


>gi|148260121|ref|YP_001234248.1| NADH-quinone oxidoreductase, E subunit [Acidiphilium cryptum JF-5]
 gi|146401802|gb|ABQ30329.1| NADH dehydrogenase subunit E [Acidiphilium cryptum JF-5]
          Length = 165

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++A I  L   Q++ G VS   +  VA +L M    +  +ATFY      PVG R  + +
Sbjct: 32  RAAGIDALKAVQKRHGHVSDDHLAEVAALLGMTPAELDGVATFYNLIFRRPVG-RHVILL 90

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C + G      + R ++  +P     DG  +   + C G C  AP +MIG D + 
Sbjct: 91  CDSVACWVMGATAARNLLRQRLGIEPGETTPDGRFTLLPIVCLGCCDRAPAMMIGDDLHG 150

Query: 159 DLTPERLEEIIDAFS 173
           +LTPER++ I++ + 
Sbjct: 151 NLTPERIDAILEQYR 165


>gi|253579945|ref|ZP_04857213.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848944|gb|EES76906.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
          Length = 160

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +E+I+ Y   +  +++IP++   Q    ++    +  VA  + +   +   +ATFY
Sbjct: 7   YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPEELLTYVAEQIGVTEAKAFSVATFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
             F     G +  ++VC  T C +R    ++E    K+   K      D   + E V C 
Sbjct: 65  ENFSFDAKG-KYVIKVCDGTACHVRKSIPVLEELYKKLGLSKTKKTTDDMMFTVETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP +M+ ++ Y  +TPE+ +E+ID    G+
Sbjct: 124 GACGLAPTMMVNEEVYPRMTPEKADELIDKLRGGE 158


>gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
           6192]
 gi|306532784|gb|ADN02318.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM
           6192]
          Length = 160

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q +  +   E   ++ +   +         +I +L + QE  G++ R     +A ++D+ 
Sbjct: 3   QTAEVTLHPELMAFIEQWKEK------PGNLIMVLHKTQEIYGYIPREIAMELAKVIDVP 56

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             ++  + TFY  F+L   G +  + VC  T C L+G E +++   + +   P     DG
Sbjct: 57  LAKIYGVITFYHFFKLRKPG-KHRISVCMGTACFLKGGEDILKELEDLLGVGPNTATEDG 115

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             S+E V C G C  AP+VM+  + Y  +T + L  I+  +  
Sbjct: 116 LFSFEAVRCLGCCGLAPVVMVDGEVYGKVTKDDLPGILAKYRE 158


>gi|291296252|ref|YP_003507650.1| NADH-quinone oxidoreductase E subunit [Meiothermus ruber DSM 1279]
 gi|290471211|gb|ADD28630.1| NADH-quinone oxidoreductase, E subunit [Meiothermus ruber DSM 1279]
          Length = 188

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F ++   W+NEV ++YP  R  +A++P+L R Q+ EGW+S    E +A IL +    V
Sbjct: 6   MGFFDDKQDWLNEVFAQYPDRR--AALMPMLRRVQQDEGWISPERQEEIARILGITATEV 63

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY+ +Q  P G + H+QVC T  C + G ++L +     +         DG  S 
Sbjct: 64  AGVMSFYSYYQALPTG-KYHLQVCATLSCAIGGADELWDELVETLGILRGEVTPDGLFSI 122

Query: 136 EEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           ++VEC G+C  AP++ +  + Y E +T  RL  ++     G+
Sbjct: 123 QKVECLGSCHTAPVIQVNDEPYVECVTKARLHALLQGLREGK 164


>gi|300853891|ref|YP_003778875.1| NADH dehydrogenase I subunit E [Clostridium ljungdahlii DSM 13528]
 gi|300434006|gb|ADK13773.1| NADH dehydrogenase I, E subunit [Clostridium ljungdahlii DSM 13528]
          Length = 161

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            +VI +YP  + Q   + +L   Q +  ++ R A+E +A  LD    R+  +ATFY    
Sbjct: 13  QDVIEKYP--KEQRFTLAILQDIQRKYKYIPREALENLAKYLDTPVSRLYGMATFYKALS 70

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L+P G    + VC  T C + G   +++     I  KP     D   S   V C G C  
Sbjct: 71  LTPKGE-NIITVCDGTACHVAGSMVVMDELEKAIGIKPGETTEDLKFSINTVNCIGCCAI 129

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
           AP++MI    Y +LTP+ +EEI+  + +
Sbjct: 130 APVMMINDKYYGNLTPKLVEEILSEYRS 157


>gi|256380661|ref|YP_003104321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
           DSM 43827]
 gi|255924964|gb|ACU40475.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Actinosynnema mirum
           DSM 43827]
          Length = 254

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P +  F + +      +I+RYP  R  SA++P+L   Q  EG VS A I   A++LD++ 
Sbjct: 15  PGAVVFDQGTTDRARAIIARYPVPR--SALLPMLHLVQSVEGHVSTAGIAFCADLLDLSA 72

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------- 124
             V  +ATFYT ++  P G    V VC  T C   G + +    R+ +            
Sbjct: 73  AEVSAVATFYTMYKRKPCGE-HLVSVCTNTLCAALGGDDIYAKLRDHLGADGKPLGHEET 131

Query: 125 -LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                + G+++ E  EC  AC  AP+V +  + +++ TP+   E++ +   G+      G
Sbjct: 132 SGEPGAPGSVTLEHAECLAACDLAPVVQVNYEYFDNQTPDGALEMVKSLQAGEKPHPTRG 191

Query: 184 -PQIDRISSA 192
            P  D   + 
Sbjct: 192 APLTDFRQAE 201


>gi|325660924|ref|ZP_08149551.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085361|ref|ZP_08334447.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472431|gb|EGC75642.1| hypothetical protein HMPREF0490_00283 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408144|gb|EGG87634.1| hypothetical protein HMPREF0987_00750 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 163

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
                 F  ++E    + EVI +      Q A++ +L +AQE  G+V      ++++ +D
Sbjct: 3   NKSTVPFQGTKEQETVLREVIEKRKSE--QGALMAVLQQAQEIYGYVPTEVQTIISDEMD 60

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +   ++ E+  FY QF LSP G +  V +C  T C ++G   +       +        +
Sbjct: 61  IPLHKIEEVVDFYPQFTLSPKG-KYQVSICLGTACFVKGAGDVYNKLTEVLGIGGGECTA 119

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           DG  S +   C GAC  AP++M+  D Y  +  E +EEI+  +
Sbjct: 120 DGKFSLDASRCIGACGMAPILMVNDDVYNHVKAEDVEEILAKY 162


>gi|78224541|ref|YP_386288.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78195796|gb|ABB33563.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
          Length = 173

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
            N VI +Y        ++P+L   Q++ G+V +  I++VA  L++   ++  + TFY QF
Sbjct: 24  ANHVIDKYLT--LPGNLMPVLQGIQDEYGYVPKPTIDLVAERLNVYPSQIFGVLTFYAQF 81

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G R  ++VC  T C ++G  +++E   +K+       + D   ++E+V C GAC 
Sbjct: 82  HLKPRG-RYIIRVCVGTACHVQGAPRIVETFFDKLGISHAETSPDLRYTFEKVACLGACG 140

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP+ M+  DT+  +T +++EEII  ++
Sbjct: 141 MAPLAMVNDDTFGKMTVQKVEEIIAEYN 168


>gi|254468730|ref|ZP_05082136.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
 gi|207087540|gb|EDZ64823.1| NADH dehydrogenase i, chain e [beta proteobacterium KB13]
          Length = 156

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +++ + +YP  + QSAVI  L   Q   GW+S+  I  VA  LDM  I VLE+ATFY
Sbjct: 6   KKLIDKELKKYPSDKKQSAVIAALAIMQNDRGWLSKEDISEVALYLDMPEIAVLEVATFY 65

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L  VG R  + +C    CMLR  + ++   + K+         DG    +E EC G
Sbjct: 66  NMFDLKSVG-RYKLSICTNISCMLRDADHIVNHLKEKLQIDFNEVTRDGKFCLKESECMG 124

Query: 143 ACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
           AC  AP++ +     +E+L  +++++++    
Sbjct: 125 ACGGAPLLTVNNQKMHENLNIDKVDQLLKELK 156


>gi|226327880|ref|ZP_03803398.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
 gi|225203584|gb|EEG85938.1| hypothetical protein PROPEN_01761 [Proteus penneri ATCC 35198]
          Length = 181

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F  +EE    + +    Y   R  +A I  L   Q+  GWV   AI  +A++L +   
Sbjct: 25  ATFVLTEEERAEIEQEKHHYEDPR--AASIEALKIVQKNRGWVEDGAIYAIADVLGIPAS 82

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C + G + +       ++  P     DG  
Sbjct: 83  DVEGVATFYSQIFRQPVG-RHIIRFCDSVVCHITGYQGIQAAIEKHLNIIPGQTTPDGRF 141

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +     C G C   P +M+  DT+  + PE +E +++ +
Sbjct: 142 TLLPTCCLGNCDKGPTMMVDDDTHSFVKPEEIETLLEQY 180


>gi|302392633|ref|YP_003828453.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
 gi|302204710|gb|ADL13388.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           iron-sulfur protein [Acetohalobium arabaticum DSM 5501]
          Length = 164

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    ++E+I +      +  +I +L +AQ+  G +SR     +A  LD+ + +V  + 
Sbjct: 14  DEKFEKLDEIIEQ--NRGQEGILINVLHQAQQIFGHLSRKIQVHIAEGLDIPFSKVYAVI 71

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY+ F     G +  ++VC  T C ++G E ++E  + ++  +P     DG  + E   
Sbjct: 72  SFYSLFSTEMRG-KYTIEVCTGTACYVKGAEDILEQFKTELEIEPGETTEDGLFTLETTR 130

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP++ +G DT+  L  +++ +++D +
Sbjct: 131 CIGACGMAPVIKVGDDTHGRLKEDQVSDLLDKY 163


>gi|282891846|ref|ZP_06300326.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498279|gb|EFB40618.1| hypothetical protein pah_c198o039 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 171

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +EE+   + E+  RYP  R  SA+IP L  AQ + G++ R     VA + D+    V  
Sbjct: 2   LTEETRKSIIELQKRYPNKR--SALIPALHLAQAEIGYLPRDIQNEVAELFDIDSNEVNA 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  F   PVG +  + VC    CMLRG + +++   ++++ +P    +DG  +   
Sbjct: 60  VVTFYDMFFDQPVG-KHLIHVCKNLSCMLRGADGVLKKICHRLNVEPHETTADGEFTVIP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            EC  AC  APMV++       ++ + +E I++      G  
Sbjct: 119 SECLAACDRAPMVLVDDKVVGPISEQDVEHILEEAKKSPGHP 160


>gi|15616777|ref|NP_239989.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681532|ref|YP_002467917.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682088|ref|YP_002468472.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471213|ref|ZP_05635212.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133961|sp|P57255|NUOE_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|25285035|pir||C84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain E [imported] -
           Buchnera sp. (strain APS)
 gi|10038840|dbj|BAB12875.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621821|gb|ACL29977.1| ATP synthase subunit E [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624375|gb|ACL30530.1| ATP synthase subunit E [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085899|gb|ADP65981.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086472|gb|ADP66553.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087053|gb|ADP67133.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 162

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F  + E    +      Y   R  S  I  L   Q++ GWVS  AI  +A IL +    
Sbjct: 7   KFKLTNEEINAIENQKKYYEDFRAIS--IEALKIVQKKRGWVSDQAIYAIAEILHINPSD 64

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V  +ATFY+Q    PVG R  ++ C +  C L G +++     N +  K      D   +
Sbjct: 65  VEGVATFYSQIFRKPVG-RNIIRYCDSVVCFLTGYKRIQIALENYLKIKIGETTKDDRFT 123

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              V C G C   P +MI +DTY  LTPE +  +++++ 
Sbjct: 124 LLPVCCLGNCDKGPTIMINEDTYSVLTPESIPSLLESYK 162


>gi|42524474|ref|NP_969854.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
 gi|39576683|emb|CAE80847.1| NADH dehydrogenase I chain E [Bdellovibrio bacteriovorus HD100]
          Length = 159

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIR 74
           F  S+     V   ++RY     +SA+IP L  AQ++  G+++   I  ++ ++D+   R
Sbjct: 4   FKLSDSGLAAVKSELARYEA--KESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           + E+  FYT F   PVG + HVQVC    C L G  ++ +   +++  K     +DG  +
Sbjct: 62  INEVFKFYTMFNQKPVG-KYHVQVCTNISCALEGGREMAKHICHELGVKFDQVTADGRFT 120

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             +VEC G+C  APM+ +    +E LTPE    ++    
Sbjct: 121 VSKVECLGSCGTAPMMQVNDSYHEKLTPETAMNLLRGMK 159


>gi|297625186|ref|YP_003706620.1| NADH-quinone oxidoreductase subunit E [Truepera radiovictrix DSM
           17093]
 gi|297166366|gb|ADI16077.1| NADH-quinone oxidoreductase, E subunit [Truepera radiovictrix DSM
           17093]
          Length = 191

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 5/171 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F  +    ++E++ RYP    +SAV+PLL   Q  E  +S A IE +A IL +    V  
Sbjct: 10  FFADKQDVLSEILGRYPEYGRRSAVMPLLWEVQRAERHISEARIEEIAEILGLHATEVKG 69

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY+ +   PVG + H+Q+C T  C L G +++ +    +        + +G  S ++
Sbjct: 70  VMSFYSTYHELPVG-KYHLQICATLSCSLAGADEMYDFISEETGLVSGETDREGLFSLQK 128

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           VEC G+C  AP++ +    YE +TP R + ++ A   G+     P P  +R
Sbjct: 129 VECLGSCGTAPVLQVNDTFYERVTPSRCKALLAALRRGE----EPAPWRER 175


>gi|77918522|ref|YP_356337.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77544605|gb|ABA88167.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 159

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F++E    V+ +I RY      S +IPLL + QE  G++  +  E ++    ++  R+ 
Sbjct: 6   EFTKEQIDEVDGLIDRYGA--HPSGLIPLLEKVQELLGYLPLSIQEYISEKTHISPNRIY 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F +     R  VQ+C  T C ++G + ++E   N           DG  ++E
Sbjct: 64  GVVTFYSFFTMEAR-ARHRVQLCLGTACYVKGADAMVEKIENDYQINFGESTEDGRFTFE 122

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  C GAC  AP+V+I  + +  +T + L+ I++ F+
Sbjct: 123 KARCVGACGLAPVVIIDGEVFGKVTVDSLDGILEQFA 159


>gi|224368768|ref|YP_002602929.1| NuoE [Desulfobacterium autotrophicum HRM2]
 gi|223691484|gb|ACN14767.1| NuoE [Desulfobacterium autotrophicum HRM2]
          Length = 164

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 3/165 (1%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANI 67
           +++  P     SE+    ++++I+         ++I +L  +QE  G++    I  +++ 
Sbjct: 2   KQKTHPLHPDISEDMWGKIDKIIAS--GKGIPGSLISVLRESQEVVGYLPSELINHISHG 59

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +   +V  +ATFY+ F L+P G R  ++VC  T C ++G ++ I         K    
Sbjct: 60  LVLPTSQVFGVATFYSFFSLTPKG-RHTIRVCTGTACYVKGIKEAIGRIHGTYGIKEGET 118

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             D   S E V C GAC  AP++++ KD Y  +T +++  I++ +
Sbjct: 119 TEDRKFSLEGVRCLGACGLAPVMIVDKDIYGQVTSDKVINILEKY 163


>gi|330830048|ref|YP_004393000.1| NADH dehydrogenase I subunit E [Aeromonas veronii B565]
 gi|328805184|gb|AEB50383.1| NADH dehydrogenase I, E subunit [Aeromonas veronii B565]
          Length = 180

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
             F  S+     +      Y   R  +A I  L   Q+  GWV   AI  +A  L +   
Sbjct: 24  DDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPAS 81

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++VC +  C + G E+L+   +  ++  P     DG  
Sbjct: 82  DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEELMAGLKEVMNLGPGQTTPDGRF 140

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   V C G C   P +MI  DTY  L P  L + ++A+
Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPVTLLKTLEAY 179


>gi|91200366|emb|CAJ73412.1| strongly similar to NADH dehydrogenase I chain E [Candidatus
           Kuenenia stuttgartiensis]
          Length = 154

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    + E +   P    ++A I  L   Q+  GWVS   ++ +A  L++    V  
Sbjct: 2   LSVEEQKDLEEELKIVP--YKKAATIEALKIVQKHRGWVSDDGVKDIAEFLEITPDEVDS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY       VG +  + VC +  C + G  ++++    K+  K     SDG  +   
Sbjct: 60  VATFYNLIFRRKVG-KHVILVCDSVSCWILGYNQILDYLNKKLGIKFGETTSDGKFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C +AP +MI  D Y DLT + L+ I++ +S
Sbjct: 119 ISCLGTCDHAPALMIDNDLYRDLTTDLLDPILEKYS 154


>gi|291285961|ref|YP_003502777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883121|gb|ADD66821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 168

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+  +Y       A IP+L + Q+  G++    +E +A+ L+M+  ++  + TFY QF 
Sbjct: 18  DEICEQYKD--WAGATIPVLQKTQDAYGFLFPELVERIADNLNMSPHQIYGVITFYAQFY 75

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P G +  ++VC  T C ++G  ++ E+ + +        + D   + EEV C GAC  
Sbjct: 76  TKPRG-KYIIRVCRGTACHVQGSGRISEIVKEEFKISNGETSGDLKFTLEEVSCIGACGM 134

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           AP++MI   TY +L PE   +I   ++    D
Sbjct: 135 APVIMINNKTYGNLKPEDARKIFREYANLPED 166


>gi|51244536|ref|YP_064420.1| NADH dehydrogenase subunit E [Desulfotalea psychrophila LSv54]
 gi|50875573|emb|CAG35413.1| probable NADH-ubiquinone oxidoreductase, 24 kDa subunit
           [Desulfotalea psychrophila LSv54]
          Length = 154

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   Q + G++   A+  VA+ L +   RV  +ATFY QF+ +PVG +  V VC  
Sbjct: 19  LIPILQNVQHKFGYLPEDAMREVADFLRIPESRVYGVATFYEQFRFTPVG-KTKVTVCRG 77

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C +RG +K+I     ++  K      DG  + E   C G C  AP VMI ++   +LT
Sbjct: 78  TACHVRGAQKIIASVEKRLGIKEGETTEDGEYTLETAACIGCCALAPCVMINEEVEANLT 137

Query: 162 PERLEEIIDA 171
           P+++    D 
Sbjct: 138 PKKMNAYFDQ 147


>gi|291334207|gb|ADD93874.1| NADH quinone oxidoreductase E subunit [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 165

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAAIEVVANILDMAYIRVL 76
           FSE     ++ + S++P  + +SA+I  L+  Q +  G++S   I  +AN LD+  I V 
Sbjct: 7   FSENITREIDLIRSKFPVDKSKSAIIESLLIIQHDNSGFLSDELIASLANYLDIQKIDVY 66

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ATFY+ F L PVG +  + VC    CMLR  + ++     ++  K      D     +
Sbjct: 67  EVATFYSMFNLKPVG-KNTISVCTNVSCMLRNSDGIVNHIEKRLKIKIGESTKDNKFYLK 125

Query: 137 E-VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + +EC  AC  APM+ +    YE+LT E++++I+D  +
Sbjct: 126 DEMECLAACNGAPMMQVNHINYENLTFEKVDKILDEIA 163


>gi|158425076|ref|YP_001526368.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
 gi|158331965|dbj|BAF89450.1| NADH dehydrogenase I chain E [Azorhizobium caulinodans ORS 571]
          Length = 159

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           SA    E+I+ +       A +P+L   QE  G+V    + ++A  L+++   V  + TF
Sbjct: 10  SASRAAEIIAEH--RHMDGATMPILHAVQETFGFVPDPVVPMIAESLNLSRAEVYGVVTF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  +++C    C   G EKL      ++  +    + DG ++ E + C 
Sbjct: 68  YHDFRREPPG-RHVIKLCAAEACQSMGSEKLARYAEERLGIEMGETSPDGKVTLEPIYCL 126

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C  AP  MI       L    ++E++  
Sbjct: 127 GLCACAPSAMIDGRLVGRLDEATIDELVAE 156


>gi|258516936|ref|YP_003193158.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780641|gb|ACV64535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 222

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +++++  Y   R +  +I +L  AQ+  G++       +A  +D+    V  + TFY
Sbjct: 43  YAELDKLLELY--GRERGELIRVLYGAQKIFGYLPPEVQAYIAAKMDIPISEVNGVVTFY 100

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   P G R  V+VC  T C ++G   +++  + ++         DG  +     C G
Sbjct: 101 TLFVTEPRG-RHTVRVCTGTACYVKGAADIMDKFKQELKLDGRETGEDGLFTLTSTRCIG 159

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
           AC  AP++ + ++ Y +LT + +  I++ + +   D +  G      ++  A
Sbjct: 160 ACGMAPVLTVDEEVYGNLTAKDVITILEKYRS---DPVAAG--SGTAAAEKA 206


>gi|268323354|emb|CBH36942.1| putative NADH-quinone oxidoreductase chain E [uncultured archaeon]
          Length = 153

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V+E+I RY     +  +I LL+  Q +  W+S+ AI  ++  + +   ++  IA+F
Sbjct: 5   DLKRVDEIIERYKGE--EGVLIQLLLDVQSEFNWISKEAITQISERMQIPKSQIYRIASF 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y    L PVG R  +QVC  T C +RG  K+++     +  K     SD   S + V C 
Sbjct: 63  YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P++++    +  +TP  +E I++ +
Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152


>gi|85857932|ref|YP_460134.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
           aciditrophicus SB]
 gi|85721023|gb|ABC75966.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophus
           aciditrophicus SB]
          Length = 173

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     + E+IS+Y   +  SA + +L   QE+  ++ + A+ +V++ L +   R+ EIA
Sbjct: 17  EVDRGKIREIISKYDGEK--SAAVAVLQDLQEEFRYLPKEALTIVSDELQVPLSRIYEIA 74

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L P G +  ++VC  T C ++G   L+      ++        D   + EEV 
Sbjct: 75  TFYNVFSLKPRG-KYLIEVCAGTACHVQGGFNLMNRLERNLNISCGETTEDAMFTLEEVR 133

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C G C  AP+V I  + +  LT + +  I+  +   
Sbjct: 134 CLGCCSLAPVVRIDGNIHPYLTQDEIPGILKNYRKA 169


>gi|119510368|ref|ZP_01629503.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
 gi|119465005|gb|EAW45907.1| ATP synthase subunit E [Nodularia spumigena CCY9414]
          Length = 179

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 1   MSVRRLAEEEFQ---PSSFSFSEES-AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
           M +    +   Q   PS+    E+     ++  I RY     Q A+I +L +AQE  G++
Sbjct: 1   MDLASAVKSNNQAKAPSATDIHEDKRLKMLSATIKRY--QYQQDALIEILHKAQELFGYL 58

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
            +  +  +A+ L +    V  +ATFY  F L+P+G R    VC  T C ++G E+++   
Sbjct: 59  KKDVLVYIAHQLKLPPSTVYGVATFYHFFSLAPIG-RHSCMVCTGTACYVKGAEEILNSL 117

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            N IH +P   ++DG +S     C G C  AP+V+       D TPE + + I  +
Sbjct: 118 ENSIHIRPGETSADGQISLLTARCLGPCGIAPVVVFDDTVLGDQTPESVGDRIKGW 173


>gi|310658218|ref|YP_003935939.1| fe hydrogenase, electron-transfer subunit [Clostridium sticklandii
           DSM 519]
 gi|308824996|emb|CBH21034.1| putative Fe hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 159

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + ++E    + + I+       ++A+I +L +AQ   G++ +     +   L +   +V 
Sbjct: 5   TLNKELYDQLADYIAN--IENKETALIEVLHKAQNLFGFIPKEVQLFIGEKLGVPASKVF 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY+ F   P G +  + VC  T C +R  + L+      +  KP     +   S E
Sbjct: 63  GVVSFYSYFTTEPKG-KYVINVCMGTACFVRKADSLLRELEKVLCIKPGETTENKMYSIE 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            + C GAC  AP++M+  + Y  +T + + +I+  ++
Sbjct: 122 ALRCVGACGLAPVIMVNDEVYGKVTVDDIPKILAKYA 158


>gi|323702076|ref|ZP_08113744.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532958|gb|EGB22829.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 159

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    ++ + ++Y  +   + +I +L   QE  G++ +  +   A  L +    V  +AT
Sbjct: 10  EQDKKLDALFAQYKGN--PNGLIVVLAAIQEVHGYLPKDYLIKTAEELGVPLSDVYGVAT 67

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F L P G R  V +C  T C ++G  ++  +   ++  K  +   D   S + V C
Sbjct: 68  FYAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQAMLEKEMGIKAGNTTEDRRFSLDLVRC 126

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            GAC  AP++ +  + Y  +T E++ EI+  +
Sbjct: 127 LGACGIAPVMTVNGEVYPRMTAEKVSEILAKY 158


>gi|300245745|gb|ADJ93930.1| putative benzoate-degrading protein BamG [Clostridia bacterium
           enrichment culture clone BF]
          Length = 178

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    +N VI  +       A+IP+L +AQ+  G++       V+  L +    V  + 
Sbjct: 19  DEKLAKLNAVIEEFKD--QPGALIPVLHKAQQIYGYLPEEVQYHVSQGLRVPLADVYGVV 76

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F ++P G   ++ VC  T C ++G  +L+    +++  K    + D   S E   
Sbjct: 77  TFYALFTMTPRGE-NNIAVCLGTACYVKGAGELVSKISDELGIKIGEISQDRKFSMEATR 135

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C GAC  AP++ + ++ +  L   +L E++  +      + RP
Sbjct: 136 CIGACGLAPVLTVNEEVHGRLDAGQLGELLQKYKEQYAVSSRP 178


>gi|91203918|emb|CAJ71571.1| similar to to proton-translocating NADH dehydrogenase I, 24 kDa
           subunit (NuoE) [Candidatus Kuenenia stuttgartiensis]
          Length = 164

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 19  SEESAI----WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           S E+         +V+ +Y   R   ++IP+L   Q   G++    ++ V+  L+++   
Sbjct: 8   SAENEALYLSKTEDVLEKYKHGR--GSLIPILQTIQTAYGYLPEKVVDFVSERLNISVNE 65

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           ++ +ATFY QF + P G R  ++ C  T C ++G +++IE    K+         D   +
Sbjct: 66  IIGVATFYAQFHMRPRG-RHIIKACSGTACHVKGAKQIIEKLGKKLDIPVGETTKDTMFT 124

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            EEV C GAC  AP++M+ +D Y  L    +  IID   
Sbjct: 125 LEEVACLGACSLAPVIMVDEDVYGQLLHNTVGNIIDEIK 163


>gi|146278887|ref|YP_001169046.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557128|gb|ABP71741.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 157

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    V+E++  +     +  ++P+L   QE  G V   ++  +A  L+++   V  + 
Sbjct: 6   AEVCARVDEILDEHEG--LEGPLLPILHAVQEAFGHVPLESLPRIAERLNLSRAEVHGVM 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G ++L E  + ++        +DG ++ E V 
Sbjct: 64  SFYHDFRTRPHG-RHVLKLCRAEACQAMGADRLAEATQARLGIGWHQTTADGGVTLEPVF 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  AP  ++       +   RL+ I++    
Sbjct: 123 CLGLCACAPAALVDGRVVGRVDDARLDRILEEVRA 157


>gi|52549206|gb|AAU83055.1| NADH-ubiquinone oxidoreductase 24 kD subunit [uncultured archaeon
           GZfos26D6]
          Length = 153

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V+E+I  Y     +  +I LL+  Q +  W+S+ AI  ++  + +   ++  IA+F
Sbjct: 5   DLKRVDEIIEHYKGE--EGVLIQLLLDIQSEFNWISKEAIAQISERMQIPKSQIYRIASF 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y    L PVG R  +QVC  T C +RG  K+++     +  K     SD   S + V C 
Sbjct: 63  YEAMSLEPVG-RHIIQVCLGTACQVRGAPKILDRIEGNLKIKGGETTSDMRFSLKRVNCL 121

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P++++    +  +TP  +E I++ +
Sbjct: 122 GCCAMGPVIVVDGIYHGKITPAMVEGILETY 152


>gi|256422832|ref|YP_003123485.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037740|gb|ACU61284.1| NADH-quinone oxidoreductase, E subunit [Chitinophaga pinensis DSM
           2588]
          Length = 154

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S      ++  I   P    ++ VI  L   Q+  GW+S  ++E +A+ L ++   V  
Sbjct: 2   LSTTEKEAIDHEIGLVP--HKRATVIEALKIVQQHRGWISDDSVEEIAHYLGISPAEVDS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG R  + +C +  C + G + L    + K+         D   +   
Sbjct: 60  VATFYNLIFRKPVG-RHVILLCDSISCYVMGYKSLYAALQRKLQISFGQTCPDNRFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             C G C +AP +MI KD Y D+T E+L++I+  ++
Sbjct: 119 NACLGCCDHAPAMMIDKDLYRDITIEQLDDILKKYA 154


>gi|256827980|ref|YP_003156708.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577156|gb|ACU88292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 175

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +       + +I+ +  +  Q ++I +L   Q+  G+     I  +A+ ++     V  
Sbjct: 23  LTPAQFAQADAIIAAHRDT--QGSLITVLRLCQDIVGYFPLELIRYIASGMNQPLSTVYG 80

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY+ F L P G R +++VC  T C +RG  ++++    +   K       G  S E 
Sbjct: 81  VISFYSLFSLKPKG-RHNIRVCTGTACYVRGVREVLDRVERRFGVKAGGTCESGRFSLEP 139

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           V C GAC  AP++++ +DT+  +TP+   EI++ +
Sbjct: 140 VRCLGACGLAPVMVVDRDTHGGVTPDSACEILEGY 174


>gi|160902192|ref|YP_001567773.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
 gi|160359836|gb|ABX31450.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 169

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               +S +I +L + QE  G++     ++VA  L +   +V  + TFY  F   P G + 
Sbjct: 26  EEERRSLLIEVLHKVQENLGYIPNEVQKLVAKKLKIPSSQVYGVVTFYNFFSTKPKG-KY 84

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  T C + G  ++++  +  ++ +      DG  S   V C GAC  AP+V IG+
Sbjct: 85  PISVCLGTACYVGGANEILDEFKKILNVEEEEVTEDGLFSIHPVRCLGACGLAPVVKIGE 144

Query: 155 DTYEDLTPERLEEIIDAFSTGQGDT 179
             Y  L    +  II  +   + ++
Sbjct: 145 KVYGRLKINDVRRIIRDYRAKEKNS 169


>gi|126434144|ref|YP_001069835.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
 gi|126233944|gb|ABN97344.1| NADH dehydrogenase subunit E [Mycobacterium sp. JLS]
          Length = 294

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 9/180 (5%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                +++RYP +R  SA++PLL   Q ++G ++ A I   AN L +    V  +ATFY+
Sbjct: 41  ADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYS 98

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEVE 139
            ++ +P G    V VC  T C + G +++++  ++ +                ++ E +E
Sbjct: 99  MYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIE 157

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID--RISSAPAGGL 197
           C  AC  AP+VM+  + +++ TP    +++D+   G   T   G  +   R ++    GL
Sbjct: 158 CNAACDYAPVVMVNWEFFDNQTPTSARDLVDSLRAGTPATPTRGAPLCTFRETARTLAGL 217


>gi|24372604|ref|NP_716646.1| NADH dehydrogenase subunit E [Shewanella oneidensis MR-1]
 gi|24346629|gb|AAN54091.1|AE015546_8 NADH dehydrogenase I, E subunit [Shewanella oneidensis MR-1]
          Length = 180

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S F  S+     +      Y   R  +A I  L   Q+  GWV   AI  +A  L +   
Sbjct: 24  SDFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIAAELGIPAS 81

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++VC +  C + G E+L+   +  ++  P     DG  
Sbjct: 82  DVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLMAGLKEVMNLAPGQTTPDGRF 140

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +   V C G C   P +MI  DTY  L P  L + ++A+
Sbjct: 141 TLLPVCCLGNCDKGPAIMIDDDTYGGLDPITLLKTLEAY 179


>gi|302875115|ref|YP_003843748.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|307690259|ref|ZP_07632705.1| putative Fe] hydrogenase, electron-transfer subunit [Clostridium
           cellulovorans 743B]
 gi|302577972|gb|ADL51984.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 160

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             SE     + E I  +  +  ++ +I +L +AQE  G++ R     ++  L + Y +V 
Sbjct: 6   KLSEGKYKELEEFIKLH--NNNEAHLIVILHKAQELFGYLPREVQVFISKKLGIPYSKVY 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F  +  G +  + VC  T C +RG  +++E    K+         DG  + +
Sbjct: 64  GVVTFYSFFSTTAKG-KYVINVCKGTACFVRGAGEILEEFEKKLEINQGETTQDGKYTID 122

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + C GAC  AP+V +    Y     + ++++I  +S 
Sbjct: 123 TLRCVGACGLAPVVSVNGKVYGHFNKKDVDKLIQEYSE 160


>gi|298528320|ref|ZP_07015724.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511972|gb|EFI35874.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 173

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
              + + F+P     + +    ++ +I          AV  +L R Q+  G++    ++ 
Sbjct: 7   HTDSSDYFRPMHSDITPDMWQDIDRIIQ--ESLDIPGAVTQVLRRCQDLVGYLPVELLDY 64

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           +A  +++    V  +A+FY+ F L P G R  ++VC  T C ++G + ++   +   H  
Sbjct: 65  IARGMNIPASEVFGVASFYSLFSLKPRG-RNIIRVCTGTACHVKGADLVMRRLKQTYHLD 123

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
                 D   + E V C GAC  AP + I +  +  +TP++  +++  +
Sbjct: 124 DGSTTPDRRFTLESVRCMGACGLAPAMTINQTAHGHITPDQALKLLQEY 172


>gi|325278930|ref|YP_004251472.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324310739|gb|ADY31292.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 158

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S     +     + E+   +        +I +L +AQ   G++      +VA+ L++   
Sbjct: 2   SEIQLPQHKIDKLLEICDAH--GNQPGELINVLHKAQHLFGYLPAEVQRIVADKLNIPVS 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V  + TFY+ F ++P G    + VC  T C +RG EK+++  +  ++        DG  
Sbjct: 60  KVYGVVTFYSFFTMTPKGE-HPISVCMGTACYVRGAEKVLDEFKRILNINVGETTPDGKY 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           S   + C GAC  AP+V+IG+  +  + P  +E+I+   
Sbjct: 119 SLSSLRCVGACGLAPVVLIGEKVFGRVVPGDVEKILKEL 157


>gi|108798546|ref|YP_638743.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
 gi|119867646|ref|YP_937598.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
 gi|108768965|gb|ABG07687.1| NADH dehydrogenase subunit E [Mycobacterium sp. MCS]
 gi|119693735|gb|ABL90808.1| NADH dehydrogenase subunit E [Mycobacterium sp. KMS]
          Length = 294

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 9/180 (5%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                +++RYP +R  SA++PLL   Q ++G ++ A I   AN L +    V  +ATFY+
Sbjct: 41  ADAARIVTRYPQAR--SALLPLLHLVQAEDGCLTSAGIAFCANQLGLTDAEVTAVATFYS 98

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT----LSWEEVE 139
            ++ +P G    V VC  T C + G +++++  ++ +                ++ E +E
Sbjct: 99  MYRRTPTGD-YLVGVCTNTLCAIMGGDEILDALQDHLGVAAGQTTDPAEGLAAVTLEHIE 157

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID--RISSAPAGGL 197
           C  AC  AP+VM+  + +++ TP    +++D+   G       G  +   R ++    GL
Sbjct: 158 CNAACDYAPVVMVNWEFFDNQTPASARDLVDSLRAGTPAAPTRGAPLCTFRETARTLAGL 217


>gi|206896425|ref|YP_002246547.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206739042|gb|ACI18120.1| Fe-hydrogenase gamma subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 172

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    + E+       +   ++I +L  AQE  G++     E+++    +    +  I 
Sbjct: 14  EEFRAKLEEL------KKVPGSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIV 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY++F + P G +  + +C  T C +RG  +++E  +  +        SDG  S E   
Sbjct: 68  TFYSRFSIVPAG-KYKISLCLGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAAR 126

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C GAC  AP++MI  + Y  LTP+   ++I     
Sbjct: 127 CLGACALAPVMMINGEVYGRLTPDEAVKVIQRIKK 161


>gi|295110159|emb|CBL24112.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus obeum
           A2-162]
          Length = 159

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I  Y   R  +++IP++   Q +  ++    +  VA+ + +   +   
Sbjct: 2   LDQSYYAKTDEIIEHY--GRKPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    + E    ++      H   D   + E
Sbjct: 60  VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP + +  + +  +TPE+  E+++   
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIELLNELR 155


>gi|147678347|ref|YP_001212562.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274444|dbj|BAF60193.1| NADH:ubiquinone oxidoreductase, 24 kD subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 162

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    + ++I +Y      + +I +L RAQE  G++ R A+ ++A  L ++   V  + 
Sbjct: 11  DELTKQLEKIIDQY--RGQPTGLIQVLTRAQELIGYLPRWALIMIAEGLGLSLQEVYGVV 68

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L P G R  + VC  T C ++G + +++  R  I  KP     D   + E V 
Sbjct: 69  TFYAFFSLIPRG-RHKISVCAGTACYVKGTKMVLKTLREAIGIKPGQTTPDSRFTLEIVR 127

Query: 140 CQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFS 173
           C GAC  AP ++I   D +  L PE++  I++ ++
Sbjct: 128 CIGACGLAPAMIIDGKDVHGRLEPEQIPAILEQYA 162


>gi|90416714|ref|ZP_01224644.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90331467|gb|EAS46703.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 162

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 3/164 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              S+     ++ ++ +Y  ++   A++PLL   Q   G+V  +A+ ++A  L+++   V
Sbjct: 1   MGISQNEQQSISALVGQY--TQLPGALLPLLHAIQSDLGYVPDSAVPIIAKGLNLSRAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY  F+ +PVG R  VQVC    C   G  +L    +  +        +DG ++ 
Sbjct: 59  HGVISFYHDFKTTPVG-RHTVQVCRAEACQSMGSRQLEAHAKQALGIDYGETTADGAVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           E V C G C  +P V I    Y  +  +  ++++    T +G +
Sbjct: 118 EPVYCLGNCACSPSVRIDDAIYARVDTDLFDDLMSGLLTEEGAS 161


>gi|330508799|ref|YP_004385227.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
           concilii GP-6]
 gi|328929607|gb|AEB69409.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanosaeta
           concilii GP-6]
          Length = 153

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +     + E+I  Y     + ++I LL+  Q +  W+S+ A++ ++  L +   R+  IA
Sbjct: 3   DNEHKRLVEMIDGYKG--KEGSLIQLLLDLQSEFNWISKDALQEISERLKIPPSRIYRIA 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY    L P+G +  + VC  T C +RG   +++   +K+  K      D   + + V 
Sbjct: 61  SFYEAISLKPIG-KHKISVCMGTACQVRGSGMILDRTESKLKIKQGGTTPDMRFTLKRVN 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C G C   P++++  D +  LT +R+E II  +
Sbjct: 120 CLGCCAIGPVMVVDDDYHGRLTSDRVERIIKKY 152


>gi|295798104|emb|CAX68923.1| NADH-quinone oxidoreductase 24 kD subunit E [uncultured bacterium]
          Length = 161

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E      + + + YP  R  + ++P+L   QEQ  ++     E VA    +    V E+ 
Sbjct: 10  ETLRHQADSICANYPVKR--AGLLPVLRLIQEQYSFIPPHVEEQVAQYFQIPPADVREVM 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFYT F   P   +  + VC T  C L G ++++     K+  KP    +DG  + +EVE
Sbjct: 68  TFYTLFHSKPR-AKCEINVCRTLSCSLMGAKEMVAYISEKLGIKPGETTADGRFTLKEVE 126

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  APM  +G +    LT E+++ II  +
Sbjct: 127 CLGACEIAPMAQVGHEYVGPLTREKIDHIIQQY 159


>gi|123446843|ref|XP_001312168.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
           [Trichomonas vaginalis G3]
 gi|55793665|gb|AAV65813.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Trichomonas
           vaginalis]
 gi|121894006|gb|EAX99238.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein
           [Trichomonas vaginalis G3]
          Length = 201

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 5/166 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIR 74
           F FS++S   V+ ++++YP    ++A IPLL   Q + G +++   ++ ++ I+ +   R
Sbjct: 25  FKFSDQS--KVDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGR 82

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTL 133
           V E A FY+ F+  P      V+VC    C L G + + E  +          ++ DG  
Sbjct: 83  VHETACFYSMFRFQPP-NNHIVEVCKGLSCYLTGSDNVKEAIQKATGGTFKEGKSPDGQF 141

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           + EEVEC GAC NAP++++    Y++LT E  + II+    G+   
Sbjct: 142 TLEEVECLGACANAPVMILDGVYYQNLTAETAKIIIECVKAGKSVK 187


>gi|91200212|emb|CAJ73256.1| strongly similar to to proton-translocating NADH dehydrogenase I,
           24 kDa subunit (NuoE) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 156

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+ G++   A+E V+   D+   R+  + TFY+QF L P G +  V++C  
Sbjct: 27  LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSLVPRG-KHTVRLCAG 85

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G   + E   + +  K      D   + + V C G C  AP++MI    Y  LT
Sbjct: 86  TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 145

Query: 162 PERLEEIIDAF 172
            E+ EEI+ ++
Sbjct: 146 EEKTEEILKSY 156


>gi|325261422|ref|ZP_08128160.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
 gi|324032876|gb|EGB94153.1| Fe-hydrogenase, gamma subunit [Clostridium sp. D5]
          Length = 170

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 3/154 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E+ + Y     + ++I +L  AQ   G++     EV+A+ LD+    V  + TFY
Sbjct: 19  LQRIGELAAEY--RGKEGSLIQVLHMAQGLYGYLPLEVQEVIADSLDLPLAEVSGVVTFY 76

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F   P G +  ++VC  T C +RG +K++E  +  +  +      D   ++E   C G
Sbjct: 77  SFFATQPRG-KHTIRVCLGTACYVRGGKKIVERLKKILDVEIGETTKDRKFTFEVARCIG 135

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +C  AP + I    Y+ + P++LE+I+  +   +
Sbjct: 136 SCGLAPAMSIDDQVYKQVNPDKLEQILQRYYEEE 169


>gi|304312243|ref|YP_003811841.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
 gi|301797976|emb|CBL46198.1| NADH dehydrogenase I, chain E [gamma proteobacterium HdN1]
          Length = 180

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E A  +   +S+YP ++  S  I  L   Q   GWVS  +++ VA  L ++   V  
Sbjct: 24  LSPEEAAEILAGLSQYPDNQAMS--IEALKIVQHHRGWVSNESLKAVAAFLRLSPEEVEG 81

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY       VGT   V+VC +  C + GCE L+   +NK+        +DG  +   
Sbjct: 82  VATFYNLVYRQRVGT-HVVRVCDSVSCWIMGCEALVGELQNKLQLTLGETTADGRFTLLP 140

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             C GAC +AP+VM+G D + D+  E ++ ++  + 
Sbjct: 141 GPCMGACDHAPVVMVGDDYHFDVKAEAIDALLKPYR 176


>gi|289523905|ref|ZP_06440759.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502561|gb|EFD23725.1| NADH dehydrogenase I, E subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 177

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + +++++         +IPLL R QE  G++ + A+  ++ +L + Y +V  +ATFY 
Sbjct: 31  KELEDIVNKAKEENL--GLIPLLQRTQEVIGYLPKEALVALSEMLHIPYSKVFGVATFYA 88

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           QF L+P G R  +Q C  T C ++G  ++  V   K+   P     D   ++E V C G+
Sbjct: 89  QFHLTPRG-RHVIQQCDGTACHVKGGPRIRRVIEEKLGISPGETTEDLKATYEIVYCLGS 147

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP  MI       LT E+++ I+D+ 
Sbjct: 148 CGLAPAAMIDGKVIGRLTQEKMKRILDSM 176


>gi|260588481|ref|ZP_05854394.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
 gi|260540956|gb|EEX21525.1| NADH dehydrogenase I, E subunit [Blautia hansenii DSM 20583]
          Length = 159

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I  Y   R  S++IP++   Q +  ++    +  VA  + +   +   
Sbjct: 2   LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    ++E  + ++   K  H   D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKKHTTDDMLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP + +  + Y  +TPE+   +I    
Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELR 155


>gi|332971175|gb|EGK10139.1| NADH-quinone oxidoreductase subunit E [Psychrobacter sp.
           1501(2011)]
          Length = 170

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++E I  YP +R  +A +  L   Q++ GWV  A +  +AN+LD+    +  
Sbjct: 18  LTAQEIEGIHEYIHHYPQAR--AASLDALKLVQKRNGWVDDAQVNAIANLLDVPVTDIEG 75

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +   SPVG R  + VC +  C L G E L    ++++  +     +DG  +   
Sbjct: 76  VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEGLAAELKSQLGIEFGQTTTDGRFTLLP 134

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P V+I +DT+  +TP+++ E+++ +
Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVTPDQVAELLEYY 169


>gi|300854658|ref|YP_003779642.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
           13528]
 gi|300434773|gb|ADK14540.1| NADH dehydrogenase, 24 kDa subunit [Clostridium ljungdahlii DSM
           13528]
          Length = 160

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
               E    ++  I        + ++I +L RAQ+  G++       +AN LD++  +V 
Sbjct: 5   KLDNEKLKELSSYIDSLEE--KEGSLISVLHRAQDIFGYLPEELQTFIANKLDISAAKVF 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F + P G +  + +C  T C ++G E ++E  RN++  K      DG  + +
Sbjct: 63  GVVTFYSYFTMKPKG-KHVISICMGTACFVKGAENILEEFRNQLKVKDGFTTEDGLFTID 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            + C GAC  AP+V++    +  +  E ++ I+  +
Sbjct: 122 ILRCVGACGLAPVVVVDGTVHGKVKVEDVKGILSQY 157


>gi|260466531|ref|ZP_05812720.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
 gi|259029680|gb|EEW30967.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mesorhizobium
           opportunistum WSM2075]
          Length = 159

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             QP+S   +  +A  V E+         +  ++P+L   QE+ G V    + V+A+ L+
Sbjct: 2   TMQPASTEIASRTAAIVQEL------KDVEGPLLPILHGIQEEFGHVPHDVLPVIADGLN 55

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           ++   V  + TFY  F+  P G R  +++C    C   G + +    +  +         
Sbjct: 56  LSRAEVHGVVTFYHDFRARPAG-RHVLKLCQAEACQSMGSDAVAAKVKQLLGIDFHETTR 114

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           DG+++ E V C G C  +P  M+  +    L  ++++EI+    +
Sbjct: 115 DGSVTLEPVYCLGLCACSPSAMLDGEVIGRLDDDKIDEIVAEVRS 159


>gi|115375220|ref|ZP_01462486.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|310818919|ref|YP_003951277.1| NADH dehydrogenase I subunit E [Stigmatella aurantiaca DW4/3-1]
 gi|115367782|gb|EAU66751.1| NADH-ubiquinone oxidoreductase 24 kda subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|309391991|gb|ADO69450.1| NADH dehydrogenase I, E subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 162

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 18  FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           F+ E     +    E++S YPP R  + ++P L   Q+ +GW     I +VA  L++   
Sbjct: 6   FTPEEQKKFDAGISEILSHYPPDRKSAGMLPALRLLQDLKGWCPPEGIRLVAKNLEVTPE 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R  E+A+FY  + L   G +  + VC    C LRG EK++    NK+  K    N   T 
Sbjct: 66  RAYEVASFYVMYHLKKPG-KYTIDVCTNLSCSLRGAEKMLAYLENKLGLKAGEANE--TF 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +  E EC  +C  AP + + +D +E+LT  R++E++   
Sbjct: 123 TLRETECLASCGTAPCLQVNEDHHENLTKARVDELLAKL 161


>gi|319779202|ref|YP_004130115.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
           MCE9]
 gi|317109226|gb|ADU91972.1| NADH-ubiquinone oxidoreductase chain E [Taylorella equigenitalis
           MCE9]
          Length = 219

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 2/167 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              S ++   ++  + +YP  + QSAV+  L  AQ +  WVS   ++ +A  L+M  + V
Sbjct: 1   MLLSNKAYELIDAELKKYPEDQRQSAVMSALRIAQTELNWVSPEVVQDIATYLNMPVMAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY  ++L PVG +  + VC   PC LR   + I   + K+       + DG ++ 
Sbjct: 61  QEVATFYNMYELQPVG-KYKITVCTNLPCALREGVQTINYLQEKLGIGIDETSQDGLITI 119

Query: 136 EEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +  EC GAC ++P+++I        +   R++E+ID     +G    
Sbjct: 120 KSGECMGACGDSPVLLINNHHMCVRMDKARIDELIDDIYKEEGVEPA 166


>gi|310827346|ref|YP_003959703.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
 gi|308739080|gb|ADO36740.1| hypothetical protein ELI_1754 [Eubacterium limosum KIST612]
          Length = 162

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   +++++S YP  R  S  + ++   Q    ++    ++ +A  LD     +  +ATF
Sbjct: 5   TKESIDKILSAYPRDRRHS--LAMMQDMQHHFNYIPEQGMKALAEYLDCPLSSLYSMATF 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y    L P G +  +++C  T C +RG   LI   + ++   P   + DG  S E V C 
Sbjct: 63  YRALSLKPKG-KHIIKLCDGTACHIRGSVNLITGIKRELDISPGETSGDGLFSLETVNCL 121

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G+C  AP+++I    Y  +T E+L EI++ +  
Sbjct: 122 GSCALAPVMVIDGVYYGKVTLEKLPEILNQYRE 154


>gi|251773163|gb|EES53716.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 176

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++ +   +     + AV+ +L   Q++ G+V    +E V   L + + ++  + TFY+
Sbjct: 15  EEIDHICEEF--GNREGAVVQILQTIQDKYGYVPAEVLERVGEDLGIPHSKMFGVLTFYS 72

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           QF   P G +  ++VC  T C +RG   L++  +  +H +      D   + E V C G+
Sbjct: 73  QFYREPRG-KFILKVCVGTACHVRGAGLLVDKIKENLHIEEGENTEDMMFTLEPVSCLGS 131

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS---TGQGDT 179
           C  APM M+  +TY  L+ +++ +++  F     G+ +T
Sbjct: 132 CALAPMAMVNGNTYGKLSGDKMVDLLKQFREESAGEPET 170


>gi|331082242|ref|ZP_08331369.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403036|gb|EGG82601.1| hypothetical protein HMPREF0992_00293 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 159

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I  Y   R  S++IP++   Q +  ++    +  VA  + +   +   
Sbjct: 2   LDQSYYEKTDEIIEFY--GRKASSLIPIMQDIQAEYRYLPGELLTYVAKEIGVREAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    ++E  + ++   K  H   D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILEALQKELGLSKKQHTTDDMLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP + +  + Y  +TPE+   +I    
Sbjct: 119 TVSCLGACGLAPTMTVNNEVYPSMTPEKALNLIAELR 155


>gi|251779355|ref|ZP_04822275.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083670|gb|EES49560.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 163

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
               EE    ++ +++ +  +  +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++
Sbjct: 1   MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134
             +ATFY  F L P G +  +++C  T C +RG   ++E  R  +          D   +
Sbjct: 59  YGVATFYENFSLQPKG-KYVIKICNGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            E V C GAC  AP+  +    Y  +T ++  +II     
Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157


>gi|188588389|ref|YP_001921433.1| Fe-hydrogenase gamma subunit [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498670|gb|ACD51806.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum E3
           str. Alaska E43]
          Length = 163

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
               EE    ++ +++ +  +  +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++
Sbjct: 1   MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134
             +ATFY  F L P G +  +++C  T C +RG   ++E  R  +          D   +
Sbjct: 59  YGVATFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            E V C GAC  AP+  +    Y  +T ++  +II     
Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKQLKE 157


>gi|307823548|ref|ZP_07653777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307735533|gb|EFO06381.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 158

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V E+I+         A++P+L   Q+  G++   ++  +A  L ++   V  + +FY  F
Sbjct: 11  VQEIIAALKD--KPGALLPILHGIQDAMGYIPAESVPYIATALSLSRAEVHGVISFYHYF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P G +  + +C    C   G  KL E  ++K+        +DG  S E V C G C 
Sbjct: 69  RDTPPGVQ-TIHLCRAESCQSMGGRKLEEHVKSKLGIDFHETTADGKFSLEPVYCLGNCA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIID 170
            +P + IGK+ Y  ++ +  + +I+
Sbjct: 128 CSPAMQIGKEIYGRVSADSFDAVIN 152


>gi|166032052|ref|ZP_02234881.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
           27755]
 gi|166027775|gb|EDR46532.1| hypothetical protein DORFOR_01754 [Dorea formicigenerans ATCC
           27755]
          Length = 162

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F          +E+I+ +  +R + ++IP++   QE+  ++    +  VA  + ++  + 
Sbjct: 5   FMLDASYYEKTDEIIACH--TREERSLIPIIQDIQEEYRYLPPELLSYVAGKIGISEAKA 62

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLS 134
             +A+FY  F     G +  ++VC  T C +R    ++E    ++   K  H   D   +
Sbjct: 63  FSVASFYENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLNKDKHTTDDQLFT 121

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            E V C GAC  AP VMI  + Y  +TPE++ E+I     
Sbjct: 122 VETVSCLGACGLAPAVMINDEVYGKMTPEKMSELIKKLRE 161


>gi|187736102|ref|YP_001878214.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426154|gb|ACD05433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 10/175 (5%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E F P+ F  + E     +E ++ YP  + +SAV+P+L   Q++ G++S  AI  V   L
Sbjct: 21  ERFYPA-FEVTPELDAAASEYVTHYPEGKQKSAVLPILHEIQKKFGFISGDAIAWVGEKL 79

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK----- 123
           +++   VL + TFY   +    G + H++VC T  C + G + L +    ++        
Sbjct: 80  NISAAHVLGVVTFYPGLRQMCPG-KNHIRVCRTLSCAMAGADSLFDAICTRLGIDKNGID 138

Query: 124 ---PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
              P+  + DG  S E VEC   C   P +M+    YE +TPE LEE+I  + T 
Sbjct: 139 HHHPIGVSPDGLWSVEGVECLANCGFGPNMMVNDLLYEKVTPEVLEEVIAKYQTA 193


>gi|187934365|ref|YP_001886498.1| Fe-hydrogenase gamma subunit [Clostridium botulinum B str. Eklund
           17B]
 gi|187722518|gb|ACD23739.1| putative iron hydrogenase, gamma subunit [Clostridium botulinum B
           str. Eklund 17B]
          Length = 163

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
               EE    ++ +++ +  +  +S+VI ++   Q+Q  ++ + A+  +A  L ++  ++
Sbjct: 1   MMLKEEEMKELDNILASH--NYQKSSVIAVMQEVQKQYRYLPKEALCYIAKHLKISEAKI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134
             +ATFY  F L P G +  +++C  T C +RG   ++E  R  +          D   +
Sbjct: 59  YGVATFYENFSLQPKG-KYVIKICDGTACHVRGSIPILEEFRKLLGLSESKVTTDDMIFT 117

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            E V C GAC  AP+  +    Y  +T ++  +II     
Sbjct: 118 VETVSCLGACGLAPVCTVNDVVYPSMTQQKARDIIKKLKE 157


>gi|157364375|ref|YP_001471142.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
 gi|157314979|gb|ABV34078.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotoga
           lettingae TMO]
          Length = 164

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P + +  E     ++E I+          +I +L +AQE  G++S      +A +L +  
Sbjct: 2   PDTCTTGERLFKELDEYIAS--TGAKPDKLISVLQKAQELFGYLSPEVQNHIAEMLKIPV 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  + TFY  F   P G +  V+VC  T C ++G +++ E    ++         DG 
Sbjct: 60  SQVYGVVTFYNFFSTRPKG-KVQVKVCLGTACYVKGADRIFERFLEELATSAEEPTKDGQ 118

Query: 133 LSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFST 174
            S   V C GAC  AP+V++G+ D Y  + P+ +  II+ +  
Sbjct: 119 FSVHAVRCLGACSMAPVVLVGEKDFYGRVKPDMVPRIIEKYRE 161


>gi|111075025|gb|ABH04875.1| NAD(P)H-quinone oxidoreductase 24 kDa subunit [Heliobacillus
           mobilis]
          Length = 171

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 3/165 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S +       ++  YP  + Q   + +L   Q++  ++ R ++E++A+ L++   ++  +
Sbjct: 5   SPDRVAVTGRILEGYP--KEQRYTLAMLQDIQKEFQFIPRESMELIADYLELPLSKIYSL 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY    L P G +  +++C  T C +R  + L       +  +P     DG  S E V
Sbjct: 63  ATFYKALSLRPKG-KHVIKICDGTACHIRSSQMLANELYTLLKIRPGETTEDGQFSIEMV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            C GAC  AP+++I +  Y  +TP +L+EII  +    G + R G
Sbjct: 122 NCLGACAIAPVIVIDETFYGKVTPAKLQEIIAQYGDAFGQSDRSG 166


>gi|332652332|ref|ZP_08418077.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
 gi|332517478|gb|EGJ47081.1| Fe-hydrogenase, gamma subunit [Ruminococcaceae bacterium D16]
          Length = 164

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S   V E+I+ Y   R Q  +I ++   Q +  ++S   +E++A  L++   +V  +ATF
Sbjct: 6   SLARVEEIINSYGCQRHQ--LIAIMQDVQAEFKYLSPQVLELIAQKLNIGVAKVYSVATF 63

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
           Y  F L   G +  ++VC  T C +R  + +    R  +  +     ++DG  + E V C
Sbjct: 64  YENFSLEAKG-KYIIKVCDGTACHVRKSQPIYNAIREYLELEDKQKTSADGLFTLETVAC 122

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            GAC  AP+V +    +  ++PE   +++++    + 
Sbjct: 123 LGACGLAPVVTVNDQVHSKMSPELAIDLLESLRKEEA 159


>gi|255505333|ref|ZP_05345528.3| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
           14469]
 gi|255268421|gb|EET61626.1| NADH dehydrogenase I, E subunit [Bryantella formatexigens DSM
           14469]
          Length = 172

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +E+I+ Y   +  +++IP++   Q    ++    +  VA  + +   +   +ATFY
Sbjct: 19  YQKADEIIAFY--GKKPASLIPIMQDIQGVYRYLPGELLTYVAGQIGITEAKAFSVATFY 76

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141
             F   P G +  ++VC  T C +R    ++E  + ++      H   D   + E V C 
Sbjct: 77  ENFSFEPKG-KYIIKVCDGTACHVRKSAPILEAFQKELGLSAKKHTTDDMLFTVETVSCL 135

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           GAC  AP VM+ +D +  +TPE+  ++I      Q D
Sbjct: 136 GACGLAPTVMVNEDVHPKMTPEKAIDLIRELRGDQHD 172


>gi|323703082|ref|ZP_08114737.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531976|gb|EGB21860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 187

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +++V++ Y   R    +I +L  AQ   G++       +++ +D+    V  + 
Sbjct: 9   EEKFNRLDQVLAVY--GRDPEQLIRVLQEAQHIFGYLPEEVQAYISHKMDIPVSAVNGVV 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G + +V VC  T C ++G +K+ +  R+++  K      D   +     
Sbjct: 67  TFYALFSTEPKG-KYNVNVCLGTACYVQGAQKIYDTFRDQLGLKDSDTTEDMLFTVRSSR 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           C GAC  AP++ + +D +  LT   + E+I  +   +    +
Sbjct: 126 CLGACGLAPVITVNEDVHGKLTARDVAELIGRYKKKEAAGEK 167


>gi|126666307|ref|ZP_01737286.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
 gi|126629108|gb|EAZ99726.1| NADH dehydrogenase subunit E [Marinobacter sp. ELB17]
          Length = 174

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 3/166 (1%)

Query: 7   AEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVAN 66
           A +      F   E+    +      Y   + Q+A I  L   Q++ GWV   AI  +A 
Sbjct: 11  AADLITTDGFQLHEDDRQAMLTERDHY--EQPQAACIEALKIVQKRHGWVPDGAIVAIAE 68

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
            L +    V  +ATFY+     PVG R  + +C ++ C L G E L EV   ++      
Sbjct: 69  TLGVGAGAVEGVATFYSLIFRQPVG-RHVILLCDSSSCFLTGYEALSEVLSERLGIGFGQ 127

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              DG  +   V C GAC   P +MIG DT+  +  + L+E+++A+
Sbjct: 128 TTGDGRFTLLPVCCLGACDRGPAMMIGDDTFGPIEADDLDELLEAY 173


>gi|160947615|ref|ZP_02094782.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
 gi|158446749|gb|EDP23744.1| hypothetical protein PEPMIC_01550 [Parvimonas micra ATCC 33270]
          Length = 161

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 15  SFSFS-EESAIWVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           +F F+ EE+   ++E+       +    A++P+L  AQ   G++    ++++A  + +  
Sbjct: 2   AFVFNVEENQDKIDELCEFIDKKKDIPGALMPVLQEAQSIFGYLPEEIMDLIAKRMKIFP 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +ATFY+QF   P G +  V VC  T C ++G ++++    ++I  +    + D  
Sbjct: 62  AKVFGVATFYSQFSFIPKG-KYQVSVCMGTACYVKGAQEILNEFCDRIGVEVGGTSEDLK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S  +  C G C  AP+V I +D Y  +    +  I+  + 
Sbjct: 121 FSVAQTRCIGECNLAPVVTINEDVYAHIKKADIRRIMRKYK 161


>gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate
           dehydrogenase gamma subunit) [Janthinobacterium sp.
           Marseille]
 gi|151281625|gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate
           dehydrogenase gamma subunit) [Janthinobacterium sp.
           Marseille]
          Length = 159

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +      V  +I++   +    A++P+L   Q   G++  + +  +A  L+++   V  +
Sbjct: 5   TPFDLAAVEAIIAQRKAT--PGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVHGV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            T+Y  F+  PVG    VQ+C    C  RGCE L +  +  +         D   + + V
Sbjct: 63  ITYYHFFRQHPVGE-HVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQTV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C + P + I  D Y  ++ E+   +I A
Sbjct: 122 YCLGQCASGPAIQIDDDLYARVSKEKFNSLIQA 154


>gi|188585873|ref|YP_001917418.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350560|gb|ACB84830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 158

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E    V  ++ ++     + A IP+L   Q++ G++ +  +  V ++  +    +  I T
Sbjct: 10  EEVKKVENLVKKHQD--KKGAAIPILQDIQKELGYIPKEVLPKVTSLTKIPESDLYSIVT 67

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+QF+L PVG    + VC  T C L G E++      ++       + DG  + E+V C
Sbjct: 68  FYSQFRLQPVGD-NLIHVCHGTACHLAGAEEITNALVRELEIGDEGTSPDGKFTVEKVAC 126

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEI 168
            G C  AP++ I  +T+  LTP++  +I
Sbjct: 127 LGCCSLAPVMTINGETHGRLTPDKAVKI 154


>gi|91202658|emb|CAJ72297.1| similar to nuoE subunit of the NADH:ubiquinone oxidoreductase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 162

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +IP+L   QE+ G++   A+E V+   D+   R+  + TFY+QF   P G +  V++C  
Sbjct: 33  LIPILQEMQEEYGYLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRG-KHTVRLCAG 91

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
           T C ++G   + E   + +  K      D   + + V C G C  AP++MI    Y  LT
Sbjct: 92  TACHIKGAPDIGEKIADVLQVKEGETTPDYKFTHKTVACLGTCFLAPVMMIDDRYYGKLT 151

Query: 162 PERLEEIIDAF 172
            E+ EEI+ ++
Sbjct: 152 EEKTEEILKSY 162


>gi|134299513|ref|YP_001113009.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052213|gb|ABO50184.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
          Length = 163

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V ++I  +      S +I +L   Q   G++ +  +  +A  + ++   VL +ATFY QF
Sbjct: 12  VQKIIDSHEG--KVSHLIGILQEVQSDYGYLPKEVLTYIATSMGISPATVLGVATFYAQF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGAC 144
            L P G +  ++VC  T C +RG E ++   R ++          D   + E V C GAC
Sbjct: 70  SLIPKG-KYVIRVCDGTACHVRGSEPIMMALRKELGINTEKPTTDDLMFTLETVSCLGAC 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             AP+V+  ++ +  +TP+ + EI+   +
Sbjct: 129 GLAPVVVADEEVHGQMTPDGILEIVRKLA 157


>gi|258651220|ref|YP_003200376.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
           multipartita DSM 44233]
 gi|258554445|gb|ACV77387.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Nakamurella
           multipartita DSM 44233]
          Length = 249

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 7/184 (3%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RR+    F  +   F E +     E+I+RYP SR  SA++PLL   Q  EG VS+  IE 
Sbjct: 6   RRIGVPVFLDTGVVFDELTHGRAAEIIARYPMSR--SALLPLLHLVQSVEGCVSQQGIEF 63

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
            A  L +    V  +ATFYT ++ +P G    V VC    C   G + +      ++   
Sbjct: 64  CAGQLGLTEAEVSAVATFYTMYKRTPCGE-HLVSVCTNALCAALGGDAIYATLSRRLGVG 122

Query: 124 ----PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
                    + G+++ E  EC  AC +AP++ +  + +++ TP+   +++    +G+   
Sbjct: 123 HEQTAGEPGTPGSITLEHAECLAACDHAPVLTVNYEYFDNQTPDSALDLLTGLQSGERPH 182

Query: 180 IRPG 183
              G
Sbjct: 183 PTRG 186


>gi|254167374|ref|ZP_04874226.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
 gi|197623637|gb|EDY36200.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Aciduliprofundum boonei T469]
          Length = 149

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V ++I+++      S ++ +L   Q++ G++   AI+ +A  L M    V + A+FY
Sbjct: 2   EEKVLQIINKHKN--KDSKLLAILHDVQDEFGYIPEDAIKTIAKELGMKKGEVYDAASFY 59

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F+  P G +  V +C    C ++G  K+IE    +   K      DG  +++ VE  G
Sbjct: 60  SFFRFKPEG-KHEVMICDCIVCHIKGSGKIIERIEKEFGVKMGETTKDGKYTFKVVEGLG 118

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEII 169
            C ++P++M+    Y DLTP+++ EI+
Sbjct: 119 HCESSPVMMLDGKIYGDLTPDKVVEIL 145


>gi|172037234|ref|YP_001803735.1| NADH dehydrogenase I subunit E [Cyanothece sp. ATCC 51142]
 gi|171698688|gb|ACB51669.1| probable NADH dehydrogenase I chain E [Cyanothece sp. ATCC 51142]
          Length = 173

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +E VA+ L +   RV  +ATFY  F L P G   
Sbjct: 31  NHYRQDALIEILHKAQEAFGYLEPDVLEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHT 90

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G +K++   + ++  K     +D  +S     C GAC  AP V+   
Sbjct: 91  CV-VCLGTACYVKGSDKILAALQQELGIKSGETTADKQISLLSARCLGACGIAPAVVFDG 149

Query: 155 DTYEDLTPERLEEIIDAFS 173
           +     T E + E I  + 
Sbjct: 150 EVTGKQTAENVLEKIKNWQ 168


>gi|269122187|ref|YP_003310364.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268616065|gb|ACZ10433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 158

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            + A+I +L +AQE  G++ +   E +A+ L+    RV  + +FY+ F + P G    + 
Sbjct: 24  KEEALITVLHKAQEIFGYLPKEVQEFIADKLNEPLARVYGVVSFYSFFTMIPKGD-IAIS 82

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C +RG EK+++  ++++  K    + DG  S + + C GAC  AP+V++    Y
Sbjct: 83  VCLGTACFVRGAEKVLDEFQSRLGIKAGETSPDGKFSLDVLRCIGACGIAPVVLVNGKVY 142

Query: 158 EDLTPERLEEIIDAF 172
           + +    ++ I+  +
Sbjct: 143 KKVEAGEVKNIVSEY 157


>gi|169831498|ref|YP_001717480.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638342|gb|ACA59848.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 155

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 20  EESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            +    ++ ++S     R   S++I +L   Q+  G++ +  +  VA+ L ++   V   
Sbjct: 2   PQQEPLLDRLVSYIEAHRGEPSSLIQVLSHVQQTVGYLPKPVLVEVADKLGLSLTEVYGT 61

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           A+FY  F   P G R  + +C  T C ++G   +      ++  K      D   S + V
Sbjct: 62  ASFYAFFTFRPRG-RHGIALCNGTACYVKGSAAVKVRLEQELGIKAGDTTPDRRFSLDVV 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C G C  AP++ + +D +  + PE++ EI++ + 
Sbjct: 121 RCIGCCALAPVMTVDEDVHAGVEPEKVPEILEQYK 155


>gi|288959750|ref|YP_003450090.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
 gi|288912058|dbj|BAI73546.1| NADH dehydrogenase I chain E [Azospirillum sp. B510]
          Length = 182

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               + A++P+L   QE+ G++   AI ++A  L+++   V  + +FY +F+    G R 
Sbjct: 19  NRHLRGALLPILHALQEEFGYIDEEAIPLLATELNLSRADVHGVVSFYHEFRREKPG-RH 77

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC    C   G   L++  + ++        +DG  + E V C G C  +P VMI +
Sbjct: 78  IIKVCRAEACQSMGANALVDHIKTRLQVDFHGTTADGAFTLEPVFCLGNCALSPAVMIDE 137

Query: 155 DTYEDLTPERLEEIIDAFST 174
           + +  ++P+R + +      
Sbjct: 138 NLHGRVSPDRFDALAAETRA 157


>gi|281358698|ref|ZP_06245175.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281314824|gb|EFA98860.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 170

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              VN+++ +Y     +S +IP+L   Q    ++S+  I  VA  + +   RV  +ATFY
Sbjct: 15  LAAVNKILEKY--DYSESKLIPILQEVQAVYKYLSKDMISYVATSIGVPPSRVYGVATFY 72

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQ 141
             F + P G +  +++C  T C ++    ++     K+        + D   + E V C 
Sbjct: 73  AHFSMQPKG-KYIIKLCDGTACHVKKSHGILNALYEKLKLSGDKRTSDDQLFTIETVSCL 131

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP++++ ++ Y   TPE+  EI+D     +
Sbjct: 132 GACGLAPVMVVNEEVYGQCTPEKAIEIVDRIIAEE 166


>gi|91775075|ref|YP_544831.1| formate dehydrogenase subunit gamma [Methylobacillus flagellatus
           KT]
 gi|91709062|gb|ABE48990.1| formate dehydrogenase gamma subunit [Methylobacillus flagellatus
           KT]
          Length = 156

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +    +   I  +       A++PLL   Q+   ++      ++A  L+++   V  + T
Sbjct: 3   DQMARIQSHIESH--QHMAGALMPLLHAIQDDLSYIPEECYGLIAKALNLSVAEVHGVVT 60

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F+  P G R  +QVC    C   GC  L    ++ +        SDG+++ E V C
Sbjct: 61  FYHHFRTRPPG-RHVLQVCRAESCQAMGCGALESHVKSSLGIDYHETTSDGSITLEPVYC 119

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            G C  +P +M+  + Y  ++P+++E ++ +   
Sbjct: 120 LGNCACSPAIMLDDEIYGRVSPQQVESLLASARR 153


>gi|226355363|ref|YP_002785103.1| NADH dehydrogenase (quinone) subunit E [Deinococcus deserti VCD115]
 gi|226317353|gb|ACO45349.1| putative NADH dehydrogenase (quinone), subunit E (NADH-quinone
           oxidoreductase, subunit E) [Deinococcus deserti VCD115]
          Length = 209

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 16  FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            S+  +    V ++I RYP  P   +SA++PLL   Q  EG++S A +  +  +      
Sbjct: 1   MSYFADKQGLVADIIRRYPDSPQGRRSALMPLLREVQNAEGFISEARMAEIGALCGTTAT 60

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY+ +   P G R H+QVC T  C L G ++L +   +++  +P     DG  
Sbjct: 61  EVRSVLSFYSTYHTVPTG-RHHLQVCSTLMCALAGSDELWDYLVSELDVQPGEVTPDGAF 119

Query: 134 SWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDTI-RPGP 184
           S ++VEC G+C  APM+ +     YE++T  + + ++ A   GQ  T   P P
Sbjct: 120 SVQKVECLGSCGTAPMMQVNDLGYYENVTRTKCDRLLSAMRAGQTPTPDNPVP 172


>gi|163857996|ref|YP_001632294.1| formate dehydrogenase subunit gamma [Bordetella petrii DSM 12804]
 gi|163261724|emb|CAP44026.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           petrii]
          Length = 188

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A++P+L   Q++ G +   A+  +A  L+++   V  + TFY  F+  P G R  ++
Sbjct: 47  QPGALLPILHAVQDELGCIPADAVPAIAEALNLSRAEVHGVLTFYPHFRTEPAG-RHVLE 105

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC    C   G E+L E  R  +       ++DG ++ E V C G C  +P VM+    +
Sbjct: 106 VCRAESCQAMGGERLAEHARETLGCDFHGTSADGAVTLEPVYCLGLCAQSPAVMLDGQPH 165

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRP 182
             +TP++L  ++      Q D  +P
Sbjct: 166 ARVTPDKLGRLLS--RATQSDEAQP 188


>gi|310658967|ref|YP_003936688.1| hyma protein [Clostridium sticklandii DSM 519]
 gi|308825745|emb|CBH21783.1| HymA protein [Clostridium sticklandii]
          Length = 157

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F++E+   ++ VI+++     Q A++P+L  A++  G++S    E ++  LD+    +  
Sbjct: 6   FTQENFARLDLVIAQHKGE--QGALMPVLYEAKKIFGFISIDIQERISKGLDIPLSEIYG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A+FY+ F     G    + VC  T C ++G +K+I+    K++ +     SDG  S   
Sbjct: 64  VASFYSTFSDKQKGE-NIIAVCLGTACYVKGSQKIIDKISKKLNIEVGDTTSDGKFSLVP 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP+V I  D Y     + ++ I+  +
Sbjct: 123 ARCVGACSLAPVVTINADVYGKAKLDDIDSILSNY 157


>gi|326790678|ref|YP_004308499.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541442|gb|ADZ83301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
          Length = 158

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +++++ R       S++I +L   QE   ++       ++  L M+  ++  +ATFY  
Sbjct: 9   ELDQILER--NGLEPSSIISILQDIQEIYRYIPEEIFPYLSEKLGMSTAKIYGVATFYEN 66

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143
           F L P G +  +++C  T C +R    ++   R  +          D   + E V C GA
Sbjct: 67  FSLEPKG-KYVIKICDGTACHVRKSIPILNALRETLSLSEEKVTTDDLLFTVETVSCLGA 125

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP++ I    Y  +TPE+ + ++     
Sbjct: 126 CGLAPVMTINDKVYGSMTPEKAKALLSELRE 156


>gi|253997400|ref|YP_003049464.1| formate dehydrogenase subunit gamma [Methylotenera mobilis JLW8]
 gi|253984079|gb|ACT48937.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera
           mobilis JLW8]
          Length = 160

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E++   ++ +I+ +       A++PLL   Q+  G+V  AA   ++  L ++   V  + 
Sbjct: 9   EDTDAVISRLIAEH--QHRPGALMPLLHAIQDNIGYVPEAAYPQISKALALSVAEVHGVV 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+    G R  +Q+C    C   G E L    +  ++       +D  ++ E V 
Sbjct: 67  TFYHHFRTHKPG-RNVMQICRAESCQAMGSEALEAHAKKCLNIDYHQTTADDAVTLEAVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P VM+  + Y  ++P  L+ +I     
Sbjct: 126 CLGNCALSPSVMMNDEIYGRVSPSDLDALIAEARA 160


>gi|51892728|ref|YP_075419.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
           14863]
 gi|51856417|dbj|BAD40575.1| NADH dehydrogenase I subunit E [Symbiobacterium thermophilum IAM
           14863]
          Length = 274

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLE 77
           E     V  ++ RYP  R +SA++PLL  A  +    +++++ IE VA I  +A   V  
Sbjct: 12  ETCKDEVEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQS 71

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           + +FYT F+  PVG +  + VCG   C L  G  +L+E     +  K      DG ++ E
Sbjct: 72  VCSFYTMFRRQPVG-KYLITVCGNMACHLLAGGSQLVEHMEKTLGIKVGETTPDGLITLE 130

Query: 137 EV-ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
              EC  AC  AP++ +  +    +T E+ + ++ A   G+G 
Sbjct: 131 VTGECLAACDLAPVIHVDTEYVVKVTREKFDALVAALRAGEGP 173


>gi|158320024|ref|YP_001512531.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158140223|gb|ABW18535.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 158

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    +++++ +Y      S++I +L   Q    ++   A++ VA  +DM+  R+  
Sbjct: 2   LTVDMKDRIDQILMKY--GNNPSSIITMLQEIQGVYRYLPEEALDYVAASMDMSASRIFG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK-PLHRNSDGTLSWE 136
           IATFY  F L P G +  +++C  T C +R    ++     ++     +H   D   + E
Sbjct: 60  IATFYENFSLKPKG-KFIIKICDGTACHVRKSIPILNTLYKELSLNSEMHTTEDLMFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            V C GAC  AP++ +    Y  +TPE   E+++    
Sbjct: 119 TVSCLGACGLAPVITVNDKVYGKMTPESTVELLNTLRE 156


>gi|257453970|ref|ZP_05619246.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
           SK60]
 gi|257448635|gb|EEV23602.1| NADH-quinone oxidoreductase subunit e [Enhydrobacter aerosaccus
           SK60]
          Length = 169

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E     ++E +  YP SR  +A +  L   Q + GWV  A +  +ANIL +    V  
Sbjct: 17  LTEAEIHDIHEFMHHYPQSR--AASLDALKIVQRRNGWVDDAQVNAIANILKIPVTDVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +   SPVG R  + VC +  C L G E L +     +         D   +   
Sbjct: 75  VATFYNRIYRSPVG-RHVILVCDSIGCYLVGAENLGQAFERTLGISFGQTTPDNRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C   P V+I +DTY  +  E + E+++ ++
Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQIEEIAELLEQYA 169


>gi|220929713|ref|YP_002506622.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|220000041|gb|ACL76642.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 157

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ V+S+Y     +S +I +L   Q +  ++    ++ VA  LD+   ++  +ATFY  F
Sbjct: 9   VDGVLSKY--DNHKSHLIAVLQEIQNEYKYLPEDVLKYVAEKLDINLSKIFSVATFYENF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
            L P G +  ++VC  T C +R    ++   R ++      H   D   + E V C GAC
Sbjct: 67  SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSDNKHTTDDMLFTVETVSCLGAC 125

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             AP++ I    +  +TP+   E+I    +
Sbjct: 126 GLAPVITINDKVHAKMTPDSTIELIKTLRS 155


>gi|270308167|ref|YP_003330225.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
           [Dehalococcoides sp. VS]
 gi|270154059|gb|ACZ61897.1| hydrogenase subunit, NADH dehydrogenase subunit F subfamily
           [Dehalococcoides sp. VS]
          Length = 161

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 19  SEE--SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + E      ++ ++  Y        +I +L++ Q++  W+ + A+  V+  L++   RV 
Sbjct: 8   TPEVIDLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFY  F + P G +  V VC  T C + G  K+++     +  K      D   S E
Sbjct: 66  HVATFYKLFSVIPKG-KHTVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            V C G C   P+V++    +  L     E+I+  +
Sbjct: 125 TVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160


>gi|93005406|ref|YP_579843.1| NADH dehydrogenase subunit E [Psychrobacter cryohalolentis K5]
 gi|92393084|gb|ABE74359.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter
           cryohalolentis K5]
          Length = 169

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    ++E +  YP    ++A +  L   Q++ GWV  A +  +ANIL++    +  
Sbjct: 17  LTAEEIAAIHEFMHHYP--HPRAASLDSLKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L    ++++        +DG  +   
Sbjct: 75  VATFFNRIYRQPVG-RHVILVCDSVACYLTGYEALAAELKSQLGINYGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C   P V+I +DTY  + PE + ++++ ++
Sbjct: 134 ICCLGNCDKGPAVLIDEDTYGPVQPEEVAQLLELYA 169


>gi|320160243|ref|YP_004173467.1| NADH-quinone oxidoreductase subunit E [Anaerolinea thermophila
           UNI-1]
 gi|319994096|dbj|BAJ62867.1| NADH-quinone oxidoreductase chain E [Anaerolinea thermophila UNI-1]
          Length = 173

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V +++++YP    +SAV+PLL  AQ +EG+V R A+E +A IL+M+   V  I  FYT
Sbjct: 10  EEVKQILAKYPAEYKRSAVMPLLYLAQRKEGYVPRQALEDIAEILEMSPTEVASIVGFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +   P G R H+QVC   PC LRG +K +E    ++  +      DG  + E V+C  A
Sbjct: 70  LYYDQPAG-RYHIQVCTDLPCALRGADKFLEELCQRLGIREGETTPDGLFTVEAVKCLAA 128

Query: 144 CVNAPMVMIGKD----TYEDLTPERLEEIIDAFST 174
           C  AP+  +  D     +E+ T E     ++    
Sbjct: 129 CHRAPVFQVQGDGEIEYHENQTVELTLAWMEQVRE 163


>gi|225572044|ref|ZP_03780908.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040479|gb|EEG50725.1| hypothetical protein RUMHYD_00338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 168

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           Q       +      +E+I  Y   R +S++IP++   Q +  ++    +  VA  + + 
Sbjct: 5   QGGKRMLDQSYYKKADEIIEEY--GRKESSLIPIMQDIQAEYRYLPGELLTYVAKEIGVK 62

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSD 130
             +   +ATFY  F   P G +  ++VC  T C +R    + E    ++      H   D
Sbjct: 63  EAKAYSVATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSHKKHTTDD 121

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
              + E V C GAC  AP + +    +  ++PE+  E+++     +
Sbjct: 122 MMFTVETVSCLGACGLAPALNVNDVVHPKMSPEKALEMLEELRGEK 167


>gi|268591138|ref|ZP_06125359.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
 gi|291313364|gb|EFE53817.1| NADH dehydrogenase I, E subunit [Providencia rettgeri DSM 1131]
          Length = 183

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E      F  +E+    +      Y  +R  +A I  L   Q+  GWV   AI  +A++L
Sbjct: 22  EPQVNHGFVLTEKEREEIEGEKHHYEDAR--AASIEALKIVQKNRGWVEDGAIHAIADVL 79

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +    V  +ATFY+Q    PVG R  ++ C +  C + G + L      +++ +P    
Sbjct: 80  GIPASDVEGVATFYSQIFRQPVG-RHIIRYCDSVVCHITGYQGLEAEIIKQLNIRPGQTT 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           +DG  +     C G C   P +MI  DT+  + PE ++++++ +
Sbjct: 139 ADGRFTLLPTCCLGNCDKGPTMMIDDDTHSYVQPENIQKLLEQY 182


>gi|169832067|ref|YP_001718049.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638911|gb|ACA60417.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 184

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  E + + ++++I RY        +I +L +AQE  G++SR     VA  + +    V
Sbjct: 1   MNVEERNYLVLDKIIERYGD--RPGGLIRVLYKAQELFGYLSRDVQTHVAEKMCLPVGHV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF  +P G +  V+VC  T C ++  + ++   R  +  +P    +DG  + 
Sbjct: 59  HGVATFYSQFVTAPQG-KNVVRVCMGTACYVKNAQDILNRFRELLGVEPDETTADGLFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS-TGQGDTIRPG------PQIDR 188
               C GAC  AP++ + +  +  L+   +  ++D +   G  + + P       P  D+
Sbjct: 118 RTTRCIGACSLAPLLTVNESVHGHLSVYDVARLVDRYRKEGPDEEVSPVEHKRQRPARDQ 177

Query: 189 ISSAPAG 195
            ++ P  
Sbjct: 178 RAAPPPN 184


>gi|77464659|ref|YP_354163.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides 2.4.1]
 gi|332559553|ref|ZP_08413875.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
 gi|77389077|gb|ABA80262.1| NAD-dependent formate dehydrogenase, gamma subunit (24 kDa)
           [Rhodobacter sphaeroides 2.4.1]
 gi|332277265|gb|EGJ22580.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides WS8N]
          Length = 157

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    V++++  +     +  ++P+L   QE  G V   ++  +A  L+++   V  + 
Sbjct: 6   AEVHARVDDILDAHEG--LEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G ++L E  + ++        +DG ++ E V 
Sbjct: 64  SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C   P  ++       +   RLE I++    
Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157


>gi|94309498|ref|YP_582708.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cupriavidus
           metallidurans CH34]
 gi|93353350|gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
           metallidurans CH34]
          Length = 169

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
             A++P+L   Q+ +G++   A+ VVA  L+++   V  + TFY  F+  P G R  VQV
Sbjct: 29  PGALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHFRERPAG-RTVVQV 87

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L    R  +        +DG  + E V C G C   P + IG   + 
Sbjct: 88  CRAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMTIGDRLHG 147

Query: 159 DLTPERLEEIIDAFSTGQ 176
            +  +R +++IDA    +
Sbjct: 148 RVDMQRFDKLIDAVRERE 165


>gi|253577814|ref|ZP_04855086.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850132|gb|EES78090.1| NADH dehydrogenase subunit E [Ruminococcus sp. 5_1_39BFAA]
          Length = 159

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I  Y   R  +++IP++   Q +  ++    +  VA  + +   +   
Sbjct: 2   LDQSYYRKADEIIEHY--GRTAASLIPIMQDIQAEYRYLPGELLTYVAKEIGVKEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    + E    ++      H   D   + E
Sbjct: 60  VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP + +  + +  +TPE+  E+++   
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAVELLNKLR 155


>gi|51894342|ref|YP_077033.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858031|dbj|BAD42189.1| putative iron hydrogenase small subunit gamma [Symbiobacterium
           thermophilum IAM 14863]
          Length = 186

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 24  IWVNEVISRYPPSRCQSA--VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
             ++  I         SA  +I +L +AQE  G++       VA  L +    V  + TF
Sbjct: 18  AELDAFI----QDGRSSADHLIAVLHKAQEIFGFLPEEVQRHVAAALHVPPSEVYGVVTF 73

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F L+PVG +  + VC  T C ++G  +L+ +   ++  +P     DG  S E   C 
Sbjct: 74  YNYFTLTPVG-KYPINVCMGTACYVQGAGRLLSLFERELGIQPGQVTPDGLFSLEVCRCL 132

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP+V +  + +  LT     +++    
Sbjct: 133 GACGLAPVVTVAGEVHGKLTESDALKLVAELR 164


>gi|300114496|ref|YP_003761071.1| NADH-quinone oxidoreductase subunit E [Nitrosococcus watsonii
           C-113]
 gi|299540433|gb|ADJ28750.1| NADH-quinone oxidoreductase, E subunit [Nitrosococcus watsonii
           C-113]
          Length = 154

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    ++   S YP ++     I  +   Q   GW+S  ++  +A+ L ++   +  
Sbjct: 2   LSAEEIKAIDAERSHYPTAQAVG--IEAMKIVQHHRGWISDESLREIADHLGLSVESLDG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            ATFY      PVG +  + +C +  C + G E+L E  + ++         DG  +   
Sbjct: 60  AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQKELKIGLGETTQDGRFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++++ +D + DL  E++ EI+  +
Sbjct: 119 SCCLGACERAPVMIVDEDLHGDLDSEKIGEILADY 153


>gi|57234358|ref|YP_181589.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
           195]
 gi|57224806|gb|AAW39863.1| hydrogenase subunit HymA, putative [Dehalococcoides ethenogenes
           195]
          Length = 161

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++ ++  Y        +I +L++ Q++  W+ + A+  V+  L++   RV  +ATF
Sbjct: 13  DLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQALNVPVNRVYHVATF 70

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F + P G + +V VC  T C + G  K+++     +  K      D   S E V C 
Sbjct: 71  YKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTPDLKFSLETVNCL 129

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P+V++    +  L     E+I+  +
Sbjct: 130 GCCALGPVVVVDGHYHGKLPTADAEKILADY 160


>gi|254520091|ref|ZP_05132147.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226913840|gb|EEH99041.1| NADH dehydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 173

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S++I +L  AQ   G++ R   E +A  L++   +V  + TFY+ F   P G +  + +
Sbjct: 37  ESSLISVLHHAQGLYGYLGREVQEYIAYRLNIPVSKVYGVITFYSYFSTEPKG-KYVISI 95

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C +RG   ++E  +  +  K     +DG  + + + C G+C  AP+V++    Y 
Sbjct: 96  CTGTACFVRGACDILEDFKKILGIKEGETTNDGLFTLDTLRCVGSCAIAPVVLVNDKVYG 155

Query: 159 DLTPERLEEIIDAFST 174
             T  ++ E+I+    
Sbjct: 156 YFTKPQVNELINNLRE 171


>gi|221640573|ref|YP_002526835.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides KD131]
 gi|221161354|gb|ACM02334.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides KD131]
          Length = 155

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    V++++  +     +  ++P+L   QE  G V   ++  +A  L+++   V  + 
Sbjct: 4   AEVHARVDDILDAHEG--LEGPLLPILHAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G ++L E  + ++        +DG ++ E V 
Sbjct: 62  SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C   P  ++       +   RLE I++    
Sbjct: 121 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 155


>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 574

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRVLE 77
           +E+    ++ ++ RYP    QSA++P LM AQ++    + +  I  VA ++D+ + +   
Sbjct: 3   TEQLKNDIHRLLGRYPE--KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYG 60

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +AT+Y+ + +     R H+QV    P  L G  ++++     ++ +      DG  +  E
Sbjct: 61  LATYYSMYNVEKPVGRYHLQVDTNIPATLMGAGEILDHLEKTLNIRAGETTPDGLFTLSE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           VEC  +C   P++ +    YE++T E+++ ++D+   G
Sbjct: 121 VECLASCGTCPVIQVNDVYYENMTREKVDSLLDSLRKG 158


>gi|145298720|ref|YP_001141561.1| NADH dehydrogenase subunit E [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851492|gb|ABO89813.1| NADH dehydrogenase I, E subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 188

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
                     F  S+     +      Y   R  +A I  L   Q+  GWV   AI  +A
Sbjct: 24  DGPVPGPTDGFVLSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIYAIA 81

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L +    V  +ATFY+Q    PVG R  ++VC +  C + G E L+   +  +   P 
Sbjct: 82  TELGIPASDVEGVATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEGLLAGLKEVMDLAPG 140

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             ++DG  +   V C G C   P +MI  DTY  L    L + ++A+
Sbjct: 141 QTSADGRFTLLPVCCLGNCDKGPALMIDDDTYGGLDAATLIKTLEAY 187


>gi|108760187|ref|YP_629346.1| NADH dehydrogenase I subunit E [Myxococcus xanthus DK 1622]
 gi|108464067|gb|ABF89252.1| NADH dehydrogenase I, E subunit [Myxococcus xanthus DK 1622]
          Length = 162

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 18  FSEESAIWVN----EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           F+ E     +    E+IS YPP R  + ++P L   QE +GW+    + +VA  L++   
Sbjct: 6   FTSEEQKKFDAGIAEIISHYPPDRKSAGMLPALRLLQEIKGWLPPEGLRLVAKHLEVTPE 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           R +E+A+FY  + L   G +  + VC    C L G EK++     K+  K    N     
Sbjct: 66  RAMEVASFYVMYHLKKPG-KYVIDVCTNLSCSLWGAEKMLAYLEEKLGLKAGEANE--KF 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +  E EC  +C  AP + I +D +E LT  +L+ I+   S
Sbjct: 123 TLRETECLASCGTAPCLQINEDHHESLTQAKLDAILAKLS 162


>gi|87120637|ref|ZP_01076531.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Marinomonas sp.
           MED121]
 gi|86164280|gb|EAQ65551.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Marinomonas sp.
           MED121]
          Length = 189

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 3/156 (1%)

Query: 21  ESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            +   +  V+ R           ++P+L   Q Q G+V  +++ ++   L+++   V  +
Sbjct: 22  ANQAEIESVVGRILVELKDIPGPLLPILHEVQHQLGYVPDSSLPIIGKALNISRAEVHGV 81

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  F   P G R  ++VC    C   G   L    ++ +         D  ++ E V
Sbjct: 82  VTFYHHFSSKPRG-RHIIEVCRAESCQSMGGRDLEAHAKSALGLDWYQTTMDKEITLEPV 140

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C G C  +P + +G + Y  +  E+ +EI+D   T
Sbjct: 141 FCLGNCACSPAIRVGDEVYGRMDAEQFDEIVDELRT 176


>gi|156741349|ref|YP_001431478.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus
           castenholzii DSM 13941]
 gi|156232677|gb|ABU57460.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 173

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+V R      + +S    +     +   + ++       A+I +L RAQE  G++S   
Sbjct: 1   MAVTRSQPPVSEQASHPSGDNRFKLLEATMKKH--QYRPDALIEVLHRAQELFGYLSNDL 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +AN L +   RV  +ATFY  F L+P G  + V VC  T C +RG   ++      +
Sbjct: 59  LLYIANSLHLPPSRVYGVATFYHFFSLAPKGEHSCV-VCLGTACYVRGAAAILAAAEQTL 117

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             +  H   DG LS E   C GAC  AP V+         TPE+++  ++    
Sbjct: 118 GIRAGHTTPDGRLSLETARCLGACGIAPTVVFDGAITGHQTPEQVQVWLERLKE 171


>gi|326204153|ref|ZP_08194013.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325985664|gb|EGD46500.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 163

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIAT 80
              V E+++RY  S+    +I +++  Q   G   +    +  VA  LDM   RV  + T
Sbjct: 8   MEKVKEILNRYGNSK--DNLIQVMLELQNISGTNSLPHDWVVFVAEALDMPVSRVYSVIT 65

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+ F   P G +  V+VC + PC + G + ++++   K+  KP     DG  +  +  C
Sbjct: 66  FYSMFGNEPRG-KYLVEVCKSGPCHVSGAKTVLQLIEEKLGLKPGETTEDGVFTLIQSSC 124

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            GAC  AP + IG+  Y +LT E+L EI+D++  GQ +
Sbjct: 125 FGACDIAPAIKIGEKVYGNLTAEKLTEIVDSYREGQHN 162


>gi|301063637|ref|ZP_07204151.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300442285|gb|EFK06536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 175

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
              +  +I +L   Q    ++ +  +  +A  + +   R+  +ATFY+ F L P G +  
Sbjct: 31  GNDKENLIMILQAIQAAYNYLPQPVLAYLAEKIGIPLSRIYGVATFYSTFSLEPRG-KNI 89

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  T C +RG  K+++   + +H        DG  + E V C G C   P+V I +D
Sbjct: 90  INICLGTACHVRGAGKVLQRIEDTLHVDNGKTTEDGQFTLESVRCIGCCSLGPVVKINED 149

Query: 156 TYEDLTPERLEEIIDAF 172
            Y  +  E L++I+D +
Sbjct: 150 VYGRIGSEDLDKILDHY 166


>gi|113866667|ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
 gi|113525443|emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
          Length = 176

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             A  +  +++         A++P+L   Q+ +G++  AA+ V+A  L+++   V  + T
Sbjct: 12  ADATRIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVIT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F+  P G R  VQVC    C   G E L E  +  +        +DG ++ E V C
Sbjct: 70  FYHHFRQQPAG-RHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYC 128

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            G C   P VM+G+  +  +   R + ++ +      + 
Sbjct: 129 LGQCACGPAVMVGEQLHGYVDARRFDALVRSLRESSAEK 167


>gi|323702071|ref|ZP_08113739.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532953|gb|EGB22824.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 162

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V ++I  +      + +I +L   Q + G++ +  +  +A  L ++   VL +ATFY Q
Sbjct: 10  KVQQIIDAHEG--KVAHLIAILQETQAEYGYLPKEILTYIATALGVSPATVLGVATFYAQ 67

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143
           F L P G +  ++VC  T C +RG E ++   R ++   P +    D   + E V C GA
Sbjct: 68  FSLIPKG-KYVIRVCDGTACHVRGSEPIMMAIRKELGISPDNPTTDDLMFTVETVSCLGA 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C  AP+V+  ++ +  +TP+ + EII+  +
Sbjct: 127 CGLAPVVVAHEEVHGQMTPQGIVEIINKLA 156


>gi|288818980|ref|YP_003433328.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288788380|dbj|BAI70127.1| NAD-dependent formate dehydrogenase gamma subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752565|gb|ADO46048.1| formate dehydrogenase gamma subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 153

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E IS+    +   A+IP+L   QE++G++    ++++++ L+++   V  + TFY+ F+L
Sbjct: 8   EEISKLKSKKN--ALIPILHIIQERQGYIPEYTVDLLSSELNLSKAEVWGVITFYSDFRL 65

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G +  ++VC +  C+  G  K+ E  +  +         DG  + E V C G C  A
Sbjct: 66  KPPG-KHIIKVCRSEACLAMGGRKVQEHIKCILGIDFGQTTHDGIFTLEGVYCFGNCACA 124

Query: 148 PMVMIGKDTYEDLTPERLEEIID 170
           P VM+    Y    PER++ I++
Sbjct: 125 PSVMVDGKLYGRAFPERIDMIME 147


>gi|302337011|ref|YP_003802217.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634196|gb|ADK79623.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 162

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E     N +I  +  +R   A+IP+L  AQ   G++ +  ++ ++  L + Y  V  + 
Sbjct: 7   KEMIDQTNAIIDSFLDTR--GALIPVLQNAQNLFGYLDQEVLKQISRRLQIPYSEVAGVV 64

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FY+ F   P G    V+VC  T C +RG ++++   ++ +         D   S E   
Sbjct: 65  GFYSYFSTVPRGE-HIVRVCLGTACYVRGGKEVLSALQDVLGIDVGETTEDRVFSLEIGR 123

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           C GAC  +P+VMI +D ++ + P  + +I+  + T + 
Sbjct: 124 CFGACGLSPVVMIDEDVHQRVKPATVRDILFPYRTKEA 161


>gi|134096581|ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG
           [Herminiimonas arsenicoxydans]
 gi|133740484|emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V  +I+         A++P+L   Q   G++    +  +A+ L+++   V  + T+
Sbjct: 8   DMAAVESIIASRKE--MPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVHGVITY 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G +  +Q+C    C  RGCE L++  +  +         DG  S E V C 
Sbjct: 66  YHFFRQHPAG-KHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEVVYCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C + P + I  D Y  ++ E+   +I A
Sbjct: 125 GQCASGPAIQIDDDLYARVSKEKFNNLIQA 154


>gi|303245640|ref|ZP_07331923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|466363|gb|AAA87054.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
 gi|302492903|gb|EFL52768.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 171

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           + +  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G +  +
Sbjct: 37  QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KYPI 95

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            VC  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  
Sbjct: 96  SVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGEKV 155

Query: 157 YEDLTPERLEEIIDAF 172
           Y ++TP ++++I+  +
Sbjct: 156 YGNVTPGQVKKILAEY 171


>gi|291549369|emb|CBL25631.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus torques
           L2-14]
          Length = 159

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +E+I++Y       ++IP++   QE+  ++    +  VA  L ++  +   +A+FY
Sbjct: 7   YEKTDEIIAQYTCEEK--SLIPIIQGIQEEYRYLPPELLTYVAEKLGISEAKAYSVASFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
             F     G +  ++VC  T C +R    ++E    ++   K  H   D   + E V C 
Sbjct: 65  ENFSFEAKG-KYVIKVCDGTACHVRKSIPILEGLYKELGLGKKKHTTDDQLFTVETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP VM+  + +  +TPE++ E+I      +
Sbjct: 124 GACGLAPAVMVNDEVHPKMTPEKMSELIKKLREEE 158


>gi|332296986|ref|YP_004438908.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
           brennaborense DSM 12168]
 gi|332180089|gb|AEE15777.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Treponema
           brennaborense DSM 12168]
          Length = 160

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           FS E   +++E             +I +L + QE++G++S+ A + VA   +    RV  
Sbjct: 9   FSPELNAFIDEW------KVKPGNLIMILHKVQEEQGFISKEAAQAVAERTNSPLARVYG 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWE 136
           + TFY  F+    G +  V VC  T C L+G + LI+  R+ +  K       DG  S E
Sbjct: 63  VMTFYHFFKTQKPG-KNKVSVCLGTACYLKGGQDLIDEARSILGLKAEDISTEDGLFSVE 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            V C G C  AP++ +  D Y  LT  ++  I+D +   
Sbjct: 122 PVRCIGCCGLAPVLSVNGDVYGKLTKNQIAGILDKYRNA 160


>gi|17228246|ref|NP_484794.1| bidirectional hydrogenase complex protein HoxE [Nostoc sp. PCC
           7120]
 gi|17130096|dbj|BAB72708.1| NADH dehydrogenase I chain E [Nostoc sp. PCC 7120]
          Length = 164

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++  I R+     Q A+I +L +AQE  G++    +  +A+ L +   RV  +A
Sbjct: 14  DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P G  + V VC  T C ++G   ++               +DG LS     
Sbjct: 72  TFYHLFSLAPQGVHSCV-VCTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTAR 130

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
           C GAC  AP V+       + TPE + E
Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVNE 158


>gi|153812807|ref|ZP_01965475.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
 gi|149831167|gb|EDM86256.1| hypothetical protein RUMOBE_03214 [Ruminococcus obeum ATCC 29174]
          Length = 159

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I  Y P    +++IP++   Q +  ++    +  VA+ + +   +   
Sbjct: 2   LDQSYYAKTDEIIEHYGP--KPASLIPIMQDIQAEYRYLPGELLTYVASKIGVTEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    + E    ++      H   D   + E
Sbjct: 60  VATFYENFSFEPKG-KYVIKVCDGTACHVRKSMPVKEALMKELGLSNKKHTTDDMLFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP + +  + +  +TPE+  ++++   
Sbjct: 119 TVSCLGACGLAPTLTVNDEVHPKMTPEKAIDLLNELR 155


>gi|325972138|ref|YP_004248329.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
 gi|324027376|gb|ADY14135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
          Length = 157

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
             + F+FS     ++ E  ++         +I +L + Q+++G++SR A ++VA  LD+ 
Sbjct: 3   DNNEFTFSPALVSFIKEWKTK------PGNLIMVLHKVQQEQGYISREAADLVAAQLDVP 56

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  + +FY  F+L+  G + ++QVC  T C L+G + LI+    ++H        DG
Sbjct: 57  LATIWGVVSFYHFFKLTKPG-KHNIQVCLGTACYLKGAQPLIDEIDKQLHLPVGAVTEDG 115

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             S + V C G C  AP++ +G + +  +T +++  II  F 
Sbjct: 116 NFSLDAVRCVGCCGLAPVMTVGGEVFGKVTKDQISGIIAKFR 157


>gi|75910849|ref|YP_325145.1| bidirectional hydrogenase complex protein HoxE [Anabaena variabilis
           ATCC 29413]
 gi|75704574|gb|ABA24250.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Anabaena variabilis ATCC 29413]
          Length = 164

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++  I R+     Q A+I +L +AQE  G++    +  +A+ L +   RV  +A
Sbjct: 14  DKRLKMLDAAIKRH--QYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVA 71

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P G  + V VC  T C ++G + ++               +DG LS     
Sbjct: 72  TFYHLFSLAPQGVHSCV-VCTGTACYVKGAQAILTDLEKSTRIHAGETTADGQLSLLTAR 130

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
           C GAC  AP V+       + TPE + E
Sbjct: 131 CLGACGIAPAVVFDGKVLGNQTPESVSE 158


>gi|71065154|ref|YP_263881.1| NADH dehydrogenase subunit E [Psychrobacter arcticus 273-4]
 gi|71038139|gb|AAZ18447.1| NADH dehydrogenase I, E subunit [Psychrobacter arcticus 273-4]
          Length = 169

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    ++E +  YP    ++A +  L   Q++ GWV  A +  +ANIL++    +  
Sbjct: 17  LTAEEIAAIHEFMHHYP--HPRAASLDALKIVQKRNGWVDDAQVNAIANILNVPMTDMDG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + +C +  C L G E L    + ++        +D   +   
Sbjct: 75  VATFFNRIYRQPVG-RHVILICDSVACYLTGYEALAAELKAQLGIDYGQTTADKRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C G C   P V+I +DTY  + PE + ++++ ++
Sbjct: 134 ICCLGNCDKGPAVLINEDTYGPVQPEEVAQLLELYA 169


>gi|73748665|ref|YP_307904.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
 gi|289432691|ref|YP_003462564.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660381|emb|CAI82988.1| hydrogenase subunit HymA [Dehalococcoides sp. CBDB1]
 gi|288946411|gb|ADC74108.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 161

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           E   P     S      ++ ++  Y        +I +L++ Q++  W+ + A+  V+  L
Sbjct: 5   ESKSPEVIDLS-----KLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTL 57

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++   RV  +ATFY  F + P G + +V VC  T C + G  K+++     +  K     
Sbjct: 58  NVPVNRVYHVATFYKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETT 116

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           SD   S E V C G C   P+V++    +  L     E+I+  +
Sbjct: 117 SDLKFSLETVNCLGCCALGPVVVVDGHYHGKLPTADAEKILADY 160


>gi|15606025|ref|NP_213402.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
 gi|6647652|sp|O66842|NUOE_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|2983200|gb|AAC06799.1| NADH dehydrogenase I chain E [Aquifex aeolicus VF5]
          Length = 160

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           + F F EE    + E I+ +P  R   A++  L   Q   G++   +++ +A++L++   
Sbjct: 4   TEFEFPEELKTKLQEHINYFPKKRQ--AILLCLHEIQNYYGYIPPESLKPLADMLELPLN 61

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +  FY  F       +  ++VC +  C L G  KL++   N +  KP     DG  
Sbjct: 62  HVEGVVAFYDMFDREDK-AKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKF 120

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               V+C GAC  AP+ M+  D Y+  +  +L EI+  +
Sbjct: 121 KIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRY 159


>gi|148657646|ref|YP_001277851.1| bidirectional hydrogenase complex protein HoxE [Roseiflexus sp.
           RS-1]
 gi|148569756|gb|ABQ91901.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Roseiflexus sp.
           RS-1]
          Length = 178

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +   + ++       A+I +L RAQE  G++S   +  +AN L +   RV  +ATFY 
Sbjct: 24  KLLEATMKKH--QYRPDALIEVLHRAQELFGYLSTDLLLFIANSLHLPPSRVYGVATFYH 81

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F L+P G  + V VC  T C +RG   ++      +  K  H   DG LS E   C GA
Sbjct: 82  FFSLAPKGEHSCV-VCLGTACYVRGAAAILAAAEQMLGIKAGHTTPDGRLSLETARCLGA 140

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           C  AP V+         TPE+++  ++   TG+G   +
Sbjct: 141 CGIAPTVVFDGTVTGHQTPEQVQVWLERL-TGEGLKAK 177


>gi|147669424|ref|YP_001214242.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|146270372|gb|ABQ17364.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
          Length = 161

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++ ++  Y        +I +L++ Q++  W+ + A+  V+  L++   RV  +ATF
Sbjct: 13  DLSKLDNILDGYRD--KADMLIQVLLKIQKEYNWLPKEALYKVSQTLNVPVNRVYHVATF 70

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F + P G + +V VC  T C + G  K+++     +  K     SD   S E V C 
Sbjct: 71  YKLFSVIPKG-KHNVSVCVGTACHVFGAPKILDRLEKSLGIKAGETTSDLKFSLETVNCL 129

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P+V++    +  L     E+I+  +
Sbjct: 130 GCCALGPVVVVDGHYHGKLPTADAEKILADY 160


>gi|255524300|ref|ZP_05391258.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296185257|ref|ZP_06853667.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255511983|gb|EET88265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296050091|gb|EFG89515.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 160

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
               E    ++  I        + ++I +L  AQ+  G++       +AN LD++  +V 
Sbjct: 5   KLDNEKLKELSSYIDNLEE--KEGSLINVLHEAQDMFGYLPEELQIFIANKLDISAAKVF 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+ F + P G +  + +C  T C ++G E ++E  R +++ K      DG  + +
Sbjct: 63  GVVTFYSYFTIEPRG-KHVISICMGTACFVKGAENVLEEFRKELNIKDGFSTEDGLFTID 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + C GAC  AP+V+I    Y  +  E ++ I+  ++ 
Sbjct: 122 ILRCVGACGLAPVVVIDGMVYGKVKVEDVKGILSQYTE 159


>gi|270308047|ref|YP_003330105.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
 gi|270153939|gb|ACZ61777.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
          Length = 157

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V +++++Y  ++ +  ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  
Sbjct: 12  KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G +  + VC  T C +RG  K+++    K+         D   S + V C GAC
Sbjct: 70  FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              P+V++      ++T E+++ +I+   
Sbjct: 129 ALGPVVVVDGQYMGNMTTEKVKPLIEGCQ 157


>gi|257053165|ref|YP_003130998.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256691928|gb|ACV12265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 186

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    V EV+   P ++    VIP L   QE+ G++ +  +E++A     +   V   A
Sbjct: 36  DDEIETVREVLVDVPTAKE--GVIPALQDVQEEYGYLPKFTMELIAEHTGTSIAHVYGTA 93

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY+QF + P G    ++VC  T C ++G +++ E   +++         DG  + + V 
Sbjct: 94  SFYSQFHMEPRGD-HTIKVCTGTACHVKGADEVSEAFCDELDVDLQDVTDDGKFTVDHVR 152

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  A  VM+G + Y D+ P+ ++++I+ + 
Sbjct: 153 CIGACSLAVAVMVGDEVYGDVQPDEVDQVIEEYR 186


>gi|3724143|emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia
           eutropha H16]
          Length = 176

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             A  +  +++         A++P+L   Q+ +G++  AA+ V+A  L+++   V  + T
Sbjct: 12  ADATRIAAIVAA--RQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVIT 69

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F+  P G R  VQVC    C   G E L E  +  +        +DG ++ E V C
Sbjct: 70  FYHHFRQQPAG-RHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYC 128

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            G C   P VM+G+  +  +   R + ++ +      + 
Sbjct: 129 LGQCACGPAVMVGEQLHGYVDARRFDALVRSLRESSAEK 167


>gi|150388473|ref|YP_001318522.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149948335|gb|ABR46863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 169

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L E+E         +E    +   I   P    +  +I +L +AQ+  G++ R     VA
Sbjct: 5   LKEQERNDLEKPLPKEKYQELEAYIDDLPS--LEGRLIQILHKAQQIFGYLPRDIQLFVA 62

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L ++  +V  + TFY+ F   P G    + VC  T C ++G  K+IE   ++++ K  
Sbjct: 63  RRLGISGAKVNGVITFYSYFTQEPRGE-HTINVCTGTACFVKGIGKIIEELESQLNIKLG 121

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               D   + ++V C GAC  AP++++ +  Y  + PE +E+I+  +
Sbjct: 122 KTTEDMKFTLKDVRCVGACGLAPLIVVDEKVYGRVKPEDVEKIMSEY 168


>gi|283853100|ref|ZP_06370355.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283571498|gb|EFC19503.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 171

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           + Q  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G +  +
Sbjct: 37  QKQGHLVTVLHKAQSVFGYLPIEVQQFVADYMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            VC  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  
Sbjct: 96  SVCMGTACFVKGADKVVRAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155

Query: 157 YEDLTPERLEEIIDAF 172
           Y ++T  ++++I+  +
Sbjct: 156 YGNVTAGQVKKILADY 171


>gi|134299510|ref|YP_001113006.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052210|gb|ABO50181.1| NADH dehydrogenase subunit E [Desulfotomaculum reducens MI-1]
          Length = 158

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   ++ + ++Y  +   + +I ++   QE +G++ +  +   A  L +    V  +ATF
Sbjct: 10  NQSKLDALFAQYKGN--PNGLIVVMAAIQESQGYLPKDLLVRTAEELGVPLSDVYGVATF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F L P G R  V +C  T C ++G  ++  +   ++  K  +   D   S + V C 
Sbjct: 68  YAAFSLRPRG-RHSVNLCLGTACYVKGAPEVQSMLEKEMGIKAGNTTEDRRFSLDLVRCL 126

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP++ +  + Y  +T E++ E++  +
Sbjct: 127 GACGIAPVLTVNGEVYPRMTAEKVTEVLSKY 157


>gi|319760613|ref|YP_004124551.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039327|gb|ADV33877.1| NADH-quinone oxidoreductase subunit E [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 155

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              ++E    + E  + Y  +R  +A I  L   Q+  GWVS  AI ++A IL ++   V
Sbjct: 1   MQLTKEELSIIREECNCYESTR--AASIEALKIVQKNYGWVSDDAIVLIAQILHISVSDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY Q    PVG    ++ C +  C + GC  + +     ++ K  +   D   + 
Sbjct: 59  EGVATFYNQIFRQPVGQ-NIIRYCDSIVCYVTGCNAIKKTLECILNIKIGNTTKDNKFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               C G C  +P++MI +D Y  +   ++ +I++ + 
Sbjct: 118 LPTCCLGMCDKSPVIMINEDVYSHIVLSKINKILNLYR 155


>gi|303242579|ref|ZP_07329056.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302589883|gb|EFL59654.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 161

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   +++++S++     ++ +I +L   QE+  ++ +     ++  L+++  R+  +ATF
Sbjct: 6   NFKMIDDILSKH--GLSETYIIAILQSIQEKYRYIPKEVFPYLSKKLNVSEARIFSVATF 63

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVEC 140
           Y  F L P G +  +++C  T C +R    ++E  R ++          D   + E V C
Sbjct: 64  YENFSLEPKG-KYVIKICDGTACHVRKSIPILERLRKELKLSDKKITTDDLMFTVETVSC 122

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
            GAC  AP++ +    +  +TP++  E++     G  D
Sbjct: 123 LGACGLAPVITVNDKVHPAMTPDKASELLKELREGNAD 160


>gi|302342959|ref|YP_003807488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301639572|gb|ADK84894.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 168

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + E    ++++ + Y       A+IP+L   Q   G++  A  + +A+ L MA   V  +
Sbjct: 17  TPEMLTKIDQICADY--RGKPGALIPVLQACQGVVGYLPEAVQQRIADGLGMAGHEVFGV 74

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY+ F + P G R  V+VC  T C +RG ++ ++     +         D   + E V
Sbjct: 75  ATFYSFFTMKPRG-RNVVRVCLGTACYVRGGKETMDRLTQHLTLNADGTTEDRRFTVEGV 133

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C GAC  AP+V+I +DT+  +  + +  +++ + 
Sbjct: 134 RCLGACGVAPVVVINEDTHRKIMADSVINLVERYQ 168


>gi|57234507|ref|YP_181466.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224955|gb|AAW40012.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 159

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V  ++ +Y  ++ +  ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  
Sbjct: 12  KVKNILDKY--AKDKGMLVAILQDIQTEFNYLPRPALETVSEGLGVPMSQVYSVATFFKA 69

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G +  + VC  T C +RG  K+++    K+        +D   S + V C GAC
Sbjct: 70  FSLKPKG-KHSIHVCMGTACHVRGANKILDKLVEKLGCCAGENTADMKFSLDAVNCVGAC 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              P+V++      ++T E+++ +I+   
Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQ 157


>gi|291546306|emb|CBL19414.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Ruminococcus sp.
           SR1/5]
          Length = 159

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           +E+I  Y   R  +++IP++   Q +  ++    +  VA  + +   +   +ATFY  F 
Sbjct: 11  DEIIEHY--GRKAASLIPIMQDIQAEYRYLPGELLTYVAEQIGVKEAKAYSVATFYENFS 68

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACV 145
             P G +  ++VC  T C +R    + E    ++      H   D   + E V C GAC 
Sbjct: 69  FEPKG-KYIIKVCDGTACHVRKSMPVKEAMLKELGLSHKKHTTDDMMFTVETVSCLGACG 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            AP + +  + +  +TPE+  E+++   
Sbjct: 128 LAPTLTVNDEVHPKMTPEKAVELLNELR 155


>gi|124266600|ref|YP_001020604.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Methylibium petroleiphilum PM1]
 gi|124259375|gb|ABM94369.1| putative NADH dehydrogenase I (chain E) oxidoreductase protein
           [Methylibium petroleiphilum PM1]
          Length = 162

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + SE +    +  +++YP  + QSAV+  L   Q+++G VS  A   +A  L M  I V
Sbjct: 1   MTLSEATKARFDREVAKYPAEQRQSAVMACLAIVQQEQGHVSADAERAIAAHLGMPPIAV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ TFY  +   PVG R  + VC   PC LR  E  ++    K+  +P    +DG  + 
Sbjct: 61  HEVTTFYNMYNQQPVG-RFKLNVCTNLPCQLRDGETALQHVCKKLGVEPYGSTADGVFTV 119

Query: 136 EEVECQGACVNAPMVMIGKD-TYEDLTPERLEE 167
           +  EC GAC +AP++++        +T +RL+E
Sbjct: 120 QPSECLGACADAPVMLLNDRQMLSFMTEQRLDE 152


>gi|322419372|ref|YP_004198595.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320125759|gb|ADW13319.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 173

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 3/161 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           PS     E     +   I   P    +  ++  L +AQ   G++     + VA+++  + 
Sbjct: 16  PSPTRLPEALTRELESFIDSLPT--KEGHLVTALHKAQSLYGYLPMEVQQQVASLMGTSL 73

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  + +FYT F + P G +  + VC  T C +RG EK+I+  + ++  +      DG 
Sbjct: 74  SQVYGVVSFYTYFTMVPKG-KYPISVCNGTACFVRGSEKVIDAFKKQLCIEVGEVTRDGL 132

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S + + C GAC  AP+VM+G+ T+  +TP+++++II  F 
Sbjct: 133 FSIDVLRCVGACALAPVVMVGEKTFGGVTPDQVKDIIAEFK 173


>gi|73540323|ref|YP_294843.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
 gi|72117736|gb|AAZ59999.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Ralstonia eutropha
           JMP134]
          Length = 179

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
             A++P+L   Q+  G++   A+ V+A  L+++   V  + TFY  F+  P G R  VQV
Sbjct: 31  PGALLPILHEIQDTHGYIPDTAVPVIAKALNLSRAEVHGVITFYHHFRQQPAG-RHVVQV 89

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G E L E  +  +        +DG ++ E V C G C   P VM+G+  + 
Sbjct: 90  CRAEACQSVGAEALAEHAKRALGCDFHETTADGAVTLEPVYCLGQCACGPAVMMGEQLHG 149

Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            +  +R + ++      Q    +P  Q
Sbjct: 150 YVDAKRFDVLVRKLRADQT-AHQPANQ 175


>gi|125972949|ref|YP_001036859.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005705|ref|ZP_05430661.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281417160|ref|ZP_06248180.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum JW20]
 gi|125713174|gb|ABN51666.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990336|gb|EEU00462.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 2360]
 gi|281408562|gb|EFB38820.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum JW20]
 gi|316940815|gb|ADU74849.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           thermocellum DSM 1313]
          Length = 165

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++S +  S  ++A+I +L   QE+  ++ +     ++  L ++  R+  +ATFY  F
Sbjct: 14  IDNILSEHGTS--ETAIIAILQSIQEEYHYIPKEVFPYLSKKLKVSEARIFSVATFYENF 71

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGAC 144
            L P G +  ++VC  T C +R    +IE  R ++          D   + E V C GAC
Sbjct: 72  SLEPKG-KYIIKVCDGTACHVRKSIPIIERLRKELGLSGTKPTTDDLMFTVETVSCLGAC 130

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
             AP++ +    Y ++TP++  E+I     G  D 
Sbjct: 131 GLAPVITVNDKVYAEMTPDKASELIKQLREGDADA 165


>gi|326201301|ref|ZP_08191173.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988869|gb|EGD49693.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 157

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           VN +++++     +S +I +L   Q +  ++    +  VA  L++   ++  +ATFY  F
Sbjct: 9   VNGILNKH--DNNKSHLIAVLQEIQNEYKYLPEDVLNYVAEKLEINLSKIFSVATFYENF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
            L P G +  ++VC  T C +R    ++   R ++   +  H   D   + E V C GAC
Sbjct: 67  SLVPKG-KYIIKVCDGTACHVRKSIPILNAMRKELGLSESKHTTDDKLFTVETVSCLGAC 125

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             AP++ I    Y  +TP+   EII    +
Sbjct: 126 GLAPVITINDKVYAKMTPDSTIEIIKTLRS 155


>gi|226953549|ref|ZP_03824013.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
 gi|262373372|ref|ZP_06066651.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
 gi|294649463|ref|ZP_06726887.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835727|gb|EEH68110.1| NADH dehydrogenase subunit E [Acinetobacter sp. ATCC 27244]
 gi|262313397|gb|EEY94482.1| NADH dehydrogenase subunit I E [Acinetobacter junii SH205]
 gi|292824633|gb|EFF83412.1| NADH-quinone oxidoreductase subunit E [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 169

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    +   I  YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  
Sbjct: 17  LTADEIHEIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +     +DG  +   
Sbjct: 75  VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVDVSSVKQLLEKY 168


>gi|225175971|ref|ZP_03729963.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168559|gb|EEG77361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 155

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+  +   E+ S+Y   R +  +IP+L   Q   G++   A+  +A  + +   +V  +A
Sbjct: 2   EKEDMKFQEIFSQYNGEREE--LIPILQDTQAIYGYLPEQAMRAIARFMRIPQSQVYGVA 59

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TF+ QF  S  G +  ++VC  T C ++G  +L+E    ++         D + S E V 
Sbjct: 60  TFFGQFYFSRRG-KHAIKVCLGTACHVKGAGRLMEAFEREMGIGCGCITDDYSFSLERVN 118

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C GAC  AP+VM+G+D Y  +  +R++E++D ++ 
Sbjct: 119 CVGACAIAPVVMVGEDVYGHVESKRVKEVLDIYAK 153


>gi|254469432|ref|ZP_05082837.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
           JE062]
 gi|211961267|gb|EEA96462.1| formate dehydrogenase, gamma subunit protein [Pseudovibrio sp.
           JE062]
          Length = 158

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S++       +I  +     +  ++P+L   Q + G+V   A+  +A+ L+++   V   
Sbjct: 7   SQDIEKDTAAIIDVH--EHQEGPLLPILHDVQAKFGYVPEDALLQIADRLNLSRAEVHGT 64

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+  P G R  ++VC    C   G EKL E  +  +  K      DG ++ E V
Sbjct: 65  MSFYHDFRTEPAG-RHVLKVCRAEACQSLGGEKLAEDIQRDLGIKWHETTPDGKVTLEPV 123

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C G C  AP  M+  + +  L    + ++++   
Sbjct: 124 YCLGLCSCAPAAMMDGNLHGRLDEAAVLKLVEEVK 158


>gi|322420256|ref|YP_004199479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320126643|gb|ADW14203.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 180

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 20  EESAIWVNEVISRYPP----SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            E    +   I  +PP     + +  +I  L +AQ+  G++       VAN   +    V
Sbjct: 15  PEKTSELAAYIDSFPPVTEWRKKRGDLIASLHKAQQLFGYLPEEVQLFVANKFRLQLSDV 74

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY+ F + P G R  V VC  T C ++G ++++    +++         D   S 
Sbjct: 75  AGVVTFYSFFVVRPPG-RYTVNVCTGTACFVKGADRVLREFEHELGIASGETRGDLEFSL 133

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
             + C GAC  AP+VM+    Y ++TP+ ++ I+      +  + 
Sbjct: 134 GGLRCVGACSLAPVVMVNDRVYGNVTPDMVKAIVKECQALKEGSH 178


>gi|148653493|ref|YP_001280586.1| NADH dehydrogenase subunit E [Psychrobacter sp. PRwf-1]
 gi|148572577|gb|ABQ94636.1| NADH-quinone oxidoreductase, E subunit [Psychrobacter sp. PRwf-1]
          Length = 170

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++E I  YP +R  +A +  L   Q++ GWV+ A +  +AN+LD+    +  
Sbjct: 18  LTAQEIEGIHEYIHHYPHAR--AASLDALKLVQKRNGWVNDAQVNAIANLLDVPVTDIEG 75

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +   SPVG R  + VC +  C L G E+L    +  +  +     +DG  +   
Sbjct: 76  VATFFNRIYRSPVG-RHVILVCDSIACYLTGYEELAAELKTTLGIEFGQTTADGRFTLLP 134

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P V+I +DT+  ++P  + E+++ +
Sbjct: 135 ICCLGNCDKGPSVLIDEDTFGPVSPSEVAELLEYY 169


>gi|297587237|ref|ZP_06945882.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
 gi|297575218|gb|EFH93937.1| NADH-quinone oxidoreductase subunit E [Finegoldia magna ATCC 53516]
          Length = 161

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 15  SFSFS-EESAIWVNEVISRYPPSRC-QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           SF+F  +E A  V E        +  +  ++P+L RAQ++ G++ +  I +++ ILD+  
Sbjct: 2   SFTFDLKEHASQVEEFREFVRSKKDIKGPLMPVLQRAQDEFGYLPKEIITMISKILDIPL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  + TFY QF L P G +  +QVC  T C ++G +++ E  +  +         D  
Sbjct: 62  SEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S     C G C  AP+++I  D Y  +    LE II  ++
Sbjct: 121 FSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIISKYN 161


>gi|77919201|ref|YP_357016.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545284|gb|ABA88846.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 173

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P   +        + + ++  P    +  ++ +L +AQ   G++ +   E VA+ ++++ 
Sbjct: 16  PDRATLPATLYRQLADFVATLPT--KEGHLVTVLHKAQSLFGYLPKEVQEFVADHMEVSL 73

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  + +FYT F + P G +  + VC  T C ++G +K+++  +N++         DG 
Sbjct: 74  AQVYGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDAFKNQLGVTVSEVTRDGK 132

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S + + C GAC  AP+V++G+  Y ++TP+++++II  F
Sbjct: 133 FSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDIIADF 172


>gi|303246232|ref|ZP_07332512.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302492295|gb|EFL52167.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 168

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++  Y   R  + ++P+L   QE+  ++    +  VA  L +    V  +ATFY  F L+
Sbjct: 21  ILDHY--GRHPARLVPILQALQEEYRYLPEEVLSYVATSLRIPEANVFGVATFYAHFALT 78

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147
           P G +  V++C  T C ++    ++E  R ++   +      D   + E V C GAC  A
Sbjct: 79  PKG-KYIVRLCDGTACHVKHSIPILEALRGRLSLSEEKTTTPDMLFTVETVACLGACGLA 137

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+++I +D Y  +TP+R   +ID+    +
Sbjct: 138 PVMVINEDVYGQMTPQRAVSLIDSIRAKE 166


>gi|317052149|ref|YP_004113265.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
           indicum S5]
 gi|316947233|gb|ADU66709.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurispirillum
           indicum S5]
          Length = 173

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P S +  +     V   + RY  +R   A+I +L  AQE  G++    +  VA  LD+ 
Sbjct: 7   SPGSATTDDPRIRLVERTLKRY--ARQPDALIEVLHTAQEAYGYLPEGILTHVARELDLP 64

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             +V+ +ATFY  F L P G  + + VC  T C ++G  +++     +          DG
Sbjct: 65  ESQVMGVATFYHFFSLRPRGEHSCI-VCTGTACYVKGAGEIVSAVEKEYGITAGQTTPDG 123

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPE-RLEEIIDAFSTGQGDT 179
            LS     C G C  APM+ +  +     TPE  LE++    + G+G+ 
Sbjct: 124 KLSLGAARCLGNCSLAPMLTLDDEVLGRETPEGTLEKLRQHIAAGRGEP 172


>gi|239905423|ref|YP_002952162.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795287|dbj|BAH74276.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 168

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ RY   R  + ++P+L   QE+  ++ +  +  VA  L +    V  +ATFY  F L 
Sbjct: 21  ILDRY--DRHPARLVPILQALQEEYRYLPQEVLSYVATSLRIPEANVFGVATFYAHFALE 78

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147
           P G +  V++C  T C ++    ++E  R ++   +      D   + E V C GAC  A
Sbjct: 79  PKG-KYVVRLCDGTACHVKQSIPILEALRARLDLTEAKATTPDMLFTVETVACLGACGLA 137

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+++I +D Y  +TPER  ++IDA    +
Sbjct: 138 PVLVINEDVYGQMTPERAVDLIDAIRAKE 166


>gi|73748524|ref|YP_307763.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147669305|ref|YP_001214123.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|289432571|ref|YP_003462444.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73660240|emb|CAI82847.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146270253|gb|ABQ17245.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|288946291|gb|ADC73988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 157

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V +++++Y  ++ +  ++ +L   Q +  ++ R A+E V+  L +   +V  +ATF+  
Sbjct: 12  KVKDILNKY--AKDKGMLVAILQDIQTEFNYLPRPALEAVSQGLGVPMSQVYSVATFFKA 69

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G +  V VC  T C +RG  K+++    K+         D   S + V C GAC
Sbjct: 70  FSLKPKG-KHSVHVCMGTACHVRGASKILDKLVEKLGCCAGENTEDMKFSLDAVNCVGAC 128

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              P+V++      ++T E+++ +I+   
Sbjct: 129 ALGPVVVVDGQYVGNMTTEKVKPLIEGCQ 157


>gi|118594390|ref|ZP_01551737.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
 gi|118440168|gb|EAV46795.1| ATP synthase subunit E [Methylophilales bacterium HTCC2181]
          Length = 157

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + SE   I + + +  +       A++PL+   Q+  G++   +  ++++  +++   +
Sbjct: 1   MNLSETQRITIEKHVETFLT--KPGALLPLMHAIQDSLGYIPEDSYPIISSAYNLSIAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
               TFY  F+ SP G +  +QVC    C   G E +   C+  +       + DG ++ 
Sbjct: 59  HGFVTFYHHFRTSPSG-KNILQVCRAESCQSMGSESIENYCKKVLGVDYHETSKDGVITL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C G C  +P VM+       +TPE+++ II A  
Sbjct: 118 EPVYCLGNCACSPSVMMNDKVIGRVTPEKIDNIIKAVK 155


>gi|150398097|ref|YP_001328564.1| formate dehydrogenase subunit gamma [Sinorhizobium medicae WSM419]
 gi|150029612|gb|ABR61729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           medicae WSM419]
          Length = 159

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +E +   V E+       R +  +IP+L   Q++ G+V   ++ V+A  L+++   V  +
Sbjct: 11  TERTLAIVGEL------KRLEGPLIPILHEIQDEFGYVPEESLPVIAQELNLSRAEVYGV 64

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  F+  P G R  +++C    C   G ++L E  +  +         DG ++ E V
Sbjct: 65  VTFYHDFREHPAG-RHVLKLCRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPV 123

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C G C  +P  M+  + +  L    L+ ++    
Sbjct: 124 YCLGLCSCSPSAMLDGELHARLDEAVLDALVAEAR 158


>gi|160893747|ref|ZP_02074531.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
 gi|156864732|gb|EDO58163.1| hypothetical protein CLOL250_01301 [Clostridium sp. L2-50]
          Length = 160

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +++I+ Y        +IP++   Q +  ++    +  VA+ L++   +   +ATFY
Sbjct: 7   YDEADKIIAAYGTE--PRFLIPIIQDIQSEYKYLPPELLRYVADKLNITEAKAYSVATFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
             F     G +  ++VC  T C +R    ++     ++   K  H   D   + E V C 
Sbjct: 65  ENFSFDAKG-KFILKVCDGTACHVRKSMDILNQLYKELGLSKEKHTTDDMMFTLETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           GAC  AP++ +    +  +TPE++  +I     G  +
Sbjct: 124 GACGLAPVMTVNDVVHPAMTPEKVTALIAELKEGADE 160


>gi|261416515|ref|YP_003250198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372971|gb|ACX75716.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327348|gb|ADL26549.1| NADH-quinone oxidoreductase, E subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 353

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + E      +++SRYP    Q+A++ +L   Q   GWV R  I   AN+   A    L +
Sbjct: 57  TPEIKERCADLLSRYPVG--QAALLEVLWLVQGVFGWVPREGIRWAANVCGCAPAHALGV 114

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFYT +  +P G +  +Q C    C ++G   LI    + ++ K      DG  +  +V
Sbjct: 115 ATFYTMYNHAPKG-KFLLQFCRNISCTIKGAPSLIAYVEHALNIKTGETTPDGLFTILQV 173

Query: 139 ECQGACVNAPMVMIGKDTYED-------------LTPERLEEIIDAFSTGQGDTIRP 182
           EC G+C N PM+++  D   D             LT + ++ I+      + +  + 
Sbjct: 174 ECLGSCGNGPMMLVNDDFATDADGDVLTMKPGTKLTTDSIDRILKWCYAHEDNIPKH 230


>gi|116254126|ref|YP_769964.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258774|emb|CAK09880.1| putative NAD-dependent formate dehydrogenase gamma subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 159

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHLLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG ++ E V C G C  AP  M+  + + 
Sbjct: 84  CRAEACQSMGGDALAERVKALLGIDFHQTTPDGGVTLEPVYCLGLCACAPAAMLDGEVHG 143

Query: 159 DLTPERLEEIIDAFST 174
            +  +R  E++     
Sbjct: 144 RVDEQRAAELVAEARR 159


>gi|320161179|ref|YP_004174403.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995032|dbj|BAJ63803.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 205

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + ++ +   E  P +    EE    +++++ +         ++ +L   Q Q G++S   
Sbjct: 33  LMLKSITVPENDPIAI---EEKRAIIDQILEQ--NKHLPGGLMVILNEVQSQIGFISEPM 87

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            + +AN L +    V  + +FY+ F  +P G +  ++ C  T C + G  +LIE  +  +
Sbjct: 88  QQYIANKLHVPVSTVHGVVSFYSFFTTTPRG-KHTIKFCMGTACYVGGTPQLIEKAKQVL 146

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
              P     DG ++ E   C GAC  AP++++ ++    + P +  +++
Sbjct: 147 GIDPGETTPDGQITLELCRCVGACSQAPVIVVDEEIQGRVRPNKFPQLL 195


>gi|299771416|ref|YP_003733442.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
 gi|298701504|gb|ADI92069.1| NADH dehydrogenase subunit E [Acinetobacter sp. DR1]
          Length = 169

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    +   I  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  
Sbjct: 17  LTAEEIHDIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +      DG  +   
Sbjct: 75  VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168


>gi|262195155|ref|YP_003266364.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
           14365]
 gi|262078502|gb|ACY14471.1| NADH-quinone oxidoreductase, E subunit [Haliangium ochraceum DSM
           14365]
          Length = 172

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           S   FS E+   ++ +  RYP    Q  V+  L  AQ++ G +S  A+ VVA  L++ Y 
Sbjct: 8   SPLEFSAEARQKIDALSQRYPT--KQPVVLAALHLAQKEFGHLSDDALRVVAKTLELPYP 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFYT F+  P G +  ++VC    CMLRG   ++E    ++  K    + D   
Sbjct: 66  HVYGVATFYTMFRRQPAG-KNVLRVCTNISCMLRGAYDVLEAFEKRLGIKVGDSSGD--F 122

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              E EC  AC NAP V+ G   + D+ P +++EIID        T  P  +
Sbjct: 123 HLVEEECIAACANAPAVICGTKYFLDVEPSQVDEIIDFLE----KTPHPESE 170


>gi|255318319|ref|ZP_05359554.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
           radioresistens SK82]
 gi|262379063|ref|ZP_06072219.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           radioresistens SH164]
 gi|255304631|gb|EET83813.1| NADH-quinone oxidoreductase, E subunit [Acinetobacter
           radioresistens SK82]
 gi|262298520|gb|EEY86433.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           radioresistens SH164]
          Length = 169

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    +   I  YP +R  +A +  L   Q + GWV  A +  +A +L ++   +  
Sbjct: 17  LTSEEIHEIQHHIGHYPYAR--AASLDALKCVQRRNGWVDDAQLNAIAQLLSISTADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +     +DG  +   
Sbjct: 75  VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +MI  DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDGDTHGLVEVTSIQQLLEKY 168


>gi|262280143|ref|ZP_06057928.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260494|gb|EEY79227.1| NADH dehydrogenase subunit I E [Acinetobacter calcoaceticus
           RUH2202]
          Length = 169

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    +   I  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  
Sbjct: 17  LTAEEIHDIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +      DG  +   
Sbjct: 75  VATFYNRIYRHPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 168


>gi|241206611|ref|YP_002977707.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860501|gb|ACS58168.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 159

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHEVQQEFGYVPQEAMPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG ++ E V C G C  AP VM+  + Y 
Sbjct: 84  CRAEACQSMGGDALAERVKALLGIDFHQTTLDGGVTLEPVYCLGLCACAPAVMLDGEVYG 143

Query: 159 DLTPERLEEIIDAFST 174
            +  +   E++     
Sbjct: 144 RVDDQTAAELVAEARR 159


>gi|239904884|ref|YP_002951622.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
           [Desulfovibrio magneticus RS-1]
 gi|239794747|dbj|BAH73736.1| respiratory-chain NADH dehydrogenase 24 kDa subunit family protein
           [Desulfovibrio magneticus RS-1]
          Length = 171

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           + +  ++ +L +AQ   G++     + VA+ +++   +V  + +FYT F + P G +  +
Sbjct: 37  QKEGHLVTVLHKAQSVFGYLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKG-KHPI 95

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
            +C  T C ++G +K++   + ++         DG  S + + C G C  AP+VM+G+  
Sbjct: 96  SICMGTACFVKGADKVVNAFKEQLKIDIGDVTPDGKFSIDTLRCVGGCALAPIVMVGEKV 155

Query: 157 YEDLTPERLEEIIDAF 172
           Y ++TP ++++I+  F
Sbjct: 156 YGNVTPGQVKKILADF 171


>gi|77919235|ref|YP_357050.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545318|gb|ABA88880.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 172

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P   +        + + ++  P    +  ++ +L +AQ   G++ +   E VA+ +D + 
Sbjct: 15  PDRATLPATLYQQLADFVATLPT--KEGHLVTVLHKAQSLFGYLPKEVQEFVADQMDESL 72

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  + +FYT F + P G +  + VC  T C ++G +K+++  + ++         DG 
Sbjct: 73  AKVYGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDALKQQLGVTVSEVTKDGK 131

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S + + C GAC  AP+V++G+  Y ++TP+++++I+  F+
Sbjct: 132 FSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDILADFA 172


>gi|77164633|ref|YP_343158.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254433276|ref|ZP_05046784.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
 gi|76882947|gb|ABA57628.1| NADH dehydrogenase subunit E [Nitrosococcus oceani ATCC 19707]
 gi|207089609|gb|EDZ66880.1| NADH-quinone oxidoreductase, E subunit subfamily [Nitrosococcus
           oceani AFC27]
          Length = 154

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    ++   + YP ++     I  +   Q   GWVS  ++  +A  L ++   +  
Sbjct: 2   LSTEEIKAIDAERAHYPTAQAVG--IEAMKIVQHHRGWVSDESLREIAEYLGLSVESLDG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            ATFY      PVG +  + +C +  C + G E+L E  + ++         DG  +   
Sbjct: 60  AATFYNLIFRRPVG-KHVILICDSVSCWIMGYEQLREQLQTELKIGLGETTQDGRFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             C GAC  AP++++ +D + DL  E++ EI+  +
Sbjct: 119 SCCLGACERAPVMVVDQDLHGDLDSEKIGEILAGY 153


>gi|320353703|ref|YP_004195042.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320122205|gb|ADW17751.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 171

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           ++ ++     +  +IP+L   QE+  ++    +  VA  LD+   RV  +ATFY+ F L 
Sbjct: 23  ILEQHDNQPQR--LIPILQAVQEEYRYLPEDVLTFVAAGLDVPPARVYGVATFYSHFALE 80

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNA 147
           P G +  +++C  T C ++    ++E    ++          D   + E V C GAC  A
Sbjct: 81  PKG-KYCIRLCDGTACHVKRSIPILEAIYKRLGLSSKRTTTEDMLFTVETVACLGACGLA 139

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           P+V+I ++ +  +TPE   ++I+     +
Sbjct: 140 PVVVINEEVHGQMTPEAAIQLINEIEERE 168


>gi|56387325|gb|AAV86074.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 158

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++++Y  +     +I +L   QE+  ++ + A   ++  L M+  ++  +ATFY  F
Sbjct: 10  LDIILTKY--NHDACNIIAILQDTQEKYRYLPKEAFVYLSEKLGMSRAKIYSVATFYENF 67

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144
            L P G +  +++C  T C +R    +++  R +++       +D    + E V C GAC
Sbjct: 68  SLEPKG-KFVIKICDGTACHVRKSIPILDKLRKELNLSEAKTTTDDLIFTLETVSCLGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             AP + +    Y  +TPE+  E+++ F   +
Sbjct: 127 GLAPAMTVNDKVYGSMTPEKAMELLNTFKEEK 158


>gi|21672440|ref|NP_660507.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008858|sp|Q8K9Y4|NUOE_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|21623052|gb|AAM67718.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 168

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           ++F+ +      + +    Y  SR  S  I  L   Q++ GWV   AI  +ANIL++   
Sbjct: 12  TTFTLTTFEINEIEKQKKYYENSRSVS--IEALKIVQKKRGWVCDQAIIEIANILNLNPS 69

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  +ATFY+Q    PVG R  ++ C +  C L G EK+ +   + +  K  +   DG  
Sbjct: 70  EVESVATFYSQIYRQPVG-RNVIRYCDSVVCYLTGYEKIKKFLEDYLFIKIGNTTVDGRF 128

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +   V C G C  AP +MI +D Y  L P+ +  +++ + 
Sbjct: 129 TLLPVCCLGNCDKAPTIMINEDLYSHLNPDLIPNLLELYK 168


>gi|328543745|ref|YP_004303854.1| ATP synthase subunit E [polymorphum gilvum SL003B-26A1]
 gi|326413489|gb|ADZ70552.1| ATP synthase subunit E [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 20  EESAIWVNE----VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           ++    + E    V+ R+  +  +  ++P+L   QE+ GW+  AA+  +A  L++    V
Sbjct: 2   QDQDARIAEQTRLVVERH--ATTEGPLLPILHEVQEEFGWLPPAALRTIAEGLNLGRAEV 59

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY  F+  P G R  +++C    C   G E++ E  R ++        +DG+++ 
Sbjct: 60  HGVATFYHDFRTEPAG-RHRLKICRAEACQAMGGERIAERARAELGLDWHETAADGSVTL 118

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           E V C G C  AP  M+       L  +R   I+    T
Sbjct: 119 EPVYCLGLCACAPAAMVDDRLEGRLDADRFARILAEVRT 157


>gi|209551212|ref|YP_002283129.1| formate dehydrogenase subunit gamma [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536968|gb|ACI56903.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 159

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + +++P+L   Q++ G++ + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGSLLPILHEVQDEFGYIPQEAVPVIAEELNLSRAEVHGVVTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG+++ E V C G C  AP  M+  + Y 
Sbjct: 84  CRAEACQSMGGDALAERVKTLLGIDFHQTTLDGSVTLEPVYCLGLCACAPSAMLDGEVYG 143

Query: 159 DLTPERLEEIIDAFST 174
            +  +   E++     
Sbjct: 144 RVDDQLAAELVAEARR 159


>gi|226939460|ref|YP_002794533.1| NADH dehydrogenase subunit E [Laribacter hongkongensis HLHK9]
 gi|226714386|gb|ACO73524.1| NuoE [Laribacter hongkongensis HLHK9]
          Length = 166

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRA------QE---QEGWVSRAAIEVVANIL 68
            S E+   ++  +++YP  + +SAV+  L  A      Q    +E  ++   +E VA+ L
Sbjct: 2   LSPEALQLIDREVAKYPADQARSAVMGALRIALTERREQGRTPEERCLTTELVEFVADYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +  +   E+ATFY  + + PVG +  + VC   PC LRG     +  + K+        
Sbjct: 62  GIPPVAAYEVATFYNMYDMKPVG-KYKLTVCTNLPCALRGGVDTADYLQKKLGIALGETT 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAF 172
           +DG  +  E EC GAC +AP++++        +TPE +++ +  F
Sbjct: 121 ADGKFTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDQKLAEF 165


>gi|169824853|ref|YP_001692464.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|302379620|ref|ZP_07268105.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|303234495|ref|ZP_07321132.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna BVS033A4]
 gi|167831658|dbj|BAG08574.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|302312527|gb|EFK94523.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302494329|gb|EFL54098.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Finegoldia
           magna BVS033A4]
          Length = 161

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           SF+F  +      E    +  S+   +  ++P+L  AQ++ G++ +  I  ++ ILD+  
Sbjct: 2   SFTFDLKEHAEQVEEFREFVRSKKDIKGPLMPVLQHAQDEFGYLPKEIITTISKILDIPL 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  + TFY QF L P G +  +QVC  T C ++G +++ E  +  +         D  
Sbjct: 62  SEIYGVITFYAQFSLIPKG-KYDIQVCEGTACYVKGAQRVSEKLQEILKIPAGSTTEDQK 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            S     C G C  AP+++I  D Y  +    LE I+  ++
Sbjct: 121 FSITPCRCVGLCALAPVIVINGDVYGKVAVNELESIVSKYN 161


>gi|218441076|ref|YP_002379405.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp. PCC
           7424]
 gi|218173804|gb|ACK72537.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7424]
          Length = 166

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  +A  L +   RV  +ATFY  F L P G   
Sbjct: 30  NQYRQDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSRVYGVATFYHLFSLKPSGEHT 89

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G +K++     ++  K    + DG +S     C GAC  AP V+   
Sbjct: 90  CV-VCLGTACYVKGGDKILSDLEKQLGIKVGETSPDGKVSLVSARCIGACGIAPAVVFDG 148

Query: 155 DTYEDLTPERLEEIID 170
                   + + E I+
Sbjct: 149 AVAGKQDSQSVIEKIE 164


>gi|325960238|ref|YP_004291704.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
           sp. AL-21]
 gi|325331670|gb|ADZ10732.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanobacterium
           sp. AL-21]
          Length = 158

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +NE++S Y  ++  S +IPLL   Q   G++S  +I+ V+    ++   +  +ATFYTQF
Sbjct: 5   LNEILSTYEGTK--SELIPLLQDVQANLGYLSEESIKDVSKFTGVSESEIYGVATFYTQF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +PVG +  + VC  T C ++G  ++IE     +  K      D   S E V C G C 
Sbjct: 63  RFTPVGKKH-IMVCKGTACHVKGAPQIIEGIERHLGIKEGEVTFDMEYSLESVGCLGCCA 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEI 168
            AP  MI  D   ++T + +++I
Sbjct: 122 LAPCAMINDDVESNMTLKDVKKI 144


>gi|118581918|ref|YP_903168.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118504628|gb|ABL01111.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
          Length = 172

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 85/160 (53%), Gaps = 3/160 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P   +        +++ ++  P    +  ++ +L +AQ+  G++ R   + VA+++ ++ 
Sbjct: 16  PGRSTLPATLCQELDDFVADLPT--REGHLVTVLHKAQQLFGYLPREVQQYVADLMGVSL 73

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +A+FYT F + P G +  + +C  T C ++   K+++  ++ +  +      DG 
Sbjct: 74  AKVYGVASFYTFFSMVPKG-KYPISICMGTACYVKQAHKIVDAFKDILGVEIGEVTGDGK 132

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            S + + C GAC  AP++ +G+  Y  +TP++++EII  +
Sbjct: 133 FSIDVLRCVGACALAPILTVGEKVYAHVTPDQVKEIIAEY 172


>gi|126463499|ref|YP_001044613.1| formate dehydrogenase subunit gamma [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105163|gb|ABN77841.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 157

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    V++++  +     +  ++P+L   QE  G V   ++  +A  L+++   V  + 
Sbjct: 6   AEVHARVDDILDAHEG--LEGPLLPILNAVQEAFGHVPLDSLPRIAERLNLSRAEVHGVM 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G ++L E  + ++        +DG ++ E V 
Sbjct: 64  SFYHDFRTRPHG-RHVLKLCRAEACQAMGGDRLAEATQARLGIGWHQTTADGGVTLEPVF 122

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C   P  ++       +   RLE I++    
Sbjct: 123 CLGLCACGPAALVDGRVVGRVDEARLERILEEVRA 157


>gi|118579071|ref|YP_900321.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118580050|ref|YP_901300.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118581590|ref|YP_902840.1| NADH-quinone oxidoreductase subunit E [Pelobacter propionicus DSM
           2379]
 gi|118501781|gb|ABK98263.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
           2379]
 gi|118502760|gb|ABK99242.1| NADH-quinone oxidoreductase, E subunit [Pelobacter propionicus DSM
           2379]
 gi|118504300|gb|ABL00783.1| NADH dehydrogenase subunit E [Pelobacter propionicus DSM 2379]
          Length = 154

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
                ++ + YP     S V+P L    +++  +  +    +AN L +  ++V E  T+Y
Sbjct: 5   EEKFAQLRATYPKELNSSLVMPFLRIMLDEKKSLGESDAVFIANYLGLPAMQVKEALTWY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           T F   PVGT   ++VC    C L G E++I+    K+  KP    +DG  +   VEC  
Sbjct: 65  TMFYRHPVGT-HVIKVCRNIACSLMGAERIIDHLSQKLGIKPGETTADGRFTLLLVECLA 123

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +C  AP++ I    +E LT  ++++I+   S
Sbjct: 124 SCGTAPVMQIDDTYHEQLTEAKIDQILKGLS 154


>gi|257065151|ref|YP_003144823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792804|gb|ACV23474.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 162

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 3/157 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    V E+I  YP  +  +  +  +   Q    ++    +  +A  L     ++  +A
Sbjct: 4   KDQTSKVKEIIEAYPADQRFA--LAAMQDMQHAFNYIPEEGLAALAEYLGCPQAQLYSMA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY    L+P G    V++C  T C LRG   L    +  +  +P     DG  S E V 
Sbjct: 62  TFYKALSLTPKGD-HIVKICNGTACHLRGSMNLATELKRDLGVEPGETTEDGKFSVELVN 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C G+C  AP++++    +  L  E++  II+ ++  +
Sbjct: 121 CLGSCALAPVMVVDGTYHNKLRVEQIPGIIERYAAEE 157


>gi|33595782|ref|NP_883425.1| formate dehydrogenase subunit gamma [Bordetella parapertussis
           12822]
 gi|33565861|emb|CAE36408.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           parapertussis]
          Length = 163

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A++P+L   Q++ G++   A++ +A  L ++   V  + TFY  F+  P G R  ++
Sbjct: 25  QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLE 83

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   G + L    R ++  +     +DG+ + E V C G C  +P VMI    +
Sbjct: 84  ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 143

Query: 158 EDLTPERLEEIIDA 171
             +TP +L+ ++  
Sbjct: 144 ARVTPAKLDRLLAR 157


>gi|114567344|ref|YP_754498.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338279|gb|ABI69127.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+IS Y        +I      Q++  ++   A+   A + D+   +   +ATFY+  +
Sbjct: 5   REIISAYKE--VPGGIIEAYHAVQKEYSYIPEDAVVYAAQVFDIPEAKAYGVATFYSYLK 62

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + P G +  +++C + PC + G +K++     ++  K      DG  + E  EC G C  
Sbjct: 63  VGPRG-KNVIRICESAPCHIAGADKVVAALEKELGIKMGETTPDGKFTLEFAECVGQCQA 121

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
            P++ I    Y D+T +++  I+  + 
Sbjct: 122 TPVITINSQPYGDVTADKIAAILTEYK 148


>gi|308271654|emb|CBX28262.1| hypothetical protein N47_G35860 [uncultured Desulfobacterium sp.]
          Length = 162

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 26  VNEVISR-YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           ++ +I   Y   +    +I +L   Q+   ++  AAI  +A  + +    +  +ATFY+ 
Sbjct: 17  LDRIIEEDYNNDKE--NLIMILQGIQKVYNYLPGAAISYLAVKIGIPLSHIYGVATFYST 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G R  + +C  T C +RG E++ E   N ++        D   + E V C G C
Sbjct: 75  FSLKPRG-RNIISICLGTACHVRGGERIRESLTNTLNITDGQTTEDKRFTLESVRCIGCC 133

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              P++ I +D +  +TP+++  I+  +
Sbjct: 134 SLGPVIKINEDMHGRITPDKVNPILSHY 161


>gi|33600309|ref|NP_887869.1| formate dehydrogenase subunit gamma [Bordetella bronchiseptica
           RB50]
 gi|33567908|emb|CAE31821.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella
           bronchiseptica RB50]
          Length = 185

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A++P+L   Q++ G++   A++ +A  L ++   V  + TFY  F+  P G R  ++
Sbjct: 47  QPGALLPVLHAVQDELGFIPPEAVQTIAETLSLSRAEVHGVITFYPHFRSEPAG-RHVLE 105

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   G + L    R ++  +     +DG+ + E V C G C  +P VMI    +
Sbjct: 106 ICRAESCQAMGGDALAAHARQRLGCEFHATAADGSCTLEPVYCLGLCAQSPAVMIDGQPH 165

Query: 158 EDLTPERLEEIIDA 171
             +TP +L+ ++  
Sbjct: 166 ARVTPAKLDRLLAR 179


>gi|260892246|ref|YP_003238343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
 gi|260864387|gb|ACX51493.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ammonifex degensii
           KC4]
          Length = 158

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           E+     E++++Y     +  +  +L   Q + G++   A+EVVA  + ++   +  +A+
Sbjct: 3   EAVTVTREIVAKYKG--REGVLTHILQDIQGRFGYLPPEAMEVVAEEMGVSLAELYGMAS 60

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY +F  +P G +  ++VC  T C +RG E+++     ++  K    + D   + E V C
Sbjct: 61  FYARFYFTPRG-KTVIKVCRGTACHVRGSERVLAKFSEELGLKEGETSPDLKFTLEAVNC 119

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            G C  AP+VMI +  +    P +   ++     G+
Sbjct: 120 VGCCALAPVVMINEKVFTANDPGK---LLATLRQGE 152


>gi|206602056|gb|EDZ38538.1| Putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           sp. Group II '5-way CG']
          Length = 168

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   + E+   +  S  + AV+ +L + QE+ G+V   A+E V  IL++   ++  + 
Sbjct: 8   EVTYEDIEEICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF   P G +  ++VC  T C +RG   L++  + ++H +P     D   + E V 
Sbjct: 66  TFYSQFYQEPRG-KFVLKVCVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C G+C  APM M+    Y  L+ +++  +I  F         P
Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQFEEEAEKEEEP 167


>gi|325291005|ref|YP_004267186.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
 gi|324966406|gb|ADY57185.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
          Length = 154

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 5/152 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYT 83
           V  V+ ++   +    +I +++  Q+  G  ++ +  +E VA  L+M   +V  + TFY 
Sbjct: 4   VKGVLEKFGTGKE--NLIQIMLELQQLSGNNYLPQEWVEEVAKALEMPMSKVYGVMTFYA 61

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F     G +  ++VC + PC + G E ++E+    +  KP     DG  + E   C GA
Sbjct: 62  MFDTEKRG-KNLIEVCKSGPCHVAGAENVMELLEEALRIKPGETTDDGLFTLEYSACFGA 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C  AP + IG++ Y +LT  +L+EII+++  G
Sbjct: 121 CDIAPAIKIGENVYGNLTEAKLKEIINSYKEG 152


>gi|114566556|ref|YP_753710.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337491|gb|ABI68339.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            ++IS+Y        +I      Q +  ++   AI V A +  +   +   +ATFY+  +
Sbjct: 5   EDIISKYQD--LPGGIIEAYHALQREYSYIPEDAIRVAAEVFGIPTAKAWGVATFYSYLK 62

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           +   G +  +++C + PC + G  ++I     ++  K      DG  + E  EC G C  
Sbjct: 63  VGKRG-KNVIRICESAPCHVAGAAEVIAALEKELGIKMGETTPDGKFTLELCECVGQCQA 121

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
            P++ +    Y D+TPE++  ++  + 
Sbjct: 122 TPVITVNSKPYGDMTPEKVSGVLAEYR 148


>gi|154505521|ref|ZP_02042259.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
 gi|153794179|gb|EDN76599.1| hypothetical protein RUMGNA_03058 [Ruminococcus gnavus ATCC 29149]
          Length = 164

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           +Q   +   +      +E+++ +     Q ++IP++   Q +  ++    +  VA  + +
Sbjct: 2   YQKEGYMLDQSYYDKADEIVASHGA--YQESLIPIIQDIQSEYRYLPPELLSYVAEKIGI 59

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNS 129
           +  +   +ATFY  F   P G +  ++VC  T C +R    ++E   +++          
Sbjct: 60  SEAKAYSVATFYENFSFEPKG-KYVIKVCNGTACHVRKSIPILERLYSELGISGEKNTTD 118

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           D   + E V C GAC  AP++ +    Y  +TP+   E+I    
Sbjct: 119 DMLFTVETVSCLGACGLAPVLTVNDTVYPKMTPDAAAELIHELR 162


>gi|188585337|ref|YP_001916882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350024|gb|ACB84294.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 186

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E+I ++   +    +IPLL   QE+EG++SR  +E +A  ++++  +++ + +FY
Sbjct: 26  KEELRELIRKH--RKDSGGLIPLLQTVQEREGYLSRKRLESIAREMNLSLAKIMGVVSFY 83

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +QF + P G +  ++VC  T C ++G  +++E  + ++  +      D   S E V C G
Sbjct: 84  SQFHIQPKG-KNIIRVCMGTACHVKGAGQVMEKFQRELSIETGQTTEDREFSLEAVSCIG 142

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP++ I  +T+  +T   +  +I+ +
Sbjct: 143 ACGLAPVLTINHNTHGKVTTSDVNHLINRY 172


>gi|310778493|ref|YP_003966826.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747816|gb|ADO82478.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 159

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
               +I +L +AQ+  G++     E +   + +    +  + TFY+ F  +P G    + 
Sbjct: 25  KDGELISVLHKAQDMFGYLPVEVQEFIGEKMGIPISEIYGVITFYSFFTTTPKGE-HPIS 83

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C + G E ++     ++  K     +DG  S + + C GAC  AP++ IG  TY
Sbjct: 84  VCMGTACYVNGSETILNELTRELGVKVGETTNDGKFSIDVLRCIGACGMAPIIKIGNKTY 143

Query: 158 EDLTPERLEEIIDAF 172
             +  E+++ I+  +
Sbjct: 144 GRVEAEQVKHILKEY 158


>gi|254282424|ref|ZP_04957392.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
 gi|219678627|gb|EED34976.1| NADH dehydrogenase i chain e [gamma proteobacterium NOR51-B]
          Length = 167

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAV-IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           + S+     ++  I+  P    +SAV I  L   Q   GWVS  ++  +A  L+M+   +
Sbjct: 11  ALSDSEIAAIDAEIAHVPY---RSAVAIDALKIVQAHRGWVSDESLRAIARHLEMSAEEL 67

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY      PVG R  + +C +  C ++GC+K+       +        +D   + 
Sbjct: 68  DGVATFYNLIFRQPVGDR-VILLCNSVTCWIKGCDKVQAAITENLGIGLGETTADNAFTL 126

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             V C GAC  AP++M+G D ++DL P  +E+ +
Sbjct: 127 LPVTCLGACDRAPVMMVGDDLHQDLDPAEIEKAL 160


>gi|94985020|ref|YP_604384.1| NADH-quinone oxidoreductase, E subunit [Deinococcus geothermalis
           DSM 11300]
 gi|94555301|gb|ABF45215.1| NADH dehydrogenase subunit E [Deinococcus geothermalis DSM 11300]
          Length = 203

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 16  FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            ++  +    + ++ SRYP  P   +SA++PLL   Q+ EG+VS   +  +A +      
Sbjct: 1   MTYFADKQPLLADIFSRYPATPQGRRSALMPLLREVQDAEGFVSEVRMAEIAELCGTTAT 60

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY+ +   P G R H+QVC T  C L G ++L +   +++   P     DG  
Sbjct: 61  EVRSVMSFYSTYHTLPTG-RYHLQVCSTLMCALAGSDELWDYLVSELDVVPGEVTPDGRF 119

Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQGDTIRP 182
           S ++VEC G+C  AP+V +  +  YE +T  + + ++ A      DT  P
Sbjct: 120 SVQKVECLGSCGTAPVVQLNDEGYYERVTRTKCDRLLAALRA---DTPPP 166


>gi|15679544|ref|NP_276661.1| NADH dehydrogenase subunit E [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622669|gb|AAB86022.1| NADP-reducing hydrogenase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 149

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  + + Y  +  +S +IP+L   Q+  G++   A+E VA+   ++   +  +ATFY 
Sbjct: 3   EELKRIFAGY--TGHKSEIIPILQDIQDAYGYLPEDALEEVASFTGVSRAHLYGVATFYA 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           QF+  P G +  + VC  T C + G E++++     +  +      D   S E V C G 
Sbjct: 61  QFRFKPRGRKH-IMVCTGTACHVSGAEQVLDALERHLGIEEGDVTDDMEYSLESVGCIGC 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168
           C  AP  M+  +    + P R+ +I
Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVGKI 144


>gi|114567217|ref|YP_754371.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338152|gb|ABI69000.1| NADH:ubiquinone oxidoreductase 24 kD subunit NuoE [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 166

 Score =  181 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE+     ++IS +P  +    +I ++        ++ R+A+E+ A  + + + +V  +A
Sbjct: 7   EENIEGFRKIISGFPGEKR--YIIAIMHELSRCYRYLPRSALELTAEYVGVPFSQVYSMA 64

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L P G R +++VC  T C ++G   L++     +   P    +D   S E V 
Sbjct: 65  TFYRAFSLQPRG-RFNIKVCDGTTCHIKGSNILLDEIHKNLGIGPGETTADREFSLETVN 123

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP +++ +  Y  +    L+EII  +  G
Sbjct: 124 CIGACAIAPALLVNERVYPRVNAAALKEIIKEYRGG 159


>gi|126656035|ref|ZP_01727419.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
           CCY0110]
 gi|126622315|gb|EAZ93021.1| bidirectional hydrogenase complex protein HoxE [Cyanothece sp.
           CCY0110]
          Length = 171

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +E VA+ L +   RV  +ATFY  F L P G   
Sbjct: 31  NHYRQDALIEILHKAQEAFGYLEPDILEYVAHALKLPLSRVYGVATFYHLFSLKPSGKHT 90

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G +K++   + ++  K     +D  +S     C GAC  AP ++   
Sbjct: 91  CV-VCLGTACYVKGSDKVLTALQQELGIKSGETTTDKQISLLSARCLGACGIAPAIVFDG 149

Query: 155 DTYEDLTPERLEEIIDAFST 174
           +      PE   E I  + T
Sbjct: 150 EVAGKQMPENALEKIKTWQT 169


>gi|268323920|emb|CBH37508.1| putative Fe-only hydrogenase [uncultured archaeon]
          Length = 157

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V+E+I+     + ++A++  L   Q   G++++ AI  + + LD+  + +  + TFY
Sbjct: 7   KADVDEIIN--DIGKSEAALLQCLEAVQRDVGYITQDAITYLRDELDVPSVEIYGVMTFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
                   G +  ++VC + PC L G + +IE   N++  K      D   + E V C G
Sbjct: 65  GMLTAEQQG-KYVIRVCNSLPCYLNGSKMIIETLENELGIKSGETAEDANFTLETVACLG 123

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C NAP ++I ++ Y +LT E+++EII A
Sbjct: 124 LCDNAPAMIINREIYGNLTEEKVKEIIKA 152


>gi|293607183|ref|ZP_06689525.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292814517|gb|EFF73656.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 185

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +      +++R         ++P+L   Q + G +   A++ +A  L+++   V  + TF
Sbjct: 33  TIAATARIVARLKD--LPGPLLPVLHEVQHELGCIPAEAVQTIAEALNLSRAEVHGVITF 90

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P   R  V+VC    C   G ++L    R ++        +DG  + E V C 
Sbjct: 91  YPHFRSEPA-ARHTVEVCRAESCQAMGADQLAAHARAQLGCDFHASTADGNFTLEPVYCL 149

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170
           G C  +P VMI    +  +TP +L+ ++ 
Sbjct: 150 GLCAQSPAVMIDGQPHARVTPAKLDRLLA 178


>gi|320161183|ref|YP_004174407.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
 gi|319995036|dbj|BAJ63807.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
          Length = 159

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            + +  +IP+L     Q G++    +E VA +L +   +V  +ATFY    +  +G R  
Sbjct: 23  GKTREELIPILQEINRQYGFIPSQGLEEVARLLQIPKSQVFSVATFYHMLNVKEMG-RHI 81

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           +  C + PC + G  ++    + ++         D   S   V C G C   P+++I +D
Sbjct: 82  ILFCESAPCHVVGGREVWRRLKQELKIDAGETTPDKKWSLVTVSCLGVCGVGPVIVIDED 141

Query: 156 TYEDLTPERLEEIIDAFS 173
            Y ++TPE + +I+  ++
Sbjct: 142 MYGNVTPEMIPDILARYN 159


>gi|150018924|ref|YP_001311178.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905389|gb|ABR36222.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 164

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 19  SEESAIWVNEVI--SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++    +++++  + Y  ++    +I ++   Q++  ++   A+  +A  L ++  +V 
Sbjct: 5   NQKEIKKLDDILISNNYDKTQ----IITIMQEIQKEYRYLPEEALCYIAKELKISEAKVY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSW 135
            +ATFY  F L P G +  +++C  T C +R  + ++   ++++          D   + 
Sbjct: 61  GVATFYENFSLEPKG-KYVIRICDGTACHVRKSDPILSEFKSELGLSEKKLTTDDMHFTV 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           E V C GAC  AP+  +    Y  +TPE+  +++     
Sbjct: 120 ETVSCLGACGLAPVCTVNDVVYPSMTPEKARKLVKQLKE 158


>gi|71892263|ref|YP_277997.1| NADH dehydrogenase subunit E [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796369|gb|AAZ41120.1| NADH dehydrogenase I chain E [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 173

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           F  S+E    + E  + Y   R  S  I  L   Q+  GWV   AI ++A IL ++   +
Sbjct: 19  FQLSQEECNAIQEECTHYEDMRAVS--IEALKIIQKNHGWVPDEAIILIAKILCISAADL 76

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY Q    PVG R  ++ C +  C L GCEK+       ++       SD   + 
Sbjct: 77  EGVATFYNQIFRQPVG-RHIIRYCDSAVCYLVGCEKIKNTLTYLLNITVGSTTSDNRFTL 135

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C  AP++MI KD Y  + PE + +++  +
Sbjct: 136 LPTCCLGICDKAPVIMIDKDIYPYIVPETITKLLGQY 172


>gi|194288742|ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222577|emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 181

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
                A++P+L   Q+ +G++   A+ V+A  L+++   V  + TFY  F+  P G R  
Sbjct: 31  QHMPGALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHFRQQPAG-RHV 89

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           VQVC    C   G   L E  +  +       ++DG ++ E V C G C   P VM+G+ 
Sbjct: 90  VQVCRAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQ 149

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIR 181
            +  +   R + ++            
Sbjct: 150 LHGYVDAARFDALVRTLRARSTAAPA 175


>gi|223984600|ref|ZP_03634727.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
           12042]
 gi|223963447|gb|EEF67832.1| hypothetical protein HOLDEFILI_02023 [Holdemania filiformis DSM
           12042]
          Length = 164

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             +E+S   ++ ++ R+        ++  L   Q++ G++   A+E +A    ++   V 
Sbjct: 3   KLNEQSVQVIDRIVDRHRGRPGPVKLM--LHDVQKELGYIPFEAMEKIAAASGVSAAEVY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFYTQF   P G +  + VC  T C ++G   L++   +    K    ++DG  S +
Sbjct: 61  GVVTFYTQFTTEPKG-KHVINVCMGTACYVKGSADLLQRICDLTGTKVNQTSADGLFSLD 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLT-----PERLEEIID 170
              C GAC  AP+ ++    Y + T      +R++ II 
Sbjct: 120 ATRCLGACGLAPVAILDDQVYGNATSSTALEDRIKAIIK 158


>gi|126665579|ref|ZP_01736561.1| ATP synthase subunit E [Marinobacter sp. ELB17]
 gi|126630207|gb|EBA00823.1| ATP synthase subunit E [Marinobacter sp. ELB17]
          Length = 178

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P +  +S E    + + I+         A++P+L   Q++ G+V   A+ ++A +L    
Sbjct: 17  PVAGDWSPE---IIRQEIAA--LQHKPGALLPILHAIQDRVGYVPEDAVPIIAEMLQQTR 71

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  + +FY  F+  P G+   ++VC    C  RG   L    + ++        +D  
Sbjct: 72  ADIHGVISFYHHFRTHPSGS-NLLEVCRAEACQARGGRALERHVQERLSVGYHDTTADNE 130

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +   V C G C   P + +  D    +TP++ ++++DA +T
Sbjct: 131 FTLVPVYCLGNCACGPSIRVNNDIIGRVTPQKFDQLVDALTT 172


>gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
 gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
          Length = 714

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M    +A+   Q S+   S E    +   ++R+   +    ++ LL   Q+  G++ RAA
Sbjct: 1   MPHHPIAQP--QESAPLLSPEQQDALTHCLARF--GQEPGGLLELLHSLQDALGFIPRAA 56

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A  L+++   V  + ++Y   +  P G R  +Q+C    C  RG + L    +  +
Sbjct: 57  VPAIAEALNLSRAEVHGVVSYYPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQETL 115

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
             +    ++DG+++ E V C G C  +P VM+ + + +  +T +RL+ +++     + +T
Sbjct: 116 GCQAHGTSADGSVTLEPVYCLGLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 175


>gi|319789710|ref|YP_004151343.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
           ammonificans HB-1]
 gi|317114212|gb|ADU96702.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermovibrio
           ammonificans HB-1]
          Length = 160

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%)

Query: 20  EESAIWVNEVIS--RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           EE    V E++S  RYP    +S  +P L  A++    +    + ++A+ L++  + V E
Sbjct: 4   EEFREAVKELVSSGRYPS--KKSCTLPALWIAEKNFPRIDHEIMRIIASELEIPLVEVEE 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            A FY  F   P G +  ++VC    CML G E+++E     +   P     DG  + EE
Sbjct: 62  AAEFYAMFHTKPKG-KYVIRVCTNLSCMLNGAEEIVEELSRLLGISPGETTPDGLFTLEE 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            EC G C  AP + + ++ + ++T E+L  I++ F
Sbjct: 121 YECMGLCDGAPALTVNEERFLNVTKEQLPAILEKF 155


>gi|218244990|ref|YP_002370361.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8801]
 gi|218165468|gb|ACK64205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8801]
          Length = 179

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +E +A  L +   RV  +ATFY  F L P G  +
Sbjct: 36  NHYRQDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPSGEHS 95

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  T C ++G +K++   + ++  K      D  +      C GAC  AP V+   
Sbjct: 96  CI-VCMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDG 154

Query: 155 DTYEDLTPE 163
           +    + PE
Sbjct: 155 EVAGKVEPE 163


>gi|307153310|ref|YP_003888694.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7822]
 gi|306983538|gb|ADN15419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7822]
          Length = 179

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 1/142 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  +A  L +   +V  +ATFY  F L P G   
Sbjct: 39  NQYRQDALIEVLHKAQEAFGYLEDDVLLYIARHLKLPLSQVYGVATFYHLFSLKPSGEHT 98

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G +K++     ++  K    ++DG +S     C GAC  AP V+   
Sbjct: 99  CV-VCLGTACYVKGGDKILSELEKQLGVKVGETSADGKVSLVSARCIGACGIAPAVVFDG 157

Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
                   E + + I  + + +
Sbjct: 158 AVAGKQDLEAVSQKIKTWQSPE 179


>gi|307297601|ref|ZP_07577407.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916861|gb|EFN47243.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 165

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 42  VIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +I  L   Q+  G ++   A EV+  +      R+ E+ TFYT F     G +  V+VC 
Sbjct: 28  LINTLHAIQDHYGNFIPIEAAEVLKELTGTPLSRIYEVLTFYTMFSTHKRG-KYVVRVCK 86

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           + PC + G + +I+  +N +         DG  + EE  C G C  +P++MI  + Y +L
Sbjct: 87  SLPCHVTGGQAVIDSLKNTLEIGFGETTEDGLFTLEETSCLGLCGVSPVMMINDEAYGNL 146

Query: 161 TPERLEEII 169
           TP+R+ EII
Sbjct: 147 TPKRVSEII 155


>gi|197117836|ref|YP_002138263.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087196|gb|ACH38467.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 152

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++ +I ++     QS++I +L+  Q +  W+ + A++ V   LD+   R+  I TFY  
Sbjct: 7   KIDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYKA 64

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P G R  + VC  T C +RG +++++   + I  K    ++D   S E V C G C
Sbjct: 65  FSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDADLKFSLETVNCLGCC 123

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              P+++I  + + ++ P +  E++  +
Sbjct: 124 ALGPVMVIDGEYHGNVAPAQSAEVLKNY 151


>gi|300087355|ref|YP_003757877.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527088|gb|ADJ25556.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 166

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 6/140 (4%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EESA  +         SR +SA+IPLL   Q++ G++   A+   A  L ++   V  +A
Sbjct: 9   EESATRIAA-----GFSRDRSALIPLLQALQQEFGYLPPEALSAAAERLKLSESAVYGVA 63

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FYTQF+  P G R  ++VC  T C + G EK+++  R  +  +P   ++DG  S E V 
Sbjct: 64  SFYTQFRFQPSG-RHIIKVCRGTACHVGGGEKILDELRRGLDVEPGGTSADGEYSLETVA 122

Query: 140 CQGACVNAPMVMIGKDTYED 159
           C GAC  AP+V++ ++    
Sbjct: 123 CVGACALAPVVLVNEEIIGR 142


>gi|257058014|ref|YP_003135902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8802]
 gi|256588180|gb|ACU99066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           8802]
          Length = 179

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +E +A  L +   RV  +ATFY  F L P G  +
Sbjct: 36  NHYRQDALIEILHKAQESFGYLEPDVLEYIARGLKLPLSRVYGVATFYHLFSLKPNGEHS 95

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  T C ++G +K++   + ++  K      D  +      C GAC  AP V+   
Sbjct: 96  CI-VCMGTACYVKGSDKILAALQQELGIKSGETTEDNQVFLTSARCLGACGIAPSVIFDG 154

Query: 155 DTYEDLTPE 163
           +    + PE
Sbjct: 155 EVAGKVEPE 163


>gi|114328596|ref|YP_745753.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316770|gb|ABI62830.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Granulibacter bethesdensis CGDNIH1]
          Length = 159

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +FS E A     +I  +     + A++P+L   Q + G+V    + ++A+ L+++   V 
Sbjct: 9   AFSAERAAR---IIDTHRD--QEGAMLPILHDLQAEFGYVPEEVVPMLADALNVSRAEVH 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY  F+  P G R  +++C    C   G + L +  R K+         +G+++ E
Sbjct: 64  GVISFYHDFKNHPPG-RHVLKLCRAEACQAMGADTLADHVREKLRVDWHGTTVNGSVTLE 122

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            V C G C  AP  M+  + +  L  + ++ ++++
Sbjct: 123 PVFCLGLCACAPAAMLDNELHGRLDQDHVDTLLES 157


>gi|85860697|ref|YP_462899.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
 gi|85723788|gb|ABC78731.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
          Length = 150

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++++I ++      SA+I +L+  QE+  W+ + A+E V+  L +    V   ATFY 
Sbjct: 4   ERIDQIIEKH--QGASSALIQILLDIQEENHWLPKEALERVSEKLQIPITTVRHAATFYK 61

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G R  V VC  T C +RG  ++++  +     KP   + D   S E V C G 
Sbjct: 62  VFSTVPKG-RHQVHVCLGTACHVRGATRVLDTVQESTGIKPGETDLDLKFSLETVNCLGC 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C   P++ I    Y   TP +  +++  +
Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149


>gi|197301315|ref|ZP_03166400.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
           29176]
 gi|197299633|gb|EDY34148.1| hypothetical protein RUMLAC_00046 [Ruminococcus lactaris ATCC
           29176]
          Length = 158

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 4/160 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+IS++      +++IP++   Q +  ++    +  VA  L +   +   
Sbjct: 2   LDQTYYKKADEIISQH--GLEPASLIPIIQDIQSEYRYLPPELLRYVAKKLGINEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    ++E   +++   +      D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCNGTACHVRKSIPILERLYSELGLSEEKATTDDMLFTLE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            V C GAC  AP++ +    Y  +TP+   E+I      +
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPGMTPDAAAELIHELRGAE 158


>gi|117620389|ref|YP_856315.1| NADH dehydrogenase subunit E [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561796|gb|ABK38744.1| NADH-quinone oxidoreductase chain e [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 180

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S+     +      Y   R  +A I  L   Q+  GWV   AI  +A  L +    V  
Sbjct: 28  LSQAERDAIEHEKHHYEDPR--AASIEALKIVQQARGWVPDGAIHAIAAELGIPASDVEG 85

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY+Q    PVG R  ++VC +  C + G E+L+   +  +   P   ++DG  +   
Sbjct: 86  VATFYSQIFRQPVG-RHIIRVCDSMVCYINGHEQLLAGLKEVMDLAPGQTSADGRFTLLP 144

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           V C G C   P +MI  DTY  L    L + ++A+
Sbjct: 145 VCCLGNCDKGPALMIDDDTYGGLDAVSLLKTLEAY 179


>gi|170076826|ref|YP_001733464.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
           sp. PCC 7002]
 gi|169884495|gb|ACA98208.1| hydrogenase subunit E ([NiFe] hydrogenase subunit) [Synechococcus
           sp. PCC 7002]
          Length = 163

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 1/141 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q  +I +L +AQE  G++    +E VA  L +   RV  +ATFY  F L P G   
Sbjct: 23  NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHT 82

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G ++L++     +H KP     D  +S     C GAC  AP V+   
Sbjct: 83  CV-VCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 141

Query: 155 DTYEDLTPERLEEIIDAFSTG 175
           +       +++   +   S G
Sbjct: 142 EVCGKQNADQVMARLRQLSEG 162


>gi|317404655|gb|EFV85051.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           xylosoxidans C54]
          Length = 185

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
            +++R         ++P+L   Q + G +   A++ +A  L+++   V  + TFY  F+ 
Sbjct: 39  RILARLKD--QPGPLLPVLHAVQHELGCIPAEAVQTIAEALNLSRAEVHGVITFYPHFRS 96

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  ++VC    C   G E+L    R  +         DG  + E V C G C  +
Sbjct: 97  EPAG-RHTLEVCRAESCQAMGGEQLAAHARQALGCDFHASTRDGDFTLEPVYCLGLCAQS 155

Query: 148 PMVMIGKDTYEDLTPERLEEII 169
           P VM+    +  +TP +L+ ++
Sbjct: 156 PAVMLDGQPHARVTPAKLDRLL 177


>gi|207723877|ref|YP_002254275.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
 gi|207742739|ref|YP_002259131.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
           IPO1609]
 gi|206589082|emb|CAQ36044.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum MolK2]
 gi|206594133|emb|CAQ61060.1| nadh dehydrogenaseI(chain e) protein [Ralstonia solanacearum
           IPO1609]
          Length = 141

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           +  L  AQ ++GWVS   ++ VA  L+M  + V E+ATFY  +   PVG R  + VC   
Sbjct: 1   MAALAVAQSEKGWVSPEVMQFVAEYLEMPPVWVEEVATFYNMYDTKPVG-RFKLSVCTNL 59

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYEDLT 161
           PC L G E+  +  + K+        +DG  + +E EC GAC +AP++++        ++
Sbjct: 60  PCALSGGERAADYLKQKLGIGFNETTADGNFTLKEGECMGACGDAPVMIVNNTHMCSFMS 119

Query: 162 PERLEEIIDAFST 174
            E+L+ +I     
Sbjct: 120 NEKLDALIADLQA 132


>gi|209525023|ref|ZP_03273567.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
           CS-328]
 gi|209494432|gb|EDZ94743.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Arthrospira maxima
           CS-328]
          Length = 178

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G   
Sbjct: 37  SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLKLPLSQVYGVATFYHLFSLKPSGAHT 96

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G  +++     K   K      DG +S     C GAC  AP  +   
Sbjct: 97  CV-VCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155

Query: 155 DTYEDLTPERLEEIIDAFS 173
                 TPE     ++ + 
Sbjct: 156 KVAGQQTPEMAVARLEQWQ 174


>gi|262376774|ref|ZP_06070002.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
 gi|262308484|gb|EEY89619.1| NADH dehydrogenase subunit I E [Acinetobacter lwoffii SH145]
          Length = 169

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    +   +  YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  
Sbjct: 17  LTADEIHDIEHHMGHYPYPR--AACLDALKCVQRRNGWVDDAQMNAIAQMLSMSVADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +     +DG  +   
Sbjct: 75  VATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMIDEDTHGLVEVTSVKQLLEKY 168


>gi|99034475|ref|ZP_01314468.1| hypothetical protein Wendoof_01000731 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 114

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA++L + +IRV E+A FYT + L PVG +  +Q+C TTPC L   E+++   + K+
Sbjct: 1   MRYVADMLHIPHIRVYEVANFYTMYNLKPVG-KYLIQICRTTPCWLCNSEEVLNTFKKKL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                    D   + +EVEC GACVNAP+V I  D YE+LTPE++E II   S
Sbjct: 60  GINIGETTKDNLFTLKEVECLGACVNAPVVQINNDFYENLTPEKVENIITELS 112


>gi|225175129|ref|ZP_03729125.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169305|gb|EEG78103.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 171

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    V+E+++    +R    +IP+L   QE+ G++ R A+E VA+ + MA + V  +A
Sbjct: 9   EEILNSVDEILTSSEINRR--NLIPILQSIQERLGYLPRPALEKVADAMGMAAVDVYGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY QF+  P G    ++VC  T C + G +  ++    +++        D     E V 
Sbjct: 67  TFYNQFRFHPPGE-HQIKVCMGTACYIVGGQIAMDSFARRLNISEGETTPDRKYGLERVA 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           C G C  AP+V++ +     +TP R++ I+ +     G+  +PG
Sbjct: 126 CVGCCTMAPVVVVDEQMEGSVTPTRVDGILLSLEA-NGNGEKPG 168


>gi|85860878|ref|YP_463080.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
 gi|85723969|gb|ABC78912.1| NADH-quinone oxidoreductase chain E [Syntrophus aciditrophicus SB]
          Length = 150

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++++I ++      SA+I +L+  QE+  W+ + A++ V+  L +    V   ATFY 
Sbjct: 4   ERIDQIIEKH--HGASSALIQILLDIQEENHWLPKEALDRVSEKLQVPLTTVRHAATFYK 61

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G R  V VC  T C +RG  ++++        KP   + D   S E V C G 
Sbjct: 62  VFSTVPKG-RHQVHVCLGTACHVRGANRVLDTVEEMTGIKPGETDLDLKFSLETVNCLGC 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C   P++ I    Y   TP +  +++  +
Sbjct: 121 CALGPVMEIDGKVYGKATPSKTIDVLKKY 149


>gi|301060220|ref|ZP_07201087.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445732|gb|EFK09630.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 195

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 20  EESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            + A  + ++  R     + +  +IP+L   QE+  ++S  A+++VA+ L++A   V  +
Sbjct: 25  AQEAAMLEDIEGRLREFEKERKNLIPMLQMIQERHAYLSADALQMVADKLELALCEVYGV 84

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY QF+  P G + H++VC  T C +RG + ++E    K+         D   S E V
Sbjct: 85  ATFYNQFRFHPPG-KHHMKVCLGTACHVRGGDIILENFERKLGIGHGETTPDREFSIERV 143

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            C G C  AP+V++ +  +  + P ++E +I
Sbjct: 144 ACVGCCALAPVVIVDETAHGHVAPSKVEGLI 174


>gi|297618251|ref|YP_003703410.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146088|gb|ADI02845.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 180

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 20  EESAIWV----NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           EE+   +      +I +YP  +    ++P++   Q++  ++ + A+E+ A  +      V
Sbjct: 16  EETREGIRGDVQPIIDKYPAEKR--YILPIMQDIQKRFNYLPKEALEIAAAYVGAPVSLV 73

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY  F L P G R H ++C  T C ++  + +++     I  +P     DG  S 
Sbjct: 74  YSMATFYKAFSLVPRG-RVHFRMCDGTACHIKSSQVILDEIHKCIGIRPGETTPDGQFSL 132

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           E V C GAC  AP+++  +  +  +TP  + EII  +
Sbjct: 133 ETVNCLGACALAPVLVANQKVHPKVTPAAMREIIKQY 169


>gi|327188942|gb|EGE56134.1| formate dehydrogenase subunit gamma [Rhizobium etli CNPAF512]
          Length = 182

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 48  EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 106

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG+++ E V C G C  AP  M+  + Y 
Sbjct: 107 CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 166

Query: 159 DLTPERLEEIIDAFST 174
            +  +   E++     
Sbjct: 167 RVDDQLATELVAEARR 182


>gi|296132536|ref|YP_003639783.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola sp. JR]
 gi|296031114|gb|ADG81882.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermincola potens
           JR]
          Length = 179

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 17  SFSEESAIWVNEV----ISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
             SE+    +  V    + +    R +  ++P+L   Q   G+V + A++ ++  LD+  
Sbjct: 4   QLSEQELKEIRSVTEKALQKNNADREK--LLPILQEVQHNLGYVPKQAMQQISEALDIPE 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           + +  + TFY QF+L+P G +  ++VC  T C + G   +++    +++ K      D  
Sbjct: 62  VEIYGVTTFYNQFRLNPPG-KHQIKVCMGTACHMTGGHIIMDSFARRLNIKEGETTPDRE 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            S E V C G C  AP+V+I +     + P R++ I+
Sbjct: 121 FSLERVACVGCCALAPVVVIDEKIEGKVRPTRVDGIL 157


>gi|222053328|ref|YP_002535690.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221562617|gb|ACM18589.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 150

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++++I ++     +S++I +L+  Q +  W+ + A+  VA  L +   R+  IATFY 
Sbjct: 4   AKIDQIIDKHNGE--ESSLIQILLDIQSEHHWLPKEALNRVAEKLQVPMSRIQHIATFYK 61

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F L P G R  V VC  T C +RG +++++  ++    KP   +++   S E V C G 
Sbjct: 62  AFSLVPKG-RHEVHVCMGTACHVRGAQRVLDTVQDATGIKPGETDAELKFSLETVNCLGC 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170
           C   P++ +    + ++ P ++  +++
Sbjct: 121 CALGPVMEVDGKHHGNIAPSQIASVLN 147


>gi|262369336|ref|ZP_06062664.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
 gi|262315404|gb|EEY96443.1| NADH dehydrogenase subunit I E [Acinetobacter johnsonii SH046]
          Length = 169

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    +   I  YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  
Sbjct: 17  LTTDEIHEIEHHIGHYPYPR--AASLDALKCVQRRNGWVDDAQLNAIAQLLTISVADLEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY +    PVG R  + +C +  C L G E L E  + ++  +     +DG  +   
Sbjct: 75  VATFYNRIYRQPVG-RNVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C   P +M+ +DT+  +    ++++++ +
Sbjct: 134 ICCLGNCDKGPTLMVNEDTHGLVEVSSVKQLLEKY 168


>gi|124515812|gb|EAY57321.1| putative NADH dehydrogenase (ubiquinone), E subunit [Leptospirillum
           rubarum]
          Length = 168

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E +   + ++   +  S  + AV+ +L + QE+ G+V   A+E V  IL++   ++  + 
Sbjct: 8   EVTYEDIEDICEEF--SNREGAVVQILQKVQEKYGYVPADALEFVGEILEIPKSKMYGVL 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF   P G +  +++C  T C +RG   L++  + ++H +P     D   + E V 
Sbjct: 66  TFYSQFYQEPRG-KFVLKICVGTACHVRGAGLLVDKVKEELHIEPGENTEDMLFTLEPVA 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C G+C  APM M+    Y  L+ +++  +I  F         P
Sbjct: 125 CLGSCALAPMAMVQGTAYGKLSADKMVSLIRQFEEEAEKEEEP 167


>gi|150391793|ref|YP_001321842.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951655|gb|ABR50183.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 159

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           S +EE+   +  V+        +  ++P+L  AQ+  G +     + +   + +    + 
Sbjct: 5   SLTEENFQKLQIVME--EEKGEKGPLMPVLHEAQKIFGCIPLEVQKKICEEMKIPLSEIY 62

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+QF L P G    + VC  T C ++G + +++     I  K    + DG  S  
Sbjct: 63  GVITFYSQFSLEPKGD-YVIGVCMGTACYVKGAQPILDKVSELIGAKAGCNSGDGRFSLV 121

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
              C GAC  AP++ + +D Y  L    +  I++ +  
Sbjct: 122 ATRCIGACGLAPILTVNEDVYGRLKLTDIPGIVEKYQK 159


>gi|15966764|ref|NP_387117.1| formate dehydrogenase subunit gamma [Sinorhizobium meliloti 1021]
 gi|307301592|ref|ZP_07581351.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti BL225C]
 gi|307316384|ref|ZP_07595828.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti AK83]
 gi|15076036|emb|CAC47590.1| Putative NAD-dependent formate dehydrogenase gamma subunit
           [Sinorhizobium meliloti 1021]
 gi|306898224|gb|EFN28966.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti AK83]
 gi|306903290|gb|EFN33879.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sinorhizobium
           meliloti BL225C]
          Length = 159

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  +IP+L   Q++ G+V   ++ V+A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 25  EGPLIPILHEIQDEFGYVPEESLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  +  +         DG ++ E V C G C  +P  M+  + + 
Sbjct: 84  CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143

Query: 159 DLTPERLEEIIDAFST 174
            L    LE ++     
Sbjct: 144 RLDETVLEALVAEARR 159


>gi|218509481|ref|ZP_03507359.1| formate dehydrogenase subunit gamma [Rhizobium etli Brasil 5]
          Length = 159

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG+++ E V C G C  AP  M+  + Y 
Sbjct: 84  CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143

Query: 159 DLTPERLEEIIDAFST 174
            +  +   E++     
Sbjct: 144 RVDDQLATELVAEARR 159


>gi|160942427|ref|ZP_02089734.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434679|gb|EDP12446.1| hypothetical protein CLOBOL_07311 [Clostridium bolteae ATCC
           BAA-613]
          Length = 162

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +E+I  +  +R + ++IP++   QE+  ++    +  VA  + +   +   +A+FY
Sbjct: 7   YKKADEIIEMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKEIGITEAKAYSVASFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQ 141
             F     G +  +++C  T C +R    +++     +      H   D   + E V C 
Sbjct: 65  ENFSFEEKG-KYIIKICDGTACHVRKSMPILDYLYKTLKLNAKKHTTEDALFTVETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           GAC  AP + + +  Y  ++PE+++++++    G+ D 
Sbjct: 124 GACGLAPAITVNEKVYPKMSPEKMKKLLEEIKRGEPDA 161


>gi|154247409|ref|YP_001418367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
           autotrophicus Py2]
 gi|154161494|gb|ABS68710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Xanthobacter
           autotrophicus Py2]
          Length = 176

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 11  FQPSSFSFSEESAI--------WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
            +P  F  SE S             +VIS       + A +P+L   QE  G+V   A+ 
Sbjct: 1   MRPHGFWESETSMAVYEDWSTERAAQVIS--ENRHLEGATMPILHALQETFGFVPDPAVP 58

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
           ++A  L+++   V  + TFY  F+    G R  V++C    C   G + L +    K+  
Sbjct: 59  MIAESLNLSRAEVYGVLTFYHDFRREAPG-RHVVKLCAAEACQSVGGKALAQYVEEKLGV 117

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                + DG ++ E + C G C  AP  ++       L  + ++EI D F+ G+
Sbjct: 118 DMGSTSPDGRVTLEPIYCLGLCACAPSALVDGQLVGRLDRDAIDEIADCFANGK 171


>gi|220909417|ref|YP_002484728.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7425]
 gi|219866028|gb|ACL46367.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Cyanothece sp. PCC
           7425]
          Length = 176

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 1/140 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
                A+I +L +AQE  G++    +  +A  L +   RV  +ATFY  F L P G    
Sbjct: 38  QYRPEALIEVLHKAQESFGYLEEEVLVYIARGLKLPLSRVYGVATFYHLFSLKPSGAHTC 97

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V VC  T C ++G  K+ E    ++  K      DG +S     C GAC  AP+V+    
Sbjct: 98  V-VCLGTACYVKGSNKVAEGLEQELGIKVGETTPDGKISLMAARCVGACGIAPVVVFDGA 156

Query: 156 TYEDLTPERLEEIIDAFSTG 175
                 PE     I  +  G
Sbjct: 157 VAGKQEPENTLARIKEWELG 176


>gi|295112091|emb|CBL28841.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Synergistetes
           bacterium SGP1]
          Length = 163

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             +++     + +++ R+     Q+ +IP++   Q    ++ R A+E++A+ L ++  +V
Sbjct: 1   MRYTDVDVSRIRDILLRHTAD--QTNLIPIMQGVQALYNYLPRPALEMIADYLHVSISKV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLS 134
             +ATFY  F L+  G +  ++ C  T C +R    ++   R ++          D   +
Sbjct: 59  YGVATFYENFSLNAKG-KHIIRCCDGTACHVRKGATILGAIRKELGLTAAQSTTDDMLFT 117

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            E V C GAC   P+V++  + +  +T ++  E++++    + 
Sbjct: 118 VEIVSCLGACGLGPVVVVDDEVHPTMTVDKARELLESIRGKEA 160


>gi|218961479|ref|YP_001741254.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730136|emb|CAO81048.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit gamma [Candidatus Cloacamonas
           acidaminovorans]
          Length = 160

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           ++ +I +L  AQE  G++     E +A  L++   ++  + TFY  F ++P G + ++ V
Sbjct: 26  RNPLIEILRSAQEIFGYLPVEVQEFIAQELNIPVNQIYGVVTFYNFFTMTPRG-KYNLNV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C ++G  +L+++   ++  +      DG  +   V C GAC  AP+ +IG++TY 
Sbjct: 85  CLGTACFVKGAPRLVQMLSEELGIQMGETTKDGIFTMSAVRCVGACSLAPVFVIGEETYG 144

Query: 159 DLT-PERLEEIIDAFS 173
            +   +++ EI+  + 
Sbjct: 145 RIDSKDKIAEILKRYK 160


>gi|160878250|ref|YP_001557218.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
 gi|160426916|gb|ABX40479.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           phytofermentans ISDg]
          Length = 161

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             ++    ++ +++ +     +S VI ++   Q+   ++    +  +A  L ++  ++  
Sbjct: 2   LGQDEKGLIDNILTAH--DYNKSHVIAIMQEVQKVYRYLPEEVLCYIAEKLKLSEAKIYG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWE 136
           +ATFY  F L P G +  +++C  T C +R    ++E  R  +     +    D   + E
Sbjct: 60  VATFYENFSLEPKG-KYVIKICDGTACHVRKSIPILEEFRKVLGVTEKNPTTDDMIFTVE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            V C GAC  AP+  +    +  +TPE+ + +I+    
Sbjct: 119 TVSCLGACGLAPVCTVNDVVHAAMTPEKAKALIEQLRE 156


>gi|317133526|ref|YP_004092840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
           harbinense YUAN-3]
 gi|315471505|gb|ADU28109.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ethanoligenens
           harbinense YUAN-3]
          Length = 160

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E++   V+ ++ R+  S   SA+I +L   QE+  ++   A+  V+    ++   +  +A
Sbjct: 4   EQTIAAVDAIVDRHDAS--PSALIAILEEIQEECHYLPGDALARVSERTGVSESEIFSVA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEV 138
           TFY  F L+  G +  ++VC  T C +R    ++   R+K+          D   + E V
Sbjct: 62  TFYKNFSLTAKG-KYVIKVCDGTACHVRKSIPILNALRDKLGVSEAKPTTDDQLFTVETV 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C GAC  AP++ +    +  +TPE    ++D    
Sbjct: 121 SCLGACGLAPVMTVNDHVHPKMTPETALAVVDGLRE 156


>gi|254480843|ref|ZP_05094089.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
 gi|41582333|gb|AAS07947.1| NADH-quinone oxidoreductase, E subunit [uncultured marine bacterium
           463]
 gi|214038638|gb|EEB79299.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 167

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + S+E    ++  I+  P     +  I  L   Q   GWVS  ++  +A  L M+   + 
Sbjct: 12  ALSQEELQAIDAEIAHVP--YRDAVAIDALKIVQAHRGWVSDESLSAIAAHLHMSADELD 69

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            IATFY      PVG +  + +C +  C ++GC+ L +    ++  +     SD   +  
Sbjct: 70  GIATFYNLIYRRPVGDK-VILLCNSISCWIKGCDNLQQRITEELGVELGETTSDNRYTLL 128

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            V C GAC  AP++M+G + +EDL  E +  I+
Sbjct: 129 PVTCLGACDKAPVMMVGDELHEDLCEESIIRIL 161


>gi|169830326|ref|YP_001716308.1| hypothetical protein Daud_0108 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637170|gb|ACA58676.1| Protein of unknown function DUF166 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 377

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +  E+    +    S Y   R  S ++P+L  AQE  G++   A+  +A  L +    V 
Sbjct: 225 ALKEDIEAGLKSAFSFYKGHR--SELVPILQDAQEVFGYLPETAMLEIARFLRLPESHVY 282

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFY QF     G R  ++VC  T C ++G ++++E    ++         D   S E
Sbjct: 283 GVATFYDQFHFIRRG-RNQIKVCCGTACHVKGADRVLEEFERQLGVGHGETTPDYEYSLE 341

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            V C GAC  AP+V++GK+ Y  +TP R   ++
Sbjct: 342 RVACVGACALAPVVVMGKEVYGQMTPGRARSVL 374


>gi|309791452|ref|ZP_07685957.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
           trichoides DG6]
 gi|308226488|gb|EFO80211.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Oscillochloris
           trichoides DG6]
          Length = 174

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +   + R        A+I +L +AQE  G++S   +  +A  L +   RV  +ATFY
Sbjct: 19  LKILEATMKR--NQYRPDALIEVLHKAQEIYGFLSPDLLVRIARSLHLPPSRVYGVATFY 76

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L+P GT     +C  T C +RG  +L+    +       H   DG LS   V C G
Sbjct: 77  HFFSLAPQGT-HTCTICLGTACYVRGAAELMARAEHAAGIAAGHTTPDGHLSLASVRCIG 135

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP V+I  +    +TP+ +   + A 
Sbjct: 136 ACGIAPAVVIDGNVTGHMTPDDIAAQVTAL 165


>gi|53804526|ref|YP_113817.1| NADH dehydrogenase subunit E [Methylococcus capsulatus str. Bath]
 gi|53758287|gb|AAU92578.1| NADH dehydrogenase I, E subunit [Methylococcus capsulatus str.
           Bath]
          Length = 157

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + + +    +      +P     +A I  L   Q   GW+S   ++ +A +L M+   +
Sbjct: 1   MTLTSDEIQAILREAGHFP--HPSAAAIEALNIVQRSHGWISDELLQEIAELLGMSPAEL 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             IATFY      PVG R  +  C +  C + G E        K+         +G  + 
Sbjct: 59  DSIATFYNLIYRRPVGRR-VIHYCNSVSCWMLGAEDNRRHLSEKLGIAVGETTGNGEYTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             + C GAC  AP++MIG +T+ ++ P RL++I+
Sbjct: 118 LPIVCLGACDKAPVLMIGDETHFNVDPARLDDIL 151


>gi|22652020|gb|AAN03564.1|AF381045_1 hydrogenase subunit E [Synechococcus sp. PCC 7002]
          Length = 170

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q  +I +L +AQE  G++    +E VA  L +   RV  +ATFY  F L P G   
Sbjct: 30  NQYRQDTLIEILHKAQEVFGYLEDEVLEYVARGLKLPLSRVYGVATFYHLFSLKPKGKHT 89

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G ++L++     +H KP     D  +S     C GAC  AP V+   
Sbjct: 90  CV-VCLGTACYVKGSQELLDKIDETLHIKPGETTPDDQISLVTARCIGACGIAPAVVYDD 148

Query: 155 DTYEDLTPERLEEIIDAFSTG 175
           +       + L   +   S G
Sbjct: 149 EVCGKQNADHLMARLRQLSEG 169


>gi|189218229|ref|YP_001938871.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
           infernorum V4]
 gi|189185087|gb|ACD82272.1| NADH-ubiquinone oxidoreductase chain E [Methylacidiphilum
           infernorum V4]
          Length = 171

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
               ++IS+YP S+ +SA +PLL   Q+  G+VSR  +E +A  L++  I V EIATFY 
Sbjct: 17  DEAEKIISQYPVSK-RSASLPLLHLWQKHFGYVSREGVEWIAQKLELEPIAVEEIATFYP 75

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH--QKPLH---RNSDGTLSWEEV 138
             +  P+G +   +VC T  C L G  +L +  +   +  Q+  H    + DG  S E V
Sbjct: 76  MIRHRPLG-KYQFKVCRTLSCALAGSYQLFDYIKQNCNALQEVGHHVYLSEDGQFSVEFV 134

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           EC  AC NAP++MI ++ + D+T E+++ I+     
Sbjct: 135 ECLAACGNAPVMMINEEEWMDVTKEKIQGILAQLRK 170


>gi|298293799|ref|YP_003695738.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
           DSM 506]
 gi|296930310|gb|ADH91119.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Starkeya novella
           DSM 506]
          Length = 157

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S      VI  +  S  +  ++P+L   QE  G+V  A + ++A +L+++   V  + TF
Sbjct: 8   SEERARAVIEEF--SHLEGPLMPMLHAVQETFGYVPEAVVPMLAEMLNISRAEVHGVVTF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  +++C    C   G + L +   +++  K     +DG ++ E + C 
Sbjct: 66  YHDFRHEPAG-RHVLKLCRAEACQAAGGDALADHAEHRLGCKLGETTADGRVTVEPIYCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C  AP  M+       L   RL+ +I  
Sbjct: 125 GLCATAPSAMLDGRIVARLNERRLDALIAE 154


>gi|222087422|ref|YP_002545959.1| formate dehydrogenase [Agrobacterium radiobacter K84]
 gi|221724870|gb|ACM28026.1| formate dehydrogenase [Agrobacterium radiobacter K84]
          Length = 159

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   QE+ G+V +  + ++A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHGIQEEFGYVPQDTLPLIAKALNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  +  +         DG+++ E V C G C  AP  M+  + Y 
Sbjct: 84  CRAEACQSMGGDQLAERVKRLLGIDFHQTTLDGSVTLEPVYCLGLCACAPAAMLDGELYG 143

Query: 159 DLTPERLEEIIDAFST 174
            L  E  E+++     
Sbjct: 144 RLDDEGAEDLVKEARR 159


>gi|227204477|dbj|BAH57090.1| AT4G02580 [Arabidopsis thaliana]
          Length = 163

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA ++++A IRV E+ATFY+ F  + VG + H+ VCGTTPCM+RG   +     + +
Sbjct: 1   MNAVAKVIEVAPIRVYEVATFYSMFNRAKVG-KYHLLVCGTTPCMIRGSRDIESALLDHL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK----------DTYEDLTPERLEEIID 170
             K      DG  S  E+EC G CVNAPM+ +            + +ED+TPE++ EI++
Sbjct: 60  GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 119

Query: 171 AFSTGQGDTIRPGPQI-DRISSAPAGGLTSLLDNN 204
                +G+    G Q   RI   P GG  +LL   
Sbjct: 120 KLR--KGEKPPHGTQNPKRIKCGPEGGNKTLLGEP 152


>gi|331696854|ref|YP_004333093.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951543|gb|AEA25240.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 158

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 25  WVNEVISRYPPSRC--QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
            V E++ R   +    +  ++P+L   Q + G V  + + ++A  L+++   V  + TFY
Sbjct: 9   RVAEIVGRIVEAHRGSRGPLLPILHAVQAELGHVPPSVVPLLAERLNLSRAEVHGVVTFY 68

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F+ +P G R  V+VC    C   G + L+E     +  +      DG ++ +EV C G
Sbjct: 69  RDFRAAPPG-RVTVRVCRAEACQAVGGQALLEHAVASLGVERGETTPDGAVTLDEVFCLG 127

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C   P V +G   +  +TP RL+ +I    
Sbjct: 128 NCALGPAVQVGDRLHGRVTPARLDALIGQCR 158


>gi|33519941|ref|NP_878773.1| NADH dehydrogenase subunit E [Candidatus Blochmannia floridanus]
 gi|33504287|emb|CAD83179.1| NADH dehydrogenase I chain E [Candidatus Blochmannia floridanus]
          Length = 154

 Score =  178 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             F++E    +    + Y   R  +A I  L   Q+++GWVS  AI++V+ +L ++   V
Sbjct: 1   MKFNKEELDIIRLECTHYENDR--AASIEALKIIQKRQGWVSDDAIKLVSQVLHISESDV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             IATFY Q    PVG +  V+ C +  C + GCE++ +   + +  K  +   D   + 
Sbjct: 59  EGIATFYNQIFRQPVG-KYIVRYCDSNVCYINGCEQIQQTLESSLGIKIGNTTQDNKFTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
               C G C  +P++MI K  Y  + P  + +I+ ++
Sbjct: 118 LPTCCMGLCDKSPVLMIDKKIYSCIVPSDIMQILRSY 154


>gi|312879270|ref|ZP_07739070.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782561|gb|EFQ22959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 162

 Score =  178 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++ RYPP      ++ +L   Q    ++ R  +  VA  L +   RV  +ATFY   
Sbjct: 15  LEALLRRYPP--HPRYLLAILQDVQSACRFLPRTVLGRVAEYLRVPESRVFGVATFYKAL 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G +  V+VC  T C LRG  K++E     +  +      DG  S E V C GAC 
Sbjct: 73  SLTPRGRK-TVKVCMGTACHLRGAPKVLEALEAALGIRSGGTTEDGAFSLETVNCLGACA 131

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            AP+V +    Y  ++P +++ +++ 
Sbjct: 132 LAPVVTVEDTPYGTMSPAKVQAMLEE 157


>gi|269792084|ref|YP_003316988.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099719|gb|ACZ18706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 156

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E++ RYP  R    ++  L   Q +   V R A+E  +    +   RV  +ATFY 
Sbjct: 8   DRLKEILHRYP--RHPRFLLAFLQDVQREFKHVPREAMEASSERFMVPMSRVYSVATFYR 65

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
              L P G +  ++VC  T C LRG  +++E     +  +      DG  S E V C GA
Sbjct: 66  ALSLVPRGRK-TIKVCMGTACHLRGAPRVLETIEEALQVRCGGTTQDGEFSVEAVNCLGA 124

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C  AP+VM+    Y  +T  ++ E+++ 
Sbjct: 125 CALAPVVMVEDRCYGSMTAAKVREMLEE 152


>gi|304313909|ref|YP_003849056.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587368|gb|ADL57743.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 149

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  + S Y  +   S +IP+L   Q+  G++   A+E VA    ++   V  +ATFY 
Sbjct: 3   KKLKGIFSGY--TGHASEIIPILQDIQDVYGYLPEHALEEVAGFTGVSKTHVYGVATFYA 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           QF+  P G +  + VC  T C + G E++++     +         D   S E V C G 
Sbjct: 61  QFRFKPKGRKH-IMVCTGTACHVSGAEQVLDALERHLGIGEGDVTEDMEYSLESVGCIGC 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEI 168
           C  AP  M+  +    + P R+ +I
Sbjct: 120 CSLAPCAMVNDEVVSRIKPSRVSKI 144


>gi|78222327|ref|YP_384074.1| bidirectional hydrogenase complex protein HoxE [Geobacter
           metallireducens GS-15]
 gi|78193582|gb|ABB31349.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Geobacter metallireducens GS-15]
          Length = 205

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 6/174 (3%)

Query: 10  EFQPSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +   +    + +     V   I ++       A+I +L  AQE  G++S   +  VA  L
Sbjct: 21  QTPSTPTELTSDPRFQAVERTIKQF--QCRADALIEVLHVAQEAFGYLSDELMAHVARQL 78

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            + + +V  +ATFY  F L P G    V VC  T C ++   +++     +   K     
Sbjct: 79  KIPFSQVYGVATFYHFFSLEPRGAHTCV-VCTGTACYVKRSAEILVRLEQEFRVKAGKTT 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            DG L+   + C G+C  AP++++  +T    TP+     + A    +    RP
Sbjct: 138 EDGGLTLSTIRCLGSCGQAPVMVLDGETVGQCTPDSAVVAVKALQ--ESGRPRP 189


>gi|190893705|ref|YP_001980247.1| formate dehydrogenase, gamma subunit [Rhizobium etli CIAT 652]
 gi|190698984|gb|ACE93069.1| formate dehydrogenase protein, gamma subunit [Rhizobium etli CIAT
           652]
          Length = 159

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHEVQQEFGYVPQEALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG+++ E V C G C  AP  M+  + + 
Sbjct: 84  CRAEACQSMGGDALAERVKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVHG 143

Query: 159 DLTPERLEEIIDAFST 174
            +  +   E++     
Sbjct: 144 RVDEQLATELVAEARR 159


>gi|284050503|ref|ZP_06380713.1| bidirectional hydrogenase complex protein HoxE [Arthrospira
           platensis str. Paraca]
 gi|83630909|gb|ABC26906.1| HoxE [Arthrospira platensis FACHB341]
 gi|291570292|dbj|BAI92564.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 179

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G   
Sbjct: 37  SQYSQDALIEVLHKAQEAFGYLEEDVLIYVARQLQLPLSQVYGVATFYHLFSLKPSGAHT 96

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G  +++     K   K      DG +S     C GAC  AP  +   
Sbjct: 97  CV-VCLGTACYVKGSGEVLAALEEKTGIKSGETTPDGQISIVTARCIGACGIAPAAVFDG 155

Query: 155 DTYEDLTPERLEEIIDAFS 173
                 TPE     +  + 
Sbjct: 156 KVAGQQTPEMAVARLQKWQ 174


>gi|227823605|ref|YP_002827578.1| formate dehydrogenase subunit gamma [Sinorhizobium fredii NGR234]
 gi|227342607|gb|ACP26825.1| NAD-dependent formate dehydrogenase gamma subunit [Sinorhizobium
           fredii NGR234]
          Length = 159

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L   Q++ G+V  A + V+A  L+++   V  + TFY  F+  P G R  +++
Sbjct: 25  EGPLLPILHEIQDEFGYVPEACLPVIARELNLSRAEVYGVVTFYHDFREHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L E  +  +         DG ++ E V C G C  +P  M+  + + 
Sbjct: 84  CRAEACQSMGGDRLAERAKALLGIDFHETTPDGAVTLEPVYCLGLCSCSPSAMLDGEVHA 143

Query: 159 DLTPERLEEIIDAFST 174
            L    LE ++     
Sbjct: 144 RLDDAELEALVAEARR 159


>gi|225175950|ref|ZP_03729942.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168538|gb|EEG77340.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 182

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
            + ++ ++ R+       + IP+L   Q   G+V+   ++ V+ +  +    +  I TFY
Sbjct: 18  LLAIDAIVQRHNAD--PGSAIPILQDIQNTFGYVAPEVLQRVSELSGILESELYSIVTFY 75

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +QF++ P+G    +QVC  T C L G E++ E   ++   K    + DG  + E+V C G
Sbjct: 76  SQFRMEPIGE-NLIQVCHGTACHLAGAERVSEAIMHETGAKDGGTSPDGKFTLEKVACLG 134

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            C  AP++ + ++TY  + P  + +++   + GQ +  + G
Sbjct: 135 CCSLAPVITVNEETYGRVAPNEVGKVLKEIN-GQTEDKKAG 174


>gi|167761073|ref|ZP_02433200.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
 gi|167661307|gb|EDS05437.1| hypothetical protein CLOSCI_03471 [Clostridium scindens ATCC 35704]
          Length = 161

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
              E S   +  +I  Y  S+  +  + ++   Q    +V R  +E +A  L      + 
Sbjct: 3   ELLEVSKESIERIIHSYECSQRYA--LAIMQDMQRTYQYVPREGLEALAEYLGCPVSALY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            +ATFY    L P G    ++ C  T C +RG   LI+    ++  +P     DG  S+E
Sbjct: 61  AMATFYKALSLVPKGE-HTIKCCDGTACHIRGASTLIDGIERELGIRPGETTKDGLFSFE 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            V C G+C  AP++++    Y  +T E+L EII+    G
Sbjct: 120 TVNCLGSCALAPVLVVDDVYYGKVTLEKLREIIEDVRKG 158


>gi|253701407|ref|YP_003022596.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
 gi|251776257|gb|ACT18838.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 152

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++ +I ++     QS++I +L+  Q +  W+ + A++ V   LD+   R+  I TFY 
Sbjct: 6   AKIDNIIDKHNAE--QSSLIQILLDIQSEHNWLPKQALDRVGERLDVPMSRIQHITTFYK 63

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G R  + VC  T C +RG +++++   + I  K    +++   S E V C G 
Sbjct: 64  AFSQVPKG-RHQIHVCMGTACHVRGAQRVLDTISDAIGIKAGETDAELKFSLETVNCLGC 122

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C   P+++I  + + ++ P +  E++  +
Sbjct: 123 CALGPVMVIDGEYHGNVAPAQSAEVLKNY 151


>gi|325262542|ref|ZP_08129279.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
 gi|324032374|gb|EGB93652.1| NADH dehydrogenase I, E subunit [Clostridium sp. D5]
          Length = 157

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +      +E+I+ +     Q+++IP++   Q +  ++    +  VA  L +   +   
Sbjct: 2   LDQTYYDKADEIIASHGAE--QASLIPIIQDIQTEYRYLPPELLSYVAGKLGINEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    +++   +++   K      D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCDGTACHVRKSIPILDRLYSELGLSKEKATTDDMLFTLE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP++ +    Y  +TP+   ++I    
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDTAADLIRELR 155


>gi|306821644|ref|ZP_07455242.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550389|gb|EFM38382.1| NADH-quinone oxidoreductase subunit E [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 179

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P+L  AQ   G++ +  +E++++ L      +  +ATFY+QF   P G +  + V
Sbjct: 42  RGAVMPILQEAQRIFGYIPKEIVEIMSHRLGKHSSEIYGVATFYSQFTFIPKG-KYAISV 100

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  T C + G  +++E    ++  K      D   S  E  C G C  AP+V +    Y 
Sbjct: 101 CLGTACYVNGANEILEEFEKQLKIKKGETTKDLLFSIVETRCVGECAQAPVVTVNDKVYP 160

Query: 159 DLTPERLEEIIDAFSTGQ 176
             +   +++++  +   +
Sbjct: 161 KFSVSDVDDLLTEYREME 178


>gi|320160661|ref|YP_004173885.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
 gi|319994514|dbj|BAJ63285.1| bidirectional hydrogenase E subunit [Anaerolinea thermophila UNI-1]
          Length = 168

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V   + R+      +A+I  L   QE  G+VSR A+  VA  L++   +V  +ATFY 
Sbjct: 18  KIVEATMRRH--GYASTALIETLHSIQETFGFVSREALNYVAESLNIPPAKVFGVATFYN 75

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F L+PVG      +C  T C ++G  ++++  + +   +P     DG L++    C GA
Sbjct: 76  LFNLNPVGE-HVFSLCTGTACYVKGAGEIVDFMKEEFGLEPGQTTPDGKLTFMVARCVGA 134

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP++++  +    L  E ++  I  +
Sbjct: 135 CGLAPVMILDGEVVGKLGVEEMKAKIREW 163


>gi|254426024|ref|ZP_05039741.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
 gi|196188447|gb|EDX83412.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Synechococcus sp. PCC 7335]
          Length = 192

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 7   AEEEFQPSSFSFSE----------ESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEG 54
           +    QP+S   +           E   W  +   + R+       A+I +L +AQE   
Sbjct: 4   SPASTQPTSTESTPVQGHSVEGDLEDKRWQLLAATMKRH--QYRSDALIEVLHKAQELFD 61

Query: 55  WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
           ++S   +  VA  L +   +V  +ATFY  F L+P G      VC  T C ++G  +L+ 
Sbjct: 62  YLSPTLLAEVAKSLQLPLSQVYGVATFYHFFSLAPSG-HHSCTVCLGTACYVKGAAQLLA 120

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
               ++  +P    +DG +S     C GAC  AP+V++        T E + + IDA
Sbjct: 121 KLEQRLGIQPGQTTADGEMSLSTARCLGACGIAPVVVVDDAIAGHQTTETIIQRIDA 177


>gi|88602557|ref|YP_502735.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Methanospirillum
           hungatei JF-1]
 gi|88188019|gb|ABD41016.1| NADH dehydrogenase subunit E [Methanospirillum hungatei JF-1]
          Length = 160

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++E+I +YP        + +L   Q QE  +    +++V+  LD+    +  + TF
Sbjct: 2   DEKRLDEIIEKYP--YPAGRTLGVLREIQIQERHIPMDTLKLVSEKLDLPLSELFALVTF 59

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-------KPLHRNSDGTLS 134
           Y+ F L PVG    + VC  TPC ++G EK++E     +         K L    D   +
Sbjct: 60  YSFFSLKPVGE-HLITVCMGTPCHVKGAEKILETLEEHLGLSGEVQDGKYLQTTPDNKFT 118

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            E   C GAC  AP++ +  + +  +TPER+ EI++ +
Sbjct: 119 VEIARCFGACSMAPVLHVDGELHGYVTPERIPEILEMY 156


>gi|119385583|ref|YP_916638.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Paracoccus
           denitrificans PD1222]
 gi|119376178|gb|ABL70942.1| formate dehydrogenase gamma subunit [Paracoccus denitrificans
           PD1222]
          Length = 159

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
           +S +   +  + ++E+I+ +     +  ++P+L   Q + G+V   A  V+A  L M   
Sbjct: 2   TSPATDADFLLRLDEIIAAHKG--REGPLLPILHDLQAEWGYVPEEAQPVLAEALGMTRA 59

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY  F+  P G R  +++C    C   G E L +  R  +         DG L
Sbjct: 60  EVHGVVSFYHDFRDHPHG-RHVLRLCRAEACQSMGAEALADEVRAALGIDWHETTPDGRL 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           + E V C G C  AP   +G+      +  ++++++  
Sbjct: 119 TLEPVFCLGLCACAPSAQMGERLIGRASLAKVQKLVAE 156


>gi|168700383|ref|ZP_02732660.1| NADH dehydrogenase (ubiquinone) [Gemmata obscuriglobus UQM 2246]
          Length = 160

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + SE+    +   I +YP  R Q+  +P L    ++   VS  AI  +A IL++    V 
Sbjct: 3   ALSEDMKNRIRAFIPKYP--RKQAVTLPALHLVHDELRTVSNEAIVEIAEILELHPSEVH 60

Query: 77  EIATFYTQFQLSPVGTR---AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +  TFY  F+    G +     + VC    CMLRG  +LIE C +K+        +DG +
Sbjct: 61  DTMTFYAFFKGE--GEKLGTTRLWVCRGLACMLRGAYELIEHCEHKLGVHCGQTTADGKV 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + E  EC GAC  AP  +I      ++TPE+ +++I    
Sbjct: 119 TLEFAECIGACDGAPACLIEDVHAMNVTPEKADQLITELK 158


>gi|86359440|ref|YP_471332.1| formate dehydrogenase subunit gamma [Rhizobium etli CFN 42]
 gi|86283542|gb|ABC92605.1| formate dehydrogenase, gamma subunit protein [Rhizobium etli CFN
           42]
          Length = 159

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P+L + Q++ G+V + A+ V+A  L+++   V  + TFY  ++  P G R  +++
Sbjct: 25  EGPLLPILHQVQQEFGYVPQQALPVIAEELNLSRAEVHGVMTFYHDYRDHPAG-RHVLKL 83

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G + L E  +  +         DG+++ E V C G C  AP  M+  + Y 
Sbjct: 84  CRAEACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLGLCACAPSAMLDGEVYG 143

Query: 159 DLTPERLEEIIDAFST 174
            L  +   E++     
Sbjct: 144 RLDDQLATELVAEARR 159


>gi|187477323|ref|YP_785347.1| formate dehydrogenase subunit gamma [Bordetella avium 197N]
 gi|115421909|emb|CAJ48429.1| NAD-dependent formate dehydrogenase gamma subunit [Bordetella avium
           197N]
          Length = 155

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                + +R+       A++PLL   QE+ G +    + V+A  L ++   V  + TFY 
Sbjct: 7   AVAQRLAARFAD--QPGALLPLLHALQEELGCIPPETVGVLAEALSLSRAEVHGVITFYP 64

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+  P G R  +Q+C    C   G + L    + ++      R++DG  + E   C G 
Sbjct: 65  HFRTEPAG-RHVLQICRAEACQAMGGDALAAHAQARLGCDFHARSADGAFTLEPAYCLGL 123

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C  +P +M+    +  +TP RL+ +ID 
Sbjct: 124 CAQSPALMLDGRPHARMTPARLDRLIDQ 151


>gi|224456276|ref|ZP_03664749.1| NADH dehydrogenase I, E subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 131

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 2/131 (1%)

Query: 43  IPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +  L   Q+Q G +++      +A  L ++ + V E+ATFY  + L PVG R  + VC  
Sbjct: 1   MEGLHILQDQNGGYLTDDLQTALAEYLQVSKVDVYEVATFYCMYNLKPVG-RHKLNVCTN 59

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             CML G  +++     K+  KP     DG ++ +EVECQGAC  +PM+ + K  YE+LT
Sbjct: 60  VSCMLNGAYEILAHIEKKLAIKPGETTKDGRITLKEVECQGACCGSPMLEVDKVFYENLT 119

Query: 162 PERLEEIIDAF 172
            E++ +IID+ 
Sbjct: 120 IEKVNQIIDSL 130


>gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum
           seropedicae SmR1]
 gi|300073591|gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  +I+         A++P+L   QE+ G++   A+ ++A  L+++   V  + +FY 
Sbjct: 10  AAVRGIIAERKE--MAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+  P G R  VQVC    C  RG E L E  +N +       ++DG  + E V C G 
Sbjct: 68  FFRQEPAG-RHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQ 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C   P + +  + +  +  ++ + +I A
Sbjct: 127 CAIGPNLTLDDELHARVDADKFKRLIQA 154


>gi|312144097|ref|YP_003995543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904748|gb|ADQ15189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 147

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   + ++I        + +++  L   Q+  G++    IE +A   +++      + +F
Sbjct: 3   NEKIIEDII------FEEGSLLEELHNVQDTYGYIPENEIENLAEKFNLSRANAYGVISF 56

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+     P G +  +++C +  C L   E L++  ++ +  +    + D   + E VEC 
Sbjct: 57  YSMLYTEPTG-KYIIRICDSISCHLNESESLLKAVKSYLGIENNETSKDKKFTLEVVECL 115

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170
           G C   P++MI    YE LT  +  EI++
Sbjct: 116 GHCAEGPVMMINDQIYEKLTKTKAIEILN 144


>gi|224824819|ref|ZP_03697926.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
 gi|224603312|gb|EEG09488.1| NADH-quinone oxidoreductase, E subunit [Lutiella nitroferrum 2002]
          Length = 166

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68
            S +S   ++  +++YP  + +SAV+  L  A E+            +++  IE VAN L
Sbjct: 2   LSAQSLALIDREVAKYPADQKRSAVMGALRIALEERRSTGETPEARCLNQEVIEFVANYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           ++  +   E+ATFY  + + PVG +  + VC   PC L G     E    K+       +
Sbjct: 62  EIPPVAAYEVATFYNMYDMKPVG-KYKITVCTNLPCALSGGVNAAEYISGKLGIAIGETS 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFS 173
           +DG  +  E EC GAC +AP++++        +TPE +++ +    
Sbjct: 121 TDGMYTLLEGECMGACGDAPVLLVNNHSMCSFMTPEAIDKKLAELK 166


>gi|225026579|ref|ZP_03715771.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
 gi|224956071|gb|EEG37280.1| hypothetical protein EUBHAL_00829 [Eubacterium hallii DSM 3353]
          Length = 158

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 4/155 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               + +I  +     ++++IP++   Q +  ++    +  VA+ + +   +   +ATFY
Sbjct: 7   YDKADTIIKSHGA--MEASLIPIIQDIQSEYRYLPPELLSYVADQIGITEAKAFSVATFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
             F   P G +  ++VC  T C +R    ++E   +++   K      D   + E V C 
Sbjct: 65  ENFSFEPKG-KYVIKVCDGTACHVRKSTTILERIYSELGLSKDKVTTEDMLFTVETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           GAC  AP++ +    Y  +TP+   +++      +
Sbjct: 124 GACGLAPVLTVNDKVYPSMTPDDAAQLLQKLREEE 158


>gi|284009323|emb|CBA76484.1| NADH-quinone oxidoreductase chain E [Arsenophonus nasoniae]
          Length = 153

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             Y  +R  +A I  L   Q++ GWV   AI  +A++L +    V  +ATFY+Q    PV
Sbjct: 14  HHYEDAR--AASIEALKIVQKKRGWVEDGAIYAIASLLGIPASDVEGVATFYSQIYRQPV 71

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  ++ C +  C + G + +       +   P    +DG  +     C G C   P +
Sbjct: 72  G-RHIIRYCDSVVCHITGYQGIETEIIKLLQIAPGQTTADGRFTLLPTCCLGNCDKGPTM 130

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  + P  ++ +++ +
Sbjct: 131 MIDEDTHSHVKPSDIQRLLEQY 152


>gi|167746891|ref|ZP_02419018.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
 gi|167653851|gb|EDR97980.1| hypothetical protein ANACAC_01603 [Anaerostipes caccae DSM 14662]
          Length = 157

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++      +E+I+ +     Q+A+IP++   Q +  ++    +  VA+ L +   +   
Sbjct: 2   LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    ++E   +++   +      D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP++ +    Y  +TP+   E+I    
Sbjct: 119 TVSCLGACGLAPVITVNDKVYPAMTPDAAAELIRELR 155


>gi|189485527|ref|YP_001956468.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287486|dbj|BAG14007.1| NAD-dependent Fe-hydrogenase 24kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 157

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +S +IP+L   QE+  ++ +  +  +A  L+ +   V  +ATF++ F L   G R  +++
Sbjct: 22  KSKLIPILQAVQEEYKYLPKEILVFIALSLNTSPAGVYGVATFFSHFTLKHKG-RHIIKI 80

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           C    C ++    LI   +NK+  K       D   + E V C GAC  AP+ +I +D Y
Sbjct: 81  CDGIACHVKKSNSLINALKNKLGLKEAEYSTKDVFFTIETVSCLGACGLAPVFLIDEDIY 140

Query: 158 EDLTPERLEEIIDA 171
             +TP++  E+ID 
Sbjct: 141 GQMTPDKAVELIDK 154


>gi|34496400|ref|NP_900615.1| NADH dehydrogenase subunit E [Chromobacterium violaceum ATCC 12472]
 gi|34102253|gb|AAQ58619.1| NADH-ubiquinone oxidoreductase, chain E [Chromobacterium violaceum
           ATCC 12472]
          Length = 166

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG---------WVSRAAIEVVANIL 68
            S +S   ++  +++YP  + +SAV+  L  A ++            ++   IE VAN L
Sbjct: 2   LSAQSLALIDREVAKYPADQKRSAVMGALRIALDERRAAGETPEARCLNPELIEFVANYL 61

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
            +A +   E+ATFY  + + PVG +  + VC   PC L G     E    K+       +
Sbjct: 62  GIAPVAAYEVATFYNMYDMKPVG-KFKITVCTNLPCALSGGVNAAEYISKKLGIAIGETS 120

Query: 129 SDGTLSWEEVECQGACVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173
           +DG  +  E EC GAC +AP++++        +TPE +++ +    
Sbjct: 121 ADGMYTLLEGECMGACGDAPVLLVNNHKMCSFMTPEAIDKKLAELK 166


>gi|167755801|ref|ZP_02427928.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
 gi|167704740|gb|EDS19319.1| hypothetical protein CLORAM_01316 [Clostridium ramosum DSM 1402]
          Length = 242

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
              +E    ++E+++++   +    ++  L   Q + G++   A+E ++  + +   +V 
Sbjct: 82  KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVY 139

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+QF   P G +  + VC  T C + G + ++++       +    + DG  S +
Sbjct: 140 GVVTFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 198

Query: 137 EVECQGACVNAPMVMIGKDTYE 158
              C GAC  AP+V +    + 
Sbjct: 199 ATRCVGACGLAPVVSVDGIVFG 220


>gi|159186285|ref|NP_355959.2| formate dehydrogenase subunit gamma [Agrobacterium tumefaciens str.
           C58]
 gi|159141419|gb|AAK88744.2| NADH ubiquinone oxidoreductase chain E [Agrobacterium tumefaciens
           str. C58]
          Length = 159

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            + A  V+ VI+       +  ++P+L   QE+ G++  +A +++A+ L+++   V  + 
Sbjct: 8   ADEAARVSAVIN--ECLHLEGPLLPILHAVQEEFGYIPESAKQIIASALNISRAEVHGVV 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+  P G R  +++C    C   G E L E  +N++  +     +DG+++ E V 
Sbjct: 66  TFYPDFRDHPQG-RHVLKLCRAEACQSMGGEPLAETIKNRLGLEWHETAADGSVTLEPVF 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  AP +M+  + +  L  + L  I+     
Sbjct: 125 CLGLCAQAPALMLDGEVHARLDDDCLGNILTEARR 159


>gi|189425851|ref|YP_001953028.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189422110|gb|ACD96508.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 171

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
                A+I +L  AQE  G++SR  +  VA  L +   +V  +ATFY  F L P G  + 
Sbjct: 28  QYQPDALIEVLHTAQEAFGYLSRELLAHVAARLKLPESQVFGVATFYHFFTLRPKGEHSC 87

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  T C ++G  +++         K     +DG LS     C G C  APM+M+   
Sbjct: 88  I-VCTGTACYVKGAGEILGRLEQAAGIKAGQTTADGRLSLGTARCLGNCSLAPMMMLDDT 146

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            +    PE  +  +D  +         G
Sbjct: 147 VHG---PESPDGAVDKLNRLLEVPHEQG 171


>gi|260576445|ref|ZP_05844435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
           SW2]
 gi|259021328|gb|EEW24634.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodobacter sp.
           SW2]
          Length = 157

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  V E+++ +     +  ++P+L   Q   G V + A+ ++A  L+++   V  + +FY
Sbjct: 9   AARVAEILAAH--QGLEGPLLPILHALQAAFGHVPQEALPLIAKNLNLSRAEVHGVMSFY 66

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F+ +P G R  +++C    C   G EKL    R  +  +      DG ++ E V C G
Sbjct: 67  HDFRAAPAG-RHVLKLCRAEACQAMGAEKLAAHARTSLGIEWHETTRDGAVTLEPVFCLG 125

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  AP  ++       +   R + ++     
Sbjct: 126 LCACAPAALMDGKVVGRVDEARFDALVAEVRA 157


>gi|182677975|ref|YP_001832121.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633858|gb|ACB94632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 157

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +      +I+++     + A +P+    Q+  G+V   A+ ++A  L+++   V  + TF
Sbjct: 8   NDAVAATIIAQHKA--QEGATLPIFHALQKAFGYVPAEAVPMIAEALNLSRAEVHGVLTF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G    +++C    C   G + L      ++  K      D  ++ E V C 
Sbjct: 66  YHDFRSEPPGC-HILKLCRAEACQAAGGDHLATGVERQLGIKLGETTPDQQVTLEPVFCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C  AP  M+       +   RL+ +++   +
Sbjct: 125 GLCAVAPSAMLDDQPIGRVDAARLDALLNEVRS 157


>gi|317471700|ref|ZP_07931041.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900804|gb|EFV22777.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 157

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++      +E+I+ +     Q+A+IP++   Q +  ++    +  VA+ L +   +   
Sbjct: 2   LNQAYYDKTDEIIASH--GLTQAALIPIIQDIQAEYRYLPPELLSYVASKLSIDEAKAYS 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWE 136
           +ATFY  F   P G +  ++VC  T C +R    ++E   +++   +      D   + E
Sbjct: 60  VATFYENFSFEPKG-KYIIKVCNGTACHVRKSVSILERLYSELGLSEEKATTDDMMFTLE 118

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            V C GAC  AP++ +    Y  +TP+   E+I    
Sbjct: 119 TVSCLGACGLAPVLTVNDKVYPAMTPDAAAELIRELR 155


>gi|298384457|ref|ZP_06994017.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
 gi|298262736|gb|EFI05600.1| Fe-hydrogenase, gamma subunit [Bacteroides sp. 1_1_14]
          Length = 303

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  +  ++        +I +L  AQ   G++      ++A+ L +   +V  + TFYT
Sbjct: 12  EQVKTICDKH--GNNAGELINILHEAQHLHGYLPEEMQRIIASKLRIPVSKVYGVVTFYT 69

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F ++P G +  + VC  T C +RG EKL+E  +  +  +      DG  S + + C GA
Sbjct: 70  FFTMTPKG-KHPISVCMGTACYVRGSEKLLEEFKRVLGIEVGETTPDGKYSLDCLRCVGA 128

Query: 144 CVNAPMVMIGKD 155
           C  AP+VMIG+ 
Sbjct: 129 CGLAPVVMIGEK 140


>gi|254441245|ref|ZP_05054738.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Octadecabacter antarcticus 307]
 gi|198251323|gb|EDY75638.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Octadecabacter antarcticus 307]
          Length = 182

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
              +   + ++++R+  S  +  ++P+L   Q + G++    ++++A+  ++    V  +
Sbjct: 30  DAATTEIMQDILARH--SVQEGPLLPILHSVQAEFGFIPSDVVQIIADHQNITRAEVHGV 87

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+ +P G +  +++C    C   G   L +    K+        ++G ++ E V
Sbjct: 88  ISFYHDFRDAPAG-KHTIKICRAEACQAVGSNALSKRVLEKLGVDWGGTTANGAVTIEAV 146

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C   P  M+       +   +L++++  
Sbjct: 147 YCLGLCACGPAAMVDNKVVGRVDAAKLDKLLAE 179


>gi|160902611|ref|YP_001568192.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
 gi|160360255|gb|ABX31869.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Petrotoga mobilis
           SJ95]
          Length = 154

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           ++  L   QE  G++S   I  +A   D+   R+  + +FY+ F L P G +  V+VC +
Sbjct: 24  LLEELHDIQETYGFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTG-KYIVRVCDS 82

Query: 102 TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT 161
             C L     L+   ++ +  +      D   + E  EC G C   P++M+    Y  LT
Sbjct: 83  VSCRLNESADLVRALKDYLKVEENETTKDKKFTLEVAECLGHCDEGPVMMVNDTYYTHLT 142

Query: 162 PERLEEIIDAF 172
             +  +I+D+ 
Sbjct: 143 VTKAIQILDSL 153


>gi|307544489|ref|YP_003896968.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
 gi|307216513|emb|CBV41783.1| formate dehydrogenase subunit gamma [Halomonas elongata DSM 2581]
          Length = 163

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A++P+L   Q++ G+V  AA+ ++A  L++    V  + +FY  F+ S  G+   V+
Sbjct: 22  KPGALLPILHAIQDRVGFVPDAAVPIIAESLNLTRAEVHGVISFYHHFRTSRPGS-HVVR 80

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   G   L    ++ +         D  ++ E V C G C   P + +    +
Sbjct: 81  ICRAEACQAMGARALEAHAKSSLEVDYHQTTRDQEITLEAVYCLGNCACGPSICVDDRVH 140

Query: 158 EDLTPERLEEIIDAFST 174
             +T E  + ++D   T
Sbjct: 141 GRVTTETFDRLVDDLRT 157


>gi|163782977|ref|ZP_02177972.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881657|gb|EDP75166.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
          Length = 154

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           F +E    +N+ I+ +P  R + A++  L   Q+  G+V   ++  +A++LD+    V +
Sbjct: 2   FEQELLEKLNQHINYFP--RKEQAILVCLHEIQDHYGYVPPESLRPLADMLDLPLNHVEQ 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +  FY  F       +  ++VC +  C   G ++L++     +  KP     DG      
Sbjct: 60  VVAFYDMFDRQ-TPAKYRIRVCVSVVCHFLGKQELLKALEKALKIKPGEVTPDGKFKIVP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           V+C GAC  AP+ M+ +DTY+    E+L E++  +
Sbjct: 119 VQCLGACSEAPVFMVNEDTYKFEGEEKLNEVLSKY 153


>gi|118579912|ref|YP_901162.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118502622|gb|ABK99104.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 169

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V+ ++ +Y      + +  +L   Q++  ++    +  V   LD+   +V  + +FY  
Sbjct: 17  EVDLILEKY--DHQPARLTLILQAIQDEYRYLPMEVLSHVIEELDIPATKVFGVVSFYAH 74

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQGA 143
           F L P G +  +++C  T C  +    ++E    K+          D   + E V C GA
Sbjct: 75  FTLEPRG-KYVIRLCDGTACHAKRSIPILEALYAKLGLSSKKVTTPDMLFTVETVTCLGA 133

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C  AP+++I ++ Y  +TP     +ID     + + 
Sbjct: 134 CGLAPVMLINEEVYGRVTPASAVALIDEIIAKEANA 169


>gi|296124093|ref|YP_003631871.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
           limnophilus DSM 3776]
 gi|296016433|gb|ADG69672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Planctomyces
           limnophilus DSM 3776]
          Length = 159

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S++    +     +YP  R  +  +P L    ++   VS  AIE +A +L++    V +
Sbjct: 4   LSDDLRARIVAEFPKYPNKR--AVTLPALHLVHDELRHVSTGAIEEIAELLELHPSEVHD 61

Query: 78  IATFYTQFQLS--PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             TFY  F+    P+G +  V VC +  C LRG E+L+     K+H  P     DG ++ 
Sbjct: 62  TMTFYQFFRTEENPLG-KHRVWVCRSISCGLRGGEELLAHMCEKLHVTPGGTTEDGKITL 120

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           E  EC G C  AP V++ +D   ++T E  +++I     
Sbjct: 121 EFAECLGVCDGAPCVLVDEDCVHNVTHEMADKLISELKA 159


>gi|222150020|ref|YP_002550977.1| formate dehydrogenase subunit gamma [Agrobacterium vitis S4]
 gi|221737002|gb|ACM37965.1| NADH dehydrogenase I chain E [Agrobacterium vitis S4]
          Length = 159

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     V  +I        +  ++P+L   Q   G V  +A  V+A  L+++   V  + 
Sbjct: 8   EADMARVEAIID--GLKHLEGPLLPILHEIQRTFGCVPDSAKPVIARALNLSRAEVHGVV 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G E L E  + ++        +DG ++ E V 
Sbjct: 66  SFYHDFRDHPSG-RHVLKLCRAEACQSLGGEPLGETIKARLGIDWHETTADGAVTLEPVF 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C G C  AP  M+  + +  L    L++++
Sbjct: 125 CLGLCACAPAAMLDGELHGRLDEHCLDDLL 154


>gi|311108351|ref|YP_003981204.1| NAD-dependent formate dehydrogenase subunit delta [Achromobacter
           xylosoxidans A8]
 gi|310763040|gb|ADP18489.1| NAD-dependent formate dehydrogenase gamma subunit [Achromobacter
           xylosoxidans A8]
          Length = 185

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +      +++R         ++P+L   Q + G +   A++ +A  L+++   V  + TF
Sbjct: 33  AIAATARILARLKD--QPGPLLPVLHAVQHELGCIPAPAVQTIAEALNLSRAEVHGVITF 90

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P   R  ++VC    C   G E L    R  +       + +G  + E V C 
Sbjct: 91  YPHFRSEPA-ARHTLEVCRAEACQAMGGEHLAAHARTALGCDFHANSRNGDFTLEPVYCL 149

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C  +P VMI    Y  +TPE+L+ ++  
Sbjct: 150 GLCAQSPAVMIDGRPYARVTPEKLDRLLAR 179


>gi|26988907|ref|NP_744332.1| formate dehydrogenase subunit gamma [Pseudomonas putida KT2440]
 gi|24983718|gb|AAN67796.1|AE016411_1 formate dehydrogenase, gamma subunit, putative [Pseudomonas putida
           KT2440]
          Length = 160

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++R        A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG++S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  LTPERL ++++    
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156


>gi|313499697|gb|ADR61063.1| Formate dehydrogenase subunit gamma [Pseudomonas putida BIRD-1]
          Length = 160

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++R        A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRILAR--DKDTPGALLPILHAVQHEMGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG++S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGSISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  LTPERL ++++    
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156


>gi|225570604|ref|ZP_03779629.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
           15053]
 gi|225160617|gb|EEG73236.1| hypothetical protein CLOHYLEM_06706 [Clostridium hylemonae DSM
           15053]
          Length = 157

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
               +EVI+ +      +++IP++   Q +  ++    +  VA  L +   +   +ATFY
Sbjct: 7   YDKADEVIASHGCGH--ASLIPIIQDIQSEYRYLPPELLSYVAGKLGITEAKAYSVATFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQ 141
             F   P G +  ++VC  T C +R    ++E   +++   K      D   + E V C 
Sbjct: 65  ENFSFEPKG-KYVIKVCDGTACHVRKSIPILERLYSELGLSKEKVTTDDMLFTLETVSCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           GAC  AP++ +    Y  +TP+   E+I    
Sbjct: 124 GACGLAPVLTVNDKVYPAMTPDAAAELIHELR 155


>gi|300087733|ref|YP_003758255.1| NADH dehydrogenase 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527466|gb|ADJ25934.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 156

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+EV+ ++      S ++ +L   Q Q  ++ R +I  +A  LD+   RV  +ATF+  F
Sbjct: 12  VDEVVVKHNGD--PSMLVAMLQDVQAQLYFLPRESIVRIAEKLDIPLTRVYSVATFFRAF 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L P G + +++VC  T C +RG EK+++    ++         D   + E   C GAC 
Sbjct: 70  SLKPRG-KHNLKVCMGTACHVRGAEKVLDKIETELCVCAGETTKDMKYTIETANCVGACA 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             P+V++  +    +T ++++ I++  +
Sbjct: 129 LGPVVVVDNEFVGQMTTDKVKTILEKCN 156


>gi|297539619|ref|YP_003675388.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
           301]
 gi|297258966|gb|ADI30811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylotenera sp.
           301]
          Length = 159

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  +IS +       A++PLL   Q+  G+V  ++   +   L ++   V  + TFY  
Sbjct: 13  RLGALISEH--QHMPGALMPLLHAIQDNIGYVPESSYSQIGKALSLSVAEVHGVVTFYHH 70

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+    G R  +Q+C    C   G E L    +  ++       SD  ++ E V C G C
Sbjct: 71  FRTHKPG-RHVMQICRAESCQSMGSEALEAHAKKCLNVDYHQTTSDDAITLEAVYCLGNC 129

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             +P VM+ ++ Y  ++ E L+ +I     
Sbjct: 130 ALSPAVMMDEEVYGRVSAEDLDALIAEARA 159


>gi|298506754|gb|ADI85477.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 191

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 8/186 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+    +  +  P   +        V   + +Y       A++ +L  AQE  G +S   
Sbjct: 1   MNSTDNSPGKGTPDGLAADPR-FKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  L +   RV  +ATFY  F L   G  + V VC  T C ++   +++    N+ 
Sbjct: 58  MNHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCTGTACYVKRSAEIVTRLENEF 116

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE----IIDAFSTGQ 176
             K     +DG L+   V C G+C  AP+V++  +T    TP+        ++   S  +
Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176

Query: 177 GDTIRP 182
            +T+RP
Sbjct: 177 AETVRP 182


>gi|315185456|gb|EFU19227.1| NADH-quinone oxidoreductase, E subunit [Spirochaeta thermophila DSM
           6578]
          Length = 164

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYIRVLEIAT 80
              ++     YPP R    ++ +L   Q+     ++    +E VA  L +    +  I +
Sbjct: 1   MAHIDRPWKAYPPRR--DNLLLILHDIQDHNPRNYLPDEEVEEVARYLGIPVSELDGIIS 58

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY+ F   P G R  +++C +  C L G   L    +  +  K      DG  + E V C
Sbjct: 59  FYSMFSRRPRG-RYVIRMCDSLACRLAGSLDLYFALQEGLGIKRGQTTPDGLFTVELVNC 117

Query: 141 QGACVNAPMVMIGKDTYEDLT 161
            G C   P +M+  + +  +T
Sbjct: 118 LGCCDKGPSLMVNDELHTRMT 138


>gi|332295876|ref|YP_004437799.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332178979|gb|AEE14668.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 156

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   V+  I ++       ++I +L   QE  G++    +  +A  L+++  ++  + TF
Sbjct: 5   NFPAVDREIKKW--GLRSESLIQILHGTQESIGYLPEEILSYIAEKLNISLSKIYGVVTF 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+L+       +  C  T C ++G EK++    NK++ KP     D   + + V C 
Sbjct: 63  YNFFKLTKDAE-HVITTCLGTACYVKGGEKILNALCNKLNIKPNEITKDNKFTVKTVRCV 121

Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
           G C  AP+++I   D Y  L+     EI++ +
Sbjct: 122 GCCGFAPVMIIDGKDIYGKLSENEAIEILERY 153


>gi|326561570|gb|EGE11911.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 46P47B1]
          Length = 169

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHYYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|262275221|ref|ZP_06053031.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
           hollisae CIP 101886]
 gi|262220466|gb|EEY71781.1| NAD-dependent formate dehydrogenase gamma subunit [Grimontia
           hollisae CIP 101886]
          Length = 171

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 76/166 (45%), Gaps = 3/166 (1%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           + +++  + V E I+         A++P+L   Q    +V  AA+ ++A  L+++   V 
Sbjct: 9   ALTDQERVVVAEAINTLKT--KPGALLPILHEIQHHLSYVPPAAVPMIARGLNLSNADVH 66

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY +F+  P G+   +Q+C    C   G + L     +++         D   + E
Sbjct: 67  GVISFYHEFRNQPPGS-HVIQICRAESCQSMGSQTLERHAFSRLGIGFHETTKDKNFTLE 125

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            V C G C+ +P V +G D + D+  +  + ++++  T   +   P
Sbjct: 126 PVYCLGNCMYSPCVRVGDDIHGDMNDDAFDSLVNSLITQVVEVKAP 171


>gi|195171381|ref|XP_002026484.1| GL15498 [Drosophila persimilis]
 gi|194111390|gb|EDW33433.1| GL15498 [Drosophila persimilis]
          Length = 190

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 2   SVRR----LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVS 57
           S+RR     A   +    F F++E+   V  +++ YP +  Q A++PLL  AQ Q GW+ 
Sbjct: 26  SMRRRSKLDACNMYDKMKFEFTKENKARVESLLTWYPEAERQGALLPLLDIAQRQHGWLP 85

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
            +A+  VA +L +  ++  E A +YT F + P G    V VC +TPC LRG + L++ C 
Sbjct: 86  ISAVVAVAEVLKIDPMQAYETAKYYTMFHMKPRGM-YVVSVCTSTPCFLRGSDDLLKACS 144

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGAC 144
             +  +P   + D   S +   C GAC
Sbjct: 145 KMLRLEPGETSKDMQFSLKVDCCLGAC 171


>gi|148548761|ref|YP_001268863.1| formate dehydrogenase subunit gamma [Pseudomonas putida F1]
 gi|148512819|gb|ABQ79679.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas putida
           F1]
          Length = 160

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++R        A++P+L   Q + G++  A++  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRILAR--DKDTPGALLPILHAVQHEIGYIPDASVPEIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  LTPERL ++++    
Sbjct: 128 CSPALELDGQVHARLTPERLRDLVNGCRE 156


>gi|270307596|ref|YP_003329654.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
 gi|270153488|gb|ACZ61326.1| [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. VS]
          Length = 155

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + TFY
Sbjct: 6   KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLGIPSIDIYGMITFY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +    +  G +  +++C + PC L G E +++   + +  +P     D   + E V C G
Sbjct: 64  SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  +P ++I    Y  LT + + E++D   T
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|27904649|ref|NP_777775.1| NADH dehydrogenase subunit E [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372476|sp|Q89AU3|NUOE_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit E; AltName:
           Full=NADH dehydrogenase I subunit E; AltName: Full=NDH-1
           subunit E
 gi|27904046|gb|AAO26880.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 171

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
              F  + +  I +  +I  Y   R  S++I +L   Q+  GW+S   I  +A IL ++ 
Sbjct: 14  DIKFKLTIQEKIEIFNIIKNYRTVR--SSLIEILKFVQKSYGWISNELITELACILKISK 71

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             + EIATFY+Q    P+G R  ++ C +  C + GCEK+       ++        D  
Sbjct: 72  CDIEEIATFYSQIFRQPIG-RNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFK 130

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +   + C G C  +P +MI  D Y ++T   +  +++++ 
Sbjct: 131 FTLLPICCLGNCDKSPTIMINDDLYSNVTEYSVIVLLESYQ 171


>gi|146341845|ref|YP_001206893.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. ORS278]
 gi|146194651|emb|CAL78676.1| putative formate dehydrogenase gamma subunit [Bradyrhizobium sp.
           ORS278]
          Length = 158

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
            A    E+I+ +  S+ + A +P+L   QE  G+V   AI ++A+ L+++   V  + TF
Sbjct: 9   DAARGAEIIAEH--SQMEGATLPILHALQETFGYVPEDAIPMIASTLNLSRAEVYGVFTF 66

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+    G R  +++C    C   G + L      K+     +  +D  ++ E + C 
Sbjct: 67  YHDFRGKKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIAMGNTTADERVTLEPIYCL 125

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C  AP  MI       L   R++ ++  
Sbjct: 126 GLCATAPSAMIDGRLVGRLDEARIDALVSE 155


>gi|108744328|gb|ABG02413.1| FdsG [Xanthobacter flavus]
          Length = 164

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
              + A +P+    QE  G+V   A+ ++A+ L+++   V  + TFY  F+  P G R  
Sbjct: 20  KHLEGATMPIFHALQETFGFVPDPAVPMIADSLNLSRAEVYGVLTFYHDFRREPPG-RHV 78

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V++C    C   G + L    + K+  +    ++DG ++ E + C G C  AP  ++   
Sbjct: 79  VKLCAAEACQSVGGKALAAYAQEKLDVEMGETSADGRVTLEPIYCLGLCACAPAALVDGQ 138

Query: 156 TYEDLTPERLEEIIDAFSTGQ 176
               L  + ++EI D  ++G+
Sbjct: 139 LMGRLDRDAIDEIADCIASGK 159


>gi|332981957|ref|YP_004463398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
           australiensis 50-1 BON]
 gi|332699635|gb|AEE96576.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Mahella
           australiensis 50-1 BON]
          Length = 150

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           V E+++R+  +  +  ++P+L+  Q    + ++S   ++ V+ +L +   RV  +ATFY+
Sbjct: 2   VEEIVNRHGIAEDK--LMPILLDIQNSNDKHYLSEDDLKQVSKLLGIPESRVYSVATFYS 59

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F L P G +  VQ+C   PC++ G   +I+  R+ +        SDG  + E   C G 
Sbjct: 60  FFSLQPRG-KYIVQICDNAPCIVNGAYNVIDDFRHILGIDMGQTTSDGLFTLEYSSCLGC 118

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C +AP   I  + Y DL  E+++ I+     
Sbjct: 119 CSHAPAARIAGELYGDLDSEKIKSILSDLRR 149


>gi|78223288|ref|YP_385035.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78194543|gb|ABB32310.1| tungsten-dependent benzoyl-CoA reductase-related protein bamG
           [Geobacter metallireducens GS-15]
          Length = 150

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            ++++I ++      S++I +L+  Q +  W+ + A++ V   L +   R+  IATFY  
Sbjct: 5   RIDQIIDKH--DGEASSLIQILLDIQSEHNWLPKEALKRVCERLQVPMSRITHIATFYKA 62

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F L P G R  V VC  T C +RG +++++  +     K    +SD   S E V C G C
Sbjct: 63  FSLVPKG-RHQVHVCMGTACHVRGAQRVLDTVQEVTGVKSGETDSDLKFSVETVNCLGCC 121

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIID 170
              P++ +    + ++ P ++  +++
Sbjct: 122 ALGPVMEVDGKHHGNIAPSQIASVLN 147


>gi|186470174|gb|ACC85637.1| HoxE [Lyngbya majuscula CCAP 1446/4]
          Length = 174

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G R 
Sbjct: 35  SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RH 93

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           +  +C  T C +RG +K++     +          DG +S     C GAC  AP+V+   
Sbjct: 94  NCVICLGTACYVRGGDKVLAALEEQTGIHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 153

Query: 155 DTYEDLTPERLEEIIDAFS 173
                 T E   E I  + 
Sbjct: 154 KMAPQQTAESSVEKIKQWQ 172


>gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
 gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
          Length = 721

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V   I+++  +    ++I LL   Q   G++ RAA+ V+A  L+++   V  + ++
Sbjct: 27  EREAVEHAIAKH--ASRPGSLIELLHSLQNALGFIPRAAVPVIAEALNLSRAEVHGVVSY 84

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y   +  P G R  +Q+C    C  RG + L    +  +  +    ++DG+++ E V C 
Sbjct: 85  YPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQATLGCQAHGTSADGSVTLEPVYCL 143

Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
           G C  +P VM+ + + +  +T +RL+ +++     + +T
Sbjct: 144 GLCAQSPAVMVDESEVHARMTADRLDALLEEIQQKRLET 182


>gi|114765414|ref|ZP_01444529.1| ATP synthase subunit E [Pelagibaca bermudensis HTCC2601]
 gi|114542257|gb|EAU45287.1| ATP synthase subunit E [Roseovarius sp. HTCC2601]
          Length = 155

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           SE+    ++  +        +  ++P+L   QE  G V  AA+ ++A  L++    V  +
Sbjct: 8   SEDLQALIDAQMP------LEGPLLPILHAIQEAYGHVPEAALPLIAETLNLTQAEVHGV 61

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+ +P G R  V++C    C   G   L +    K+        +DG ++ E V
Sbjct: 62  MSFYHDFRKAPAG-RHVVKICRAEACQSMGAGALSDAVLEKLGIGWGGTTADGRVTVEAV 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C  AP  MIG          R++  ++ 
Sbjct: 121 YCLGLCACAPAAMIGDRLIGRADAARIDAELEG 153


>gi|301058585|ref|ZP_07199590.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
 gi|300447317|gb|EFK11077.1| putative NDH-1 subunit E [delta proteobacterium NaphS2]
          Length = 161

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + S      +  ++  YP  R  +  +  L   QE + WV+   +  VA +L+MA   +
Sbjct: 1   MAISPHEQREIEALLRIYPTRRAVA--LEALKIVQEPKKWVTDEDLRDVAALLEMAPAEL 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG    +++C    C + G   L E     +   P     D   +W
Sbjct: 59  DSLATFYSQIFRRPVGE-HVIRLCDGVSCWIMGETGLEERLSRLLSIGPGETTPDRRFTW 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             V C G C  AP +MI  D Y  + PE L+ I++ ++
Sbjct: 118 LPVSCLGVCEQAPAIMIDDDLYTRIQPEDLDAILERYA 155


>gi|119489275|ref|ZP_01622082.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
 gi|119454749|gb|EAW35894.1| ATP synthase subunit E [Lyngbya sp. PCC 8106]
          Length = 176

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               Q A+I +L +AQE  G++    +  VA  L +   +V  +ATFY  F L P G R 
Sbjct: 37  SQYRQDALIEVLHKAQEAFGYLEDDVLMYVARNLKLPLSKVYGVATFYHLFSLKPAG-RH 95

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           +  +C  T C +RG +K++     +          DG +S     C GAC  AP+V+   
Sbjct: 96  NCVICMGTACYVRGGDKVLAAIEEQTGVHSGETTPDGLVSLVTARCVGACGIAPVVVYDG 155

Query: 155 DTYEDLTPERLEEIIDAFST 174
                 T E   E I  +  
Sbjct: 156 KMAPQQTAESSVEKIKEWQA 175


>gi|163760123|ref|ZP_02167206.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
 gi|162282522|gb|EDQ32810.1| ATP synthase subunit E [Hoeflea phototrophica DFL-43]
          Length = 159

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
              E A     +++R      +  ++ +L   QE  G V ++A+ V+A  L+++   V  
Sbjct: 6   LDAEIASTTQAIVAR--SKALEGPLLTILHDVQEAFGHVPQSALPVIAEGLNLSRAEVHG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + +FY  ++ +P G R  +++C    C   G ++L E     +       ++DG ++ E 
Sbjct: 64  VVSFYHDYREAPAG-RHVIKLCRAEACQSMGGDELAERLMGLLGLDWHETSADGAVTLEP 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
           V C G C  AP  M+  +    L  + + E+
Sbjct: 123 VYCLGLCACAPAAMVDGEVLGRLDADAVSEL 153


>gi|114566321|ref|YP_753475.1| NADH dehydrogenase I subunit E [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337256|gb|ABI68104.1| NADH dehydrogenase I chain E [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            ++I+ Y     +  +I      Q +  ++ + A+   A +  ++  +   +ATFY+   
Sbjct: 5   QDIIANYKD--KKGGIIEAYHALQREFNYIPQKAVAEAARVFGVSEAQAYGVATFYSYLS 62

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           +   G +  +++C + PC + G +K+++   + +  K     +DG  + E  EC G C  
Sbjct: 63  VEKRG-KYIIRMCESAPCHVAGADKVLKAMEDYLGIKVGETTADGKFTLELCECVGQCQA 121

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
            P++ +      +++ E++ EI+ A+ 
Sbjct: 122 TPVITVNSQPVFNVSSEKIPEILSAYK 148


>gi|218782890|ref|YP_002434208.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764274|gb|ACL06740.1| 2Fe-2S family protein similar to NADH:ubiquinone oxidoreductase
           (NuoE) [Desulfatibacillum alkenivorans AK-01]
          Length = 156

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            + +++  Y        ++ ++    +   +V    I V+   L ++   +  +ATFY  
Sbjct: 10  KITKIVQDYNSD--PECLLMIMQDISDIYNYVPPEVIPVLVEKLGVSESLIYSVATFYKT 67

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
             L P G +  + VC  T C +RG EK+      ++  +     +DG  + + V C GAC
Sbjct: 68  ISLEPRG-KYIINVCTGTACHVRGAEKITNALAEELGIEEGQTTADGMFTLDAVRCVGAC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            + P+ M+  DT+  L      E++D +  
Sbjct: 127 ASGPVAMVNHDTHGALNRSSALEMLDQYRK 156


>gi|39997816|ref|NP_953767.1| bidirectional hydrogenase complex protein HoxE [Geobacter
           sulfurreducens PCA]
 gi|39984708|gb|AAR36094.1| NAD-reducing hydrogenase, putative [Geobacter sulfurreducens PCA]
          Length = 191

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 8/186 (4%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+    +  +  P   +        V   + +Y       A++ +L  AQE  G +S   
Sbjct: 1   MNSTDNSPGKGTPDGLAADPR-FKVVERTLKQY--QYRADALLEVLHVAQETFGCLSDEL 57

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  L +   RV  +ATFY  F L   G  + V VC  T C ++   +++    N+ 
Sbjct: 58  MTHVARQLRVPPSRVYGVATFYHFFTLEARGEHSCV-VCTGTACYVKRSAEIVTRLENEF 116

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE----IIDAFSTGQ 176
             K     +DG L+   V C G+C  AP+V++  +T    TP+        ++   S  +
Sbjct: 117 DVKAGKTTADGKLTLSTVRCLGSCGLAPIVVLDGETVGRCTPDSAAAAVRVMLAEKSPAR 176

Query: 177 GDTIRP 182
            +T+RP
Sbjct: 177 AETVRP 182


>gi|167032815|ref|YP_001668046.1| formate dehydrogenase subunit gamma [Pseudomonas putida GB-1]
 gi|166859303|gb|ABY97710.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
           GB-1]
          Length = 160

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++R        A++P+L   Q   G++  AA+  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRILAR--DKATPGALLPILHAIQHDIGYIPDAAVPEIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  LTPERL  +++    
Sbjct: 128 CSPALELDGQVHARLTPERLRALVNGCRE 156


>gi|77993212|dbj|BAE46792.1| bidirectional hydrogenase E subunit [Nostoc sp. PCC 7422]
          Length = 170

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++  + R+     Q A+I +L +AQE  G++    +  +A  L +   RV  +A
Sbjct: 19  DKRFKILDATMKRH--QYQQDALIEVLHKAQELFGYLENDLLHYIAQSLKLPPSRVYGVA 76

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P GT   V VC  T C ++G E L+                   LS     
Sbjct: 77  TFYHLFSLAPKGTHTCV-VCTGTACYVKGAENLLTTVEKCAKVHVGETTPSSELSLLTAR 135

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C GAC  AP V+         TPE + E I+ +
Sbjct: 136 CLGACGIAPAVVFDGTVCGHQTPELVTEQIEKW 168


>gi|313673508|ref|YP_004051619.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component
           subunit hoxe [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940264|gb|ADR19456.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Calditerrivibrio nitroreducens DSM 19672]
          Length = 164

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 34  PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR 93
                  ++I +L   QE  G++   A++ V+  L++ Y R   +ATFY  F L P G  
Sbjct: 23  KNGYNPDSLIEVLHAVQEYFGYIDEDALKFVSESLNIPYSRAYSVATFYHYFTLKPQGEH 82

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             V VC  T C ++G  +L+   +N           DG +S     C GAC  AP+V++ 
Sbjct: 83  ICV-VCTGTACYIKGANQLLAHLKNHHDLSDGDTTKDGKVSLLTARCVGACSLAPVVVVD 141

Query: 154 KDTYEDLTPERLEEIIDAFS 173
                ++  E+L+++I    
Sbjct: 142 NKILGEINSEKLDDVIKGCR 161


>gi|222053344|ref|YP_002535706.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221562633|gb|ACM18605.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 150

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++++I  +      S++I +L+  Q +  W+ +  +E V+  L++   ++  I TF
Sbjct: 2   DRDRIDQIIDTHGC--KASSLIQILIAIQSENHWLPKEVLERVSERLNVPMNQIQHITTF 59

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F L P G R  V VC  T C +RG + +++   +    KP   + D   S E V C 
Sbjct: 60  YKSFSLVPKG-RHEVHVCMGTACHVRGAQGVLDTVEDVTGIKPGETDVDLKFSLETVNCI 118

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P++++  D + +L   ++E+++  +
Sbjct: 119 GCCALGPVMVVDGDYHGNLAATQVEDVLKTY 149


>gi|254483036|ref|ZP_05096271.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214036721|gb|EEB77393.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 152

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           + +++ +Y  +     ++PLL   QE  G+V   +I  +A +++++   V  + +FY   
Sbjct: 2   LAQLLCQYENT--PGGLLPLLHAVQEDLGYVPPESIPAIAEVMNLSAAEVHGVISFYHDL 59

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + SPVG R  +QVC    C   G   L    + ++         DG+++ E+V C G C 
Sbjct: 60  KTSPVG-RHTLQVCAAESCQAAGGRALEHAAQEQLGIGFGETTDDGSVTLEKVYCLGNCA 118

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            +P V I  +TY  L    L  +I     G+G +
Sbjct: 119 CSPSVRIDNETYARLDATGLTALIANIGQGEGAS 152


>gi|169351258|ref|ZP_02868196.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
 gi|169292320|gb|EDS74453.1| hypothetical protein CLOSPI_02037 [Clostridium spiroforme DSM 1552]
          Length = 163

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
              +E    ++E+++++   +    ++  L   Q+  G++   A+E ++  +++   +V 
Sbjct: 3   KLKQEYLDKIDEIVAKHKDEKGPMKLM--LHEIQDSLGYIPFEAMEKISKAINVPVSKVY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+QF   P G +  + VC  T C + G + ++++       +    + DG  S +
Sbjct: 61  GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSID 119

Query: 137 EVECQGACVNAPMVMIGKDTYE 158
              C GAC  AP+V +    + 
Sbjct: 120 ATRCVGACGLAPVVSVDGTVFG 141


>gi|220931144|ref|YP_002508052.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
 gi|219992454|gb|ACL69057.1| NADH dehydrogenase I subunit E [Halothermothrix orenii H 168]
          Length = 136

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 43  IPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTT 102
           +  L   QE  G++S   I  ++    M   R+  +  FY+ F   PVG +  V+VC + 
Sbjct: 7   LERLHNIQETYGFISEGEIRKLSQEYKMPRARIYGVIRFYSMFYTEPVG-KYIVRVCDSL 65

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTP 162
            C +   E ++EV ++ +  K      D   + E VEC G C   P++M+    Y  ++P
Sbjct: 66  SCHINDSEGIVEVVKDYLGIKNGETTEDKKFTLEVVECLGHCGEGPVMMVNDRIYTRVSP 125

Query: 163 ERLEEII 169
               EI+
Sbjct: 126 NMALEIL 132


>gi|320354166|ref|YP_004195505.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Desulfobulbus propionicus DSM 2032]
 gi|320122668|gb|ADW18214.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxE [Desulfobulbus propionicus DSM 2032]
          Length = 166

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++  I R+       A+I  L  AQE  G++ R  +  +A  L +   RV  +ATF
Sbjct: 14  QRQAIDRTIHRH--DFRPDALIETLHTAQETLGYLDRDTLAYIAEKLKIPPARVFGVATF 71

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+L P G    + VC  T C ++G ++++     + H +P     D  LS  EV C 
Sbjct: 72  YNHFRLKPKGN-HTLAVCTGTACHVKGNDQILAWLGEQYHLRPGETTPDNHLSLVEVRCV 130

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           GAC  AP+++   +       +    +I  +
Sbjct: 131 GACALAPVIVSDGELIGKKNFDEAIRLIKEW 161


>gi|254445571|ref|ZP_05059047.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198259879|gb|EDY84187.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 160

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
                E+   +   I +YP    QSAV+PLL   Q+ +G ++  A E VA  L +A I V
Sbjct: 1   MDLKPETLAEIEAAIPKYPE--KQSAVMPLLHAIQKDQGTLTNEAAEWVAEKLGIAPINV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           L + +FY  F+   +G R  ++VC T  C + G  K+ +    +   +    + DG ++ 
Sbjct: 59  LSVISFYPFFRQHQIGKRH-IRVCRTLSCAMAGGAKVCDRMLKEFETELNGVSPDGEVTV 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           E  EC  +C +AP++++ ++ +E+L   + +EI D    
Sbjct: 118 EFAECLASCGSAPVMLVDEELHENLDEAKAKEICDKIKA 156


>gi|188995983|ref|YP_001930234.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931050|gb|ACD65680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 156

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            ++  IPLL   Q   G++    +E++A  L+++   +  + TFY+ F+    G +  ++
Sbjct: 14  KKNGFIPLLHSIQNHYGYIPIEFVEILAKRLNLSKAEIWGVITFYSDFKTKKPG-KNIIK 72

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C+  G  ++ +  ++K++        DG  + EEV C G C   P VMI    Y
Sbjct: 73  VCRSESCIANGGLEIQKYLKSKLNINFKETTEDGKFTLEEVFCFGNCGCGPSVMINNKLY 132

Query: 158 EDLTPERLEEIIDAFSTGQGD 178
             ++ ++LEE++   S  + +
Sbjct: 133 GRVSLKKLEELLKNLSGDKNE 153


>gi|121609342|ref|YP_997149.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
           eiseniae EF01-2]
 gi|121553982|gb|ABM58131.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 156

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +E     +  ++           ++P+L   Q+  G +   A+ ++A  L+++   V  
Sbjct: 2   LTESQQQIIQTIVD--GKKHLPGGLLPMLHDIQDALGHIPAPALGLIAQELNLSRAEVHG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFY  F+  P G +  VQ+C    C   G +KL E   ++++       +DG ++ E 
Sbjct: 60  VVTFYHFFRHEPAG-KQVVQICRAEACQSMGADKLWEHACSRLN-TQGGTTADGAVTLEP 117

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           V C G C ++P +++ +  +  +   + + ++ A
Sbjct: 118 VYCLGLCSSSPAMVVDEQLHARVDTVKFDRLVAA 151


>gi|316932166|ref|YP_004107148.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
 gi|315599880|gb|ADU42415.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
          Length = 156

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             +        +E+I+    +    A + +L   QE  G+V + A  ++A  L+++   V
Sbjct: 1   MQYEPWETARASEIIA--GLTHKDGATLLMLQALQEAFGYVPQDAEPMIAQALNLSRAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY  F+  P G R  +++C    C   G + L+     ++        +DG ++ 
Sbjct: 59  HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           E   C G C  AP  MI +     L   +L+ ++
Sbjct: 118 EPAYCLGLCATAPSAMINERVVGRLDAGKLDALL 151


>gi|148254530|ref|YP_001239115.1| formate dehydrogenase subunit gamma [Bradyrhizobium sp. BTAi1]
 gi|146406703|gb|ABQ35209.1| formate dehydrogenase gamma subunit [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+ +  S+ + A +P+L   QE  G+V   AI ++A  L+++   V  + TFY  F+ 
Sbjct: 15  EIIAEH--SKMEGATLPILHALQEAFGYVPEEAIPMIATALNLSRAEVYGVFTFYHDFRA 72

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G R  +++C    C   G + L      K+     +  +D  ++ E + C G C  A
Sbjct: 73  KKAG-RHVLKLCRAEACQAAGGDALAARAEAKLGIALGNTTADERVTLEPIYCLGLCATA 131

Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
           P  M+       L   R++ ++  
Sbjct: 132 PSAMLDGRLVGRLDEARIDALVSE 155


>gi|50083952|ref|YP_045462.1| NADH dehydrogenase subunit E [Acinetobacter sp. ADP1]
 gi|49529928|emb|CAG67640.1| NADH dehydrogenase I chain E [Acinetobacter sp. ADP1]
          Length = 170

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PVG 
Sbjct: 33  YPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQMLSISVADLEGVATFYNRIYRQPVG- 89

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + +C +  C L G E L E  + ++  +     +DG  +   + C G C   P +MI
Sbjct: 90  RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTADGRFTLLPICCLGNCDKGPTLMI 149

Query: 153 GKDTYEDLTPERLEEIIDAF 172
            +DT+  +    ++++++ +
Sbjct: 150 DEDTHGLVDVSSVKQLLEKY 169


>gi|46446197|ref|YP_007562.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399838|emb|CAF23287.1| putative NADH-ubiquinone oxidoreductase chain E [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 159

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           YP  R  SA+IP L  AQ ++G++       +A + D+    V  I TFY  F   PVG 
Sbjct: 5   YPNKR--SALIPALHLAQAEKGYLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPVG- 61

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + VC    CMLRG +  +     K+H  P     DG  +    EC  AC  AP++++
Sbjct: 62  KHVIHVCKNISCMLRGADGFLARLCQKMHISPGETTQDGEFTVIASECLAACDKAPVMIV 121

Query: 153 GKDTYEDLTPERLEEIIDA 171
                  +   ++++ I  
Sbjct: 122 DDKVIGPVEITQIDDYIQK 140


>gi|301062487|ref|ZP_07203133.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300443417|gb|EFK07536.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 155

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +  ++  Y   R  S +IP+L  AQ   GW+ R  ++++A+ L +    V  +A+FY
Sbjct: 7   EAALKNILVFYEGKR--SELIPILQEAQGINGWLPREVMQLIADFLHINEGEVHSVASFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+L P+G +  V VC  T C +RG  +++      +  K    + D   + E V C G
Sbjct: 65  NQFRLMPLGRK-MVTVCRGTACHIRGAPQILVDIGQSLRLKEGETSPDLEYTLESVACIG 123

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  AP+V +    + ++T ER   +    S 
Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKLSE 155


>gi|78221379|ref|YP_383126.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
 gi|78192634|gb|ABB30401.1| NADH dehydrogenase subunit E [Geobacter metallireducens GS-15]
          Length = 173

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L +  ++V E+ATFY      PVG R  V V
Sbjct: 21  REAAVDVIKELQRHYGWLTDEAVAEAAGLLGLTPLQVEELATFYEMIYRRPVGKR-VVHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E L+     K+  +P    +DG  +     C G C  AP +MIG   Y 
Sbjct: 80  CDSISCWAMGGESLMAHLAAKLGVEPGGTTADGMFTLLPCCCLGNCGEAPTLMIGDTLYG 139

Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGP 184
            +TPER EEI+         T+  GP
Sbjct: 140 RVTPERGEEILSNARET-AATVPEGP 164


>gi|73748097|ref|YP_307336.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147668875|ref|YP_001213693.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|289432123|ref|YP_003461996.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|73659813|emb|CAI82420.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146269823|gb|ABQ16815.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|288945843|gb|ADC73540.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 155

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + TFY
Sbjct: 6   KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +    +  G +  +++C + PC L G E +++   + +  +P     D   + E V C G
Sbjct: 64  SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDRRFTLELVPCLG 122

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  +P ++I    Y  LT + + E++D   T
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|104780975|ref|YP_607473.1| formate dehydrogenase subunit gamma [Pseudomonas entomophila L48]
 gi|95109962|emb|CAK14667.1| putative formate dehydrogenase, gamma subunit [Pseudomonas
           entomophila L48]
          Length = 161

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  V++R        A++P+L   Q   G +  AA+  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRVLAR--EKHTPGALLPVLHAIQAGIGHIPDAAVGEIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       + DG LS   V C GAC 
Sbjct: 69  RTTPP-ARHTLRLCRAESCQSRGAEALAAQLREQLGLDDHGTSEDGALSLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            +P + +    +  +TPERL  ++     G
Sbjct: 128 CSPALELDGQLHARVTPERLRALVAGCREG 157


>gi|57235005|ref|YP_180895.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225453|gb|AAW40510.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 155

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              V+ VI++   SR   +++P L   QE+ G++   A+  +   L +  I +  + TFY
Sbjct: 6   KEKVDGVITQSGSSRL--SLLPCLEAVQEECGYIPHEAVNYLRECLSIPSIDIYGMITFY 63

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           +    +  G +  +++C + PC L G E +++   + +  +P     D   + E V C G
Sbjct: 64  SLLSTNQKG-KYVIRLCNSLPCYLNGTENILDTLVDNLGIEPGQTTLDQRFTLELVPCLG 122

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  +P ++I    Y  LT + + E++D   T
Sbjct: 123 LCDQSPAMVINGVVYGKLTAQLVTEVLDELRT 154


>gi|70733836|ref|YP_257476.1| formate dehydrogenase subunit gamma [Pseudomonas fluorescens Pf-5]
 gi|68348135|gb|AAY95741.1| formate dehydrogenase, gamma subunit [Pseudomonas fluorescens Pf-5]
          Length = 158

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++ R+  S    A++P+L + QE+ G++   AI  +A+ L+++   V  + +FY  F
Sbjct: 11  IHRLLERHKDS--PGALLPILHQIQEELGYIPDPAIPEIAHSLNLSQAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E+L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RSAPP-ARHILRLCRAESCQSRGAEQLAAQLRERLQLDDHGSSADGNISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  L+ ERL+ ++D+   
Sbjct: 128 CSPALELDGQLHARLSAERLDALLDSCRE 156


>gi|282895631|ref|ZP_06303756.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Raphidiopsis
           brookii D9]
 gi|281199325|gb|EFA74190.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [Raphidiopsis
           brookii D9]
          Length = 170

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++  I R      Q A+I +L RA E  G++    +  +A  L +   RV  +A
Sbjct: 16  DKRLRMLDTAIKR--CQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVA 73

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P G    V VC  T C ++G + ++      I  K      DG +S     
Sbjct: 74  TFYHLFSLAPKGKHNCV-VCTGTACYVKGSQAILTALETFIQIKAGDTTPDGEVSVMTAR 132

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP V+   +   + T + + + +  +  G
Sbjct: 133 CLGACGIAPAVVFDGEVLGNQTAQSVCKKVGEWQHG 168


>gi|192289231|ref|YP_001989836.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           TIE-1]
 gi|192282980|gb|ACE99360.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 156

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             +        +++I+    +  + A + +L   Q+  G+V   A  ++A  L+++   V
Sbjct: 1   MQYEPWEPARASDIIA--GLTHKEGATLLMLQALQQAFGYVPPDAEPMIAQALNLSRAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY  F+  P G R  +++C    C   G + L+     ++        +DG ++ 
Sbjct: 59  HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALVAHVETRLGVTFGATTADGAVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           E   C G C  AP  MI +     L   +L+ ++  
Sbjct: 118 EPAYCLGLCATAPSAMINERVVGRLDAGKLDALLAE 153


>gi|282899669|ref|ZP_06307633.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195548|gb|EFA70481.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Cylindrospermopsis
           raciborskii CS-505]
          Length = 170

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+    ++  I R      Q A+I +L RA E  G++    +  +A  L +   RV  +A
Sbjct: 16  EKRLRMLDTAIKR--CQYQQDALIEILHRATELFGYLELDLLLYIARELKLPPSRVYGVA 73

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P G    V VC  T C ++G ++++      I  K      DG +S     
Sbjct: 74  TFYHLFSLAPKGKHNCV-VCTGTACYVKGAQEILTTLETFIQIKAGDTTPDGEVSLMTAR 132

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C GAC  AP V+   +   + T + + + +  +  G
Sbjct: 133 CLGACGIAPAVVFDSEVLGNQTAQSVCKKVGEWQHG 168


>gi|300023971|ref|YP_003756582.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525792|gb|ADJ24261.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 176

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
             + E  P++        I    + +R+        ++ +    Q   G+V    + ++A
Sbjct: 12  DTKPEITPTTPV-----QIAAAAICARH--GNKPDELLEIFHEMQHDLGYVPEETLPIIA 64

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
             L+ +   +  + TFY +F   PVG +  V++C    C   G ++L +   +K++    
Sbjct: 65  KALNRSRAEIYGVLTFYHEFHRHPVG-KHVVKICRAEACQSMGTDELCQHAESKLNVPLG 123

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
              +DG ++ E+V C G C  +P VM+G+  Y  + P+R +EII        +
Sbjct: 124 GTTADGAVTIEQVFCLGNCALSPAVMVGEKLYGRVDPKRFDEIIAGLEKEAAE 176


>gi|302391062|ref|YP_003826882.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
 gi|302203139|gb|ADL11817.1| NADH dehydrogenase subunit E [Acetohalobium arabaticum DSM 5501]
          Length = 163

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 20  EESAIW----VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           EE+       + +++  Y  ++ +  +IP+L   Q++  ++    ++ VA  + ++  +V
Sbjct: 9   EENLNKYLEPLFKILDGY--AKEEKNLIPILQDVQDEYDYLPEPVLKEVATEIGLSASQV 66

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+QF L P G    ++VC  T C +RG E ++     ++  +      +   + 
Sbjct: 67  YGVATFYSQFHLEPRGD-NIIRVCMGTACHVRGAENILNKIEEELEIEEGETTENLEFTL 125

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           E V C GAC  AP++MI  DT+  LTP+R+ E++  + 
Sbjct: 126 ESVACIGACGLAPVIMINDDTHGRLTPDRVPEVLAQYQ 163


>gi|119475814|ref|ZP_01616166.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
 gi|119450441|gb|EAW31675.1| ATP synthase subunit E [marine gamma proteobacterium HTCC2143]
          Length = 200

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++ +  ++     + A++P+L   Q + G +    +  +A++ +++   V  + +FY 
Sbjct: 47  ATISRIARKHLD--QEGALLPVLHSIQTEFGHIPPDCVGQIADLFNVSAAEVHGVLSFYP 104

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+ +P G R  +Q+C    C   G   L    +  +       ++DG  + E V C G 
Sbjct: 105 FFRSTPPG-RHTIQICRAEACQSMGSRLLERHAKLTLGIDFHQTSADGEFTLEPVYCLGN 163

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  +P + +G   +  +   R + +ID   T
Sbjct: 164 CACSPSIRVGTQIFSHVDSARFDALIDDLQT 194


>gi|293609136|ref|ZP_06691439.1| predicted protein [Acinetobacter sp. SH024]
 gi|292829709|gb|EFF88071.1| predicted protein [Acinetobacter sp. SH024]
 gi|325121084|gb|ADY80607.1| NADH dehydrogenase I chain E [Acinetobacter calcoaceticus PHEA-2]
          Length = 169

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L M+   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLSMSVADLEGVATFYNRIYRHPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQYGQTTPDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|152996298|ref|YP_001341133.1| formate dehydrogenase subunit gamma [Marinomonas sp. MWYL1]
 gi|150837222|gb|ABR71198.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Marinomonas sp.
           MWYL1]
          Length = 165

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
             +I  +       A++PLL   Q++  ++   A+ ++A  L ++   V  + +FY  F+
Sbjct: 15  QAIIEEFKA--KPGALLPLLHAIQDRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFR 72

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
               G R  V+VC    C   G   L    ++ +  +     +D  ++ E V C G C  
Sbjct: 73  TKQPG-RHVVEVCRAEACQAVGARHLEAYAKSILDVQYHQTTADNNITLEPVYCLGNCSC 131

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
            P V +G + Y ++  +R +E+I++  T + + 
Sbjct: 132 GPSVRVGDEIYAEVDTQRFDELIESLKTERLEV 164


>gi|91203806|emb|CAJ71459.1| similar to NADH:ubiquinone oxidoreductase 24 kDa subunit,
           mitochondrial precursor [Candidatus Kuenenia
           stuttgartiensis]
          Length = 152

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 30  ISRYPP--SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           + +Y       + A IP+L   QE+ G++    ++ V    ++    +  +ATFY QF+L
Sbjct: 6   VKKYLEICGNTKEASIPILQSIQEEYGYLPLDVLDQVCEESEITKSHLYGVATFYAQFKL 65

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           +P G R  ++VC  T C ++G +  I   ++++         DG  S E V C G C  A
Sbjct: 66  TPKG-RNAIKVCKGTACHVKGADITIVAMKDQLGIDIDQTTEDGAFSMETVACLGCCSLA 124

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAF 172
           P++MI +D +   +  ++   +  +
Sbjct: 125 PVIMINEDVFGGFSSAKVRGTLKKY 149


>gi|148262415|ref|YP_001229121.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
 gi|146395915|gb|ABQ24548.1| NADH dehydrogenase subunit E [Geobacter uraniireducens Rf4]
          Length = 157

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+E  A +L ++ ++V E+ATFY      PVG R  +  
Sbjct: 21  REAAVDVMKELQRHYGWLTDEAVEEAAALLGLSTLQVEELATFYEMIYRRPVGRR-VIHA 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E ++      +  +P     DG  +     C G C + P +MIG   Y 
Sbjct: 80  CDSISCWAVGGEHMMAQLARHLGIEPGETTKDGMFTLLPCCCLGNCGDGPAMMIGDTLYG 139

Query: 159 DLTPERLEEIIDA 171
            LT E+LEEI+  
Sbjct: 140 RLTAEKLEEILAQ 152


>gi|170720891|ref|YP_001748579.1| formate dehydrogenase subunit gamma [Pseudomonas putida W619]
 gi|169758894|gb|ACA72210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pseudomonas putida
           W619]
          Length = 160

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++SR+  +    A++P+L   QE  G++  AA+  +A+ L+++   V  + +FY  F
Sbjct: 11  IQSILSRHQDT--PGALLPILHAVQESIGFIPDAAVADIAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGSEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P + +    +  LTPERL  +++ 
Sbjct: 128 CSPALELDGQVHARLTPERLRSLVNG 153


>gi|77917823|ref|YP_355638.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
 gi|77543906|gb|ABA87468.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 162

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            SE+    +   +   P  R    V+ +L   Q+  GWVS   +E+ A IL ++ ++V E
Sbjct: 5   LSEKQIAQLKRRVKETPHPRE--MVLDVLHAIQDANGWVSDEGVELAAIILGLSPLQVEE 62

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           IATFY +    PVG +  + VC +  C  RG E L+   +  +   P    +DG  +   
Sbjct: 63  IATFYDKIYRCPVGRK-VIHVCDSICCWSRGGEALMLRLQQLLGIAPGETTADGMFTLLP 121

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             C GAC  AP V IGK  Y  +  E+LE I+D+  T
Sbjct: 122 TCCLGACGEAPAVRIGKTLYGQVALEQLESILDSERT 158


>gi|332715499|ref|YP_004442965.1| NAD-dependent formate dehydrogenase subunit gamma [Agrobacterium
           sp. H13-3]
 gi|325062184|gb|ADY65874.1| NAD-dependent formate dehydrogenase gamma subunit [Agrobacterium
           sp. H13-3]
          Length = 178

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            + A  V  +I        +  ++P+L R QE+ G+V  +  +V+A  L+++   V  + 
Sbjct: 27  ADEATRVQAIID--DCLHMEGPMLPILHRVQEEFGYVPDSVKQVIALALNVSRAEVHGVV 84

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   GCE L +  + K+         DG+++ E V 
Sbjct: 85  SFYPDFRDHP-GGRHVLKLCRAEACQSMGCESLADTIKGKLGLDWHQTAKDGSVTLEPVF 143

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  AP +M+  + +  +    L +I+     
Sbjct: 144 CLGLCAQAPALMLDGEVHARVDEHCLGDILAEVRR 178


>gi|308272724|emb|CBX29328.1| hypothetical protein N47_J03090 [uncultured Desulfobacterium sp.]
          Length = 168

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EES   + E +  Y   R +  +IP+L  AQ   G++   AI+++A+ + +    V  +A
Sbjct: 13  EESGGALKETLEFYSGKRNE--LIPILQEAQGIYGYLPEDAIKIIADFIKITIGEVYSVA 70

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY QF+L P+G R  V +C  T C +RG  ++++     ++ K    + D   + E V 
Sbjct: 71  SFYNQFRLIPLG-RNTVTICRGTACHIRGAPQIVDEIGKVLNLKEGETSEDMEYTLETVA 129

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           C G C  AP V I    +  L P + + + +
Sbjct: 130 CIGCCALAPCVKINHKIHGCLEPGQAKGLFN 160


>gi|237734767|ref|ZP_04565248.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|229382095|gb|EEO32186.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 160

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    ++E+++++   +    ++  L   Q + G++   A+E ++  + +   +V  + 
Sbjct: 3   QEYLDKIDEIVAKHKDEKGPMKLM--LHEIQNELGYIPFEAMEKISETIGVPVSKVYGVV 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF   P G +  + VC  T C + G + ++++       +    + DG  S +   
Sbjct: 61  TFYSQFTTEPKG-KHVIAVCLGTACYVNGSQTILDLLCEMTGCEVNSTSPDGLFSIDATR 119

Query: 140 CQGACVNAPMVMIGKDTYE 158
           C GAC  AP+V +    + 
Sbjct: 120 CVGACGLAPVVSVDGIVFG 138


>gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 638

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAIEVVANILDMAYIRVLEIATFYT 83
           + EVI+     + +  ++ +L   +   G   +S   +  VA  +++    V     FYT
Sbjct: 37  IQEVINN--RGKAREHLMAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVAGFVGFYT 94

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P   +  ++VC + PC + G   + +     +   P    +DG    E  EC G 
Sbjct: 95  MFSTRPR-AKFLIRVCKSGPCHVMGARTIFDYVEKHLGISPGQTTADGLFHLEACECLGI 153

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP-GPQI-DRISSAPAGGLT-SL 200
           C  AP +MI  D + +LT ER+  I+D + + +       GP++  R+      G T  L
Sbjct: 154 CSVAPAMMINYDLHGNLTEERIATILDGYRSREPFFGEACGPEVEGRVCMLDEPGQTQRL 213

Query: 201 LDN 203
            + 
Sbjct: 214 TEK 216


>gi|302344256|ref|YP_003808785.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640869|gb|ADK86191.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 170

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               ++++I +      ++ +I +L    ++  ++   A+  ++  L ++   + EI TF
Sbjct: 20  DYQELDDLIFQRSGGDKEN-LIMILQAISKRYNYLPLPALRYLSAKLGVSMSGIYEIVTF 78

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+ F L P G R  + VC  T C +RG E++ +   + +  K     +D   + E V C 
Sbjct: 79  YSMFCLEPRG-RNIISVCLGTACHVRGAERIKQSVEDYLGIKAGETTADFKFTLETVRCI 137

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C   P+V+I +  +  +T +++   +   +
Sbjct: 138 GCCSLGPVVVIDEKYHGGMTSDKMLNTLKEMA 169


>gi|219851496|ref|YP_002465928.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
           palustris E1-9c]
 gi|219545755|gb|ACL16205.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methanosphaerula
           palustris E1-9c]
          Length = 162

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 22  SAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
               ++++I+RY  P  R    V+ +L   Q QEG++ R  +E ++  LD+    +  + 
Sbjct: 2   EEQVLDQIIARYASPTGR----VLGILSEVQHQEGYIPRDVLETLSQKLDLPLSDLYSLV 57

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----------RNS 129
           TFY  F L PVG    + VC  T C ++G   L+E  ++ +H +                
Sbjct: 58  TFYALFSLKPVGE-HVITVCMGTACHVKGAVSLLETLQDLLHLE-GEAADEDGKFSLTTE 115

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           D   + E   C GAC  AP++ +  + Y  +TPE L  I++ +
Sbjct: 116 DNRFTLEIARCFGACSIAPVLRVDGNLYGYVTPESLPGILEGY 158


>gi|253998888|ref|YP_003050951.1| formate dehydrogenase subunit gamma [Methylovorus sp. SIP3-4]
 gi|253985567|gb|ACT50424.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
           SIP3-4]
          Length = 156

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E A  ++  I+ +          PLL   Q+  G+V   +   ++  L+++   +  + 
Sbjct: 3   PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+  P G R  +Q+C    C   G  +L    +  +        SDG+++ E V 
Sbjct: 61  TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C  +P + + ++ Y  ++P+RL+ II  
Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAE 151


>gi|148259852|ref|YP_001233979.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|326403220|ref|YP_004283301.1| putative formate dehydrogenase gamma subunit [Acidiphilium
           multivorum AIU301]
 gi|146401533|gb|ABQ30060.1| formate dehydrogenase gamma subunit [Acidiphilium cryptum JF-5]
 gi|325050081|dbj|BAJ80419.1| putative formate dehydrogenase gamma subunit [Acidiphilium
           multivorum AIU301]
          Length = 157

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
             P    +++E       VI  Y     +  ++P+L   QE  G++ R A  ++A++L++
Sbjct: 1   MDPKPAEWNDE---AARAVIRDYLGE--EGPLLPILHALQENFGFIPREAEPLIADMLNI 55

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               V  + +FY  F+ +P G R  +++C    C   G E       + +  +      D
Sbjct: 56  TRAEVHGVISFYHDFRRAPAG-RHVLKLCRAEACQSMGSEANARRLLDALGLEWGGTTPD 114

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G ++ E V C G C  AP  +   +         LE ++  
Sbjct: 115 GRITVEAVYCLGLCATAPSALFDDEPVGRADAATLEALVAE 155


>gi|297569385|ref|YP_003690729.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925300|gb|ADH86110.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 206

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 7/188 (3%)

Query: 1   MSVRRLAEEEFQ--PSSFSFSEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
           M    LAE+     P   + +     W  V   + R         +I  L   Q   G++
Sbjct: 22  MGKHALAEKNMPSAPRPVTNTAADKRWRPVEAAMRR--NGYRAGGLIEALHAVQRAYGYI 79

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
             AA+  +   L +   ++  + TFY  F L P G R    VC  T C ++G ++L++  
Sbjct: 80  DEAAMRAIGAALQLPLSKIYGVVTFYHFFHLKPKG-RHTCVVCLGTACYIKGADRLLQTI 138

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             +    P    +DG LS     C GAC  AP V+I            +   +   ++  
Sbjct: 139 SREQQVSPGETTADGRLSLLTARCVGACGQAPAVVIDDQVVGQAEESAIHRQLAGLNSAG 198

Query: 177 GDTIRPGP 184
             +    P
Sbjct: 199 PGSDEEQP 206


>gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
 gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
          Length = 626

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           SA  ++ + +++   + +  ++ +L   Q++   ++ A ++ +A    +  I V  +A+F
Sbjct: 22  SAEEIDAICAQFGNDKHR--MLDILREVQDRYRCIAPATMDHIAAATGLTRIEVEGVASF 79

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y+   L+P G R  +++C        G  ++     +++  K    ++DG  S E   C 
Sbjct: 80  YSFLSLTPKG-RVTIRLCDDIVDRFSGLSEVACAFEDELGLKVGETSNDGAFSLEYTPCI 138

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-PAGGLTSL 200
           G C  AP  M+       LTPE       A   G+          DR  +  P+     +
Sbjct: 139 GMCDQAPAAMVNDIVLTKLTPETARSAAQALKAGRSPEQL---ISDRFEALTPSERALHM 195

Query: 201 LDNNSKKRGK 210
           +DNN +  G+
Sbjct: 196 VDNNIRHAGE 205


>gi|94265733|ref|ZP_01289470.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93453746|gb|EAT04122.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 200

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 4/160 (2%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
                  +I  L   Q+  G++   A+  +A  L +   +V  + TFY  F L P G R 
Sbjct: 30  NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 88

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
              VC  T C ++G  +++       H K     +DG LS     C GAC  AP V++  
Sbjct: 89  SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 148

Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
                      E I+       G     G Q     SAP 
Sbjct: 149 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAPI 185


>gi|313200987|ref|YP_004039645.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Methylovorus sp.
           MP688]
 gi|312440303|gb|ADQ84409.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylovorus sp.
           MP688]
          Length = 156

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E A  ++  I+ +          PLL   Q+  G+V   +   ++  L+++   +  + 
Sbjct: 3   PEQAARIDAHITAHKALPGGLL--PLLHAIQDDVGYVPEESYGSISKALNLSVAEIHGVV 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+  P G R  +Q+C    C   G  +L    +  +        SDG+++ E V 
Sbjct: 61  TFYHHFRTHPPG-RHVIQICRAESCQSMGSTELEAHAKASLGIDYHQTTSDGSITLEPVY 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C  +P + + ++ Y  ++P+RL+ II  
Sbjct: 120 CLGNCACSPAITVDEEVYGRVSPKRLDAIIAE 151


>gi|219849355|ref|YP_002463788.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aggregans DSM 9485]
 gi|219543614|gb|ACL25352.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aggregans DSM 9485]
          Length = 173

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +   + R+      +A+I +L +AQE  G++S   +  +A  L +   RV  +ATFY
Sbjct: 22  RKILEATMKRF--QYQGNALIEVLHKAQELYGFLSPELLSEIAQRLHLPPSRVYGVATFY 79

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L+P G R    VC  T C +RG   L+         K  H + DG LS     C G
Sbjct: 80  HFFSLAPQG-RHSCTVCLGTACYVRGAAILLRELETLSGIKAGHTSPDGQLSLLTARCLG 138

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP V++  +         L   I + 
Sbjct: 139 ACGIAPAVVLDGEVIGHADRSDLTTRIRSL 168


>gi|254282625|ref|ZP_04957593.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
           NOR51-B]
 gi|219678828|gb|EED35177.1| formate dehydrogenase, gamma subunit [gamma proteobacterium
           NOR51-B]
          Length = 154

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           +I +Y    C+ A++PLL   Q Q G +  AAI+ +A  L+++   V  + +FY  F+ S
Sbjct: 8   IIDQYRD--CEGALLPLLHAVQAQWGHIPDAAIDPIARELNLSAAEVHGVISFYHDFKTS 65

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    VQVC    C  RG   L      ++          G ++ E V C G C   P
Sbjct: 66  PQGE-HLVQVCCAEACQARGSRSLESYATQRLGIDYGETTVSGRVTLERVYCLGNCACGP 124

Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171
            + I  D Y  +     + ++  
Sbjct: 125 SLRIDDDVYARVDNPTFDALLAE 147


>gi|182413364|ref|YP_001818430.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177840578|gb|ACB74830.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 228

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 10/168 (5%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
                    V + ++R+     +  +I +L   Q Q G++ R     ++  L +   R+ 
Sbjct: 67  KLDSTIRRDVQQHVARWRDE--EGNLIMILHAIQNQHGYIPREVAMELSRELGVKLARIY 124

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           E+ TFY  F+L P G    V VC  T C L+G   ++  CRN++       ++D     +
Sbjct: 125 EVTTFYHYFKLQPPGAHNVV-VCNGTACYLKGAGDILGECRNQLGIAEGQTSADRQFHLD 183

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
            V C G C  +P +++   T+  +    +  II+A         +P P
Sbjct: 184 TVRCIGCCGMSPAIVVDGKTHGRVKTSDVAGIINAVR-------KPAP 224


>gi|94272887|ref|ZP_01292198.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [delta
           proteobacterium MLMS-1]
 gi|93449983|gb|EAT01387.1| NADH dehydrogenase (ubiquinone),  24 kDa subunit [delta
           proteobacterium MLMS-1]
          Length = 171

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 4/160 (2%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
                  +I  L   Q+  G++   A+  +A  L +   +V  + TFY  F L P G R 
Sbjct: 1   NGYQAGGLIEALHAVQQSYGYIDEEAMGRLATALTLPLSKVYGVVTFYHFFHLKPKG-RH 59

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
              VC  T C ++G  +++       H K     +DG LS     C GAC  AP V++  
Sbjct: 60  SCVVCLGTACYIKGAAEILGDIAAAYHIKAGETTADGALSLLTARCVGACGQAPAVVLDD 119

Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
                      E I+       G     G Q     SAP 
Sbjct: 120 RVVGQ---SSGEAILAELRGLAGIDPDHGAQRGDNHSAPI 156


>gi|260551030|ref|ZP_05825235.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
           RUH2624]
 gi|260405978|gb|EEW99465.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter sp.
           RUH2624]
          Length = 169

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSVKQLLEKY 168


>gi|215484516|ref|YP_002326751.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
           baumannii AB307-0294]
 gi|213985764|gb|ACJ56063.1| NAD-dependent formate dehydrogenase gamma subunit [Acinetobacter
           baumannii AB307-0294]
          Length = 168

 Score =  171 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 29  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 86

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 87  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 145

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 146 MIDEDTHGLVEVTSIKQLLEKY 167


>gi|195400739|ref|XP_002058973.1| GJ15322 [Drosophila virilis]
 gi|194141625|gb|EDW58042.1| GJ15322 [Drosophila virilis]
          Length = 129

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G + H+QVC TTPC LRG +++++ C+ ++         D   +  EVEC GA
Sbjct: 1   MFMRKPTG-KYHIQVCTTTPCWLRGSDEILDTCKKQLGIGVGETTKDNKFTISEVECLGA 59

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
           CVNAPMV I  D YEDLT   ++ I+      +     PGP+  R +S P G  TSL + 
Sbjct: 60  CVNAPMVSINDDYYEDLTSADMQSILGDLKADK--ISPPGPRNGRFASEPKGNPTSLSEE 117

Query: 204 NSK 206
              
Sbjct: 118 PKG 120


>gi|169797055|ref|YP_001714848.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AYE]
 gi|184157032|ref|YP_001845371.1| NADH dehydrogenase subunit E [Acinetobacter baumannii ACICU]
 gi|213156539|ref|YP_002318200.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
 gi|239501291|ref|ZP_04660601.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB900]
 gi|260555653|ref|ZP_05827873.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347791|ref|ZP_07228532.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB056]
 gi|301510626|ref|ZP_07235863.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB058]
 gi|301595911|ref|ZP_07240919.1| NADH dehydrogenase subunit E [Acinetobacter baumannii AB059]
 gi|332852144|ref|ZP_08433971.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
 gi|332867543|ref|ZP_08437696.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
 gi|332872607|ref|ZP_08440575.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
 gi|169149982|emb|CAM87876.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AYE]
 gi|183208626|gb|ACC56024.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Acinetobacter
           baumannii ACICU]
 gi|193076537|gb|ABO11195.2| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
 gi|213055699|gb|ACJ40601.1| NADH dehydrogenase I chain E [Acinetobacter baumannii AB0057]
 gi|260410564|gb|EEX03862.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506931|gb|ADX02385.1| nuoE [Acinetobacter baumannii 1656-2]
 gi|323516798|gb|ADX91179.1| NADH dehydrogenase subunit E [Acinetobacter baumannii TCDC-AB0715]
 gi|332729516|gb|EGJ60855.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013150]
 gi|332733960|gb|EGJ65105.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6013113]
 gi|332739136|gb|EGJ69995.1| NADH dehydrogenase subunit E [Acinetobacter baumannii 6014059]
          Length = 169

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L E  + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEAFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|71280406|ref|YP_268784.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
 gi|71146146|gb|AAZ26619.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
           34H]
          Length = 168

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 24  IWVNEVISRYPPSR--CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
             + ++IS     +     A++P+L   Q    ++ + AI +VA  L      +  + TF
Sbjct: 8   KSIEQIISEIVEKKVGLPGALLPILHDIQHHFDYIPKKAIAIVAQGLQQTEAEIYGVITF 67

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  FQL+  G R  +++C    C   G + L +  ++++         D   + E V C 
Sbjct: 68  YAHFQLNKPG-RHIIEICRGEACQAMGSKALEKAIKSQLAVDFGQTTVDKNFTLEPVYCL 126

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C  +P + +  + Y  +  E+  ++ +  S
Sbjct: 127 GNCACSPSIKVADNVYGRMNSEKFAKLSEQLS 158


>gi|37787351|gb|AAP50519.1| Hox1E [Thiocapsa roseopersicina]
          Length = 164

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA+ LD+   +V  +ATFY  F L P G  A V VC 
Sbjct: 33  ALIETLHSVQDAFGFLDEGSLRFVASSLDLPLSKVYGVATFYHLFALKPKGRHACV-VCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   L+E  + +    P     D  LS     C GAC  AP ++I  D    L
Sbjct: 92  GTACYIKGAGGLVERLQERYDINPGETTEDDRLSLLTARCVGACGLAPAIVIDGDVLGKL 151

Query: 161 TPERLEEIIDAF 172
             E L   ++  
Sbjct: 152 DSESLIAKLEEL 163


>gi|319795812|ref|YP_004157452.1| NADH dehydrogenase (ubiquinone) 24 kda subunit [Variovorax
           paradoxus EPS]
 gi|315598275|gb|ADU39341.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus EPS]
          Length = 166

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +    V +V+          A++P+L   Q+  G++    +  +A  ++++   V  + T
Sbjct: 14  DELAAVRQVLQERAEE--PGALLPILHDVQDALGYIPPHTVTTIAEGVNLSRAEVHGVIT 71

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           +Y  F+ +P   R  +Q+C    C   G + L+     ++       + DG  + E   C
Sbjct: 72  YYHHFRSAPA-ARHVIQICRAEACQSMGADALLAHAELRLGCSAHGHSKDGNFTLEPAFC 130

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            G C ++P + I ++ +  +T    + ++  +
Sbjct: 131 LGLCASSPAMTINEEPHARMTTRSFDALVAQY 162


>gi|16330690|ref|NP_441418.1| bidirectional hydrogenase complex protein HoxE [Synechocystis sp.
           PCC 6803]
 gi|1653182|dbj|BAA18098.1| potential NAD-reducing hydrogenase subunit [Synechocystis sp. PCC
           6803]
          Length = 173

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    ++  + R      Q A+I +L +AQE  G++    +  VA  L +   RV  +A
Sbjct: 20  DKRFKVLDATMKR--NQFNQDALIEILHKAQEIFGYLEEDVLLYVARGLKLPLSRVFGVA 77

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L P G    V VC  T C ++G   L++    ++H KP     DG +S     
Sbjct: 78  TFYHLFSLKPSGKHTCV-VCLGTACYVKGAGDLLKTLDQEVHLKPGETTEDGQMSLVTAR 136

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C GAC  AP V+           E +   I
Sbjct: 137 CIGACGIAPAVVYDGKVLGKQNDEAVLAAI 166


>gi|71280180|ref|YP_270680.1| formate dehydrogenase subunit gamma [Colwellia psychrerythraea 34H]
 gi|71145920|gb|AAZ26393.1| formate dehydrogenase, gamma subunit [Colwellia psychrerythraea
           34H]
          Length = 163

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +++    +  +I ++       A++P+L   Q    ++   A+ ++A  L+++   V  +
Sbjct: 5   NDKGLQQIATIIEQH--QTLPGAMLPILHAIQNDLSFIPSNALPLIAKALNVSKAEVHGV 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+    G    +++C    C   G   L E  +  +       + D   + E V
Sbjct: 63  ISFYHHFRTEEPGA-HVIEICRGESCQAMGSRALEENIKQNLSIDYHQTSKDRQYTLEPV 121

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C G C  +P + IG D + +L  ++ E+II + +T
Sbjct: 122 YCLGNCACSPAMRIGDDIHGELDLQKFEQIIASLNT 157


>gi|301060420|ref|ZP_07201279.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445474|gb|EFK09380.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 155

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +  ++  Y   R  S +IP+L  AQ   GW+    ++++A+ L +    V  +A+FY
Sbjct: 7   EAALKNILVFYEGKR--SELIPILQEAQGIHGWLPGKTMQLIADFLHINEGEVHSVASFY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            QF+L P+G +  V VC  T C +RG  +++E     +  K    + D   + E V C G
Sbjct: 65  NQFRLMPLGRK-MVTVCRGTACHIRGAPQILEDIGQSLRLKEGETSPDLEYTLESVACIG 123

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            C  AP+V +    + ++T ER   +    S 
Sbjct: 124 CCALAPVVKVNHKIHGEMTRERAVTLFPKLSE 155


>gi|169634178|ref|YP_001707914.1| NADH dehydrogenase subunit E [Acinetobacter baumannii SDF]
 gi|169152970|emb|CAP02016.1| NADH dehydrogenase I chain E [Acinetobacter baumannii]
          Length = 169

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
             YP  R  +A +  L   Q + GWV  A +  +A +L ++   +  +ATFY +    PV
Sbjct: 30  GHYPYPR--AASLDALKCVQRRNGWVDDAQMNAIAQLLTISVADLEGVATFYNRIYRQPV 87

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  + +C +  C L G E L EV + ++  +      DG  +   + C G C   P +
Sbjct: 88  G-RHVILLCDSIACFLMGAETLAEVFQRELGIQFGQTTQDGRFTLLPICCLGNCDKGPTL 146

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
           MI +DT+  +    ++++++ +
Sbjct: 147 MIDEDTHGLVEVTSIKQLLEKY 168


>gi|163846759|ref|YP_001634803.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524573|ref|YP_002569044.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
           Y-400-fl]
 gi|163668048|gb|ABY34414.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448452|gb|ACM52718.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chloroflexus sp.
           Y-400-fl]
          Length = 173

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              +   + R+       A+I +L +AQE  G++S   +  VA  L +   RV  +ATFY
Sbjct: 22  QKILEATMKRF--QYQGDALIEVLHKAQELYGFLSPELLGEVARRLKLPPSRVYGVATFY 79

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L+P G      VC  T C +RG   L+         +    ++DG  S     C G
Sbjct: 80  HFFSLAPQGE-HSCTVCLGTACYVRGAAILLRELEALSGVQAGRTSADGRFSLLTARCLG 138

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           AC  AP V++  +         L+  I A 
Sbjct: 139 ACGIAPAVVLDGEVVGHADRSDLKARIQAL 168


>gi|159027691|emb|CAO89556.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 169

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
               QSA+I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P G   
Sbjct: 31  AGYNQSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHT 90

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  T C ++G  K++E   N    K     +DG +S     C GAC  AP V+   
Sbjct: 91  CI-VCMGTACYVKGSGKILEDIENSFDVKVGETTADGEISLVSARCIGACGIAPAVVFDG 149

Query: 155 DTYEDLTPERLEEIIDAFS 173
                   E +   + +FS
Sbjct: 150 VVAPKQDSETVLAKLKSFS 168


>gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 567

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    F++E+   +  ++   P  R +  +I  L   Q++ G +S   I  +A  + +  
Sbjct: 27  PKGRQFTDEAQAEILRLLGDRP--RRRDLLIEFLHLIQDEHGHISADHIAALATEMRIGQ 84

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E ATFY  F +            ++VC +  C + G ++L +   + +        
Sbjct: 85  AEIYETATFYAHFDVVKEDETPPPALTIRVCDSLSCEMAGAQQLQKALEDGL-------- 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE+++  I A      DT    P  + 
Sbjct: 137 DPAAVRVVRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHLPDYET 191

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218
            ++  A GG T L +       +K +DD +S
Sbjct: 192 YAAFTANGGYTKLKELRDGGDWEKVQDDILS 222


>gi|298528248|ref|ZP_07015652.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511900|gb|EFI35802.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 161

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E    +  +I      R +  +IP L   Q + G++    ++ ++  L+++   +  +A
Sbjct: 9   DEKMGELGAIIG--EEERKRGILIPALHEIQNKMGYLDPEELKELSKSLNISLTEIYSVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F   P G +  V+VC  T C +RG + +++    +   K      D T++ E V 
Sbjct: 67  SFYKMFHFKPRGKK-IVKVCFGTACYVRGAKVVLDSLSEEFDVKDGETTEDLTMTLETVG 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  AP+V   ++   ++  ++L+  ID+   
Sbjct: 126 CVGCCGLAPVVTCNEEVVGEIDGKKLDAFIDSVKE 160


>gi|170727207|ref|YP_001761233.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
           ATCC 51908]
 gi|169812554|gb|ACA87138.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Shewanella woodyi
           ATCC 51908]
          Length = 179

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
             +  S S +    ++E+IS  P  +     I  L   Q + GWVS A++  ++    + 
Sbjct: 15  DTAEISLSSKEQQGIDELISHSP--QLAGITIDALKLIQAERGWVSDASLHALSLYTQIP 72

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFY      PVG +  +  C    C L G E + +  + +++       +D 
Sbjct: 73  VADLDSVATFYNLIFRQPVG-KVVLHPCDGISCDLMGGEHIRQCLKQQLNITAGETTTDN 131

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             +   + C GAC  AP+++  K  +E++T + L +++   ST
Sbjct: 132 RFTLIPLPCLGACDKAPVMIANKQLFENMTTDELPKLLSTLST 174


>gi|116748291|ref|YP_844978.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697355|gb|ABK16543.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 162

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
                  +  +I   P     +++I +L +AQE  G++ +     VA  L ++   +  +
Sbjct: 10  DAALVKGLARIIE--PYRGQPNSLIQVLAKAQEYIGYLPKWVQVQVAEGLGLSLQEIYGV 67

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY  F L P G R  + VC  T C ++G + +++  R+ I  KP     D   + E V
Sbjct: 68  TTFYAFFSLIPRG-RHKLSVCAGTACYVKGTKNVLKGVRDAIGIKPGQTTPDSRFTMEIV 126

Query: 139 ECQGACVNAPMVMIGK-DTYEDLTPERLEEIIDAF 172
            C GAC  AP V++   D +  L  E++ EI+  +
Sbjct: 127 RCIGACGLAPAVIVNGKDVHGRLEAEQIPEILSLY 161


>gi|218780115|ref|YP_002431433.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761499|gb|ACL03965.1| Putative NADH:ubiquinone oxidoreductase 24 kD subunit, NuoE
           [Desulfatibacillum alkenivorans AK-01]
          Length = 154

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           +  + +  +I  YP    Q +++ +L   QE  G++S   ++   + + +       +AT
Sbjct: 2   QQTVDIESIIDHYPG--VQESMVFILQDIQEAFGYISLENMQAACDHVGVPLTHAYSMAT 59

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F+L PVG    + VC  T C L+G  ++++    +++        D   + E V C
Sbjct: 60  FYKSFRLEPVGE-HEIHVCLGTACHLKGGPRIVDELERRLNVHAGATTEDMRYTLETVNC 118

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            GAC  AP+V++ K+    +T +++++ + 
Sbjct: 119 LGACALAPVVVVDKEYVPKVTAKKIQKTLK 148


>gi|322417696|ref|YP_004196919.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
 gi|320124083|gb|ADW11643.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M18]
          Length = 160

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A++  A +L ++ ++V E+ATFY      PVG +  + V
Sbjct: 21  REAAVDVMKELQAHYGWLTDEAVQEAAALLGLSPLQVEELATFYEMIYRRPVGRK-VIHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C    C+ LI   ++++   P    +DG  +     C G C ++P + +G   Y 
Sbjct: 80  CDSISCWCADCDGLIRHLKDRLGVGPGETTADGMFTLIPCCCMGMCGDSPAMSVGGTPYG 139

Query: 159 DLTPERLEEIID 170
            LTPE  +E+++
Sbjct: 140 RLTPELADEVLE 151


>gi|283850903|ref|ZP_06368189.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283573826|gb|EFC21800.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 166

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  +E    ++ +++     R + A I ++   Q   G++   A+E  A +L M  + +
Sbjct: 1   MALPKELVADLSGMVAT--AERTREAAIDVMYALQRHYGYLCDEAMEYAARLLGMTTLEL 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY      PVG R  + VC +  C +   + + +     +   P     DG  + 
Sbjct: 59  ESLATFYDFLYRRPVG-RYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTV 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
               C G C NAP ++I    Y+ L PE++  I+D    
Sbjct: 118 LPAACIGNCHNAPTMLINGRFYDRLHPEKINAILDELRA 156


>gi|170751377|ref|YP_001757637.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657899|gb|ACB26954.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 157

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           SA   + +I+ +  +  + A +P+L   QE  G+V   A+ ++A+ L+++   V    TF
Sbjct: 8   SAERASGIIAEH--THLEGATLPILHALQETFGYVDSGAVPLIADALNLSRAEVHGCITF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  V++C    C   G +KL      ++        +DG+ + E V C 
Sbjct: 66  YHDFRAHPAG-RHEVKLCRAEACQAMGSDKLHREILGRLGCGWHETTADGSATVEPVYCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C N P  ++  +    LT + LE  +    
Sbjct: 125 GLCANGPAALVDGEPVAHLTADALEAALTEVR 156


>gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 567

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    F++E+   +  ++   P  R +  +I  L   Q+  G +S   I  +A  + +  
Sbjct: 27  PKGRQFTDEAQAEIQRLLGDRP--RRRDLLIEFLHLIQDTHGHISADHIAALAVEMRIGQ 84

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E ATFY  F +   G        ++VC +  C + G ++L +   +     P    
Sbjct: 85  AEIYETATFYAHFDVVKEGETPPPALTIRVCDSLSCEMAGAQQLKKALED--GLDPSE-- 140

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE+++  I A     GDT    P  + 
Sbjct: 141 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----GDTHAHLPDYET 191

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218
            ++    GG T L +       +  ++  ++
Sbjct: 192 FATYVENGGYTKLKELREGGDWEAVQEQILA 222


>gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
 gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
          Length = 717

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               +   I+ +       ++I LL   Q   G++ RAA+  +A  L+++   V  + ++
Sbjct: 27  EREALEHAIADHAA--RPGSLIELLHSLQNALGFIPRAAVPAIAEALNLSRAEVHGVVSY 84

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y   +  P G R  +Q+C    C  RG + L    +  +  +    ++DG+++ E V C 
Sbjct: 85  YPHLREQPHG-RTLIQICRAEACKSRGGDALFAHAQAAMGCQAHGTSADGSVTLEPVYCL 143

Query: 142 GACVNAPMVMIGK-DTYEDLTPERLEEIIDAFSTGQGDT 179
           G C  +P VM+ + + +  +T +RL+ ++      Q +T
Sbjct: 144 GLCAQSPAVMVDESEVHARMTEDRLDALLAKIQQEQLET 182


>gi|284042619|ref|YP_003392959.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
           DSM 14684]
 gi|283946840|gb|ADB49584.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Conexibacter woesei
           DSM 14684]
          Length = 212

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P++     E    +   +++YP  R  SA IP L  AQ+  GW S  AIE VA ++ + 
Sbjct: 35  DPATTPVPAELRTQIEAAMAKYPNFR--SAAIPALHAAQDLHGWCSPEAIEQVACVMRLT 92

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATFY  F++ PVG R  V VC    C LRG + ++   ++           D 
Sbjct: 93  PGYLTAVATFYDMFEMKPVG-RHRVYVCTNISCSLRGADSVLAAVQDAAG-------DDA 144

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
             +    EC GAC  APM  +  +    L     E+++     G+   + P  Q+ R + 
Sbjct: 145 DFNVRPFECLGACDIAPMASVNGEFVGPLDLADAEQLVADLREGR--EVLPAKQLSRRAC 202

Query: 192 APAG 195
           A  G
Sbjct: 203 ADPG 206


>gi|166362849|ref|YP_001655122.1| bidirectional hydrogenase complex protein HoxE [Microcystis
           aeruginosa NIES-843]
 gi|166085222|dbj|BAF99929.1| putative bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
          Length = 169

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           R  E++  PS     ++    ++  + R      QSA+I +L +AQE  G++    +  V
Sbjct: 7   RQTEKKEHPSG----DKRFKVLDITMKR--AGYNQSALIEVLHKAQEAFGFLEEDVLLYV 60

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A  L +   RV  +ATFY  F L P G    + +C  T C ++G  K++E   N    K 
Sbjct: 61  ARALKLPLSRVYGVATFYHLFSLKPAGKHTCI-ICMGTACYVKGSGKILEDIENAFDVKV 119

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
               +DG +S     C GAC  AP V+           E +   + +FS
Sbjct: 120 GETTADGEISLVSARCIGACGIAPAVVFDGVVAPKQDSETVLAKLQSFS 168


>gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia
           acidovorans SPH-1]
          Length = 727

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V   I+ +  +R    +I LL   Q+  G +  AA+  +A+ L+++   V  + ++
Sbjct: 27  EREAVEHAIAVH--ARRPGPLIELLHAVQDMLGHIPEAAVPRIADALNLSRAEVHGVISY 84

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------KPLHRNSDGTLSW 135
           Y  F+ +P G R  +QVC    C  RG + L+      +             ++DG ++ 
Sbjct: 85  YPHFRSTPAG-RHVLQVCRAEACQSRGADALLAHAGQALGCGSSGHGHEHGTSADGAVTL 143

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           E V C G C ++P VM+    +  ++   L+ +I      +
Sbjct: 144 EPVYCLGLCASSPAVMLDGQPHAHVSANGLDALIAQCRQPE 184


>gi|62632269|gb|AAX89148.1| HoxE [Allochromatium vinosum]
          Length = 160

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA  LD+   +V  +ATFY  F L P G R    VC 
Sbjct: 29  ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 87

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   LIE  +      P     D  LS     C GAC  AP V++  +     
Sbjct: 88  GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDGEVLGKQ 147

Query: 161 TPERLEEIIDAFS 173
             + L   ++  S
Sbjct: 148 ATDTLVATLEELS 160


>gi|163853800|ref|YP_001641843.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           extorquens PA1]
 gi|218532744|ref|YP_002423560.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240141252|ref|YP_002965732.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens AM1]
 gi|254563761|ref|YP_003070856.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit
           gamma [Methylobacterium extorquens DM4]
 gi|28207553|gb|AAO32144.1| NAD-linked formate dehydrogenase gamma subunit [Methylobacterium
           extorquens AM1]
 gi|163665405|gb|ABY32772.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           extorquens PA1]
 gi|218525047|gb|ACK85632.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240011229|gb|ACS42455.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens AM1]
 gi|254271039|emb|CAX27046.1| NAD-dependent formate dehydrogenase, Molybdenum containing, gamma
           subunit [Methylobacterium extorquens DM4]
          Length = 157

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +A     +++       + A +P+L   QE  G+V   A+ ++A+ L+++   V    TF
Sbjct: 8   NATRAAAIVA--GLQSLEGATLPILHALQEAFGYVDAQAVPMIADALNLSRAEVHGCLTF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P   R HV++C    C   G ++L     +++       ++DG ++ E V C 
Sbjct: 66  YHDFRREPPAGRHHVKLCRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C NAP  ++  +    L+ E L+  +     
Sbjct: 125 GLCANAPAALVDDEPLARLSAESLDAALKEARA 157


>gi|217979754|ref|YP_002363901.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
           silvestris BL2]
 gi|217505130|gb|ACK52539.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocella
           silvestris BL2]
          Length = 161

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +A    E+I  +     +  ++P+L   QE+ G+V+  A+ ++A  L+++   V  + +F
Sbjct: 12  NAERAAEIIHEHLG--LEGPMLPILHALQEEFGYVNGDAVPMIAKALNLSRAEVHGVTSF 69

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  +++C    C   G E+L       +  +     +DG L+ E + C 
Sbjct: 70  YHDFRHEPAG-RHVLKLCRGESCQSMGSEELARKFLTGLGIEWGGTTADGDLTVEAIYCL 128

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           G C  +P  M+  +    L  E L E ++  S 
Sbjct: 129 GLCACSPAAMLDDELIGALDEETLAEAVNTVSA 161


>gi|260427116|ref|ZP_05781095.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
           SE45]
 gi|260421608|gb|EEX14859.1| NAD-dependent formate dehydrogenase gamma subunit [Citreicella sp.
           SE45]
          Length = 155

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S+ +A  +  +I        +  ++P+L   QE    V  AA+ ++A  L++    V  +
Sbjct: 4   SKPTADEIQALID--GQMHLEGPLLPILHALQEAYDHVPEAALGMIAETLNLTKAEVHGV 61

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+ +P G R  V++C    C   G   L +    K+        SDG ++ E V
Sbjct: 62  MSFYHDFRKAPAG-RHVVKICRAEACQSMGANALSDAVLEKLGIGWGGTTSDGLVTVEAV 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C  AP  M+           RLE+ ++ 
Sbjct: 121 YCLGLCACAPAAMVDDRLIARADAARLEKALEG 153


>gi|302875424|ref|YP_003844057.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|307689022|ref|ZP_07631468.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|302578281|gb|ADL52293.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 157

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
             +F F+     +++ +I        +S+++ LL   Q   G++ +     ++  LD++ 
Sbjct: 2   NKTFDFN-----FIDGIID--GLGCKESSIVHLLQSIQNHYGFLPKEVFSYLSQKLDISE 54

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDG 131
            R+  +ATFY  F L P G +  ++VC  T C ++    +++  R +++   +     D 
Sbjct: 55  ARIYSVATFYKNFSLDPKG-KYIIKVCDGTACHVKKSIPVLDRLRKELNLSEVKLTTDDL 113

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             + E V C GAC  AP++M+    Y  +TP++  E++   S
Sbjct: 114 LFTVETVHCLGACGRAPVLMVNNKVYPSMTPDKAIELVKNLS 155


>gi|281357445|ref|ZP_06243933.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281316048|gb|EFB00074.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 150

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R  S +I  L   Q  EG+VS  +I  ++    +  + V  + +FY QF+    G +  
Sbjct: 12  GREPSNLIKGLQAVQGVEGYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRVKPG-KYK 70

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  T C ++G   + E     +  +    +  G  S E V C G C  AP++ +   
Sbjct: 71  IAICDGTACHIKGSPLVQEWVSRALGIEDGQTDERGHFSLETVACLGCCSLAPVMSVNGR 130

Query: 156 TYEDLTPERLEEIIDAFST 174
            Y  L  +   +I+  +  
Sbjct: 131 VYGKLDRKSTIKILKEYEA 149


>gi|288941581|ref|YP_003443821.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
           vinosum DSM 180]
 gi|288896953|gb|ADC62789.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Allochromatium
           vinosum DSM 180]
          Length = 164

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           A+I  L   Q+  G++   ++  VA  LD+   +V  +ATFY  F L P G R    VC 
Sbjct: 33  ALIETLHSVQDAFGYLDETSLRFVAASLDLPVSKVFGVATFYHIFMLKPKG-RHTCVVCT 91

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
            T C ++G   LIE  +      P     D  LS     C GAC  AP V++  +     
Sbjct: 92  GTACYIKGAGGLIEGLQEHYGIDPGETTGDDRLSLLTARCVGACGLAPAVVVDGEVLGKQ 151

Query: 161 TPERLEEIIDAFS 173
             + L   ++  S
Sbjct: 152 ATDTLVATLEELS 164


>gi|171059433|ref|YP_001791782.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
           cholodnii SP-6]
 gi|170776878|gb|ACB35017.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Leptothrix
           cholodnii SP-6]
          Length = 173

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           + +   V  VI+    +    A++P+L   Q+  G +   A+  +A  L+++   V  + 
Sbjct: 8   DAALATVRAVIA--ERAHLAGALLPILHGVQDAIGHIPSEAVPEIARALNLSRAEVHGVI 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEV 138
           T+Y  F+  P G R  +QVC    C  RG E L+   R ++      HR++DG  S E V
Sbjct: 66  TYYHHFRAEPAG-RHVLQVCRAESCQARGGEALLAQARERLGCSADVHRSADGAWSVEPV 124

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C ++P + I +  +  +T  RL+ ++DA
Sbjct: 125 YCLGLCASSPAIQIDERQHARVTATRLDALLDA 157


>gi|297616329|ref|YP_003701488.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144166|gb|ADI00923.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 148

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
             +I++Y        +I      Q+++ ++   AI   A   ++       +ATFY+ F 
Sbjct: 5   KAIIAKYKD--LPGGIIEAYHAIQKEQSFIPEEAIIAAAEAFNIPVKDAYGVATFYSMFS 62

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           +   G +  +++C + PC + G  +++     ++  K      DG  + E  EC G C  
Sbjct: 63  VKTRG-KNVIRICESAPCHIAGAAQVVAALEKELGIKMGETTPDGKFTLEFTECVGQCQA 121

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
            P++ I    Y D+TPE++  I+  + 
Sbjct: 122 TPVITINGKPYGDITPEKIPAILAEYK 148


>gi|254413281|ref|ZP_05027052.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179901|gb|EDX74894.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit superfamily
           [Microcoleus chthonoplastes PCC 7420]
          Length = 197

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
                  +I +L +AQE  G++    +  VA  L +   RV  +ATFY  F L P GT  
Sbjct: 59  AQYRPDVLIEVLHKAQEAFGYLEEDVLLYVARGLKLPLSRVYGVATFYHLFSLKPGGTHT 118

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C ++G  +++         +      DG +S     C GAC  AP V+   
Sbjct: 119 CV-VCTGTACYVKGGGQVLSALEEHFGIQVGDTTPDGEMSLLSARCLGACGIAPAVVFDG 177

Query: 155 DTYEDLTPE 163
                 T E
Sbjct: 178 TVAPKQTAE 186


>gi|325294616|ref|YP_004281130.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065064|gb|ADY73071.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 167

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             VI +L   QE+  ++S+ A+E V+  L++   ++  IATFY+ F L PVG +  + VC
Sbjct: 22  GKVISILEDIQEKNKYLSKEALEYVSEKLNIPLSQLYSIATFYSFFNLKPVG-KHIISVC 80

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLH---------RNSDGTLSWEEVECQGACVNAPMV 150
             TPC ++G  +LI+     +  K               D + S     C G C  AP++
Sbjct: 81  TGTPCHVKGAPQLIKTLERLLGIKQDEVSEDSKFFLTTHDRSFSLTAARCFGCCSMAPVI 140

Query: 151 MIGKDTYEDLTPERLEEIIDAF 172
            I    Y  +T   L +I+  +
Sbjct: 141 RIDDKIYGYVTVNDLPKILKEY 162


>gi|189499446|ref|YP_001958916.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189494887|gb|ACE03435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 195

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 15/191 (7%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V + I+     +  SA +PLL   Q + G++ R A++++    D+   ++  +ATFY+QF
Sbjct: 15  VQKWIA--ETGKSVSAAVPLLQAVQNEYGYLPREAMDIIVAETDVGASQLYGVATFYSQF 72

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGA 143
           +L PVG R  ++VC  T C + G +++    R  +  K       S+G+ + E+V C G 
Sbjct: 73  RLDPVG-RHVIKVCHGTACHVSGADRINTALRQSLGIKNEDEDTASNGSYTVEDVACIGC 131

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
           C  AP+++IG +T+ +L     +  +   +  QG+ + PG + ++  +            
Sbjct: 132 CSLAPVMVIGDETFGNLKGTDAQRSLKKHARQQGEFL-PGHEEEKSEAEAP--------- 181

Query: 204 NSKKRGKKKKD 214
           + +  GK+KK+
Sbjct: 182 DRRSPGKQKKE 192


>gi|15806513|ref|NP_295224.1| NADH dehydrogenase I subunit E [Deinococcus radiodurans R1]
 gi|6459263|gb|AAF11068.1|AE001994_4 NADH dehydrogenase I, E subunit [Deinococcus radiodurans R1]
          Length = 207

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%)

Query: 16  FSFSEESAIWVNEVISRYP--PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            S+  +    V E+ SRYP  P   +SA++PLL   Q+ EG+V+   +  +A +      
Sbjct: 1   MSYFADKTPLVAEIFSRYPDTPQGRRSALMPLLREVQDAEGFVAAPRLAEIAELCGTTAT 60

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            V  + +FY+ +   P G R H+QVC T  C L G + L +    ++  +P     DG  
Sbjct: 61  EVRSVMSFYSTYHTVPTG-RYHLQVCSTLMCALAGSDALWDELVTRLDVQPGEVTPDGRF 119

Query: 134 SWEEVECQGACVNAPMVMIGKD-TYEDLTP 162
           S ++VEC G+C  AP++ +  +  YE + P
Sbjct: 120 SVQKVECLGSCGTAPVLQLNDEGFYERVGP 149


>gi|301061250|ref|ZP_07202032.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
 gi|300444569|gb|EFK08552.1| NADH dehydrogenase subunit E [delta proteobacterium NaphS2]
          Length = 165

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
               E+    + + I      R Q+  I ++   Q+  G++S  A+   A++L M  + +
Sbjct: 1   MMLPEDKKEELQKQILEGEAPREQA--INVMFALQKCYGYLSDEAVAEAAHMLGMTTLEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            E+ATFY      PVGT   + VC ++ C + G E +++    K+   P    +DG  + 
Sbjct: 59  EELATFYDFLYREPVGT-YVIHVCDSSICWMYGEETVMDYLVKKLAITPGETTADGLFTI 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             V C G C +AP+++I    Y  LTPE ++ I++   
Sbjct: 118 LPVCCVGYCDHAPVMLINGKPYGPLTPEYIDRILEDIR 155


>gi|187250941|ref|YP_001875423.1| putative FeFe hydrogenase subunit HydC [Elusimicrobium minutum
           Pei191]
 gi|186971101|gb|ACC98086.1| Putative FeFe hydrogenase subunit HydC (NuoE) [Elusimicrobium
           minutum Pei191]
          Length = 163

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           +    I + ++  ++     Q ++I +L   Q+  G+V R     ++ ++++   ++ E+
Sbjct: 7   TAAPKIDLKKITDKW--QGKQGSLIMILHEIQDTLGYVPREISLELSQLINVPLAQIYEV 64

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+L+P   +  + VC  T C L+G  ++I+     +  K   +  D   S   V
Sbjct: 65  LSFYHFFKLTPP-AKYRISVCTGTACYLKGAPEIIKEFTRLLGIKEGEQTKDSNFSLTGV 123

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C G C  AP+V +    +  +    ++ I+  + 
Sbjct: 124 RCVGCCGLAPVVSVNGKIFGAVKATEVKNIVQEYK 158


>gi|118473363|ref|YP_884575.1| formate dehydrogenase, subunit gamma [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174650|gb|ABK75546.1| formate dehydrogenase, gamma subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 161

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           A  V E+ + +   R    ++P+L   QE+ G V   A+ V+A  L+++   V  + TFY
Sbjct: 12  ATLVREIAADHRDHR--GPLLPILHAVQERLGCVPAEAVPVLAEELNLSRADVHGVITFY 69

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F+  P G R  V+VC    C   G  +L+   +++   +      DGTL+ E+V C G
Sbjct: 70  HDFRSEPAG-RTTVRVCRAEACQALGASRLVAHLQDRHGVQLGDATDDGTLTAEQVFCLG 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C   P   +    Y  L   RL  +ID+
Sbjct: 129 NCALGPSAQVDGRLYGRLDEARLSALIDS 157


>gi|39933809|ref|NP_946085.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           CGA009]
 gi|39647656|emb|CAE26176.1| putative NAD-dependent formate dehydrogenase gamma subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 156

 Score =  167 bits (425), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
             +        +++I+    +  + A + +L   Q+  G+V + A  +VA  L+++   V
Sbjct: 1   MQYEPWEPARASDIIA--GLTHKEGATLLMLQALQQAFGYVPQDAEPMVAQALNLSRAEV 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY  F+  P G R  +++C    C   G + L      ++        +DG ++ 
Sbjct: 59  HGVLTFYPDFRREPPG-RHVLKLCRAEACQAAGGDALAAHAETRLGVTFGATTADGAVTL 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           E   C G C  AP  M+ +     L   +L+ ++  
Sbjct: 118 EPAYCLGLCATAPSAMMNERVVGRLDAVKLDALLAE 153


>gi|124268892|ref|YP_001022896.1| NAD-dependent formate dehydrogenase subunit gamma [Methylibium
           petroleiphilum PM1]
 gi|124261667|gb|ABM96661.1| NAD-dependent formate dehydrogenase gamma subunit [Methylibium
           petroleiphilum PM1]
          Length = 161

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S   V  V++R        A++P+L   Q+Q G +   A+  +A  L+++   V  + T+
Sbjct: 4   SLAAVRAVLARRADE--PGALLPILHEVQDQLGCIPADAVPEIAGALNLSRAEVHGVITY 61

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  +QVC    C   G E L+     ++  +    +SDG  + E V C 
Sbjct: 62  YHHFRGEPAG-RHVIQVCRAEACQALGAEALLTHAERRLVCRSHASSSDGRYTLEPVFCL 120

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C ++P ++I +  +  ++P   + +I A 
Sbjct: 121 GLCASSPAIVIDERLHARISPAAFDRLIGAL 151


>gi|39998532|ref|NP_954483.1| NADH dehydrogenase subunit E [Geobacter sulfurreducens PCA]
 gi|39985479|gb|AAR36833.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens PCA]
          Length = 162

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +E    V   ++       + A + ++   Q   GW++  A+   A +L +  ++V E
Sbjct: 6   LKKELQARVAHAVT------SREAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG R  + VC +  C   G E L+      ++ +P    +DG  +   
Sbjct: 60  LATFYEMIYRRPVGKR-VIHVCDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID----AFSTGQG 177
             C G C  AP +M+G   +  +T ER  EI+       +  +G
Sbjct: 119 CCCLGNCGEAPTLMVGDTLHGRVTLERAGEILATERRQLAAAEG 162


>gi|115526638|ref|YP_783549.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisA53]
 gi|115520585|gb|ABJ08569.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 160

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P +  +    A    E+I+       + A + +L   QE  G+V + AI ++A  L+++ 
Sbjct: 2   PIAVVYEPWDAERAAEIIAELKS--HEGATLVILHAMQEAFGYVPQDAIPMIALALNLSR 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  + TFY  F+ +P G R  +++C    C   G + L       +        +DG 
Sbjct: 60  AEVHGVFTFYHDFRKAPAG-RHVLKLCHAEACQAAGGDALAARAEKTLGISVGDTRADGV 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           +S E + C G C  AP  M+       LT   L+ ++  
Sbjct: 119 VSLEPIYCLGLCATAPSAMLDGRLIGRLTEAGLDALLAE 157


>gi|325274758|ref|ZP_08140794.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
 gi|324100102|gb|EGB97912.1| formate dehydrogenase subunit gamma [Pseudomonas sp. TJI-51]
          Length = 160

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++R        A++P+L   Q    ++  AA+  +A+ L+++   V  + +FY  F
Sbjct: 11  IQRILAR--DKDTPGALLPMLHAIQHDLCYIPDAAVPELAHALNLSLAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C  RG E L    R ++       ++DG +S   V C GAC 
Sbjct: 69  RTAPP-ARHTLRLCRAESCQSRGAEALAAQLREQLALDDHGTSADGAISLRPVYCLGACA 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +P + +    +  LTPERL  +++A   
Sbjct: 128 CSPALELDGQVHARLTPERLRALVNACQE 156


>gi|239905978|ref|YP_002952717.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
 gi|239795842|dbj|BAH74831.1| NADH-quinone oxidoreductase chain E [Desulfovibrio magneticus RS-1]
          Length = 166

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 3/164 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
              E    +  +++       + A + ++   Q   G++   A+   A +L M  + +  
Sbjct: 4   LPPELQADLRRLVTA--VDNPREAAVDVMYALQHHYGYLCDEAMHRAAEVLGMTTLELES 61

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG R  + VC +  C +   + + +     +   P     DG  +   
Sbjct: 62  LATFYDYLYRRPVG-RYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGLFTVLP 120

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             C G C NAP ++I    Y+ LTPE ++ +I     G  + +R
Sbjct: 121 AACVGNCHNAPTMLINGRFYDRLTPEAVDAVIAELRAGTEEPVR 164


>gi|326567653|gb|EGE17761.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 12P80B1]
          Length = 169

 Score =  167 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHHYPQAR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGISVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEPLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
 gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
          Length = 655

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 21/191 (10%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
                +    ++E I+ YP S+ +SA +PLL   QE  G++S  AI  +A  L++  I +
Sbjct: 1   MEVPSDLLAKIDEAITHYPASK-RSASLPLLHLWQEHFGFISDEAISWIAQKLELQPINI 59

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK------------ 123
           LE+ TFY  F+  P G R  ++VC T  C + G  +L E                     
Sbjct: 60  LELVTFYPMFRREPAGKRH-IRVCRTLSCAMAGSYELKERIAAAAGIDLKKWAEEGAHHA 118

Query: 124 ------PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
                 P+  + DG  S E VEC  +C +AP+ M+  +  E++  E   +++        
Sbjct: 119 NAGHGNPIAVSPDGQYSIEFVECLASCGSAPVAMVDDNFKENVKLEDAAKLL-KLQRSDA 177

Query: 178 DTIRPGPQIDR 188
              R  P   R
Sbjct: 178 TMPRVRPPHPR 188


>gi|296112935|ref|YP_003626873.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
 gi|295920629|gb|ADG60980.1| NADH-quinone oxidoreductase subunit E [Moraxella catarrhalis RH4]
 gi|326569468|gb|EGE19528.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC8]
 gi|326577452|gb|EGE27336.1| NADH dehydrogenase subunit E [Moraxella catarrhalis O35E]
          Length = 169

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP +R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHHYPQAR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|298507476|gb|ADI86199.1| NADH dehydrogenase I, E subunit [Geobacter sulfurreducens KN400]
          Length = 162

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +E    V   ++       + A + ++   Q   GW++  A+   A +L +  ++V E
Sbjct: 6   LKKELQARVAHAVT------SREAAVDVMKALQRHYGWLTDEAVGEAAELLGLTPLQVEE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATFY      PVG R  + VC +  C   G E L+      ++ +P    +DG  +   
Sbjct: 60  LATFYEMIYRRPVGKR-VIHVCDSISCWALGGESLMAHLAAALNIEPGGTTADGLFTLLP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID----AFSTGQG 177
             C G C  AP +M+G   +  +T ER  EI+       +  +G
Sbjct: 119 CCCLGNCGEAPTLMVGDTLHGRVTLERAGEILATERRQLAAAEG 162


>gi|257066579|ref|YP_003152835.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798459|gb|ACV29114.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 164

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 40  SAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
             V+P L + Q    ++    ++++A  L++    +  +ATFY+ F L P G    + VC
Sbjct: 27  GCVMPALQKCQNVFSYIPEPVVDLMALKLNVPSSEIYGVATFYSHFSLKPKGE-HDICVC 85

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-DTYE 158
             T C + G +K+++    ++  +      DG +S  E  C G C +AP+VMI   D  E
Sbjct: 86  LGTACYVNGSDKILKSLAEELGVEVGDTTEDGKISLSEARCVGECGSAPVVMIDGEDFVE 145

Query: 159 DLTPERLEEII 169
            + P ++  II
Sbjct: 146 KVDPSQVHNII 156


>gi|288817440|ref|YP_003431787.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
 gi|288786839|dbj|BAI68586.1| NADH dehydrogenase I chain E [Hydrogenobacter thermophilus TK-6]
 gi|308751047|gb|ADO44530.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 154

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 2/154 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EES +   +  + Y P R Q A++  L   Q   G +   A+E VA ILD+    V  + 
Sbjct: 3   EESLLEKLKQHAEYFPKREQ-AILLCLHEVQNHYGHIPEFALEEVAKILDLPLNHVENVV 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F       R  ++VC +  C L G +KLI+  R  ++        DG      V+
Sbjct: 62  SFYDMFDRG-EPARHRIRVCVSVVCHLMGKDKLIKALRELLNIDFGQVTKDGRFKLLAVQ 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C GAC  AP  M+ +D Y+    E+L E++  ++
Sbjct: 121 CLGACSEAPFFMVDEDAYKFENKEKLNEVLSRYA 154


>gi|332529345|ref|ZP_08405306.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
           gracilis ATCC 19624]
 gi|332041143|gb|EGI77508.1| NAD-dependent formate dehydrogenase subunit gamma [Hylemonella
           gracilis ATCC 19624]
          Length = 160

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S E    V  V+     S+   A++P+L   Q+Q G++    +  +A  L+++   V  +
Sbjct: 14  SPEQRAAVRAVLDA--RSQQAGALLPILHDIQDQLGYIPADVVVDIAEALNVSRAEVHGV 71

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            T+Y  F+  P    A VQVC    C   G E L E    K             ++ E V
Sbjct: 72  ITYYHHFRSEPARG-AVVQVCRAEACQSCGSEALWEHASKK---AAGQ-----NVTLEPV 122

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            C G C  AP V I    +  +TP + + ++      
Sbjct: 123 YCLGLCATAPAVQIQDKFHARVTPTKFDRLLAQLKEA 159


>gi|330720273|gb|EGG98632.1| NAD-dependent formate dehydrogenase gamma subunit [gamma
           proteobacterium IMCC2047]
          Length = 164

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 3/150 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               V+E+I  +       A++P+L   Q+ +G++ + A+ ++A  L+     V  + +F
Sbjct: 8   DRQRVSEII--HSTKSMAGALLPMLHAIQDSQGYIPKDAVPMIAESLNQTRAEVHGVISF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+ +P   R  +++C    C  RG  +L    + K+        +    S + V C 
Sbjct: 66  YHHFRQTPP-ARKRIEICRAEACQARGSRELEAYAKEKLGISYHGMTASRDFSLDPVYCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G C   P V IG +    +   R +E++D 
Sbjct: 125 GNCACGPSVRIGDEVVGRVDKTRFDELVDD 154


>gi|114705204|ref|ZP_01438112.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539989|gb|EAU43109.1| formate dehydrogenase, gamma subunit protein [Fulvimarina pelagi
           HTCC2506]
          Length = 157

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            F E+ AI    ++  Y     +  ++P+L     + G++   A+ ++A  L++    V 
Sbjct: 6   EFDEDDAI---ALVEEY--KHLEGPLLPILHAFSHRYGYIGDEAVRLIAGELNLTRAEVY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY  F+  P G R  ++VC    C   G + + +     +  K    ++DG ++ E
Sbjct: 61  GVVSFYHDFKREPHG-RHVLKVCRAEACQAAGGDAIADSLEKALGIKFGETSADGAVTLE 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            V C G C  AP  M+       L   R +++   
Sbjct: 120 AVYCLGLCATAPSAMLDDRIIGRLNQPRAKKLAAE 154


>gi|116750138|ref|YP_846825.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699202|gb|ABK18390.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 190

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++ V+ R      Q A+I +L  AQE  G+++   +   A  L + +  V  +ATFY
Sbjct: 22  YKGIDRVLKR--QQYQQDALIEVLTSAQEAFGYLTEDVLIYTARQLKLPFSWVYGVATFY 79

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F L P G  + + VC  T C +    +++E    + + K      DG L+     C G
Sbjct: 80  HFFSLKPQGEHSCI-VCLGTACYVGKSNEIVEALEKEFNVKAGQTTEDGKLTVTTTRCLG 138

Query: 143 ACVNAPMVMIGKDTYEDLTPE----RLEEII 169
            C  AP+ ++         PE    +++ ++
Sbjct: 139 CCGLAPVAVLDNQVLGKELPETTIAKVKAVL 169


>gi|326561159|gb|EGE11524.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 7169]
          Length = 169

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|269837268|ref|YP_003319496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786531|gb|ACZ38674.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 180

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 20  EESAIWVNEVISR---YPPSRCQSAVI-PLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           E     +  ++ R   Y   +    +I      AQ   GWV + A +V+A+ L ++  RV
Sbjct: 10  ELDLEPLKRILERDFRYDTHQDAEELILGACQEAQNLYGWVPQPAAQVIADHLGVSVNRV 69

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFY  F+  P G +  + +C  T C + G ++LI   R++          DG L+ 
Sbjct: 70  YSLLTFYADFRTEPPG-KHFLLLCHGTACYVMGSQRLIATLRDEYGITNGEVTRDGELTL 128

Query: 136 EEVE-CQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
           + V  C G C  AP++ +   TY   LTP+RL E ++A   G+
Sbjct: 129 QVVNGCLGVCDLAPVIQVDHHTYCGRLTPDRLRETLEALKRGE 171


>gi|283778530|ref|YP_003369285.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
           DSM 6068]
 gi|283436983|gb|ADB15425.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Pirellula staleyi
           DSM 6068]
          Length = 166

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     +EE    +   I RYP    Q+  +P L    E+  +V   A+  +A +L++  
Sbjct: 6   PEKPVLTEEMIAEIKAFIPRYPS--KQAVTLPALHIVYEKLRYVPLTAVVEIARLLELHP 63

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V +  +FY  F       +  + VC +  C LRG ++L+E   +K+   P    +DG 
Sbjct: 64  SQVQDTLSFYGYFPQKKPCGKTRMWVCRSISCALRGADELLEHLSHKLDVHPGETTADGK 123

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           ++ E  EC GAC +AP ++     ++ ++    ++++     
Sbjct: 124 ITLEYAECLGACEHAPCILADTVLHKSVSQPDSDKLVAELKR 165


>gi|39937321|ref|NP_949597.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris CGA009]
 gi|192293101|ref|YP_001993706.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris TIE-1]
 gi|39651179|emb|CAE29702.1| NADH-ubiquinone dehydrogenase chain E [Rhodopseudomonas palustris
           CGA009]
 gi|192286850|gb|ACF03231.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 162

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S      +    + +  ++  +A++  L   QE EGWVS A ++  A++L +    +
Sbjct: 1   MSLSPALKTAIQHAAATHGGAK--AAMVEALKLVQEAEGWVSDAHLKEAADVLGVTPAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q   SPVG    + +C    C L G + + +   +K+         DG  + 
Sbjct: 59  DALATFYSQIFRSPVGD-TVILLCDGLSCYLCGGDAVRDAVMSKLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
             + C G C  AP+ ++G  +     LTP+ L+ +I   S G
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALIGGVSVG 159


>gi|116749389|ref|YP_846076.1| NADH dehydrogenase subunit E [Syntrophobacter fumaroxidans MPOB]
 gi|116698453|gb|ABK17641.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 163

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +    +     R Q+  I ++   Q+  G+++  A+E  A IL M  + + E+A
Sbjct: 4   EEMRSALARKAASAESPREQA--IDVMFELQDHYGYMTDEAMEEAAGILGMTTLELEELA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY     SPVG R  + VC +  C + G +++I+    ++       + DG  +   V 
Sbjct: 62  TFYDHIYRSPVG-RYVIHVCDSAVCWMEGYQRIIDYLCQRLKLTVGGTSPDGLFTLLPVC 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C G C  AP +MI ++ Y  LT E+++ I+D  
Sbjct: 121 CIGYCDRAPAMMINRNVYGRLTREKIDRILDRL 153


>gi|86747852|ref|YP_484348.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           HaA2]
 gi|86570880|gb|ABD05437.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 156

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
              E+I+    +  +   + +L   QE  G V  AA  +VA  L+++   V  + TFY  
Sbjct: 10  RAAEIIA--GLTHKEGPTLVILHALQEAFGHVPAAAEPMVAQALNLSRAEVHGVLTFYPD 67

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+ +P G R  +++C    C   G + L      ++        +DG ++ E   C G C
Sbjct: 68  FRRTPPG-RHVLKLCRAEACQAAGGDALAARAETRLGVTFGATTADGAVTLEPTYCLGLC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP  M+ +     L   +L+ ++
Sbjct: 127 ATAPAAMLNERVIGRLDAGKLDALL 151


>gi|326572770|gb|EGE22756.1| NADH dehydrogenase subunit E [Moraxella catarrhalis BC7]
          Length = 169

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYETLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|171914656|ref|ZP_02930126.1| NADH dehydrogenase (ubiquinone), E chain [Verrucomicrobium spinosum
           DSM 4136]
          Length = 166

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
                 ++EVI+ YP S+ +SAV+PLL   Q +  +++  A+  VA  L +  I+VLE+ 
Sbjct: 7   AALEAKIDEVITHYPVSK-RSAVLPLLHLMQHEYRYITDDAVNWVAAKLGLQPIQVLEVV 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN-----KIHQKPLH---RNSDG 131
           TFY  F+ S  G + H++VC T  C + G  +L+E         + H    H    ++DG
Sbjct: 66  TFYPGFRQSAPG-KFHIRVCRTLSCAMAGSYELMESLCKAADIDRSHVDHHHPIAVSADG 124

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             S E  EC  +C   P+ M+  D +E + P+   E++  + 
Sbjct: 125 KYSIEFAECLASCGFGPVCMVEDDFHESVKPQAAAELLKQYQ 166


>gi|51246060|ref|YP_065944.1| bidirectional hydrogenase complex protein HoxE [Desulfotalea
           psychrophila LSv54]
 gi|50877097|emb|CAG36937.1| probable NADH dehydrogenase (ubiquinone) I, chain E [Desulfotalea
           psychrophila LSv54]
          Length = 194

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 1/133 (0%)

Query: 35  PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA 94
                 A+I  L   Q   G++ R A+E VA+ L +   +V  +ATFY  F L P G   
Sbjct: 51  NGNRPEALIETLHTVQNTFGFIDRDAMEYVASGLHVPLSQVYSVATFYHYFTLKPPGEHT 110

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  T C + G   L+E   N +   P   + DG +S     C G+C  AP  +   
Sbjct: 111 CV-VCTGTACYVSGSSALLETIHNTVGIDPGETSQDGKVSLLTTRCLGSCGLAPAAVFDG 169

Query: 155 DTYEDLTPERLEE 167
                L    +EE
Sbjct: 170 QVAGKLQSATIEE 182


>gi|332285352|ref|YP_004417263.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
 gi|330429305|gb|AEC20639.1| formate dehydrogenase subunit gamma [Pusillimonas sp. T7-7]
          Length = 168

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 14  SSFSFSEESAIWVN-EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           + F+ S E+   V  + + RY        ++P+L   Q   G +   A+ V+A  L  + 
Sbjct: 8   NEFNPSNETVQQVALQALERYEG--QPGNLLPILHAIQHALGCIPALAVPVLAKALQRSR 65

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             +  + +FY  F+  P G    ++VC    C   G   L E  R ++        ++G 
Sbjct: 66  AEIQGVISFYPHFREKPAGA-VMLEVCRAESCQAMGGNALAEHARQQLGCNFDDTTANGA 124

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           ++ + V C G C  +P VMI    +  +TPE+L+ ++ A
Sbjct: 125 VTLQAVYCLGLCAQSPAVMINGQPHARMTPEKLDRLLQA 163


>gi|188584098|ref|YP_001927543.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           populi BJ001]
 gi|179347596|gb|ACB83008.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           populi BJ001]
          Length = 157

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A +P+L   QE  G+V   A+ ++A+ L+++   V    TFY  F+  P   R HV++
Sbjct: 23  EGATLPILHALQETFGYVDAQAVPMIADALNLSRAEVHGCLTFYHDFRREPPAGRHHVKL 82

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C   G ++L     +++       ++DG ++ E V C G C N P  ++  +   
Sbjct: 83  CRAEACQAMGSDRLHGEILSRMGCDWHGTSADG-VTVEPVYCLGLCANGPAALVDDEPLA 141

Query: 159 DLTPERLEEIIDAFST 174
            L+ E L+  +     
Sbjct: 142 RLSAESLDAALKEARA 157


>gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 565

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE    +  ++S+Y   R  ++++P+L     + G +   A++ +A ++D+    V  +A
Sbjct: 7   EELKEKIALLVSKYGNDR--ASILPVLEDISREYGEIDLYAMQTLAFLVDIHPSEVFGVA 64

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY   +      +  +++C T  C ++  +++ +   N++  +     SDG  S E   
Sbjct: 65  TFYNFLKSGKKHGKYVIRLCRTISCHMKEKDRIAKQLNNELEIEFGEITSDGLFSLEYCN 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           C G C   P ++I       + P  +  II +   G
Sbjct: 125 CLGMCDQGPAMLINDILISKVKPSDIPLIIQSCRRG 160


>gi|212696953|ref|ZP_03305081.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676041|gb|EEB35648.1| hypothetical protein ANHYDRO_01516 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 167

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E   +++E I +      + AV+P+L + Q    ++    ++++A  L ++   +  +A
Sbjct: 13  DEFCEFLDENIGK------KGAVMPVLQKCQNLFSYIPEPIVDLMALKLGVSSSEIYGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L P G    + VC  T C ++G +K+++   +++  +      DG +S  E  
Sbjct: 67  TFYSQFSLKPKGE-HEICVCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEAR 125

Query: 140 CQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFSTGQGD 178
           C G C  AP+V I  +    +L+   + +II      + D
Sbjct: 126 CIGQCGIAPVVSIDGNLDIGNLSSADVHKII--LKAKEID 163


>gi|326565197|gb|EGE15384.1| NADH dehydrogenase subunit E [Moraxella catarrhalis 103P14B1]
 gi|326574010|gb|EGE23959.1| NADH dehydrogenase subunit E [Moraxella catarrhalis CO72]
          Length = 169

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  I  YP  R  +AV+  L   Q++ GWV+ A +  +AN+L ++   V  
Sbjct: 17  LTPQEIDGIHHHIHHYPQPR--AAVLDALKLVQKRNGWVNDAQVAAIANMLGVSVADVEG 74

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +ATF+ +    PVG R  + VC +  C L G E L+   + ++  +     +DG  +   
Sbjct: 75  VATFFNRIYRLPVG-RHVILVCDSIACYLTGYEMLLAEFKAQLGIEFGQTTADGRFTLLP 133

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + C G C     V+I +DTY  + P  +  +++ +
Sbjct: 134 ICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168


>gi|197116577|ref|YP_002137004.1| NADH dehydrogenase subunit E [Geobacter bemidjiensis Bem]
 gi|197085937|gb|ACH37208.1| NADH dehydrogenase I, E subunit [Geobacter bemidjiensis Bem]
          Length = 156

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 26  VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++E + +    R   A+ P      ++   Q   GW++  A+   A++L ++ ++V E+A
Sbjct: 2   ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAASLLGLSPLQVEELA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY      PVG +  + VC +  C    C+ +IE  + ++  +     +DG  +     
Sbjct: 62  TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C ++P + +G   Y  LTP  ++EI++ 
Sbjct: 121 CMGRCGDSPAMSVGGTPYGHLTPHLVDEILEK 152


>gi|269119250|ref|YP_003307427.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613128|gb|ACZ07496.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 158

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 1/136 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            + ++I +L +AQ   G++ R   E VA  L+ +   V  + +FY+ F + P G  A V 
Sbjct: 24  KKGSLISVLHKAQGIFGYLPREIQEYVAEKLNESLANVYGVVSFYSFFTMVPKGEHA-VS 82

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C +RG +K++   + ++  K    + DG  S + + C GAC  AP+V++G+  Y
Sbjct: 83  VCMGTACYVRGADKVLGEFQKELGIKSGETSLDGKFSIDALRCVGACGIAPVVLVGEKVY 142

Query: 158 EDLTPERLEEIIDAFS 173
           + +  + +++II+ + 
Sbjct: 143 KKVEVKEVKKIINEYK 158


>gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 626

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            V ++  R+   + +  ++ +L   Q++   ++ A ++ +A    +  I V  +A+FY+ 
Sbjct: 25  AVADICERFGNDKHR--MLDILREVQDRFQCIAPATMDQIAEETGLTRIEVEGVASFYSF 82

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
             L P G R  +++C        G E +     + +  K    ++DG +S E   C G C
Sbjct: 83  LSLQPKG-RITIRLCDDIVDRYAGLEAVTAAFEDALGIKIGETSADGAVSLEYTPCIGMC 141

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APAGGLTSLLDN 203
             AP  M+      +LT +   E+ +A   G+          DR ++ +P      ++DN
Sbjct: 142 DQAPAAMVNDIVLTNLTAQSAREVAEAIIAGKRPEDLV---SDRFATLSPHDRAVRMVDN 198

Query: 204 NSKKRGK 210
           N +  G 
Sbjct: 199 NIRHAGA 205


>gi|220920303|ref|YP_002495604.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           nodulans ORS 2060]
 gi|219944909|gb|ACL55301.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           nodulans ORS 2060]
          Length = 157

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
                +I+ +  +  + A +P+L   QE  G+V   AI ++A+ L+++   V    TFY 
Sbjct: 10  ARAARIIAEH--THLEGATLPILHALQETFGYVDNEAIPLIADALNLSKAEVHGCITFYH 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+  P G R  V++C    C   G + L      ++         DG ++ E V C G 
Sbjct: 68  DFRAKPAG-RHVVKLCRAEACQAVGADALHAEVLRRLEVDWHGTTRDGAVTVEPVFCLGL 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C   P  +I  +    L  + L+  +   + 
Sbjct: 127 CACGPAALIDGEPVARLDADGLQAALTEVAA 157


>gi|158340817|ref|YP_001521985.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
           subunit, chain E [Acaryochloris marina MBIC11017]
 gi|158311058|gb|ABW32671.1| proton-translocating NAD(P)H-quinone oxidoreductase, 24 kDa
           subunit, chain E [Acaryochloris marina MBIC11017]
          Length = 177

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++    +   + R+      +++I +L +AQE  G++ R  +  +A+ L +   +V  +A
Sbjct: 18  DQRFRVLEATMKRH--QYQPNSLIEVLHKAQELFGYLERDILLHIAHSLKLPPSQVYGVA 75

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F L+P G R    VC  T C ++G   L+       H +      DG LS     
Sbjct: 76  TFYHFFSLTPSG-RHTCVVCMGTACFVKGAASLLSTVEQIAHIQAGETTQDGGLSLSTAR 134

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
           C GAC +AP V++        T E L +
Sbjct: 135 CLGACGSAPAVVLDGQVVGYQTSENLGQ 162


>gi|330501360|ref|YP_004378229.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina NK-01]
 gi|328915646|gb|AEB56477.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina NK-01]
          Length = 164

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P  F+  E+ A    EV++ +       A++P+L   Q++ G V    + ++A  L ++ 
Sbjct: 5   PQRFA-PEQCAAVAREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSR 61

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  + +FY  F+ +P G R  +++C    C   G + L     +K+         DG+
Sbjct: 62  AEVHGVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGS 120

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           LS+E V C G C  AP VM+  + +  +  E +  ++  
Sbjct: 121 LSFEPVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159


>gi|316935782|ref|YP_004110764.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
 gi|315603496|gb|ADU46031.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Rhodopseudomonas
           palustris DX-1]
          Length = 162

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 5/162 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S      +    + +  ++  +A++  L   QE EGWVS A ++  A++L +    +
Sbjct: 1   MSLSPALKTAIQHAAATHGGAK--AAMVEALKLVQEAEGWVSDAHLKEAADVLGVTAAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q   SPVG    + +C    C L G + + +    K+         DG  + 
Sbjct: 59  DALATFYSQIFRSPVGD-TVILLCDGLSCYLCGGDAVRDAVMEKLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
             + C G C  AP+ ++G  +     LTP+ L+ +I   + G
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTPDDLDALIGGAAVG 159


>gi|330809408|ref|YP_004353870.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377516|gb|AEA68866.1| formate dehydrogenase, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 160

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ V++R        A++P+L   Q   G+V  +A+  +A+ L+++   V  + +FY  F
Sbjct: 11  IHSVLAR--EKDTPGALLPILHAIQAGCGYVPDSAVPEIAHALNLSQAEVRGVISFYHDF 68

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +++C    C   G E L    R ++       ++DG++S   V C GACV
Sbjct: 69  RTTPP-ARHTLRLCRAESCKSMGAETLAAQLREQLALDDHGTSADGSISLRPVYCLGACV 127

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P + +  + +  +TPERL ++++ 
Sbjct: 128 CSPALELDGELHARITPERLRQLVND 153


>gi|325845920|ref|ZP_08169118.1| putative bidirectional hydrogenase complex protein HoxE
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481826|gb|EGC84858.1| putative bidirectional hydrogenase complex protein HoxE
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 167

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           +E   +++E I +      + AV+P+L + Q    ++    ++++A  L ++   +  +A
Sbjct: 13  DEFCEFLDENIGK------KGAVMPVLQKCQNLFSYIPEPIVDLMALNLGVSSSEIYGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY+QF L P G    + VC  T C ++G +K+++   +++  +      DG +S  E  
Sbjct: 67  TFYSQFSLKPKGE-HEICVCLGTACYVKGSDKILKSLSDELGIEVGDTTEDGKISLAEAR 125

Query: 140 CQGACVNAPMVMIGKDT-YEDLTPERLEEIIDAFSTGQGD 178
           C G C  AP+V I  +    +L+   + +II      + D
Sbjct: 126 CIGQCGIAPVVSIDGNLDIGNLSSADVHKII--LKAKEID 163


>gi|227499380|ref|ZP_03929491.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
           ATCC 35098]
 gi|227218584|gb|EEI83824.1| NADH dehydrogenase (ubiquinone) subunit E [Anaerococcus tetradius
           ATCC 35098]
          Length = 163

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+P L + Q    ++    ++++A  L ++   +  +ATFY+QF L   G    + V
Sbjct: 26  KGAVMPALQKCQNLFSYIPEPVVDLMALKLGVSSSEIYGVATFYSQFSLKAKGE-HEICV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY- 157
           C  T C + G +++++   +K+  +    + DG ++  E  C G C  +P+VMI  D + 
Sbjct: 85  CLGTACYVNGADRILKSLSDKLGVEVGDTSQDGKITLSEARCVGECGKSPVVMIDGDEFR 144

Query: 158 EDLTPERLEEIIDAFST 174
           E++    +++II+    
Sbjct: 145 ENVELSDIDDIINKLRK 161


>gi|56751244|ref|YP_171945.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
           elongatus PCC 6301]
 gi|81299089|ref|YP_399297.1| bidirectional hydrogenase complex protein HoxE [Synechococcus
           elongatus PCC 7942]
 gi|3947770|emb|CAA73872.1| hoxE [Synechococcus elongatus PCC 6301]
 gi|56686203|dbj|BAD79425.1| NADH dehydrogenase I chain E [Synechococcus elongatus PCC 6301]
 gi|81167970|gb|ABB56310.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like [Synechococcus
           elongatus PCC 7942]
          Length = 165

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A+I +L  AQ   G++ R  ++ VA  L +   +V  +A+FY  FQL+P G R    
Sbjct: 27  QADALIEILHEAQSLYGYLDRELLQWVAEQLALPRSKVYGVASFYHLFQLNPSG-RHRCH 85

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC  T C ++G + +++    ++  +     +DG++S   V C GAC  AP+V+   D  
Sbjct: 86  VCLGTACYVKGSQAILDCLIAELGIREGETTNDGSVSLGTVRCVGACGIAPVVVYDGDIQ 145

Query: 158 EDLTPE 163
                E
Sbjct: 146 GRQESE 151


>gi|239815992|ref|YP_002944902.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus S110]
 gi|239802569|gb|ACS19636.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Variovorax
           paradoxus S110]
          Length = 154

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +      + + +        ++P L   Q+  G V   A+ ++A   +++   V  + ++
Sbjct: 3   NLGIAASIAAAHKD--RPGGLLPALHGIQDALGHVPPDAVPLIAEQFNLSRAEVHGVVSY 60

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+ +P G R  VQVC    C   G + L+     ++       ++DG  S E V C 
Sbjct: 61  YHHFRSAPAG-RLLVQVCRAEACKAMGADALLAHAEQRLGCGVHGTSADGQCSLEPVFCL 119

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEI 168
           G C ++P + +  + +  +TP   ++I
Sbjct: 120 GLCASSPAIAVNGEVHARITPALFDDI 146


>gi|270307814|ref|YP_003329872.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
           VS]
 gi|270153706|gb|ACZ61544.1| HymA and NuoE type iron-sulfur cluster protein [Dehalococcoides sp.
           VS]
          Length = 154

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+S Y   R    +IP+L+  Q +  ++SR  ++ VA  + +    V  IATFY+QF+L 
Sbjct: 12  VLSLYEAKRE--NLIPILLAFQRKFSYLSRDMMQSVAVYIGVPESSVYNIATFYSQFRLE 69

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G E+L+     ++  K      D  +S + + C G C  AP
Sbjct: 70  PPGI-HKVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    Y  L    L  I+
Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149


>gi|297203643|ref|ZP_06921040.1| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
 gi|297148464|gb|EDY61257.2| formate dehydrogenase [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            + A++P+L   Q + G V + A+ V+A  L+++   V  + TFY  F+  P G R  V+
Sbjct: 90  ERGALLPVLHAVQAELGHVPQEAVPVLAEELNLSRADVHGVVTFYHDFRREPAG-RTTVR 148

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   G ++L+   R           +DG+++ E+V C G C   P V      Y
Sbjct: 149 ICRAEACQALGADQLVSYARES-GLPLGETAADGSVTVEQVFCLGNCALGPSVEANGRLY 207

Query: 158 EDLTPERLEEIIDA 171
             + P RL  I++ 
Sbjct: 208 GRVGPARLGSILNG 221


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V+ +I R   SR    +IPLL   Q++  ++   A+  V    ++   +++ ++TFY+
Sbjct: 3   ARVDAIIDRIGTSRRD--IIPLLQALQDEFSYLPSDALLRVYERTEIDRAQLISVSTFYS 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH-RNSDGTLSWEEVECQG 142
           QF+  P G +  ++VC  T C ++G   + +  R ++  +      +D   S E++ C G
Sbjct: 61  QFRHVPYG-KHIIKVCTGTACHVKGANNVYDAFRRELKMEEDRITTADQEYSIEKIACLG 119

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C  AP+V I +  Y  + P R+ E++D F 
Sbjct: 120 CCALAPVVQIDEKIYGHVQPGRVNEVLDEFR 150



 Score = 42.0 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 30/141 (21%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDM----AYIRVLEIATFYTQFQLSPVGTRAHV 96
           A+ P++   ++  G V    +  V +   +            AT         VG    +
Sbjct: 122 ALAPVVQIDEKIYGHVQPGRVNEVLDEFRIYNQEHEREEEGNAT------RQIVGE---I 172

Query: 97  QVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
           ++     C   G  ++ +      +++  +         ++ + V C GAC   P++ + 
Sbjct: 173 RLGMENCCQASGTSEIYQAVIKASDELGIE---------VNIKPVSCVGACNQVPLIDVA 223

Query: 154 K-----DTYEDLTPERLEEII 169
                 + Y ++ PE ++EI+
Sbjct: 224 HPDGSIERYPNVRPEEIKEIL 244


>gi|289548716|ref|YP_003473704.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
           14484]
 gi|289182333|gb|ADC89577.1| NADH-quinone oxidoreductase, E subunit [Thermocrinis albus DSM
           14484]
          Length = 154

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             +E    + + +  +P  R + A++  L   Q+  G +   A+E VA IL +    V  
Sbjct: 2   LPQELLEKLRQHVQYFP--RREQAILLCLHEVQDYYGHIPNFALEEVAKILHVPLNHVES 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +  FY  F       +  ++VC +  C     ++L+   +  +         DG      
Sbjct: 60  VVAFYDMFDRG-EPAKHRIRVCVSVVCHFMKKDQLLNALKKHLGIDFWQVTKDGRFKLIP 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           V+C GAC  AP+ MI +DTY+    E+L EI+  +
Sbjct: 119 VQCLGACSCAPVFMIDEDTYQFEGEEKLHEILSRY 153


>gi|85707198|ref|ZP_01038284.1| ATP synthase subunit E [Roseovarius sp. 217]
 gi|85668252|gb|EAQ23127.1| ATP synthase subunit E [Roseovarius sp. 217]
          Length = 154

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 64/146 (43%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++ +     +  ++P+L   Q+  G +  AA   +A  L+++   +  + +FY  F
Sbjct: 9   IQAILTEH--LHLEGPLLPILHAMQDAFGHIPEAAHRPIAEALNISRAELHGVISFYHDF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P G R  +++C    C   G   L +    K+        ++G ++ E V C G C 
Sbjct: 67  RANPAG-RHVLKICRAEACQAVGGTALADATLTKLGLDWHGTTANGAVTVEPVYCLGLCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            AP  M+       +   R++ ++  
Sbjct: 126 CAPAAMLDDRVVGRVDAARMDTLLAE 151


>gi|146305427|ref|YP_001185892.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Pseudomonas
           mendocina ymp]
 gi|145573628|gb|ABP83160.1| formate dehydrogenase gamma subunit [Pseudomonas mendocina ymp]
          Length = 164

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 18  FSEESAIWV-NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           F+ E    V  EV++ +       A++P+L   Q++ G V    + ++A  L ++   V 
Sbjct: 8   FAPEQCEAVTREVLAAH--RGQPGALLPILHDIQDRLGAVPPELLPLIAEDLCLSRAEVH 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + +FY  F+ +P G R  +++C    C   G + L     +K+         DG+LS+E
Sbjct: 66  GVVSFYHDFRATPPG-RQVLKLCQAEACQSMGVKALTAELESKLGLPLGETREDGSLSFE 124

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            V C G C  AP VM+  + +  +  E +  ++  
Sbjct: 125 PVYCLGNCACAPSVMLNGELHGRVDAEEVLALLAE 159


>gi|195952595|ref|YP_002120885.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932207|gb|ACG56907.1| NADH-quinone oxidoreductase, E subunit [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 154

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++E    +   I +Y  S+ ++ ++  L   QE  G +   A+E ++ ILD+    +  
Sbjct: 2   LTQEIKEAIEGHI-KYFGSKEEAMLLS-LHSIQEHLGHIPEEALEELSEILDIPLHHIKG 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +  FY  F       +  + VC +  C L    K+    +  +  +P     DG     E
Sbjct: 60  VVAFYEMFDTGEK-AKHRIYVCNSIVCYLLKSHKVFNAVKELLGIEPGQVTRDGMFKLVE 118

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           V+C GAC  AP+ M+  DTY   + E+L EI+  +S
Sbjct: 119 VQCLGACSEAPVFMVDNDTYRYESKEKLHEILAKYS 154


>gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3')
           subunits of formate dehydrogenase and to nuoE and nuoF
           of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch
           sediment']
          Length = 710

 Score =  164 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +      +  +I+++P  R ++ ++P L  AQ  EGW+S  ++  VA  L +    V  
Sbjct: 1   MTPPEEHTLRTLIAQFP--RERTWLLPALQTAQRAEGWLSPESLATVALHLRVPQSEVYG 58

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +A  Y +F+L+  G+R  V+VC    C ++G   L+   +N++       + D +++ EE
Sbjct: 59  VAGHYPEFRLTKPGSR-LVRVCTGVSCRIQGGLTLLHALQNRLGLTVGETSQDHSVTLEE 117

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            +C   C  AP+V +    Y  L  +RL+ I +
Sbjct: 118 ADCLFRCAMAPVVEVDHRCYGRLDTDRLDSIFN 150


>gi|303248402|ref|ZP_07334662.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302490200|gb|EFL50118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 165

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            +  +     +  +I++      + A + ++   Q   G++   A+   + +L M  + +
Sbjct: 1   MALPDALVADLKRMIAQ--AEHPREAAVDVMYALQHHYGYLCDEAVHYASKLLGMTTLEL 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY      PVG    + VC +  C +   + + +     +   P     DG  + 
Sbjct: 59  ESLATFYDYLYRRPVG-HYVIHVCDSVVCWMFHQDSIFDYLCRTLGVPPGGTTEDGMFTV 117

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
               C G C NAP ++I    Y  LTPER++ ++        + +R
Sbjct: 118 LPSACIGNCHNAPTMLINGRFYNKLTPERIDAVLRELRETTEEPVR 163


>gi|73748288|ref|YP_307527.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|147669068|ref|YP_001213886.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Dehalococcoides
           sp. BAV1]
 gi|73660004|emb|CAI82611.1| putative [Fe] hydrogenase, HymA subunit [Dehalococcoides sp. CBDB1]
 gi|146270016|gb|ABQ17008.1| NADH dehydrogenase subunit E [Dehalococcoides sp. BAV1]
          Length = 154

 Score =  164 bits (416), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+S Y   +    +IP+L+  Q    ++SR  ++ VA  + +    V  IATFY+QF+L 
Sbjct: 12  VLSLYEAKKE--NLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLE 69

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G E+L+     ++  K      D  +S + + C G C  AP
Sbjct: 70  PPGI-HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTLDNEISLDTINCAGICGLAP 128

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    Y  L    L  I+
Sbjct: 129 TLEVDGKLYTRLNGSSLNRIL 149


>gi|57234744|ref|YP_181190.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225192|gb|AAW40249.1| [Fe] hydrogenase, HymA subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 154

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+S Y   +    +IP+L+  Q +  ++SR  ++ V+  + +    V  IATFY+QF+L 
Sbjct: 12  VLSLYEAKKE--NLIPILLAFQRKFSYLSRDMMQSVSVYVGVPESSVYNIATFYSQFRLE 69

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G E+L+     ++  K      D  +S + + C G C  AP
Sbjct: 70  PPGI-HKVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTPDNEISLDTINCAGICGLAP 128

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    Y  L    L  I+
Sbjct: 129 TLEVDGKLYTRLDGSSLNRIL 149


>gi|296448074|ref|ZP_06889977.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
           trichosporium OB3b]
 gi|296254431|gb|EFH01555.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylosinus
           trichosporium OB3b]
          Length = 184

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +     E+I  +     +   +P+L   QE+ G+V  AA+  +A  L+++   +  + +F
Sbjct: 34  NEARAQEIIDAHLG--LEGPALPILHAIQEEFGYVPEAAVPQIAQSLNISRAEMHGVVSF 91

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+ +P G R  +++C    C   G EK+ +    ++  +     +DG+L+ E V C 
Sbjct: 92  YHDFRRAPAG-RHVLKLCRAESCQSMGSEKIAKDFLERVKLEWGGTANDGSLTVEAVYCL 150

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C ++P  +   +    +  E L+E+     
Sbjct: 151 GLCAHSPGALYDNEPIGRVDAEMLDELAAEAR 182


>gi|77463675|ref|YP_353179.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides 2.4.1]
 gi|126462507|ref|YP_001043621.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17029]
 gi|221639518|ref|YP_002525780.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides KD131]
 gi|77388093|gb|ABA79278.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104171|gb|ABN76849.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160299|gb|ACM01279.1| NADH dehydrogenase (Ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides KD131]
          Length = 157

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S +    +      +   R  +A++  L   Q + GWVS   +   A  L +    +
Sbjct: 1   MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +A+FY+     PVG R  + +C    C L G E++ E  + ++        +DG  + 
Sbjct: 59  EALASFYSLIFRHPVG-RTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117

Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
             V C G C  AP  ++G+D      L+P  +  +++ 
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155


>gi|332558531|ref|ZP_08412853.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
 gi|332276243|gb|EGJ21558.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides WS8N]
          Length = 157

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S +    +      +   R  +A++  L   Q + GWVS   +   A  L +    +
Sbjct: 1   MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDPHLAEAAATLGVHRAEM 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +A+FY+     PVG +  + +C    C L G E++ E  + ++        +DG  + 
Sbjct: 59  EALASFYSLIFRHPVG-KTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTADGRYTL 117

Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
             V C G C  AP  ++G+D      L+P  +  +++ 
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRQLVGPLSPAGVAALLED 155


>gi|327243023|gb|AEA41130.1| putative bifurcating [FeFe] hydrogenase subunit 1 [Clostridium
           butyricum]
          Length = 122

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +I ++   Q++  ++    +  +A  L ++  ++  +ATFY  F L P G +  +++C  
Sbjct: 1   LIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFYENFSLKPKG-KYVIKICNG 59

Query: 102 TPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
           T C +R    ++E  RN +   +      D   + E V C GAC  AP+  +  + Y ++
Sbjct: 60  TACHVRKSIPILEEFRNILGLCEEKSTTDDMMFTVETVSCLGACGLAPVCTVNDEVYPNM 119

Query: 161 TPE 163
           T  
Sbjct: 120 TKA 122


>gi|91975105|ref|YP_567764.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisB5]
 gi|91681561|gb|ABE37863.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 156

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
              E+I+    +  +   + +L   QE  G+V  AA  +VA  L+++   +  + TFY  
Sbjct: 10  RAAEIIA--GLTHKEGPTLVILHALQEAFGYVPEAAEPMVAQALNLSRAEIHGVVTFYPD 67

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F+  P G R  +++C    C   G + L      ++       ++DG +S E V C G C
Sbjct: 68  FRREPPG-RHVLKLCRAEACQAAGGDALAAQAETRLGVTFGATSADGAVSLEPVYCLGLC 126

Query: 145 VNAPMVMIGKDTYEDLTPERLEEII 169
             AP  M+       L   RL+ ++
Sbjct: 127 ATAPSAMLDDRVIGRLDTHRLDALM 151


>gi|289432337|ref|YP_003462210.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
 gi|288946057|gb|ADC73754.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Dehalococcoides sp.
           GT]
          Length = 154

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 29  VISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLS 88
           V+S Y   +    +IP+L+  Q    ++SR  ++ VA  + +    V  IATFY+QF+L 
Sbjct: 12  VLSLYEAKKE--NLIPILLAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIATFYSQFRLE 69

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G    V VC  T C + G E+L+     ++  K      D  +S + + C G C  AP
Sbjct: 70  PPGI-HRVHVCRGTACHVMGAERLLRNIEKRLGIKAGETTIDNGISLDTINCAGICGLAP 128

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            + +    Y  L    L  I+
Sbjct: 129 TLEVDGKLYTRLNGSSLNRIL 149


>gi|89055051|ref|YP_510502.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Jannaschia sp.
           CCS1]
 gi|88864600|gb|ABD55477.1| formate dehydrogenase gamma subunit [Jannaschia sp. CCS1]
          Length = 167

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++  + V+ +I +      +  ++P+L   Q   G+V   A  ++A  L++    +  + 
Sbjct: 11  DDLLVEVDAIIQK--NIALEGPLLPILHDVQAAFGYVPDDARALIATALNITEAELHGVI 68

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P G R  +++C    C   G   + +    ++        +DG L+ E + 
Sbjct: 69  SFYHDFRRKPAGKR-VLKICRAEACQAMGANAMSDAVLAQLGLGWGETAADGGLTVEPIY 127

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEE 167
           C G C   P  MI       +T + L  
Sbjct: 128 CLGLCACGPAAMIDGKLKGRVTADSLIA 155


>gi|86748475|ref|YP_484971.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris HaA2]
 gi|86571503|gb|ABD06060.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 157

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S      + +  + +   +  +A++  L   QE EGWVS A ++  A  L +    +
Sbjct: 1   MSLSPAIRTAIAQAAAHHGGPK--AAMLEALKLVQEAEGWVSDAHLKEAAEALGVTTAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q   SPVG    + +C    C L G + + +   +++         DG  + 
Sbjct: 59  DSLATFYSQIFRSPVGD-TVILLCDGLSCFLCGGDAVRDAVMSRLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEII 169
             + C G C  AP+ ++G  +     LT + L+ +I
Sbjct: 118 INICCVGGCDLAPVALVGPERKLVGPLTADDLDALI 153


>gi|116624104|ref|YP_826260.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227266|gb|ABJ85975.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 170

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            ++    V     R+   R   A+I  L   QE  G++  A +  VA++L +   RV   
Sbjct: 13  DDKRWKLVEATARRH--GREPHALIETLHTVQECFGYLDEAGLRFVASVLRVPLSRVYGA 70

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           ATFY  F L P G R    VC  T C ++G   L+     +   KP    +DG LS    
Sbjct: 71  ATFYHFFTLKPKG-RHTCVVCTGTACYIKGAPALLGAIEKQYGIKPGETTADGELSVLTA 129

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G+C  AP  ++ +     + P  +   I+ 
Sbjct: 130 RCLGSCGLAPAAVMDQAVLGKIGPAEMLARIEK 162


>gi|320102224|ref|YP_004177815.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
 gi|319749506|gb|ADV61266.1| NADH dehydrogenase subunit E [Isosphaera pallida ATCC 43644]
          Length = 183

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            S E    +  ++  YP    Q+  +P L    E    V R A+  +A +LD+   +V +
Sbjct: 22  LSAELRDRITALLPNYPS--KQAVTLPALHLVHETFRCVPRQAMVEIAELLDLTPAQVHD 79

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
             +FY  F  +P+G    V +C +  C  RG ++L+     K+   P    SDG L+ E 
Sbjct: 80  TMSFYGFFHQAPIGD-VRVWICRSISCAARGGDELLTKTCAKLGIHPGETTSDGKLTVEY 138

Query: 138 VECQGACVNAPMVMIGK-DTYEDLTPE-RLEEIIDAFSTGQGDT 179
            EC G C +AP  +      +  L  E  LE ++DA   G    
Sbjct: 139 AECLGICDHAPAALADDGRIFGPLEDESSLEAMLDAVRQGPAPV 182


>gi|90426118|ref|YP_534488.1| formate dehydrogenase subunit gamma [Rhodopseudomonas palustris
           BisB18]
 gi|90108132|gb|ABD90169.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 158

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
               E+I+       + A + +L   QE  G+V + AI ++A  L+++   V  + TFY 
Sbjct: 11  ERAAEIIAELKS--HEGATLVILHALQEAFGYVPQDAIPMIALALNLSRAEVHGVFTFYH 68

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+  P G R  +++C    C   G + L       +         DG +S E V C G 
Sbjct: 69  DFRKVPAG-RHVLKLCLAEACQSAGGDALAARAETTLGMAVGETRGDGVVSLEPVYCLGL 127

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C  AP  M+       L   RL+ ++  
Sbjct: 128 CATAPSAMLDGRLIGRLDATRLDALLAE 155


>gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 561

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 20/210 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V  +++  P  R    +I  L   Q+  G +S A +  +A  L ++ 
Sbjct: 21  PKGRQLEDQAWEDVKVLLASRP--RRSDLLIEFLHLIQDAYGHLSAAHLRALAEELRLSM 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +   G        ++VC +  C L G + L       +        
Sbjct: 79  AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEGSLDASE---- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G    +  TPE++E  I A       T    P  + 
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVEAAIAA-----NHTHADIPAYED 185

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKKDDKI 217
            ++   AGG TSL +  +     + +D  +
Sbjct: 186 FAAYEAAGGYTSLKELRANGDWAQVQDKVL 215


>gi|222054363|ref|YP_002536725.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221563652|gb|ACM19624.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 169

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + A + ++   Q   GW++  A+   A +L ++ ++V E+ATFY      PVG +  + V
Sbjct: 21  REAAVDVMKELQLHYGWLTDEAVVEAAGLLGLSPLQVEELATFYEMIYRQPVG-KQVIHV 79

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C +  C   G E ++      +  KP    +DG  +     C G C + P +MIG+  Y 
Sbjct: 80  CDSISCWAMGGETMMAHLAGLLGIKPGETTADGQFTLLPCACLGNCGDGPTMMIGEKIYG 139

Query: 159 DLTPERLEEIIDAFSTGQGDTI 180
            LT   L E+I  F     +T 
Sbjct: 140 KLTVPLLTEMIGWFRGAAIETP 161


>gi|307822804|ref|ZP_07653035.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
 gi|307736408|gb|EFO07254.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacter
           tundripaludum SV96]
          Length = 159

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            +P     S      +N  +S Y      S  I  L   Q+   WVS   +  VA +LD+
Sbjct: 2   NEPIFEGLSLAEIREINAEMSHYENKTAVS--IEALKIVQKHRRWVSDQCLIAVAELLDI 59

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
           +  ++  +ATFY      PVG +  +  C +  C + G +++ E     ++ +    ++D
Sbjct: 60  SPAQLEGVATFYNLIYRQPVG-KTVIHYCNSVTCWMLGSDQVGESLCRHLNVELGEMSAD 118

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           G  +   + C GAC +AP+VM+G +   D+T + + EI+
Sbjct: 119 GEYTVLPIVCLGACDHAPVVMVGNELKFDITEDAVNEIL 157


>gi|149203816|ref|ZP_01880785.1| ATP synthase subunit E [Roseovarius sp. TM1035]
 gi|149142933|gb|EDM30975.1| ATP synthase subunit E [Roseovarius sp. TM1035]
          Length = 154

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 3/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  +++ +     +  ++P+L   Q   G++  AA   +A  L+++   +  + +FY  F
Sbjct: 9   ITSILAAHRD--LEGPLLPILHAMQAAFGYIPEAAHRPIAEALNISRAELHGVISFYHDF 66

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P G R  +++C    C   G   L E    K+        ++G ++ E V C G C 
Sbjct: 67  RANPAG-RHVLKICRAEACQAVGGAVLAEATLAKLGLAWHGTTANGAVTVEPVYCLGLCA 125

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            AP  M+       +   R++ ++  
Sbjct: 126 CAPAAMLDDRVVGRVDAARIDALLAE 151


>gi|319937312|ref|ZP_08011719.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807678|gb|EFW04271.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 163

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
             +++S  ++++VI R+   +    ++  L   Q + G++   A+E ++  LD    ++ 
Sbjct: 3   KLNQKSLDFIDDVIYRHKDEKGPIKLM--LHEIQNELGYIPFEAMEKMSEALDEPIAKIY 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY+QF   P G +  + VC  T C + G + ++++            + DG  S +
Sbjct: 61  GVVTFYSQFTTEPKG-KHVISVCLGTACYVNGSQTILDLLVEMTGAPVNGTSQDGVFSID 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTP--ERLEEIIDAFSTGQGDT 179
              C GAC  AP+V +    +   T   E L+ ++  +   +   
Sbjct: 120 ATRCVGACGLAPVVSVDGTVFGC-TKQLEDLKMLVLDYKKEEAPA 163


>gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
 gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
          Length = 574

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 20/210 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +     V E++   P  R +  +I  L   Q++ G +S A +  +A  L +A 
Sbjct: 34  PKGRQLEDHPWQEVQELLGAAP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEELRIAQ 91

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +   G        ++VC +  C L G ++L +   + +        
Sbjct: 92  AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKKALEDGL-------- 143

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE++E  I A      DT    PQ + 
Sbjct: 144 DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVEAAIAA-----DDTHAHVPQYET 198

Query: 189 ISSAP-AGGLTSLLDNNSKKRGKKKKDDKI 217
             +   AGG   L         +  + D +
Sbjct: 199 YDAYAKAGGYQVLARLREGGDFETVQQDLL 228


>gi|298492585|ref|YP_003722762.1| NADH dehydrogenase 24 kDa subunit ['Nostoc azollae' 0708]
 gi|298234503|gb|ADI65639.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit ['Nostoc azollae'
           0708]
          Length = 150

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++  I R+     Q  VI +L RA E  G++    +  +A+ L +    V  +ATFY  F
Sbjct: 1   MDATIKRH--QYQQDTVIEILHRASELFGYLELDLLLYIAHKLKLPPSWVYGVATFYHLF 58

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            L+P G    V VC  T C ++G + ++    N    +     S G +      C GAC 
Sbjct: 59  FLAPKGKHNCV-VCTGTACYVKGSQAILSSLENVTKIRAGETTSYGEIYLMTARCLGACG 117

Query: 146 NAPMVMIGKDTYEDLTPERLEE 167
            A  V+       + TPE + E
Sbjct: 118 IASAVVFDGAVLGNQTPESVCE 139


>gi|91975809|ref|YP_568468.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB5]
 gi|91682265|gb|ABE38567.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 157

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S      + +  + +   +  +A++  L   QE EGWVS A ++  A  L +    +
Sbjct: 1   MSLSPAIKTAIAQAAANHGGPK--AAMVEALKLVQEAEGWVSDAHLKEAAQALGVTTAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+Q    PVG    + +C    C L G + + +   +++         DG  + 
Sbjct: 59  ESLATFYSQIFRRPVGD-TVILLCDGLSCYLCGGDAVRDAIMSRLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMIG--KDTYEDLTPERLEEII 169
             + C G C  AP+ ++G  +     LT + L+ +I
Sbjct: 118 INICCVGGCDRAPVALVGPERKLVGPLTADDLDALI 153


>gi|77919442|ref|YP_357257.1| NADP-reducing hydrogenase subunit A [Pelobacter carbinolicus DSM
           2380]
 gi|77545525|gb|ABA89087.1| NADH dehydrogenase subunit E [Pelobacter carbinolicus DSM 2380]
          Length = 168

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 91/173 (52%), Gaps = 5/173 (2%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           MS  +  ++   P      E     +++ I   P    +  +I  L +AQ   G++    
Sbjct: 1   MSSCQETQKCGSPQ--DLPEYLFRELDDFIEALPT--KEGHLITALHKAQSLFGYLPEEI 56

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
            E VAN +++  ++V  + +FYT F + P G +  + VC  T C ++G +K+++  +N++
Sbjct: 57  QEYVANAMNVPVVQVFGVVSFYTFFTMIPKG-KHPISVCMGTACFVKGADKVVDAFKNQL 115

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +        DG  S + + C GAC  AP+V++G+  Y ++TP+++++II  F+
Sbjct: 116 NVAVSEVTEDGKFSIDCLRCVGACALAPVVLVGEKVYANVTPDQVKDIIAEFA 168


>gi|84686200|ref|ZP_01014095.1| ATP synthase subunit E [Maritimibacter alkaliphilus HTCC2654]
 gi|84665727|gb|EAQ12202.1| ATP synthase subunit E [Rhodobacterales bacterium HTCC2654]
          Length = 160

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 3/153 (1%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           S      + EVI  Y  +  +  ++P+L    E    V   A++ +A+ L++    V  +
Sbjct: 8   SAPDLGAIQEVIEAY--THLEGPLLPILHAMMEAFDHVPEDAVQPIADALNIGRAEVHGV 65

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            +FY  F+  P G R  V++C    C   G   L +    ++         +G ++ E V
Sbjct: 66  ISFYHDFRTLPAG-RHIVKICRAEACQALGANGLADAVLTRLGTSWHGTTPNGAVTIEPV 124

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C N P  MIG      L   +LE +I  
Sbjct: 125 YCLGLCANGPAAMIGDKVVGALDEAKLERVISE 157


>gi|269926645|ref|YP_003323268.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790305|gb|ACZ42446.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 174

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
            +++ SEE    VN ++  +       ++IP L + Q    ++   A  +++    +   
Sbjct: 6   DTWTGSEEDRARVNSILDEFEGQDPMESLIPALHKIQAAYRYIPEEAGHIISERWHIPET 65

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            +  + +FY+ F   P G R  + +C    C   G  +L EV ++ +         DG  
Sbjct: 66  DIFNVVSFYSDFSTEPRGKR-VLWICEGAACYFMGGPQLGEVAQSVLGIPYNETTPDGEW 124

Query: 134 SWEEVE-CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           +    + C G C  AP+V +    Y  L+PE L  +I 
Sbjct: 125 TLRRADFCFGVCHRAPLVELDHHIYGPLSPEELRALIA 162


>gi|146277731|ref|YP_001167890.1| NADH dehydrogenase subunit E [Rhodobacter sphaeroides ATCC 17025]
 gi|145555972|gb|ABP70585.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 157

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            S S +    +      +   R  +A++  L   Q + GWVS   +   A+ L +    +
Sbjct: 1   MSLSPDLLARIRAASDEHGGPR--AAMLEALKLIQHEHGWVSDGHLAEAASALGVHRAEM 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +A+FY+     PVG +  + +C    C L G E++ E  + ++         DG  + 
Sbjct: 59  EALASFYSLIFRHPVG-KTVILLCDGASCWLNGAEEVREELKRRLGIGFGETTRDGRYTL 117

Query: 136 EEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
             V C G C  AP  ++G+D      L+P  +  +++ 
Sbjct: 118 LNVACLGGCDRAPAAVVGRDRRLVGPLSPAGVAALLEE 155


>gi|27378249|ref|NP_769778.1| formate dehydrogenase subunit gamma [Bradyrhizobium japonicum USDA
           110]
 gi|27351396|dbj|BAC48403.1| NADH dehydrogenase I chain E [Bradyrhizobium japonicum USDA 110]
          Length = 162

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 28  EVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL 87
           E+I+ +  +R + A + +L   Q   G+V  AAI +VA  L+++   V  + TFY  F+ 
Sbjct: 19  EIIAEH--ARQEGATLVILHALQAAFGYVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRH 76

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P G R  +++C    C   G + L      ++     +  +D  ++ E + C G C  A
Sbjct: 77  KPAG-RHVLKLCRAEACQAAGGDALAARAEARLGVSLGNTTADDRVTLEPIYCLGLCATA 135

Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
           P  M+       L  +RL+ ++  
Sbjct: 136 PSAMLDGRLVGRLDEKRLDALVAE 159


>gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
 gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
          Length = 611

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 14/197 (7%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++A  + +  + Y     +  ++ +L + Q++   +   A+ ++A +     + V  + +
Sbjct: 4   DNATLIKQACADYDNDPRR--MMDILWQVQDKLRCIDGDAMSLIAALTGTYRVEVEGVVS 61

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F     G    +++C        G + + E   + +  +P   ++DG  S E   C
Sbjct: 62  FYAFFSDKRKGD-ITIRLCDDIVDRHAGAQAVAEAFSDALGIQPGETSADGAFSLEFTPC 120

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP------- 193
            G C  AP V+I       LTP +++ I+      +      G   D  +S P       
Sbjct: 121 IGMCDQAPAVLINDVVVTRLTPAKVKNILRTLRKTKDPQTLIGKTGDGANSHPLVQAMVR 180

Query: 194 ----AGGLTSLLDNNSK 206
                 G   L D N  
Sbjct: 181 NNIRQPGPVLLTDANPD 197


>gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
 gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
          Length = 566

 Score =  161 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P  R +  +I  L   Q+  G +S A I  +A  L    
Sbjct: 26  PKGRQLDDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDAYGHLSAAHIRALAEELRTGQ 83

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G  A     ++VC +  C L G E+L +   + +        
Sbjct: 84  AEIYEVASFYAHFDVVREGETAPPALTIRVCDSLSCELAGAEQLQKALEDGLDAS----- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  T E++E  I A      DT    P+ + 
Sbjct: 139 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPEYET 190

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213
            ++    GG  +L D  +    +  +
Sbjct: 191 FAAYEGEGGYATLKDLRANGDWEAVQ 216


>gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit
           [Cupriavidus metallidurans CH34]
          Length = 602

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 3/161 (1%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  ++ RY   R +  ++ +L   Q   G +    +  +A  L+++ + + E A+FY 
Sbjct: 3   KDIRTILERYRSDRAR--LMDILWDVQHLYGHIPDEVLPQLAAELNLSPLDIRETASFYH 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G +  + +C +    + G + + +    +   +    + +G     E  C G 
Sbjct: 61  LFHDKPSG-KHRIYLCNSVIAKMNGYQAVHDALERETGVRFGETDPNGMFGLFETPCIGL 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               P ++I K  +  L P ++ +II     G+       P
Sbjct: 120 SDQEPAMLIDKVVFTRLRPGKIADIIAQLKQGRSPAEIANP 160


>gi|84499615|ref|ZP_00997903.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
 gi|84392759|gb|EAQ04970.1| ATP synthase subunit E [Oceanicola batsensis HTCC2597]
          Length = 162

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 7/161 (4%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
            +P+     ++    ++           + A++P+L   QE  G +   A  ++   L +
Sbjct: 1   MRPAPPPTPDDIQAVIDT------ERHREGALLPILHALQEAYGHIPEGAYPLLTATLGI 54

Query: 71  AYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD 130
               +  + +FY  F+  P G R  V+VC    C   G   +     ++          D
Sbjct: 55  TRAELHGVVSFYHDFRDVPAG-RHVVKVCRAEACQSVGANAMAATLLDRFGLDWHGTTPD 113

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G ++ E V C G C   P  M+         P +L   +  
Sbjct: 114 GRVTIEPVYCLGLCACGPAAMVDGKLIGRADPAKLAAALSE 154


>gi|224825581|ref|ZP_03698686.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
           nitroferrum 2002]
 gi|224602502|gb|EEG08680.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Lutiella
           nitroferrum 2002]
          Length = 159

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 19  SEESAIW--VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +E+      +  ++  +       A++P+L   Q+  G++   A+  +A  L  +   V 
Sbjct: 3   TEQDLAHASLQAILQTH--QNQPGALLPILHDVQDTLGFIPDWAVADIAKALSQSRAEVH 60

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
            + TFY  F+ +P   +  +Q+C    C  RG  +L       +      R++D ++  E
Sbjct: 61  GVITFYHHFRTTPP-AQHTLQICQAEACQARGSRELTAHAEQVLGCSLHGRSADQSIGLE 119

Query: 137 EVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
            V C G C + P + +       +   +L+ ++      Q
Sbjct: 120 PVYCLGLCSSGPNIQLNDKMVSRVDAAKLDRLLANVKEAQ 159


>gi|225849103|ref|YP_002729267.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644487|gb|ACN99537.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 160

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++    +++ + R+P    + AVI  L     +   ++   ++ +++ L +    +  
Sbjct: 6   LTQDIKERIDKYLERFPV--KEQAVIQSLHLIYSKYRDITLEHMQELSDYLQVPLAHIEG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           I +FY  F++     R H++VC   PC + GC+KL+E+      +K    + +G    E 
Sbjct: 64  IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLLELFEKLTGEKANEESKNGRFYIET 122

Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
           VEC G+C  AP  MI  D Y+   +   +L EI+  +
Sbjct: 123 VECIGSCSVAPAFMIDDDLYDGTKINEGKLNEILSKY 159


>gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
 gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
          Length = 569

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 20/209 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 + +   V  ++   P  R    +I  L   Q++ G +S A +  +A  + ++  
Sbjct: 30  KGRQLDDAAWDQVRALLGDKP--RRADLLIEHLHLIQDEYGHLSAAHLRALAEEMRLSMA 87

Query: 74  RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            V E+ATFY  F +   G        +++C +  C + G ++L       +         
Sbjct: 88  EVYEVATFYAHFDVVKEGEVPPPALTIRICDSLACEMAGAQELKAALEEGLDAT------ 141

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP + IG +  +  T E++E +I A     GD     P  +  
Sbjct: 142 --QVRVVRAPCIGRCDTAPALEIGHNFVDHATVEKVEAVIAA-----GDIHVHVPDYEDF 194

Query: 190 SSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217
           ++    GG  +L    +    +  +D  +
Sbjct: 195 AAYSNDGGYETLKTLRATGDWEAVQDQLL 223


>gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
 gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
          Length = 565

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     ++++   + EV+   P  R +  +I  L   Q++ G +S A +  +A  + ++ 
Sbjct: 25  PKGRQVTDQAWAELREVLGDRP--RRRDLLIEFLHLIQDRYGHLSAAHLRALAEEMRLSQ 82

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F +   G        ++VC +  C L G + L     +     P    
Sbjct: 83  AEVYEVASFYAHFDVVKEGESPPPALTIRVCDSLSCELAGAQALKSALED--GLDPGQ-- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G +  +  TPE++++ I A       T    P  + 
Sbjct: 139 ----VRVLRAPCMGRCATAPVLELGHNHIDHATPEKVQQAIAA-----NHTHPTIPDYET 189

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKK 213
           +++  A GG   L D  +    +  +
Sbjct: 190 LAAYRAEGGYGVLRDLRASGDWEVVQ 215


>gi|225850512|ref|YP_002730746.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Persephonella marina EX-H1]
 gi|225645271|gb|ACO03457.1| NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit
           e) (ndh-1 subunit e) [Persephonella marina EX-H1]
          Length = 162

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + +    ++  ++++P    Q A+IP L    ++   +   A+  +A+ L +    +  
Sbjct: 7   LTPDILERIDRHLNKFP--FPQQAIIPSLHDILDKYRDIPDQAVFELADYLKVPPSDIEG 64

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           I +FY  F+      R H+++C   PC L   + L+E  +N         + DG    E 
Sbjct: 65  IVSFYDMFR-HKKNARNHIRICRNLPCHLGKYQLLLEKIKNLTGADIGKNSPDGKWYIEL 123

Query: 138 VECQGACVNAPMVMIGKDTYED---LTPERLEEIIDAF 172
           VEC G+C  AP  +I  D Y+    ++ E L++I+  +
Sbjct: 124 VECIGSCAIAPAFLINDDLYDGSKIVSEEDLKKILSRY 161


>gi|90425543|ref|YP_533913.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisB18]
 gi|90107557|gb|ABD89594.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisB18]
          Length = 157

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + + ++   + +    +  ++  +A++  L   Q  EG+VS A +   A++L ++   +
Sbjct: 1   MTLNPQTTQAIRKAADSHGGAK--AAMLEALKLVQAVEGYVSDAHLAEAASVLGVSTAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+    SPVG    + +C    C L G + + +    ++         DG  + 
Sbjct: 59  DSLATFYSHIFRSPVGE-TVILLCDGLSCYLCGGDAVRDAVMQRLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII 169
             V C G C  AP  ++   +     L+ + L ++I
Sbjct: 118 INVCCIGGCDVAPAALVGPDRRLVGPLSADDLNQLI 153


>gi|115523731|ref|YP_780642.1| NADH dehydrogenase subunit E [Rhodopseudomonas palustris BisA53]
 gi|115517678|gb|ABJ05662.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 157

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + S ++   + +    +   +  +A++  L   Q  EGWVS A +   A +L +    +
Sbjct: 1   MTLSAQTQQAIRDAAVHHGGPK--AAMLEALKLVQAAEGWVSDAHLAEAAGVLGVTTAEI 58

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +ATFY+    SPVG    + +C    C L G + + +    K+         DG  + 
Sbjct: 59  DSLATFYSHIFRSPVGE-TVLLLCDGLSCYLNGADDVRDAVMQKLGIGFGETTPDGKFTL 117

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
             V C G C  AP  ++   +     L+   L  +I+ 
Sbjct: 118 INVCCVGGCDRAPAALVGPDRQLIGPLSAADLTALIEG 155


>gi|169334686|ref|ZP_02861879.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257424|gb|EDS71390.1| hypothetical protein ANASTE_01089 [Anaerofustis stercorihominis DSM
           17244]
          Length = 160

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 5/163 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE--GWVSRAAIEVVANILDMAYI 73
               EE       +I  Y      S ++ ++++ Q Q    +++    + +A+ + +   
Sbjct: 1   MKLPEEIKKVCKNIIEYY--DNNPSDLLQIVLKIQRQIPGKFINFDIAKYIADEMQIPLS 58

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +V E+ T++        G +  + +C  T C L G +K+ E+   ++  K      DG  
Sbjct: 59  KVSEVVTYFDALSTKKRG-KYILGLCNATACSLNGKDKIKEIFERELGIKEGETTEDGLF 117

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           + E V C GAC  AP V +  +    L  E+++ +I      +
Sbjct: 118 TLELVPCFGACDVAPAVRVNDNVVGRLNEEKIKALIAKLKGAK 160


>gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 607

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIA 79
           +   +  VI+    +R    ++ +L   +   G   +  + +  +A  +D+    +    
Sbjct: 3   TVQDIENVIAARGNAREH--LMAILRDLENLSGRNVLDVSVLNTLAMKMDLPQSAISGFT 60

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FYT F   P   +  ++VC + PC + G   + +V  N +  +     +DG    EE E
Sbjct: 61  SFYTMFSTEPR-AKFIIRVCKSGPCHVMGARTIFDVIENHLGIRAGETTADGLFHLEECE 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD-TIRPGPQID 187
           C G C  AP +M+  D + +L+   ++EI+D++S  +       GP I+
Sbjct: 120 CLGLCSAAPAMMVNYDMHGNLSESNIKEILDSYSAREPAFKAEYGPGIE 168


>gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
 gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
          Length = 576

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V ++I   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E L +   + +        
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGLDAS----- 148

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE+++  I A      DT    P  + 
Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHIPAYET 200

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213
            ++    GG  +L D  +    +  +
Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAVQ 226


>gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
 gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
          Length = 566

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P  R +  +I  L   Q+  G +S   I  +A  +    
Sbjct: 26  PKGRQLEDQAHSEVLELLGEQP--RSRDMLIEFLHLIQDAYGHLSAPHIRALAEEMRTGQ 83

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E+L +   + +        
Sbjct: 84  AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLQKALEDGLDAS----- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  T E++E  I +      DT    P  + 
Sbjct: 139 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATLEKVEAAIAS-----DDTHAHIPDYET 190

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKKD 214
            ++    GG  +L +       +  ++
Sbjct: 191 FAAYEAEGGYATLKELRGGGNWEAVQE 217


>gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 576

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V ++I   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLDLIGDQP--RNRDLLIEFLHLIQDKYGCLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E L +   + +        
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAEALQKALEDGLDAS----- 148

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE+++  I A      DT    P  + 
Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVQAAIAA-----DDTHAHIPAYET 200

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213
            ++    GG  +L D  +    +  +
Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAAQ 226


>gi|116515041|ref|YP_802670.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256895|gb|ABJ90577.1| NADH dehydrogenase I chain E [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 156

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 16  FSFSEESAIWVNEVISR---YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           F  S+   + +++++ +   Y  S  Q+A I  L   QE   W+ + +I  ++ IL +  
Sbjct: 2   FELSK---LEISKILKKKKCYVNS--QAACIEALKIVQEHRKWICKDSIIAISKILSIPA 56

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
             V  IATFY      PVG R  ++ C +  C +   + + +  +  ++  P    SD  
Sbjct: 57  CEVESIATFYCHIFRKPVG-RNIIRYCDSVVCFINNFKSIKKKLKYILNISPGETTSDCR 115

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            +     C GAC   P++++ K  Y  LT + L  I+D + 
Sbjct: 116 YTLLPTCCLGACDKGPVMLVNKTLYTRLTSKMLINILDKYK 156


>gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
 gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
          Length = 576

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V E++   P  R +  +I  L   Q++ G +S A I  +A  L    
Sbjct: 36  PKGRQLEDQAHSEVLELLGDRP--RNRDLLIEFLHLIQDKFGHLSAAHIRALAEELRTGQ 93

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G ++L +   + +        
Sbjct: 94  AEIYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQQLQKALEDGLDAS----- 148

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  T E++E  I A      DT    P  + 
Sbjct: 149 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----DDTHAHVPDYET 200

Query: 189 ISS-APAGGLTSLLDNNSKKRGKKKK 213
            ++    GG  +L D  +    +  +
Sbjct: 201 FAAYEADGGYATLKDLRANGDWEAVQ 226


>gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
 gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
          Length = 568

 Score =  157 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 20/198 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      + +   V  ++   P  R +  +I  L R Q+Q G +S A +  +A  + ++ 
Sbjct: 24  PKGRQLEDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDQFGHLSAAHLRALAEEMRLSQ 81

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F +   G        ++VC +  C L G + L     +     P    
Sbjct: 82  AEVYEVASFYAHFDVIREGETPPPALTIRVCDSLSCELAGAQALKSALED--GVDPGQ-- 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-D 187
               +      C G C  AP+V +G    +  TPE +   + A     GDT    P+   
Sbjct: 138 ----VRILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPEYEG 188

Query: 188 RISSAPAGGLTSLLDNNS 205
             +   AGG  +L D  +
Sbjct: 189 FEAYRAAGGYATLADLRA 206


>gi|162148251|ref|YP_001602712.1| NADH-quinone oxidoreductase subunit E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542891|ref|YP_002275120.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786828|emb|CAP56411.1| putative NADH-quinone oxidoreductase chain E [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530568|gb|ACI50505.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 164

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P       E A  V    + YP +    A    L   Q + GWV  A +  ++++  ++
Sbjct: 6   PPLPPDLKAEIAAMVRA--ADYPRAVSVGA----LAAVQARFGWVCDAHLAELSDLTGLS 59

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
              +  +ATF+      PVG R  + +C +  C + G + L     +++  +P     DG
Sbjct: 60  VADLDGVATFFNLIFRRPVG-RHVIMMCDSVSCWIMGRDALCARLCDRLGIRPGQTTPDG 118

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            ++   + C G C +AP +++ +  + D+    ++ I D   
Sbjct: 119 AVTLLPIVCLGHCDHAPALLVDRTLHGDVDEAGIDRIADNVR 160


>gi|323139482|ref|ZP_08074530.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
           ATCC 49242]
 gi|322395284|gb|EFX97837.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylocystis sp.
           ATCC 49242]
          Length = 157

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
               E+I+ +     +   +P+L     + G V  AA+  +A  L++    +  + TFY 
Sbjct: 10  ERAREIIAAH--MGLEGPALPILHALMAEFGHVPEAAVREMAEALNITRAEMHGVVTFYH 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F   P G R  +++C    C   G EK  +    K+  +      DG+L+ E V C G 
Sbjct: 68  DFHREPHG-RHTLKICRAESCQSMGAEKQAKDFLAKLKLEWGQTTPDGSLTVEPVYCLGL 126

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C ++P  +   +    +   +L+EI+  
Sbjct: 127 CAHSPSALFDGEPIGCVDAAKLDEIVAE 154


>gi|294140412|ref|YP_003556390.1| NADH dehydrogenase I subunit E [Shewanella violacea DSS12]
 gi|293326881|dbj|BAJ01612.1| NADH dehydrogenase I, E subunit [Shewanella violacea DSS12]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           ++   +   +S   S      ++++++  P     +  I  L   Q+Q GWVS  ++ ++
Sbjct: 59  KITNRQAVDNSPQLSPCEIKQLDKLLASAP--YPAAVSIDALKVIQQQRGWVSDTSLSLL 116

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           +  + ++   +  +ATFY       VG    +  C    C L G  ++      K+H  P
Sbjct: 117 SAYIQVSVAELDSVATFYNLIFRQAVGE-VVLHPCDGISCDLMGGVEVRAAISQKLHINP 175

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                D   +   + C GAC  AP+++  K  Y  LT  ++ ++ID     +
Sbjct: 176 GETTPDNRFTLIPLPCLGACDKAPVMIASKHVYPHLTLNKIAQLIDELDGDK 227


>gi|163751849|ref|ZP_02159064.1| ATP synthase subunit E [Shewanella benthica KT99]
 gi|161328265|gb|EDP99427.1| ATP synthase subunit E [Shewanella benthica KT99]
          Length = 178

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           R+       SS   S      ++++++  P     +  I  L   Q+Q GWVS A + ++
Sbjct: 10  RILPSNGDDSS-QLSPCEIKQLDKLLASAP--YPAAVSIDALKLIQQQRGWVSDACLSIL 66

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           +  + ++   +  +ATFY       VG    +  C    C L G  ++      K+H +P
Sbjct: 67  SAYIHVSIADLDSVATFYNLIFRQAVGE-IVLHPCDGISCDLMGGVEVRAAISQKLHIEP 125

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                D   +   + C GAC  AP+++  K  Y  LT   + ++ID     +
Sbjct: 126 GETTPDKRFTLIPLPCLGACDKAPVMIASKQVYPHLTVRNIAQLIDELEENK 177


>gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
 gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
          Length = 568

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 20/210 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 + +   V  ++   P  R    +I  L + Q+  G +S A +  +A  + M+  
Sbjct: 29  KGRQLQDTAWDEVRALLGDAP--RRADLLIEHLHKIQDTHGCLSAAHLRALAEEMRMSMA 86

Query: 74  RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            + E+ATFY  F +   G        ++VC +  C L G ++L     N ++        
Sbjct: 87  EIYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQELKAALENGLNP------- 139

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
            G +      C G C  AP++ +G    +  TPE++   I A     GDT    P  +  
Sbjct: 140 -GEVRVLRAPCMGRCDTAPVLELGHAHIDHATPEKVTAAIAA-----GDTHVHIPSYETF 193

Query: 190 S-SAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           S     GG  +L         +K ++D ++
Sbjct: 194 SDYVAEGGYETLKTLRETGDWEKVQEDVLA 223


>gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
 gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
          Length = 561

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V +++   P  R +  +I  L   Q++   +S A +  +A  + ++ 
Sbjct: 21  PKGRQVEDKAWAEVRDLLGDRP--RRRDLLIEFLHLIQDEYRCLSAAHLRALAEEMRLSM 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +   G        ++VC +  C L G E+L E   N     P    
Sbjct: 79  AEVYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLREALEN--GMDPAQ-- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G +     TPE++E  I A     G+T  P  + + 
Sbjct: 135 ----VRVMRAPCMGRCDTAPVLELGHNHIGHATPEKVEAAIAA-----GETHAPVERYET 185

Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218
           +S+    GG + L    ++   ++ ++  ++
Sbjct: 186 LSAYLEEGGYSELKALRAEGDWEEVQEKILA 216


>gi|170740590|ref|YP_001769245.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           sp. 4-46]
 gi|168194864|gb|ACA16811.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Methylobacterium
           sp. 4-46]
          Length = 157

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
            A     +I+ +  ++ + A +P+L   QE+ G+V + A+ ++A+ L+++   V    TF
Sbjct: 8   DAARAAGIIAEH--AQLEGATLPILHALQERFGYVDQGAVALIADALNLSKAEVHGCITF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+  P G R  V++C    C   G + L      +         +DG ++ E V C 
Sbjct: 66  YHDFRAEPAGRR-VVKLCRAEACQAVGADALHAEILGRYGVGWHGTTADGAVTIEPVFCL 124

Query: 142 GACVNAPMVMIGKDTYEDLTPE 163
           G C   P  ++       L  E
Sbjct: 125 GLCACGPAALVDGAPVARLDAE 146


>gi|294678553|ref|YP_003579168.1| NAD-dependent formate dehydrogenase subunit gamma [Rhodobacter
           capsulatus SB 1003]
 gi|294477373|gb|ADE86761.1| NAD-dependent formate dehydrogenase, gamma subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 150

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 5/151 (3%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  +++ +     + A++P+L   Q   G++   A   +A  L +    V  +  FY 
Sbjct: 5   ARLRAILAAH--RGREGALLPILHDVQAAFGFIPEDAYAPIAADLGLTRAEVAGVVGFYH 62

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+ +P G R  +++C    C   G + +     + +  +    +    ++ E V C G 
Sbjct: 63  DFRKAPAG-RHVIKLCRAEACQAMGMDAVQARLESALGLRLGDSSE--AVTLEAVYCLGL 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C  AP  M+       L    +  I+     
Sbjct: 120 CACAPAAMVDDRLVGRLDAAAVAGIVAELGA 150


>gi|189219242|ref|YP_001939883.1| NAD-dependent formate dehydrogenase gamma subunit
           [Methylacidiphilum infernorum V4]
 gi|189186100|gb|ACD83285.1| NAD-dependent formate dehydrogenase gamma subunit
           [Methylacidiphilum infernorum V4]
          Length = 159

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
             + +IP   + QE+ G++ +  I  +A+  +++      + TFY  F+  P G +  ++
Sbjct: 25  KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 83

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   GC K+I   +  +        +DG L+     C G C N P V +    Y
Sbjct: 84  ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 143

Query: 158 EDLTPERLEEIIDA 171
             +  +++E+++ +
Sbjct: 144 GRVNTQKMEKLLAS 157


>gi|161075749|gb|ABX56622.1| formate dehydrogenase gamma subunit [Methylacidiphilum infernorum
           V4]
          Length = 153

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
             + +IP   + QE+ G++ +  I  +A+  +++      + TFY  F+  P G +  ++
Sbjct: 19  KPNGLIPFYHKLQEELGYIPKEFIPQIASSFNLSQAEAYGVLTFYADFRTEPTG-KNILK 77

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           +C    C   GC K+I   +  +        +DG L+     C G C N P V +    Y
Sbjct: 78  ICRAEACQANGCHKIITKAKEVLDIDFGQTTADGKLTLLPTYCFGNCANGPSVSLNGRLY 137

Query: 158 EDLTPERLEEIIDA 171
             +  +++E+++ +
Sbjct: 138 GRVNTQKMEKLLAS 151


>gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
 gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 560

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    + + +   V  +I   P  R    +I  L   Q+  G +S   +  +A ++ ++ 
Sbjct: 20  PKGRQYDDVALEEVQALIGSRPLDR--DLLIEFLHLIQDAYGHLSARHLRALAEVMRLSM 77

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +            ++VC +  C L G ++L     +     P    
Sbjct: 78  AEVYEVATFYAHFDVVKENETPPPALTIRVCDSLSCELAGAQQLKAALED--GLDPTE-- 133

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G    +  TPE++   I A       T    P  + 
Sbjct: 134 ----VRVLRAPCMGRCDTAPVLELGHHHIDHATPEKVRAAIAA-----NHTHADIPDYET 184

Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
            +     GG T+L D       +  +D  ++
Sbjct: 185 FAKYQAEGGYTALQDLRENGDWEAVQDKVLA 215


>gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum
           ferrodiazotrophum]
          Length = 624

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 14/194 (7%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           ++   + +++  +       AVIP+     E+E +VS  A+E++  I   +   +L + T
Sbjct: 7   DTKQDLEKILQEW--DNPGQAVIPMFHYFMERENYVSPEALELIGQITGFSQSDLLGVGT 64

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           FY  F     G R  ++VC  TPC+  G + L+   + ++         DG  S +  +C
Sbjct: 65  FYQYFSFHKEG-RHIIRVCLATPCVYCGGKGLLSALQKELGIGLDETTPDGVFSLKPAQC 123

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
            G C  AP ++I  + + ++TP  +  ++  +  G+   + P P      + P G    L
Sbjct: 124 VGQCHEAPTLVIDTNIHNNVTPGEIPALLKQYREGK---VSPQP------AVPMGPP--L 172

Query: 201 LDNNSKKRGKKKKD 214
           ++      G K K+
Sbjct: 173 VNEPVVFTGLKAKE 186


>gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
 gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
          Length = 561

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 20/210 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V  ++   P  R +  +I  L   Q+  G +S A +  +A  L +A 
Sbjct: 21  PKGRQLDDQAWDEVRALLGDRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEELRVAQ 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+ATFY  F +   G        ++VC +  C L G E+L     +     P    
Sbjct: 79  AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLACELAGAEQLKSALES--GLDPAE-- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G +  +  TPE++E  I       GDT    P    
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVEAAIAV-----GDTHAHLPDYQT 185

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKI 217
           + +  A GG   L +       +  +   +
Sbjct: 186 LDAYRAEGGYARLAEIRDGGDFETIQQTLL 215


>gi|114566550|ref|YP_753704.1| Fe-hydrogenase subunit gamma [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337485|gb|ABI68333.1| Fe-hydrogenase, gamma subunit [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 148

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+I++Y        +I        +  ++   AI   A +  ++      IATFY+ F 
Sbjct: 5   KEIIAQY--DGKAGGIIEAYHALLREFSYLPEEAIAEAARVFKLSTAEAYGIATFYSMFS 62

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           +   G +  V++C + PC + G   ++     ++  K     +DG  + E  EC G C  
Sbjct: 63  VEARG-KNVVRICESAPCHVAGAADVVAALERELGIKMGESTADGKFALEFTECVGQCQA 121

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFS 173
            P++ +    Y D++P ++  II  + 
Sbjct: 122 TPVITVNGKPYLDVSPAQIPAIIAEYK 148


>gi|325971422|ref|YP_004247613.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
 gi|324026660|gb|ADY13419.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Spirochaeta sp.
           Buddy]
          Length = 164

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 21  ESAIWVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEI 78
           +  + +  +++ +   R   A++ +L   Q   +  ++S+  + +VA  +++    V  +
Sbjct: 3   DRHVAIEAIVASHRTER--GALLSILEAVQRTNEHNYLSKEELILVAKAMEVPLSTVYSV 60

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----RNSDGTLS 134
           ATFY  F L P G    + VC  T C  RG + L++    +++ +          D   +
Sbjct: 61  ATFYAFFNLKPQGE-HVITVCRGTACHTRGSKPLLQQVLKQLNLELDEEGTATTDDVRFT 119

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              V C G C  AP++ I    +  +T ++L +++   
Sbjct: 120 VHTVACFGQCALAPVIAIDSVIHSRVTEQKLTQLLQTL 157


>gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.]
          Length = 561

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 20/209 (9%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             +P      + +   V +++ + P  R +  +I  L   Q+  G +S A +  +A  + 
Sbjct: 18  RVRPKGRQLDDLAWSQVQDLLGQRP--RRRDLLIEFLHLIQDAYGHLSAAHLRALAEEMR 75

Query: 70  MAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++   V E+ATFY  F +   G        V+VC +  C L G  +L E  +  +  K  
Sbjct: 76  LSQAEVYEVATFYAHFDVVKEGETPPPALTVRVCDSLSCELAGAAQLQEALQQGLDPK-- 133

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
                 ++      C G C  AP++ +G    +  TPE++   I A     G T    P 
Sbjct: 134 ------SVRVVRAPCMGRCDTAPVLELGHHHIDHATPEKVLAAISA-----GHTHAESPD 182

Query: 186 IDRISSAP-AGGLTSLLDNNSKKRGKKKK 213
            + +++   AGG   L +  +    ++ +
Sbjct: 183 YEDLAAYRSAGGYARLEELRAGGDWQEVQ 211


>gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 745

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RR A+    P       +++  +  ++     SR +  +I  L   Q++ G +S A +  
Sbjct: 194 RRRAKPT--PKGRQIDPKASEEIEFLLE--GKSRRRDMLIEYLHLIQDKWGQISAAHLAA 249

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVG----TRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           +A+ + +A+  V E+ATFY  F +   G        ++VC +  C + G E L++  +NK
Sbjct: 250 LADEMKLAFAEVFEVATFYAHFDVVKEGAPDIAPVTIRVCDSLTCAMLGAETLMKELKNK 309

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
                        +      C G C  AP   +G +  +  T   ++ ++ A    Q DT
Sbjct: 310 AGPG---------VRVVRAPCVGRCDTAPAAEVGHNFVDHAT---VDNVLAALK--QHDT 355

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
               P      S  A G  +LL  NS + GK  K+D +
Sbjct: 356 HVHVPDYVEYESYIAQGGYTLL--NSLRSGKTSKEDIL 391


>gi|160936611|ref|ZP_02083978.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440402|gb|EDP18147.1| hypothetical protein CLOBOL_01501 [Clostridium bolteae ATCC
           BAA-613]
          Length = 164

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQ--EGWVSRAAIEVVANILDMAYIR 74
             + E    +            +  ++ +L   Q      ++      +VA  + M   R
Sbjct: 6   QLTAEEKRAIIR-----DNGGDKEHLLAILYELQNASGYNYIDEETAALVAEEVGMNPTR 60

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           V +I TFY   +  P   R  ++VC +TPC     E++ ++ + ++         DG  +
Sbjct: 61  VYDIITFYAMLKTEPK-ARYVLKVCNSTPCHFSRSEEIAQILKEELGVGIGETTEDGVFA 119

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +  + C GAC   P++ +    Y +L   ++ +++    +G+
Sbjct: 120 YHYIPCVGACDIGPVIKVKDTVYGNLDRRKIRQLLADLRSGK 161


>gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum]
          Length = 627

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E++A    E++  +  S  + AV+PLL    E++ ++S A +  ++ +  ++   +L I 
Sbjct: 10  EKNARSEKEILEEW--STPEQAVLPLLHYYMEKKNYISEADVSRISQLTGLSVSDILGIG 67

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F   P G +  V+VC TTPC+ RG +K  E     +         DG  +    +
Sbjct: 68  TFYQHFVFHPTG-KNSVRVCLTTPCLFRGGKKTFETLSKSLGIGLEETTPDGLFTLYPAQ 126

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C G C  AP   I  D Y  + PE++  I+D +  G+
Sbjct: 127 CLGQCSEAPSFSINDDVYVGIPPEKIPSILDEYRKGK 163


>gi|307292623|ref|ZP_07572469.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306880689|gb|EFN11905.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 155

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E++   + +    +   R +  ++PLL   QE+ G++  AAI  +A  L+++   V  + 
Sbjct: 4   EDTVRLIEDWTKAH--GRTRDRLLPLLHMLQEEIGFIDDAAIPAIAENLNLSRADVHGVV 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+ +P G R  V+ C    C  RG   + +    ++         DG ++ E + 
Sbjct: 62  TFYHDFRRAPAG-RHVVKFCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C   P  ++       +    LE I    + 
Sbjct: 121 CLGLCAIGPNALVDGKPVARIDQAALERIAQEIAA 155


>gi|298528243|ref|ZP_07015647.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511895|gb|EFI35797.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 153

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +++VI  Y  +  +   + LL   +E  G+V    +  +++ L++   R   IATF++Q 
Sbjct: 5   LDKVIENYHEN--EGNALTLLQDLEENFGYVPEETVYELSDRLNIPPSRFFGIATFFSQL 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGAC 144
            L P G +  + VC  TPC ++G EK++   R ++        + D   + EEV C GAC
Sbjct: 63  HLKPRG-KNIITVCRGTPCHVKGSEKILSRMRMELDIPSGEETSEDRMFTVEEVNCVGAC 121

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             AP+V+I +    ++  +++ + ++     +
Sbjct: 122 GMAPVVVINQQVQGEVNIKKMMKEVNELRAEE 153


>gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 570

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 22/209 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        ++  + E+++    S  +  +I  L   Q++ G +S A +  +A+ + +++
Sbjct: 26  PKGRQIDPRASGEIEELLA--GKSHRRDMLIEHLHLIQDKWGQISAAHLAALADEMKLSF 83

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +   G        ++VC +  C + G + L++  +NK   +     
Sbjct: 84  PEVFEVATFYAHFDVVKEGEPDIPPLTIRVCDSLTCAMLGADTLMKELQNKAGPE----- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C +AP+  +G +  ++ TP ++       +  +GDT    P    
Sbjct: 139 ----VRVVRAPCVGRCDHAPVAEVGHNFIDEATPAKVLA-----AADEGDTHAHVPDYIE 189

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             S  A G  +LL  NS + G+  K+D +
Sbjct: 190 YDSYVAQGGYALL--NSLRSGQTSKEDIL 216


>gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 562

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      + +   V +++   P  R +  +I  L   Q++ G +S A I  +A  +    
Sbjct: 22  PKGRQVDDIALSEVQDLLGDRP--RNRDLLIEFLHLIQDKYGHLSAAHIRALAEEMRTGQ 79

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G ++L +   + +        
Sbjct: 80  AEIYEVASFYAHFDVVKEGEAPPPELTIRVCDSLSCELAGAQQLQKALEDGLDAS----- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  T E++E  I A     GDT    P  + 
Sbjct: 135 ---QVRVLRAPCMGRCDTAPVLEIGHNHIDHATVEKVEAAIAA-----GDTHAHIPAYET 186

Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKK 213
            +     GG  +L D  +    +  +
Sbjct: 187 FADYEAEGGYAALKDLRANGDWEAVQ 212


>gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
 gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
          Length = 570

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 20/210 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      + +   V  ++   P  R +  +I  L   Q++ G +S A +  +A  + ++ 
Sbjct: 30  PKGRQLQDAAWEEVRALLGERP--RRRDLLIEYLHLIQDRFGHLSAAHLRALAEEMRLSM 87

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F +   G        ++VC +  C L G + L       +        
Sbjct: 88  AEVYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQALKSALEEGLDPT----- 142

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G +  +  TPE+++  I A      DT    P  + 
Sbjct: 143 ---QVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVQAAIVA-----QDTHAQLPDYEP 194

Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217
             S    GG  +LL   +       ++  +
Sbjct: 195 YQSYMNTGGYEALLSLRAGGDWGAVQEQLL 224


>gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
 gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
          Length = 580

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   + +++   P  R +  +I  L   Q++ G++S A I  +A  +    
Sbjct: 40  PKGRQLDDQAHSEILDLLGERP--RDRDLLIEFLHLVQDKFGYISAAHIRALAEEMRTGQ 97

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E+L +     ++       
Sbjct: 98  AEIFEVASFYAHFDVVKEGENPPPALTIRVCDSLSCELAGAEQLKKALEEGMNP------ 151

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID- 187
               +      C G C  AP++ IG +  ++ T E++E  I A      DT    P  + 
Sbjct: 152 --AKVRVLRAPCMGRCDTAPVLEIGHNHIDNATVEKVEAAIAA-----DDTHVHVPPYEI 204

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
               A AGG   L +  +    +  ++  +S
Sbjct: 205 YREYAIAGGYEVLKNLRAHGDWEAVQETVLS 235


>gi|294146590|ref|YP_003559256.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
           japonicum UT26S]
 gi|292677007|dbj|BAI98524.1| NAD-dependent formate dehydrogenase gamma subunit [Sphingobium
           japonicum UT26S]
          Length = 155

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EE+A  + +    +   R +  ++PLL   QE+ G++   AI+++A  L++    V  + 
Sbjct: 4   EETARLIEDWTQTH--GRTRDRLLPLLHMLQEEIGFIDGNAIKIIAEKLNLTRADVHGVV 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY  F+ +P G R  V++C    C  RG   + +    ++         DG ++ E + 
Sbjct: 62  TFYHDFRRAPAG-RHVVKLCRAESCQARGAAAMEKAAAERLGVPMGETRPDGQVTLEPIY 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C   P  ++       +    L+ I    + 
Sbjct: 121 CLGLCAVGPNALVDGRPVARIDAAALDRIAQEVAA 155


>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
 gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
 gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
 gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
          Length = 602

 Score =  154 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  ++ RY   R +  +I +L   Q + G +  A +  +   L ++ + + E A+FY  
Sbjct: 4   RITTILERYRSDRTR--LIDILWDVQHEYGHIPDAVLPQLGAGLKLSPLDIRETASFYHF 61

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           F   P G +  + +C +    + G + + E    +   +    + +G     +  C G  
Sbjct: 62  FLDKPSG-KYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGLS 120

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
              P ++I K  +  L P ++ +II     G+       P
Sbjct: 121 DQEPAMLIDKVVFTRLRPGKITDIIAQLKQGRSPAEIANP 160


>gi|226227789|ref|YP_002761895.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090980|dbj|BAH39425.1| putative formate dehydrogenase gamma subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 166

 Score =  154 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
               + +++++ P       ++P+L + Q   G+VS+ A+  +A   +++   V  + TF
Sbjct: 8   EQAVIADLLAQSPTG--AEHLLPVLQQVQATVGFVSQDAMRQIAQAFNISRADVYGVVTF 65

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           YT  + +PVG    +Q+C    C   GC +L     + +        +D  +  E   C 
Sbjct: 66  YTDLREAPVGQ-YVMQLCMAEACQSVGCRELAAHATHVLGVPLGQTTADHRIHLEAAYCF 124

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           G C   P + I       +TP R +E++   
Sbjct: 125 GNCALGPTMRIDDRIVGGVTPARFDELLAEL 155


>gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
 gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
          Length = 563

 Score =  154 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 20/214 (9%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             +P      + +   V  ++   P  R +  +I  L   Q+  G +S A +  +A  + 
Sbjct: 18  RHRPKGRQLDDAAWAEVQALLGDRP--RHRDLLIEFLHLIQDAHGCLSAAHLRALAEEMR 75

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++   V E+ATFY  F +   G        +++C +  C L G ++L     + +     
Sbjct: 76  LSQAEVYEVATFYAHFDVVKEGEPVPPALTIRICDSLSCELAGAQQLKTALEDGLDASE- 134

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
                  +      C G C  AP + +G +  +  T +++   I A     GDT    P 
Sbjct: 135 -------VRVLRAPCMGRCDTAPALELGHNHIDHATFDKVAAAIAA-----GDTHAHVPD 182

Query: 186 IDRISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218
            +  S+  A GG   L         +  +D  ++
Sbjct: 183 YEGYSAYVANGGYAQLQALREGGDWEDVQDKVLA 216


>gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 570

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 20/209 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 E++   V  +++  P  R    +I  L   Q++ G +S A +  +A  + M+  
Sbjct: 31  KGRQLQEDAWDDVRALLADKP--RRADLLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMA 88

Query: 74  RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            V E+ATFY  F +   G        +++C +  C L G + L     + +         
Sbjct: 89  EVYEVATFYAHFNVVKEGETPPPALTIRICDSLSCELAGAQALKTALEDGLDASE----- 143

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP + IG +  +  T E+++++I A     GDT    P  +  
Sbjct: 144 ---VRVVRAPCMGRCDTAPALEIGHNFVDHATLEQVKQVIAA-----GDTHVHMPDYEAF 195

Query: 190 SSAPAGGLT-SLLDNNSKKRGKKKKDDKI 217
            +  AGG   +L         +  + + +
Sbjct: 196 DAYVAGGGYEALKKLRRDGDWEDVQQNLL 224


>gi|296127183|ref|YP_003634435.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
           murdochii DSM 12563]
 gi|296018999|gb|ADG72236.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Brachyspira
           murdochii DSM 12563]
          Length = 163

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 18  FSEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
            +EES    +  ++ ++  +  +  +I +    Q+  G+V R   + V+  +++   R+ 
Sbjct: 8   LTEESIADEIKALVEKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEQINIPLARIY 65

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSW 135
           EI TFY  F + P     ++ VC  T C L+G  +L+E  + K++ K   + ++D     
Sbjct: 66  EILTFYNYFTMEPPAE-NNIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKL 124

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           EEV C G C  AP++    D    +  + + + I+ 
Sbjct: 125 EEVRCIGCCGLAPVITFNGDVSGRVVVDDISKFIED 160


>gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 562

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
             QP    + + +   V  ++   P  R +  +I  L   Q++ G +S A +  +A  + 
Sbjct: 18  RNQPKGRQYEDGAMAEVRALLGDKP--RDRDLLIEHLHLIQDEYGHLSAAHMRALAEEMR 75

Query: 70  MAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           ++   V E+A FY+ F +            ++VC +  C L G + L+   ++ +     
Sbjct: 76  LSQAEVYEVAKFYSHFDVVKEDEIAPPDLTIRVCDSLSCELAGAQALMAALKDGL----- 130

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
                  +      C G C  AP++ IG +  +  TP+ +E+ I A      DT    P+
Sbjct: 131 ---DPAKVRVLRAPCMGRCDTAPVLEIGHNHIDHATPQLVEKAIAA-----QDTHAHIPE 182

Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKD 214
            +   +  A G  +  +  + + G    D
Sbjct: 183 YETFDAYHAAGGYA--ELAALRGGSMTPD 209


>gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 634

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           + AV+PLL    E++ ++S + +  ++ +  ++   +L I TFY  F   P G +  V+V
Sbjct: 34  EQAVLPLLHYYMEKKNYISESDVSKISQLTGLSVSDILGIGTFYQHFVFHPTG-KNSVRV 92

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C TTPC+ RG +K  E     +         DG  +    +C G C  AP   I  D Y 
Sbjct: 93  CLTTPCLFRGGKKTFETLSKTLGIGLEETTPDGLFTLYPAQCLGQCSEAPSFSINDDVYV 152

Query: 159 DLTPERLEEIIDAFSTGQ 176
             +PE +  I++ +  G+
Sbjct: 153 GTSPEEIPSILEEYRKGK 170


>gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
 gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
          Length = 570

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 20/209 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 E++   V  +++  P  R    +I  L   Q++ G +S A +  +A  + M+  
Sbjct: 31  KGRQLQEDAWDEVRALLADKP--RRADVLIEHLHLIQDKFGHLSAAHLRALAEEMRMSMA 88

Query: 74  RVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            V E+ATFY  F +   G        +++C +  C L G + L     + +         
Sbjct: 89  EVYEVATFYAHFDVVKEGEAPPPALTIRICDSLSCELAGAQALKTALEDGLDASE----- 143

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP + IG +  +  T E+++++I A     G T    P  +  
Sbjct: 144 ---VRVVRAPCMGRCDTAPALEIGHNFVDHATLEKVKQVIAA-----GYTHVHVPDYEAF 195

Query: 190 SSAPAGGLT-SLLDNNSKKRGKKKKDDKI 217
            +  AGG   +L         +  + + +
Sbjct: 196 DAYVAGGGYEALKKLRRDGDWEDVQQNLL 224


>gi|253698813|ref|YP_003020002.1| NADH dehydrogenase subunit E [Geobacter sp. M21]
 gi|251773663|gb|ACT16244.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacter sp. M21]
          Length = 155

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 26  VNEVISRYPPSRCQSAVIP------LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           ++E + +    R   A+ P      ++   Q   GW++  A+   A +L ++ ++V E+A
Sbjct: 2   ISEALKKSLTERVAGAITPREAAVDVMKELQAHYGWLTDEAVAEAAALLGLSPLQVEELA 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           TFY      PVG +  + VC +  C    C+ +IE  + ++  +     +DG  +     
Sbjct: 62  TFYEMIYRRPVGKK-VIHVCDSISCWCADCDGIIEHLKKRLGVELGGTTADGMYTLLPCA 120

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C ++P + +G   Y  LTP  ++EI++    
Sbjct: 121 CMGRCGDSPAMSVGDTPYGHLTPHLVDEILEKERA 155


>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
 gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 562

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   + +++   P  R +  +I  L   Q++ G +S A I  ++  + +  
Sbjct: 22  PKGRQLDDQAHTEILDLLGARP--RDRDLLIEFLHLVQDKFGHISAAHIRALSEEMRVGQ 79

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+A+FY  F +   G        ++VC +  C L G E+L +   + ++       
Sbjct: 80  AEIYEVASFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLKKALEDGMNP------ 133

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  T  ++E  I +      DT    P  + 
Sbjct: 134 --AQVRVLRAPCMGRCDTAPVLEIGHNHIDHATLAKVETAIAS-----DDTHAHIPDYET 186

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKKDDKIS 218
             S  A GG   L D       +  ++  +S
Sbjct: 187 YESYAAEGGYAVLQDLRESGDWEAVQEKVLS 217


>gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 257

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P+  S   ++   V  V++R+     +  ++ +L   QE+  W+S   +  VA    +  
Sbjct: 2   PNGNSNGSDTGAVVAAVLARHGSDGTR--LMQILREIQEETEWLSPDILTRVAEGAKLPR 59

Query: 73  IRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +V  +A FY  F   P+G+   +     T   + G   L+     K+  KP   + DG 
Sbjct: 60  GQVEGVAGFYHFFHTEPLGSYRVLWSDNITD-RMAGNADLMARMCKKLWLKPGKVSEDGL 118

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           +S +   C G C   P +++       +T ER+++I+D   
Sbjct: 119 VSVDTTSCTGLCDQGPALLVNYRPVTRMTAERVDQIVDLIR 159


>gi|90579192|ref|ZP_01235002.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
 gi|90440025|gb|EAS65206.1| NADH-quinone oxidoreductase, E subunit [Vibrio angustum S14]
          Length = 188

 Score =  152 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++    + E I+ YP  R  +  I  L   Q++ G++++ ++ +V+ + D++  ++ E
Sbjct: 2   LTDQERAHLEEHIAHYPEKRAGA--IYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT  +  PVG R  ++VC +  C  RG +K++E   N   +      +DG+++   
Sbjct: 60  LITFYTLLRRRPVG-RNVMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
             C G C  AP  +I  D    +LTPER+  I+   +  +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158


>gi|89073314|ref|ZP_01159844.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
           SKA34]
 gi|89051024|gb|EAR56488.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Photobacterium sp.
           SKA34]
          Length = 188

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            +++    + E I+ YP  R  +  I  L   Q++ G++++ ++ +V+ + D++  ++ E
Sbjct: 2   LTDQERAHLEEHIAHYPEKRAGA--IYCLYFMQDKYGYITKPSLNLVSELTDLSTTQLDE 59

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           + TFYT  +  PVG R  ++VC +  C  RG +K++E   N   +      +DG+++   
Sbjct: 60  LITFYTLLRRRPVG-RNIMRVCDSISCHTRGAKKVLEAAENATGKALGEIANDGSITVLP 118

Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176
             C G C  AP  +I  D    +LTPER+  I+   +  +
Sbjct: 119 SICLGLCDRAPAALINDDRVEGELTPERMRMILTELAEEE 158


>gi|323526973|ref|YP_004229126.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1001]
 gi|323383975|gb|ADX56066.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1001]
          Length = 161

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+++R+  ++   +++ +L   Q++ G+V  AA+  +A +++++   V  + T+Y  F+
Sbjct: 10  EELVARH--AQPGRSLVAVLHAIQDELGYVPPAAVAPLARVMNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P      VQ+C    C   G E L +   +    +    +  G  +  E V C G C 
Sbjct: 68  TQPAAA-VTVQLCRAEACRSMGTEALAQHIESHTGCRFDAAHEAGAAVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152


>gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
 gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
          Length = 609

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ +++RY   R +  ++ +L+  QE EG++S +++ V+A+ L+++ + V E  +FY   
Sbjct: 5   VDAIMARYLHRRER--LLDMLIALQETEGYISDSSVNVLASGLNLSPLDVRETISFYHFL 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G +  + +  T    ++G E++       I         +G     + +C G   
Sbjct: 63  HDQPAG-KHTIYLADTVIARMKGYEEVKAALEEAIGCAFGEVTENGEFGLYDTQCIGLSD 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             P +++    +  LTP++++ ++ A   G        P
Sbjct: 122 QEPAMLVDGIPFTHLTPDKVQTLVVALKAGVSPQALANP 160


>gi|237755576|ref|ZP_04584193.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692275|gb|EEP61266.1| NADH-quinone oxidoreductase, subunit e [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 160

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    + E    +     +  +I  L     +   ++   +  ++N L++   ++  
Sbjct: 6   LTPEIINKIEEYKKEFLT--KEQVIIQALHLIYSKYRDITLDHMLELSNYLEVPLSQIEG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           I +FY  F++     R H++VC   PC + GC+KLIE+      ++    + +G    E 
Sbjct: 64  IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLIELFEKLTGEERNQESKNGRFYIET 122

Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
           VEC GAC  AP  MI  D Y+   +T E+L EI+  +
Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159


>gi|144897649|emb|CAM74513.1| NADH dehydrogenase I chain E [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 152

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +A     +I  +   R   A++P+L   QE+ G+V +AA+ ++A  L+++   +  + +F
Sbjct: 7   NAERARAIIESHRALR--GALLPMLHALQEEFGYVDQAAVPLLAAALNLSQAEIHGVISF 64

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y +F+ S  G R  V+VC    C  RG + L+E  + K+        SDG  + E V C 
Sbjct: 65  YHEFRQSRSG-RHVVKVCVAEACQARGSDTLVEHLKAKLGLDLGQTGSDGAFTLEAVYCL 123

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIID 170
           G C   P  ++       L+P RL+  + 
Sbjct: 124 GNCALGPSALVDDRLLGRLSPARLDGALA 152


>gi|307730639|ref|YP_003907863.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia sp.
           CCGE1003]
 gi|307585174|gb|ADN58572.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. CCGE1003]
          Length = 161

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+++R+  ++   +++ +L   Q++ G+V    +  +A +++++   V  + T+Y  F+
Sbjct: 10  EELVARH--AQPGRSLLAVLHAIQDELGYVPPDTVAPLARVMNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P      VQ+C    C   G E L     +    +    +  G  +  E V C G C 
Sbjct: 68  TQPAAP-VTVQLCRAEACRSMGTEALARHIESHTGCRFDAEHEAGAAVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPAMMVNGTLHARVTPQKFDAIFAA 152


>gi|209519329|ref|ZP_03268128.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. H160]
 gi|209500213|gb|EEA00270.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. H160]
          Length = 161

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y  F+
Sbjct: 10  DQLVQRH--AQPGRSLMTILHAIQDELGYVPPAAVGPLAGALNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
            +P      VQ+C    C   G E L +        +    + DG  +  E V C G C 
Sbjct: 68  TTPAAP-VTVQLCRAEACRSMGTEALAQHIETHTGCRFDAGHEDGAKVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  ++P++ + +  A
Sbjct: 127 LSPAMMLNGTLHARVSPQKFDALFAA 152


>gi|167586516|ref|ZP_02378904.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ubonensis Bu]
          Length = 158

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + +++R+  +    +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVARH--AHGGRSLVAVLHAIQDEAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P   R  +Q+C    C   GCE L    + +        ++ G ++ E V C G C  
Sbjct: 67  TEPP-ARVTIQMCRAEACRSMGCEALAAHAQARTGCTFDASHA-GAVALESVYCLGLCAQ 124

Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171
           +P + +    +  +TPE+ + ++  
Sbjct: 125 SPSMTVNGVLHARVTPEKFDALLAD 149


>gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 567

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    +S+E+   V  V+   P  R +  +I  L   Q+  G +S   +  +A  + +  
Sbjct: 27  PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDVYGHLSADHLAALAFEMKLGQ 84

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G        ++VC +  C L G E+L       +        
Sbjct: 85  AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCALAGAEQLRAALEEGL-------- 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-D 187
             G +      C G C  AP++ +G +  +  TPE++   I A     GDT    P    
Sbjct: 137 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA-----GDTHAHLPDYEG 191

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKD 214
             + A AGG   L    +    +  +D
Sbjct: 192 FDAYAAAGGYAVLKGLRAGGDWEAVQD 218


>gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
 gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
          Length = 568

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 20/203 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 + +   V  ++   P  R +  +I  L R Q++ G +S A +  +A  L ++  
Sbjct: 25  KGRQLEDGAWAEVQALLGEGP--RRRDLLIEYLHRIQDKFGHLSAAHLRALAEELRLSQA 82

Query: 74  RVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            V E+A+FY  F +   G        ++VC +  C L G + L                 
Sbjct: 83  EVYEVASFYAHFDVVREGETPPPALTIRVCDSLSCELAGAQALKSALE--------QGTD 134

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP+V +G    +  TPE +   + A     GDT    P  + +
Sbjct: 135 PMQVRILRAPCMGRCDTAPVVELGHHHIDHATPESVLAAVAA-----GDTHAHVPAYEAL 189

Query: 190 SSAP-AGGLTSLLDNNSKKRGKK 211
            +   AGG  +L D  + +    
Sbjct: 190 DAYRTAGGYATLADLRATRNADA 212


>gi|325302644|tpg|DAA34098.1| TPA_exp: NADH-ubiquinone dehydrogenase [Amblyomma variegatum]
          Length = 137

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R +E       F F+ E+      + S YP     +AVIPLL  AQ Q GW+   A
Sbjct: 38  LFVHRDSELNNAKVKFEFTPENLKRAEAITSIYPEGHRSAAVIPLLDLAQRQHGWLPLTA 97

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT 101
           +  VA+ L M  +RV E+ATFYT F   PVG R HVQVC T
Sbjct: 98  MHYVADYLGMPRMRVYEVATFYTMFMRQPVG-RYHVQVCTT 137


>gi|254431436|ref|ZP_05045139.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
           sp. PCC 7001]
 gi|197625889|gb|EDY38448.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, putative [Cyanobium
           sp. PCC 7001]
          Length = 178

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 6/164 (3%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
            P+      ++      +I +        A+I +L + QE  G++   A+E VA  L + 
Sbjct: 4   PPTLAELPPQAVERTTRLIRQ--QRGRADALIEVLHQVQELYGYLPPGALEQVARELKLP 61

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             RV  +A+FY  F+L          VC  T C ++G  +L      ++  +      +G
Sbjct: 62  LARVHGVASFYHLFRLEAPTA-HRCAVCLGTACFVKGGGELAARLEQRLGLQLDDPAGNG 120

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDL---TPERLEEIIDAF 172
             + E V C GAC  AP++++       L    P  L+  + A 
Sbjct: 121 NWALEHVSCLGACGQAPVLVVDGQMEPRLPMDDPAALDGRLAAL 164


>gi|330815878|ref|YP_004359583.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
 gi|327368271|gb|AEA59627.1| Formate dehydrogenase, gamma subunit [Burkholderia gladioli BSR3]
          Length = 156

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
            + ++SR+  +R   +++ +L   Q++ G+V    + ++A  L+++   V  + T+Y  F
Sbjct: 8   ADALVSRH--ARADQSLVAILHAIQDEAGYVPEGCVPLLAKTLNLSRAEVHGVLTYYHHF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           + +P   R  +Q+C    C   G E L+E  + +   +     + G +  E V C G C 
Sbjct: 66  RTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDQ-GAQGDVELESVYCLGFCA 123

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P  MI  + +  +T  R + ++ A
Sbjct: 124 QSPSAMINGEPHARMTAARFDALLTA 149


>gi|170693703|ref|ZP_02884861.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           graminis C4D1M]
 gi|170141485|gb|EDT09655.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           graminis C4D1M]
          Length = 161

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
            E+++R+  ++   +++ +L   Q++ G+V  AA+  +A  ++++   V  + T+Y  F+
Sbjct: 10  EELVARH--AQPGRSLLAVLHAIQDELGYVPPAAVPPLARTMNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P      VQ+C    C   G E L +   +    +    +  G  +  E V C G C 
Sbjct: 68  TQPAAP-VTVQLCRAEACRSMGTEALAQHIESHTGCRFDAEHKAGAAVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPAMMVNGTLHAKITPQKFDAIFAA 152


>gi|86279690|gb|ABC94500.1| NADH dehydrogenase flavoprotein 2 [Ictalurus punctatus]
          Length = 124

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 52/91 (57%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
            V R   E    + F F+ E+   V  +I+ YP    Q+A IP+L  AQ Q GW+  +A+
Sbjct: 34  FVHRDTPENNPDTPFEFTPENMKRVEAIITNYPEGHKQAATIPVLDLAQRQHGWLPISAM 93

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
             VA ILD++ +RV E+ATFYT F   PVG 
Sbjct: 94  NKVAEILDVSPMRVHEVATFYTMFNRQPVGK 124


>gi|295677292|ref|YP_003605816.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1002]
 gi|295437135|gb|ADG16305.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Burkholderia sp.
           CCGE1002]
          Length = 161

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           ++++ R+  ++    ++ +L   Q++ G+V  AA+  +A +L+++   V  + T+Y  F+
Sbjct: 10  DQLVQRH--AQPGRTLMTVLHAIQDEIGFVPPAAVGPLARVLNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
            +P      VQ+C    C   G E L +        +    + DG T+  E V C G C 
Sbjct: 68  TTPAAP-VTVQLCRAEACRSMGTEALAQHIEAHTGCRFDAGHHDGATVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + ++ A
Sbjct: 127 LSPAMMLNGTLHARVTPQKFDALLAA 152


>gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 102/208 (49%), Gaps = 10/208 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + A  ++ +++RYP  +    ++P+++   +++G++S  ++  +AN + M   +V 
Sbjct: 74  TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMYAPQVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134
            + + Y  F      +  HV +C    CM++G +K+++  + K   +  H   + +G  +
Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           +  +   G CVN  P ++I   G D  E LT    + I ++ ++ +G T +         
Sbjct: 191 FHAMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDSIEESLNSLKGKTYKWAKNNIVEQ 250

Query: 191 SAPAGG-LTSLLDNNSKKRGKKKKDDKI 217
           S  A G   SL++N+   +   KK  ++
Sbjct: 251 SLKAKGKEYSLIENHISVKDAIKKAVQM 278


>gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
          Length = 561

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 20/210 (9%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYI 73
                 + +   +  ++   P  R +  +I  L   Q+  G +S A +  +A  + ++  
Sbjct: 22  KGRQLDDGAMAEILALLGDRP--RRRDLLIEFLHLVQDANGHLSAAHLRALAEEMRLSQA 79

Query: 74  RVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
            V E+ATFY  F +            ++VC +  C L G + L     +     P     
Sbjct: 80  EVYEVATFYAHFDVVKESETPPPALTIRVCDSLSCELAGAQALKAALED--GLDPAQ--- 134

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP++ IG +  +  TP +++  I A      DT    P    +
Sbjct: 135 ---VRVLRAPCMGRCDTAPVLEIGHNHIDHATPAKVQAAIVA-----DDTHAHLPDYQTL 186

Query: 190 SSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218
           +S    GG   L    ++   +  +D  ++
Sbjct: 187 ASYCADGGYAVLEHLRAQGDWQAVQDKVLA 216


>gi|302037259|ref|YP_003797581.1| formate dehydrogenase subunit gamma [Candidatus Nitrospira
           defluvii]
 gi|300605323|emb|CBK41656.1| Formate dehydrogenase, gamma subunit [Candidatus Nitrospira
           defluvii]
          Length = 149

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V  ++++       S ++  L+  QEQ G V   A+  +A+ L +   +V  + ++Y 
Sbjct: 3   EQVKSILAK--VRSEPSNILKALLALQEQLGHVPTEAVPDIAHALGVTTAQVAGVLSYYP 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
             +L+  G R  ++VC    C   GC +L+   ++++        + G  + + + C G 
Sbjct: 61  DLRLTAPG-RHLIRVCMGESCYANGCGRLLRELQDRLRVDVGETAAGGKFTLDTMSCAGN 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C  +P VMI +D +  L P +L+ +++ + 
Sbjct: 120 CAVSPTVMIDRDLHGRLLPSQLDTLLERYK 149


>gi|296159982|ref|ZP_06842802.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. Ch1-1]
 gi|295889728|gb|EFG69526.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           sp. Ch1-1]
          Length = 161

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y  F+
Sbjct: 10  DQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P   +  VQ+C    C   G E L          +    +  G T+  E V C G C 
Sbjct: 68  TQPA-AQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHEHGATVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPALMLNGTLHARVTPQKFDAIFAA 152


>gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + A  ++ +++RYP  +    ++P+++   +++G++S  ++  +AN + M    V 
Sbjct: 74  TYNVDEAAGLDSILARYP--KHPQYLLPIIIEESDKKGYISDPSLVKIANHVQMHAPHVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134
            + + Y  F      +  HV +C    CM++G +K+++  + K   +  H   + +G  +
Sbjct: 132 SVISHYHFFPRKHT-SDTHVYLCRCHNCMMKGQKKVMQAIKEKYGVQDFHGSVSKNGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID-RI 189
           +  +   G CVN  P ++I   G D  E LT    + I ++ ++ +G T +         
Sbjct: 191 FHGMNWLGYCVNDGPAMLIKRTGGDYVETLTGLSGDNIEESLNSLKGKTYKWAKNNIVEQ 250

Query: 190 SSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           S    G   SLL+N+   +   KK  ++
Sbjct: 251 SLKSKGKEYSLLENHISVKDAIKKAVQM 278


>gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
 gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
          Length = 561

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P   +  +     V  ++   P  R    +I  L   Q   G +S A +  +A  + M+ 
Sbjct: 21  PKGRALLDGPWEEVRTLLGDRP--RRSDLLIEFLHLIQGAYGHLSAAHLRALAEEMRMSM 78

Query: 73  IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V EIATFY  F +            ++VC +  C L G ++L     + +        
Sbjct: 79  AEVYEIATFYAHFDVVKEDEAPPPALTIRVCDSLSCELAGAQQLKAALEDGLDASE---- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G    ++ T E++E  I A     GDT    P  + 
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHAHIDNATVEKVEAAIAA-----GDTHAHIPDYET 185

Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKDDKIS 218
             +    GG  +L D  +    +  +D  ++
Sbjct: 186 FDAYVAEGGYAALKDLRADGNWEDVQDKILA 216


>gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
 gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
          Length = 627

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ V++R+     +  ++ +L   QE+  W+S   +  VA    +   +V  +A FY  F
Sbjct: 23  VSAVLARHGADGTR--LMQILREIQEETEWLSPDILTRVAEGTRLPRGQVEGVAGFYHFF 80

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P+G    +     T   + G   L+     K+  KP   + DG +S +   C G C 
Sbjct: 81  HTEPLGRYRVLWSDNITD-RMAGNADLMARMCKKLWLKPGRVSEDGLVSVDTTSCTGLCD 139

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFS 173
             P +++       +T +R+++I++   
Sbjct: 140 QGPALLVNYRPITRMTAQRVDQIVELIR 167


>gi|225621402|ref|YP_002722661.1| NADH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225216223|gb|ACN84957.1| DH:ubiquinone oxidoreductase 24 kDa subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 168

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E+ A  +  ++S++  +  +  +I +    Q+  G+V R   + V+   ++   R+ EI 
Sbjct: 11  EDIADEIKSLVSKWKDA--EGNLIMICHGIQKHYGYVPRNVAKYVSEETNIPLARIYEIL 68

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEV 138
           TFY  F L P     ++ VC  T C L+G  +L+E  + K++ K   + ++D     EEV
Sbjct: 69  TFYNYFTLEPPAE-NNIAVCMGTACYLKGGGQLVEEIKRKLNLKGDQKYSADRKYKLEEV 127

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            C G C  AP++   ++    +  + + + I 
Sbjct: 128 RCIGCCGLAPVITFNEEVSGRVVIDDIAKFIK 159


>gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
 gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
          Length = 571

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 20/206 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      +++   V  ++   P  R    +I  L   Q++ G +S A I  +   + ++ 
Sbjct: 21  PKGRQLQDDAWDDVRSLLGSSPCQR--DLLIEYLHLIQDKFGHLSAAHIRALGEEMRISM 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             + E+ATFY  F +   G        ++VC +  C L G ++L       +  K     
Sbjct: 79  AEIYEVATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAQQLKVALEGGLDAKN---- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ IG +  +  TPE++   I A      DT       + 
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLEIGHNHIDHATPEKVLAAIAA-----QDTHAHVQDYEG 185

Query: 189 ISSAPA-GGLTSLLDNNSKKRGKKKK 213
             +  A GG  +L D       +  +
Sbjct: 186 FDAYAADGGYATLKDLRKNGNWEDVQ 211


>gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 608

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R    ++ +L  AQE  G++  AA+ ++A  + +   RV  +A FY+   L+PVG    
Sbjct: 18  RRDPGELVQILREAQEALGYLPAAALTLIARAVGVPRARVEGVAGFYSFLHLAPVGRYRV 77

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           +     T  ML G   L++   NK+  +    + DG +S +   C G C   P +++   
Sbjct: 78  LFSDNITDRML-GSGDLLDRLCNKLWIERGKLSEDGLVSVDTTSCTGMCDQGPALLVNGR 136

Query: 156 TYEDLTPERLEEIIDAFST 174
               ++ ER++ + +    
Sbjct: 137 AMTRMSAERIDRLCELIRA 155


>gi|187924995|ref|YP_001896637.1| NAD-dependent formate dehydrogenase, subunit gamma [Burkholderia
           phytofirmans PsJN]
 gi|187716189|gb|ACD17413.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           phytofirmans PsJN]
          Length = 161

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  ++++   V  + T+Y  F+
Sbjct: 10  DQLVERH--AQPGVSLLAVLHAIQDEVGYVPPAAVAPLARAMNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P      VQ+C    C   G E L +        +    +  G T+  E V C G C 
Sbjct: 68  TQPPAP-VTVQLCRAEACRSMGTEALAQHIEAHTGCRFDGEHQHGATVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPALMLNGTLHARVTPQKFDAIFAA 152


>gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 560

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P    +S+E+   V  V+   P  R +  +I  L   Q+  G +S   +  +A  + +  
Sbjct: 20  PKGRVYSDEALAAVRGVLGDRP--RRRDLLIEFLHLIQDACGHLSADHLAALAFEMKLGQ 77

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G        ++VC +  C L G E+L       +        
Sbjct: 78  AEVYETATFYAHFDVVKEGETPPPALTIRVCDSLSCELAGAEQLRAALEEGL-------- 129

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
             G +      C G C  AP++ +G +  +  TPE++   I A     GDT    P  + 
Sbjct: 130 DPGQVRVLRAPCMGRCDTAPVLELGHNHIDHATPEKVRAAIAA-----GDTHAHLPAYET 184

Query: 189 IS-SAPAGGLTSLLDNNSKKRGKKKKD 214
               A AGG   L    +    +  +D
Sbjct: 185 FDAYAAAGGYAVLKGLRAGGDWEAVQD 211


>gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus]
          Length = 604

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           +  ++ R    R +  +I +L   Q   G +    +  +A+ L+++ + +LE A+FY  F
Sbjct: 5   IKAILERNGSERTR--LIDILWDVQHLYGHIPDEVLPQLADELNLSPLDILETASFYHFF 62

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G +  + +  T    + G + + +    +   +    +  G     E  C G   
Sbjct: 63  HRKPSG-KYRIYLSDTVIAKMNGYQAVHDSLERETGARFGGTDKTGMFGLFETPCIGLSD 121

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
             P ++I    +  L P  + +II     G+       P
Sbjct: 122 QEPAMLIDNVVFTRLRPGTIVDIITQLRQGRSPEDIANP 160


>gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 319

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 94/207 (45%), Gaps = 9/207 (4%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           +++ + +  ++ ++++YP       ++P+++   +Q+G++S  ++  +A  +     +V 
Sbjct: 74  TYNADESAGLDSILAKYPD--HPQYLLPIVIEETDQKGYISDPSLVKIAKHVHPYPPQVE 131

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLS 134
            I + Y  F      +  HV +C    CM++G  K+++  + +     LH   + DG  +
Sbjct: 132 SILSHYHFFPRK-YTSDTHVYLCRCHNCMMKGQSKVMQALKERYGVDNLHSSVSRDGKFT 190

Query: 135 WEEVECQGACVN-APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           +  +   G CVN  P +M+   G D  E LT    + +  +    +G+  +         
Sbjct: 191 FHTMNWLGYCVNDGPAMMVKRRGGDYVEVLTGLTGDGVEQSLKGLKGNVFKWAKNKIVEQ 250

Query: 191 SAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +  A G  SL++NN   +    K  K+
Sbjct: 251 TLKAEGRYSLIENNVAVKDAVSKAVKM 277


>gi|87303136|ref|ZP_01085934.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
           WH 5701]
 gi|87282303|gb|EAQ74263.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Synechococcus sp.
           WH 5701]
          Length = 168

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E S   +  ++ R        A+I +L  AQ+   ++S   +  VA  L +   RV   A
Sbjct: 17  EASFAALEPLLLR--SQGRADALIEVLHGAQKLYSYLSDDLLRHVATRLQLPLSRVKGTA 74

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           +FY  F+  P   R    VC  T C ++G   LI      +  K   R  DG  S  EV 
Sbjct: 75  SFYHLFRFQPP-ARHRCVVCTGTACQIQGAPALIAAMEEGLGLKLGARRGDGWASLSEVR 133

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C G C +AP+V+I        TP  L   +   
Sbjct: 134 CLGTCSDAPLVLIDGTVGRQQTPAGLRRWLKEL 166


>gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
 gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
          Length = 603

 Score =  147 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
             +   F      W+++++ R+   R  + ++ +L   QE  G + + A+ V+A  L + 
Sbjct: 3   PDNDIRFDVSDLSWLDKLVMRH--GRDATRLLQILREIQESFGHIPQQAVSVLAAKLSIP 60

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
             R+  +A+FY+   L P G    +     T  ML G + L++     +  +P   + DG
Sbjct: 61  RSRIESVASFYSFLHLKPHGEYRVLFSDNITDRML-GSQDLMDQMCQLLWLQPGKVSEDG 119

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
            +S     C G C   P +++       +T +R++EI
Sbjct: 120 LVSIGTTSCTGMCDQGPALLVNGRAITRMTHQRVQEI 156


>gi|254252941|ref|ZP_04946259.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           dolosa AUO158]
 gi|124895550|gb|EAY69430.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           dolosa AUO158]
          Length = 166

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 10/152 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q++ G+V +  +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVERH--ARAGRSLVAILHAIQDEAGYVPQGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +    + D         ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAGHGDAASAHARADVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C  +P + +    +  +TPE+ + ++  
Sbjct: 126 CLGLCAQSPSMTVNGALHAKVTPEKFDALLAD 157


>gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 572

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        +   +  ++   P  R +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 26  PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 83

Query: 73  IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G  A     V+VC +  C + G E L+   + +I        
Sbjct: 84  AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187
             G +      C G C +AP   +G +     TPER++  + A     GDT    P  +D
Sbjct: 137 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKAAVAA-----GDTHPHIPDYVD 189

Query: 188 RISSAPAGGLTSL 200
             +   AGG  +L
Sbjct: 190 YDAYRAAGGYRTL 202


>gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 567

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        +   +  ++   P  R +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 21  PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLIQDTYGQISAPHLAALADEMGLAF 78

Query: 73  IRVLEIATFYTQFQLSPVGTRAH----VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G  A     V+VC +  C + G E L+   + +I        
Sbjct: 79  AEVFETATFYAHFDVVKEGEAAVPALTVRVCDSLTCAMHGAEALLATLQAEIG------- 131

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187
             G +      C G C +AP   +G +     TPER++  + A     GDT    P  +D
Sbjct: 132 --GPVRVVRAPCVGLCDHAPAAEVGHNFLPRATPERVKAAVAA-----GDTHPHIPDYVD 184

Query: 188 RISSAPAGGLTSL 200
             +   AGG  +L
Sbjct: 185 YDAYRAAGGYRTL 197


>gi|91784826|ref|YP_560032.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           xenovorans LB400]
 gi|91688780|gb|ABE31980.1| formate dehydrogenase gamma subunit [Burkholderia xenovorans LB400]
          Length = 161

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           ++++ R+  ++   +++ +L   Q++ G+V  AA+  +A  L+++   V  + T+Y  F+
Sbjct: 10  DQLVQRH--AQPGMSLLAVLHAIQDELGYVPPAAVAPLARALNLSRAEVHGVITYYHHFR 67

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACV 145
             P   +  VQ+C    C   G E L          +    +  G T+  E V C G C 
Sbjct: 68  TQPA-AQVTVQLCRAEACRSMGTEALARHIETHTGCRFDAEHQHGATVELESVYCLGQCA 126

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDA 171
            +P +M+    +  +TP++ + I  A
Sbjct: 127 LSPALMLNGTLHARITPQKFDAIFAA 152


>gi|167563644|ref|ZP_02356560.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
           EO147]
          Length = 157

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDEAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    +  G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 138

Query: 161 TPERLEEIIDA 171
           T ER + ++DA
Sbjct: 139 TAERFDALLDA 149


>gi|221632799|ref|YP_002522021.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
 gi|221155661|gb|ACM04788.1| putative NAD-reducing hydrogenase [Thermomicrobium roseum DSM 5159]
          Length = 182

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 26  VNEVIS-RYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +  ++  RY P   Q A   V+     AQ   GWV   A +++A  L +   RV  + TF
Sbjct: 17  LRRILEERYRPRDHQEAQELVVGACQEAQHLYGWVPPQAAQLIAEHLGVTINRVYGLLTF 76

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-C 140
           Y  F+  P G    + +C    C + G +K+++  R +         SDG L+    + C
Sbjct: 77  YADFRTEPPGEHF-LWLCHGAACYIAGSQKVVDALRTEYRLGEDGTTSDGLLTVHVFDGC 135

Query: 141 QGACVNAPMVMIG-KDTYEDLTPERLEEIIDAFST 174
            GAC  AP+  +   +    L   RL E+++    
Sbjct: 136 LGACDLAPVAQLDHHEYIGQLDANRLRELVEELRA 170


>gi|186475494|ref|YP_001856964.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           phymatum STM815]
 gi|184191953|gb|ACC69918.1| NAD-dependent formate dehydrogenase, gamma subunit [Burkholderia
           phymatum STM815]
          Length = 170

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 13/160 (8%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +A+  +E++ R+   +   +++ LL   Q+  G+V    +  +A  ++++   V  + T+
Sbjct: 5   NALAPDELVRRH--VQPGMSLVALLHAIQDDVGFVPPDTVAPLARTMNLSRAEVHGVITY 62

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ---------KPLHRNS-DG 131
           Y  F+ SP      VQ+C    C   G E L +    +               H ++ DG
Sbjct: 63  YHHFRQSPAAP-VTVQLCRAEACRSMGTEALAQHIEARTGCRFDAHKHGAHDGHDHACDG 121

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            +  E V C G C  +P +MI  + +  +TP++ + ++ A
Sbjct: 122 AVGLESVYCLGQCALSPAMMINGELHARVTPQKFDALLAA 161


>gi|325523855|gb|EGD02082.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia sp. TJI49]
          Length = 162

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 6/148 (4%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVERH--ARPGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGTLSWEEVECQGA 143
             P   R  +Q+C    C   GCE L E    +   +       +    ++ E V C G 
Sbjct: 67  TVPP-ARVTIQMCRAEACRSMGCEALAEHAEARTGCRFDAAHDASDPQAVALESVYCLGL 125

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C  +P + +    +  +TP++ + ++  
Sbjct: 126 CAQSPSMTVNGVLHAKVTPQKFDALLAD 153


>gi|332527762|ref|ZP_08403801.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
           JA2]
 gi|332112158|gb|EGJ12134.1| formate dehydrogenase subunit gamma [Rubrivivax benzoatilyticus
           JA2]
          Length = 136

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   V   I+R+     +  ++P+L   Q   G++ R A+  +A  L+++   V  + ++
Sbjct: 2   TQDIVASTIARH--QGREGPLLPILHELQHTLGYIPREALPRIAQALNLSRAEVHGVVSY 59

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Y  F+         +QVC    C   G ++L +  +     +            E V C 
Sbjct: 60  YHHFRTEKPTA-PVLQVCRAESCQAMGADRLWDHAQAHGGCQ-----------VEAVYCL 107

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEII 169
           G C ++P  M+G++    LTPE+L+E++
Sbjct: 108 GLCASSPAAMLGEEPLGRLTPEKLDEVL 135


>gi|167570806|ref|ZP_02363680.1| formate dehydrogenase, gamma subunit [Burkholderia oklahomensis
           C6786]
          Length = 154

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 18  SLVAILHAIQDEAGYVPSACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 76

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    +  G ++ E V C G C  +P + I  + +  +
Sbjct: 77  AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDELHAKM 135

Query: 161 TPERLEEIIDA 171
           T ER + ++DA
Sbjct: 136 TAERFDALLDA 146


>gi|83721159|ref|YP_442162.1| formate dehydrogenase subunit gamma [Burkholderia thailandensis
           E264]
 gi|257138351|ref|ZP_05586613.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           E264]
 gi|83654984|gb|ABC39047.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           E264]
          Length = 157

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    +  G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 139 SPERFDALFDA 149


>gi|118475092|ref|YP_891365.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414318|gb|ABK82738.1| hydrogenosomal NADH dehydrogenase 24 kda subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 163

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
            F F+ E    +NE+  +    R  + V+P L   Q  +G++    +  +   L +  + 
Sbjct: 2   KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGFIDAKDVLYLEKTLGIRSMF 59

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
             E   FY+ F     G +  ++ C T  C LRG ++LI+  ++ +  K    +SDG  S
Sbjct: 60  YAEAIGFYSMFNQKSKG-KFELKFCKTITCKLRGSDELIKFTQDILGIKMGETSSDGLFS 118

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
             E EC G C  AP ++   +  + L    +  +I+        +
Sbjct: 119 LGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKENASS 163


>gi|134295065|ref|YP_001118800.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia vietnamiensis G4]
 gi|134138222|gb|ABO53965.1| formate dehydrogenase gamma subunit [Burkholderia vietnamiensis G4]
          Length = 166

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139
            +P   R  +Q+C    C   GCE L E  + +   +    + D         ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCEALAEHAQARTGCRFDAAHGDAADPHAPPDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P + I    +  +TPE+ + ++   + 
Sbjct: 126 CLGLCAQSPSMTINGVLHAKVTPEKFDALLAQAAA 160


>gi|167581038|ref|ZP_02373912.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           TXDOH]
          Length = 157

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    +  G ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 139 SPERFDALFDA 149


>gi|126640813|ref|YP_001083797.1| NADH dehydrogenase I chain E [Acinetobacter baumannii ATCC 17978]
          Length = 112

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A +L ++   +  +ATFY +    PVG R  + +C +  C L G E L E  + ++
Sbjct: 1   MNAIAQLLTISVADLEGVATFYNRIYRQPVG-RHVILLCDSIACFLMGAETLAEAFQREL 59

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
             +      DG  +   + C G C   P +MI +DT+  +    ++++++ +
Sbjct: 60  GIQFGQTTQDGRFTLLPICCLGNCDKGPTLMIDEDTHGLVEVTSIKQLLEKY 111


>gi|167619116|ref|ZP_02387747.1| formate dehydrogenase, gamma subunit [Burkholderia thailandensis
           Bt4]
          Length = 151

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A IE +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 15  SLVAILHAIQDDAGYVPPACIEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 73

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    +  G ++ E V C G C  +P + I  + +  +
Sbjct: 74  AEACRSMGGEALVAHAQARAGCRIDGEHG-GEVALESVYCLGLCAQSPSLTINDEPHAKM 132

Query: 161 TPERLEEIIDA 171
           +PER + + DA
Sbjct: 133 SPERFDALFDA 143


>gi|206561320|ref|YP_002232085.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           cenocepacia J2315]
 gi|198037362|emb|CAR53295.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia J2315]
          Length = 166

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q   G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVGRH--ARAGRSLVAILHAIQNDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-------TLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +    + D         ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPHAPDDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C  +P + +    +  +TPE+ + ++  
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157


>gi|53720138|ref|YP_109124.1| NAD-dependent formate dehydrogenase subunit gamma [Burkholderia
           pseudomallei K96243]
 gi|254295607|ref|ZP_04963065.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           406e]
 gi|52210552|emb|CAH36535.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei K96243]
 gi|157805546|gb|EDO82716.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           406e]
          Length = 171

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 35  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 93

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + +  +
Sbjct: 94  AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 152

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 153 SPARFDALFDA 163


>gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 561

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 23/209 (11%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RRL + + +P            +  ++   P  R    +I  L + Q+  G VS   I  
Sbjct: 14  RRLGKPKGRPV----DAHVLEEIQRLLGAEP--RRADLLIEHLHKIQDHYGHVSARHIAA 67

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           +A  + ++   V E+ATFY  F +   G        V+VC +  C + G   L+   ++ 
Sbjct: 68  LAFEMKLSQAEVYEVATFYHHFDVVAEGESPPPPLTVRVCESLSCAMAGAHALMPALKDA 127

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           + +          +  + V C G C +AP+ ++G++  +  TP  +   ++   T     
Sbjct: 128 LGEG---------VRIQPVPCVGRCQHAPVAVVGQNPVDRATPAAVSAAVEQGQTL---- 174

Query: 180 IRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             P       +    GG     D  S  R
Sbjct: 175 PAPAAYRSYAAYQADGGYQLYQDCRSGHR 203


>gi|254181074|ref|ZP_04887672.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1655]
 gi|184211613|gb|EDU08656.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1655]
          Length = 157

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           +  ++   +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P   
Sbjct: 13  HAHAQPGRSLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-A 71

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              +++C    C   G E L+   + +   +    + D  ++ E V C G C  +P + I
Sbjct: 72  HVTIRLCRAEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTI 130

Query: 153 GKDTYEDLTPERLEEIIDA 171
             + +  ++P R + + DA
Sbjct: 131 NDEPHAKMSPARFDALFDA 149


>gi|170732344|ref|YP_001764291.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia MC0-3]
 gi|254246010|ref|ZP_04939331.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia PC184]
 gi|124870786|gb|EAY62502.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           cenocepacia PC184]
 gi|169815586|gb|ACA90169.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia MC0-3]
          Length = 166

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 12/153 (7%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--------RNSDGTLSWEEV 138
            +P   R  +Q+C    C   GCE L      +   +           R  D  ++ E V
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPD-DVALESV 124

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C  +P + +    +  +TPE+ + ++  
Sbjct: 125 YCLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157


>gi|167895369|ref|ZP_02482771.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 7894]
 gi|167919994|ref|ZP_02507085.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei BCC215]
          Length = 157

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 139 SPARFDALFDA 149


>gi|78065618|ref|YP_368387.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia sp.
           383]
 gi|77966363|gb|ABB07743.1| formate dehydrogenase gamma subunit [Burkholderia sp. 383]
          Length = 166

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 10/155 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DALVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLARALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +           ++ G ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCEALAAHAEARTGCRFDAAHGDAADAHAPGDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P + +    +  +TPE+ + ++   + 
Sbjct: 126 CLGLCAQSPSLTVNGVLHARVTPEKFDALLAEAAA 160


>gi|167903756|ref|ZP_02490961.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei NCTC 13177]
          Length = 146

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 10  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 68

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + +  +
Sbjct: 69  AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 127

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 128 SPARFDALFDA 138


>gi|126454394|ref|YP_001067206.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           1106a]
 gi|167720686|ref|ZP_02403922.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei DM98]
 gi|167846782|ref|ZP_02472290.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei B7210]
 gi|237813330|ref|YP_002897781.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242316557|ref|ZP_04815573.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106b]
 gi|254195622|ref|ZP_04902049.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           S13]
 gi|126228036|gb|ABN91576.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106a]
 gi|169652368|gb|EDS85061.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           S13]
 gi|237504647|gb|ACQ96965.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242139796|gb|EES26198.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1106b]
          Length = 157

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGEHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 139 SPARFDALFDA 149


>gi|53724802|ref|YP_102257.1| formate dehydrogenase subunit gamma [Burkholderia mallei ATCC
           23344]
 gi|67642931|ref|ZP_00441682.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei GB8 horse 4]
 gi|76809699|ref|YP_334388.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 1710b]
 gi|121599593|ref|YP_993893.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
 gi|124386153|ref|YP_001026954.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
           10229]
 gi|126441142|ref|YP_001059918.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           668]
 gi|126449103|ref|YP_001079758.1| formate dehydrogenase, gamma subunit [Burkholderia mallei NCTC
           10247]
 gi|134277771|ref|ZP_01764486.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           305]
 gi|166999709|ref|ZP_02265543.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei PRL-20]
 gi|167739671|ref|ZP_02412445.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 14]
 gi|167830054|ref|ZP_02461525.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 9]
 gi|167912019|ref|ZP_02499110.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 112]
 gi|217420553|ref|ZP_03452058.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           576]
 gi|226197898|ref|ZP_03793472.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|254177027|ref|ZP_04883684.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|254192273|ref|ZP_04898762.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254203942|ref|ZP_04910302.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
 gi|254208922|ref|ZP_04915270.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
 gi|254262013|ref|ZP_04953067.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1710a]
 gi|254360023|ref|ZP_04976293.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
           2002721280]
 gi|52428225|gb|AAU48818.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           23344]
 gi|76579152|gb|ABA48627.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 1710b]
 gi|121228403|gb|ABM50921.1| formate dehydrogenase, gamma subunit [Burkholderia mallei SAVP1]
 gi|124294173|gb|ABN03442.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei NCTC 10229]
 gi|126220635|gb|ABN84141.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           668]
 gi|126241973|gb|ABO05066.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei NCTC 10247]
 gi|134251421|gb|EBA51500.1| formate dehydrogenase, gamma subunit [Burkholderia pseudomallei
           305]
 gi|147745454|gb|EDK52534.1| formate dehydrogenase, gamma subunit [Burkholderia mallei FMH]
 gi|147750798|gb|EDK57867.1| formate dehydrogenase, gamma subunit [Burkholderia mallei JHU]
 gi|148029263|gb|EDK87168.1| formate dehydrogenase, gamma subunit [Burkholderia mallei
           2002721280]
 gi|157987468|gb|EDO95244.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698068|gb|EDP88038.1| formate dehydrogenase, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|217395965|gb|EEC35982.1| formate dehydrogenase family protein [Burkholderia pseudomallei
           576]
 gi|225930086|gb|EEH26099.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|238524151|gb|EEP87586.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064207|gb|EES46393.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           mallei PRL-20]
 gi|254220702|gb|EET10086.1| formate dehydrogenase, NAD-dependent, gamma subunit [Burkholderia
           pseudomallei 1710a]
          Length = 157

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C   G E L+   + +   +    + D  ++ E V C G C  +P + I  + +  +
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKM 138

Query: 161 TPERLEEIIDA 171
           +P R + + DA
Sbjct: 139 SPARFDALFDA 149


>gi|107022111|ref|YP_620438.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like [Burkholderia
           cenocepacia AU 1054]
 gi|116689056|ref|YP_834679.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia cenocepacia HI2424]
 gi|105892300|gb|ABF75465.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647145|gb|ABK07786.1| formate dehydrogenase gamma subunit [Burkholderia cenocepacia
           HI2424]
          Length = 166

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A +L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--ARAGRSLVAILHAIQDDAGYVPPGCVAPLAKVLNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH--------RNSDGTLSWEEV 138
            +P   RA +Q+C    C   GCE L      +   +           R  D  ++ E V
Sbjct: 67  TAPP-ARATIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDAAAPRTPD-DVALESV 124

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C G C  +P + +    +  +TPE+ + ++  
Sbjct: 125 YCLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157


>gi|218514552|ref|ZP_03511392.1| NADH-ubiquinone oxidoreductase protein, chain E [Rhizobium etli
           8C-3]
          Length = 115

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + E  +RYP  R  SA++P L  AQ + G +    +E VANIL +  I V E+ATFY
Sbjct: 4   REKIEEAAARYPDQR--SAIMPALRIAQTEHGHLPGPVLEEVANILGVERIWVYELATFY 61

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           T F   PVG   H+Q+C    CML   E L+      +  K      D   + 
Sbjct: 62  TLFHTEPVGM-FHLQLCDNVSCMLCRSEDLLRHLEEVLGIKEGETTPDRLFTL 113


>gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
 gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens]
 gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
          Length = 572

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        + + + E++   P  R +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 25  PKGRQVDPHAKVEIEELLGTRP--RQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G     R  ++VC +  C + G ++L+E  + ++        
Sbjct: 83  AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C +AP V +G +         +   ++A      DT    P    
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +  AGG  + L+    + G+   DD +
Sbjct: 190 YDAYRAGGGYATLER--LRSGELPVDDVL 216


>gi|238026516|ref|YP_002910747.1| formate dehydrogenase subunit gamma [Burkholderia glumae BGR1]
 gi|237875710|gb|ACR28043.1| Formate dehydrogenase, gamma subunit [Burkholderia glumae BGR1]
          Length = 162

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
            + ++SR+   R   +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F
Sbjct: 8   ADALVSRH--VRAGRSLVAILHAIQDEAGYVPEGCVPPLAKALNLSRAEVHGVLTYYHHF 65

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIH--QKPLHRNSDGTLSWEEVECQGA 143
           + +P   R  +Q+C    C   G E L+E  + +        H   +G ++ E V C G 
Sbjct: 66  RTTPP-ARVTIQLCRAEACRSLGGEALVEHAQARTGCRIDAGH---NGDVALESVYCLGF 121

Query: 144 CVNAPMVMIGKDTYEDLTPERL 165
           C  +P  MI  + +  L+P R 
Sbjct: 122 CAQSPSAMINGEPHARLSPARF 143


>gi|167837457|ref|ZP_02464340.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           thailandensis MSMB43]
          Length = 157

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P   R  +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIRLCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIH--QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
              C   G E L+   + +        H    G ++ E V C G C  +P + I  + + 
Sbjct: 80  AEACRSMGGEALVAHAQARAGCRIDGGH---GGEVALESVYCLGLCAQSPSLTINDEPHA 136

Query: 159 DLTPERLEEIIDA 171
            ++P R + + DA
Sbjct: 137 KMSPARFDALFDA 149


>gi|161525534|ref|YP_001580546.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349738|ref|YP_001945366.1| formate dehydrogenase subunit gamma [Burkholderia multivorans ATCC
           17616]
 gi|221213581|ref|ZP_03586555.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD1]
 gi|160342963|gb|ABX16049.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia multivorans ATCC 17616]
 gi|189333760|dbj|BAG42830.1| formate dehydrogenase gamma subunit [Burkholderia multivorans ATCC
           17616]
 gi|221166370|gb|EED98842.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD1]
          Length = 166

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
             ++ R+  +R   +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   EALVERH--ARAGRSLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L E  + +   +         H ++   ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           C G C  +P + +    +  +TPE+ + ++       G+ 
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAVAHAGEA 165


>gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
 gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
          Length = 572

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        + + + E++     SR +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 25  PKGRQVDPHAKVEIEELLGT--RSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G     R  ++VC +  C + G ++L+E  + ++        
Sbjct: 83  AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C +AP V +G +         +   ++A      DT    P    
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +  AGG  + L+    + G+   DD +
Sbjct: 190 YDAYRAGGGYATLER--LRSGELSVDDVL 216


>gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB]
 gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Dechloromonas aromatica RCB]
          Length = 632

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E  A  V+ V++RY   R  + ++ +L   QE   W+S  AI+ +   L +   ++  +A
Sbjct: 9   EAVAGVVDRVVARY--HRDPTCMVQILREVQEVCDWISPEAIDRMQVTLGVPRTKIEGVA 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FY  F   P G    +     T  ML G + +++   N +  +    + DG +S  +  
Sbjct: 67  GFYAFFYTEPRGKYRVLFSDNITDRML-GSKAMMDRLCNSLWVERGKVSEDGLVSVAQTA 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
           C G C   P ++I       LT ER++EI      G+       P  
Sbjct: 126 CTGMCDQGPALLINNYAIAGLTAERIDEI-AELIRGKVPLAEWPPAY 171


>gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium radiotolerans JCM 2831]
          Length = 572

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 23/210 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        + + + E++     SR +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 25  PKGRQVEPRAKVEIEELLGS--RSRQRDLLIEHLHLIQDTFGQISAEHLAALADEMALAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G     R  V+VC +  C + G ++L+E  + ++        
Sbjct: 83  AEVFETATFYAHFDVVKEGDAAIPRLTVRVCDSITCAMFGADELLETLQRELASDA---- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187
               +      C G C +AP V +G +         +   ++A     GDT    P  +D
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHKADLASVRAAVEA-----GDTHAHVPDYVD 189

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +   AGG  +L   +  + G    DD +
Sbjct: 190 YDAYRAAGGYATL---DRLRSGDLPVDDIL 216


>gi|172059964|ref|YP_001807616.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MC40-6]
 gi|171992481|gb|ACB63400.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MC40-6]
          Length = 166

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +           ++ G ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCESLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C G C  +P + +    +  +TPE+ + ++  
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLAD 157


>gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium sp. 4-46]
          Length = 572

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 24/210 (11%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        +   +  ++   P  R +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 26  PKGRQVDPRAKAEIAALLGEAP--RRRDLLIEHLHLVQDTYGQISAPHLAALADEMGLAF 83

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G  A     V+VC +  C + G E+L+   + +I        
Sbjct: 84  AEVFETATFYAHFDVVKEGEAAIPALTVRVCDSLTCAMHGAEELLAALQAEIG------- 136

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ-ID 187
               +      C G C +AP   +G +     T E +   + A     GDT    P  ID
Sbjct: 137 --AQVRVVRAPCVGLCDHAPAAEVGHNFLHRATVETVRAAVAA-----GDTHAHLPDTID 189

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +   AGG  +L      + G    +D +
Sbjct: 190 FDAYRDAGGYRTL---ERLRAGDLSVEDVL 216


>gi|188997421|ref|YP_001931672.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932488|gb|ACD67118.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 160

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            + E    + E    +     +  +I  L     +   +S   +  ++N L++   ++  
Sbjct: 6   LTPEIINKIEEYKKEFLT--KEQVIIQALHLIYSKSRDISLDHMLELSNYLEVPLNQIER 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           I +FY  F++     R H++VC   PC + GC+KLIE+      ++    + +G    E 
Sbjct: 64  IVSFYDMFRVK-RNARHHIRVCKNLPCHIMGCKKLIELFEKLTCEERNQESKNGRFYIET 122

Query: 138 VECQGACVNAPMVMIGKDTYE--DLTPERLEEIIDAF 172
           VEC GAC  AP  MI  D Y+   +T E+L EI+  +
Sbjct: 123 VECIGACSVAPAFMIDDDLYDGTKITEEKLNEILSKY 159


>gi|115350951|ref|YP_772790.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria AMMD]
 gi|115280939|gb|ABI86456.1| formate dehydrogenase gamma subunit [Burkholderia ambifaria AMMD]
          Length = 166

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 10/155 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +           ++ G ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGAAAHAPGDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           C G C  +P + +    +  +TPE+ + ++   +T
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKFDALLADAAT 160


>gi|87198756|ref|YP_496013.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134437|gb|ABD25179.1| formate dehydrogenase gamma subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 137

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              + ++I+ +  +  Q A++P+L   Q   G VS  AI  VA+ L+++   V  + +FY
Sbjct: 1   MERLEQIIASH--AGRQGALLPILHDVQAAFGHVSEDAIRAVASALNLSRADVFGVVSFY 58

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
             F+ SP   RA +++C    C  RG E L     +  H K            E V C G
Sbjct: 59  HDFRQSPE-PRAVLKLCRAEACQARGVEALAAQLPDNPHVK-----------IEAVYCLG 106

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C   P  M     +  L   +L  ++++ +
Sbjct: 107 LCSVGPNAMAEGKVHARLDASKLGALVESLA 137


>gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodoferax ferrireducens T118]
 gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodoferax ferrireducens T118]
          Length = 603

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 4/151 (2%)

Query: 25  WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
            +  +++RYPP     A++ +L   Q  +GW++  A+  VA+ L +   +V  +A FY  
Sbjct: 14  ELQRLLARYPPD--PHALLQILRELQALQGWLAPDALGQVASELGLTLAQVQGVAGFYRF 71

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
               PVG    V         L G E L+     ++   P   + DG +S E   C G C
Sbjct: 72  LHTRPVGA-YRVLFSDNVTDRLLGSEALLADLCQRLGVVPGQLSFDGLVSVERTSCTGLC 130

Query: 145 VNAPMVMIGKD-TYEDLTPERLEEIIDAFST 174
              P ++I        L P R+  + +    
Sbjct: 131 DQGPALLINHHQVLTRLDPARVAHMAELIRA 161


>gi|148554395|ref|YP_001261977.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
           wittichii RW1]
 gi|148499585|gb|ABQ67839.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Sphingomonas
           wittichii RW1]
          Length = 159

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 3/146 (2%)

Query: 18  FSEESAIWVNEVISRYPPSR--CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
            + E    V  +++R   ++   + A++PLL   QE+ G+V    +  VA  ++++   V
Sbjct: 1   MTMERREPVEAMVARLLAAQGERRGALLPLLHDLQEELGFVGEETVAAVAAAMNLSRAEV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + +FY  F+ +P G R  V+ C    C  RG   +     +++        +DG ++ 
Sbjct: 61  HGVVSFYHDFRKAPAG-RHVVKYCRAESCRSRGGVAIEAALADRLRVTMGETRADGQVTL 119

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLT 161
           E V C G C   P  ++       + 
Sbjct: 120 EPVYCLGLCAIGPNALVDGAPVARID 145


>gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta
           [Methylobacterium extorquens DM4]
 gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium extorquens PA1]
 gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens DM4]
          Length = 572

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        + + + E++     SR +  +I  L   Q+  G +S   +  +A+ + +A+
Sbjct: 25  PKGRQVDPHAKVEIEELLGT--RSRQRDLLIEHLHLIQDTYGQISADHLAALADEMSLAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G     R  ++VC +  C + G ++L+E  + ++        
Sbjct: 83  AEVFETATFYAHFDVVKEGEADIPRLTIRVCDSITCAMFGADELLETLQRELASDA---- 138

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C +AP V +G +         +   ++A      DT    P    
Sbjct: 139 ----VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA-----EDTHAHIPTYVD 189

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +  AGG  + L+    + G+   DD +
Sbjct: 190 YDAYRAGGGYATLER--LRSGELPVDDVL 216


>gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
 gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
          Length = 572

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 26/211 (12%)

Query: 3   VRRLAEE-------EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGW 55
           VRR A            P       ++ + +  ++     SR +  +I  L   Q+  G 
Sbjct: 8   VRRFAHPGRGRNVARGVPKGRQVDPQAKVEIEGLLGT--RSRQRDLLIEHLHLVQDTYGQ 65

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEK 111
           +S   +  +A+ + +A+  V E ATFY  F +   G     R  V+VC +  C + G + 
Sbjct: 66  ISADHLAALADEMSLAFAEVFETATFYAHFDVVKEGEANIPRLTVRVCDSITCAMFGADA 125

Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           L+E  + ++            +      C G C +AP V +G +         +   ++A
Sbjct: 126 LVETLQRELASDA--------VRVVRAPCVGLCDHAPAVEVGHNFLHRADLASVRAAVEA 177

Query: 172 FSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
                 DT    P      +  AGG    L+
Sbjct: 178 -----EDTHAHIPDYVEYDAYRAGGGYVTLE 203


>gi|260886838|ref|ZP_05898101.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
           35185]
 gi|330839359|ref|YP_004413939.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260863437|gb|EEX77937.1| NADH-quinone oxidoreductase, E subunit [Selenomonas sputigena ATCC
           35185]
 gi|329747123|gb|AEC00480.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 163

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANI 67
              P S      +   ++ V+  +     Q  ++ +L+  Q+  +  +V   A   VA  
Sbjct: 2   NADPKSLEL--ATREKIDRVLEAHSYDPTQ--IVGILLDVQDLFERHYVPEPAAYYVAEK 57

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           L +    + +  TFY      P   +  +QVC +  C +   E L    ++ +       
Sbjct: 58  LPLKISLIYDCLTFYASLSPVPR-AKYPIQVCDSVVCRINENETLFSALKSLLGIDVGEV 116

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLT-PERLEEIIDAFS 173
             DG  + E+  C GAC  AP V +  + Y  L   E++EE++    
Sbjct: 117 TYDGRFTLEKTPCFGACDIAPAVRVNGEVYGHLDSREKIEELLHTLQ 163


>gi|221201246|ref|ZP_03574286.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2M]
 gi|221206300|ref|ZP_03579313.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2]
 gi|221173609|gb|EEE06043.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2]
 gi|221179096|gb|EEE11503.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           multivorans CGD2M]
          Length = 166

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q++ G+V    +  +A  L+++   V  + T+Y  F+ +P   R  +Q+C 
Sbjct: 21  SLVAILHAIQDEVGYVPPGCVAPLAKALNLSRAEVHGVLTYYHHFRTAPP-ARVTIQMCR 79

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKP-------LHRNSDGTLSWEEVECQGACVNAPMVMIG 153
              C   GCE L E  + +   +         H ++   ++ E V C G C  +P + + 
Sbjct: 80  AEACRSMGCEALAEHAQTRTGCRFDAAHDDAAHASAPPAVALESVYCLGLCAQSPSMTVN 139

Query: 154 KDTYEDLTPERLEEIIDAFSTGQGDT 179
              +  +TPE+ + ++       G+ 
Sbjct: 140 GVLHAKVTPEKFDALLADAVAHAGEA 165


>gi|170698429|ref|ZP_02889502.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria IOP40-10]
 gi|170136682|gb|EDT04937.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria IOP40-10]
          Length = 166

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +R   +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--ARAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-------GTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +    + D       G ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGDGADAHAPGDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERL 165
           C G C  +P + +    +  +TPE+ 
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKF 151


>gi|110589188|gb|ABG77103.1| NADH dehydrogenase I E subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 123

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 2/107 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           FS E    ++  +++YP    QSAV+  L   Q+  G W++ A ++ VA  LDMA I V 
Sbjct: 13  FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVAAYLDMAPIAVY 72

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           E+ATFY+ ++L PVG +  + +C    CM+   ++++E    ++   
Sbjct: 73  EVATFYSMYELKPVG-KHKICICTNVSCMINNSDRIVEHLEKRLGIG 118


>gi|312795434|ref|YP_004028356.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167209|emb|CBW74212.1| NAD-dependent formate dehydrogenase gamma subunit (fdsG) (EC
           1.2.1.2) [Burkholderia rhizoxinica HKI 454]
          Length = 192

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 28  EVISRYPPSRCQS----AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
            +++ +  +  ++    +++ +L   Q+  G++  + I  +A  ++++   V  + T+Y 
Sbjct: 21  RLVAHHTSAAARAVPGHSLLSVLHAIQDDAGYIPDSVIAPLAQAMNLSRAEVHGVITYYH 80

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGT--------- 132
            F+ SP      VQ+C    C   G E L      +   +        D           
Sbjct: 81  HFRTSPPAA-VTVQLCRAESCRAMGSEALARHAETRTGHRFDACRHGDDHRAAPPAAPLA 139

Query: 133 ----LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
               +  +   C G C  +P +M+    Y  +TPE+L+ ++ A
Sbjct: 140 GHPAVELQSAYCLGLCSTSPAMMVNGKPYARVTPEKLDTVLAA 182


>gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
 gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
          Length = 626

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           ++ ++  +  S   ++++ +L+ AQE  G++   AI+ +++ L +    +  +A+FY+  
Sbjct: 12  LDPILRHH--SHNPNSLLQILIGAQEIHGFIHADAIDYLSSALKLPRAMIEGVASFYSFL 69

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            LSP G    +     T   + G + L++   +++  +P   + DG L      C G C 
Sbjct: 70  YLSPHGEYRVLFSDNITD-RMAGNQNLMQRLCSQLWVEPGKASEDGLLWVNTTSCTGMCD 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             P +++       LT ++++ I +    
Sbjct: 129 QGPAMLVNNIAINRLTQDKVDRICELIRE 157


>gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mesorhizobium sp. BNC1]
 gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chelativorans sp. BNC1]
          Length = 557

 Score =  138 bits (348), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 20/204 (9%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M  RR    +  P   +  + +   V  ++      R +  +I  L   Q++ G +S   
Sbjct: 3   MQERR--PRDRGPKGRALDDAALAEVRTLLGT--RERRRDLLIEFLHLIQDRYGCLSARH 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVC 116
           +  +A  + ++   V E+ATFY  F +   G  A     ++VC +  CML G E LI   
Sbjct: 59  LRALAEEMRLSQAEVYEVATFYDHFDVVKEGEAAPPALTIRVCDSVSCMLAGAETLIAEL 118

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           +      P        +      C G C  AP   +G    +  T E    ++   + G+
Sbjct: 119 QA--GADP------AAIRIMRAPCMGRCAGAPAARVGDREVDGATAE---GLLGMAAAGE 167

Query: 177 GDTIRPGPQIDRISSAPAGGLTSL 200
                P   I   +   AGG   L
Sbjct: 168 TGVKVPE-YIGLDAYRGAGGYQLL 190


>gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 603

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 11/189 (5%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             +  V+ R+     +  ++ +L   Q   G +    +  VA  L+   + ++E A+FY 
Sbjct: 3   ADIETVLRRHRYDGTR--LLDILWDIQHLFGHIPDEHLPQVATALNRTVLDIVETASFYH 60

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F  +P G R  + +  T    + G + + +    +   +    +  G     E  C G 
Sbjct: 61  FFHTTPSG-RHRIYLSNTVIAKMNGYQAVHDALELETGARFGGTDEAGMFGLFETACIGL 119

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT---SL 200
               P +++    +  LTP  + +I+     G+       P     +  P  G+    +L
Sbjct: 120 SDQEPAMLLDGVVFTRLTPGTVADIVAQLKAGRVAADIVNP-----AGLPEDGIAYIDTL 174

Query: 201 LDNNSKKRG 209
           +++  + RG
Sbjct: 175 VESTVRTRG 183


>gi|171316164|ref|ZP_02905388.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MEX-5]
 gi|171098673|gb|EDT43468.1| NADH-ubiquinone oxidoreductase 24 kD subunit-like protein
           [Burkholderia ambifaria MEX-5]
          Length = 166

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 27  NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
           + ++ R+  +    +++ +L   Q+  G+V    +  +A  L+++   V  + T+Y  F+
Sbjct: 9   DVLVERH--AHAGRSLVAILHAIQDDAGYVPAGCVAPLAKALNLSRAEVHGVLTYYHHFR 66

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSD----GTLSWEEVE 139
            +P   R  +Q+C    C   GCE L      +   +        +D    G ++ E V 
Sbjct: 67  TAPP-ARVTIQMCRAEACRSMGCETLAAHAEARTGCRFDAAHGEGADAHAPGDVALESVY 125

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERL 165
           C G C  +P + +    +  +TPE+ 
Sbjct: 126 CLGLCAQSPSMTVNGVLHAKVTPEKF 151


>gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 558

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 19/201 (9%)

Query: 6   LAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           L+ +  QP      + +   V  ++   P  R +  +I  L + Q+  G +    +  +A
Sbjct: 7   LSRKPSQPKGRQLEDAALTEVQALLGEEP--RRRDLLIEHLHKIQDAYGCLEARRLRALA 64

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIH 121
             + ++   V E+A+FY  F +   G        V+VC +  C L+G + L     +   
Sbjct: 65  EEMRLSQAEVYEVASFYHHFDIVREGEVKPAPVTVRVCDSITCSLKGADALAASLES--G 122

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             P        +  ++V C G C  AP   +GK   +      +  ++      +G    
Sbjct: 123 VDPS------KVRIQKVPCIGRCAAAPAAQVGKRAVDHANEMSVRSLL-----FEGTVAP 171

Query: 182 PGPQIDRISSAPAGGLTSLLD 202
             PQ     +  A G   +L+
Sbjct: 172 DIPQYTGFEAYRASGGYKVLE 192


>gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 641

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  + Q  ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 75  YNSNEAAGLDEILAKYP--KEQEYLLPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIDS 132

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135
           I + Y  F      + AHV +C    CM++G  +L++  +              DG+ + 
Sbjct: 133 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 191

Query: 136 EEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187
             +   G CVN AP +MI +      +T+  L  + +++ + A    + +  + P   I 
Sbjct: 192 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRLKALKDLKKELPKWPKNNIK 251

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKK 213
            + S   G   S ++  +      KK
Sbjct: 252 EMRSQRDGNGYSCMNTQAPIAEATKK 277


>gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
 gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
          Length = 537

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 18/199 (9%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   V +++   P  R +  +I  L + Q+    +S A +  +A+ + ++   V E+A+F
Sbjct: 2   ALEEVQKLLQDEP--RRRDLLIEHLHKIQDAYDHLSAAHLRALADEMRLSQAEVYEVASF 59

Query: 82  YTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           Y  F +   G  A     ++VC +  C L+G + L +V                 +  ++
Sbjct: 60  YHHFDIVKEGQAAPAPLTIRVCDSVACSLKGADSLAKVL--------GETLDPAKIRIQK 111

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGL 197
           V C G C +AP V +GK   ++ +   ++  +     G  +   P   ++  +    GG 
Sbjct: 112 VPCIGRCASAPTVQVGKRAVDNASELSVKAAV---FEGASEAEVPA-YVNLEAYRKDGGY 167

Query: 198 TSLLDNNSKKRGKKKKDDK 216
             L D  S K G     D+
Sbjct: 168 QKLEDVRSGKVGALDIADQ 186


>gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
 gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Nitrosospira multiformis ATCC 25196]
          Length = 598

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            +    +  +  R+     +  ++ +L+  QE   ++   AI  +A  L++  + V   A
Sbjct: 8   PDIEQQIAIICQRHGCEPHR--LLQILIDVQEMYCFIPPEAITFIARHLNLPRVNVEGAA 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FY+   L P G R  V         + G E+L+    N++  +P   + DG +S     
Sbjct: 66  GFYSFLSLEPAG-RYRVLFSDNVTDRMLGNEELMRHFCNRLWLEPGKVSEDGLISTNFTS 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
           C G C   P  +I       L+ ER++ I D
Sbjct: 125 CTGMCDQGPTALINGWPVTRLSKERIDLIAD 155


>gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Shewanella woodyi ATCC 51908]
          Length = 562

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 30/210 (14%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     SE +   V ++I   P  R    +I  L R Q+  G +S   I+ +A+ L++  
Sbjct: 21  PKGRQLSEGAFNEVQQLIKDMPLRR--DLLIEYLHRVQDTFGHLSAPHIKALADHLNIGE 78

Query: 73  IRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F L   G        ++VC +  C + G ++L +     +        
Sbjct: 79  AEVYEVASFYAHFDLIKEGQTPPPATTLRVCNSLSCTMAGADELADELNKTL-------- 130

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            +  +      C G C  AP V +G++  +  TP +L++ I                   
Sbjct: 131 DNQEVRVLRAPCMGRCNTAPTVALGRNHIDHATPAKLQQAI----------------SSN 174

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
             +AP     SL D  +    +  +  K S
Sbjct: 175 AFTAPIPCYQSLTDYLAGGGYQFYEQMKAS 204


>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 1198

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  R    ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 632 YNPNEAAGLDEILAKYPKERE--YLLPIIIEEHDKKGYISDPSIVKISEYLGMYPAQIDS 689

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSW 135
           I + Y  F      + AHV +C    CM++G  +L++  +              DG+ + 
Sbjct: 690 ILSSYHYFPREHT-SDAHVYMCTCHNCMMKGQGRLLKTIQETYDINKTHGGVAKDGSFTL 748

Query: 136 EEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187
             +   G CVN AP +MI +      +T+  L  + +++   A    + +  + P   I 
Sbjct: 749 HTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLEDNIDQRRKALKDLKKELPKWPKNNIK 808

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKK 213
            + S   G   S ++  +      KK
Sbjct: 809 EMRSQRDGNGYSCMNTQAPIAEATKK 834


>gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 570

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 18/189 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      + +   V  ++      R    +I  L   Q++   +S A I  +A  + ++ 
Sbjct: 18  PKGRQLDDGALANVRALLGDRKIQRDH--LIEYLHLIQDEYKCLSAAHIRALAEEMRLSQ 75

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
           + V E+A+FY  F +   G        ++VC +  CM+ G E L                
Sbjct: 76  VEVYEVASFYDHFDVVKEGEPEPAPLTIRVCDSITCMMMGAEALHAGLE--TGIDRN--- 130

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C GAC  AP   IG     + T   ++ ++    +G+   + P    D 
Sbjct: 131 ---AVRVVHAPCMGACDVAPAARIGDREVGNAT---VDGLLAMVESGEIGVLTP-DYKDL 183

Query: 189 ISSAPAGGL 197
            +    GG 
Sbjct: 184 AAYRAEGGY 192


>gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 559

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           M+VR L   +  P      E +   + E++      R +  +I  L   Q++ G +S A 
Sbjct: 1   MAVRELRPRDRGPKGRELDETAWSDIRELLG--EGERRRDLLIEYLHLIQDRFGCLSAAH 58

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQVCGTTPCMLRGCEKLIEVC 116
           +  +A  + ++   V E+A+FY  F +   G        +++C +  C L G E LI   
Sbjct: 59  LRALAEEMRLSQAEVYEVASFYDHFDVVREGEEKPAPLTIRICDSISCALAGAEALIGEV 118

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
                  P        +      C G C  AP   IG    + 
Sbjct: 119 SA--GVDP------AAIRVVRAPCMGRCATAPAARIGDREVDH 153


>gi|221090843|ref|XP_002168613.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] flavoprotein
           2, mitochondrial [Hydra magnipapillata]
          Length = 101

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           + V + K+   P     D   +  EVEC GACVNAPMV I  + YEDL P  + EII++ 
Sbjct: 1   MSVIKEKLQINPGETTKDKMFTLSEVECLGACVNAPMVQINDNFYEDLKPSDMVEIIESL 60

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKKDD 215
           +  +G   +PGP+  R +S PAGGLTSL  +  +  G K +  
Sbjct: 61  A--KGIIPKPGPRSGRFASEPAGGLTSLT-SPPRGPGFKLQSG 100


>gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Leptothrix cholodnii SP-6]
          Length = 627

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 6   LAEEEFQPSSFSFSEESA---IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIE 62
           L   E  P     +         +  ++ R+   R   A++ +L   Q  + W+ R  + 
Sbjct: 12  LESNEMAPVKIETTPPDRLQGDGMEALLRRH--GRNPHALVQILREVQAHQTWLPRDTLS 69

Query: 63  VVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
           ++A+ L +    V  +A+FY  F + PVG    +     T  ML G E L+     ++  
Sbjct: 70  LLAHELGLTLAHVEGVASFYRFFHMQPVGEYRLLLSDNITDRML-GSEALLADLCQQLRV 128

Query: 123 KPLHRNSDGTLSWEEVECQGACVNAPMVMIG-KDTYEDLTPERLEEIID 170
           +P    +DG +S     C G C   P +++        L  +R+  I +
Sbjct: 129 EPGRMRADGRVSVARSSCTGLCDQGPALLVNHHHVITRLDAQRVARIAE 177


>gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxidans DMS010]
 gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxydans DMS010]
          Length = 565

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 20/190 (10%)

Query: 1   MSVRRLAEEEFQP----SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWV 56
           +S ++L +E   P           ++   V  ++     SR +  +I  L + Q+   ++
Sbjct: 6   ISAQKLGKELKLPRAVGKGRQVDPKALSEVQALLG--DESRQKDLLIEHLHKIQDFYHYI 63

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKL 112
           S   +  +A+ + ++   V E+ATFY  F +            V+VC +  C + G E+L
Sbjct: 64  SAPHLVALAHEMKLSRAEVYEVATFYHHFDVIKEDQTPPPPLTVRVCDSMTCEMLGAEEL 123

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           I      + Q          +  + V C G C  AP+ ++G +  E     ++ E +D  
Sbjct: 124 IHSLEQGLGQD---------VRVQRVPCIGRCDKAPVAVVGMNPVEHADAAQVIEFVDK- 173

Query: 173 STGQGDTIRP 182
              Q + I P
Sbjct: 174 KQVQPEKIDP 183


>gi|29375955|ref|NP_815109.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
           [Enterococcus faecalis V583]
 gi|227518654|ref|ZP_03948703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX0104]
 gi|227553184|ref|ZP_03983233.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis HH22]
 gi|229545927|ref|ZP_04434652.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX1322]
 gi|229550121|ref|ZP_04438846.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis ATCC 29200]
 gi|255972898|ref|ZP_05423484.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T1]
 gi|255975953|ref|ZP_05426539.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T2]
 gi|256618968|ref|ZP_05475814.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
 gi|256762395|ref|ZP_05502975.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T3]
 gi|256853025|ref|ZP_05558395.1| predicted protein [Enterococcus faecalis T8]
 gi|256958879|ref|ZP_05563050.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256962027|ref|ZP_05566198.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
 gi|256965225|ref|ZP_05569396.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
 gi|257082643|ref|ZP_05577004.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
 gi|257085352|ref|ZP_05579713.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
 gi|257086847|ref|ZP_05581208.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
 gi|257089782|ref|ZP_05584143.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis CH188]
 gi|257415998|ref|ZP_05592992.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis AR01/DG]
 gi|257419200|ref|ZP_05596194.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis T11]
 gi|257422722|ref|ZP_05599712.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis X98]
 gi|293383049|ref|ZP_06628967.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis R712]
 gi|293388210|ref|ZP_06632731.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis S613]
 gi|294779581|ref|ZP_06744975.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis PC1.1]
 gi|307271122|ref|ZP_07552405.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4248]
 gi|307273328|ref|ZP_07554573.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0855]
 gi|307277474|ref|ZP_07558566.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2134]
 gi|307279195|ref|ZP_07560253.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0860]
 gi|307288116|ref|ZP_07568126.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0109]
 gi|307291375|ref|ZP_07571259.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0411]
 gi|312900654|ref|ZP_07759951.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0470]
 gi|312904132|ref|ZP_07763300.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0635]
 gi|312907362|ref|ZP_07766353.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312909978|ref|ZP_07768826.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis DAPTO 516]
 gi|312952392|ref|ZP_07771267.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0102]
 gi|29343417|gb|AAO81179.1| NAD-dependent formate dehydrogenase, gamma subunit, putative
           [Enterococcus faecalis V583]
 gi|227073911|gb|EEI11874.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX0104]
 gi|227177710|gb|EEI58682.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis HH22]
 gi|229304707|gb|EEN70703.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis ATCC 29200]
 gi|229308995|gb|EEN74982.1| possible NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis TX1322]
 gi|255963916|gb|EET96392.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T1]
 gi|255968825|gb|EET99447.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T2]
 gi|256598495|gb|EEU17671.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ATCC 4200]
 gi|256683646|gb|EEU23341.1| NAD-dependent formate dehydrogenase, gamma [Enterococcus faecalis
           T3]
 gi|256711484|gb|EEU26522.1| predicted protein [Enterococcus faecalis T8]
 gi|256949375|gb|EEU66007.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256952523|gb|EEU69155.1| NADH dehydrogenase [Enterococcus faecalis Merz96]
 gi|256955721|gb|EEU72353.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis HIP11704]
 gi|256990673|gb|EEU77975.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis E1Sol]
 gi|256993382|gb|EEU80684.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis Fly1]
 gi|256994877|gb|EEU82179.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis D6]
 gi|256998594|gb|EEU85114.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis CH188]
 gi|257157826|gb|EEU87786.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis ARO1/DG]
 gi|257161028|gb|EEU90988.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis T11]
 gi|257164546|gb|EEU94506.1| NAD-dependent formate dehydrogenase gamma subunit [Enterococcus
           faecalis X98]
 gi|291079714|gb|EFE17078.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis R712]
 gi|291082394|gb|EFE19357.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis S613]
 gi|294453371|gb|EFG21779.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis PC1.1]
 gi|306497606|gb|EFM67139.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0411]
 gi|306500852|gb|EFM70170.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0109]
 gi|306504320|gb|EFM73532.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0860]
 gi|306505739|gb|EFM74917.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2134]
 gi|306509855|gb|EFM78880.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0855]
 gi|306512620|gb|EFM81269.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4248]
 gi|310626390|gb|EFQ09673.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           DAPTO 512]
 gi|310629776|gb|EFQ13059.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0102]
 gi|310632608|gb|EFQ15891.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0635]
 gi|311289936|gb|EFQ68492.1| respiratory-chain NADH dehydrogenase 24 Kd subunit [Enterococcus
           faecalis DAPTO 516]
 gi|311292135|gb|EFQ70691.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0470]
 gi|315027370|gb|EFT39302.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX2137]
 gi|315029990|gb|EFT41922.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4000]
 gi|315033791|gb|EFT45723.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0017]
 gi|315036876|gb|EFT48808.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0027]
 gi|315147885|gb|EFT91901.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX4244]
 gi|315150638|gb|EFT94654.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0012]
 gi|315153355|gb|EFT97371.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0031]
 gi|315155868|gb|EFT99884.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0043]
 gi|315157965|gb|EFU01982.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0312]
 gi|315164268|gb|EFU08285.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1302]
 gi|315166638|gb|EFU10655.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1341]
 gi|315170078|gb|EFU14095.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1342]
 gi|315174469|gb|EFU18486.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1346]
 gi|315575556|gb|EFU87747.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0309B]
 gi|315578477|gb|EFU90668.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0630]
 gi|315580002|gb|EFU92193.1| respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX0309A]
 gi|327535029|gb|AEA93863.1| putative NADH dehydrogenase (ubiquinone) subunit E [Enterococcus
           faecalis OG1RF]
 gi|329571420|gb|EGG53107.1| Respiratory-chain NADH dehydrogenase subunit [Enterococcus faecalis
           TX1467]
          Length = 162

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 42  VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           ++ +L+  Q   +EG++ +   ++VA  L +   RV EI +FY   +  P   +  +++C
Sbjct: 23  ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            +TPC   G   + EV    +         DG   +  + C GAC   P++ I    +  
Sbjct: 82  NSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKDTVFSQ 141

Query: 160 LTPERLEEIIDAFS 173
           LT E++ ++I    
Sbjct: 142 LTEEKIYQLIQHLQ 155


>gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72]
 gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72]
          Length = 602

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V   + R+  +   S+++ +L+  Q++ G+++ +A+  VA  LD+    V  +A FY+
Sbjct: 8   AGVAAAVQRHGAA--PSSLLQVLIAVQDRLGYLAPSALTEVAAALDLPRAHVEGVAGFYS 65

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
               SP G R  +         ++G  +L+     K+  +P   + DG +      C G 
Sbjct: 66  FLHTSPAG-RYRILFADNVIERMQGSAELMHALCGKLWVEPGRVSEDGLVGVAPTSCIGM 124

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIID 170
               P  ++       LT  R+ EI +
Sbjct: 125 GDQGPAALVNGRPITRLTHARINEIAE 151


>gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400]
 gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Burkholderia xenovorans LB400]
          Length = 610

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V+ ++ R        A++ +L  AQ +  W+SR  +  +A  L +    V  +ATFY  F
Sbjct: 21  VDALLLR--ARHDPHALVQILREAQARHTWLSRELLGYIAGALGLTLAHVEGVATFYRFF 78

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             SP G    +     T   ++G   L++    ++  +      DG +S +   C G C 
Sbjct: 79  HTSPAGEYRVLFSDNITD-RMQGNAALLDDLCRRLGVQRGQMREDGRVSVDFCSCTGLCD 137

Query: 146 NAPMVMIGKD-TYEDLTPERLEEIID 170
             P ++I        L   R+ ++ +
Sbjct: 138 QGPSLLINHHQVVTRLDAGRVAQLAE 163


>gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
 gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
          Length = 567

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +   P        +   V E++     SR    +I  L + Q++ G ++ + +  +A  +
Sbjct: 20  KRQAPKGRRVDPAALAEVRELLG--DESRQADLLIEHLHKIQDKFGHLASSHLAALAQEM 77

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
            +A   V E+A+FY  F +   G  A     V+VC    C + G + L+      + ++ 
Sbjct: 78  RLAQTEVYEVASFYHHFDIVKEGDAAPQALTVRVCDGLSCEMAGAKDLLAKLPKILGKE- 136

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
                   +      C G C  AP+ ++G++   + T E ++  ++     +      G 
Sbjct: 137 --------VRVIAAPCVGRCEQAPVAVVGQNPVINATCEAVQTAVEK----KEIVQAEGS 184

Query: 185 QIDRISSAPAGGLTSLLDNNSKKR 208
             D  +    GG   L    S +R
Sbjct: 185 ITDFSAYQNEGGYALLKKCVSGER 208


>gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
 gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
          Length = 620

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 13/185 (7%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  V+  L    ++ GW+S  A+  +   L ++   V  +ATFY  F  +P   R  V 
Sbjct: 52  QRHLVMEALHAVNDRVGWISPGALNYIGKRLSVSAADVYSVATFYGLFSTNPRPKR-VVH 110

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---MVMIGK 154
           VC    CM RG ++L      K+              W+   C G C  AP    V  G 
Sbjct: 111 VCTDIACMARGSKELCASLEKKLGPASAMTG------WKHSPCLGVCERAPAALAVEAGD 164

Query: 155 DTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
             +E L  P  ++E++ A + G        P I  +  A   GL  L      K   +  
Sbjct: 165 PPHEHLIGPATMDEVVLALNDGPEALAAEAPPIMAVPQAGQDGLMLLK--RIGKVDPESI 222

Query: 214 DDKIS 218
           DD ++
Sbjct: 223 DDYLA 227


>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
 gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
          Length = 565

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 19/210 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P     SE++   V  ++      R    +I  L   Q++   +S   +  +A  L ++ 
Sbjct: 22  PKGRQVSEDAIADVKSLLGN--RERRADLLIEYLHLIQDKFKHLSTQHLAALAEELRLSQ 79

Query: 73  IRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F +            ++VC +  C L G + L+     K +       
Sbjct: 80  TEVYEVASFYAHFDIVKEDEEIPPSLTIRVCDSLSCELAGAQDLLFKLGEKYNGG----- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR-PGPQID 187
             G +      C G C  AP + IG +  ++   E++E+ I      +    + P  +  
Sbjct: 135 --GKVRVVRAPCMGRCDTAPTLEIGHNHIDNANEEKVEKAI----ITKDFHPKIPNYENL 188

Query: 188 RISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
           +  SA  GG   L +  +  R   +  D+I
Sbjct: 189 KDYSAN-GGYAELQNLRNGSRTPDQIQDEI 217


>gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15]
          Length = 571

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGT 92
           R +  +I  L   Q+ +G++S A +  +A+ +++    V E ATFY  F +         
Sbjct: 42  RHRDRLIEHLHLIQDADGYLSMARLRALASFMNLPMADVYETATFYAHFDVVHDEQTPPP 101

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L G   L +   +              +      C G C  AP+V +
Sbjct: 102 AITLRVCDSLSCQLAGASALHKTLADG--------TDPAQVRVVHAPCMGRCDTAPVVAV 153

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207
           G     + T E +   ++     Q D I      D  S   AGG   L D    +
Sbjct: 154 GHHHVGNATAETVGAAVEQ-QQVQPDEIHWQKLADYRS---AGGYQLLKDCREGR 204


>gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 563

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 20/211 (9%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP            V  V    PP+R    +I  L   Q+  G +    +  +A+ L++A
Sbjct: 17  QPRGRRPRPADIRAVRAVSGGLPPTR--DLLIEHLHCLQDHYGHLKAEHLVALAHELNLA 74

Query: 72  YIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
              V E+ATFY  F +            V+VC    C L G + L++     +       
Sbjct: 75  PAEVYEVATFYHHFDVVHDNAAPPPPITVRVCDAIGCALSGADDLVQALEAGLG------ 128

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
             DG +  + V C G C  AP+ ++G +     +   ++  I      + +         
Sbjct: 129 --DG-VRVQRVPCVGRCDQAPVAVVGCNPVGQASLATVQARIAQ-RALRPELPA---GTV 181

Query: 188 RISSA-PAGGLTSLLDNNSKKRGKKKKDDKI 217
           R S+   AGG   L D  S +R      D +
Sbjct: 182 RYSAYRAAGGYRVLADCLSGRREPASVIDTL 212


>gi|300245947|gb|ADJ94031.1| putative benzoate-degrading protein BamG [Clostridia bacterium
           enrichment culture clone BF]
          Length = 129

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +       +  I TFY QF+L P+G    +QVC  T C L   EK+ E  + +   K  H
Sbjct: 1   MTGFPTSVLYSIVTFYAQFRLEPIGD-NLIQVCHGTACHLADAEKISEAIQLESGAKSGH 59

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            + DG  + E+V C G C   P++ + ++TY  ++PE   ++I     G
Sbjct: 60  TSPDGKFTVEKVACLGCCSLGPVITVNEETYARMSPEAARKLIKQRKKG 108


>gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 616

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 18/192 (9%)

Query: 35  PSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
             R QS    V+  L    ++ GW+S  A+  +   L +A   V  +ATFY  F  +   
Sbjct: 44  SGRSQSRRHLVMEALHAVNDRVGWISPGALNYIGKRLGIAAADVYSVATFYAMFSTNMRP 103

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS-WEEVECQGACVNAP-- 148
            R  V VC    CM RG +++      ++          G +S W+   C G C  AP  
Sbjct: 104 KR-IVHVCTDIACMARGSKEVCADLEKRLG-------PAGAMSGWKHSPCLGVCERAPAA 155

Query: 149 -MVMIGKDTYEDL-TPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSK 206
             V  G   +E L  P   +E++ A + G        P    +  A   GL  L      
Sbjct: 156 LAVEAGDPPHEHLIGPATADEVVLALNNGPVALAAEAPPGMAVPQAGQEGLMLLK--RVG 213

Query: 207 KRGKKKKDDKIS 218
           K   +  DD ++
Sbjct: 214 KVDPESIDDYLA 225


>gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
 gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
          Length = 585

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 18/165 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRA----HVQ 97
           +I  L R Q++ G +    +  +A  + +A   V E+ATFY  F   P G +A     V+
Sbjct: 57  LIEYLHRLQDEHGALHADHLAALAEAMKLARAEVFEVATFYHHFDFVPAGGKAPPALTVR 116

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C + G  +L     +++  +         +  + V C G C +AP+ ++G+   
Sbjct: 117 VCESLGCAMAGGAELAASLASQLGAE---------VRVQRVPCVGRCDSAPVAVVGQRPV 167

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
                +R+  ++       G+   P P+  R  +  A     L D
Sbjct: 168 LHADADRVAAVVAG-----GERDEPLPEAIRFDAYRAAAGYRLWD 207


>gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
 gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
          Length = 603

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 6/195 (3%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             V +++  +   R +  +  + +  Q++ G++S  A++ +A  L +  + + ++A+FY+
Sbjct: 7   AAVKDIVKEFGADRTR--LTDIALAVQQRFGFISDDAVQAIATGLGVHAVEIEDMASFYS 64

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
               +P G R  +++  T    ++G   +       +       ++DG  + E     G 
Sbjct: 65  FLDRAPRG-RFRIRLSKTPISFMKGATDVARAFEEALGLSLGDTSADGQFTLEWTSDIGM 123

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFST-GQGDTIRPGPQIDRISS-APAGG-LTSL 200
               P  +I       LTPE + +I+ A    G  D     PQ     +  P     +SL
Sbjct: 124 ADQEPSALINSTVLTALTPEDVPQIVAALRRCGPDDGPPRFPQHKPQGAMLPKAAIRSSL 183

Query: 201 LDNNSKKRGKKKKDD 215
           +       G+  + D
Sbjct: 184 VQPGPLLSGRPGRAD 198


>gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
           USDA 110]
 gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110]
          Length = 567

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        +A  + +++   P  R +  +I  L   Q++   +S A +  +A+ + +A+
Sbjct: 25  PKGRQVDPTAAHEIEQLLGDRP--RRRDLLIEYLHLIQDKYHQISAAHLAALADEMKLAF 82

Query: 73  IRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E ATFY  F +   G        ++VC +  C + G  +L++  +           
Sbjct: 83  AEVFETATFYAHFDIVKEGEPDIAPLTIRVCDSLTCEMLGGGQLLQDLQRSAGPG----- 137

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP+  +G       T   +       +  +GD     P    
Sbjct: 138 ----IRVVRAPCVGLCDAAPVAEVGHHFVHQATAAEVLA-----TAARGDVHAHIPAYVD 188

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKI 217
             +    G   LL+    + G   KDD +
Sbjct: 189 YDAYVQDGGYKLLER--LRSGAVSKDDIL 215


>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
          Length = 1206

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           ++   A  ++E++++YP  +    ++P+++   +++G++S  +I  ++  L M   ++  
Sbjct: 631 YNANEAAGLDEILAKYPKEKE--YLMPIIIEEHDKKGYISDPSIVKISEHLGMYPAQIES 688

Query: 78  IATFYTQFQLSPVGTRAHVQVC-GTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLS 134
           I + Y  F          + +C     CM++G  +L++  +              DG+ +
Sbjct: 689 ILSSYHYFPREHTIA-ILMSICVHCHNCMMKGQGRLLKTIQETYDIHETHGGVAKDGSFT 747

Query: 135 WEEVECQGACVN-APMVMIGK------DTYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
              +   G CVN AP +MI +      +T+  L  + +++ + +    + +  +      
Sbjct: 748 LHTLNWLGYCVNDAPAMMIKRKGTNYVETFTGLLGDNIDQRLKSLKNLKKELPKWPKNNI 807

Query: 188 R 188
           R
Sbjct: 808 R 808


>gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
          Length = 561

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 20/207 (9%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P      + +   V  ++   P  R +  +I  L   Q++ G++S A +  +A  L +  
Sbjct: 21  PKGRQLDDAALEEVRALLG--PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQ 78

Query: 73  IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+A+FY  F L            ++VC +  C L        +   +    P    
Sbjct: 79  AEVWEVASFYAHFDLVKEDELPPPALTIRVCESLSCELA--GAEALLAALEEGLDPAE-- 134

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C G C  AP++ +G    +  TPE     ++A     G+T    P  + 
Sbjct: 135 ----VRVLRAPCMGRCDTAPVLELGHRHIDHATPETARAAVEA-----GETHPVIPDYEA 185

Query: 189 ISSA-PAGGLTSLLDNNSKKRGKKKKD 214
             +   AGG ++L         +  ++
Sbjct: 186 FGTYRAAGGYSALERLREGGDWEAVQE 212


>gi|323480623|gb|ADX80062.1| NADH dehydrogenase (ubiquinone) subunit E [Enterococcus faecalis
           62]
          Length = 148

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 42  VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           ++ +L+  Q   +EG++ +   ++VA  L +   RV EI +FY   +  P   +  +++C
Sbjct: 23  ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
            +TPC   G   + EV    +         DG   +  + C GAC   P++ I    +  
Sbjct: 82  NSTPCHYTGGAMVAEVLETILEVPENQPTPDGLFMYHSIPCIGACDLGPVIKIKDTVFSQ 141

Query: 160 LTPERL 165
           LT E++
Sbjct: 142 LTEEKI 147


>gi|255659121|ref|ZP_05404530.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
 gi|260848566|gb|EEX68573.1| NADH dehydrogenase I, E subunit [Mitsuokella multacida DSM 20544]
          Length = 168

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ--EQEGWVSRAAIEVVANILDMA 71
             +    E    ++ V+  +     Q  ++ +L+  Q   +  +V       +A+ L M 
Sbjct: 7   KEYPLPSELQERIDLVLESHDCDPTQ--IVGILLEVQALNERHYVPEPTAYYIADRLKMR 64

Query: 72  YIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLR--GCEKLIEVCRNKIHQKPLHRNS 129
              + +   FY++    P   +  +QVC +  C +      +LI      +  K      
Sbjct: 65  VTNIFDCLKFYSELSPVPR-AKYPIQVCCSPACRVNRVDSHRLISTLERLLDIKLGETTY 123

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDL-TPERLEEIIDAF 172
           DG  + E+V C GAC  AP V I    Y+ L T E++E ++ + 
Sbjct: 124 DGRFTLEKVTCIGACDRAPAVRINGHVYDHLDTQEKIETLLRSL 167


>gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus
           str. Bath]
 gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus
           str. Bath]
          Length = 610

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 3/149 (2%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           E     +N ++  +     Q  ++ +L   Q +   VS  A + VA  L +   +V  + 
Sbjct: 5   EYEHRIINRIVENHGRDTRQ--LLSILREVQHEFRQVSPEAQQKVAESLGVCITQVRAVV 62

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
            FY+     P+G +  +++  +    + G  ++      K+  +P     DG +      
Sbjct: 63  DFYSFLSTVPLG-KFDIRISDSITDHMLGSREVAAGLCRKLGIQPGEPRQDGRVGLSFTS 121

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEI 168
           C G C   P  +I       LT +R ++I
Sbjct: 122 CTGLCDQGPAGLINGYAIPRLTEDRTDQI 150


>gi|213027699|ref|ZP_03342146.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 219

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 8   EEEFQP--SSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
            E  QP   +F  S      +      Y   R  +A I  L   Q+Q GWV   AI  +A
Sbjct: 108 HENQQPQTEAFELSAAEREAIEHEKHHYEDPR--AASIEALKIVQKQRGWVPDGAIYAIA 165

Query: 66  NILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           ++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +      K
Sbjct: 166 DVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAALGKK 218


>gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 572

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 25/214 (11%)

Query: 10  EFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILD 69
            ++P        +   V  ++    P+R    +I  L   Q+ E  +S   +  +A+I+ 
Sbjct: 27  RYKPKGRMLDPVALDEVRALLGNISPTR--DMLIEYLHMIQDSEKHLSARHLAALAHIMR 84

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL 125
           +    V E+A+FY  F L      A     V+VC +  CM+ G E ++E  +        
Sbjct: 85  IPMAEVWEVASFYDHFDLVKEDETAPPLCTVRVCTSLSCMMAGGETMLEKLQPY------ 138

Query: 126 HRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
              +   + +    C GAC  AP   +G    E  +        +A    + D     P 
Sbjct: 139 ---ASDKVRFVPAPCIGACDKAPAAAVGHKLVEHAS-------FEALKAVEEDGHPEIPA 188

Query: 186 ID-RISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
              R     A G  SLL   +   G+K  +D +S
Sbjct: 189 TARRFDDYVADGGYSLL--KALLAGEKTAEDVLS 220


>gi|317970223|ref|ZP_07971613.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
           CB0205]
          Length = 145

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             ++ V+ R+       A++ +L  AQ+  G +S + +  VA +L +   RV   A+FY 
Sbjct: 6   DALDPVLRRH--GYQAEALLEVLAAAQQIYGHLSPSLLRHVAGLLRLPLSRVQGTASFYH 63

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+LSP   R    VC  T C ++G   L +  +  + Q               V C G+
Sbjct: 64  LFRLSPP-PRHQCLVCTGTACHVQGAGLLFKALQTTLKQPWCE--------LGSVRCIGS 114

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
           C   P++++  D +   T       +      +
Sbjct: 115 CSGGPLLVVDGDIWTHQTSATA---LAGLRRLK 144


>gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 585

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
              +   +  ++      R +  +I  L   Q++ G +S   +  +A+ + M    V E 
Sbjct: 30  DPAALAEIEALLGA--AHRERDELIEHLHALQDRFGHLSLRHLRALADWMRMPMAEVYET 87

Query: 79  ATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           ATFY  F +     PV     V+VC + PC L G + L       +            + 
Sbjct: 88  ATFYAHFDVVREDEPVPPALTVRVCDSLPCQLAGAQALRAALDAALDPA--------RIR 139

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
                C G C  AP+  +G+      TP     ++ A + G  D   P           A
Sbjct: 140 VLRAPCMGRCDQAPVAQLGRRHLSRATPA---AVLAALARGALD-PEPIAWQRLADYRAA 195

Query: 195 GGLTSLLDNNSKKRG 209
           GG T L    S + G
Sbjct: 196 GGYTLLQRLRSGETG 210


>gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
 gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
          Length = 582

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 21/193 (10%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
                    +   V  ++   P  R +  +I  L   Q++ G +S   +  +A+ + +A 
Sbjct: 41  NKGRQIDPAALDEVRFLLGDAP--RRRDLLIEHLHAVQDKFGHLSARHLAALAHDMRLAM 98

Query: 73  IRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN 128
             V E+ATFY  F +            V+VC +  C L G EK+++  ++          
Sbjct: 99  AEVWEVATFYAHFDVVKEDAAAPPAVTVRVCDSLSCALAGAEKVLDTLQSGSGSD----- 153

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
               +      C GAC  AP+  +G    E      +   I A                R
Sbjct: 154 ----VRVIRAPCMGACDKAPVAAVGHHLVEHADAASVARHIAA------PDHASALNPVR 203

Query: 189 ISSAPAGGLTSLL 201
           +++  A G  +LL
Sbjct: 204 LAAYRADGGYALL 216


>gi|226323627|ref|ZP_03799145.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
 gi|225207811|gb|EEG90165.1| hypothetical protein COPCOM_01402 [Coprococcus comes ATCC 27758]
          Length = 103

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVE 139
           FY  F   P G +  ++VC  T C +R    ++E    ++      H + D   + E V 
Sbjct: 5   FYENFSFEPKG-KYVIKVCDGTACHVRKSIPILEALYKELGLNEHKHTSDDMLFTVETVS 63

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
           C GAC  AP + +  + +  ++PE++ ++++     + +
Sbjct: 64  CLGACGLAPAITVNDEVHPKMSPEKVIKLLEELRGEENE 102


>gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 569

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 23/203 (11%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP        +   V   +   P  R +  +I  L    ++ G ++   +  +A+ L ++
Sbjct: 21  QPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASELRLS 78

Query: 72  YIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
              V E+ATFY  F +                V+VC    C L G + LI+     +  +
Sbjct: 79  MTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALLGTE 138

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                    +      C G C  AP  ++G++  +  T E ++  + A    +     P 
Sbjct: 139 ---------VRVVAAPCIGRCEKAPAALVGQNPVDTATAEAIDAAVQA----KAVRHAPE 185

Query: 184 PQIDRISSAPAGGLTSLLDNNSK 206
           P I   +    GG   L    S 
Sbjct: 186 PYIGYDAYRKDGGYALLKSLASG 208


>gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
 gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
          Length = 633

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 15/201 (7%)

Query: 3   VRRLAEEEF-QPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +RR A  +  QP       ++   V  +I  R P    +  +I  L    ++ G +    
Sbjct: 22  IRRKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERH 76

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCR 117
           +  +A ++++    V E+A+FY  F++   G    R  ++VC +  C L G  +L+    
Sbjct: 77  LVALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLP 136

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            ++          G +  + V C G C  AP+ ++ +      T ER+   +D       
Sbjct: 137 GRLRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVDLMPERAP 191

Query: 178 DTIRPGPQIDRISSAPAGGLT 198
                 P      + P   +T
Sbjct: 192 ALHPQSPAAMVFDAVPESAIT 212


>gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Alicycliphilus denitrificans BC]
 gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans BC]
          Length = 633

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 15/201 (7%)

Query: 3   VRRLAEEEF-QPSSFSFSEESAIWVNEVIS-RYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +RR A  +  QP       ++   V  +I  R P    +  +I  L    ++ G +    
Sbjct: 22  IRRKAHLKGRQPE-----PQALADVQALIGPRPPEGHARDLLIEHLHLINDRHGALHERH 76

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCR 117
           +  +A ++++    V E+A+FY  F++   G    R  ++VC +  C L G  +L+    
Sbjct: 77  LVALARLMNLPMAEVYEVASFYHHFEILRDGEQPARLVLRVCDSLSCQLAGAGELLARLP 136

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            ++          G +  + V C G C  AP+ ++ +      T ER+   +D       
Sbjct: 137 GRLRALGH-----GDVRVQAVPCVGRCEQAPVAVVHQCPVPHATAERVLAQVDLMPERAP 191

Query: 178 DTIRPGPQIDRISSAPAGGLT 198
                 P      + P   +T
Sbjct: 192 ALHPQSPAAMVFDAVPESAIT 212


>gi|326386801|ref|ZP_08208421.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208720|gb|EGD59517.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 142

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%)

Query: 24  IWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
             + E+I+ +  +  +  ++P+L   Q + G VS  A   +A  L+++   V  + +FY 
Sbjct: 5   ERIAEIIADH--TGREGPLLPILHDVQTEFGHVSPEAEGQIALALNLSRAEVHGVVSFYH 62

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+ +P   R  V++C    C  RG E L+    +              +    V C G 
Sbjct: 63  DFREAPD-PRPCVELCRAEACQARGVEALVAAAEDAAG---------SRVRLATVYCLGL 112

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C   P   +G+  +  L  ++L ++I+A  
Sbjct: 113 CSVGPSARVGERLHARLDADKLVKVIEAAR 142


>gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 569

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMA 71
           QP        +   V   +   P  R +  +I  L    ++ G ++   +  +A+ L ++
Sbjct: 21  QPKGRQVDAAALAEVRVALGDMP--RRRDLLIEHLHCINDRYGQLAMPHLVALASELRLS 78

Query: 72  YIRVLEIATFYTQFQLSP--------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
              V E+ATFY  F +                V+VC    C L G + LI+     +  +
Sbjct: 79  MTEVYEVATFYHHFDVVREDADGQIAPPPALTVRVCEGIACELAGAQALIDKLPALLGTE 138

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
                    +      C G C  AP  ++G++  ++ T E +   ++A    +     P 
Sbjct: 139 ---------VRVIAAPCIGRCEKAPAALVGQNPVDNATAETIGTAVEA----KAVRHAPE 185

Query: 184 PQIDRISSAPAGGLTSLL 201
           P ID  +    GG   L 
Sbjct: 186 PHIDYDAYRRDGGYALLK 203


>gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
 gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
          Length = 609

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 31  SRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           S Y  +     ++ +L + Q +  ++  AAIE ++ +L++   +++ +  FY+ F L+P 
Sbjct: 12  SHYQATH----LLQILRQIQSRYHYIPEAAIEQLSGLLNIPRTQIIGVVEFYSFFHLAPR 67

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + +  +    + G + L +    K+         DG +S +   C G C   P  
Sbjct: 68  GQ-YELLISDSITDHMLGKKDLFDYLAKKLDVAVGEVREDGVVSLDNTSCTGMCDQGPAG 126

Query: 151 MIGKDTYEDLTPERLEEIID 170
           ++       L    +++I +
Sbjct: 127 LVNGLALTRLDQSGIDKIAE 146


>gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
          Length = 564

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 15/160 (9%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           R L +    P       ++   +  ++   P  R    +I  L + Q+    +S A I  
Sbjct: 13  RALRKARPTPKGRQVDFKALEEIRALLGDSP--RRADLLIEFLHQIQDTYHHISAAHIAA 70

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           +A  L ++   V E+ATFY  F +   G        V+VC +  C + G + LI   +  
Sbjct: 71  LARELKLSQTEVYEVATFYHHFDVIKEGESPPPPLTVRVCDSVTCEIGGAKTLIAELKAV 130

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
           + +          +  ++V C G C  AP+ ++G +    
Sbjct: 131 LGEG---------VRVQKVPCVGRCEQAPVAVVGVNPIGH 161


>gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 627

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLI 113
           GW+  A +  +A  L +   RV   A+FY+     P G    +     T  ML G + L+
Sbjct: 31  GWLPPATLSALAGALGIPRARVESTASFYSFLHTRPAGEYRILFSDNITDRML-GNQALM 89

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI 168
           +   +K+  +P   + DG        C G C   P ++    T   LT ER++E+
Sbjct: 90  QTLCDKLWLQPGKVSEDGLARVSTTSCTGMCDQGPALLANGRTITRLTLERIDEM 144


>gi|318041124|ref|ZP_07973080.1| bidirectional hydrogenase complex protein HoxE [Synechococcus sp.
           CB0101]
          Length = 152

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 20  EESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            E    +N V+ R+        +I +L  AQ+  G +S   +  +A  L + + RV   A
Sbjct: 8   AELYEGLNSVLQRH--GHQAHGLIEVLNHAQQLYGHLSEPLLRHIARQLQLPFSRVQGTA 65

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR----NKIHQKPLHRNSDGTLSW 135
           +FY  F+      R    VC  T C + G  +L+   R     ++  +            
Sbjct: 66  SFYHLFRFK-APARHSCLVCTGTACHVLGAAQLLADLRNAAMEELGVELG---------- 114

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
             V C G C  AP+V++  + +  L+      ++      +
Sbjct: 115 -SVRCIGTCSGAPLVVVDGEVWNHLSSA---AVLKRLRELE 151


>gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 588

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R    ++  L   Q+Q   + + +I  +A  L +   ++  +  FY+ F  SP G R  +
Sbjct: 16  RQNDHLLHRLYDLQQQFHHIPQQSIINLATELKLPISQIEGVVDFYSFFHRSPRG-RYDI 74

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
                T C   G   +++    K++  P +  +DG++S +   C G C   P +++   T
Sbjct: 75  LFSNCTSC---GDLAMMQQLCEKLNVSPGNTRADGSVSIDATSCIGMCDQGPALLVNGRT 131

Query: 157 YEDLTPERLEEI 168
              L+ +RLE I
Sbjct: 132 ITQLSAQRLEMI 143


>gi|218260382|ref|ZP_03475731.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224553|gb|EEC97203.1| hypothetical protein PRABACTJOHN_01394 [Parabacteroides johnsonii
           DSM 18315]
          Length = 92

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           ++P G +  + VC  T C +RG EK+++  + ++  K      DG  S + + C GAC  
Sbjct: 2   MTPKG-KYPISVCLGTACYVRGAEKVLDEFQRQLEIKVGETTPDGLFSLDCLRCVGACGL 60

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAF 172
           AP+V I    Y  LTPE++ +I+  +
Sbjct: 61  APVVTIAGKVYGRLTPEKVRDILSEY 86


>gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 571

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 16/175 (9%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQL----SPVGT 92
           R +  +I  L   Q+  G++S   +  +A+ +++    + E ATFY  F +         
Sbjct: 42  RHRDRLIEHLHVVQDACGYLSMPHLRALASFMNLPMAAIYETATFYAHFDVIHDEQAPPP 101

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              ++VC +  C L G E L +   +     P       T+      C G C  AP+V +
Sbjct: 102 AITLRVCDSLSCQLAGAEALHQALSD--GADP------ATVRVRRAPCMGRCDTAPVVEV 153

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207
           G         + +   ++       + I+        S+   GG   L D +  +
Sbjct: 154 GHHHVCHANAQNVGAAVEQ-GQIHPEEIKWQRLAGYCST---GGYGLLTDCHEGR 204


>gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
 gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
          Length = 573

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 32/223 (14%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           +R   +  Q ++   SE     V  ++   P +  +  +I  L + Q+  G + +  +  
Sbjct: 18  QRGKPKGRQAAALDMSE-----VLAILG--PGAHRRDLLIEYLHQLQDHLGCLPKTHLSA 70

Query: 64  VANILDMAYIRVLEIATFYTQFQL----SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           +A  L ++   V E+ATFY  F +    + V     V+VC    C + G E+LIE     
Sbjct: 71  LAECLKLSQTEVFEVATFYHHFDVVESKNAVNHTLTVRVCNGPSCCMAGAEELIEKLPTL 130

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
           +           T+  + V C G C  AP V +G+         ++           G  
Sbjct: 131 LG---------STVRVQAVPCIGRCEQAPAVAVGQHEMGWANHHQI------MEAAFGQH 175

Query: 180 IRPGPQIDRISSAPA----GGLTSLLDNNSKKRGKKKKDDKIS 218
            +  P     +S P     GG   L    S +R  +   D +S
Sbjct: 176 TKALPPH--CASEPQYKATGGYQLLQACVSGQRTVESVIDTLS 216


>gi|317125323|ref|YP_004099435.1| formate dehydrogenase, subunit gamma [Intrasporangium calvum DSM
           43043]
 gi|315589411|gb|ADU48708.1| formate dehydrogenase, gamma subunit [Intrasporangium calvum DSM
           43043]
          Length = 157

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 26  VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQF 85
           V  +  ++   R   A++ +L  A  + G + R  +E +A++L+++   V  + +FY  F
Sbjct: 19  VRRLAEQHATDR--GALMVVLHAAVAELGHLERTDVETIADVLNLSVADVHGVVSFYKDF 76

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P      V +C    C   G E +    R ++  +         +  +EV C G C 
Sbjct: 77  RTDPAPA-HTVHLCRGEACQAVGAESVFAQARAQLAHRDD-------VEVDEVFCLGNCA 128

Query: 146 NAPMVMIGKDTYEDLTPERLEEIIDAF 172
             P  M+    +  L+ ERL  + + +
Sbjct: 129 LGPSAMVDGRLHGRLSGERLLGLTEEW 155


>gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 656

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           +     +  ++P L    ++ GW+SR A++ +   L +       +A+FY  F L     
Sbjct: 46  HSARDRRDLLLPALHAVNDRVGWISRPALDHICRRLTVPPAEAYAVASFYAMFALRRRPR 105

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           R  V +C    C   G +++      ++     H   DG  +W E  C G C  AP  +
Sbjct: 106 R-VVHLCTDIACAAAGSDRMRARLTERLGPPGGH---DGEAAWHESPCLGMCERAPAAL 160


>gi|218508847|ref|ZP_03506725.1| NADH dehydrogenase subunit E [Rhizobium etli Brasil 5]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/90 (68%), Positives = 68/90 (75%)

Query: 129 SDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           ++GTLSWEEV C GACVNAPMVMIGKDTYEDLTP RLEEIID F+ G G +I+PG QIDR
Sbjct: 1   AEGTLSWEEVVCLGACVNAPMVMIGKDTYEDLTPARLEEIIDTFAAGNGASIKPGTQIDR 60

Query: 189 ISSAPAGGLTSLLDNNSKKRGKKKKDDKIS 218
           I SAP GG TSL     K R + KK D  S
Sbjct: 61  IFSAPEGGPTSLTTEEPKARTRAKKADAES 90


>gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
          Length = 626

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 33  YPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
           +     +  ++P L    +  G++S  A+  VA  L +    V  +ATFY  F + P   
Sbjct: 41  HEARGRRHLLLPALHAVSDAVGYLSEGALNHVATRLSVPPADVYGVATFYAMFTVEPR-A 99

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           R  V VC    C   G E L       +  + +   +     W    C G C  AP VM
Sbjct: 100 RRVVHVCDDVACGPVGGEDLAARLTADLGPEGVGEEA----CWVRSPCLGLCERAPAVM 154


>gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 600

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            + S   V  +I   P    +  +I  L +  +    +    +  +A  +++    V E+
Sbjct: 37  DDASVAEVRALIGAAP--HRRDLLIEHLHKLNDAYRCLHDRHLVALAKEMNIPMAEVYEV 94

Query: 79  ATFYTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           ATFY  F++           V+VC    C + G + L+    + +       N D  +  
Sbjct: 95  ATFYHHFEVVRGDETVPQLTVRVCDGLSCEMAGAKDLLARLPSLLG------NED--VRV 146

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
               C G C  AP  ++ +      T E + +++     G     +
Sbjct: 147 IPAPCIGRCEQAPAAVVHQHPVPRATVESIAQLVKDAKGGHPSATQ 192


>gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
 gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
          Length = 612

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 12/158 (7%)

Query: 19  SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E + + V  +I   P     +  +I  L +  +    +    +  +A  +++    V E
Sbjct: 48  DEAALVEVRTLIGARPAEGHRRDLLIEHLHKLNDAFRCLHDRHLVALAREMNIPMAEVYE 107

Query: 78  IATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +ATFY  F++   G  A     V+VC    C L G   L+      +  +       G +
Sbjct: 108 VATFYHHFEVV-RGDEAAPGLTVRVCDGLACELAGARDLLARLPELLGVEG------GDV 160

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
                 C G C  AP V + +      T  ++ + + +
Sbjct: 161 RVIAAPCIGRCEQAPAVAVDRQAVPLATTAKVLQALKS 198


>gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 607

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      + 
Sbjct: 51  RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVKPRPA-TVLH 109

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           VC    C   G  +L      ++            +S E   C G C  AP  +
Sbjct: 110 VCTDLACAASGAPELCAGIEARLGPGSG-------VSVERSPCLGLCERAPAAL 156


>gi|19115849|ref|NP_594937.1| conserved eukaryotic protein [Schizosaccharomyces pombe 972h-]
 gi|3183091|sp|O13691|NDUV2_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 24 kDa subunit homolog
           C11E3.12, mitochondrial; Flags: Precursor
 gi|2330670|emb|CAB11191.1| conserved eukaryotic protein [Schizosaccharomyces pombe]
          Length = 162

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 11  FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILD 69
            +P  F F  E+      +++RYP     +A++PLL  AQ Q G W+   A+  +A++  
Sbjct: 1   MKPIRF-FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAG 59

Query: 70  MAYIRVLEIATFY-TQFQLSPVGTRAHVQVCGTTPCMLR----GCEKLIEVCRNKIHQKP 124
           ++   V  +   Y   F   P   R  V++C +  C       G       CR+      
Sbjct: 60  VSIDYVHSLILAYPNDFFWRPKKPR--VRICNSWMCQQAAEEQGNSNWDSQCRSV----- 112

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQ 176
                 G    E   C G C   P + I    Y   T E+L +I++A +  +
Sbjct: 113 --ATKYG-FDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALTQKK 161


>gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas
           sp. 3As]
          Length = 597

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RR   +  QP S     ++   V ++I   P    +  +I  L    +Q   +    +  
Sbjct: 27  RRGKLKGRQPES-----QALAEVQQLIGAGP--HRRDLLIEHLHLINDQWHGLHERHLVA 79

Query: 64  VANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +A ++++    V E+ATFY  F   +         V+VC +  C L G   L++     +
Sbjct: 80  LARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGANDLLQRLPQLL 139

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
             +         +      C G C  AP+ ++G+      TP+ + E
Sbjct: 140 GAE---------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDTVRE 177


>gi|325663454|ref|ZP_08151864.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470353|gb|EGC73584.1| hypothetical protein HMPREF0490_02605 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 153

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%)

Query: 23  AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
              + E+I  Y        Q  ++ +L   Q+ +G +  A  + VA +  M    +  + 
Sbjct: 2   EEQIREIIEYYTKEGETISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
             Y    L     R  +Q+C    C  +G   L+++   K   +    +  G        
Sbjct: 62  KRYP--SLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C   C   P +MI    Y  +T E L EI+ A+ 
Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153


>gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
 gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
          Length = 540

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             + +   V +++   P  R +  +I  L + Q+  G +    +  +A+ + ++ + V E
Sbjct: 1   MDDAALDEVRKLLGDEP--RRRDLLIEHLHKIQDAFGCLEARHLRALADEMRLSQVEVYE 58

Query: 78  IATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +A+FY  F +   G        V+VC +  C L+           +    P        +
Sbjct: 59  VASFYHHFDIVREGDVRPAPLTVRVCDSVACALK--GADALAAALEAGVDP------AKV 110

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
             ++V C G C  AP V +GK   ++ +   +   +      +G++    P   ++ S  
Sbjct: 111 RIQKVPCIGRCAGAPAVQVGKRAIDNASEVSVRAAL-----FEGNSDPAVPDYIKLDSYR 165

Query: 194 AGGLTSLLD 202
           A G  +LL+
Sbjct: 166 AAGGYALLE 174


>gi|331086985|ref|ZP_08336060.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409435|gb|EGG88878.1| hypothetical protein HMPREF0987_02363 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 153

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 5/154 (3%)

Query: 23  AIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
              + E+I  Y        Q  ++ +L   Q+ +G +  A  + VA +  M    +  + 
Sbjct: 2   EEQIREIIEYYTKEGEMISQEDLVNMLREIQDVKGCIPAAVQKQVAEVTKMKETFLAAVI 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
             Y    L     R  +Q+C    C  +G   L+++   K   +    +  G        
Sbjct: 62  KRYP--SLKAENYRHEIQICVGAGCSAKGSYDLLKILEKKWKIRQGEVSEGGRFYLRTSG 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           C   C   P +MI    Y  +T E L EI+ A+ 
Sbjct: 120 CMKQCAKGPNMMIDGTVYHQVTEESLGEILKAYR 153


>gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
           A3(2)]
          Length = 646

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ V   L +       +ATFY  F + P      + 
Sbjct: 34  RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 92

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           VC    C   G  +L     +++  +         +  E   C G C  AP  ++
Sbjct: 93  VCTDLACTAAGASRLCAAVESRLGPESG-------VKLERSPCLGLCERAPATLV 140


>gi|237667145|ref|ZP_04527129.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237655493|gb|EEP53049.1| putative iron hydrogenase, gamma subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 94

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++ ++ +Y     +  +I ++   Q++  ++    +  +A  L ++  ++  +ATFY
Sbjct: 1   MEKIDSILEKY--DYNRQLLIAIMQDVQKEYHYLPEEILSYIAEKLKISEAKIYGVATFY 58

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIE 114
             F L P G +  +++C  T C +R    ++E
Sbjct: 59  ENFSLKPKG-KYVIKICNGTACHVRKSIPILE 89


>gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 573

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 13  PSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAY 72
           P        +   V  ++     SR    +I  L    ++ G +    +  +A  + ++ 
Sbjct: 21  PKGRRVQPHALAEVQALLGI--ASRQPDLLIEHLHAINDRYGQLGTPHLAALAQEMRLSQ 78

Query: 73  IRVLEIATFYTQFQLSPV---GTRA-----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
             V E+ATFY  F++      G  A      V+VC    C + G   L++     +    
Sbjct: 79  AAVYEVATFYHHFEVVREDSDGEVAAAPSMTVRVCDGLSCEMAGARDLLDRLPALLG--- 135

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
                  T+      C G C  AP+V+ G+          +++++ A   G      P P
Sbjct: 136 ------ATIRVIPAPCVGRCEQAPVVVAGQLPLVH---ADVDQVVAAVQAG-TVVHVPAP 185

Query: 185 QIDRISSAPAGGLTSLLDNNSKKRG 209
            ID  +    GG   L +  S  R 
Sbjct: 186 YIDLAAYRTYGGYGLLAECVSGTRA 210


>gi|255019942|ref|ZP_05292016.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970601|gb|EET28089.1| NADH-ubiquinone oxidoreductase chain E [Acidithiobacillus caldus
           ATCC 51756]
          Length = 129

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           +   QE  G++   A+   A+   +  ++V E+ +FY      P G R  +++C +  C 
Sbjct: 1   MRLLQEALGYIDDEALHYAADCTGLTPVQVEELCSFYPLVLRRPAG-RHLLRICDSVACH 59

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           L G  +L+         +       G  S     C G C  AP V++        +P  L
Sbjct: 60  LAGAPELVRRAEAISGVRLGQVAGAGHYSILPHVCLGLCDRAPAVLVDGRAVGGFSPTAL 119

Query: 166 EEIIDAFSTG 175
           E+++  +  G
Sbjct: 120 EQLLAEWEQG 129


>gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72]
 gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp.
           BH72]
          Length = 571

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTR----AHVQ 97
           +I  L R Q+  G +    +  +A  + +A   V E+ATFY  F + P G        V+
Sbjct: 41  LIEYLHRLQDAHGALYADHLAALAEAMKLAQAEVYEVATFYHHFDVVPAGETPPPLLTVR 100

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C L G  +L    + ++  +         +  + V C G C  AP+ ++G++  
Sbjct: 101 VCDSLTCALYGGPELAAELQGRLGAE---------VRVQRVPCVGRCDCAPVAVVGQNPV 151

Query: 158 ED 159
             
Sbjct: 152 MH 153


>gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 306

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 28/152 (18%)

Query: 19  SEESAIWVNEVISRYPPSRCQSA-------------------VIPLLMRAQEQEGWVSRA 59
           ++E    V+ ++   P S  + A                   ++P L    ++ GW+S  
Sbjct: 11  TDEERAAVDALLGP-PESSWEGADRCDTDLRWARGGREARDLLLPGLHAVNDRVGWISEG 69

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
           A+  +   L +       +ATFY  F L P      + VC    C   G   L      +
Sbjct: 70  ALNYLCRRLTVPPAEAYGVATFYAMFSLRPRPA-TVLHVCTDLACAAAGAGDLCAGVEAR 128

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +            ++ E   C G C  AP  +
Sbjct: 129 LGPGSG-------VAVERSPCLGLCERAPAAL 153


>gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
 gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
          Length = 626

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           RR   +  QP       ++   V ++I   P    +  +I  L R  +Q   +    +  
Sbjct: 27  RRGKLKGRQPE-----PQALAEVQQLIGAGP--HRRDLLIEHLHRINDQWHGLHERHLVA 79

Query: 64  VANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +A ++++    V E+ATFY  F   +         V+VC +  C L G   L++     +
Sbjct: 80  LARLMNLPMAEVYEVATFYHHFEVLRDDAQPAAITVRVCDSLSCSLAGASDLLQRLPQLL 139

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
             +         +      C G C  AP+ ++G+      TP+ + E
Sbjct: 140 GAE---------VRVMPTPCVGRCEQAPVAVVGQWPVAHATPDAVRE 177


>gi|213401477|ref|XP_002171511.1| predicted protein [Schizosaccharomyces japonicus yFS275]
 gi|211999558|gb|EEB05218.1| predicted protein [Schizosaccharomyces japonicus yFS275]
          Length = 163

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVL 76
           F   S     +++ RYP    Q A +PLL  AQ Q+G +V +AA+  +A++      RV 
Sbjct: 4   FDRRSLEIARQLLRRYPKEWAQGATLPLLDLAQRQQGNFVPQAALREIADMTKSTIARVR 63

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
             A+ Y   +LS  G+    +VC +  C  +G + L +  + +          D  ++ E
Sbjct: 64  ATASQYEYIRLSDSGS--PFRVCTSWMCEEKGAQALRKHAQREAK------RLDVHINIE 115

Query: 137 EVECQGACVNAPMVMIGKDTYEDLT 161
              C G C +AP++      YE+++
Sbjct: 116 SASCLGGCHHAPVLWFQDRLYENMS 140


>gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 581

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           +  ++P L    ++ GW+S+ A+ ++   L +       +A+FY+ F L     R  V V
Sbjct: 26  RDQLLPALHAVNDRVGWISQGALNLICETLHVPPADAYGVASFYSLFALDERPER-VVHV 84

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C    C + G E + +V    +        + G ++W    C G C  AP  +
Sbjct: 85  CTDLACRITGAETVCDVLTEHVGAAGK---ARGGVTWLRSPCLGVCERAPAAL 134


>gi|224696914|emb|CAX51536.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 455]
 gi|224696917|emb|CAX51538.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 402]
 gi|224696926|emb|CAX51544.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 403]
 gi|224696929|emb|CAX51546.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 404]
 gi|307697997|gb|ADN86369.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
          Length = 91

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++ +PVG    + +C   PC L G E+  E  + K+         DG  + +E EC GA
Sbjct: 1   MYETAPVGQ-HKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59

Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           C +AP+V++        ++ E+++++++  S 
Sbjct: 60  CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91


>gi|114571226|ref|YP_757906.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Maricaulis maris
           MCS10]
 gi|114341688|gb|ABI66968.1| NADH dehydrogenase subunit E [Maricaulis maris MCS10]
          Length = 163

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 4/143 (2%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
              A+I +L   Q   G +S AAI  +A+ L+++   VL + +FY  F+  P G R   +
Sbjct: 23  HPDALIEVLHWLQASAGHISDAAIATIADALNLSRAEVLGVVSFYHDFRRQP-GARHTFK 81

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMIGKDT 156
           +C    C   G E +     +++  + L           + V C G C   P  M+ +  
Sbjct: 82  LCRAEACQAAGAEAVAAAIEDQL--EALSTTDHPPEFELKSVYCLGNCALGPAAMLDERP 139

Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179
              LT ER    +    +  G  
Sbjct: 140 LGRLTAERALAALTRLDSRTGGK 162


>gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2]
 gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas naphthalenivorans CJ2]
          Length = 600

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 22  SAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           S   V  +I   P     +  +I  L R  +    +    +  +A  +++    V E+AT
Sbjct: 40  SLEEVRALIGVRPADGHRRDLLIEHLHRLNDAYRCLHDRHLVALAREMNIPMAEVYEVAT 99

Query: 81  FYTQFQLSPVGTR-------AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           FY  F++               V+VC    C + G + L+      +  +         +
Sbjct: 100 FYHHFEVVKGDANGDGQAPGLTVRVCDGLSCEMAGAQDLLARLPALLGAQD--------V 151

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
                 C G C  AP+ ++ +      T E + +
Sbjct: 152 RVIAAPCLGRCEQAPVAVVHQTPVPFATLESVVQ 185


>gi|256783975|ref|ZP_05522406.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 261

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ V   L +       +ATFY  F + P      + 
Sbjct: 51  RRDQLLPALHALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 109

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           VC    C   G  +L     +++  +         +  E   C G C  AP  ++
Sbjct: 110 VCTDLACTAAGASRLCAAVESRLGPESG-------VKVERSPCLGLCERAPATLV 157


>gi|224696908|emb|CAX51532.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica
           HKI 454]
 gi|224696911|emb|CAX51534.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 512]
 gi|224696923|emb|CAX51542.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia sp. HKI 513]
 gi|307697982|gb|ADN86359.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697985|gb|ADN86361.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697988|gb|ADN86363.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697994|gb|ADN86367.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++ +PVG    + +C   PC L G ++  E  + K+         DG  + +E EC GA
Sbjct: 1   MYETAPVGQ-HKITLCTNLPCQLSGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59

Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           C +AP+V++        ++ E+++++++  S 
Sbjct: 60  CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91


>gi|307697991|gb|ADN86365.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++  PVG    + +C   PC L G ++  E  + K+         DG  + +E EC GA
Sbjct: 1   MYETVPVGQ-HKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59

Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFS 173
           C +AP+V++        ++ E+++++++  S
Sbjct: 60  CGDAPVVLLNNHRMCSFMSREKIDQLLEELS 90


>gi|307697976|gb|ADN86355.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
 gi|307697979|gb|ADN86357.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia rhizoxinica]
          Length = 91

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++ +PVG    + +C   PC L G ++  E  + K+         DG  + +E EC GA
Sbjct: 1   MYETAPVGQ-HKITLCTNLPCQLGGAQQTAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59

Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           C +AP+V++        ++ E+++++++  S 
Sbjct: 60  CGDAPVVLLNNHRMCSFMSREKIDQLLEELSK 91


>gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 641

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 39/182 (21%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      + 
Sbjct: 51  RRDLLLPGLHAVNDRVGWISEGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 109

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC    C   G  +L     +++            +  E   C G C  AP  +      
Sbjct: 110 VCTDLACTAAGAAELCADVESRL-------TPGSGVQVERSACLGLCERAPAAL------ 156

Query: 158 EDLTPERLEEIIDAFSTGQ------GDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKK 211
                        A   G+       D  RPGP+    +  P  G      N   +RG+ 
Sbjct: 157 -------------AIRAGETARPAFEDEARPGPEGGPGAQPPGEG------NGKGRRGRT 197

Query: 212 KK 213
            +
Sbjct: 198 TQ 199


>gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Acidovorax ebreus TPSY]
 gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax ebreus TPSY]
          Length = 661

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 15/201 (7%)

Query: 3   VRRLAEEEF-QPSSFSFSEESAIWVNEVI-SRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           +RR A  +  QP + +        V  +I +R P    +  +I  L    ++ G +    
Sbjct: 22  LRRKAHLKGRQPEASAL-----AEVQTLIGARPPEGYARDRLIEHLHLINDRHGALYERH 76

Query: 61  IEVVANILDMAYIRVLEIATFYTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR 117
           +  +A ++++    V E+A+FY  F   + +    R  ++VC    C + G + L+    
Sbjct: 77  LVALARLMNLPMAEVYEVASFYHHFEVLRDADGPPRLVLRVCNGLSCCMAGADALLAELP 136

Query: 118 NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
            ++          G +  +   C G C  AP+ ++ +      T   + E +D       
Sbjct: 137 GRLSAAGH-----GDVRVQAAPCVGRCEQAPVAVVHQCPVPRATLGAVLERVDLMPDRAQ 191

Query: 178 DTIRPGPQIDRISSAPAGGLT 198
                 P      + P   +T
Sbjct: 192 AQHPQAPTAPVFEALPQTAIT 212


>gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 607

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 31/155 (20%)

Query: 19  SEESAIWVNEVISRYPPSRCQSA----------------------VIPLLMRAQEQEGWV 56
           S+E    V+ ++   P S  + A                      ++P L    ++ GW+
Sbjct: 11  SDEERAAVDALLGP-PESSWEGADRSDADLRWARGGRAARDRRDLLLPGLHAVNDRIGWI 69

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
           S  A++ +   L +       +ATFY+ F + P      + VC    C   G  +L    
Sbjct: 70  SEGALDYLCRRLTVPPAEAYGVATFYSMFAVKPRPA-TVLHVCTDLACASAGAAELCAGV 128

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
             ++            +  E   C G C  AP  +
Sbjct: 129 EARLGPGSG-------VGVERGPCLGLCERAPAAL 156


>gi|224696920|emb|CAX51540.1| NADH-ubiquinone oxidoreductase chain E [Burkholderia endofungorum]
          Length = 91

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            ++ +P+G    + +C   PC L G E+  E  + K+         DG  + +E EC GA
Sbjct: 1   MYETAPIGQ-HKITLCTNLPCQLGGAEETAEYLKQKLGIDFGETTPDGKFTLKEGECFGA 59

Query: 144 CVNAPMVMI-GKDTYEDLTPERLEEIIDAFST 174
           C +AP+ ++        ++ E+++++++  S 
Sbjct: 60  CGDAPVALLNNHRMCSFMSREKIDQLLEELSK 91


>gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Variovorax paradoxus EPS]
 gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus EPS]
          Length = 595

 Score =  110 bits (277), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           +   V  ++   P    +  +I  L R  ++   +    +  +A  +++    V E+ATF
Sbjct: 38  ALEEVQALLG--PGPHRRDLLIEHLHRLNDEWQCLHDRHLVALAREMNLPMAEVFEVATF 95

Query: 82  YTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           Y  F   +         V+VC    C L G   L++     +            +     
Sbjct: 96  YHHFEVLRGDDQPAALTVRVCDGLSCELAGARDLLQRLPAMLGAD---------VRVIAA 146

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLT 198
            C G C  AP+ +IG+      T   ++  +D  +   G      P  D +  A A G  
Sbjct: 147 PCVGRCEQAPVAVIGQAPVVRATAANVKAAVDQDARAHGL-----PADDGVFDAAAAGPV 201

Query: 199 SLLDNN 204
           S+  + 
Sbjct: 202 SITSSP 207


>gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s]
           Ferredoxin Involved In The Nadp-Reducing Hydrogenase
           Complex
          Length = 85

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + P G +  + VC  T C ++G +K++   + ++         DG  S + + C G C  
Sbjct: 1   MVPKG-KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCAL 59

Query: 147 APMVMIGKDTYEDLTPERLEEIIDA 171
           AP+VM+G+  Y ++TP ++++I+  
Sbjct: 60  APIVMVGEKVYGNVTPGQVKKILAE 84


>gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 580

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 17/137 (12%)

Query: 37  RCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           R +  +I  L   Q++ G ++   +  +A  L +A   V E+ATFY  F +       H+
Sbjct: 44  RRRDLLIEHLHCIQDRYGQLAMPHLVALAQELGLAMTEVYEVATFYHHFDVVREDADGHI 103

Query: 97  --------QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
                   +VC    C + G + LI+     +            +      C G C  AP
Sbjct: 104 APPPALTVRVCEGIACEMAGAQVLIDKLPAVLGTD---------VRVVAAPCIGRCEKAP 154

Query: 149 MVMIGKDTYEDLTPERL 165
            V+ G+   +  T E +
Sbjct: 155 AVLAGQKPVDGATVEAV 171


>gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
 gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
          Length = 588

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 3/152 (1%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++  A  +   +  Y      + ++ +L   Q     + + AI+ +A  L ++  ++  
Sbjct: 1   MNKALATLIQAQVKVYRGD--PTYILQILRHIQFSCSHIPQQAIQQLATTLSISIPKIRA 58

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +  FY      P G    + +  +    + G  ++      K++ K     +DG ++   
Sbjct: 59  LIEFYHFLHYHPRGD-YDIYISDSIIDHMSGKNEISNYLCEKLNVKLNQPRADGRVTVSN 117

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
             C G     P  +I       LT +++++I+
Sbjct: 118 TSCTGMSDQGPAALINGLALTRLTRKKVDQIV 149


>gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
 gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 595

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 42  VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQ 97
           +I  L   Q+ +G +S   +  +A  +++    V E ATFY  F +            V+
Sbjct: 71  LIEHLHTIQDAQGHLSLVMLRALATYMNLPMAAVYETATFYAHFDVVHDDQSPPPEVTVR 130

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC +  C L G E L           P        +      C G C  AP+V +G    
Sbjct: 131 VCDSLSCRLAGAEALKAK--LAAGVDPE------AVRVVRAPCMGRCDTAPVVEVGHHHV 182

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA-GGLTSLLDNNSKK 207
              T E +  +ID      G          R++   A GG   L D ++ +
Sbjct: 183 RFATHEGVASVIDT-----GHYHPEAILWQRLADYRAEGGYALLADCHAGR 228


>gi|297190827|ref|ZP_06908225.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150630|gb|EFH30697.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 176

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ +   L +       +ATFY+ F + P   +  + 
Sbjct: 53  RRDLLLPALHAVNDRVGWLSEGALDYICRRLTVPPAEAYGVATFYSMFSVRPRPAK-VLH 111

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           VC    C  RG   L                 D  +S +   C G C  AP  +
Sbjct: 112 VCTDLACAARGG-SLSAA---------DAVGPD--VSVQPSPCLGLCERAPAAL 153


>gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina]
          Length = 610

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 10/184 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            R    ++  L+R Q++  +V  AA+E ++  LD+   +V     FY      P G    
Sbjct: 21  GRDPRHLLQHLIRVQQRFSYVPDAAVEALSVALDVTRTQVRAAIAFYAFLHDRPRGA-FE 79

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH------RNSDGTLSWEEVECQGACVNAPM 149
           ++        + G  +LI +   ++    L          DG  S     C G C   P 
Sbjct: 80  IRFSDNITDRMLGSRRLIRLLIERLGLTGLPAWGRDLVRPDGRASVGLASCTGMCDQGPA 139

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRG 209
           +++      +L  +R++ I D    G      PG   +            LL  N    G
Sbjct: 140 LLVNGQAVTNLDAQRVDRIADLVQEGIPLERWPG---EFFRVENNIRRRGLLLGNPATDG 196

Query: 210 KKKK 213
              +
Sbjct: 197 AAVR 200


>gi|163784146|ref|ZP_02179087.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880590|gb|EDP74153.1| NADH dehydrogenase I chain E [Hydrogenivirga sp. 128-5-R1-1]
          Length = 112

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            ++E    +    ++Y     + A+IP L   QE    +   AI  ++  L +    +  
Sbjct: 6   LTKEVIEKIEYFKNKYLT--KEQAIIPSLHTIQETYRDIPDEAIRELSEYLQVPEADIEG 63

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           I +FY  F+      + H+++C   PC L G  K +++       +   
Sbjct: 64  IVSFYDMFRFEKK-AKNHIRLCRNLPCHLAGSRKFLKMLEKLTGAEAGG 111


>gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 626

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 27/156 (17%)

Query: 19  SEESAIWVNEVISRYPPSRCQSA-----------------------VIPLLMRAQEQEGW 55
           ++E    V+ ++   P S  + A                       ++P L    ++ GW
Sbjct: 11  TDEERAAVDALLGP-PESAWEGADDRTDTDLRWARGGRAARERRDLLLPGLHAINDRVGW 69

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
           +S  A++ +   L +       +ATFY  F + P      V VC    C  RG  ++   
Sbjct: 70  ISEGALDYLCRRLTVPPAEGYGVATFYAMFSVRPRPA-TVVHVCTDLACAARGSAEVCAG 128

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               +      R     + W+   C G C  AP  +
Sbjct: 129 LERDLGAAGSARAG--GVVWQPSPCLGLCERAPAAL 162


>gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B
           [Herminiimonas arsenicoxydans]
 gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans]
          Length = 567

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 21/205 (10%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +   P        +   V  ++     SR    +I  L + Q++ G ++ A +  +A  +
Sbjct: 20  KRQAPKGRRVDPVALEEVRALLG--DESRQADLLIEHLHKIQDKFGHLASAHLAALAQEM 77

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
            +A   V E+A+FY  F +   G  A     V+VC    C + G   L+      + ++ 
Sbjct: 78  RLAQTEVYEVASFYHHFDIVKEGEAAPQALTVRVCDGLSCEMGGARDLLAKLPKILGKE- 136

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
                   +      C G C  AP+V++G++     T + +   +     G     +P  
Sbjct: 137 --------VRVIAAPCVGRCEQAPVVVVGQNPIIQATVDSVATAV-----GSNQITQPVA 183

Query: 185 Q-IDRISSAPAGGLTSLLDNNSKKR 208
           + +D +  +  GG   L    S +R
Sbjct: 184 EVVDFLEYSKVGGYELLKKCISGER 208


>gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
 gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
          Length = 657

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 12  QPSSFSFSEESAIWVNEVISRYPP-SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDM 70
           QP     +E +      ++   P     +  +I  L R  +  G +    +  +A  +++
Sbjct: 15  QPEDAEMTEVAL-----LLGTRPAAGYRRDLLIEYLHRINDHFGVLHDRHLVALAKQMNL 69

Query: 71  AYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
               V E+A+FY  F++         R  ++VC +  C + G  +L+     ++   PL 
Sbjct: 70  PMAEVYEVASFYHHFEIVRGEGAQAPRLVLRVCDSLSCSMAGARELLAALPERLRAMPLG 129

Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
                 +  + V C G C  AP+ ++ +      T + + E +++
Sbjct: 130 GGQC-DVQVQAVPCVGRCEQAPVAVVHQCPVPHATVDAVLETVNS 173


>gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
 gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
          Length = 591

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 3   VRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQS-AVIPLLMRAQEQEGWVSRAAI 61
           +RR A+   +       + S   +  +I   PP   +S  +I  L    +    +    +
Sbjct: 21  LRRTAQRVSKLKGRQPDDVSLQELRALIGVPPPGGHRSDLLIEHLHLLNDHYRGLFERHL 80

Query: 62  EVVANILDMAYIRVLEIATFYTQFQLSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRN 118
             +A+ + +    V E+ATFY  F++   G       V+VC +  C +   + L+     
Sbjct: 81  VALASDMKLPMAEVFEVATFYHHFEVMRDGQSPAALTVRVCDSLSCAMARSDDLLARLTG 140

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            +           ++      C G C  AP V++G+    + T   + E +
Sbjct: 141 LLG---------ASVRVMAAPCLGRCEQAPAVLVGQRAVPNATTASVLEAV 182


>gi|119504733|ref|ZP_01626811.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium
           HTCC2080]
 gi|119459338|gb|EAW40435.1| formate dehydrogenase subunit gamma [marine gamma proteobacterium
           HTCC2080]
          Length = 165

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 19  SEESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           + E    +  +++  P   R    V+  L   Q   G+V   A+ VVA + ++       
Sbjct: 8   TAEQIENLKGLLT--PIAEREPGPVLLCLQAVQTHYGYVPEGAVAVVAEVCNVTRADAHG 65

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGTLS 134
           + ++Y+  + +P      V++C    C   G   L           P       +D    
Sbjct: 66  VFSYYSDLRKTPPPL-ISVRLCAAEACQAVGGRALAAAWGEACAADPNLAGATGTD---- 120

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
            E V C G C   P  ++      +++ E L+ 
Sbjct: 121 -EPVFCLGNCALGPAALVNDQLIGNVSVEALKS 152


>gi|260588548|ref|ZP_05854461.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583]
 gi|260541023|gb|EEX21592.1| putative Fe-hydrogenase, subunit gamma [Blautia hansenii DSM 20583]
          Length = 158

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 23  AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
              + E+I  Y   R    Q  ++ +L   QE EG ++    E  A  L +    +  I 
Sbjct: 7   KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVLSCII 66

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
             Y    L        + +C    C  +   +++++ R +        ++DG+       
Sbjct: 67  KRYP--SLKEADYAHEMVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 124

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           C   C  +P +++  + Y +LT E++  +++ 
Sbjct: 125 CLKQCRTSPNMLLDGELYANLTKEKVISLLEK 156


>gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 600

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 22  SAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
           S   V ++I   P    +  +I  L +  ++   +    +  +A  +++    V E+ATF
Sbjct: 40  SVAEVRQLIGHAP--HRRDLLIEHLHKLNDEYRALHDRHLVALAKEMNLPMAEVYEVATF 97

Query: 82  YTQFQLSPVGTRA---HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
           Y  F++           V+VC    C L G + L+    + +         +  +     
Sbjct: 98  YHHFEVVRGNDPVADITVRVCDGIACELAGAQNLLSKLPSILG--------NPNIKVAAA 149

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            C G C  AP+ ++ +      + +++   I 
Sbjct: 150 PCVGRCEQAPVAVVHQYPVIFASVDKVAAAIK 181


>gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42]
 gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Acidovorax sp. JS42]
          Length = 640

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 20  EESAIWVNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           + +   V +++   P     +  +I  L R  +  G +    +  +A  +++   +V E+
Sbjct: 39  DAAMADVAQLLGPRPADGYRRDLLIEYLHRLNDHFGVLHDRHLVALARQMNLPMAQVYEV 98

Query: 79  ATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
           A+FY  F++         R  V+VC +  C + G  +L+E    ++ Q        G + 
Sbjct: 99  ASFYHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGARELLEALPARL-QAAGQ----GDVQ 153

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              V C G C  AP+ ++ +          ++ +++
Sbjct: 154 VVAVPCVGRCEQAPVAVVHQCPVPH---AAVDAVLE 186


>gi|310778150|ref|YP_003966483.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747473|gb|ADO82135.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 154

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 4/152 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
           ++E    +   I      R +   + +L    ++ G++     E +A+   +  + +   
Sbjct: 3   TKEFYQNLENFIGEMEDKRNE---VQVLNFVMKEIGYIPLEVQEFIADKTGLFLVTIQNA 59

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
             F+ +++ S +     ++VC    C  +G   ++E    K+  +      D        
Sbjct: 60  IDFFPRYKTS-IDNTVEIKVCTGLGCTGKGGLLILEELEKKLGIEAGETTKDKKYRLTTQ 118

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
            C G C   P + IG   Y ++  E LE++I 
Sbjct: 119 RCFGKCAKGPNLSIGGVLYNNVNIENLEKLIK 150


>gi|331082154|ref|ZP_08331281.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402948|gb|EGG82513.1| hypothetical protein HMPREF0992_00205 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 153

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 5/150 (3%)

Query: 23  AIWVNEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
              + E+I  Y   R    Q  ++ +L   QE EG ++    E  A  L +    +  I 
Sbjct: 2   KEEIREIIDYYSKQRNPQEQENIVAMLREIQEAEGCITMKVQEEAAEALGVKPSVLSCII 61

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
             Y    L        V +C    C  +   +++++ R +        ++DG+       
Sbjct: 62  KCYP--SLKEADYAHEVVLCTGKSCQCKNSMEILDMVRKEFGISKDGISADGSFHLTTRN 119

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           C   C  +P +++  + Y +LT E++  ++
Sbjct: 120 CLKQCRTSPNMLLDGELYANLTKEKVLSLL 149


>gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666]
 gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas sp. JS666]
          Length = 566

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 9   EEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           +   P        +   V  ++     SR    +I  L + Q+  G +S A +  +A  +
Sbjct: 19  KRQAPKGRRVEPSALADVQRLLGS--ESRQADLLIEHLHKIQDHFGHLSAAHLAALAQEM 76

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
            +A   V E+ATFY  F +   G  A     V+VC    C + G   L++     +    
Sbjct: 77  RLAQTEVYEVATFYHHFDVVKEGEAAPAPLTVRVCDGLSCEMAGARDLLDRLPALLG--- 133

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
                   +      C G C  AP  ++G++   +
Sbjct: 134 ------REVRVIAAPCIGRCEQAPAAVVGQNPVPN 162


>gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
          Length = 571

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCM 105
           L   Q++ G++    +   +    +   R+ E+A+F+  ++L P  T   + +C    C 
Sbjct: 6   LNAIQQKFGYLPEEELRAFSKRSQIPMYRLHEVASFFPHYRLKPPATGTVL-ICRDLACH 64

Query: 106 LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           L G  +L++  +            D  +    V C G C  AP ++I        T  +L
Sbjct: 65  LAGASRLLQTLKA----TARET--DERIEVGGVSCLGQCDRAPALLINDQVIWGQTESQL 118

Query: 166 EEI 168
             +
Sbjct: 119 RAL 121


>gi|118116827|ref|XP_001236209.1| PREDICTED: hypothetical protein, partial [Gallus gallus]
          Length = 61

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 122 QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            K      D   +  EVEC GACVNAPMV I  + YEDLTP+ +E+IID    G+    +
Sbjct: 1   IKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEDIIDELKAGK--VPK 58

Query: 182 PGP 184
           PGP
Sbjct: 59  PGP 61


>gi|19070773|gb|AAL83989.1| NADH-ubiquinine oxido-reductase 24kD subunit [Oryza sativa]
          Length = 107

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 1   MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60
           + V R   E    + F F+ E+   +  ++  YP     +AV+P+L  AQ Q GW+  +A
Sbjct: 38  LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISA 97

Query: 61  IEVVANILDM 70
           +  VA +L +
Sbjct: 98  MNKVAEVLQV 107


>gi|307331427|ref|ZP_07610545.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306882926|gb|EFN13994.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 319

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 44  PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTP 103
           P L    ++ GW+S   ++ +   L +       +ATFY  F + P      V VC    
Sbjct: 58  PGLHALNDRVGWISEGGLDYLCRRLTVPPAEGYGVATFYAMFAVKPRPA-TVVHVCTDLA 116

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           C  RG  ++       +   P      G + W+   C G C  AP  +
Sbjct: 117 CAARGSARVCAELERDLG--PAGSAGSGAV-WQPSPCLGLCERAPAAL 161


>gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 573

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 22/199 (11%)

Query: 19  SEESAIWVNEVISRYPPSR-CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
             ++   V  +++  P +   +  +I  L    +  G +    +  +A +L ++   V E
Sbjct: 28  DAQALSTVQALLAARPQTPLRRDLLIEHLHTLNDHFGQLRTDHLAALAQLLRLSQAEVYE 87

Query: 78  IATFYTQFQLS--------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS 129
           +A+FY  F++         P      V+VC    C L G   L+      +  +      
Sbjct: 88  VASFYHHFEVVQAKADGSYPEPAPLTVRVCDGIACELTGARDLLTRLPALLGTE------ 141

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
              +      C G C  AP  ++ +    + TPE ++  + A  T       P P     
Sbjct: 142 ---VRVIAAPCIGRCEQAPAAVVHQCPVPNATPEAVQAAVTAGRT----KHEPAPYTTLP 194

Query: 190 SSAPAGGLTSLLDNNSKKR 208
           S   AGG  +L    S +R
Sbjct: 195 SYHDAGGYRTLRQCLSGER 213


>gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
 gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
          Length = 565

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           ++IPLL   Q + GW+ R  +E +A         +  + +FY  F  +P      V+VC 
Sbjct: 22  SLIPLLNAIQARCGWLPREELEALARQQKRPLYEIEGLVSFYPHFLTAPP-KDVTVRVCR 80

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDL 160
              C L+G E        +  +          +   E+ C G C  AP   + +     L
Sbjct: 81  DLACWLKGAEGPAAALTAQYAEAED-------VEVLEISCPGRCDMAPAATVNEKPV-RL 132

Query: 161 TPERLEEIIDAFSTGQGD 178
             E +   ++  + G  D
Sbjct: 133 --EDVPATVEQVAAGDRD 148


>gi|90569063|gb|ABD94422.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score =  101 bits (252), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/74 (75%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI   P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIAGDP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|160941290|ref|ZP_02088627.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435851|gb|EDP13618.1| hypothetical protein CLOBOL_06183 [Clostridium bolteae ATCC
           BAA-613]
          Length = 160

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 19  SEESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           +E       E++  Y   P    Q A++ +L   Q+  G +S   +E  A    +    V
Sbjct: 6   NEARDDQTREILDYYRGLPERSSQEAIVEMLRELQDIHGCISPYMLEQAAEAAGVRDSMV 65

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             I   Y   + +P      + +C    C  +G   +++  + ++       + DGT+  
Sbjct: 66  QAICKRYPSLKTAPY--NHEIILCTGRNCASKGSITVMDELKKRLGVGKNGISEDGTVCL 123

Query: 136 EEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +   C   C  AP VM+       L  E    I+     
Sbjct: 124 KTRNCLKNCRKAPNVMVDGRLCSGLDAE---GILRELKR 159


>gi|90569075|gb|ABD94428.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LIE+C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIEICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569071|gb|ABD94426.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI+VC+ KI   P
Sbjct: 1   ADMLGMAYVRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKVCKKKIASDP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569061|gb|ABD94421.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
 gi|90569065|gb|ABD94423.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
 gi|90569081|gb|ABD94431.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569077|gb|ABD94429.1| NADH dehydrogenase I chain E [Sinorhizobium meliloti]
          Length = 74

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAY+RVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYMRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|90569073|gb|ABD94427.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FALNEGGTLSWEEV 74


>gi|226939219|ref|YP_002794290.1| hypothetical protein LHK_00286 [Laribacter hongkongensis HLHK9]
 gi|226714143|gb|ACO73281.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Laribacter hongkongensis HLHK9]
          Length = 288

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            ++    ++ +I        + A++PLL   Q Q G++  AA+  +A  L  +   +  +
Sbjct: 3   DDDLLATLDALIGA--NQDRRGALLPLLHAIQAQFGYIPDAAVPRLAQALRQSRADIDGV 60

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
            +FY  F+ +P      +++C    C   G + L  +  +    +
Sbjct: 61  ISFYRDFRRTPPRA-HTLRLCRAESCQAMGADTLAHLLDHAPGCR 104


>gi|90569067|gb|ABD94424.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
 gi|90569069|gb|ABD94425.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
 gi|90569079|gb|ABD94430.1| NADH dehydrogenase I chain E [Sinorhizobium medicae]
          Length = 74

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIRICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|126680935|gb|ABO26551.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
          Length = 74

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/74 (74%), Positives = 61/74 (82%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI +C+ KI  +P
Sbjct: 1   ADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIMICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|126680955|gb|ABO26552.1| NADH dehydrogenase I chain E protein [Sinorhizobium meliloti]
          Length = 74

 Score = 99.0 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           A++L MAYIRV+E+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E LI++C+ KI  +P
Sbjct: 1   ADMLGMAYIRVIEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEP 60

Query: 125 LHRNSDGTLSWEEV 138
              N  GTLSWEEV
Sbjct: 61  FTLNEGGTLSWEEV 74


>gi|266619596|ref|ZP_06112531.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
           hathewayi DSM 13479]
 gi|288868846|gb|EFD01145.1| putative NADP-reducing hydrogenase, subunit A [Clostridium
           hathewayi DSM 13479]
          Length = 149

 Score = 98.7 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 27  NEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
            E++  Y   R   +   ++ +L   QE  G++       +A    +    +L++   Y 
Sbjct: 8   REIVDYYSSQRDAGSQENIVEMLREVQELYGYIPSEKTRAMAEATGVKQTLLLQLIKLYP 67

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            F+ +P G    + VC    C  +G  ++ E        K +     G       EC   
Sbjct: 68  SFKKAPYG--HCITVCTGARCGDKGSAEVFEAV-----LKAVEARESGAFKIVMKECLKQ 120

Query: 144 CVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C  AP +M+  D+Y  + P+ +  I+  +
Sbjct: 121 CKTAPNLMVDSDSYGCVKPDEVASILSNY 149


>gi|325263882|ref|ZP_08130615.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5]
 gi|324030920|gb|EGB92202.1| hypothetical protein HMPREF0240_02882 [Clostridium sp. D5]
          Length = 162

 Score = 98.3 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 5/153 (3%)

Query: 21  ESAIWVNEVISRYPP---SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
           +      E+   Y        Q  ++ +L   QE  G ++    E VA++  +    V  
Sbjct: 5   DKRKRAEEIFEYYGALENRGEQDVIVAMLRELQEVYGCITAGTAERVADVAGVKGAFVRA 64

Query: 78  IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
           +   Y    L        + VC    C  +G   + +V +  +  +    + DG +    
Sbjct: 65  LVRMYP--TLKEAAFLHEIIVCMGKTCSEKGGRDIYKVLQRVLKVRGNGISRDGKVRVRT 122

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
             C   C  AP ++I    Y  +T E+L  I+ 
Sbjct: 123 QSCLKHCGTAPNMLIDGKLYTGVTQEKLMGILK 155


>gi|331092182|ref|ZP_08341012.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401954|gb|EGG81528.1| hypothetical protein HMPREF9477_01655 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 157

 Score = 98.3 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q  ++  L   Q+  G +   A   +  I+ M    + +I + Y    L+    +  + V
Sbjct: 28  QETLVQFLRETQDIFGCIPADAKMQIGEIMGMKPSLIDKIISMYP--SLTAEKFQTEIIV 85

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C    C  +  +K++   +  +  +P     DG        C   C   P +MIG   Y 
Sbjct: 86  CSGASCSSKNAQKVLSEIQTLLQIRPGQVTKDGRYKLTAKPCMKQCKKGPNLMIGSTIYH 145

Query: 159 DLTPERLEEII 169
           ++  E+L+ ++
Sbjct: 146 NIDSEKLKTLL 156


>gi|323692272|ref|ZP_08106513.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum
           WAL-14673]
 gi|323503687|gb|EGB19508.1| hypothetical protein HMPREF9475_01376 [Clostridium symbiosum
           WAL-14673]
          Length = 184

 Score = 97.9 bits (243), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 11/163 (6%)

Query: 20  EESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           E     + E++S Y      S+   ++ ++   QE  GW+S    E+ A    +    + 
Sbjct: 23  ERREEELKEILSYYSSMTSPSSQENIVSMMQEIQELYGWISAEHKEMAAEAAGVKLSVID 82

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-----LHRNSDG 131
            I   Y    L P   R  +  C    C  R  + L++  + ++  K         +SD 
Sbjct: 83  CIMKLYK--SLKPAPYRHRMTFCTGKNCH-REGQNLLDTVKKELGIKGKIPASGALSSDK 139

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
            +  E  +C   C  AP  ++    Y     E +++++    +
Sbjct: 140 KVLLETRDCLKQCRTAPNFLLDGKLYSSAGEEEIKKLLKKLRS 182


>gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
          Length = 581

 Score = 97.9 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 2   SVRRLAEEEFQPSSFSFSEESAIWVNEVISR--YPPSRCQSAVIPLLMRAQEQEGWVSRA 59
           S RR  +    P       ++   V   +      P   +  +I  L   Q+  G +   
Sbjct: 28  SGRR--KPPVTPKGRQVDPQAIREVQAALEEAGSGPPDQRDLLIEHLHALQDFYGILIPR 85

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLIEV 115
            +  +A++  ++   V E ATFY  FQ+S        RA ++VC    CM++G E L+  
Sbjct: 86  HLAALADLARLSLAEVYETATFYAHFQMSRSDDLAPPRATIRVCDGVVCMIQGAEALLRE 145

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTG 175
            R          N+   +      C G C  AP  M+G+      TPERL       +  
Sbjct: 146 TRA---------NAPADVRVVPAPCMGWCDRAPAAMVGQRHISAATPERLVA-----AAV 191

Query: 176 QGDT-IRPGPQIDRISSAPAGGLTSL 200
           +G T   P   +    +   GG  +L
Sbjct: 192 EGSTDPIPITFLSLDETRIHGGYLTL 217


>gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 514

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 31/197 (15%)

Query: 4   RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPS-RCQSAVIPLLMRAQEQEGWVSRAAIE 62
           RRL      P       E    V  ++   P   R +  +I  L   Q++ G + R  + 
Sbjct: 12  RRLGPPAASP-------ECVAEVEALL---PDDFRRRDLLIENLHALQDRFGGLFRRHLT 61

Query: 63  VVANILDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK 119
            +A  + ++   V E+A+FY  F+L         A ++ C    C +R  E++       
Sbjct: 62  ALAEEMRLSPAEVQEVASFYAHFRLLDDDEAAPGAVLRRCTGPACAMRMPERV------- 114

Query: 120 IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
                     +G +  EE  C G C +AP  + GK    D        ++    +G+   
Sbjct: 115 ---------PEGVV-VEEAPCMGLCDHAPASLPGKGVVSDAILHEDYPVLARCRSGELPR 164

Query: 180 IRPGPQIDRISSAPAGG 196
                +++R      GG
Sbjct: 165 DEVLAELERAGLRGMGG 181


>gi|294775627|ref|ZP_06741136.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450569|gb|EFG19060.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 80

 Score = 96.0 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + TFYT F + P G +  + VC  T C LRG EKL E  +  +  +      DG    
Sbjct: 2   YGMVTFYTFFAMIPKG-KHPISVCMGTVCRLRGSEKLPEEFKRILGIEAGETTPDGKFFP 60

Query: 136 EEVECQGACVNAPMVMI 152
           + + C GA    P++MI
Sbjct: 61  DCLWCVGAYGLLPVIMI 77


>gi|167761209|ref|ZP_02433336.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
 gi|167660875|gb|EDS05005.1| hypothetical protein CLOSCI_03614 [Clostridium scindens ATCC 35704]
          Length = 155

 Score = 95.6 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 5/153 (3%)

Query: 24  IWVNEVISRYPPSRCQS---AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             + E+   Y      S    +I +L R QE  G+VS+   E VA +  +    V  I  
Sbjct: 4   AILQELYDYYKEDHSLSQSELIIAMLTRIQETVGYVSKDVQEEVARLTGVNRGYVAAIIK 63

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
                 L     R  ++VC +  C  RG   L++  +  +  KP     DG        C
Sbjct: 64  --NLPHLHAQAFRHEIRVCISDRCKARGGSDLLKKLQKLLKIKPGQVTKDGVFLLNTEYC 121

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              C++ P + I    YE++   +L ++++   
Sbjct: 122 MHNCMHGPNIKIDGRIYENVQISQLPQLLEKLR 154


>gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei
           87.22]
          Length = 610

 Score = 95.6 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  ++P L    ++ GW+S  A++ +   L +       +ATFY  F + P      + 
Sbjct: 54  RRDLLLPGLHALNDRIGWISGGALDYLCRRLTVPPAEAYGVATFYAMFSVRPRPA-TVLH 112

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           VC    C   G   L      ++            +S E   C G C  AP  +
Sbjct: 113 VCTDLACAAAGAAGLCAGIEARLGPGSG-------VSVERSPCLGLCERAPAAL 159


>gi|169825064|ref|YP_001692675.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
           29328]
 gi|167831869|dbj|BAG08785.1| putative NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
           29328]
          Length = 159

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++E +  +     + A + +    Q+  G VS +  + +A   D+    +  I  F 
Sbjct: 12  KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFDIDEKYIKTIIKFI 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
              + S V     +  C    C   G  ++++  + ++       ++DG +      C  
Sbjct: 71  PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C + P +MI    Y  +  E+ +E+++   
Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159


>gi|167816878|ref|ZP_02448558.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 91]
          Length = 92

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCG 100
           +++ +L   Q+  G+V  A +E +A  L+++   V  + T+Y  F+ +P      +++C 
Sbjct: 21  SLVAILHAIQDDAGYVPPACVEPLAKALNLSRAEVHGVLTYYHHFRTAPP-AHVTIRLCR 79

Query: 101 TTPCMLRGCEKL 112
              C   G E L
Sbjct: 80  AEACRSMGGEAL 91


>gi|302379485|ref|ZP_07267972.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234257|ref|ZP_07320902.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302312830|gb|EFK94824.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494621|gb|EFL54382.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 159

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++E +  +     + A + +    Q+  G VS +  + +A   ++    +  I  F 
Sbjct: 12  KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKFI 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
              + S V     +  C    C   G  ++++  + ++       ++DG +      C  
Sbjct: 71  PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C + P +MI    Y  +  E+ +E+++   
Sbjct: 129 KCKDGPNIMINGKFYHHMDAEKTKEVLEKIK 159


>gi|154503789|ref|ZP_02040849.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149]
 gi|153795889|gb|EDN78309.1| hypothetical protein RUMGNA_01613 [Ruminococcus gnavus ATCC 29149]
          Length = 158

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 39  QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQV 98
           Q+ ++  L   Q+  G +   A E +A+I+ +    +  +   Y    LS    +  + +
Sbjct: 30  QAILVEFLRETQDIFGCIPNDAKEQIASIMQVKPALIDTLIRLYP--SLSSQTYQKEIIL 87

Query: 99  CGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYE 158
           C  + C  +    L+     K+  +     SDGT      +C   C   P + +G   Y 
Sbjct: 88  CTGSTCSSKQSALLLRKLEQKLQIRQGEVTSDGTYLLRTQKCFKQCGQGPNMKVGDKMYH 147

Query: 159 DLTPERLEEI 168
            +T E ++++
Sbjct: 148 HVTAELIDQL 157


>gi|254883634|ref|ZP_05256344.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
 gi|319642295|ref|ZP_07996954.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
 gi|254836427|gb|EET16736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 4_3_47FAA]
 gi|317386151|gb|EFV67071.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides sp. 3_1_40A]
          Length = 80

 Score = 92.5 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             + T+YT F + P G +  + VC  T C +RG EKL E  +  +  +      DG    
Sbjct: 2   YGMVTYYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFP 60

Query: 136 EEVECQGACVNAPMVMI 152
           + + C GA    P++MI
Sbjct: 61  DCLWCVGAYGLPPVIMI 77


>gi|297586998|ref|ZP_06945643.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
           53516]
 gi|297574979|gb|EFH93698.1| probable NADH-ubiquinone oxidoreductase [Finegoldia magna ATCC
           53516]
          Length = 159

 Score = 92.5 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 23  AIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
              ++E +  +     + A + +    Q+  G VS +  + +A   ++    +  I  F 
Sbjct: 12  KEKLDETVESFGKGSQEGAKVSI-RNCQDFFGCVSISHQKQIAQAFEIDEKYIKTIIKFI 70

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
              + S V     +  C    C   G  ++++  + ++       ++DG +      C  
Sbjct: 71  PSIKESKV--EYEIVCCSGPRCAKNGSMEVLKTVKKELAMDFNETSADGKIRLRTQNCFK 128

Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C + P +MI    Y  +  E+ +E+++   
Sbjct: 129 KCKDGPNIMINGKLYHHMDAEKTKEVLEKIK 159


>gi|150002992|ref|YP_001297736.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149931416|gb|ABR38114.1| NADH-ubiquinone oxidoreductase subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 77

 Score = 91.7 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFYT F + P G +  + VC  T C +RG EKL E  +  +  +      DG    + +
Sbjct: 2   VTFYTFFAMIPKG-KHPISVCMGTVCRVRGSEKLPEEFKRILGIEAGETTPDGKFFPDCL 60

Query: 139 ECQGACVNAPMVMI 152
            C GA    P++MI
Sbjct: 61  WCVGAYGLPPVIMI 74


>gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246]
          Length = 686

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 46  LMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPV-GTRAHVQVCGTTPC 104
           L   Q + G++    +  +A+ +++   R+ E+++F+  F+L         ++VC    C
Sbjct: 6   LRDIQNRFGFLPDKELRALAHEINVPLYRIEEVSSFFPAFKLERTNPPEIEMRVCRDLTC 65

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNS--DGTLSWEEVECQGACVNAPMVMIGKD------- 155
             RG   L++  R  +       +     ++  E V C G C  AP V + K        
Sbjct: 66  HHRGAAALLDE-RTGLPVLAAELSEATGKSVCVEGVSCLGRCDRAPAVWVEKRPMPEHVH 124

Query: 156 --TYEDLTPERLEEIIDAFSTGQGD-------TIRPGPQIDRISSAPAG 195
              Y     E LE ++   +  +         T  P    +R  + P G
Sbjct: 125 AWVYAGRDGEFLEGVLRDLAADRDPPEPDTDATYEPHTNTNRGYAIPKG 173


>gi|225569331|ref|ZP_03778356.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM
           15053]
 gi|225162130|gb|EEG74749.1| hypothetical protein CLOHYLEM_05413 [Clostridium hylemonae DSM
           15053]
          Length = 154

 Score = 90.2 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 27  NEVISRYPPSR---CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYT 83
           N++   Y   +       VI +L   Q  EG + + A E  A +  +    V  +     
Sbjct: 7   NDIFDYYREEKTMTQSELVIAVLTELQAIEGCIPKEAREAAAELAGVNPGYVSAVIK--- 63

Query: 84  QFQLSPVGT---RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
             +L  +     R  ++VC +  C  +G + +++  +  +  +P     D       V C
Sbjct: 64  --RLPHLHEQSFRHEIKVCISDRCKNKGGQDVLKEIQRILKIRPGQVTRDKRFLLTTVYC 121

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
              C   P + I    ++++T   +  I+  +S
Sbjct: 122 MHYCTKGPNIQIDGRLFQNVTAAEVPSILKKYS 154


>gi|218672651|ref|ZP_03522320.1| NADH dehydrogenase subunit E [Rhizobium etli GR56]
          Length = 62

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 67  ILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +LDMAYIRVLE+ATFYTQFQL PVGTRAHVQVCGTTPCMLRG E L+ VC++KIH  P  
Sbjct: 1   MLDMAYIRVLEVATFYTQFQLHPVGTRAHVQVCGTTPCMLRGSEALMSVCKSKIHAHPFE 60


>gi|269119260|ref|YP_003307437.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
           [Sebaldella termitidis ATCC 33386]
 gi|268613138|gb|ACZ07506.1| NADH:ubiquinone oxidoreductase 24 kD subunit- like protein
           [Sebaldella termitidis ATCC 33386]
          Length = 150

 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 26  VNEVISRYP-PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQ 84
           + ++I+ Y    +  + +  +L   Q Q G +     + +A  + +    V E+    + 
Sbjct: 4   IKDLINNYLLVKKDDTDLFDVLHFVQSQIGCIPEDIQKFIAARMCLELSEVHEVIEISSS 63

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           FQ         V VC  + C ++G  +++ +   ++         D ++      C  AC
Sbjct: 64  FQEKKQ---ISVTVCSGSGCTMKGSMEILGIISKELGVNLND--EDKSVFLTVKNCFKAC 118

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
                + +  + + ++T   L  +++   
Sbjct: 119 SYGVNIEVNGELFHNVTVSTLGRVLEKIK 147


>gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
 gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
          Length = 566

 Score = 88.6 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           VA  L +    V   A+F+  F  +P G R  V+VC    C        +      +   
Sbjct: 53  VARTLGLPAAAVEGPASFFADFS-APRGARH-VRVCSAAACFAATGGAHVPEVEAALGVP 110

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
              ++ DGT+S + V C G C   P  ++G +      P+   +++
Sbjct: 111 SGSKSPDGTVSLQAVRCLGYCFAGPAALVGDEACA--GPDLAAQLL 154


>gi|167769022|ref|ZP_02441075.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM
           17241]
 gi|167668662|gb|EDS12792.1| hypothetical protein ANACOL_00344 [Anaerotruncus colihominis DSM
           17241]
          Length = 157

 Score = 88.6 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 22  SAIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
               + E+++ Y   R    Q  +I LL   Q   G V  AA    A  +  A   V  +
Sbjct: 5   EQEQLQELLTYYKSIRETGGQELLIALLREIQSLCGCVPPAAQAAAAAAMKTAPAAVAAL 64

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
                    +P      + VC    C  +G   +++     +  K      DG    +  
Sbjct: 65  VKRLPGLNAAPYA--HRIVVCTGPRCAAKGGAAVLKAFETALGIKAGQVTDDGRFLLDTQ 122

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
            C   C +AP   I  D ++ + P+ + EI+  +
Sbjct: 123 NCLKQCGSAPNTRIDNDLFKQVAPDLVPEILAQY 156


>gi|60687924|gb|AAX30295.1| SJCHGC02806 protein [Schistosoma japonicum]
          Length = 82

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           G E ++   +  +  +P     D   +  EVEC GACVNAPM+ I  D Y
Sbjct: 6   GSEAILNTLKKTLGIEPGQTTPDKMFTLTEVECLGACVNAPMLQINDDYY 55


>gi|218260393|ref|ZP_03475732.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii
          DSM 18315]
 gi|218224547|gb|EEC97197.1| hypothetical protein PRABACTJOHN_01395 [Parabacteroides johnsonii
          DSM 18315]
          Length = 81

 Score = 87.5 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 23 AIWVNEVIS---RYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           I +NE+++    +        +I +L  AQ   G++ R   E++A+ L +   RV  + 
Sbjct: 10 QIKINELLAVCDEHNND--PGELINILHAAQGIFGYLPREVQEIIASRLHIPVSRVYGVV 67

Query: 80 TFYTQFQLSPVGTR 93
          TFY+ F ++P G  
Sbjct: 68 TFYSFFTMTPKGKY 81


>gi|237738151|ref|ZP_04568632.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420031|gb|EEO35078.1| NADH dehydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 151

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 4/151 (2%)

Query: 19  SEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
            +E    + E I      +     + +L    E+   + +   + +A+   +  I +   
Sbjct: 3   DKEFYKELEEFIENLRDKKDD---VKILNFVIEKIDSIPKEVQKFIADKTGLMEISIENT 59

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
             FY +F+      +  V VC    C   G +++       +       + DG +     
Sbjct: 60  INFYPKFRNRVSNIK-EVAVCTGMSCGPAGGQEIYNELVKILEVDSNGLSKDGKIMLSNK 118

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
            C G C   P V I  + Y  ++ + ++  +
Sbjct: 119 RCFGRCAKGPNVSIDGEIYSLMSLQDVKRKL 149


>gi|289810294|ref|ZP_06540923.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 73

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
              AI  +A++L +    V  +ATFY+Q    PVG R  ++ C +  C + G + +    
Sbjct: 2   PDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVG-RHVIRYCDSVVCHITGYQGIQAAL 60

Query: 117 RNKIHQKPLHRNSD 130
                       +D
Sbjct: 61  EKNT---QHQTGAD 71


>gi|210612660|ref|ZP_03289408.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787]
 gi|210151462|gb|EEA82470.1| hypothetical protein CLONEX_01610 [Clostridium nexile DSM 1787]
          Length = 158

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 5/138 (3%)

Query: 24  IWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             + E+ S Y   P    Q  V+ LL   Q+  G++S    E V  +  ++   +  +  
Sbjct: 8   DEIEEIFSYYSQQPDKGSQEMVVALLRELQDAHGFISLELKERVEQVTGVSPNYLKCLIR 67

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
            Y    L    T   +  C    C  +    ++   + ++  +    + DG        C
Sbjct: 68  MYP--TLKEENTVHEIIACTGERCGKKEGGAILNALKRELRIQKNGVSIDGKFKLRTQNC 125

Query: 141 QGACVNAPMVMIGKDTYE 158
              C  AP ++I    Y 
Sbjct: 126 LKKCGTAPNIIIDDVVYS 143


>gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 559

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
               + V+  L    E  G ++ A +  VA+ L      V   A+FY     +P G R  
Sbjct: 13  GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYADL-TAPQGLRH- 70

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+VC  T C +    + +      +  +   R+ +G +S +   C G C  +P  + G  
Sbjct: 71  VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 129

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
                TP     + +   +     +   P   R +S
Sbjct: 130 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 160


>gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 560

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 36  SRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
               + V+  L    E  G ++ A +  VA+ L      V   A+FY     +P G R  
Sbjct: 14  GHEGTGVLERLRAVAEGSGSITGADVRRVADELGWPVAAVAGAASFYADL-TAPQGLRH- 71

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+VC  T C +    + +      +  +   R+ +G +S +   C G C  +P  + G  
Sbjct: 72  VRVCRGTSCFVSSYGRNVAQVEAALGLRCGMRDPEGIVSLDGAYCLGHCYASPAALNGS- 130

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
                TP     + +   +     +   P   R +S
Sbjct: 131 -----TPMTGRRLGERLRSDTEAEVLAQPIPFRAAS 161


>gi|89070604|ref|ZP_01157888.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
 gi|89043821|gb|EAR50022.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
          Length = 98

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 34  PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSP---- 89
           P  R +  +I  L   Q++ G++S A +  +A  L +    V E+A+FY  F L      
Sbjct: 4   PGPRRRDLLIEYLHLVQDRYGYLSAAHLRALAEELRVGQAEVWEVASFYAHFDLVKEDEL 63

Query: 90  VGTRAHVQVCGTTPC 104
                 ++VC +  C
Sbjct: 64  PPPALTIRVCESLSC 78


>gi|154496302|ref|ZP_02034998.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC
           29799]
 gi|150274385|gb|EDN01462.1| hypothetical protein BACCAP_00590 [Bacteroides capillosus ATCC
           29799]
          Length = 196

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 39  QSAVIPLLMRAQEQEG-WVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
           Q+ ++ LL   Q   G  + + A+E +A  L      +  +   Y   +   V  R  + 
Sbjct: 67  QNELVQLLRETQALYGGVIPQQALEEIAQALGFRASFLPAVLKRYPSIKTESV--RHSLT 124

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY 157
           VC    C  R   +L++    +   +P    + G    +   C   C   P V      Y
Sbjct: 125 VCQGPSCGRR--RELLDFLSREYGVEPGGVAAAG-FRLQTGGCMKNCGKGPCVRWDGTVY 181

Query: 158 EDLTPERLEEIIDA 171
             +TPE L  +I+ 
Sbjct: 182 TGMTPESLRALIEK 195


>gi|167746358|ref|ZP_02418485.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662]
 gi|167654351|gb|EDR98480.1| hypothetical protein ANACAC_01067 [Anaerostipes caccae DSM 14662]
          Length = 150

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 25  WVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATF 81
            V+E++  Y      +    ++  L   QE  G + +A  E  A  L +    +      
Sbjct: 4   RVDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKK 63

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--E 139
           Y  F    V  +  V+VC    C      +++             +  D  +S + V   
Sbjct: 64  YPGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAA----GEEKERDQGISIKIVKGR 117

Query: 140 CQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
           C   C   P ++I    +  +TPE+   +I   
Sbjct: 118 CTRRCGKGPNLIINGVLHHHMTPEQAAGLIRRL 150


>gi|253581891|ref|ZP_04859115.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836240|gb|EES64777.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 157

 Score = 82.1 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
               ++E  I + E I+     +     + +L    E+   +     + +A    +  I 
Sbjct: 3   KMEVNKEFYIELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIAEKTGLLEIS 59

Query: 75  VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +     FY +F+    G +   V VC    C + G +   E     +       + DG +
Sbjct: 60  IENTINFYPKFRNKVSGKQLKEVSVCVGMTCGVYG-KGFYEELAEILEIDEKGISKDGKI 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIID 170
                 C G C   P V I  + Y  +T   L+  ++
Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMTMAELKRRLE 155


>gi|300860741|ref|ZP_07106828.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|295112906|emb|CBL31543.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Enterococcus sp.
           7L76]
 gi|300849780|gb|EFK77530.1| conserved domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|315145700|gb|EFT89716.1| NAD-dependent formate dehydrogenase, gamma subunit family protein
           [Enterococcus faecalis TX2141]
 gi|315160213|gb|EFU04230.1| NAD-dependent formate dehydrogenase, gamma subunit family protein
           [Enterococcus faecalis TX0645]
          Length = 107

 Score = 81.7 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 42  VIPLLMRAQ--EQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
           ++ +L+  Q   +EG++ +   ++VA  L +   RV EI +FY   +  P   +  +++C
Sbjct: 23  ILNILIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQ-AKYVLKIC 81

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQ 122
            +TPC   G   + EV    +  
Sbjct: 82  NSTPCHYTGGAMVAEVLETILEV 104


>gi|225407903|ref|ZP_03761092.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
           DSM 15981]
 gi|225042582|gb|EEG52828.1| hypothetical protein CLOSTASPAR_05124 [Clostridium asparagiforme
           DSM 15981]
          Length = 158

 Score = 81.7 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 19  SEESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           + ++ + + E++  Y     +++   V+ +L   Q+ +G++S   +   A    +    V
Sbjct: 6   TRDTEVQIREILDYYGGREDRASQETVVEMLRELQDAQGFLSPGILAAAAETAGVKESTV 65

Query: 76  LEIATFYTQFQLSP----VGTRAHVQVCGTTPCMLRGCEKLI--EVCRNKIHQKPLHRNS 129
             I       +  P       R  + VC    C   G   +   +  R ++   P   ++
Sbjct: 66  RAIL------KRCPSLKTAPYRHEIVVCLGKNC---GGRNIEVLQELRRRLKTGPDGISA 116

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERL 165
           DG +      C  +C  AP VM+       ++ E +
Sbjct: 117 DGRVKVSTRSCLKSCRTAPNVMVDGKICSGVSAEGI 152


>gi|317063161|ref|ZP_07927646.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313688837|gb|EFS25672.1| NADH dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 157

 Score = 81.7 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 6/151 (3%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
               ++E    + E I+     +     + +L    E+   +     + +A+   +  I 
Sbjct: 3   KMEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEIS 59

Query: 75  VLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           +     FY +F+    G +   V +C    C + G +   +     +       + DG +
Sbjct: 60  IENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYG-KGFYDELAEILEVDENGVSKDGKI 118

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLT-PE 163
                 C G C   P V I  + Y  +T PE
Sbjct: 119 LLTTKRCFGRCNKGPNVSIDGEIYSMMTMPE 149


>gi|257468913|ref|ZP_05633007.1| NADH dehydrogenase (ubiquinone), 24 kDa subunit [Fusobacterium
           ulcerans ATCC 49185]
          Length = 154

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 6/150 (4%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              ++E    + E I+     +     + +L    E+   +     + +A+   +  I +
Sbjct: 1   MEVNKEFYTELEEFINGLKDKKND---VKILNFVLEKLDAIPVEVQKFIADKTGLLEISI 57

Query: 76  LEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
                FY +F+    G +   V +C    C + G +   +     +       + DG + 
Sbjct: 58  ENTINFYPKFRNKAGGKKIKEVSICVGMTCGVYG-KGFYDELAEILEVDENGVSKDGKIL 116

Query: 135 WEEVECQGACVNAPMVMIGKDTYEDLT-PE 163
                C G C   P V I  + Y  +T PE
Sbjct: 117 LTTKRCFGRCNKGPNVSIDGEIYSMMTMPE 146


>gi|225572091|ref|ZP_03780955.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040425|gb|EEG50671.1| hypothetical protein RUMHYD_00385 [Blautia hydrogenotrophica DSM
           10507]
          Length = 155

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 5/155 (3%)

Query: 22  SAIWVNEVISRYPPSRC---QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEI 78
               + E+   Y        Q +++ +    QE  G++     E +A    +    +  I
Sbjct: 3   EQETIEEIFEYYKGRDDCASQESLVDMFREIQEVYGYIPAELKERMAREFCVKETFLNCI 62

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
              Y    L        V VC    C  +   +L+   R  +  +    + DG +     
Sbjct: 63  IQRYP--SLKEQKITHTVIVCSGERCRNKNAAELLAYIRKSLKIQKNGSSEDGKVCLRTQ 120

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
            C   C  +P + +  +    +T E+ ++I+ ++S
Sbjct: 121 NCLRHCRTSPNISVDGEIQTGMTCEKWKQILQSWS 155


>gi|317470766|ref|ZP_07930150.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA]
 gi|316901755|gb|EFV23685.1| hypothetical protein HMPREF1011_00497 [Anaerostipes sp. 3_2_56FAA]
          Length = 150

 Score = 81.3 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 26  VNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFY 82
           V+E++  Y      +    ++  L   QE  G + +A  E  A  L +    +      Y
Sbjct: 5   VDEILRFYERQGKPAGQEEILSALREIQEVLGCIPKAVQEEAALRLGVKPSFLAAFVKKY 64

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--EC 140
             F    V  +  V+VC    C      +++             +  D  +S + V   C
Sbjct: 65  PGF--KEVSEKYEVKVCTGPSCGAGKALEILRAVEAA----GEEKERDQGISIKIVKGRC 118

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
              C   P ++I    +  +TP++   +I   
Sbjct: 119 TRRCGKGPNLIINGVLHHHMTPDQAAGLIRRL 150


>gi|31747591|gb|AAO38265.1| probable Fe-hydrogenase gamma subunit [Leptospirillum ferrooxidans]
          Length = 73

 Score = 81.3 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 112 LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           L++  + ++  +P     D   + E V C G+C  APM M+    Y  L+P+++  +I  
Sbjct: 2   LVDKVKEELKIEPGENTEDMLFTLEPVSCLGSCALAPMAMVTDTAYGKLSPDKMLGLIKD 61

Query: 172 FSTGQGDTIRPG 183
             +       P 
Sbjct: 62  LESEHLSASEPA 73


>gi|325001506|ref|ZP_08122618.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1]
          Length = 118

 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 48  RAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPC 104
              + EGW+S  A+  VA  L +    V  +ATFY  F + P   R  V VC    C
Sbjct: 61  AVHDAEGWLSEGALNHVARTLQVPPAEVYGVATFYAMFSVEPRAPR-VVHVCDDVAC 116


>gi|153816474|ref|ZP_01969142.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756]
 gi|317500205|ref|ZP_07958436.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145846216|gb|EDK23134.1| hypothetical protein RUMTOR_02727 [Ruminococcus torques ATCC 27756]
 gi|316898376|gb|EFV20416.1| hypothetical protein HMPREF1026_00378 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 160

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 5/150 (3%)

Query: 24  IWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             + E+ + Y   R +S+   VI LL   QE EG ++      V    ++    +  +  
Sbjct: 7   EQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLNCLIK 66

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
            Y    +        +  C    C  +    +++  R ++  K    +SDG        C
Sbjct: 67  MYP--SIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELRTRNC 124

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              C  +P + I +  Y     + ++ +++
Sbjct: 125 LKQCRTSPNMYIDRKLYSGEQLKDIKTLLN 154


>gi|331087567|ref|ZP_08336498.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330400707|gb|EGG80311.1| hypothetical protein HMPREF1025_00081 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 156

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 5/150 (3%)

Query: 24  IWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
             + E+ + Y   R +S+   VI LL   QE EG ++      V    ++    +  +  
Sbjct: 3   EQIEEIFAYYGKQRDKSSQEMVIALLRELQEAEGCITPELKVRVIETTEITDKFLNCLIK 62

Query: 81  FYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
            Y    +        +  C    C  +    +++  R ++  K    +SDG        C
Sbjct: 63  MYP--SIKEAKQAHEIIACTGERCGKKDGMTILQNLRRELGIKKDGISSDGRFELRTRNC 120

Query: 141 QGACVNAPMVMIGKDTYEDLTPERLEEIID 170
              C  +P + I +  Y     + ++ +++
Sbjct: 121 LKQCRTSPNMYIDRKLYSGEQLKDIKTLLN 150


>gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
 gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
          Length = 503

 Score = 79.8 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 20/113 (17%)

Query: 38  CQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97
            +  V+ LL    E+ G +       V+    +    V  +A+FYT       G +   +
Sbjct: 7   KRKVVLQLL----EEHGGMRPGVARKVSEETGVPEADVYGVASFYTLLSR--PGAKT--R 58

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           VC    C++ G E++I   + +                E V C G C  AP  
Sbjct: 59  VCQGLTCVMAGAEQVIAELKAR-----GEE-------VEAVSCLGQCDRAPAA 99


>gi|307069591|ref|YP_003878068.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus
           Zinderia insecticola CARI]
 gi|306482851|gb|ADM89722.1| putative NADH:ubiquinone oxidoreductase, chain E [Candidatus
           Zinderia insecticola CARI]
          Length = 154

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 60/140 (42%), Gaps = 5/140 (3%)

Query: 16  FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
              ++     + +   ++P    +S ++ +L   +++  +++   ++ ++ +L +++I+V
Sbjct: 1   MFLNKYIYKNIKKEFKKFPLENKRSIILYILRIFEKKYNFINNKILKKISKVLKISFIQV 60

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            EI+ FY    L     +  + +C +  C L    K+I   + +I +K            
Sbjct: 61  KEISNFYKMCNLKKK-VKYKIFICNSISCYLNNSLKVINFLKKEIFKKKKK----KLFYI 115

Query: 136 EEVECQGACVNAPMVMIGKD 155
            +  C G C  +P  +I   
Sbjct: 116 HKSSCMGLCSFSPFFLINNK 135


>gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
          Length = 516

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 19/107 (17%)

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
           S   +  +A   ++    V  ++TFY           + VQVC   PC+L+G  ++    
Sbjct: 21  SDDELRKIAEKHNLPLSTVKMLSTFYFH-------DYSEVQVCMGLPCILKGAREVTREL 73

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPE 163
             +   K                C G C   P V +G   Y  +  +
Sbjct: 74  ERR-GIKY-----------SVTYCLGYCDKGPAVRMGDRYYTFVNGD 108


>gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca]
 gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 537

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            +  C +T C      ++ +   + + +  L   +D  +    V C G C   PMV +  
Sbjct: 21  RIHCCTSTGCQASESLEVKKAMEDALKESGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               YE +TPE    II+A   G+   ++  P 
Sbjct: 77  NGIHYEKVTPEDAPSIIEALKGGEAKPVQGDPN 109


>gi|255281710|ref|ZP_05346265.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267777|gb|EET60982.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 148

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 45  LLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT----RAHVQVCG 100
           +L   QE  G++S    +  A  L +       I T     +  P       +  V VC 
Sbjct: 1   MLREIQEFYGFISPEMKQHAAEALGVK----EGILT--CLIRRFPSLKEADYQHTVTVCT 54

Query: 101 TTPCMLRGCEKLIEVCRNKIHQKPL------HRNSDGTLSWEEVECQGACVNAPMVMIGK 154
              C  +   K+++  + ++             + +G    +   C   C  AP +MI  
Sbjct: 55  GERCGRKQGMKILQEVKRELQIDEEYSSRQPMLSKNGKCLLKTQNCLKQCRTAPNLMIDG 114

Query: 155 DTYEDLTPERLEEII 169
             Y  +  E +  ++
Sbjct: 115 KVYHQIKLEDVHNLL 129


>gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
 gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
          Length = 537

 Score = 72.1 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            +  C +T C      ++ +   + +    L   +D  +    V C G C   PMV +  
Sbjct: 21  RIHCCTSTGCQASESLEVKKAMEDALKGSGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               YE +TPE    II+A   G+   ++  P 
Sbjct: 77  NGIHYEKVTPEDAPSIIEALQGGEAKPVQGDPD 109


>gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341]
          Length = 531

 Score = 71.3 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            ++ C    C      ++ +   + + +  L   +D  +    V C G C   PMV +  
Sbjct: 21  RIRCCTAAGCQASESLEVKKAMEDALKESGLE--AD--VQIVGVGCMGFCGRGPMVEVEP 76

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
               YE +TPE    II+A   G+   ++  P 
Sbjct: 77  NGIHYEKVTPEDAPSIIEALKGGEAKPVQGDPN 109


>gi|330945473|gb|EGH47028.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 85

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 69  DMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ 122
           D+    V  +ATFY+Q    PVG R  ++VC +  C + G E +++  ++ +  
Sbjct: 6   DIPASDVEGVATFYSQIFRQPVG-RHIIRVCNSMVCFIGGHENVVDEIKSSLGI 58


>gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO]
 gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO]
          Length = 653

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD--GTLSWEEVECQGACVN 146
           P   +  V+VC  T C ++G   L+    + +      R  D    +      C   C  
Sbjct: 569 PKEEKTVVRVCLGTSCYMKGSYNLLSQLIDYV------RTEDLSDEVEITGTFCLEHCGK 622

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFST 174
           +P VM+      + T E+++E+++ ++ 
Sbjct: 623 SPNVMVNDKLISEATFEKIKEVLEKYAK 650


>gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score = 69.0 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + HV VCG T C   GC+  ++  +  I  + L       +      C G C   P++ +
Sbjct: 30  KYHVLVCGGTGCHSVGCQNTLQALQKAIDSQGLQDT----VKLVVTGCMGTCEMGPVITV 85

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176
                 Y  + PE  EE++ +    G+
Sbjct: 86  FPDGYYYCRVQPEDAEELVTSHLKEGK 112


>gi|226323628|ref|ZP_03799146.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758]
 gi|225207812|gb|EEG90166.1| hypothetical protein COPCOM_01403 [Coprococcus comes ATCC 27758]
          Length = 64

 Score = 68.6 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
                   +E+I+ +  +R + ++IP++   QE+  ++    +  VA  + +   +   
Sbjct: 2  LDASYYQKTDEIIAMH--TREERSLIPIIQDIQEEYRYLPPELLTYVAKQIGITEAKAYS 59

Query: 78 IATF 81
          +A+F
Sbjct: 60 VASF 63


>gi|220931056|ref|YP_002507964.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
 gi|219992366|gb|ACL68969.1| hypothetical protein Hore_02080 [Halothermothrix orenii H 168]
          Length = 80

 Score = 68.6 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            +  V+VC  T C L G   +I+  +N   + K         +  + V C  +C   P V
Sbjct: 3   EKITVEVCVGTSCHLMGSPAIIDYLKNLPDNIKD-------KIEIKHVSCMNSCDRGPRV 55

Query: 151 MIGKDTYEDLTPERLEEII 169
           M+      + TPER++E I
Sbjct: 56  MVNDTVIYNATPERVKEAI 74


>gi|254416932|ref|ZP_05030680.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
           7420]
 gi|196176296|gb|EDX71312.1| hypothetical protein MC7420_3427 [Microcoleus chthonoplastes PCC
           7420]
          Length = 207

 Score = 67.8 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           SP  T+A V VC  + C  RG  K+ +V  N +      RN D  ++ ++  C   C   
Sbjct: 104 SPQKTKASVMVCKKSSCRKRGAAKVHQVMNNTLR----DRNLDDQVAIKDTGCMKQCKKG 159

Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
           P  +VM  K  Y  + PE +  ++D      G  ++P   + + S+   GG
Sbjct: 160 PCMVVMPDKARYNKVAPEDVPTLVDKHF---GSKLKPEANVSQRSTVRCGG 207


>gi|239626889|ref|ZP_04669920.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517035|gb|EEQ56901.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 155

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 19  SEESAIWVNEVISRY---PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRV 75
           +E++   V E++  Y   P    Q  ++ +L   Q+  GW+  + +E  A    +    +
Sbjct: 24  NEKTDREVREILDYYKELPERGSQEVIVSMLRELQDVCGWIGPSVLEEAAQTAGVKESLI 83

Query: 76  LEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             I   Y    L        + VC    C  R   KL++  R ++       + DG +  
Sbjct: 84  EIIMKRYP--SLKKSPYVHEITVCTGQNCASRDNLKLLQELRQRLKIGGDGISQDGRIRV 141

Query: 136 EEV 138
           +++
Sbjct: 142 KKI 144


>gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 541

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + ++ VC  T C+  G E ++   ++++    L       +  ++  C G C   P+V+I
Sbjct: 4   KHNIIVCQGTGCISGGSEAILSALQDEVKNNNLEDT----VLVKQTGCHGFCQRGPLVVI 59

Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181
             +   Y  +TPE + EI  +   G     R
Sbjct: 60  EPEELFYSHVTPEDIPEIAQSLKDGGKPVER 90


>gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
 gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
          Length = 538

 Score = 67.5 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC +T C+    ++++     ++ Q+ L       +  ++V C G C   P+V I
Sbjct: 21  RYRIMVCSSTGCLSSRSDEILAALEAEVKQRGLE----NEVLVKKVGCLGLCAAGPIVSI 76

Query: 153 --GKDTYEDLTPERLEEIIDAF 172
                 Y+++TPE +  I+D  
Sbjct: 77  QPDGILYKEMTPEDVPAILDRL 98


>gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 467

 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 18/107 (16%)

Query: 68  LDMAYIRVLEIATFYTQFQL---SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP 124
           + ++   V E A+FY  F+L         A ++ C    C +R  +         +   P
Sbjct: 1   MRLSPAEVQETASFYAHFRLLDDHEAAPAAVLRRCTGPACSMRPLD---------LGALP 51

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
                DG +  E+V C G C +AP+ + GK         ++   +  
Sbjct: 52  -----DG-VMVEDVPCTGLCDHAPVALAGKVPVRRADAAKVARALAE 92


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C+  G  KL E  + ++ ++ L    D  +   +  C G C   P++++
Sbjct: 5   RSHVLVCGGTGCVSSGSAKLQEALQKELGKQGL----DKEILLVQTGCHGMCEAGPIMVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + PE   EI++ 
Sbjct: 61  YPEGTFYTHVKPEDAAEIVEE 81


>gi|237668838|ref|ZP_04528822.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237657186|gb|EEP54742.1| Fe-hydrogenase gamma subunit [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 60

 Score = 66.7 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 132 TLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
             + E V C GAC  AP+  +  + Y ++T  +++ ++D    
Sbjct: 1   MFTVETVSCLGACGLAPVCTVNDEVYPNMTKAKVKSLVDDIRK 43


>gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 176

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + VCG T C+  GC+++++  + ++    L    D      E  C G C   P+V+I
Sbjct: 22  KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77

Query: 153 --GKDTYEDLTPERLEEIID-AFSTGQ 176
              K  Y ++  E ++E+++     G+
Sbjct: 78  YPEKTFYCNVQVEDIKELVERQLINGE 104


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + VCG T C+  GC+++++  + ++    L    D      E  C G C   P+V+I
Sbjct: 22  KTRILVCGGTGCISCGCKQILDKLKEELLINFL----DDKFRLIETGCHGLCEKGPIVII 77

Query: 153 --GKDTYEDLTPERLEEIID-AFSTGQ 176
              K  Y ++  E ++E+++     G+
Sbjct: 78  YPEKTFYCNVQVEDIKELVERQLINGE 104


>gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
          Length = 1040

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  ++VC    C+  G  +++E   + +         D   S ++  C G C   P+VM
Sbjct: 24  KRHLIRVCAGGGCLASGSIEVMEALESNLK----ELAVDA--SVKKTGCLGPCARGPVVM 77

Query: 152 IGKD--TYEDLTPERLEEIIDA-FSTGQGDTIRP 182
           I  +   YE + PE   EI +  +  G+  T+ P
Sbjct: 78  IEPEGLFYEGVHPEDCREICETLYKAGKNGTVDP 111


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + ++ +C  T C   G + +    + ++  +      D  +      C G C   P+++I
Sbjct: 25  KPYITICSGTACHATGSDAVAAAIQAEL--EKQGLTDD--VGVRRTGCHGFCERGPIIVI 80

Query: 153 --GKDTYEDLTPERLEEIIDA 171
             G+  Y ++TPE + EII  
Sbjct: 81  YPGELCYLNVTPEDVPEIIAK 101


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + ++ +C  T C   G + +    + ++  +      D  +      C G C   P+++I
Sbjct: 25  KPYITICSGTACHATGSDAVAAAIQAEL--EKQGLTDD--VGVRRTGCHGFCERGPIIVI 80

Query: 153 --GKDTYEDLTPERLEEIIDA 171
             G+ +Y ++TPE + EII  
Sbjct: 81  YPGELSYLNVTPEDVPEIIAK 101


>gi|239618157|ref|YP_002941479.1| hypothetical protein Kole_1790 [Kosmotoga olearia TBF 19.5.1]
 gi|239506988|gb|ACR80475.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
          Length = 83

 Score = 64.4 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           ++VC  + C ++G   + +  +  + +K L    DG +S +   C G C    +V +   
Sbjct: 3   IKVCMGSACHIKGSPNIAKKLQVLLKEKGL----DGKVSLKGSFCMGPCNKGVVVSVDGK 58

Query: 156 TYEDLTPERLEEII--DAFSTGQ 176
            +  ++ + +EE    +    G+
Sbjct: 59  VFYHISEDNVEEFFFKEILKRGE 81


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score = 64.4 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G E LI + + ++ +  L       ++  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSETLISLLQEELKKNGLE----NEVAIVKTGCHGLCAQGPVMVI 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179
                 Y  + PE + EI+ +    G+  T
Sbjct: 59  YPDATFYSMVKPEDIPEIVSEHLLKGRVVT 88


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score = 64.0 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VC  T C   G E +++    +   +    +  G +      C G C   P ++I
Sbjct: 5   RAHVLVCRGTGCTASGSESVMDAFEKE--IEKHGLS--GEVKVLLTGCLGLCELGPNIII 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E + EI++ 
Sbjct: 61  YPEGTYYCRVKAEDVPEIVEE 81


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score = 64.0 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140
                    + VC  T C  +G  K+      ++ ++            D  ++     C
Sbjct: 19  REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78

Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171
            G C + P+V  M  +  Y ++ PE + EI+D 
Sbjct: 79  CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR 111


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score = 64.0 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140
                    + VC  T C  +G  K+      ++ ++            D  ++     C
Sbjct: 19  REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78

Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171
            G C + P+V  M  +  Y ++ PE + EI+D 
Sbjct: 79  CGRCSSGPLVKIMPYRFFYSNVAPEDVPEIVDR 111


>gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + HV VCG T C+  GC+  ++  +  I    L       +      C G C   P++ +
Sbjct: 30  KYHVLVCGGTGCISIGCQNTLQAMQKAIEDHGLQET----VKLVVTGCMGTCEMGPVITV 85

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176
                 Y  + PE +EEI+ +    G+
Sbjct: 86  FPEGYYYCRVKPEDVEEIVTSHLKEGK 112


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140
                    + VC  T C  +G  K+      ++ ++            D  ++     C
Sbjct: 19  REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78

Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171
            G C + P+V  M  +  Y ++ PE + EI+D 
Sbjct: 79  CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR 111


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140
                    + VC  T C  +G  K+      ++ ++            D  ++     C
Sbjct: 19  REKKLNGVSIYVCVGTGCTAKGALKVYSAFEEELKKRNLLGQVTLEKIDDDKVTLNRTGC 78

Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171
            G C + P+V  M  +  Y ++ PE + EI+D 
Sbjct: 79  CGRCSSGPLVKIMPYRFFYSNVVPEDVPEIVDR 111


>gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
 gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
          Length = 659

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V+VC  T C L G   L    ++K+ Q+         +      C   C  +P VM
Sbjct: 579 KKRVVKVCVGTCCYLSGAYDLFSTLKDKLSQEDFKD----KVELAATFCFENCTQSPCVM 634

Query: 152 IGKDTYEDLTPERL-EEIIDA 171
           +      + T E++  EI+  
Sbjct: 635 VDDVLIGEATVEKVINEILKQ 655


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VC  T C+  G E ++E    +I +K L       +   +  C G C   P V+I
Sbjct: 5   RAHVLVCKGTGCVASGSEPIMEAFEKEIEKKGL----SKEVKVVQTGCLGLCELGPNVLI 60

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGK 210
                 Y  +  E + EI++     +G  +      +R +        SL+D +  KR K
Sbjct: 61  YPEGSYYCTVKAEDVPEIVEEH-LLKGRIVERLLYKERDTKER---YRSLMDIDFYKRQK 116

Query: 211 K 211
           +
Sbjct: 117 R 117


>gi|218671477|ref|ZP_03521147.1| formate dehydrogenase subunit gamma [Rhizobium etli GR56]
          Length = 164

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            C   G + L E  +  +         DG+++ E V C   C  A
Sbjct: 1   ACQSMGGDALAERIKALLGIDFHQTTLDGSVTLEAVYCLKLCAAA 45


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G + +     N+I  K      D  ++     C G C   P+V+I
Sbjct: 4   RSHVMVCGGTGCTSSGSDNVAAAFVNEIK-KAG---LDKEVAVIRTGCFGLCELGPVVVI 59

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQGDT 179
                 Y  + PE + EI++     G+  T
Sbjct: 60  YPEGVFYSKMKPEYVPEIVEEHLLKGRPVT 89


>gi|239826984|ref|YP_002949608.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
 gi|239807277|gb|ACS24342.1| cobalamin biosynthesis protein [Geobacillus sp. WCH70]
          Length = 132

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + HV +C    CM +G E++    R +     L    DG +      C G C +A +V
Sbjct: 8   GMKHHVLICNGGSCMRKGGEEVTLAIREE--IAMLEL--DGIVHTTRTRCNGRCQDACVV 63

Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           ++      Y  +TPE+  E++      G+
Sbjct: 64  IVYPEGVWYNGVTPEKARELVRRHLRDGE 92


>gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 572

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G   H  VCG T C+  GC+ +     ++I ++ L       +   E  C G C   PM+
Sbjct: 28  GYEYHALVCGGTGCVSSGCKSVKSALVDEIRKQGLE----AKVRVIETGCLGPCNLGPMI 83

Query: 151 MI--GKDTYEDLTPERLEEII-DAFSTGQGDT--IRPGPQIDRI 189
            +      YE +T   +E ++ +    G+     +   P   R+
Sbjct: 84  TVYPDGIFYEKVTAGDVESVVTEHLREGRPVNRLLHRCPDTGRV 127


>gi|226312181|ref|YP_002772075.1| 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
 gi|226095129|dbj|BAH43571.1| putative 2Fe-2S ferredoxin [Brevibacillus brevis NBRC 100599]
          Length = 125

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+ HV +C    CM +G E++    R  I         D  +      C G C +A +++
Sbjct: 9   TKHHVLICNGGSCMRKGGEEVTVAIREAIT----ESGLDDYVHTTRTRCNGRCEDACVMI 64

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +      YE++TPE  +++++ 
Sbjct: 65  VYPEGIWYENVTPEDAQKLVEE 86


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score = 62.1 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 17/106 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G E + +V   KI +  L       ++  E  C GAC   P+++I  
Sbjct: 7   TILICAGGACISAGEESVKDVLERKIKEYNLQDT----INIVETGCMGACSLGPIMVIHP 62

Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQID 187
               Y+ LTPE  E+I++               G    I P PQ +
Sbjct: 63  EGVYYQKLTPEAAEKIVEEHLLKGRVVEEYLYKGDKGKIVPQPQKE 108


>gi|295704727|ref|YP_003597802.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
 gi|294802386|gb|ADF39452.1| cobalamin biosynthesis protein [Bacillus megaterium DSM 319]
          Length = 126

 Score = 62.1 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RN    K    + D T+      C G C +AP+ 
Sbjct: 8   GTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGRCKDAPVA 63

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T      I++    G
Sbjct: 64  IVYPSGDWYKQVTETVAHRIVEEHLAG 90


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 62.1 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VCG T C+    E +          +         ++ +E  C G C   P+ +
Sbjct: 2   KKYTICVCGGTGCLSSESEDVKNEFITL--IEKEGLTE--QVTVKETGCMGTCDLGPVAL 57

Query: 152 IGKD--TYEDLTPERLEEIIDA 171
           I  D   Y  L PE + +II++
Sbjct: 58  IDPDNVFYCKLKPEDVSDIINS 79


>gi|186685846|ref|YP_001869042.1| hypothetical protein Npun_F5801 [Nostoc punctiforme PCC 73102]
 gi|186468298|gb|ACC84099.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 212

 Score = 62.1 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
              ++ P   +A + VC  + CM RG + + +     +  + L       ++ +   C  
Sbjct: 102 HNVKVKPAKAKATILVCQKSDCMKRGGKAVCQALEAALSDRGLED----QVTIKGTGCMK 157

Query: 143 ACVNAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            C   P +VM  K  +  +   ++  ++D     +    +P
Sbjct: 158 NCKAGPNLVMPDKTRHSRIQAAQVPRLMDKHFGDKSLEAQP 198


>gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 552

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVC 116
              I+ +A   +M    +    +FY   + S    +A   VC  + CM  G ++ L +  
Sbjct: 32  ADGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKL 89

Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           + K+   K              + C G C          + Y      ++++II  
Sbjct: 90  QEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 134


>gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 552

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVC 116
              I+ +A   +M    +    +FY   + S    +A   VC  + CM  G ++ L +  
Sbjct: 32  ADGIKEIAKEYNMGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKL 89

Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           + K+   K              + C G C          + Y      ++++II  
Sbjct: 90  QEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 134


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score = 62.1 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 17/106 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G E + +V   KI +  L       ++  E  C GAC   P+++I  
Sbjct: 7   TILICAGGACISAGEESVKDVLERKIKEYNLQET----VNIVETGCMGACSLGPIMVIHP 62

Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQID 187
               Y+ LTPE  E+I++               G    I P PQ +
Sbjct: 63  EGVYYQKLTPEAAEKIVEEHLLKGRVVEEYLYQGDKGKIVPQPQKE 108


>gi|153955637|ref|YP_001396402.1| hypothetical protein CKL_3023 [Clostridium kluyveri DSM 555]
 gi|146348495|gb|EDK35031.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 74

 Score = 61.7 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 27 NEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
           EVI +YP  R Q  ++P+L   Q +  ++ R ++E ++  +D+ + R+  + 
Sbjct: 16 QEVIEKYP--RKQRFILPILHDIQRKYKYIPRQSLENLSKYMDIPFNRLYSMV 66


>gi|309389843|gb|ADO77723.1| NADH-quinone oxidoreductase chain E [Halanaerobium praevalens DSM
           2228]
          Length = 79

 Score = 61.7 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNK-IHQKPLHRNSDGTLSWEEVECQ-GACVNAPMVMI 152
            +++C  TPC L G   L+E      +  K         +  +   C    C  AP++  
Sbjct: 5   ILKICIGTPCHLMGAADLLEAVEELDLDLKN-------QIEIKTTHCIDNCCDKAPVIKF 57

Query: 153 GKDTYEDLTPERLEEII 169
               Y+DL PE+L +II
Sbjct: 58  NGKIYQDLNPEKLYKII 74


>gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 551

 Score = 61.3 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 58  RAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRG-CEKLIEVC 116
              I+ +A   ++    +    +FY   + +    +A   VC  + CM  G  EKL +  
Sbjct: 31  PQDIKEIAKKHNLGVSTLHGAESFYEFLRPAHREKKA--FVCNGSACMCAGTQEKLKDTL 88

Query: 117 RNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           + K+   K              + C G C          + Y     E++++I+  
Sbjct: 89  KEKLGDDKVGE-----------MFCLGHCYENNAFHYDGENYAGKDIEKIDQILKG 133


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score = 61.3 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G  K++E   N+I ++ L       ++  E  C G C   P++++
Sbjct: 3   RSHVLVCGGTGCTSSGSPKIMEALHNEIKKQGLEE----EVAVVETGCHGLCALGPIMIV 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
                 Y  + P  + EI+ +    G+  T      + + + +P GG+ +L D +  K+
Sbjct: 59  YPDATFYSMVQPNDIPEIVSEHLLKGRVVT----RLLYQETVSPTGGIKALRDTDFYKK 113


>gi|326204435|ref|ZP_08194293.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985467|gb|EGD46305.1| Sucraseferredoxin family protein [Clostridium papyrosolvens DSM
           2782]
          Length = 113

 Score = 61.3 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 85  FQLSPVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           F +SP   + HV VC       T    C  +G   LI+    +           G +   
Sbjct: 11  FMVSP---KYHVFVCASCRINGTQKGFCHSKGSVALIQKFMEE--IDDNDLT--GEVMVT 63

Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              C G C   P+V+I      Y ++T + +E I++    G G+ ++
Sbjct: 64  NTGCFGICDKGPVVVIYPEGTWYGNVTEDDVETIVEQHLIG-GEKVK 109


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score = 61.3 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G +++ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSGSDEVAERFIEEIK-KAG---LDKEILVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + PE + EI++ 
Sbjct: 60  YPEGVFYSRVKPEYVPEIVEE 80


>gi|150020388|ref|YP_001305742.1| hydrogenase large subunit [Thermosipho melanesiensis BI429]
 gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
           BI429]
          Length = 653

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V+VC  T C  +G  +L+       +++ L       +  +   C   C NAP VM
Sbjct: 574 KKTVVKVCLGTSCYAKGSYELLSQLIKLTNEEELS-----NVEIKGTFCLEKCGNAPNVM 628

Query: 152 IGKDTYEDLTPERLEEIIDA 171
           +     ++ + E+++E++  
Sbjct: 629 VNDKIIDEASIEKIKEVLKE 648


>gi|170289103|ref|YP_001739341.1| hypothetical protein TRQ2_1314 [Thermotoga sp. RQ2]
 gi|166979950|sp|Q9X1D7|Y1420_THEMA RecName: Full=Protein TM_1420
 gi|170176606|gb|ACB09658.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 75

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V+VC  + C L+G  +++   +  + +K                C G C     V I  
Sbjct: 2   IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 53

Query: 155 DTYEDLTPERLEEIIDA 171
             +  +TPE  EEI+  
Sbjct: 54  RLFSRVTPENAEEILKK 70


>gi|15644171|ref|NP_229220.1| hypothetical protein TM1420 [Thermotoga maritima MSB8]
 gi|4981984|gb|AAD36490.1|AE001794_6 hypothetical protein TM_1420 [Thermotoga maritima MSB8]
          Length = 77

 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V+VC  + C L+G  +++   +  + +K                C G C     V I  
Sbjct: 4   IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 55

Query: 155 DTYEDLTPERLEEIIDA 171
             +  +TPE  EEI+  
Sbjct: 56  RLFSRVTPENAEEILKK 72


>gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 619

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANIL 68
           S  +    +  +++YP  + QSAV+  L   Q++ G+VS  + +V+A  L
Sbjct: 1  MSAATKSRFDREVAKYPADQKQSAVMACLAIVQQELGFVSAESEKVIAEHL 51


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC  T C     E++I   R +I +  L       +   +  C G C   P+V++  
Sbjct: 34  HVMVCAGTGCTSSNSEEIISRLRVQIEKHGLGET----VKVVQTGCLGLCAKGPIVIVHP 89

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
               Y  +TPE + EI+++   G     R
Sbjct: 90  DDCMYTMVTPEDVSEIVESHLVGGTPVTR 118


>gi|325674817|ref|ZP_08154504.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707]
 gi|325554403|gb|EGD24078.1| Fe-hydrogenase [Rhodococcus equi ATCC 33707]
          Length = 250

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G   HV VC    C  RG  +  E   + +  + L    D  +   +  C   C  AP+
Sbjct: 147 PGFTRHVLVCRGPRCSARGGPETAEALDHALEARGLG---DDDVLVTQTGCMFPCSQAPV 203

Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQIDRISS 191
           V +      Y  LT +R++ ++D     G+  T   G +  R S+
Sbjct: 204 VAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHGAR--RRSA 246


>gi|294499376|ref|YP_003563076.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
 gi|294349313|gb|ADE69642.1| cobalamin biosynthesis protein [Bacillus megaterium QM B1551]
          Length = 126

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RN    K    + D T+      C G C +AP+ 
Sbjct: 8   GTKHHVLICNGSSCMRKGGEEATQAIRN----KVTELDLDETVHTTRTRCNGRCKDAPVA 63

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T      I+     G
Sbjct: 64  IVYPSGDWYKQVTETVAHRIVKEHLAG 90


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRN----SDGTLSWEEVEC 140
                +   V VC  T C  +G  ++ +  + ++ ++            D  ++     C
Sbjct: 19  REKKLSGTSVYVCVGTGCTAKGALRVYDAFKRELEKRNLLGKVTLEKIDDDKVTLNRTGC 78

Query: 141 QGACVNAPMV--MIGKDTYEDLTPERLEEIIDA 171
            G C + P+V  M  +  Y ++T E + EI++ 
Sbjct: 79  CGRCSSGPLVKIMPYRFFYSNVTSEDVPEIVEK 111


>gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD 155
           VC  T C   G E+++   + +I +  L       +  ++  C G C   P+V+I     
Sbjct: 9   VCLGTGCQSGGAEEVLSSLKEEIERLSLEET----VQVKQTGCHGFCQRGPLVVIEPEGI 64

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIR 181
            Y  +TP+ + EI  +   G+    R
Sbjct: 65  FYSKVTPDDVSEIAKSLLPGETPVER 90


>gi|308068791|ref|YP_003870396.1| ferredoxin, 2Fe-2S [Paenibacillus polymyxa E681]
 gi|305858070|gb|ADM69858.1| Ferredoxin, 2Fe-2S (AaFd4) [Paenibacillus polymyxa E681]
          Length = 108

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH----RNSDGTLSWEEVEC 140
           F+L P+  + HV VC    CM    E++ +  R++I ++                    C
Sbjct: 4   FELEPM--KHHVLVCNGGTCMRHEGEEVTQAIRDEIRKQNAEAYIHTT--------RTRC 53

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            G C +A +V++    D Y  +TP+   +++    TG+     
Sbjct: 54  NGRCHDAAVVIVYPQGDWYGQMTPDSGTQLVQKLVTGEKLEPH 96


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G ++++   R+++  + L    D  +S  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSQQIMVKLRDELKGQGL----DQEVSVVQTGCHGLCALGPIMII 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
                 Y  +  E + EI+ +    G+     P  ++    +    G+ +L D +  K+
Sbjct: 59  YPDATFYAMVKEEDISEIVSEHLLKGR-----PVERLLYDETVTPAGIKALSDTDFYKK 112


>gi|75910726|ref|YP_325022.1| hypothetical protein Ava_4529 [Anabaena variabilis ATCC 29413]
 gi|75704451|gb|ABA24127.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 219

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   +A + VC  + CM RG + L +     +  + L       ++ +   C   C   
Sbjct: 108 KPDKAKATILVCQKSDCMKRGGKALCQALEATLSDRGLED----QVTIKGTGCMKNCKAG 163

Query: 148 P-MVMIGKDTYEDLTPERLEEIIDAFST 174
           P +VM  K  Y  +  +++ ++++    
Sbjct: 164 PNLVMPDKTRYTRIQADQVPQLMNKHFA 191


>gi|312881026|ref|ZP_07740826.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
 gi|310784317|gb|EFQ24715.1| hypothetical protein Apau_2308 [Aminomonas paucivorans DSM 12260]
          Length = 94

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G R  + +C  + C  RG +K +EV R  +    +       +S     C+GAC   P 
Sbjct: 14  KGERVVLTLCMGSSCFARGNQKNLEVIRQFLKDHRMED----RVSLVGSRCEGACTQGPN 69

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           + IG   +  +  E L  +++ 
Sbjct: 70  LRIGDRLFPRINQEDLPALLER 91


>gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 535

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            V  C +T C      ++ +     + +  L       +    V C G C   P+V +  
Sbjct: 21  RVHCCTSTGCQAANSLQIEKNLATAVKEAHLEDT----VEVVGVGCMGFCGRGPLVEVDP 76

Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDT 179
               YE++TPE    II A + G+ + 
Sbjct: 77  QDLLYEEVTPESAASIIAALNGGKTEV 103


>gi|281412807|ref|YP_003346886.1| hypothetical protein Tnap_1390 [Thermotoga naphthophila RKU-10]
 gi|281373910|gb|ADA67472.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 75

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V+VC  + C L+G  +++   +  + +K                C G C     V I  
Sbjct: 2   IVRVCMGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDG 53

Query: 155 DTYEDLTPERLEEIIDA 171
             +  +TPE  EEI+  
Sbjct: 54  QLFSRVTPENAEEILKR 70


>gi|300868038|ref|ZP_07112676.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333958|emb|CBN57854.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 236

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +A + VC  + C  RG   + +     +  + L       ++ +   C   C   P  +
Sbjct: 153 AKAKILVCQKSDCQKRGGRAICQALETALSDRGLED----HVTIQGTGCLKQCKAGPNII 208

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           +M  K  Y  + P ++  II+      G
Sbjct: 209 LMPDKTRYSRIEPAKIPGIIEKHFAVNG 236


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 17/103 (16%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C   G   +++  ++++ ++ L    D  +   +  C G C   P+V++
Sbjct: 3   RAHVLVCGGTGCTSSGSHGVMDGLKSELKKQNL----DDEVLVVQTGCHGMCEMGPIVVV 58

Query: 153 --GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRP 182
                 Y  ++ + + E+++              TG+GD   P
Sbjct: 59  YPEGTFYCRVSKDDVPELVEEHLLKGRTVDRLLYTGEGDVHVP 101


>gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Geobacter metallireducens GS-15]
          Length = 569

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  TPC+  G + +++  R  +         D  +      C G C   P+V +
Sbjct: 21  RCRIMVCAGTPCLSAGAQTVLDSLRKALA----ESRLDAEIEAVASGCMGPCSRGPLVKV 76

Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                 +  +E +TPE   +I+ + + G+   
Sbjct: 77  RQQGKKEIIFERVTPELARQILLSLAKGRRPP 108


>gi|312138266|ref|YP_004005602.1| ferredoxin-like protein [Rhodococcus equi 103S]
 gi|311887605|emb|CBH46917.1| putative ferredoxin-like protein [Rhodococcus equi 103S]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G   HV VC    C  RG  +  E   + +  + L    D  +   +  C   C  AP+
Sbjct: 147 PGFTRHVLVCRGPRCSARGGPETAEALDHALEARGLG---DDDVLVTQTGCMFPCSQAPV 203

Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPG 183
           V +      Y  LT +R++ ++D     G+  T   G
Sbjct: 204 VAVYPDDTWYCGLTADRIDRLVDEHLVAGRPVTEWHG 240


>gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
 gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
          Length = 530

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 24/126 (19%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           +A +LD+A              +      R H   C +T C      ++ +  +  + + 
Sbjct: 3   LAELLDIAQQE-----------RDKQKPIRVHC--CTSTGCEAANSLEVKKNLQKAVKEG 49

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG-----Q 176
            L       +    V C G C   P+V I      YE++TP +   II++   G     Q
Sbjct: 50  KLED----KVEVIGVGCMGFCGKGPLVQIDPEDTLYEEVTPSQAASIINSLDGGTSDAAQ 105

Query: 177 GDTIRP 182
           GD+  P
Sbjct: 106 GDSHHP 111


>gi|17228092|ref|NP_484640.1| hypothetical protein all0596 [Nostoc sp. PCC 7120]
 gi|17129942|dbj|BAB72554.1| all0596 [Nostoc sp. PCC 7120]
          Length = 219

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   +A + VC  + CM RG + L +     +  + L       ++ +   C   C   
Sbjct: 108 KPEKAKATILVCQKSDCMKRGGKALCQALEATLSDRGLED----QVTIKGTGCMKNCKAG 163

Query: 148 P-MVMIGKDTYEDLTPERLEEIIDAFST 174
           P +VM  K  Y  +  +++ ++++    
Sbjct: 164 PNLVMPDKTRYTRIQADQVPKLMNKHFA 191


>gi|239905421|ref|YP_002952160.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
 gi|239795285|dbj|BAH74274.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
          Length = 685

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P  T+  V+VC  T C LRG + ++      I +  L    D   S+    C   C   P
Sbjct: 585 PAQTKVRVRVCLGTSCHLRGAQDILTGMLKHIVENGLENAVDVRASF----CFEQCAKGP 640

Query: 149 MVMIGKDTYEDLTPERLEEIIDA-FSTGQGDTIRP 182
            V +  +     T E +   +DA          +P
Sbjct: 641 TVEMDGEVMTHCTLESVLAALDAHLRNPLPQPTKP 675


>gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
 gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
          Length = 546

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%)

Query: 64  VANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQK 123
           +A +L++A              +      R H   C +T C       + +  +     K
Sbjct: 3   LAELLEIAATE-----------RAKQKPIRVHC--CTSTGCEAANSLTVKKNLQKA--VK 47

Query: 124 PLHRNSDGTLSWEEVECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
             H      +    V C G C   P+V I      YE++TPE+   II+  + G
Sbjct: 48  EGHLEE--QVEIIGVGCMGFCGKGPLVQIDPENTLYEEVTPEQAASIIEGINGG 99


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
            V+VC  T C+  G  ++ E    +  ++ L    D     E   C G C   P  +   
Sbjct: 25  RVRVCAGTGCLAGGSARVKEAFEVEAARRGLALGVD--FRAETTGCHGFCEEGPLVVAEP 82

Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175
           G   Y  +TP  + EI+DA ++G
Sbjct: 83  GGILYRRVTPSDVPEILDALASG 105


>gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
 gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
          Length = 535

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            V  C +T C      ++ +     + +  L       +    V C G C   P+V +  
Sbjct: 21  RVHCCTSTGCQAANSLQIKKNLATAVQEADLEDT----VEVVGVGCMGFCGRGPLVEVDP 76

Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDT 179
               YE++TPE    II A + G+ + 
Sbjct: 77  QDLLYEEVTPESAASIIAALNGGKTEV 103


>gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
 gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
 gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima MSB8]
          Length = 645

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  V+VC  T C  +G  ++++   + + +  +     G +      C   C  +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDME----GKIEVLGTFCVENCGASP 620

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
            V++        T E++   ++  S 
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V VCG T C   G  ++IE  + +   K      D  +S     C G C   P+++
Sbjct: 50  KKKAVLVCGGTGCTSSGSRRVIERLKEE--IKKQGLEED--VSVVMTGCFGLCALGPIMI 105

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDT 179
           +      Y  +  E + EI++     G+ DT
Sbjct: 106 VYPEGAFYSMVKEEEIPEIVEQHLLHGKVDT 136


>gi|170289108|ref|YP_001739346.1| hydrogenase large subunit [Thermotoga sp. RQ2]
 gi|170176611|gb|ACB09663.1| hydrogenase large subunit domain protein [Thermotoga sp. RQ2]
          Length = 645

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  V+VC  T C  +G  ++++   + + +        G +      C   C  +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDRE----GKIEVLGTFCVENCGASP 620

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
            V++        T E++   ++  S 
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643


>gi|148270497|ref|YP_001244957.1| hydrogenase large subunit [Thermotoga petrophila RKU-1]
 gi|281412803|ref|YP_003346882.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
           RKU-10]
 gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila
           RKU-1]
 gi|281373906|gb|ADA67468.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 645

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P G +  V+VC  T C  +G  ++++   + + +        G +      C   C  +P
Sbjct: 565 PNGEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDRE----GKIEVLGTFCVENCGASP 620

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
            V++        T E++   ++  S 
Sbjct: 621 NVIVDDKIIGGATFEKV---LEELSK 643


>gi|295400339|ref|ZP_06810318.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111135|ref|YP_003989451.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
           Y4.1MC1]
 gi|294977614|gb|EFG53213.1| cobalamin biosynthesis protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216236|gb|ADP74840.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 122

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + HV +C    CM +G E++    R +     L    DG +      C G C +A +V
Sbjct: 8   GMKHHVLICNGGSCMRKGGEEVTLAIREE--IASLEL--DGIVHTTRTRCNGRCQDACVV 63

Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           ++      Y  +TPE+  E++      G+
Sbjct: 64  IVYPEGVWYNGMTPEKGREVVRRHLRDGE 92


>gi|220905651|ref|YP_002480962.1| hypothetical protein Cyan7425_0205 [Cyanothece sp. PCC 7425]
 gi|219862262|gb|ACL42601.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 204

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            +A + VC  + C  RG   + +     +       N    ++ +   C   C   P+V 
Sbjct: 110 AKAKILVCQGSDCRARGARAVQQKLEQTLD-DRGLTN---QVTVKSTGCMHCCKKGPVVV 165

Query: 151 -MIGKDTYEDLTPERLEEIIDA 171
            M  K+ Y+ +TP ++  ++  
Sbjct: 166 FMPDKNRYQQVTPTQIPTLVSE 187


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 90  VGTRA--HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            G +    V +CG T C+  G   +      ++            +   +  C G C   
Sbjct: 19  KGRKYSKQVLICGGTGCISSGSNDIAAKMEERVKALGKED----EIRVIKTGCFGFCEKG 74

Query: 148 PM--VMIGKDTYEDLTPERLEEIIDAFSTG 175
           P+  ++     Y ++TPE +++++D    G
Sbjct: 75  PIVKMLPDNTFYTEVTPEDVDKLVDKHLIG 104


>gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 688

 Score = 59.4 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  VQVC  T C LRG + ++      I  +    N+   +      C   C + P V 
Sbjct: 590 PRLRVQVCLGTSCHLRGAQDILTGLLGHIA-EQGLTNA---VDVRASFCHEKCADGPTVQ 645

Query: 152 IGKDTYEDLTPERLEEIIDA 171
           I  D     T E +   +DA
Sbjct: 646 INGDVMTHCTLESVIAALDA 665


>gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
 gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
          Length = 549

 Score = 59.4 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
           + +  +  +++   +    V   ATFY          +  V VC  + C+L G +   + 
Sbjct: 32  LDQEVMHQISDEYLVGNANVYGAATFYDFLNPEQSNKK--VFVCAGSACLLAGTQ---QA 86

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
            +  + Q           S  EV C G C
Sbjct: 87  LQQTLEQHFDPT------SIGEVYCLGRC 109


>gi|261885721|ref|ZP_06009760.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 56

 Score = 59.4 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 125 LHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDT 179
              +SDG  S  E EC G C  AP ++   +  + L    +  +I+        +
Sbjct: 2   GETSSDGLFSLGETECLGYCEKAPCMLCNLEQIDSLDENSITNLIEKIRKENASS 56


>gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
 gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
          Length = 535

 Score = 59.4 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAP 148
           TR  +  C    C   G  ++       +        + G    +    V C G C + P
Sbjct: 18  TRQRILCCAAAGCQASGSLEIKRRLETVL-------TATGKLAEVDVIPVGCMGLCGHGP 70

Query: 149 MVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           ++ I    + +E +TP   E+++ A   G        P+ DR +
Sbjct: 71  LLRIEPSGEMFEHVTPADAEDLVAALDGG----PCTVPRCDRNA 110


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C+  G +K+ E   +++ ++ L    D  +   E  C G C   P++++
Sbjct: 5   RAHVLVCGGTGCVSSGSKKIQEALSDELAKQNL----DKEIKVVETGCHGFCEMGPILIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +T E ++EI+  
Sbjct: 61  YPEGTFYCRVTVEDVQEIVAE 81


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C   G +K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSAGSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  +TPE  +EI +     G+
Sbjct: 99  NVFYVKVTPEDAKEIAEKHLLKGE 122


>gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 615

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +  + +CG T C   G  ++ E    +++ + L    D      E  C G C   P  +
Sbjct: 24  RKTCLMLCGGTGCRSTGSLEIKEALLEELNTRGLQDTVD----VVETGCNGFCARGPILV 79

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           V      Y+ LT + + E++  
Sbjct: 80  VQPHDIFYQMLTLQDIPELVQE 101


>gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
 gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
          Length = 562

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150
           + H+ VCG T C     ++++ + +    +  +       +   +  C G C   P+V  
Sbjct: 34  KYHILVCGGTACESNKSDEIVRLLKEYAEKNGIE----NDVLVVKTGCFGFCSQGPVVKI 89

Query: 151 MIGKDTYEDLTPERLEEIIDA 171
           M G+  Y  + P   ++II+ 
Sbjct: 90  MPGRVFYTHVEPAHAKDIIEK 110


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 59.4 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +++ +    +I  K L    D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEIQVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E + EI++ 
Sbjct: 60  YPEGVFYSRVKEEYVPEIVEE 80


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score = 59.0 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAPMVM 151
             + VC  T C++ G   +    +  +       + +  +    +   CQG C   P+V 
Sbjct: 37  VQIVVCHGTGCLVSGSPAVTRAFKKVLG----ETDIEAKVMPGVKTTGCQGFCSRGPLVT 92

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           I      YE ++P+ +E+I++        T++ G  ++R
Sbjct: 93  IMPQGIFYERVSPKDVEDIVEQ-------TVKNGKPVER 124


>gi|239618160|ref|YP_002941482.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1]
 gi|239506991|gb|ACR80478.1| NADH-quinone oxidoreductase chain E [Kosmotoga olearia TBF 19.5.1]
          Length = 77

 Score = 59.0 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA---PMVM 151
            V+VC  T C L G  +++ V +      P        +    V C G C      P++ 
Sbjct: 2   KVKVCVGTMCHLMGASEILTVIQEIADNDPN-------IELVAVTCPGYCHVGKKPPIIE 54

Query: 152 IGKDTYEDLTPERLEEIIDA 171
           I    YE++T E +  I+  
Sbjct: 55  INGQVYENVTVESVYHILKE 74


>gi|138895355|ref|YP_001125808.1| putative ferredoxin [Geobacillus thermodenitrificans NG80-2]
 gi|134266868|gb|ABO67063.1| Putative ferredoxin [Geobacillus thermodenitrificans NG80-2]
          Length = 198

 Score = 59.0 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 79  ATFYTQFQLSP-------VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HR 127
            +FY   +           G + HV +C    C+  G + +    R +   +      H 
Sbjct: 55  ISFYHSSKRGDLVATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHT 114

Query: 128 NSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
                       C G C +A ++++      Y  +TPE+ +E +     G+G  +R    
Sbjct: 115 T--------RTRCNGRCQDACVMIVYPDGVWYRQMTPEKAKE-VARVHLGEGVPLR---- 161

Query: 186 IDRISSAPAGGLTSLLDNNSKKRGKKKKDDK 216
               ++    G   L     ++    K+ ++
Sbjct: 162 --EWATYEYEGELVLTPIGEREAASGKRKNE 190


>gi|121535574|ref|ZP_01667381.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1]
 gi|121305814|gb|EAX46749.1| NADH dehydrogenase I chain G [Thermosinus carboxydivorans Nor1]
          Length = 78

 Score = 59.0 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C  T C L G + LI        ++  H      +    V C   C   P V I  
Sbjct: 5   VIEICVGTSCYLLGAQDLIRAVEELPCEQRSH------IELRGVTCLKTCGKGPNVRIDG 58

Query: 155 DTYEDLTPERLEEIIDA 171
                +TPERL  II  
Sbjct: 59  VVLAGMTPERLLTIIQD 75


>gi|222100046|ref|YP_002534614.1| hypothetical protein CTN_1072 [Thermotoga neapolitana DSM 4359]
 gi|221572436|gb|ACM23248.1| Hypothetical Protein CTN_1072 [Thermotoga neapolitana DSM 4359]
          Length = 75

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC  + C L+G  +++E  R            D         C G C     V I  
Sbjct: 2   TIRVCMGSSCYLKGSYRVVEKLR--------ELQKDYNFKLYGSLCFGRCSQGICVEIDG 53

Query: 155 DTYEDLTPERLEEIIDA 171
             +  ++PE +EE++  
Sbjct: 54  RLFTGVSPENVEELVKK 70


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score = 59.0 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +++ +    +I  K L    D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSNSDRVAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E + EI++ 
Sbjct: 60  YPEGVFYSRVKEEYVPEIVEE 80


>gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
 gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
          Length = 577

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G  K+IE    +             +   +  C G C   P+V++
Sbjct: 3   RSHVLVCGGTGCTSSGSVKIIEEFERE--IAATGLTD--EVKVVKTGCFGLCALGPVVIV 58

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E ++EI+D 
Sbjct: 59  YPEGSFYSRVKAEDVKEIVDE 79


>gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
 gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
          Length = 562

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150
           + H+ VCG T C     ++++ + R    +K     +D  +   +  C G C   P+V  
Sbjct: 34  KYHILVCGGTACESNKSDEIVRLLREY-AEKNGI--AD-EVLVVKTGCFGFCSQGPVVKI 89

Query: 151 MIGKDTYEDLTPERLEEIIDA 171
           M G+  Y  + PE  ++II+ 
Sbjct: 90  MPGRVFYTHVGPEHAQDIIEK 110


>gi|119494760|ref|ZP_01624781.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106]
 gi|119452002|gb|EAW33231.1| hypothetical protein L8106_08091 [Lyngbya sp. PCC 8106]
          Length = 189

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148
            G +A + VC  + C  +G   L       + ++ L       ++ ++  C   C   P 
Sbjct: 108 AGKKAQILVCDKSDCRKKGGSHLCSALETAVQEQGLEE----HVTIKKTGCLKRCKAGPN 163

Query: 149 -MVMIGKDTYEDLTPERLEEIIDA 171
            ++M  K  Y  ++ + L ++I  
Sbjct: 164 VVMMPDKTRYSRVSAKELPKLIAK 187


>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
 gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
          Length = 667

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%)

Query: 33  YPPS---RCQSAVIPLLMRAQEQEGWVSRA---AIEVV-ANILDMAYI-RVLEIA-TFYT 83
           YP     R + A   +L   Q  +  +S      +  +              E+  T Y 
Sbjct: 499 YPNDVRTRARRA--KILKETQSVDVLISPTENFHMRELYTKYFGAPLSHEAHEVLHTEYK 556

Query: 84  Q-----------FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
                         L  V  +  V VC  T C  +G  +++E   +  +++   +N    
Sbjct: 557 HRKRIEEEEIEILPLPDVEDKVSVSVCLGTSCYSKGSYEILENLISLANKEEWAKN---- 612

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEI-IDAFSTGQGDT 179
           L  +   C   C  AP V++     E  T E+++E+ ++     +GD 
Sbjct: 613 LEIKGTFCVENCGMAPNVVVNDKIVEQATIEKIKEVALNELGRKKGDP 660


>gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
 gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
          Length = 532

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             ++ C    C   G   L +          + R     +    V C G C + P+V + 
Sbjct: 20  TCIRCCTALGCQSAGSLSLKQRLEEA--VAEVDRTD---IEVIGVGCMGMCGHGPLVRVD 74

Query: 154 KD--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
            D   YE +       I+ A   G     R  PQ
Sbjct: 75  PDGVLYEHVHAADAPSIVAALDGGDATAPRGDPQ 108


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +K+ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P+ + EI++ 
Sbjct: 60  YPEGVFYSRVKPDYVPEIVEE 80


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +K+ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P+ + EI++ 
Sbjct: 60  YPEGVFYSRVKPDYVPEIVEE 80


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW----EEVECQGACVNAPMV 150
            V VC  T C+  G   +    + ++          G        +   C G C   P+V
Sbjct: 13  TVLVCCGTGCLANGSMDVFRALQKQLE------TEGGEFQVRTYTKATGCNGWCEKGPLV 66

Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            I     TY ++    +  I+D     G+
Sbjct: 67  KIVPDDITYCNVKASDVPAIVDKTLKKGE 95


>gi|12644506|sp|O87688|CBIW_BACME RecName: Full=Putative 2Fe-2S ferredoxin
 gi|3724037|emb|CAA04306.1| putative ferredoxin [Bacillus megaterium]
          Length = 127

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C  + CM +G E+  +  RN    K    N D  +      C G C +AP+ 
Sbjct: 10  GTKHHVLICNGSSCMRKGGEEATQAIRN----KVAELNLDEAVHTTRT-CNGRCKDAPVA 64

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++    D Y+ +T +    I++    G
Sbjct: 65  IVYPSGDWYKQVTEKVAHRIVEEHLAG 91


>gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
 gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
          Length = 535

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  +  C    C   G  ++       +       + D       V C G C + P+V 
Sbjct: 18  ARFRILCCAAAGCQASGSLEIKRRLELVLSAAGKQADVD----VVPVGCMGLCGHGPLVR 73

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTG 175
           +      +E +TP   EE++ A   G
Sbjct: 74  LEPTGKVFERVTPADAEELVAALDQG 99


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +K+ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P+ + EI++ 
Sbjct: 60  YPEGVFYSRVKPDYVPEIVEE 80


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +K+ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P+ + EI++ 
Sbjct: 60  YPEGVFYSRVKPDYVPEIVEE 80


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score = 58.6 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +K+ E    +I  K      D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSDSDKVAERFTEEIK-KAG---LDKEVLVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P+ + EI++ 
Sbjct: 60  YPEGVFYSRVKPDYVPEIVEE 80


>gi|17228905|ref|NP_485453.1| hypothetical protein alr1410 [Nostoc sp. PCC 7120]
 gi|17130757|dbj|BAB73367.1| alr1410 [Nostoc sp. PCC 7120]
          Length = 188

 Score = 58.6 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P    A + VC  + C+ RG + L+      +            ++ E   CQ  C +AP
Sbjct: 96  PAPPPAKIMVCQKSGCVKRGGDGLLSELEKTL-CDRGLL---DKVTIEHTGCQKRCSSAP 151

Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTG 175
             ++M+GK  Y+ + PE +  +++ + TG
Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTG 180


>gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 596

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+ +CG T C   G   +    +N+I ++ L   +D  ++  E  C G C   P+ ++
Sbjct: 5   RQHLLICGGTGCHAAGSADVRTALQNEIKKQGL---AD-EVAVVETGCNGFCAMGPVAVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
             G   Y  LT + + E++  
Sbjct: 61  YPGGTFYVSLTIDDVPELVQE 81


>gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 548

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
            HV VC    C+  G E++ +  + ++ +  +       +  + V C G C   P+V + 
Sbjct: 22  HHVCVCIAAGCLSSGAEQVRDALKKEVAESGMQ----NEVLVKGVGCMGLCSAGPLVGVT 77

Query: 153 -GKDTYEDLTPERLEEIIDAFSTG-QGDTIRPGP 184
                + ++TP    EII +  TG +   ++  P
Sbjct: 78  TDGQMFAEVTPAAAPEIIRSLDTGSEPGGVKRCP 111


>gi|294646918|ref|ZP_06724539.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292637863|gb|EFF56260.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 159

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|209525188|ref|ZP_03273731.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima
           CS-328]
 gi|209494373|gb|EDZ94685.1| nucleic acid binding OB-fold tRNA/helicase-type [Arthrospira maxima
           CS-328]
          Length = 190

 Score = 58.2 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   +  + VC  + C  RG + +  V    +  + LH      +  E+  C   C   
Sbjct: 104 QPKPAK--ILVCQKSDCRQRGGQAVCRVLEQALCDRGLHD----QVKIEKTGCLKKCKLG 157

Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFST 174
           P  +VM  K  Y  + P  + E+I+    
Sbjct: 158 PNLVVMPDKAHYTRVKPSDISEVIEKHLA 186


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G E + +    K+         D  +S  E  C GAC   P+ ++  
Sbjct: 7   TILICAGGGCISAGEESVKQAFERKLK----EYGLDTVVSVVETGCMGACSLGPLAIVYP 62

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y+ LTP+  E+I++ 
Sbjct: 63  DGVYYQKLTPKAAEKIVEE 81


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+H+ VC  T C      K+IE    ++  + + + +       +  C G C   P+VMI
Sbjct: 5   RSHILVCTGTGCTSSNSLKIIEAFERELEAQGMAKEA----QVVKTGCFGLCAMGPIVMI 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +TP  + EI+  
Sbjct: 61  YPEGACYTKVTPADVPEIVSE 81


>gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
 gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
          Length = 537

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            ++ C    C   G   L +          + R     +    V C G C + P+V +  
Sbjct: 21  CIRCCTALGCQSAGSLSLKQRLEEA--VAEVDRTD---IEVMGVGCMGLCGHGPLVRVDP 75

Query: 154 -KDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               YE +       I+ A   G+    +  P
Sbjct: 76  EGTLYEHVRAADAPSIVAALDGGEATAPKGDP 107


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score = 57.8 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G R  V VCG T C       +++  + ++  K +   +D  +      C G C   
Sbjct: 32  KETGYRKQVLVCGGTGCQSSHSMDVLKALKEELAAKGI---AD-EVLVVRTGCFGLCSLG 87

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P+V++      Y   TPE ++ I+D 
Sbjct: 88  PIVIVYPEGAFYAQATPEGIKRIVDE 113


>gi|332712123|ref|ZP_08432051.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L]
 gi|332348929|gb|EGJ28541.1| hypothetical protein LYNGBM3L_72950 [Lyngbya majuscula 3L]
          Length = 185

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +A + VC  + C  RG + +     + +    L       +  +E  C   C + P  +
Sbjct: 105 RKASILVCQKSSCRKRGGQAVCNAIASSLKDHGLED----QVKIKETGCLKQCKHGPNLV 160

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           +M  K  Y ++ P+++  +I+ 
Sbjct: 161 MMPDKARYSEVAPQQIPTLIER 182


>gi|307718916|ref|YP_003874448.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM
           6192]
 gi|306532641|gb|ADN02175.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM
           6192]
          Length = 91

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146
           ++  + VC  T C + G   L+   R+ +  +         L WE   C   C       
Sbjct: 2   SKIRITVCVGTACYVMGGADLL-ALRDALPPEWAS-----HLEWEGTPCLNHCREFGTER 55

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           AP V++  +    +TPERL+  I     G  D  R
Sbjct: 56  APFVLVDGNLLAGVTPERLKAEIARLIAGGTDAER 90


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G +K+ E    +I +  L       +   +  C G C   P++++
Sbjct: 3   RSHVLVCGGTGCTSSGSQKIREKLEAEIKKNGLE----NEVGVVKTGCFGLCALGPIMIV 58

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E + EI++ 
Sbjct: 59  YPEGSFYAMVKEEDIPEIVEE 79


>gi|332298929|ref|YP_004440851.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168]
 gi|332182032|gb|AEE17720.1| hypothetical protein Trebr_2311 [Treponema brennaborense DSM 12168]
          Length = 81

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  + C  RG     EV +  + +  L       ++     C+  C N P V I  
Sbjct: 3   TITVCMGSSCFSRGNSANAEVIQRFLTENDLQD----KVTLRGCLCESECKNGPNVRIDG 58

Query: 155 DTYEDLTPERLEEII 169
             Y ++TPE L +++
Sbjct: 59  KLYTNMTPESLVDLL 73


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +     I +K       G +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKAI-EKNGIT---GKVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|254410381|ref|ZP_05024160.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182587|gb|EDX77572.1| hypothetical protein MC7420_2896 [Microcoleus chthonoplastes PCC
           7420]
          Length = 101

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ VC +          C  +    LI+   ++I  + L    D  +S     C   C 
Sbjct: 6   HHIFVCSSFRVNGNAKGVCQKKDSTNLIQYLESEITDRGL----DALVS--STGCMNLCN 59

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176
           N P++M+      Y ++  E ++EI+DA   G+
Sbjct: 60  NGPVMMVYPDNYWYGNVDEEAIDEILDALEDGK 92


>gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47FAA]
          Length = 1032

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  V VCG   C+   C ++ +        +    +  G +      C G C   P++++
Sbjct: 25  RRQVLVCGGAGCISSNCGEVRDALVKA--VENFQLS--GEVQVMVTGCMGTCAMGPVILV 80

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +TP+++E+++  
Sbjct: 81  EPEGVFYTKMTPDKVEQVVAR 101


>gi|300313591|ref|YP_003777683.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
 gi|300076376|gb|ADJ65775.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 94  AHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            HV  C         T C  +G +   E  + +   K L  ++ G +   +  C   C  
Sbjct: 9   HHVFFCLNQRQPGERTCCADKGAQAAQEHAKKR--IKQLGLSAPGKVRINKAGCLERCEE 66

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+V+I      Y  +  E ++EIID+   G
Sbjct: 67  GPVVVIYPQGTWYTYVDKEDIDEIIDSHIVG 97


>gi|166368041|ref|YP_001660314.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa
           NIES-843]
 gi|166090414|dbj|BAG05122.1| iron-sulfur cluster-binding protein like [Microcystis aeruginosa
           NIES-843]
          Length = 184

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148
              +A V +C  + C   G  ++ +   + + +K L       ++ +   C   C   P 
Sbjct: 92  KAKKATVLICQKSDCWKNGGARVCQRLESGLEEKGLGE----AVNIKLTGCLKQCKKGPN 147

Query: 149 -MVMIGKDTYEDLTPERLEEIIDAFST 174
            +VM  K  Y  + P+ +  +I+    
Sbjct: 148 LVVMPDKKHYNQVAPQDVPSLIERHFA 174


>gi|154150692|ref|YP_001404310.1| ferredoxin, 2Fe-2S [Candidatus Methanoregula boonei 6A8]
 gi|153999244|gb|ABS55667.1| ferredoxin, 2Fe-2S [Methanoregula boonei 6A8]
          Length = 102

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C  +    ++     +I      R+  G +      C G 
Sbjct: 4   PKHHIFVCTSSRANGQQKGFCHSKEGVAIMSRFMEEI----EERDCGGEVFLSNTGCFGI 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V++      Y  +TP+ + EI+D    G
Sbjct: 60  CDKGPVVVVYPDNVWYGAVTPDDVTEIMDTHIEG 93


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+H+ VCG T C+  GCE++ E  + ++  K    N    +   E  C G C   P++++
Sbjct: 7   RSHILVCGGTGCVSSGCEEVQEALKEELD-KQGLTNE---IKIVETGCHGFCEKGPILIV 62

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y ++ PE LEE+++ 
Sbjct: 63  YPEGVFYCEVQPEDLEELVEE 83


>gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
 gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
          Length = 572

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            + VC +TPC+  G   +     +          +D  +      C G C   P++ +  
Sbjct: 23  RILVCCSTPCLSSGAAAIKSALESA----VAEHQADMAIEAVATGCMGPCSRGPVLTVQQ 78

Query: 154 ----KDTYEDLTPERLEEIIDAF-STGQGDTIRPGP 184
                  YE +T E   E++  +  TG   T +  P
Sbjct: 79  PGAADTVYEHVTGEFAVELVQHYARTGTLPTQQQVP 114


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ VCG T C+    ++L E  +  + ++ L       +      C G C   P+V +
Sbjct: 4   KMHILVCGGTGCISSQSDRLAEALKEALAKRGLAE----EVKVVLSGCFGFCEQGPIVKV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +TPE  +EI+  
Sbjct: 60  APDNTFYVKVTPEDADEIVAE 80


>gi|315187126|gb|EFU20883.1| hypothetical protein SpithDRAFT_0491 [Spirochaeta thermophila DSM
           6578]
          Length = 91

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VN 146
           ++  + VC  T C + G   L+   R+ +  +         L WE   C   C       
Sbjct: 2   SKIRITVCVGTACYVMGGADLL-ALRDALPPEWA-----PHLEWEGTPCLNHCREFGTER 55

Query: 147 APMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           AP V++  +    +TPERL+  I     G  D  R
Sbjct: 56  APFVLVDGNLLAGVTPERLKAEIARLIAGGTDAER 90


>gi|196249200|ref|ZP_03147899.1| putative ferredoxin [Geobacillus sp. G11MC16]
 gi|196211429|gb|EDY06189.1| putative ferredoxin [Geobacillus sp. G11MC16]
          Length = 132

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145
            G + HV +C    C+  G + +    R +   +      H             C G C 
Sbjct: 7   RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
           +A ++++      Y  +TPE+ +E +     G+G  +R        ++    G   L   
Sbjct: 59  DACVMIVYPDGVWYRQMTPEKAKE-VARVHLGEGVPLR------EWATYEYEGELVLTPI 111

Query: 204 NSKKRGKKKKDDK 216
             ++    K+ ++
Sbjct: 112 GEREAASGKRKNE 124


>gi|195400737|ref|XP_002058972.1| GJ15321 [Drosophila virilis]
 gi|194141624|gb|EDW58041.1| GJ15321 [Drosophila virilis]
          Length = 71

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 1  MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQS 40
          + V R   E+     F FS E+   V+ ++S YP    + 
Sbjct: 31 LFVHRDTPEDNPSIPFEFSAENKKRVDAILSIYPEGHKRG 70


>gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
 gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
          Length = 601

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 38/140 (27%)

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
                 + A  L                   +    +  + VC  + C+  G  ++++  
Sbjct: 3   PEELQRIAAEELQ------------------AKSAAKHRIGVCTASGCLSCGSREVLKAI 44

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT---------------YEDLT 161
             +   +P     +  L  E V C G C   P+VM+                   +++LT
Sbjct: 45  EQEAAARP-----EANLRIEGVGCMGLCSRGPLVMVQSGPVPAENSGAGAETAFLFKELT 99

Query: 162 PERLEEIIDAFSTGQGDTIR 181
           P     ++      + D   
Sbjct: 100 PADAPALVAYLEQQKSDPPT 119


>gi|159029412|emb|CAO90788.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 191

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148
              +A V +C  + C   G  ++ +   + + +K L       ++ +   C   C   P 
Sbjct: 99  KAKKATVLICQKSDCWKNGGARVCQRLESSLEEKGLGE----AVNIKLTGCLKQCKKGPN 154

Query: 149 -MVMIGKDTYEDLTPERLEEIIDAFST 174
            +VM  K  Y  + P+ +  +I+    
Sbjct: 155 LVVMPDKKHYNQVAPQDVPSLIERHFA 181


>gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 547

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+ VC  T C  +  +++I+     + +K         +   +  C G C   P++ I
Sbjct: 5   RLHMLVCAGTACESQESKEIIKNLEETLKEKGYE----KEVQIVKTGCFGFCEKGPIIKI 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y ++ PE + EI++ 
Sbjct: 61  HPDHVFYVEVKPEDVNEIVEE 81


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     +++ +    +I  K L    D  +      C G C   P+V++
Sbjct: 4   RSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGL----DKEVQVVRTGCFGLCELGPVVVV 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E + EI++ 
Sbjct: 60  YPEGVFYSCVKEEYVPEIVEE 80


>gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
          Length = 538

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            V  C +T C       + +        K         +    V C G C   P+V I  
Sbjct: 21  RVHCCTSTGCQAANSLGVKKNLEGA--VKAADLGD--RVQVVGVGCMGFCGRGPLVEIDP 76

Query: 154 -KDTYEDLTPERLEEIIDAFSTG 175
               YE++TP+    II++ + G
Sbjct: 77  QDKLYEEVTPDDAASIIESLNGG 99


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        K         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IKKSEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+H+ +CG T C+  GCE++ +   +++            ++  E  C G C   P+++I
Sbjct: 7   RSHIIICGGTGCVSSGCEEVQKALEDEL--DKQDLTD--EINIVETGCHGLCEKGPVMVI 62

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y +L PE +EE++  
Sbjct: 63  YPEGIFYCELQPEDMEELVTE 83


>gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 604

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL-----SWEEVECQGACVNAP 148
             + VC  T C+  G  ++ +  ++ +       + D  +     S     C G C   P
Sbjct: 10  HLLLVCCGTGCVANGAREVYQALKDNL------TSDDKAVLAATTSARATGCHGLCAQGP 63

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            V I     TY  +    + EI++     G+
Sbjct: 64  FVRILPEDITYCRVKAADIPEIVEKTLKQGE 94


>gi|307352421|ref|YP_003893472.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM
           11571]
 gi|307155654|gb|ADN35034.1| Sucraseferredoxin family protein [Methanoplanus petrolearius DSM
           11571]
          Length = 102

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C  +    ++     +I ++ L     G +      C G 
Sbjct: 4   PKYHIFVCSSSKPNGQQKGYCHSQAGVDILMRFVEEIDERDLG----GEVFVNNTGCFGI 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V++      Y  +TP+ +EEI+D    G
Sbjct: 60  CDKGPIVVVYPDNVWYGSVTPDDVEEILDEHIEG 93


>gi|325679184|ref|ZP_08158775.1| hypothetical protein CUS_5481 [Ruminococcus albus 8]
 gi|324109113|gb|EGC03338.1| hypothetical protein CUS_5481 [Ruminococcus albus 8]
          Length = 83

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153
            +Q+C  + C L+G E +IE+ +  I    L       ++     C G C      V + 
Sbjct: 2   IIQICVGSSCHLKGSEDMIELLKQAISTHDLE----NEVTLAGSFCAGRCNRVGVTVTVD 57

Query: 154 KDTYEDLTPERLEE 167
            + Y  +TPE   E
Sbjct: 58  DEVYTGVTPEGFAE 71


>gi|307718919|ref|YP_003874451.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM
           6192]
 gi|306532644|gb|ADN02178.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM
           6192]
 gi|315187123|gb|EFU20880.1| hypothetical protein SpithDRAFT_0488 [Spirochaeta thermophila DSM
           6578]
          Length = 84

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  + C  RG    ++V R  +         D  +      C G C   P+V IG  
Sbjct: 7   IVVCMGSSCHARGNALTVKVIRAWL----EEHGLDQDVEVRGELCSGRCKEGPVVRIGNR 62

Query: 156 TYEDLTPERLEEII 169
            YE + PE + +I+
Sbjct: 63  IYERVQPEAVPDIL 76


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G + + +    ++  K      D  +   E  C GAC   P+ +I  
Sbjct: 10  TILICAGGACISAGEKSVKDAFEEELK-KYG---LDEVVRVIETGCMGACTLGPIAVIYP 65

Query: 153 GKDTYEDLTPERLEEIIDA------------FSTGQGDTIRPGPQID 187
               Y+ LTP+  +EI++             +   +G   +P P++ 
Sbjct: 66  EGVFYQKLTPDAAKEIVEEHILKGRIVEKHLYRAPEG---KPVPRVH 109


>gi|310826807|ref|YP_003959164.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612]
 gi|308738541|gb|ADO36201.1| NADH dehydrogenase subunit E [Eubacterium limosum KIST612]
          Length = 83

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  + C ++G  ++++  +  + ++ L       +      C  AC +   V +   
Sbjct: 4   IHICIGSACHVKGSYQVVQRFKELVAERGLE----NEVELMGTFCLDACSDGVAVKVDDH 59

Query: 156 TYEDLTPERLEEIIDAFSTGQ 176
            Y  + PE ++++ D    G 
Sbjct: 60  IYT-VKPEGVDQLFDQIMEGN 79


>gi|257061417|ref|YP_003139305.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802]
 gi|256591583|gb|ACV02470.1| hypothetical protein Cyan8802_3657 [Cyanothece sp. PCC 8802]
          Length = 182

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +  + VC  + C  RG E L +    K+  + L       +  +   C   C N P  +
Sbjct: 102 DKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLGD----QVEIKLTGCLKQCKNGPNVV 157

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           V+  K  Y  + P +++++++ 
Sbjct: 158 VLPDKARYSQVHPRQVDKLLEK 179


>gi|218247247|ref|YP_002372618.1| iron-sulfur cluster-binding protein-like protein [Cyanothece sp.
           PCC 8801]
 gi|218167725|gb|ACK66462.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
           PCC 8801]
          Length = 182

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +  + VC  + C  RG E L +    K+  + L       +  +   C   C N P  +
Sbjct: 102 DKKRILVCQKSSCWKRGGETLCQQLETKLCDRGLGD----QVEIKLTGCLKQCKNGPNVV 157

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           V+  K  Y  + P +++++++ 
Sbjct: 158 VLPDKARYSQVHPRQVDKLLEK 179


>gi|313836940|gb|EFS74654.1| hypothetical protein HMPREF9621_00930 [Propionibacterium acnes
           HL037PA2]
 gi|314929469|gb|EFS93300.1| hypothetical protein HMPREF9607_00513 [Propionibacterium acnes
           HL044PA1]
 gi|314971446|gb|EFT15544.1| hypothetical protein HMPREF9622_01318 [Propionibacterium acnes
           HL037PA3]
 gi|328906873|gb|EGG26639.1| ferredoxin [Propionibacterium sp. P08]
          Length = 263

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+ VC    C  +G   L +V  NK+ Q          ++     C   C +AP+V+I
Sbjct: 166 RHHLLVCRGPRCCAQGAVALHDVLHNKLVQADAIDTE-VLVTV--TGCMFPCNHAPLVVI 222

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDT-----IRPGPQ 185
                    LT + ++EI+   S  Q  +       P P 
Sbjct: 223 WPDGKCL-RLTEDNIDEIVRDLSAPQEASLTASMPPPTPD 261


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VCG T C   G  K+IE    ++    L       +   +  C G C   P++++  
Sbjct: 33  HVLVCGGTGCTSSGSPKIIEKLEEELAANGLKD----KVQIVKTGCFGLCERGPIMIVYP 88

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
               Y  +  + +  I++    G G+ ++
Sbjct: 89  EGSFYSRVKVDEIPRIVEEHLVG-GNPVK 116


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R HV VC  T C       ++E  + ++         D  +   +  C G C   P+V 
Sbjct: 32  ERLHVLVCAGTGCTSSSSALIMEQMQQQL-IARG---LDQEVRVIKTGCFGLCQKGPIVA 87

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +   K  Y  + P+ + EII+    G G  ++
Sbjct: 88  VYPDKIFYCHVKPDDVGEIIEQHFIG-GQPVK 118


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T   + +CG T C     + + E  +     +         +    V C G C   P+V 
Sbjct: 42  THLQILICGGTGCKASSSQGITENLQKA--IERNGITD--KVDVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII     G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIISEHIIG 123


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G +++IE    +I  + L       +   +  C G C   P++++
Sbjct: 5   RSHVLVCGGTGCTSSGSQRIIEKLEKEIKAQGLED----EVGVVKTGCFGLCALGPIMIV 60

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  +  E + EI+ +    G+
Sbjct: 61  YPEGSFYSMVQEEDIPEIVSEHLLKGR 87


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + E  +     +         +    V C G C   P+V 
Sbjct: 42  AHLQILICGGTGCKASSSQGITENLQKA--IERNGITD--KVDVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII     G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIISEHIIG 123


>gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 530

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVM 151
           R  + VC  + C+  G +KL+   R+++ Q+P     +DG      V C G C   P+VM
Sbjct: 22  RHRIGVCTASGCLSCGSDKLLSSLRDQLAQQPQISARADG------VGCMGLCSKGPLVM 75

Query: 152 I------------------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +                      Y  L PE    ++ + +        P 
Sbjct: 76  VQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLADSGSGEQTPA 125


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R HV VCG T C   G  ++ E    +   +    +    +   +  C G C   P++++
Sbjct: 47  RTHVLVCGGTGCTSSGSARIRERLEKE--IEANGLSD--EVCVVKTGCFGLCALGPIMIV 102

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
                 Y  +  E + EI+      +G+ ++ 
Sbjct: 103 YPEGTFYSMVQEEDIPEIVTEH-LLKGNVVKH 133


>gi|22212574|dbj|BAC07503.1| NADH-ubiquinone oxidoreductase 24kDa subunit [Phanerochaete
           chrysosporium]
          Length = 56

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 159 DLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKRGKKKK 213
           DLTPE  ++++DAF   +G+  +PGPQ  R +S  + GLT+L  +     G    
Sbjct: 1   DLTPETTKKVLDAFK--KGEKPKPGPQSGRHTSENSAGLTALT-SEPYGPGAFCT 52


>gi|119513294|ref|ZP_01632334.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414]
 gi|119462057|gb|EAW43054.1| hypothetical protein N9414_09761 [Nodularia spumigena CCY9414]
          Length = 218

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P   +  + VC  + CM RG + + +     +  + L       ++ +   C   C 
Sbjct: 111 KTKPAKNKETILVCQKSDCMKRGGKAVCQALEAALSNRGLED----QVTIKGTGCMKKCK 166

Query: 146 NAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
             P +VM  K  Y  +   ++  I+D       +  +P
Sbjct: 167 AGPNIVMPDKTRYSRIPSTQVPAIMDKHFADIREEEQP 204


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score = 57.1 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G  +++E  + +        +    +S  +  C G C   P+++I
Sbjct: 3   RSHVLVCGGTGCTSSGSLQIMETLKAE--IDKNGLSE--EVSVVQTGCHGLCALGPIMII 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  +  E + EI+ +    G+
Sbjct: 59  YPDATFYAMVKNEDIPEIVSEHLLKGR 85


>gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens
           PCA]
 gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens
           PCA]
 gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 570

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  TPC+  G   +++  R            D  +      C G C   P+V +
Sbjct: 21  RCRIMVCAGTPCLSAGALAVLDALRQA----VEESRLDAEIEAVSTGCMGPCSRGPLVKV 76

Query: 153 G-----KDTYEDLTPERLEEIIDAFSTG-QGDTIRPGP 184
                 +  YE +TPE   +I+ +   G +  T  P P
Sbjct: 77  AVQGKPEIVYERVTPELARQILYSVVKGRRPPTASPLP 114


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G + + +  ++ +         D  +   E  C GAC   P++++  
Sbjct: 7   TILICAGGACISAGEKSVKDALQDLLK----EYALDSVVKIIETGCMGACDLGPIIIVYP 62

Query: 153 GKDTYEDLTPERLEEIIDA-----------FSTGQGDTIRPGPQ 185
               Y+ LTPE +  +++               G+   ++  PQ
Sbjct: 63  EGIFYQKLTPENVRRVVEEHLLKGRIVEDMLYKGEFGEVKAKPQ 106


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ VCG T C+    + L +  ++ + ++ L       +      C G C   P+V +
Sbjct: 5   KMHILVCGGTGCISSQSDVLAQALKDALKEQGLE----NEVKVVLSGCFGFCEQGPIVKV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +TPE   EI+  
Sbjct: 61  APDNTFYVKVTPEDAGEIVAE 81


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150
           + H+ VCG T C     + +I    + + ++ L       +      C G C   P+V  
Sbjct: 4   KMHILVCGGTGCRASASKNIICRLEDCLKERALED----EVQVIATGCFGFCEKGPIVKI 59

Query: 151 MIGKDTYEDLTPERLEEIIDA 171
           M     Y  + PE  EEI++ 
Sbjct: 60  MPDNTFYVQVKPEDAEEIVNE 80


>gi|307267725|ref|ZP_07549170.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917256|gb|EFN47585.1| hypothetical protein ThewiDRAFT_2829 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 84

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + VC  + C L+G  ++I+     I    L  +    +  +   C G C     V +G
Sbjct: 2   VEITVCVGSSCHLKGAYEVIKEFERLIPFYGLENS----VELKAGFCLGRCTEGVTVKVG 57

Query: 154 KDTYEDLTPERLEEIIDAFSTGQ 176
              +  + P+ +  +++A   G 
Sbjct: 58  DRYFTSVAPKDVAGLLEAVKNGN 80


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C     + + +        +         +    V C G C   P+V 
Sbjct: 42  QHLQILICGGTGCKASSSQGITDNLLKA--IQKNEITD--KVEVITVGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEII+    G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIINEHIIG 123


>gi|24217226|ref|NP_714709.1| putative cbiX protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655717|ref|YP_003526.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|24202278|gb|AAN51724.1| ferredoxin-related protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602688|gb|AAS72163.1| ferredoxin [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 389

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ VC +  C+ +G   LI   R+    +   R SD      +  C G C   P V+I
Sbjct: 297 KKHIFVCDSVDCVNQGSISLIHKIRSF--IRKHGRQSD--FRVSKSSCLGRCGEGPTVVI 352

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y+ ++ +  +E++D 
Sbjct: 353 YPDGIWYQRVSEDDAKELVDE 373


>gi|71909767|ref|YP_287354.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB]
 gi|71849388|gb|AAZ48884.1| Fe2-S2-type ferredoxin [Dechloromonas aromatica RCB]
          Length = 102

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + HV VC          C   G   +    +++I    L  N  G +   +  C G C N
Sbjct: 5   KHHVFVCTNQREGGEQCCNNVGGSDMFAYAKDRIG--ALKLNGAGAVRINKAGCLGRCDN 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P++++   +  Y  +  E +EEII     G
Sbjct: 63  GPVMVVYPEETWYSFIDKEDVEEIIQEHLIG 93


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score = 56.7 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G ++LIE   N+   + LH +    +   +  C G C   P V+I
Sbjct: 5   RSHVLVCGGTGCTSSGAQQLIEALNNE--IERLHLS--NEVKVVQTGCLGLCERGPNVVI 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + PE   +I + 
Sbjct: 61  YPEGAYYCHVKPEDARDIAEE 81


>gi|261420011|ref|YP_003253693.1| ferredoxin [Geobacillus sp. Y412MC61]
 gi|319766826|ref|YP_004132327.1| ferredoxin [Geobacillus sp. Y412MC52]
 gi|261376468|gb|ACX79211.1| putative ferredoxin [Geobacillus sp. Y412MC61]
 gi|317111692|gb|ADU94184.1| putative ferredoxin [Geobacillus sp. Y412MC52]
          Length = 132

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145
            G + HV +C    C+  G + +    R +   +      H             C G C 
Sbjct: 7   RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           +A ++++      Y  +TPE+ +E++      G+
Sbjct: 59  DACVMIVYPDGVWYRLMTPEKAKEVVQRHLQNGE 92


>gi|317133835|ref|YP_004089746.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7]
 gi|315450297|gb|ADU23860.1| hypothetical protein Rumal_3404 [Ruminococcus albus 7]
          Length = 83

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153
            +Q+C  + C L+G E +IE+ +  I    L       ++     C G C      V + 
Sbjct: 2   IIQICVGSSCHLKGSEDMIELLKQAIATHDLE----NEITLAGSFCAGRCNRVGVTVTVD 57

Query: 154 KDTYEDLTPERLEE 167
            + Y  +TPE   E
Sbjct: 58  DEVYTGVTPEGFTE 71


>gi|157363820|ref|YP_001470587.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermotoga lettingae TMO]
 gi|157314424|gb|ABV33523.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermotoga lettingae TMO]
          Length = 99

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    ++VC  + C L+G  K+++     + +K       G+L      C G C +   V
Sbjct: 23  GDFMLIRVCMGSSCHLKGSYKIVQKIEQ-LRKKYPEIQLYGSL------CFGRCSDGICV 75

Query: 151 MIGKDTYEDLTPERLEEIIDAFST 174
            I    Y  +  + +E+II+   T
Sbjct: 76  EIDGKLYTHVDDKNIEKIIEEAKT 99


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 16/133 (12%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR-----NSDGT-LSWEEVECQGA 143
            G +  + VC  T C+  G  K+ E  +  + +K L+        D   ++     C G 
Sbjct: 20  AGEKMKILVCAGTGCISGGSLKVYEAIKKLLEEKNLYVDIDLYTEDKEGVNVSPSGCHGF 79

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP-AGGLTSL 200
           C   P+V +      Y  +  E  +EI++        T+  G  ++R+       G   +
Sbjct: 80  CQMGPIVRVEPQGYFYVKVKEEDAQEIVEK-------TVEKGEPVERLLYKSHEDGQAFM 132

Query: 201 LDNNSKKRGKKKK 213
            +++    GK+ +
Sbjct: 133 TEDSIPFYGKQSR 145


>gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 562

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTLSWEEVECQGACVNAPMVM 151
           R  + VC  + C+  G +KL+   R+++ Q+P     +DG      V C G C   P+VM
Sbjct: 22  RHRIGVCTASGCLSCGSDKLLSSLRDQLEQQPQISARADG------VGCMGLCSKGPLVM 75

Query: 152 I------------------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           +                      Y  L PE    ++ + +        P 
Sbjct: 76  VQHHHDQGVAGDDSKPLATDSQLYLQLHPEDAPALVASLADSGSGEQTPA 125


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C     +K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSDKIVESLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  +TPE  +EI +     G+
Sbjct: 99  NVFYVKVTPEDAKEIAEKHLLKGE 122


>gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8]
 gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8]
          Length = 252

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
              G R  V VCG T C       +++  ++++  + +   +D  +      C G C   
Sbjct: 32  KETGYRKQVLVCGGTGCQSSHSMDVLKALKDELAAQGI---AD-EVLVVRTGCFGLCSLG 87

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P+V++      Y   TPE ++ I+D 
Sbjct: 88  PIVIVYPEGAFYSQATPEGIKRIVDE 113


>gi|119896654|ref|YP_931867.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
 gi|119669067|emb|CAL92980.1| putative ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
          Length = 106

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 17/96 (17%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGA 143
           + HV  C        T C   G   +    +    ++  K       G++   +  C G 
Sbjct: 5   KHHVFFCCNQRQGGETSCNDHGASAMQVYAKERTAELGLKGK-----GSVRINKAGCLGR 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           C + P++++      Y  +  + ++EII+   + G+
Sbjct: 60  CDDGPVLVVYPDNVWYTYVDKDDIDEIINEHLAHGR 95


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R+ + +CG T C   G + L++  + ++ +  L       +      C G C   P+V+
Sbjct: 4   KRSQILLCGGTGCTSSGSQTLVKEFKKELIKHELMD----EVELVITGCFGLCELGPVVI 59

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +      Y  + P  + E+++ 
Sbjct: 60  VYPEGTFYSRVEPSDIPELVEE 81


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score = 56.3 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
              +  V VCG T C     +++I+  +  +  + ++ +S   +S +   C G C   P+
Sbjct: 36  KKDKIEVLVCGGTGCKSSNSDEIIKNFK--LEIENINLSS--KVSVKMTGCFGFCEKGPI 91

Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171
           V I      Y  ++P+ + EI++ 
Sbjct: 92  VKIIPDNTFYIHVSPKDVAEIVEE 115


>gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 551

 Score = 55.9 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +AH+ VCG   C+   C ++++  +  ++ K         +      C G C   P+ ++
Sbjct: 17  KAHIMVCGGQGCISSKCGEVVDALKESLN-KNGLTE---QVRIILTGCMGPCDMGPVAIV 72

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  L P+  E I++ 
Sbjct: 73  YPDATFYRRLRPKDAEAIVEE 93


>gi|158320104|ref|YP_001512611.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs]
 gi|158140303|gb|ABW18615.1| hypothetical protein Clos_1068 [Alkaliphilus oremlandii OhILAs]
          Length = 83

 Score = 55.9 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 99  CGTTPCMLRGCEKLIEVCR--NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           C +  C +     + E  +   ++  +            +E  C G C   P+V I    
Sbjct: 12  CKSQSCNINKGVDIFEELKMYEELFLEKNIV-----FDVKECGCLGKC-KGPVVKINGKI 65

Query: 157 YEDLTPERLEEIIDAF 172
           Y  +  +++EEI++  
Sbjct: 66  YTKVDADKVEEILNEL 81


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score = 55.9 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +CG T C   G  K+ +  + +I++  L       +   +  C G C N P++++
Sbjct: 3   RSHVLICGGTGCTSSGSLKIYDKLQEEINKNGL----SKEVQVVKTGCFGLCANGPIMIV 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKK 207
                 Y  +  E + EI+ +    G+  T     ++    +    G+ SL D +  K
Sbjct: 59  YPEGTFYSMVNVEDIPEIVSEHLLKGRIVT-----RLVYQETVEEDGIKSLNDTDFYK 111


>gi|77919428|ref|YP_357243.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380]
 gi|77545511|gb|ABA89073.1| hypothetical protein Pcar_1832 [Pelobacter carbinolicus DSM 2380]
          Length = 82

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  + C  RG ++ +E+              D  +      C+G C   P+  I
Sbjct: 2   KKQIVICMGSSCFSRGNDRNLEIIEEF--IARHQL--DAEVDLRGSRCEGRCDQGPVFKI 57

Query: 153 GKDTYEDLTPERLEEIIDA 171
               +       + EI+  
Sbjct: 58  DDKIFSHANQSDIVEILKE 76


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C     +K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  +TPE  +EI +     G+
Sbjct: 99  NVFYVKVTPEDAKEIAEKHLLKGE 122


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C     +K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  +TPE  +EI +     G+
Sbjct: 99  NVFYVKVTPEDAKEIAEKHLLKGE 122


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C     +K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSDKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA 171
              Y  +TPE  +EI + 
Sbjct: 99  NVFYVKVTPEDAKEIAEK 116


>gi|313125123|ref|YP_004035387.1| hypothetical protein Hbor_03430 [Halogeometricum borinquense DSM
           11551]
 gi|312291488|gb|ADQ65948.1| uncharacterized conserved protein [Halogeometricum borinquense DSM
           11551]
          Length = 404

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R          + D  + +    C G C + P+V +  
Sbjct: 315 HVAVCTNQTCAASGAATVLEQLRQH-----ARDSDDCDVHFSRSSCLGQCGDGPIVAVYP 369

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +TP+  E I+ +
Sbjct: 370 DSIWYGSVTPDDTERIVSS 388


>gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIH-QKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GK 154
           VC  T C   G E+++   + +I             +  ++  C G C   P+V+I    
Sbjct: 9   VCLGTGCQSGGAEEVLSSLKEEIDRLSLGET-----VQVKQTGCHGFCQRGPLVVIEPEG 63

Query: 155 DTYEDLTPERLEEIIDAFSTGQGDTIR 181
             Y  ++ + + EI  +   G+    R
Sbjct: 64  IFYSKVSLDDVSEIAKSLLPGEPPVDR 90


>gi|217076874|ref|YP_002334590.1| hydrogenase-1 [Thermosipho africanus TCF52B]
 gi|217036727|gb|ACJ75249.1| hydrogenase-1 [Thermosipho africanus TCF52B]
          Length = 658

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V+VC  T C  +G   ++    + ++++   +N    +  +   C   C  +P V+
Sbjct: 576 KKTTVKVCLGTSCYSKGSYDILSDLIDVVNKEEWAKN----VEIKGTFCVENCGKSPNVV 631

Query: 152 IGKDTYEDLTPERLEEIIDA 171
           I      + T E+++E++  
Sbjct: 632 IDDTIVSEATTEKVKEVLKK 651


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           R+H+ VCG T C   G ++++   +    K   K         ++  +  C G C   P+
Sbjct: 3   RSHILVCGGTGCTSSGSQQILNALQTEIEKAGLKE-------EVAVVQTGCHGLCALGPI 55

Query: 150 VMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
           ++I      Y  +  + + EI+ +    G+
Sbjct: 56  MLIYPEGTFYSMVNVDDIPEIVTEHLLKGR 85


>gi|163784277|ref|ZP_02179193.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880453|gb|EDP74041.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
          Length = 111

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV VC          C  +G +K+    +  +  KP        ++     C G C+  P
Sbjct: 8   HVFVCMQNKPPGMPSCGSQGSDKIFMKFQEVLMSKPELMT---KMAVTPTGCLGPCMFGP 64

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            V++      Y  +TPE +EEII+    G     R
Sbjct: 65  NVVVYPDAVWYGRVTPEDVEEIIEKHIIGGEPVER 99


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +CG T C   G  ++++  R ++  + L    D  +      C G C   P+V++
Sbjct: 5   RSHVLICGGTGCTSSGSHEVMDAFREELRNQKL----DREVLIVPTGCHGMCEMGPIVVV 60

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  +  E ++EI+ +    G+
Sbjct: 61  YPEGTFYCRVKAEDVKEIVSEHLLKGR 87


>gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
 gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
          Length = 1048

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  V VCG   C+   C+ + +V    +    L       +      C G C   P++++
Sbjct: 41  KRQVLVCGGAGCISSHCQDVKDVLFEALKTYKLED----EVEVLVTGCMGTCALGPVILV 96

Query: 153 --GKDTYEDLTPERLEEII 169
                 Y  + PE++E ++
Sbjct: 97  QPDGVFYTKMDPEKVENVV 115


>gi|281358775|ref|ZP_06245250.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
 gi|281314730|gb|EFA98768.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
          Length = 79

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  + C  RG ++ +++    +    +     G        C G C   P + I
Sbjct: 2   KHTIVICMGSSCFARGNKRNLKIIEEYLAGHRIDCTLTGR------GCVGKCRTGPNLSI 55

Query: 153 GKDTYEDLTPERLEEIIDA 171
             + +E +  E L ++++A
Sbjct: 56  DGENFERVDSESLIDLLEA 74


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P   + H+ VC  T C     +++I+    +   K       G     +  C G C 
Sbjct: 24  DHRPASEQRHLLVCAGTACTSSASQEIIKELDRQ--IKEHKLT--GKAKVFKTGCFGFCQ 79

Query: 146 NAP--MVMIGKDTYEDLTPERLEEIIDAFSTG 175
             P  +V      Y  +  E ++++++    G
Sbjct: 80  QGPIVVVQPDNIFYCRVKKENVKDLVEKHIIG 111


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
               R  + VCG T C     + ++   + +   +    +    ++ E   C G C   P
Sbjct: 37  KRCKRY-ITVCGGTGCKSAEGDVIVSNLKAE--VEKAGLSE--EVTVEIAGCFGFCEKGP 91

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           +V I      Y  +TPE  ++I++     G+
Sbjct: 92  IVKISPDNVFYVHVTPEDTQDIVNEHLLKGK 122


>gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422]
          Length = 541

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             ++ C    C+  G   + E    K   +         +    V C G C  AP+V + 
Sbjct: 20  TRIRCCMAAGCLSSGAVAVKESLE-KTKAEIGLT---DKVEVRSVGCMGLCCQAPLVQVD 75

Query: 154 KD--------TYEDLTPERLEEIIDAFSTGQGDTIR 181
           +          YE +TPE +  I+      +    +
Sbjct: 76  RSEVQGFIPLLYEKVTPEIVSSIVAELQGDEIKVQK 111


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQG 142
           G R  + VC  T C+  G +K+++     + +  L          + DG +      CQG
Sbjct: 19  GGRRVI-VCAGTGCVANGSKKVLDALEKHMGEAGLDVVLEFRPEGHGDG-VRVSHSGCQG 76

Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
            C   P+V I      Y  +T + + EI+ +    G+
Sbjct: 77  FCQMGPLVTILPENILYTKVTADDVAEIVTETLVAGK 113


>gi|326383960|ref|ZP_08205644.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197419|gb|EGD54609.1| ferredoxin-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 244

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G  +      + +  + L    D  ++     C   C  AP+V +  
Sbjct: 150 HVLVCRGPRCSANGAPETQAALTDALEAQALGD-DDVLVTL--TGCLFPCSQAPVVAVYP 206

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAP 193
               Y  LT +R+  +++    G G+ IR    I   +S P
Sbjct: 207 DGVWYAGLTADRVATVVEQHLVG-GEPIRG--WIGERASRP 244


>gi|116329721|ref|YP_799440.1| ferredoxin related-protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332604|ref|YP_802321.1| ferredoxin related-protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122614|gb|ABJ80507.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116127471|gb|ABJ77563.1| Ferredoxin related-protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 397

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV +C +T C  +G   LI   R+ I +              +  C G C   P +++  
Sbjct: 306 HVYICESTNCASKGSISLIHRIRSCIKKHGKQT----DFRVSKSSCLGRCGEGPTLVVYP 361

Query: 153 GKDTYEDLTPERLEEII 169
               Y+ +     EEI+
Sbjct: 362 DGIWYQRVNENDAEEIV 378


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C   G +K+ E    +I +  L       +   +  C G C   P++++
Sbjct: 3   RSHVLVCGGTGCTSSGSQKIRERLEAEIKRNGLED----EVGVVKTGCFGLCALGPIMIV 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179
                 Y  +  E + EI+ +    G+  T
Sbjct: 59  YPEGSFYAMVKEEDIPEIVSEHLLKGRVVT 88


>gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina]
          Length = 536

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 23/115 (20%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           ++ +  G    V+VC    C   G   + +    ++               + V C G C
Sbjct: 13  YREAEAGVDREVRVCLAASCQSSGAVPVFDALVAELG----DTKPSCK--VKGVGCMGLC 66

Query: 145 VNAPMVMIGKD--------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
              P+V +            Y D+T +  E+I+ +           GP ++R+  
Sbjct: 67  SAGPLVAVADREADLQGSVLYRDVTADDAEDIVASID---------GPPVERLRC 112


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+ V VCG T C     EK+I   + ++ +K    +    +      C G C   P++++
Sbjct: 36  RSQVLVCGGTGCTSSNAEKIISTLKEEL-EKQGLTDE---VQVVRTGCFGLCALGPIMIV 91

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTG 175
                 Y  +  E + EI++     G
Sbjct: 92  YPEGSFYSMVKVEDIPEIVEQHLKNG 117


>gi|75910163|ref|YP_324459.1| hypothetical protein Ava_3959 [Anabaena variabilis ATCC 29413]
 gi|75703888|gb|ABA23564.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 188

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P    A + VC  + C+ RG E L+      +            ++ E   CQ  C +AP
Sbjct: 96  PSPPPAKIMVCQKSGCVKRGGEGLLSELEKTL-CDRGLL---DKVTIEHTGCQKRCSSAP 151

Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFSTGQGD 178
             ++M+GK  Y+ + PE +  +++ + T    
Sbjct: 152 NCVLMLGKKKYKKIHPEAIASLLENYLTADHP 183


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R HV VCG T C   G +K+IE    +I +  L       +   +  C G C   P++++
Sbjct: 34  RKHVLVCGGTGCTSSGSKKIIEKLHEEIRKNSLE----NEIGVVKTGCFGLCALGPIMIV 89

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  +  E + EI+ +    G+
Sbjct: 90  YPEGAFYSMVKEEDIPEIVSEHLLNGR 116


>gi|284052538|ref|ZP_06382748.1| hypothetical protein AplaP_13803 [Arthrospira platensis str.
           Paraca]
 gi|291568977|dbj|BAI91249.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 190

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   +  + +C  + C  RG + + +V    +  + LH      +  E+  C   C   
Sbjct: 104 QPKPAK--ILICQKSDCRKRGGQAVCQVLEQALCDRGLHD----QVKIEKTGCLKKCKLG 157

Query: 148 P--MVMIGKDTYEDLTPERLEEIIDAFST 174
           P  + M  K  Y  + P  + E+I+    
Sbjct: 158 PNLVFMPDKAHYTRVKPSDISEVIEKHLA 186


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 15/100 (15%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPL-----HR--NSDGTLSWEEVE 139
            R  V +C  T C+  G   + +  + +     ++                  ++ +   
Sbjct: 20  QRRQVLICAGTGCIAGGSLNIYDRLKEECQRRGLNVHVGLLREDETPETKSDDINLKRSG 79

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           C G C   P++ I      Y  +  E  ++II+     G+
Sbjct: 80  CHGFCEMGPLLQIEPDGILYTHVQVEDCDDIIEQTLLRGK 119


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            +       + +C  T C+  G  K+ +  +++I  + L     GT+S +   CQG C  
Sbjct: 25  QAKKTENKVITICCGTGCLAYGASKIGQSFKDEIKNQGLE----GTVSVKFTGCQGFCER 80

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P+V+I      Y+ + PE +  I+  
Sbjct: 81  GPLVVIRPENILYQRVKPEDVSRIVTE 107


>gi|296126169|ref|YP_003633421.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family,
           DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
           [Brachyspira murdochii DSM 12563]
 gi|296017985|gb|ADG71222.1| TRX Fd NuoE, TRX-like (2Fe-2S) ferredoxin (Fd) family,
           DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
           [Brachyspira murdochii DSM 12563]
          Length = 89

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  ++VC    C ++G   L+E  R+    +    +SDG L  +E+EC   C NA  V+I
Sbjct: 6   KTVIEVCVGLHCSMKGSYALLEAIRSHYDLQIGVPSSDGML-LKEMECMHNCHNAVPVLI 64

Query: 153 GKDTYEDLTPERLEEIIDA 171
                   + + + + I+A
Sbjct: 65  NGTECTKSSFKSVVKYIEA 83


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--- 152
           V VC  T C   G  ++       + +K L     G +   +  C G C   P+V+I   
Sbjct: 7   VLVCSGTSCFSSGGPEIYNNLLENLEEKGLT----GEVKLVQTGCFGFCEKGPIVVIYQE 62

Query: 153 ---GKDTYEDLTPERLEEIIDA 171
              G   Y  + PE  + I++ 
Sbjct: 63  DNPGGIFYCQVEPEDAQRIVEE 84


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + +C  T C   G  KL++  RN++ ++ L    D  +  +E  C G C    +V+I
Sbjct: 26  RLCITICCGTGCRALGSVKLVDAFRNELAKQEL----DNQVDIKETGCHGFCEKGSVVVI 81

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
                 Y  + PE   +I+D        TI+ G  ++R + + PA G
Sbjct: 82  YPQNICYFHVKPEDAADIVDK-------TIKNGALVERLLYTDPATG 121


>gi|188585465|ref|YP_001917010.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350152|gb|ACB84422.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 77

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  + C L+G   +I     K+ +K L       +  +   C G C  A  V +  
Sbjct: 2   IINVCVGSACHLKGAYDVINSIEKKLEEKNLTD----KVELKAAFCLGECTKAVSVKVDD 57

Query: 155 DTYEDLTPERLEEIIDA 171
                L  E +E+ I+ 
Sbjct: 58  GPVHSLALEDVEDFIEK 74


>gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142]
 gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142]
          Length = 545

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           ++ C  + C+  G E + +   N I +  L +     +    V C G C   P + I  +
Sbjct: 34  IRCCIASGCLSCGAESVKKSLDNAIKEAHLEQ----EVEVLGVGCMGICGRGPSIEIDPE 89

Query: 156 T--YEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
           T  Y ++T E +  II + +  +     P PQ D
Sbjct: 90  TTLYHNVTLENIPAIITSLNQTKTSENLP-PQGD 122


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C+  G + + +    ++  K      D  +   E  C GAC   P+ +I  
Sbjct: 7   TILICAGGACISAGEKSVKDAFEEELR-KYG---LDEVVRVIETGCMGACTLGPIAVIYP 62

Query: 153 GKDTYEDLTPERLEEIIDA------------FSTGQGDTIRPGPQID 187
               Y+ LTP+   EI++             +   +G   +P P++ 
Sbjct: 63  ESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEG---KPVPRVH 106


>gi|326789577|ref|YP_004307398.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
 gi|326540341|gb|ADZ82200.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
          Length = 102

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHRNSD----GTLSWEEVECQGACV 145
            + HV +C  T C + G +K     +N I    + +    D    G +      C G C 
Sbjct: 4   PKYHVFIC--TSCRINGQQKGFCHSKNSIGIVERFMEEIEDRGLSGDVVINNTGCFGICD 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P+V++      Y +++ E +E I++ 
Sbjct: 62  KGPIVVVYPEGAWYGNVSEEDVERIVEE 89


>gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
 gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
          Length = 645

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   +  V+VC  T C  +G  ++++   + + +  +     G +      C   C  +P
Sbjct: 565 PSEEKRTVKVCLGTSCYTKGSYEILKKLVDYVKENDME----GKIEVLGTFCVENCGASP 620

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFST 174
            V++      + T E++   ++  S 
Sbjct: 621 NVVVDGKILSEATFEKV---LEELSK 643


>gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
 gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
          Length = 537

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H  VC  T C+  G         ++   K         +   E  C G+C   P +++
Sbjct: 5   RIHALVCAGTQCLAAGGNSFKNALEDE--IKKHDLT--NEVIVVETGCMGSCQLGPRMVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  L PE  +EI++ 
Sbjct: 61  YPEGIMYTKLKPEDGKEIVEE 81


>gi|167816879|ref|ZP_02448559.1| NAD-dependent formate dehydrogenase gamma subunit [Burkholderia
           pseudomallei 91]
          Length = 65

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 114 EVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
              + +   +    + D  ++ E V C G C  +P + I  + +  ++P R + + DA
Sbjct: 1   AHAQARAGCRIDGGHGD-RVALESVYCLGLCAQSPSLTINDEPHAKMSPARFDALFDA 57


>gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
 gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
          Length = 535

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  ++ C    C+  G + ++   +  I +  L       +    V C   C   P+V 
Sbjct: 20  PRKQLRCCTAAGCLSSGSQAVLNRLKTAIKEGNLE----NEVEISSVGCLRLCSQGPLVE 75

Query: 152 IGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
           I  D   Y+ +TPE+   IID  +  +     P
Sbjct: 76  IDPDKTLYQQVTPEQALAIIDTLNGVEPSQELP 108


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + +C  + C+  G  K+ E   N +  K    N    ++  E  C G C   P+++
Sbjct: 4   KRIDLLICCGSGCVSAGALKVKEQFHNVLKTK-GLTNE---INIIETGCMGPCDYGPVIV 59

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           I      Y+ +TP+ +EEI++ 
Sbjct: 60  IYPEGVFYKKVTPDDVEEIVNE 81


>gi|257055782|ref|YP_003133614.1| ferredoxin [Saccharomonospora viridis DSM 43017]
 gi|256585654|gb|ACU96787.1| ferredoxin [Saccharomonospora viridis DSM 43017]
          Length = 217

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   R H+ VC    C  RG +         +  +    + D  ++  +  C   C + 
Sbjct: 111 RPPAYRHHLLVCRGPRCSARGADATYRTLVRTL-VRHGLTDEDVLVA--QTGCLFPCNHG 167

Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179
           P+ ++      Y  + P   E ++ +  + GQ  T
Sbjct: 168 PVAVVHPEGVWYGPMHPADTERLVREHLTDGQPLT 202


>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 599

 Score = 54.7 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V +C    C+  G + +  +    +       + D  +   E  C GAC   PM++I  
Sbjct: 7   TVLICAGGACISAGEKSVKGIFEETLR----KYSLDNVVRVVETGCMGACDLGPMLVIYP 62

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y+ +TPE    I++ 
Sbjct: 63  EGVFYQKITPENASRIVEE 81


>gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
 gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
          Length = 666

 Score = 54.7 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   +  V+VC  T C L+G  K++      + ++   +N    +      C   C NAP
Sbjct: 575 PEEEKVKVRVCLGTSCYLKGSYKILSDLIEIVRKEEWAKN----IEVVGTFCTENCSNAP 630

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            V+I           +++E++  +   + + + 
Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQEGVS 663


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGT--LSW 135
           Y +      G    + VCG T C+  G   + E  +  +H+K L+ +     +G   +  
Sbjct: 12  YDELSKMVQGYHMRILVCGGTGCIANGSLDVYEKFKEILHKKGLYTDLKLIQEGKEGVGI 71

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
               C G C   P+V I      Y  +  E +EEI+++
Sbjct: 72  SSSGCHGFCEMGPLVRIEPEGYLYVKVKAEDVEEIVES 109


>gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
 gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
          Length = 543

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             V  C +T C      ++++  +  I  K L       +    V C G C   P+V + 
Sbjct: 20  VRVHCCTSTGCRAANSLEVLQQLQEGITAKGLGD----RVEAVGVGCMGFCGRGPLVQVE 75

Query: 154 --KDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                YE++ P+    II A   G+   ++
Sbjct: 76  PAGILYEEVKPDEAPSIITALEGGKAKALQ 105


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
                 +  V VC    C+  G + +++  ++++         D  ++  +  C G C  
Sbjct: 18  TKERNYKKQVLVCCGVNCLTSGNDIILDKFQSRMK----EMRLDNEINVTKTGCFGFCAR 73

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P+V I   K  Y ++T + +++IID 
Sbjct: 74  GPIVEILPDKIFYTEITLDDVDKIIDK 100


>gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
 gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
          Length = 535

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  ++ C    C+  G + ++   +  I +  L       +    V C   C   P+V 
Sbjct: 20  PRKQLRCCTAAGCLSSGSQAVLNRLKTAIKEGNLE----NQVEISSVGCLRLCSQGPLVE 75

Query: 152 IGKD--TYEDLTPERLEEIIDAFSTGQGDTIRP 182
           I  D   Y+ +TPE+   IID  +  +     P
Sbjct: 76  IDPDKTLYQQVTPEQALAIIDTLNGVEPRQELP 108


>gi|292493993|ref|YP_003533135.1| colbalt chelase thioredoxin [Haloferax volcanii DS2]
 gi|291369163|gb|ADE01393.1| colbalt chelase thioredoxin [Haloferax volcanii DS2]
          Length = 406

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R     +      D  +      C G C + P+V +  
Sbjct: 317 HVAVCTNQTCAASGAATVLEQLRQ--GVRDA---DDCDVHVSRSSCLGQCGDGPIVAVYP 371

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +TP+  + I+ +
Sbjct: 372 DSVWYGGVTPDDTDRIVSS 390


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+  + VC    C+  G  ++I   + ++            ++ +   C G C   P+VM
Sbjct: 24  TKPCISVCAGAGCLASGAAEVIAAFKTELEFH-GLTTE---VNTKGTGCPGFCERGPIVM 79

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA-PAGGLTSLLDNNSK 206
           I      Y  + PE + EI+         TI+    +DR+    PA G  +L +++  
Sbjct: 80  IYPEGICYLKVKPEDVPEIV-------SHTIKEKKVVDRLLYEDPATGTRALRESDIP 130


>gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 623

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + +C  T C   G +K+ +    ++ +  L       +      C G C   P+V+
Sbjct: 29  QKTVIAICCGTGCQAYGAKKVADAFEEELSKAGLGD----KVEVRTTGCHGFCERGPLVV 84

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           I      Y+ L    + EII+ 
Sbjct: 85  IRPQNIFYQRLKISDIPEIIEK 106


>gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
          Length = 650

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    V +C  T C   G  +LI++ R ++  + L    D  +      C G C   P++
Sbjct: 56  GGMRQVLICTGTGCASSGSNRLIDLIREELAAQGL----DEHIQVRSTGCHGFCEQGPIL 111

Query: 151 MI--GKDTYEDLTPERLEEIIDA 171
           +I   K  Y  + P  + EI+  
Sbjct: 112 IIEPDKTFYTKVKPSDIPEIVAR 134


>gi|152982584|ref|YP_001354936.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille]
 gi|151282661|gb|ABR91071.1| ferredoxin 2fe-2s protein [Janthinobacterium sp. Marseille]
          Length = 106

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+ +C          C  RG     +  + +   K L  +  G +   +  C G C   P
Sbjct: 11  HLFICMNQRDDGRECCAERGAHAAQKHLKAR--VKELGLSRSGEVRVNQSGCLGRCEEGP 68

Query: 149 MVMI--GKDTYEDLTPERLEEIID 170
           +++I      Y  +  E L+EIID
Sbjct: 69  VIVIYPQGTWYTYVDNEDLDEIID 92


>gi|56420345|ref|YP_147663.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
 gi|56380187|dbj|BAD76095.1| cobalamin biosynthesis protein [Geobacillus kaustophilus HTA426]
          Length = 132

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145
            G + HV +C    C+  G + +    R +   +      H             C G C 
Sbjct: 7   RGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +A ++++      Y  +TPER +E++ A   G+G  +R
Sbjct: 59  DACVMIVYPQGIWYRQMTPERAKEVVRAH-LGEGVPMR 95


>gi|218442113|ref|YP_002380442.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
           PCC 7424]
 gi|218174841|gb|ACK73574.1| iron-sulfur cluster-binding protein like protein [Cyanothece sp.
           PCC 7424]
          Length = 193

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VC  + C  +G + + +     +  +         +  +   C   C   P +++   
Sbjct: 114 ILVCQKSDCWKKGGKAMCQAIETCL--RDNGLTD--KVQVKLTGCLKRCSKGPNMVVLPD 169

Query: 154 KDTYEDLTPERLEEIIDAFST 174
           K  Y  + P+ +  +++    
Sbjct: 170 KTNYTRVRPDEIPILLEKHFA 190


>gi|307153358|ref|YP_003888742.1| hypothetical protein Cyan7822_3525 [Cyanothece sp. PCC 7822]
 gi|306983586|gb|ADN15467.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 194

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VC  + C  +G + + +   + +    L       +  +   C   C   P ++I   
Sbjct: 114 ILVCQKSDCWKKGGKDMCQAIESCLKDNGLED----QVQVKRTGCLKRCSKGPNMIILPD 169

Query: 154 KDTYEDLTPERLEEIIDA 171
           K  Y  + P+ +  +++ 
Sbjct: 170 KANYTRVKPQEIPVLLEK 187


>gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 574

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             S  G R ++ VCG T C+    +K+++     +  +     +D  +      C G C 
Sbjct: 24  HRSAPGPRMNIMVCGGTGCLSSDSDKVVKNLELILKARGY---AD-EVKVVRTGCFGFCE 79

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             P+V I      Y  ++P+  ++I+D     +G+++ 
Sbjct: 80  QGPIVKIEPDNVFYVRVSPKDAKDIVDEHVA-KGNSVE 116


>gi|297539794|ref|YP_003675563.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301]
 gi|297259141|gb|ADI30986.1| putative ferredoxin 2Fe-2S protein [Methylotenera sp. 301]
          Length = 103

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 94  AHVQVC-----GTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C       T C + +G E   +  +++   K L  + +G +      C   C   
Sbjct: 7   HHVFFCLNQRADGTACCMDKGAEAAFDHMKSR--VKKLGLSGEGKVRINRAGCLDRCGEG 64

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P+++I      Y  +  E ++EII++
Sbjct: 65  PLLVIYPQAIWYTFVDNEDIDEIIES 90


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL----HRNSDGTLS-WEEVECQGACVNAPM 149
            + VCG T C+  G  +++E  + ++  K L            +   +  CQG C   P+
Sbjct: 23  RIIVCGGTGCIAGGSLEVLEAFKKELSAKGLNVCTQITDGCRGTYLSKSGCQGFCAAGPL 82

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           V +G   Y  +    + EI++ 
Sbjct: 83  VSVGDIFYTKVKESDVSEIVEK 104


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV +C  T C+  G +K+    R ++         D  +   E  C G C   P+V++
Sbjct: 5   RAHVLICAGTGCVSSGSKKVEAALRAELA----RTGLDKEVKVVETGCHGFCEMGPIVIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +    + E++++
Sbjct: 61  YPEGVFYCRVQESDVPELVES 81


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + VC  T C   G  K+ +     I            D   + ++  C G C   P+V 
Sbjct: 27  KIYVCVGTGCTANGSRKVYKKFVEVITNKGLDVKVEAEDEHPTVKKTGCCGLCSLGPLVK 86

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           I     TY  +T + +EEI++ 
Sbjct: 87  ITPEGITYHHVTVDDVEEIVEK 108


>gi|150020393|ref|YP_001305747.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermosipho melanesiensis BI429]
 gi|149792914|gb|ABR30362.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermosipho melanesiensis BI429]
          Length = 74

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C  + C L+G   +++  +  +  K L              C G C +   + I  
Sbjct: 2   RIRICMGSSCHLKGAYDVVKKIKE-LDIKNLK--------LYGSLCFGKCESGINIEIDG 52

Query: 155 DTYEDLTPERLEEIIDAF 172
           +    ++PE ++EI+  F
Sbjct: 53  ELVSHVSPENVQEIVKKF 70


>gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
          Length = 534

 Score = 54.4 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 18/111 (16%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  +A + ++A                    T+  ++ C    CM  G   + E    +I
Sbjct: 1   MTDLAELFEIAEAE-------------QDSHTKIQIRCCTAAGCMSSGSLAVKEELEKQI 47

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT-YEDLTPERLEEIID 170
            +K L       L    V C   C  AP+V +  +T ++ + PE   EI+D
Sbjct: 48  KEKNLGD----RLEVVPVGCMKLCGFAPLVDVSDETCFQQVMPEVAPEIVD 94


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C      K++E  + +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSYKIVENLKEEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  +TPE  +EI +     G+
Sbjct: 99  NVFYVKVTPEDAKEIAEKHLLKGE 122


>gi|225568914|ref|ZP_03777939.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM
           15053]
 gi|225162413|gb|EEG75032.1| hypothetical protein CLOHYLEM_04993 [Clostridium hylemonae DSM
           15053]
          Length = 81

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            VQ+C  + C LRG E +++     + ++ L       +      C GAC     V IG+
Sbjct: 2   KVQICIGSSCHLRGSETIVKTFNRLLKEEKLE----AQVELCGSFCMGACSKGVSVKIGE 57

Query: 155 DTYEDLTPERLEE 167
           + Y  + PE  E+
Sbjct: 58  NIY-HVKPEDAED 69


>gi|297530030|ref|YP_003671305.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3]
 gi|297253282|gb|ADI26728.1| cobalamin biosynthesis protein [Geobacillus sp. C56-T3]
          Length = 132

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPL-HRNSDGTLSWEEVECQGACV 145
            G + HV +C    C+  G + +    R +   +      H             C G C 
Sbjct: 7   RGMKHHVLICNGGTCLRHGGDDVTMAVREEIARLGLDDAVHTT--------RTRCNGRCQ 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
           +A ++++      Y  +TPER +E++ A
Sbjct: 59  DACVMIVYPQGVWYRQMTPERAKEVVRA 86


>gi|167770145|ref|ZP_02442198.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM
           17241]
 gi|167667467|gb|EDS11597.1| hypothetical protein ANACOL_01488 [Anaerotruncus colihominis DSM
           17241]
          Length = 83

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V VC  + C L+G   +I V + +I Q+ L       ++     C G C N   + I   
Sbjct: 3   VYVCIGSSCHLKGSYDIINVFKQQIAQQHLED----KVNLNASFCLGHCQNGVTIKIDDR 58

Query: 156 TYEDLTPERL-----EEIIDAFST 174
               L  E       +E+++    
Sbjct: 59  LVTGLNAENAAEVFQKEVVEGLKE 82


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +R  + VC  T C   G  KL++  R+++ ++ L       +  +E  C G C    +V+
Sbjct: 24  SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
           I      Y  + PE   ++I+        TI+ G  ++R + + PA G
Sbjct: 80  IYPQNICYFHVKPEDAADVIEK-------TIKTGELVERLLYADPATG 120


>gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
 gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
          Length = 671

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V+VC  T C LRG +K+       +H     +  D     +   C   C   P V 
Sbjct: 587 DRIPVKVCVGTSCFLRGSQKV---LSKLLHAVEEEK-LDRFYEVQATFCSEQCDKGPTVH 642

Query: 152 IGKDTYEDLTPERLEEIIDAFST 174
           IG         +++ E++     
Sbjct: 643 IGDRVINRADGDQIVELLREMVA 665


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +R  + VC  T C   G  KL++  R+++ ++ L       +  +E  C G C    +V+
Sbjct: 24  SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
           I      Y  + PE   ++I+        TI+ G  ++R + + PA G
Sbjct: 80  IYPQNICYFHVKPEDAADVIEK-------TIKTGELVERLLYADPATG 120


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             V +C    C+  G E + +   ++   +    +    +   E  C GAC   P+++I 
Sbjct: 6   TTVLICAGGACISAGEESVKQALESE--IEKYALSE--VVRVVETGCMGACSLGPLMVIY 61

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y+ LTP+    I++ 
Sbjct: 62  PEGVFYQKLTPQAARRIVEE 81


>gi|154249016|ref|YP_001409841.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Fervidobacterium nodosum Rt17-B1]
 gi|154152952|gb|ABS60184.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Fervidobacterium nodosum Rt17-B1]
          Length = 96

 Score = 54.0 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
              +  V +C  + C L+G   + E  +  I +  L  +    +  +   C G CVN   
Sbjct: 8   KNEKFVVSICFGSSCHLKGSYSIAERLKEFIEKNKLENS----VELKGSLCLGMCVNGVN 63

Query: 150 VMIGKDTYEDLTPERLEEIIDAFS 173
           ++I      ++  E +E + +   
Sbjct: 64  ILIDDKLLSNINCENIEVVYEYLR 87


>gi|326314920|ref|YP_004232592.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323371756|gb|ADX44025.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 131

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 93  RAHVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149
           R H+ +C    C   G  + L +    K     L+   DG L  +   V C  AC   P+
Sbjct: 31  RRHLLICTGPRCAQEGQAQALFDSLGEKFKAAGLN---DGELRVKRSRVSCFAACKGGPV 87

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175
           + +      Y D+TP+ ++ II+    G
Sbjct: 88  MCVQPDGTWYYDVTPDNMDRIIEQHLVG 115


>gi|153005413|ref|YP_001379738.1| ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028986|gb|ABS26754.1| Ferredoxin-like protein [Anaeromyxobacter sp. Fw109-5]
          Length = 134

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 21/121 (17%)

Query: 93  RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV VC            C  +G   + +  ++++ ++ L    D  +      C  AC
Sbjct: 13  RHHVFVCENVRPEDDPRGSCGGKGSSAIRKALKDELKRRGL----DKQIRANAAGCLDAC 68

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR------PGPQIDRISS-APAG 195
              P +++      Y  ++   + EI++    G     R       G    R S+ AP G
Sbjct: 69  AFGPSMVVYPEGVWYGHVSVADVPEIVERHLVGGEPVERLRLRRLEGAPATRASAIAPDG 128

Query: 196 G 196
           G
Sbjct: 129 G 129


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

Query: 57  SRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVC 116
               +  +   L +               +      +  + VC  T C   G  K+    
Sbjct: 12  PADLLRYI-EELKI---------------KREKKLQKTSIYVCVGTGCTASGSRKVYAKF 55

Query: 117 RNKIHQKPLHRN----SDGTLSWEEVECQGACVNAPMV--MIGKDTYEDLTPERLEEIID 170
              I+QK L  N     D     ++  C G C   P+V  M    TY  ++   +EEI++
Sbjct: 56  VEVINQKGLDVNIEKIDDDDTPVKKTGCCGLCSLGPLVKIMPYGITYSHVSVNDVEEIVE 115

Query: 171 A-FSTGQG 177
                G+ 
Sbjct: 116 RTLMKGEA 123


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            RAH+ +C    C+  G E        ++            +   E  C G C   P++ 
Sbjct: 3   ERAHILICAGAACISAGEESFKSALERELK----EAGIYDEVKVIETGCFGTCDLGPVMA 58

Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176
           I      Y  L P+  ++I+ +    G+
Sbjct: 59  IYPEGTFYIRLKPQDAKDIVHEHLLKGR 86


>gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110]
 gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110]
          Length = 535

 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V+ C    C+  G + ++E        K  +   +  ++   V C   C   P++ 
Sbjct: 20  KRKRVRCCTAAGCLSSGSKAIVEKLS--TAVKSANLTEEIEIT--PVGCLRLCGQGPLIY 75

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           I      Y+ + PE+ E IID+ +  +     P
Sbjct: 76  IDPDDTLYQQIKPEQAEAIIDSLNGQEQPENLP 108


>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 603

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
                   V VC  T C  +  + L +   +++         D  +  +   C G C   
Sbjct: 9   KKPAKERQVLVCRGTGCESQKAKILFDNLEHELKM----LGLDDDIEVKFTGCHGFCQQG 64

Query: 148 PM--VMIGKDTYEDLTPERLEEIID 170
           P   VM     Y ++ PE  +EI+ 
Sbjct: 65  PTVIVMPAGTFYCNVQPEDADEIVK 89


>gi|120608788|ref|YP_968466.1| hypothetical protein Aave_0078 [Acidovorax citrulli AAC00-1]
 gi|120587252|gb|ABM30692.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 130

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEE--VECQGACVNAPM 149
           R H+ +C    C   G     +   + + +K      +DG L  +   V C  AC   P+
Sbjct: 30  RRHILICTGPRCAQEGQ---AQALFDSLGEKFKAAGLNDGDLRVKRSRVSCFAACKGGPV 86

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQID 187
           + +      Y D+TP  ++ II+    G    +      GP   
Sbjct: 87  MCVQPDGTWYYDVTPANMDRIIEQHLVGGQPVEDLVFHQGPTGG 130


>gi|303239674|ref|ZP_07326199.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302592845|gb|EFL62568.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 107

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 85  FQLSPVGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
             L     + HV VC ++         C  +    +I+    +   +      +  ++  
Sbjct: 1   MNLVMRKPKYHVFVCTSSRINGQQKGYCFSKDAVSIIQRFMEE--IEANELTDEVMVT-- 56

Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIID 170
              C G C + P+V++      Y+++TP+ + EI++
Sbjct: 57  NTGCFGICSSGPVVVVYPEGVWYKEVTPDDVSEIVE 92


>gi|317133834|ref|YP_004089745.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7]
 gi|315450296|gb|ADU23859.1| hypothetical protein Rumal_3403 [Ruminococcus albus 7]
          Length = 79

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVC-----RNKIH--QKPLHRNSDGTLSWEEVECQGACVNA 147
            V VC  + C L+G  +++E         K+    K                C G C   
Sbjct: 2   KVTVCIGSSCHLKGSRQVVEQLQYLIAEEKLGDKIKLGGT-----------FCMGKCQQG 50

Query: 148 PMVMIGKDTYEDLTPERLEEIIDA 171
             V +    Y  +TPE + E  + 
Sbjct: 51  VCVTVDDVFYS-VTPETVGEFFEK 73


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + +CG T C   G EK+ +    +I ++ L   +D  +      C G C   P++++
Sbjct: 5   RTQLMLCGGTGCDSTGSEKVRQALVREIERQGL---AD-EVEIVVTGCNGFCAVGPVMVV 60

Query: 153 G--KDTYEDLTPERLEEIIDA 171
                 Y+ + PE   E+++ 
Sbjct: 61  QPEGIFYQKIQPEDAPELVEE 81


>gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5]
 gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5]
          Length = 1042

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  V VCG   C+   C+++ +     +    L       +      C G C   P++++
Sbjct: 35  RRQVLVCGGAGCISSHCQEVKDALYESLANYQLKD----EVEVLVTGCMGTCSLGPVILV 90

Query: 153 --GKDTYEDLTPERLEEII 169
                 Y  + PE+++ I+
Sbjct: 91  EPDGVFYTQMEPEKVDHIV 109


>gi|225620389|ref|YP_002721646.1| NADH:ubiquinone oxidoreductase (Nuo) subunit E family protein
           [Brachyspira hyodysenteriae WA1]
 gi|225215208|gb|ACN83942.1| TRX Fd NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family,
           DH:ubiquinone oxidoreductase (Nuo) subunit E subfamily
           [Brachyspira hyodysenteriae WA1]
          Length = 89

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  ++VC    C ++G   L+E  R+    +    +SDG L  +E+EC   C NA  V+I
Sbjct: 6   KTVIEVCVGLHCSMKGAYSLLESIRSHYDLEIGVPSSDGML-LKEMECMHNCHNAVPVLI 64

Query: 153 GKDTYEDLTPERLEEIID 170
                   T    + II 
Sbjct: 65  NGMEC---TKSSFKSIIK 79


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score = 53.6 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            RAH+ +C    C+  G E        ++            +   E  C G C   P++ 
Sbjct: 3   ERAHILICAGAACISAGEESFKSALERELK----EAGIYDEVKIIETGCFGTCDLGPVMA 58

Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176
           I      Y  L P+  ++I+ +    G+
Sbjct: 59  IYPEGTFYIRLKPQDAKDIVHEHLLKGR 86


>gi|307688103|ref|ZP_07630549.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 102

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIH--------QKPLHRNSDGTLSWEEVECQGAC 144
           + H+ VC  T C + G +K     ++ +               +S+  ++     C G C
Sbjct: 5   KHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMIT--NTGCFGIC 60

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P+V++      Y ++T + + EI+++     G+ ++
Sbjct: 61  AQGPVVVVYPEGVWYGNVTEDDVAEIVESHIE-NGEVVK 98


>gi|302875665|ref|YP_003844298.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
 gi|302578522|gb|ADL52534.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           cellulovorans 743B]
          Length = 103

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIH--------QKPLHRNSDGTLSWEEVECQGAC 144
           + H+ VC  T C + G +K     ++ +               +S+  ++     C G C
Sbjct: 6   KHHIFVC--TSCRINGQQKGFCFSKDSVGVVEAFIEEINDRDLSSEVMIT--NTGCFGIC 61

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P+V++      Y ++T + + EI+++     G+ ++
Sbjct: 62  AQGPVVVVYPEGVWYGNVTEDDVAEIVESHIE-NGEVVK 99


>gi|302337815|ref|YP_003803021.1| hypothetical protein Spirs_1300 [Spirochaeta smaragdinae DSM 11293]
 gi|301635000|gb|ADK80427.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 83

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C  + C +RG   L+      +  + L   SD  ++ +   C   C   P V+I  
Sbjct: 2   TIEICMGSSCYVRGNRDLLAALEQFLETEGL---SD-RVALKGCLCTDCCGQGPNVIIDG 57

Query: 155 DTYEDLTPERLEEII 169
           + Y +  P  + +++
Sbjct: 58  EIYHEAAPGSIIDLL 72


>gi|119942|sp|P07324|FER2_CLOPA RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=2FeCpFd
 gi|40563|emb|CAA79492.1| [2Fe-2S] ferredoxin [Clostridium pasteurianum]
          Length = 102

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 90  VGTRAHVQVCGTTPCMLRG----------CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           V  + H+ VC  T C L G            +++E    ++  + L       +      
Sbjct: 2   VNPKHHIFVC--TSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSS----EVMVNNTG 55

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           C G C   P+V++      Y ++T + +EEI+++     G+ ++
Sbjct: 56  CFGICSQGPIVVVYPEGVWYGNVTADDVEEIVESHIE-NGEVVK 98


>gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
 gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
          Length = 528

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++ C +  C+ RG   L+                   +    V C G C   P   +   
Sbjct: 4   LRCCASAGCLARGSGALMGALE--TAISRGELGD--RIQLRPVGCLGPCSQGPLLALDPD 59

Query: 154 KDTYEDLTPERLEEIIDAFS--------TGQGDTIRPGPQIDRI--SSAP 193
            D Y  + P+  E ++ A +        + Q   ++  P        S P
Sbjct: 60  GDLYAGVDPQDAETLVAALARRQHQDCDSAQAPPLKWTPARGERLDLSEP 109


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V +C  T C+  G  K+ E  R ++  K         +      C G C   P+V+I  
Sbjct: 3   KVLICAGTGCISSGSPKVTEKFREELS-KRGIT----DIEVYNTGCHGFCEQGPIVIIEP 57

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRI 189
            K  Y  +  + + EII+    G     +     PQ+D+ 
Sbjct: 58  DKTFYCRVEVDDVPEIIEKHLLGGQIVEKVLFHEPQVDKK 97


>gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120]
 gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120]
          Length = 544

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             ++ C    C+    + + +     +  + L     G +    V C   C   P+V + 
Sbjct: 20  VQIRCCTAAGCLSANSQAVQQQLEQAVKAEGLE----GEVQVSGVGCMRLCCQGPLVEVE 75

Query: 154 K--------DTYEDLTPERLEEIIDAFSTGQGD 178
                      YE +TPE    II A    +  
Sbjct: 76  GSGEEKTKQRLYEKVTPEDASAIIGALKGKEAQ 108


>gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
 gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
          Length = 626

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             + +C  T C   G +K+ +    ++ +  L       +      C G C   P+V+I 
Sbjct: 34  TVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 89

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y+ L    + EII+ 
Sbjct: 90  PQNIFYQRLKISDIPEIIEK 109


>gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 84  QFQLSPVG--TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           Q +    G   +AH+ VCG   C+   C ++++  R  + +      SD  +      C 
Sbjct: 19  QIRYGKPGVLHKAHIMVCGGQGCISSKCAEVVDAIREALKKHNF---SD-HVKVVLTGCM 74

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEII 169
           G C   P+ ++      Y  L P+  E I+
Sbjct: 75  GPCDMGPVAVVFPDAVFYRRLKPKDAEAIV 104


>gi|254414361|ref|ZP_05028128.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179036|gb|EDX74033.1| hypothetical protein MC7420_5913 [Microcoleus chthonoplastes PCC
           7420]
          Length = 104

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           V VC    C   G   ++                D     +  +CQG C   P V +   
Sbjct: 13  VLVCQHRSCQAEGSADVLAAFE--------EVAKDTDFKIKGTDCQGQCSCGPTVRVVPE 64

Query: 154 KDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
           +  Y  + P  +  I++     G+    +  P+I 
Sbjct: 65  ETWYYRVQPSDVRRIVEQHLKEGKPVDEKLNPRIH 99


>gi|332527507|ref|ZP_08403559.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2]
 gi|332111914|gb|EGJ11892.1| ferredoxin-like protein [Rubrivivax benzoatilyticus JA2]
          Length = 108

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R H+  C          C   G ++  + C+ +   K       G +   +  C   C  
Sbjct: 5   RHHIFFCLNERPAGESSCARHGAQEAFDHCKAR--VKAEGLAGAGGVRVNKAGCLDRCAG 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG-DTIRPGPQIDR 188
            P+ ++      Y  +  E ++EI+++    G+  + +   P + R
Sbjct: 63  GPVAVVYPEGTWYTYVDREDIDEIVESHLKNGRPVERLMLPPDVGR 108


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +CG T C+  G +++ +  R ++    L       +   E  C G C   P+++I  
Sbjct: 24  RILICGGTGCVSSGSKEIQDELRKELEVNNLKS----EVKIVETGCHGFCEKGPIIIIYP 79

Query: 153 GKDTYEDLTPERLEEIID-AFSTGQ 176
            +  Y ++ PE ++E+++     G+
Sbjct: 80  EEVFYCEVDPEDIKELVEKQLLEGE 104


>gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
 gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
          Length = 538

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +  C +T C       + +     + +  L       +    V C G C   P+V I  
Sbjct: 21  RIHCCTSTGCQAANSLAVKKEMEQAVKKAGLQD----KVQVVGVGCMGFCGKGPIVEIEP 76

Query: 155 D--TYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
           +   YE + PE    I++  + G+       PQ
Sbjct: 77  EGLQYETVKPEVAASIVEGLNGGEVKATPGDPQ 109


>gi|330945791|gb|EGH47199.1| NADH dehydrogenase subunit E [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 56

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 11 FQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
           Q   F+ SE     +   +  Y   R  +A I  L   Q++ GWV   AI  
Sbjct: 6  IQTDRFALSETERSAIEHEMHHYEDPR--AASIEALKIVQKERGWVPDGAIYA 56


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E++I   R  +                   C G C   P+V MI  
Sbjct: 8   ILVCGGTGCRASRSEEIIAALRRAL----DRTGESERTRVIRTGCFGFCEQGPIVKMIPD 63

Query: 154 KDTYEDLTPERLEEII 169
              Y  + PE  EEI+
Sbjct: 64  NTFYVSVKPEDAEEIV 79


>gi|150391253|ref|YP_001321302.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF]
 gi|149951115|gb|ABR49643.1| ferredoxin, 2Fe-2S [Alkaliphilus metalliredigens QYMF]
          Length = 102

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 14/94 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C+ +G   ++     +I    + R  DG +      C G 
Sbjct: 4   PKHHIFVCSSSRINGEQKGFCLQKGAVDIVNSFMEEI----MERELDGDVMVTNTGCIGI 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V++      Y  +T + +EEI+D+   G
Sbjct: 60  CSKGPIVIVYPEGVWYGSVTADDVEEIMDSHIEG 93


>gi|218295408|ref|ZP_03496221.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus
           aquaticus Y51MC23]
 gi|218244040|gb|EED10566.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Thermus
           aquaticus Y51MC23]
          Length = 367

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145
             P G   H+ +C    C  RG   L+      +    P        +      C G C 
Sbjct: 271 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEDLRDLGP-------WVQLTPTPCLGRCG 323

Query: 146 NAPMVM--IGKDTYEDLTPERL 165
             P+++       Y  L+PE  
Sbjct: 324 KGPVLIAYPEGVVYGGLSPEDA 345


>gi|298490010|ref|YP_003720187.1| hypothetical protein Aazo_0568 ['Nostoc azollae' 0708]
 gi|298231928|gb|ADI63064.1| conserved hypothetical protein ['Nostoc azollae' 0708]
          Length = 194

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 87  LSPVG---TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           L P      +  +  C  + CM  G + + ++   ++  + L    D  ++ +   C   
Sbjct: 94  LKPKPEAAKKQTILFCQKSGCMKSGGKAVCQMLEKELSDRGL----DNKVNIKGTGCMKN 149

Query: 144 CVNAP-MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C   P +VM  K  Y  +   ++  +ID       +T  P
Sbjct: 150 CKAGPNLVMPDKTRYSRIQARQVPAVIDKHLGKNMETEVP 189


>gi|162457511|ref|YP_001619878.1| hypothetical protein sce9225 [Sorangium cellulosum 'So ce 56']
 gi|161168093|emb|CAN99398.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 127

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 89  PVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   R  + VC        P   C  RG E +    +  + ++ L +      S     C
Sbjct: 2   PQRKRY-LFVCVNRRPDGVPKGSCAQRGAEGIHVQLKAALAERGLAKVEARACS---ASC 57

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176
              C   P++ +      Y  +TP  + EI+DA ++G+
Sbjct: 58  LDVCWAGPVIAVEPDGYFYGRVTPADVPEIVDALASGR 95


>gi|261885720|ref|ZP_06009759.1| hydrogenosomal NADH dehydrogenase 24 kDa subunit [Campylobacter
          fetus subsp. venerealis str. Azul-94]
          Length = 78

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 15 SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           F F+ E    +NE+  +    R  + V+P L   Q  +G +    +  +   L +  + 
Sbjct: 2  KFEFTHEQLSALNELKKKVDDDR--ALVLPSLWMVQRAQGIIDAKDVLYLEKTLCIRSMF 59

Query: 75 VLEIATFYTQF 85
            E   FY+ F
Sbjct: 60 YAEAIGFYSMF 70


>gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
 gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
          Length = 538

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            Q++         V+VC    C   G   ++E  +             G+   + V C G
Sbjct: 11  AQYRNEDAHIEREVRVCVAASCQSSGSLPVLEALK-----SACDTQGAGSCKVKGVGCMG 65

Query: 143 ACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171
            C   P+V +            Y D+TP+   +I+ +
Sbjct: 66  LCSAGPLVAVADKDCALNESVLYRDVTPDDAPDIMAS 102


>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 774

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G +    VC   PC   G +++     ++  ++ +       +   +  CQG C   P++
Sbjct: 24  GAKVRASVCCGLPCTALGSQEIARELADESARQGIE------VDIVKTGCQGLCQKGPLM 77

Query: 151 MIG--KDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +      Y+ + PER  E+I   + G G  +R
Sbjct: 78  QVEPHGYFYQKVKPERAGEMISK-TMGSGQPVR 109


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           H+ +C  T C+     ++     ++I  + L       +      C G C   P++++  
Sbjct: 6   HILICRGTACVSSESIEVQRELEDQIKSRGLEE----QVRVVHTGCFGFCARGPVMVVLP 61

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y ++  E + EII++
Sbjct: 62  QGTLYCEVRVEDVGEIIES 80


>gi|50842146|ref|YP_055373.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes
           KPA171202]
 gi|289426196|ref|ZP_06427942.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289426919|ref|ZP_06428645.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|50839748|gb|AAT82415.1| conserved protein, putative NADH:ubiquinone oxidoreductase
           [Propionibacterium acnes KPA171202]
 gi|289153361|gb|EFD02076.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289160008|gb|EFD08186.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|313791559|gb|EFS39677.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313802354|gb|EFS43580.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808224|gb|EFS46698.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313812493|gb|EFS50207.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313818990|gb|EFS56704.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313820820|gb|EFS58534.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313822418|gb|EFS60132.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313825787|gb|EFS63501.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313839122|gb|EFS76836.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314925577|gb|EFS89408.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314959895|gb|EFT03997.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314962284|gb|EFT06385.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314979250|gb|EFT23344.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314986834|gb|EFT30926.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314989393|gb|EFT33484.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315077371|gb|EFT49431.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315083998|gb|EFT55974.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315085201|gb|EFT57177.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315089007|gb|EFT60983.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315107158|gb|EFT79134.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
 gi|327330958|gb|EGE72702.1| hypothetical protein HMPREF9337_01525 [Propionibacterium acnes
           HL096PA3]
 gi|327331165|gb|EGE72905.1| hypothetical protein HMPREF9344_01820 [Propionibacterium acnes
           HL097PA1]
 gi|327447449|gb|EGE94103.1| hypothetical protein HMPREF9568_00745 [Propionibacterium acnes
           HL013PA2]
 gi|327455220|gb|EGF01875.1| hypothetical protein HMPREF9584_01176 [Propionibacterium acnes
           HL092PA1]
 gi|328752943|gb|EGF66559.1| hypothetical protein HMPREF9563_02196 [Propionibacterium acnes
           HL020PA1]
 gi|332675071|gb|AEE71887.1| putative NADH:ubiquinone oxidoreductase [Propionibacterium acnes
           266]
          Length = 206

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+  C    C   G   L    ++K+         D  +      C   C +AP++++
Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHAPLIVV 179

Query: 153 --GKDTYEDLTPERLEEIIDAF 172
                    LT + L+ I++  
Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200


>gi|91788628|ref|YP_549580.1| hypothetical protein Bpro_2766 [Polaromonas sp. JS666]
 gi|91697853|gb|ABE44682.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 117

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 93  RAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149
           + H+ +C    C   G  ++L +   +K     LH   DG +  +   V C  AC   P+
Sbjct: 14  KRHLLICTGPRCTQDGASQELFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPV 70

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175
           + +      Y ++TP  ++ IID    G
Sbjct: 71  MCVQPDGTWYYNVTPANMDRIIDQHLVG 98


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VC  T C+  G + L  +   ++  K       G +   E  C G C   P++++
Sbjct: 7   RSHVLVCTGTGCVSSGAKDLKTILDEELAAKD----MSGEIKIVETGCHGFCEKGPIMIV 62

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y ++  + ++EI+D 
Sbjct: 63  YPEGVFYCEVNEKDVKEIVDE 83


>gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
 gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
          Length = 666

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   +  V++C  T C ++G  K++      + ++   +N    +      C   C NAP
Sbjct: 575 PEEEKIKVRICLGTSCYIKGSYKILSDLIEVVRKEDWAKN----VEVVGTFCTENCSNAP 630

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            V+I           +++E++  +   + + + 
Sbjct: 631 NVLIDDILISGADTNKVKEMLREYVRRKQEGVS 663


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMI 152
           H+ +CG   C     + +++    +     L+   D  +      C G C   P+  +M 
Sbjct: 39  HILICGGPGCKASNSDNILKAFNEE--ITRLNLQED--VKVIMTGCFGFCAKGPVIEIMP 94

Query: 153 GKDTYEDLTPERLEEIIDA 171
            K  Y  +T E ++EII++
Sbjct: 95  DKVFYIKVTEEDVKEIIES 113


>gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51
           kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G +  + +C TT C   G  ++ +  + +I  +    +    +   +  CQG C  AP+V
Sbjct: 26  GEKIRILIC-TTGCRALGAWEVYKTFQAEIEMQ----SLKDRVEVVDTGCQGLCTRAPVV 80

Query: 151 MIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
            +      Y  +T   + EI+         T+  G  I+R+     G       + S  +
Sbjct: 81  TVEPMGVFYGRVTESDVHEIVSR-------TVLKGEIIERLCCTEDGKRVPYRKDISFYK 133

Query: 209 GKKK 212
            +KK
Sbjct: 134 KQKK 137


>gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 623

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           A + +C  T C   G +K+ +    ++ +  L       +      C G C   P+V+I 
Sbjct: 31  AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 86

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y+ L    + EII+ 
Sbjct: 87  PQNIFYQRLKISDIPEIIEK 106


>gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 623

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           A + +C  T C   G +K+ +    ++ +  L       +      C G C   P+V+I 
Sbjct: 31  AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTTGCHGFCERGPLVVIR 86

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y+ L    + EII+ 
Sbjct: 87  PQNIFYQRLKISDIPEIIEK 106


>gi|86607084|ref|YP_475847.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86555626|gb|ABD00584.1| putative iron-sulfur cluster-binding protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 184

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148
           G +  V VC  + C  RG   +++  +  +   P        +  + V C   C   P  
Sbjct: 97  GRKGVVLVCQKSDCCRRGAMAVMQALQAHLAAYP-ET-----IRVQGVGCMKDCKRGPNV 150

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           + +  K  Y  ++P+ +  ++            P
Sbjct: 151 VFLPDKARYSGVSPQGIPALLQRHFPLADPVPSP 184


>gi|317132513|ref|YP_004091827.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3]
 gi|315470492|gb|ADU27096.1| ferredoxin, 2Fe-2S [Ethanoligenens harbinense YUAN-3]
          Length = 103

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 14/87 (16%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + HV VC +          C   G   ++   +            D  ++     C G C
Sbjct: 6   KHHVFVCTSCRQNGTQKGKCFANGANDVVMKFQEV--IDDEDIRDDVMVT--NCGCFGLC 61

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII 169
            N  +V +      Y+ +T + +EEI+
Sbjct: 62  DNGVVVAVYPDGVFYKHVTVDDVEEIV 88


>gi|225405725|ref|ZP_03760914.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme
           DSM 15981]
 gi|225042749|gb|EEG52995.1| hypothetical protein CLOSTASPAR_04946 [Clostridium asparagiforme
           DSM 15981]
          Length = 104

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +   +G +  +  C  + C L+G  ++IE  +  + Q  L     G +      C G C 
Sbjct: 20  KRRKLGMKVTI--CIGSACHLKGSREIIEKLQQLVAQNGL----SGKVDLNGSFCSGNCD 73

Query: 146 NAPMVMIGKDTYEDLTPERLEE 167
           +   V +    +  L PE  EE
Sbjct: 74  HGVCVTVEDQLFS-LKPEDTEE 94


>gi|319796227|ref|YP_004157867.1| ferredoxin-like protein [Variovorax paradoxus EPS]
 gi|315598690|gb|ADU39756.1| ferredoxin-like protein [Variovorax paradoxus EPS]
          Length = 117

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 89  PVGTR-AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           P G    H+  C          C +   ++  + C+ K   K    +  G +   +  C 
Sbjct: 9   PSGYYGRHIFFCLNERKNGEDSCAMHNAQEGFDRCKAK--VKEAGLSGPGKVRVNKAGCL 66

Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   P+ ++  +   Y  +  + ++EI+++    G+
Sbjct: 67  DRCAGGPVAVVYPEAVWYTFVDADDIDEIVESHLKNGE 104


>gi|325679206|ref|ZP_08158797.1| hypothetical protein CUS_5482 [Ruminococcus albus 8]
 gi|324109135|gb|EGC03360.1| hypothetical protein CUS_5482 [Ruminococcus albus 8]
          Length = 80

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  + C L+G  +++E  +  I ++ L       +      C G C     V +  
Sbjct: 2   KVTVCIGSSCHLKGSRQVVEQLQYLIAKEDLGD----KVKLGGTFCMGKCQQGVCVTVDD 57

Query: 155 DTYEDLTPERLEEIIDA 171
           + Y  ++PE + E  + 
Sbjct: 58  EFYS-VSPETVGEFFEK 73


>gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
 gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
          Length = 538

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G   H  VC    C     E++I   R+ I ++ L       +S  +V C G C   P+V
Sbjct: 19  GFTHHFLVCAGLGC--PRNEEIIAALRSVIAERGLQE----QISVRKVGCMGLCALGPIV 72

Query: 151 MIG--KDTYEDLTPERLEEIIDAF 172
           ++   +  Y+ +TPE  E+++ + 
Sbjct: 73  LVQPEEIFYQAVTPEDAEDLVASL 96


>gi|53802527|ref|YP_112790.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath]
 gi|53756288|gb|AAU90579.1| ferredoxin, 2Fe-2S [Methylococcus capsulatus str. Bath]
          Length = 108

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 16/99 (16%)

Query: 89  PVGTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P  ++  V VC  T         C   G   + +    +   +       G  +     C
Sbjct: 2   PKPSKH-VFVCAQTRPPGHPRGSCGQLGSTAVFQTFMQQF--EAGQL--YGQFALTSTGC 56

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            G C   P V++      Y  ++P  + EII+     G+
Sbjct: 57  LGTCDLGPTVLVYPEGVMYSKVSPADVSEIIEEHLKNGR 95


>gi|312797427|ref|YP_004030349.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
 gi|312169202|emb|CBW76205.1| Ferredoxin, 2Fe-2s [Burkholderia rhizoxinica HKI 454]
          Length = 111

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           +FY          + HV  C           C   G + + E  + +   K L    +G 
Sbjct: 3   SFY----------QHHVFFCLNQRDPGERPSCANCGAQAMQEYAKRR--IKALGLAGEGK 50

Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           +   +  C   C   P++++      Y  +    ++EIID+   G
Sbjct: 51  VRINKAGCLDRCELGPVLVVYPDATWYTYVDEADIDEIIDSHLVG 95


>gi|9955119|pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 gi|9955120|pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 gi|24158927|pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
 gi|24158928|pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
          Length = 110

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158
            C  RG  ++ +    KI   P                 C  AC+  P+V++      Y 
Sbjct: 21  SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNACMMGPVVVVYPDGVWYG 75

Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181
            + PE ++EI++    G     R
Sbjct: 76  QVKPEDVDEIVEKHLKGGEPVER 98


>gi|12644516|sp|O66511|FER2_AQUAE RecName: Full=Ferredoxin, 2Fe-2S; AltName: Full=AaFd4
          Length = 111

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158
            C  RG  ++ +    KI   P                 C  AC+  P+V++      Y 
Sbjct: 22  SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNACMMGPVVVVYPDGVWYG 76

Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181
            + PE ++EI++    G     R
Sbjct: 77  QVKPEDVDEIVEKHLKGGEPVER 99


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R ++ VCG T C     +++ +    +   + +   +D  +   +  C G C   P+V I
Sbjct: 4   RNYILVCGGTACESSRSDQIYQNLIEECKAQGI---AD-EVQVVKTGCFGFCEQGPIVKI 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +TPE  +E+I  
Sbjct: 60  LPEDSFYVKVTPEDAKELISE 80


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + +C  + C   G EK+ +    ++    L    D         C G C   P+V+
Sbjct: 24  KKPCITLCSGSACHATGSEKVADAILAELESHGLKDQVD----IRRTGCHGFCEQGPIVV 79

Query: 152 I--GKDTYEDLTPERLEEII 169
           +     +Y  + PE + EI+
Sbjct: 80  VYPEGISYLKVKPEDVCEIV 99


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +R  + VC  T C   G  KL++  R ++ ++ L  + D     +E  C G C    +V+
Sbjct: 24  SRPCITVCCGTGCRALGSVKLVDAFRAELAKQGLESSVD----IKETGCHGFCEKGSVVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           I      Y  + PE   +++     TG+
Sbjct: 80  IYPQNICYFHVKPEDAADVVAKTIKTGE 107


>gi|237654532|ref|YP_002890846.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T]
 gi|237625779|gb|ACR02469.1| Fe2-S2-type ferredoxin [Thauera sp. MZ1T]
          Length = 107

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 16/90 (17%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143
           + HV  C        + C      +L    + +   +  K       G++   +  C G 
Sbjct: 5   KHHVFFCCNQRQPGESCCNDHKASELQTYAKERTAALGLKGK-----GSVRVNKAGCLGR 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           C + P++++      Y  +  E ++EIID+
Sbjct: 60  CDDGPVIVVYPDNVWYTYVDKEDIDEIIDS 89


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + +C  + C   G EK+ +    ++    L    D         C G C   P+V+
Sbjct: 24  KKPCITLCSGSACHATGSEKVADAILAELESHGLKDQVD----IRRTGCHGFCEQGPIVV 79

Query: 152 I--GKDTYEDLTPERLEEII 169
           +     +Y  + PE + EI+
Sbjct: 80  VYPEGISYLKVKPEDVCEIV 99


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+ V +CG T C   G  K+ +  + +             +      C G C   P++++
Sbjct: 3   RSQVLICGGTGCTSSGSVKIAKRLQEE--IDKNGLTD--EVMVVRTGCFGLCALGPIMIV 58

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  +  E + EI+ +    G+
Sbjct: 59  YPEGTFYSMVKEEDIAEIVSEHLLKGR 85


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C       + E  +  +  +         ++     C G C   P+V 
Sbjct: 42  KHLQILICGGTGCKASASHVIAEKLQQAL--EKNKITD--QVNVITTGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  +TPE  EEI+     G
Sbjct: 98  IIPDNTFYTQVTPEDAEEIVSEHIIG 123


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR------NSDGTLSWEEVECQGACVNAP 148
            + VC  T C+  G +K+ E         P         + D  +  ++  CQG C   P
Sbjct: 25  RILVCSGTGCVATGSQKIYEKFMEIAKDAPGVTIEFGPHDKDAHVGVKKTGCQGVCELGP 84

Query: 149 MVMI--GKDT--YEDLTPERLEEI----------IDAFSTGQGDTIRPGPQ 185
           +V I  G D   Y  +  E  +EI          I+     +G  +  GP+
Sbjct: 85  LVRIQKGDDVIQYTKVQIEDCQEIFEKSVQGNETIERLLYQKGGKVSRGPE 135


>gi|295130232|ref|YP_003580895.1| hypothetical protein HMPREF0675_3726 [Propionibacterium acnes
           SK137]
 gi|291376839|gb|ADE00694.1| conserved hypothetical protein [Propionibacterium acnes SK137]
 gi|313763904|gb|EFS35268.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313771394|gb|EFS37360.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313811310|gb|EFS49024.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313814810|gb|EFS52524.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313828131|gb|EFS65845.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313830937|gb|EFS68651.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313833363|gb|EFS71077.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|314915108|gb|EFS78939.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314918738|gb|EFS82569.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920539|gb|EFS84370.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314932213|gb|EFS96044.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954671|gb|EFS99077.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314958507|gb|EFT02609.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314968282|gb|EFT12381.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
 gi|314973823|gb|EFT17919.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976474|gb|EFT20569.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314983413|gb|EFT27505.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|315080116|gb|EFT52092.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315096441|gb|EFT68417.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315099008|gb|EFT70984.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100913|gb|EFT72889.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315108130|gb|EFT80106.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327326847|gb|EGE68630.1| hypothetical protein HMPREF9338_01721 [Propionibacterium acnes
           HL096PA2]
 gi|327442950|gb|EGE89604.1| hypothetical protein HMPREF9570_02455 [Propionibacterium acnes
           HL043PA1]
 gi|327445074|gb|EGE91728.1| hypothetical protein HMPREF9571_02059 [Propionibacterium acnes
           HL043PA2]
 gi|327450053|gb|EGE96707.1| hypothetical protein HMPREF9581_02500 [Propionibacterium acnes
           HL087PA3]
 gi|327455394|gb|EGF02049.1| hypothetical protein HMPREF9586_01431 [Propionibacterium acnes
           HL083PA2]
 gi|328752721|gb|EGF66337.1| hypothetical protein HMPREF9579_02263 [Propionibacterium acnes
           HL087PA1]
 gi|328759360|gb|EGF72976.1| hypothetical protein HMPREF9588_00205 [Propionibacterium acnes
           HL025PA2]
 gi|328760314|gb|EGF73885.1| hypothetical protein HMPREF9343_01978 [Propionibacterium acnes
           HL099PA1]
          Length = 206

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+  C    C   G   L    ++K+         D  +      C   C +AP++++
Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNHAPLIIV 179

Query: 153 --GKDTYEDLTPERLEEIIDAF 172
                    LT + L+ I++  
Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200


>gi|315103067|gb|EFT75043.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
          Length = 206

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+  C    C   G   L    ++K+         D  +      C   C  AP++++
Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYAPLIVV 179

Query: 153 --GKDTYEDLTPERLEEIIDAF 172
                    LT + L+ I++  
Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200


>gi|282854371|ref|ZP_06263708.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|282583824|gb|EFB89204.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|314922939|gb|EFS86770.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314966391|gb|EFT10490.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314980870|gb|EFT24964.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090186|gb|EFT62162.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315093539|gb|EFT65515.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|327326990|gb|EGE68771.1| hypothetical protein HMPREF9341_02065 [Propionibacterium acnes
           HL103PA1]
          Length = 206

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+  C    C   G   L    ++K+         D  +      C   C  AP++++
Sbjct: 125 RHHLLACRGPRCNAAGAADLHARLKDKLAHAL-----DTEILVTVTGCMFPCNYAPLIVV 179

Query: 153 --GKDTYEDLTPERLEEIIDAF 172
                    LT + L+ I++  
Sbjct: 180 WPDGRCI-QLTADNLDRIVEDL 200


>gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 509

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 70  MAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEK-LIEVCRNKIH-QKPLHR 127
           M    +    +FY   + S    +A   VC  + CM  G ++ L +  + K+   K    
Sbjct: 1   MGVSTIHGAESFYEFLRPSHREKKA--FVCNGSACMCAGTQEPLKKKLQEKLGDDKVGE- 57

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
                     + C G C          + Y      ++++II  
Sbjct: 58  ----------MFCLGHCYENNAFHYDGENYAGNDINKIDQIIKG 91


>gi|291543752|emb|CBL16861.1| NADH dehydrogenase subunit E [Ruminococcus sp. 18P13]
          Length = 79

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC  + C L+G  +++E  +  I QK L       +      C   C N   V    
Sbjct: 2   KIKVCIGSSCHLKGSRQVVEQLQALIAQKKLED----QIELAGTFCMNNCQNGVCVSCDD 57

Query: 155 DTYEDLTPERLEE 167
             Y  LTP+ +++
Sbjct: 58  QIYS-LTPDTVDQ 69


>gi|269469007|gb|EEZ80575.1| ferredoxin [uncultured SUP05 cluster bacterium]
          Length = 103

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
            +FYT           H+  C          C   G +++    ++K   +      +G 
Sbjct: 1   MSFYT----------KHIFFCNNVRKDGKACCSQLGAKQMYRHAKDK--CRDEGMLGEGK 48

Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +   E  C G C + P+ ++      Y+ +  + ++EII     G G+ ++
Sbjct: 49  IGISESRCLGRCEHGPVAVVYPDNVWYQYIDEDDVDEIIAEHLIG-GNAVK 98


>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 633

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVN 146
               +  + VC  T C+  G  K+ E  R  +       + D  +    +   C G C  
Sbjct: 32  KDPAKTEIVVCHGTGCLAAGSPKVTEAMRKALA----EADLDIEVRPGIKTTGCHGFCSR 87

Query: 147 APMVMIG--KDTYEDLTPERLEEIIDA 171
            P+V+I      Y+ + PE + EII +
Sbjct: 88  GPLVIIQPEGIFYQKVKPEDVGEIIQS 114


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + V   T  +  G   +++    +I ++ L       +   EV C G C   P++M+  
Sbjct: 25  KLLVSMGTCGIAAGTAAVLKAIHQEIAERNLE----NAIEVSEVGCMGLCHAEPVIMLAD 80

Query: 155 D------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQI-DRISSAPA 194
           +       Y D+TPE++  I+         +I PG +  +R    P 
Sbjct: 81  EATGEKLIYGDVTPEQVPAIL----AAGTSSIAPGTRTLERNWYYPE 123


>gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G +  + +C TT C   G  ++ +  + +I  +    +    +   +  CQG C  AP+V
Sbjct: 26  GEKIRILIC-TTGCRALGAWEVYKTFQAEIEMQ----SLKDRVEVVDTGCQGLCTRAPVV 80

Query: 151 MIG--KDTYEDLTPERLEEII 169
            +      Y  +T   + EI+
Sbjct: 81  TVEPMGVFYGRVTESDVHEIV 101


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VCG T C     +K++   R +I++  L       +      C G C   P+V I  D
Sbjct: 43  ILVCGGTGCKSADSDKIVANLREEINKLGLQE----EVKVSITGCFGFCEKGPIVKINPD 98

Query: 156 --TYEDLTPERLEEIIDA-FSTGQ 176
              Y  + PE  +EI +     G+
Sbjct: 99  NVFYVKVKPEDAKEIAEKHLLKGE 122


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ VCG T C      +++E    ++                   C G C   P+V I
Sbjct: 4   KMHILVCGGTGCSASASHEIVEELNKEL--VAHDLTDFAK--VVVTGCFGFCERGPIVKI 59

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P   +EII+ 
Sbjct: 60  IPDNTFYTRVKPSDAKEIIEE 80


>gi|332971311|gb|EGK10274.1| 2Fe-2S ferredoxin [Desmospora sp. 8437]
          Length = 139

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPL---HRNSDGTLSWEEVECQGACV 145
            G + H+ +C    C   G E++ +  R +I H       H             C G C 
Sbjct: 6   TGVKVHLLLCNGASCTRNGAEEVTKAIRQEIQHLDLGKEVHTTK--------TFCNGRCK 57

Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
             P+V+     + Y+ +   R +E++   S    ++  P
Sbjct: 58  YGPIVVKYPAGEWYQQMDAGRGKELVRKLSQPGMESPVP 96


>gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 552

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  +  C +TPC+  G   + E  +  I  + L       +      C G C   P++ +
Sbjct: 21  RCRLLCCASTPCISSGGTAVYEAVKQAIEAEGLQ----AEVEAVATGCVGPCSRGPLITV 76

Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQ 176
                    YE +TPE    I+D     +
Sbjct: 77  KMEGREDVVYEQVTPEMAARILDKHLRSK 105


>gi|158334978|ref|YP_001516150.1| hypothetical protein AM1_1815 [Acaryochloris marina MBIC11017]
 gi|158305219|gb|ABW26836.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 186

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAP-- 148
            +  +++C  + C  RG  K++      +       +  D  +  + + C G C   P  
Sbjct: 107 QKGKIRICQKSSCRKRGSRKVLTALNTAL-----QTSGRDKEIQLQPMGCVGKCKAGPNL 161

Query: 149 MVMIGKDTYEDLTPERLEEIIDA 171
           +V+  K  Y  + P+ +  I+  
Sbjct: 162 VVLPDKTRYTRVKPKNITHILQQ 184


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 14/92 (15%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            + VC  T C+  G   + +    ++       +       +      C G C   P+V 
Sbjct: 7   KILVCCGTSCIANGALDVADAIEQELAARGINGVE------VCVTRTGCSGECEQGPIVR 60

Query: 151 -MIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            M     Y  +T      I+D+    +G+ ++
Sbjct: 61  FMPRDLMYYRVTVRDAAAIVDSL---EGEPVK 89


>gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1033

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGA 143
           +       R  V VCG   C+   C ++ +        K +     D  +      C G 
Sbjct: 17  YLRRQKSYRRQVLVCGGAGCISSNCGEVRDAL-----IKSVSTYKLDDEVKVMVTGCMGT 71

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           C   P++++      Y  + PE+ E+++  
Sbjct: 72  CAMGPVILVEPEGIFYTKMNPEKAEDVVAR 101


>gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
 gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
          Length = 534

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            ++ C  T C   G E + +  +  I  + L            V C G C   P+V    
Sbjct: 21  RLRCCTATGCRANGAEAVFKAVQQTIADQNLGD----RCEAVSVGCLGLCGAGPLVQCDP 76

Query: 154 -KDTYEDLTPERLEEIIDA 171
               Y D+ P++  +++ A
Sbjct: 77  SDRLYSDIRPDQAADLVAA 95


>gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
 gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301]
 gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
          Length = 534

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            ++ C  T C   G E + +  +  I  + L            V C G C   P+V    
Sbjct: 21  RLRCCTATGCRANGAEAVFKAVQQTIADQNLGD----RCEAVSVGCLGLCGAGPLVQCDP 76

Query: 154 -KDTYEDLTPERLEEIIDA 171
               Y D+ P++  +++ A
Sbjct: 77  SDRLYSDIRPDQAADLVAA 95


>gi|197123053|ref|YP_002135004.1| ferredoxin [Anaeromyxobacter sp. K]
 gi|196172902|gb|ACG73875.1| putative ferredoxin [Anaeromyxobacter sp. K]
          Length = 112

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 14/99 (14%)

Query: 93  RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV VC            C  +G E +    + ++ ++ L       +      C  AC
Sbjct: 4   RHHVFVCENHRDPSDPRGACGNKGSEAIRAALKAEVARRGLK----AQVRVNSAGCLDAC 59

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P +++      Y  ++P  + EI++    G     R
Sbjct: 60  AFGPSIVVYPEGVWYGHVSPADVPEIVERHLVGGTPVER 98


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score = 52.0 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGAC 144
            R  + VC  T C+  G   +    +  I +K L           D T+  ++  C G C
Sbjct: 23  QRKQILVCAGTGCVAGGSLNIYRRFKEIIKEKGLEVTLELKEEPHDNTIGLKKSGCHGFC 82

Query: 145 VNAPMVMIGKD--TYEDLTPERLEEIIDA 171
              P++ I  +   Y  ++ +  EEII+ 
Sbjct: 83  EMGPLIRIEPEGWLYIKVSIDDCEEIIEK 111


>gi|148270502|ref|YP_001244962.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermotoga petrophila RKU-1]
 gi|147736046|gb|ABQ47386.1| NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
           [Thermotoga petrophila RKU-1]
          Length = 69

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
             + C L+G  +++   +  + +K                C G C     V I    +  
Sbjct: 1   MGSSCHLKGSYEVVRRFQE-LQKKYN-------FKLYGSLCFGNCSQGVCVEIDGQLFSR 52

Query: 160 LTPERLEEIIDA 171
           +TPE  EEI+  
Sbjct: 53  VTPENAEEILKR 64


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 86  QLSPVGT-RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +  P G+ +  + VCG   C   G   L E  R  I +  L       ++   V C G C
Sbjct: 27  RFPPPGSGQRRLLVCGGLTCGAAGSFSLPEAFRKAIEKAGLEE----QVTVTLVGCLGLC 82

Query: 145 VNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P  +VM  +  Y  L  E +  I++    G     R
Sbjct: 83  EEGPLALVMPERVLYCRLKLEDVAAIVEEHFKGGKPVER 121


>gi|310779013|ref|YP_003967346.1| hypothetical protein Ilyop_1217 [Ilyobacter polytropus DSM 2926]
 gi|309748336|gb|ADO82998.1| conserved hypothetical protein [Ilyobacter polytropus DSM 2926]
          Length = 81

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC  + C ++G E++I++ +  I +  +       ++ +   C G C  A  V +  
Sbjct: 2   VLKVCVGSACHIKGSEQVIQILQKCIKESDMED----RITLKASFCLGNCTEAVSVTVDD 57


>gi|288817810|ref|YP_003432157.1| ferredoxin [Hydrogenobacter thermophilus TK-6]
 gi|288787209|dbj|BAI68956.1| ferredoxin [Hydrogenobacter thermophilus TK-6]
 gi|308751408|gb|ADO44891.1| Sucraseferredoxin family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 110

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQGACVNAPMVMI--GKDTY 157
            C  +G   + +    K+   P                  C G C   P +++      Y
Sbjct: 21  SCAEKGSRDIYQKFMEKLQMDPE------LFMSVVITPTGCLGPCGMGPTMVVYPDGVWY 74

Query: 158 EDLTPERLEEIID 170
            ++ PE +EEI++
Sbjct: 75  GNVRPEDVEEIVN 87


>gi|212550910|ref|YP_002309227.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549148|dbj|BAG83816.1| 2Fe-2S ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 100

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142
             + VC +          C  +G   L++    +    +   +              C  
Sbjct: 6   YTILVCNSYRVTGDAQGFCNKQGAVSLLQYITEECADRNIDAVVTT---------TACLS 56

Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176
            C   P+V++      Y  +T ++++EI+DA   G+
Sbjct: 57  VCSQGPVVVVQPNNYWYGGVTKDKVDEILDALEEGK 92


>gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
 gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
          Length = 606

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 19/90 (21%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           H++ C  + C   G E L       R+++            ++ + V C   C   P+V 
Sbjct: 5   HLRCCAASGCRSAGAEALRSALLAARDQLGGAAD------AVTIKPVGCLRLCGRGPLVA 58

Query: 152 IGK----------DTYEDLTPERLEEIIDA 171
           + +          + Y DLTP +   +++A
Sbjct: 59  LDRTGEAPGTASTELYADLTPAQAPALLEA 88


>gi|86157642|ref|YP_464427.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C]
 gi|220917843|ref|YP_002493147.1| ferredoxin [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774153|gb|ABC80990.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-C]
 gi|219955697|gb|ACL66081.1| putative ferredoxin [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 112

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 14/99 (14%)

Query: 93  RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV VC            C  +G E +    + ++ ++ L       +      C  AC
Sbjct: 4   RHHVFVCENHRDPSDPRGACGNKGSEAIRAALKAEVARRGLK----AQVRVNGAGCLDAC 59

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P +++      Y  ++P  + EI++    G     R
Sbjct: 60  AFGPSIVVYPEGVWYGHVSPADVPEIVERHLVGGTPVER 98


>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 584

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIG 153
            ++V   +  M  G  K++E  + ++      R+ +  +  E   C G C   P+V +I 
Sbjct: 2   KIRVGLGSCGMAAGGNKVMECIQQEL------RSRNLDIPVEPTGCIGLCFFEPLVDVID 55

Query: 154 KD---TYEDLTPERLEEIIDAFSTGQGD 178
            D   TY ++TPE + +II++   G+  
Sbjct: 56  GDDVYTYGNVTPEMIPKIIESHVIGKKP 83


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score = 51.7 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C   G +++      ++ +  L       +   E  C G C + P+V++
Sbjct: 5   RAHVLVCGGTGCKANGSKEIQLTFARELQKFGLQD----EVMVVETGCHGFCEHGPLVIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + PE ++ I++ 
Sbjct: 61  YPEGTFYCSVKPENVKTIVEE 81


>gi|284164276|ref|YP_003402555.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284013931|gb|ADB59882.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 410

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R +          D  ++     C G C + PMV +  
Sbjct: 321 HVAVCMNQTCAEMGSPSVLERLRQEARDSDHC---DARIT--RSSCLGRCGDGPMVAVYP 375

Query: 153 GKDTYEDLTPERLEEII 169
               Y D+  +  E I+
Sbjct: 376 DGIWYGDVASQDAERIV 392


>gi|302339490|ref|YP_003804696.1| ferredoxin 2Fe-2S [Spirochaeta smaragdinae DSM 11293]
 gi|301636675|gb|ADK82102.1| ferredoxin, 2Fe-2S [Spirochaeta smaragdinae DSM 11293]
          Length = 102

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLT 161
           C  +G   L+   + ++      R  DG +S     C   C   P++ I      Y  + 
Sbjct: 24  CEKKGAIGLVPYIQEELA----DRGMDG-VSVAMTSCLNMCDRGPVMAIFPDNIWYGGVD 78

Query: 162 PER-LEEIIDAFSTGQ 176
            E  +++I+DA   G+
Sbjct: 79  SEDVVDQILDALEGGR 94


>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 597

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V VC  T C +     LI+  R +I    L       +S     C G C   P V 
Sbjct: 2   ERIQVLVCAGTGCSIGNSGALIDAFRTEIKSMGLES----EVSVLRTGCLGLCGVGPNVS 57

Query: 152 I--GKDTYEDLTPERLEEII 169
           I      Y+ +  E ++EI+
Sbjct: 58  IYPDNIIYKSVKVEDVKEIV 77


>gi|213029189|ref|ZP_03343636.1| NADH dehydrogenase subunit E [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 34

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 142 GACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           G C   P +MI +DT+  LTPE + E+++ + 
Sbjct: 3   GNCDKGPNMMIDEDTHSHLTPEAIPELLERYK 34


>gi|239814020|ref|YP_002942930.1| hypothetical protein Vapar_1013 [Variovorax paradoxus S110]
 gi|239800597|gb|ACS17664.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 118

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 87  LSPV--GTRAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQ 141
           + P   G + H+ VC    C   G  + L +   +K   K    N  G L  +   V C 
Sbjct: 5   VKPKIGGYKRHLLVCTGPRCSPDGASQDLFDSLGDKF--KAAGLNE-GALRVKRSRVGCF 61

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            AC   P++ +      Y ++TPE ++ I+     G
Sbjct: 62  AACKGGPVMCVQPDGTWYYNVTPENMDRILSQHLVG 97


>gi|134096153|ref|YP_001101228.1| putative ferredoxin [Herminiimonas arsenicoxydans]
 gi|133740056|emb|CAL63107.1| Putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 106

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+ +C          C  +G     +  + +   K L  +  G +   +  C G C   P
Sbjct: 11  HLFICMNQRDDGRECCAEKGAHAAQKHLKAR--VKELGLSRSGDVRINQSGCLGRCEEGP 68

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           +++I      Y  +    ++EIID    G
Sbjct: 69  VLVIYPQGTWYTYVDNHDIDEIIDEHLVG 97


>gi|220931030|ref|YP_002507938.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
 gi|219992340|gb|ACL68943.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
          Length = 666

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             VQVC  T C L G   L++    +   +    +    +  E   C   C NAP V +G
Sbjct: 589 VPVQVCVGTCCYLHGSYDLLQGLIER--VEEEGLSD--KVDIEATFCFENCKNAPSVKVG 644

Query: 154 KDTYEDLTPERLEEIIDAFS 173
                 +  E +++I+    
Sbjct: 645 NQLLSKV--ESVDDILKHLK 662


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C      K+I     +I +  +       +      C G C   P++++
Sbjct: 5   RAHVLVCGGTGCTSSNSNKIITELEEQIARNGIQ----NEVKVVRTGCFGLCAEGPIMVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E ++EI++ 
Sbjct: 61  YPEGAMYTMVKVEDVKEIVEE 81


>gi|326201305|ref|ZP_08191177.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988873|gb|EGD49697.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 86

 Score = 51.7 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  + C L+G  ++I   +  I    L       +  +   C G C     V IG  
Sbjct: 4   IYVCVGSSCHLKGSYQIINCFQRMIKDNNLES----RVELKASFCMGHCTTGVCVKIGDT 59

Query: 156 TYEDL 160
            Y D+
Sbjct: 60  FYGDV 64


>gi|302038080|ref|YP_003798402.1| ferredoxin [Candidatus Nitrospira defluvii]
 gi|300606144|emb|CBK42477.1| Ferredoxin, 2Fe-2S [Candidatus Nitrospira defluvii]
          Length = 108

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 19/108 (17%)

Query: 92  TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVEC 140
            + H+ VC            C  +G  +L+      +      P        ++     C
Sbjct: 4   PKYHILVCTNARPPGHPKPSCGGQGSAQLLMSFNMGLMQRGIMPGEV----LVT--GSSC 57

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQI 186
            G C   P V++      Y  +T   +  I+D    G     +  P  
Sbjct: 58  LGPCEQGPTVVVYPDNTWYSKVTEADVATILDEHIKGGKPAAKLNPDS 105


>gi|169236276|ref|YP_001689476.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1]
 gi|167727342|emb|CAP14128.1| cobalt chelatase,oxygen-independent [Halobacterium salinarum R1]
          Length = 407

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R +        +    L      C G C + P V +  
Sbjct: 318 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 372

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y+ + P+    I+ +
Sbjct: 373 DGVWYQRVDPDDAGRIVSS 391


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score = 51.7 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             V VC  T C     + L +  + +I+++ L  N    +   +  C G C   P+VM+ 
Sbjct: 33  TQVMVCSGTACTSADSQILRQALQEEIYKRGLEEN----IKLFKTGCFGFCQQGPIVMVH 88

Query: 153 -GKDTYEDLTPERLEEIIDA 171
            G   Y  + PE   ++++A
Sbjct: 89  PGGVFYCQVRPEDTGKLVEA 108


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 51.3 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VCG T C       +IE  + +I +  L  ++          C G C   P+V 
Sbjct: 33  DKRDILVCGGTGCTSSESLLIIEKLKEEIKKAGLEDHA----MVHLTGCFGFCAMGPIVK 88

Query: 152 I--GKDTYEDLTPERLEEIIDAFST 174
           +      Y  + P+  EEI+++   
Sbjct: 89  VYPDNVFYVHVKPDDAEEIVNSHIA 113


>gi|126656491|ref|ZP_01727752.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110]
 gi|126622177|gb|EAZ92884.1| hypothetical protein CY0110_22347 [Cyanothece sp. CCY0110]
          Length = 198

 Score = 51.3 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 87  LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139
           ++P G     +  + +CG + C  RG  KL ++       +  +         ++ E+  
Sbjct: 104 VNPQGKTCPKKGKILLCGKSDCAKRGGRKLHQLLEQTLCNLGLQDH-------VTIEKTS 156

Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171
           CQ  C  AP  ++M GK  +    P+ + E+++ 
Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKADPKNIAELLEE 190


>gi|323706139|ref|ZP_08117708.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534583|gb|EGB24365.1| hypothetical protein ThexyDRAFT_2000 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 81

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + VC  + C L+G   +I   +  I     +         +  +   C G C+ A  V 
Sbjct: 2   VITVCVGSSCHLKGSYDVINKLKEMIKNYGIED-------KVELKADFCMGNCLRAVSVK 54

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ 176
           I       + P  +E+    +  G+
Sbjct: 55  IDDGKCLSVKPNNVEKFFKEYVLGE 79


>gi|16554498|ref|NP_444222.1| ferredoxin [Halobacterium sp. NRC-1]
          Length = 397

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R +        +    L      C G C + P V +  
Sbjct: 308 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 362

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y+ + P+    I+ +
Sbjct: 363 DGVWYQRVDPDDAGRIVSS 381


>gi|266619057|ref|ZP_06111992.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288869440|gb|EFD01739.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 79

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++I   +  + +  L       +      C G CVN   V +  
Sbjct: 2   RVTICIGSACHLKGSREIIAQLQQLVKENHLES----KVDLNGSFCSGNCVNGVCVTVDG 57

Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
             +  L PE  +E  D    G+
Sbjct: 58  QLFS-LKPEDTKEFFDKEIKGR 78


>gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 533

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
            + EIAT     +     T+  ++ C    C+    E + +     I    L       +
Sbjct: 5   ELKEIAT-----KSREKQTKIRIRCCSAAGCLSSEGETVKKNLTTAIAAAGLEE----KV 55

Query: 134 SWEEVECQGACVNAPMVMIGKD--TYEDLTPERLEEIIDAFST 174
               V C   C   P+V +      YE +TP+++ +I+     
Sbjct: 56  EVCGVGCMKFCGRGPLVAVDDRNQLYEFVTPDQVGDIVKKLQK 98


>gi|284052702|ref|ZP_06382912.1| hypothetical protein AplaP_14633 [Arthrospira platensis str.
           Paraca]
 gi|291570234|dbj|BAI92506.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 80

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + +C    C  +G  K+++  +   +         G        C G+C N PMV++   
Sbjct: 9   IIICHNRTCRKQGAAKVLQAFQAA-NFSVGVITPSG--------CLGSCGNGPMVLVLPE 59

Query: 154 KDTYEDLTPERLEEI 168
           +  Y+ +TPE++  I
Sbjct: 60  QVWYDHVTPEQVPSI 74


>gi|55978241|ref|YP_145297.1| cobalamin biosynthesis protein CbiX [Thermus thermophilus HB8]
 gi|55773414|dbj|BAD71854.1| cobalamin biosynthesis protein CbiX [Thermus thermophilus HB8]
          Length = 367

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145
             P G   H+ +C    C  RG   L+      +    P        +      C   C 
Sbjct: 271 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEGLRDLGP-------LVQLTPTPCLSRCG 323

Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTG 175
             P+++       Y  L+PE +  +  A   G
Sbjct: 324 KGPVLIAYPEGVVYGGLSPEDVLPLRKAHLEG 355


>gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1044

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + VC  T C   G  ++++  ++++ ++ +       +      C G C  AP++ 
Sbjct: 24  ARNVIHVCM-TGCRAYGAAEVLQSLQDEVKRQGME----KEVEVRSTGCHGFCARAPVIA 78

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS-APA 194
           +      Y+++ PE   EII       G TI+    IDR++   P 
Sbjct: 79  LDPLGVQYQEVGPEDAAEII-------GQTIKQNRLIDRLAYKEPK 117


>gi|332968954|gb|EGK08000.1| 2Fe-2S ferredoxin [Desmospora sp. 8437]
          Length = 137

 Score = 51.3 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPL---HRNSDGTLSWEEVECQGACV 145
            G + H  +C    C   G E++ +  R +I H       H       +     C G C 
Sbjct: 4   TGMKVHFLLCNGASCTRNGAEEVTKAIRQEIQHLDLGKEVHTTK----TL----CNGRCK 55

Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           + P+V+     + Y+ +   R +E++        ++  P
Sbjct: 56  HGPIVVQYPAGEWYQQMDAGRGKELVRKLMQPGMESPVP 94


>gi|46255086|ref|YP_005998.1| cbiX protein [Thermus thermophilus HB27]
 gi|46197935|gb|AAS82345.1| cbiX protein [Thermus thermophilus HB27]
          Length = 409

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-HQKPLHRNSDGTLSWEEVECQGACV 145
             P G   H+ +C    C  RG   L+      +    P        +      C   C 
Sbjct: 313 RHPHGPFTHLLLCTGEDCRERGALGLLRRLEEGLRDLGP-------LVQLTPTPCLSRCG 365

Query: 146 NAPMVM--IGKDTYEDLTPERLEEIIDAFSTG 175
             P+++       Y  L+PE +  +  A   G
Sbjct: 366 KGPVLIAYPEGVVYGGLSPEDVLPLRKAHLEG 397


>gi|222481341|ref|YP_002567577.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222454717|gb|ACM58980.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 408

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R          + +         C G C + PMV +  
Sbjct: 319 HVAVCTNQTCAADGAPAVLEGLRQ-----AARDSEECDARITRSSCLGRCGDGPMVAVYP 373

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y D+  +  + I+ +
Sbjct: 374 DGVWYGDVDGDDADRIVSS 392


>gi|67921465|ref|ZP_00514983.1| unknown protein [Crocosphaera watsonii WH 8501]
 gi|67856577|gb|EAM51818.1| unknown protein [Crocosphaera watsonii WH 8501]
          Length = 185

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
            + VC  + C  RG + + +    ++ ++ L   SD  +  +   C   C   P  +VM 
Sbjct: 107 KILVCQKSSCWKRGGQSVCQRLEKELEKQGL---SD-RIKIKLTGCLKQCKKGPNVVVMP 162

Query: 153 GKDTYEDLTPERLEEII 169
            K  Y  + P  + E++
Sbjct: 163 HKARYSQIKPGEVGELL 179


>gi|302387730|ref|YP_003823552.1| hypothetical protein Closa_3402 [Clostridium saccharolyticum WM1]
 gi|302198358|gb|ADL05929.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 79

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++I   +         ++ D  +      C G CVN   V +  
Sbjct: 2   RVTICIGSACHLKGSREIIAQLQTL----VKEQHLDDKVDLNGSFCCGDCVNGVCVTVDG 57

Query: 155 DTYEDLTPERLEEIIDA 171
             Y  L PE   E  D 
Sbjct: 58  QLYS-LKPEDTREFFDK 73


>gi|296132219|ref|YP_003639466.1| Sucraseferredoxin family protein [Thermincola sp. JR]
 gi|296030797|gb|ADG81565.1| Sucraseferredoxin family protein [Thermincola potens JR]
          Length = 102

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C  +   +L+E    +I ++ L       +      C G 
Sbjct: 4   PKYHIFVCTSSRPTGQQKGFCHAKASVELMEAFMEEIEERGLGS----EVFVTNTGCLGI 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V++      Y  +T + +EEI++    G
Sbjct: 60  CEKGPIVIVYPDNVWYGAVTVDDVEEIMEEHIEG 93


>gi|172035462|ref|YP_001801963.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142]
 gi|171696916|gb|ACB49897.1| hypothetical protein cce_0546 [Cyanothece sp. ATCC 51142]
          Length = 198

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 87  LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139
           ++P G     +  + +CG + C  RG  KL ++       +  +         ++ E+  
Sbjct: 104 VNPRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTLCNLGLQDH-------VTIEKTS 156

Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171
           CQ  C  AP  ++M GK  +    P+ + E+++ 
Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKANPKNIAELLEE 190


>gi|57864802|gb|AAW56977.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 198

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 87  LSPVGT----RAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVE 139
           ++P G     +  + +CG + C  RG  KL ++       +  +         ++ E+  
Sbjct: 104 VNPRGKTCPKKGKILLCGKSDCAKRGGRKLHQMLEQTLCNLGLQDH-------VTIEKTS 156

Query: 140 CQGACVNAP--MVMIGKDTYEDLTPERLEEIIDA 171
           CQ  C  AP  ++M GK  +    P+ + E+++ 
Sbjct: 157 CQKRCGKAPNLILMPGKAKHSKANPKNIAELLEE 190


>gi|325972700|ref|YP_004248891.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy]
 gi|324027938|gb|ADY14697.1| hypothetical protein SpiBuddy_2889 [Spirochaeta sp. Buddy]
          Length = 88

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA-- 147
              + HVQ+C  T C ++G   L+    + +    L      +   E V C G C +A  
Sbjct: 3   KKEKVHVQICVGTACFVQGGADLLLY-NDFLDPAVLC-----SCEIEGVSCLGGCKDAQS 56

Query: 148 ----PMVMIGKDTYEDLTPERLEEIIDA 171
               P V IG+  Y  +  E+L +++  
Sbjct: 57  KDRPPYVRIGEKVYGSVNQEKLCKLLAE 84


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + VCG T C     +K++E      NK+  +         +      C G C   P+V I
Sbjct: 43  ILVCGGTGCKSSDSDKIVENLNAEINKLGIQD-------EVKVSITGCFGFCEKGPIVKI 95

Query: 153 GKD--TYEDLTPERLEEIIDA-FSTGQ 176
             D   Y  + PE  +EI +     G+
Sbjct: 96  NPDNVFYVKVKPEDAKEIAEKHLLKGE 122


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + +C  + C+  G  ++I   R +I +  L    D         C G C   P+V+
Sbjct: 24  DKPCISICAGSGCVASGALEVIAAFREEIEKHGLAATVDTK----GTGCPGFCERGPLVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           I   +  Y  +TPE + EII  
Sbjct: 80  IYPEEICYLQVTPEDVPEIIAQ 101


>gi|83313658|ref|YP_423922.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82948499|dbj|BAE53363.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 113

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQ 141
           R HV +C            C  RG E L E  +    K+  K         +      C 
Sbjct: 13  RVHVFICTNRRPDDNKRGSCAGRGSEALREHMKDAQKKLGLKD--------VRINSAGCL 64

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             C   P+++I      Y   +   L+EI++    G G   R
Sbjct: 65  DRCGKGPVMVIYPEGIWYSFNSVADLDEILETHIVGGGRVER 106


>gi|34497956|ref|NP_902171.1| ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC 12472]
 gi|34103811|gb|AAQ60172.1| probable ferredoxin 2fe-2s protein [Chromobacterium violaceum ATCC
           12472]
          Length = 102

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 95  HVQVCGTT--PCMLR----GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C      C       G   L+   ++K   K L    +G +   +  C G C + P
Sbjct: 7   HVFICCNQRDACQDCCNNHGSSALLGYMKDK--VKALGLAGEGKIRVNKAGCLGRCDDGP 64

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           ++++   +  Y  +  + ++EI+  
Sbjct: 65  VMVVYPEETWYTFVDKDDIDEIVSE 89


>gi|297831032|ref|XP_002883398.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329238|gb|EFH59657.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 103

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIE 62
          V E++S YP +  Q AVIPLL  AQ+Q  GW+  +A+ 
Sbjct: 1  VKEILSYYPSNYKQFAVIPLLDLAQQQHGGWLPVSAMN 38


>gi|86608900|ref|YP_477662.1| iron-sulfur cluster-binding protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557442|gb|ABD02399.1| iron-sulfur cluster-binding protein, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 216

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MV 150
           +  V VC  + C  RG   +++     +          G++  + V C   C   P  + 
Sbjct: 124 KGKVLVCQKSDCYRRGAGAVMQALNAHLAAYS------GSICVQGVGCMKDCKRGPHVVF 177

Query: 151 MIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
           M  K  Y  ++P+ +  +++           P PQ    ++
Sbjct: 178 MPDKARYSGVSPQGIPALLERHF----PLSSPQPQEVEAAA 214


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VCG T C      ++IE  + +   +    +    +      C G C   P+V 
Sbjct: 33  DKRDILVCGGTGCTSSDSLQIIENLKAE--IEKAGLSDHAMVHL--TGCFGFCAMGPIVK 88

Query: 152 I--GKDTYEDLTPERLEEIIDAFST 174
           +      Y  + PE   EI+ +   
Sbjct: 89  VYPDNVFYVHVKPEDAAEIVQSHIA 113


>gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
 gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
          Length = 534

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            ++ C    C+      +    +        H      +  + V C G C   P+V I  
Sbjct: 18  RIRCCTVGGCLSANGLAVKTALQ--TAVADHHLAE--QVKVKGVGCLGLCSKGPLVQIDP 73

Query: 153 GKDTYEDLTPERLEEII 169
               YE +TPE+  +++
Sbjct: 74  DGRLYEQVTPEQATQLV 90


>gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
          Length = 592

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + VC  T C+     ++    +  +H   L          +   C G C   P+V+I  
Sbjct: 3   RILVCAGTGCVASHSRQVTARLKAALHAHHLEE----RFQVDNTGCHGFCEQGPLVIIEP 58

Query: 153 GKDTYEDLTPERLEEII-DAFSTGQ 176
               Y  +  E +E I+ +    G+
Sbjct: 59  EGILYCRVREEDVEAIVTEHLEQGR 83


>gi|76812106|ref|YP_332031.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b]
 gi|167813980|ref|ZP_02445660.1| ferredoxin family protein [Burkholderia pseudomallei 91]
 gi|167822502|ref|ZP_02453973.1| ferredoxin family protein [Burkholderia pseudomallei 9]
 gi|167892587|ref|ZP_02479989.1| ferredoxin family protein [Burkholderia pseudomallei 7894]
 gi|167909304|ref|ZP_02496395.1| ferredoxin family protein [Burkholderia pseudomallei 112]
 gi|254187922|ref|ZP_04894434.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237]
 gi|76581559|gb|ABA51034.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710b]
 gi|157935602|gb|EDO91272.1| ferredoxin family protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 105

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 6   RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V++      Y  +    ++EI+++    GQ
Sbjct: 64  EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98


>gi|160940740|ref|ZP_02088082.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436260|gb|EDP14027.1| hypothetical protein CLOBOL_05634 [Clostridium bolteae ATCC
           BAA-613]
          Length = 79

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++I   +          +    +      C G C +   V +  
Sbjct: 2   KVTICIGSACHLKGSREIISKLQKL--VDENGLSD--KVDLNGAFCSGNCDHGVCVTVEG 57

Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
           + Y  L PE  EE  +    G+
Sbjct: 58  ELYS-LKPEDTEEFFENEIKGR 78


>gi|296444629|ref|ZP_06886593.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b]
 gi|296257897|gb|EFH04960.1| ferredoxin, 2Fe-2S (AaFd4) [Methylosinus trichosporium OB3b]
          Length = 110

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 84  QFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
             +  PV  + HV  C            C   G + L +  + K+  +PL    D  +S 
Sbjct: 1   MLEDLPVVFKYHVFTCFQQRPPGHPRGSCTTSGAKPLWDRLQAKLGAQPL---PD--VSM 55

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
               C G C   P++++      Y   TPE ++EI+ +
Sbjct: 56  TATACLGFCRAGPLMVVYPQGVWYAPRTPEDIDEIVQS 93


>gi|194336996|ref|YP_002018790.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309473|gb|ACF44173.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
          Length = 102

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC       TP   C  +    LI    +++            ++     C   
Sbjct: 4   PKHHILVCASFRAQGTPQGICHKKESLSLIPYIESELS-DRGMT----DVTVSATGCLNL 58

Query: 144 CVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177
           C   P++++      Y ++   E+++EI+DA   G+ 
Sbjct: 59  CEKGPVLVVYPENFWYGEVDGEEKIDEILDALEEGEA 95


>gi|167736876|ref|ZP_02409650.1| ferredoxin family protein [Burkholderia pseudomallei 14]
          Length = 109

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 10  RHHVFFCLNRREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V++      Y  +    ++EI+++    GQ
Sbjct: 68  EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102


>gi|53718046|ref|YP_107032.1| putative ferredoxin [Burkholderia pseudomallei K96243]
 gi|126440126|ref|YP_001057489.1| ferredoxin, putative [Burkholderia pseudomallei 668]
 gi|126454789|ref|YP_001064738.1| ferredoxin family protein [Burkholderia pseudomallei 1106a]
 gi|134279496|ref|ZP_01766208.1| ferredoxin family protein [Burkholderia pseudomallei 305]
 gi|167717857|ref|ZP_02401093.1| ferredoxin family protein [Burkholderia pseudomallei DM98]
 gi|167844084|ref|ZP_02469592.1| ferredoxin family protein [Burkholderia pseudomallei B7210]
 gi|167901084|ref|ZP_02488289.1| ferredoxin family protein [Burkholderia pseudomallei NCTC 13177]
 gi|167917337|ref|ZP_02504428.1| ferredoxin family protein [Burkholderia pseudomallei BCC215]
 gi|217419647|ref|ZP_03451153.1| ferredoxin family protein [Burkholderia pseudomallei 576]
 gi|226193683|ref|ZP_03789286.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237810640|ref|YP_002895091.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346]
 gi|242314153|ref|ZP_04813169.1| ferredoxin family protein [Burkholderia pseudomallei 1106b]
 gi|254181993|ref|ZP_04888590.1| ferredoxin family protein [Burkholderia pseudomallei 1655]
 gi|254196590|ref|ZP_04903014.1| ferredoxin family protein [Burkholderia pseudomallei S13]
 gi|254261131|ref|ZP_04952185.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a]
 gi|254295958|ref|ZP_04963415.1| ferredoxin family protein [Burkholderia pseudomallei 406e]
 gi|52208460|emb|CAH34394.1| putative ferredoxin [Burkholderia pseudomallei K96243]
 gi|126219619|gb|ABN83125.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 668]
 gi|126228431|gb|ABN91971.1| ferredoxin family protein [Burkholderia pseudomallei 1106a]
 gi|134248696|gb|EBA48778.1| ferredoxin family protein [Burkholderia pseudomallei 305]
 gi|157806245|gb|EDO83415.1| ferredoxin family protein [Burkholderia pseudomallei 406e]
 gi|169653333|gb|EDS86026.1| ferredoxin family protein [Burkholderia pseudomallei S13]
 gi|184212531|gb|EDU09574.1| ferredoxin family protein [Burkholderia pseudomallei 1655]
 gi|217396951|gb|EEC36967.1| ferredoxin family protein [Burkholderia pseudomallei 576]
 gi|225934261|gb|EEH30245.1| ferredoxin family protein [Burkholderia pseudomallei Pakistan 9]
 gi|237505352|gb|ACQ97670.1| ferredoxin family protein [Burkholderia pseudomallei MSHR346]
 gi|242137392|gb|EES23794.1| ferredoxin family protein [Burkholderia pseudomallei 1106b]
 gi|254219820|gb|EET09204.1| ferredoxin, 2Fe-2S [Burkholderia pseudomallei 1710a]
          Length = 109

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 10  RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V++      Y  +    ++EI+++    GQ
Sbjct: 68  EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 102


>gi|10581045|gb|AAG19841.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 199

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R +        +    L      C G C + P V +  
Sbjct: 110 HVAVCTNQTCAAEGAPAVLERLRQEAR-DADEDS----LRVTRTSCLGQCGDGPNVAVYP 164

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y+ + P+    I+ +
Sbjct: 165 DGVWYQRVDPDDAGRIVSS 183


>gi|74316297|ref|YP_314037.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC
           25259]
 gi|74055792|gb|AAZ96232.1| putative ferredoxin 2fe-2s protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 105

 Score = 50.9 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + HV  C          C   G + + +  + K   K  + N +G        C   C  
Sbjct: 7   KHHVFFCTNQRDDGAKCCGAAGGQHMRDYLKKK--IKQANLNGEGKCRINTAGCMDRCDE 64

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            P++++      Y  +    ++EI +A    G+
Sbjct: 65  GPVLVVYPEGVWYTYVDESDIDEIFEAHLKEGR 97


>gi|291523454|emb|CBK81747.1| NADH dehydrogenase subunit E [Coprococcus catus GD/7]
          Length = 79

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G   +I+     I      R  +  +      C G C N   V I  
Sbjct: 2   TITICIGSSCHLKGSRTIIQKLEELIT----ERQLNDKIELNGSFCMGECSNGVCVKIND 57

Query: 155 DTYEDLTPERLEEIID 170
           + +  ++PE +    +
Sbjct: 58  ELFS-VSPETVNTFFE 72


>gi|325972703|ref|YP_004248894.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy]
 gi|324027941|gb|ADY14700.1| hypothetical protein SpiBuddy_2892 [Spirochaeta sp. Buddy]
          Length = 86

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V++C  + C  RG  + ++     + ++ L   +D  ++     C G C   P + 
Sbjct: 2   EKLVVELCLGSSCFARGNSQTLQALEAYLKEEGL---AD-RVALVGHLCLGNCAKGPNLR 57

Query: 152 IGKDTYEDLTPERLEEII 169
           IG +TY  L    +  +I
Sbjct: 58  IGSETYSGLDTASVLALI 75


>gi|304404619|ref|ZP_07386280.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9]
 gi|304346426|gb|EFM12259.1| putative 2Fe-2S ferredoxin [Paenibacillus curdlanolyticus YK9]
          Length = 120

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           TR HV +C    CM +  +++    R +I        +D  +     +C G C +A +V 
Sbjct: 9   TRHHVLICNGGSCMRQLGDEVTLAIREEIKLHK----ADNYIHTTRTKCNGRCEDACVVT 64

Query: 152 I--GKDTYEDLTPERLEEII-DAFSTGQ 176
           +      Y+ +TPE  + ++ +    G+
Sbjct: 65  VYPEGIWYQGMTPESGKRLVREHLLRGE 92


>gi|212640009|ref|YP_002316529.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
 gi|212561489|gb|ACJ34544.1| 2Fe-2S ferredoxin [Anoxybacillus flavithermus WK1]
          Length = 123

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GT+ HV +C    CM +G E++ +  R++I +  LH      +      C G C +A +V
Sbjct: 11  GTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHT----HVHTTRTRCNGRCEDACVV 66

Query: 151 MI 152
           ++
Sbjct: 67  IV 68


>gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
          Length = 570

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI-----HQKPLHRNSDGTLSWEEVECQGAC 144
            G++  + +C  T C+  G  K+      K+                 L   +  CQG C
Sbjct: 10  TGSKRRIIICAGTGCVSSGALKVHGALLKKLSERNMDIDVKLAPESQNLHLSKSGCQGFC 69

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P+V +      Y  +T   +++I++ 
Sbjct: 70  QMGPLVTVLPDNILYCKVTTSDVDDIVEQ 98


>gi|117923365|ref|YP_863982.1| ferredoxin 2Fe-2S [Magnetococcus sp. MC-1]
 gi|117607121|gb|ABK42576.1| ferredoxin, 2Fe-2S [Magnetococcus sp. MC-1]
          Length = 103

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 92  TRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + HV VC            C   G +   E    ++ ++ ++      +      C G 
Sbjct: 3   PKHHVFVCMNRRPEGHPRGSCQASGSQGTFEAFNTELEKRGMYE----QVFVTGTFCMGP 58

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           C   P+ ++      Y ++ PE + EI D      G+ + 
Sbjct: 59  CDRGPVAVVYPEGVWYGNVKPEDVSEIFDKHFVDGGEPVE 98


>gi|319645903|ref|ZP_08000133.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
 gi|317391653|gb|EFV72450.1| hypothetical protein HMPREF1012_01167 [Bacillus sp. BT1B_CT2]
          Length = 128

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ +C  T C   G E+L +V   +I      R  D  +      C G C +   V I
Sbjct: 10  KHHIFICNGTSCNRAGAEELTQVILQEIS----ERELDDVIHTTRTRCNGRCQDK-CVAI 64

Query: 153 G---KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199
                  Y DL PE +  +ID+  T +    +     D      + G+ S
Sbjct: 65  HYPRGTWYRDLIPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVIS 114


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V VC  T C +    +LI     +I    L       +      C G C   P + 
Sbjct: 4   KRTQVLVCAGTGCTIGNSGELITEFEKEIKALGLE----NEIEVLRTGCLGLCGVGPNIS 59

Query: 152 I--GKDTYEDLTPERLEEII 169
           I      Y+ +  E ++EI+
Sbjct: 60  IYPDNIIYKSVKVEDVKEIV 79


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
               G +  + +C  + C   G   + E    ++  K    +    +      C G C  
Sbjct: 21  QHKDGNKKLISLCSGSGCGAYGTASVYESLVAEL--KKAGLSD--LVEVRLTGCHGFCEK 76

Query: 147 APMVMI--GKDTYEDLTPERLEEIID-AFSTGQ 176
            P+++I      Y  + P+ + EI++     G+
Sbjct: 77  GPIMVIHPEGIFYPQVKPDMIPEIVEMTLKNGE 109


>gi|220929709|ref|YP_002506618.1| hypothetical protein Ccel_2301 [Clostridium cellulolyticum H10]
 gi|220000037|gb|ACL76638.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 86

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + VC  + C L+G  ++I   +  I +  L          +   C G C     V IG  
Sbjct: 4   IYVCVGSSCHLKGSYQIINCFQRMIKENNLES----KAELKASFCMGHCTTGVCVKIGDT 59

Query: 156 TYEDL 160
            Y D+
Sbjct: 60  FYGDV 64


>gi|83719806|ref|YP_440936.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
 gi|167579650|ref|ZP_02372524.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis TXDOH]
 gi|167617728|ref|ZP_02386359.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis Bt4]
 gi|257140409|ref|ZP_05588671.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
 gi|83653631|gb|ABC37694.1| ferredoxin, 2Fe-2S [Burkholderia thailandensis E264]
          Length = 105

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 6   RHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V++      Y  +    ++EI+++    GQ
Sbjct: 64  EEGPVVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 98


>gi|226940659|ref|YP_002795733.1| ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9]
 gi|226715586|gb|ACO74724.1| Probable ferredoxin 2fe-2s protein [Laribacter hongkongensis HLHK9]
          Length = 106

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144
            HV  C          C  RG  +L++  ++   ++  K       G +  ++  C   C
Sbjct: 6   HHVFFCTNQREGGKDCCNNRGASELLDYAKDRIRELGLKGA-----GGVRVQKAGCLDRC 60

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P++++   +  Y  +  + ++EII+ 
Sbjct: 61  DYGPVLVVYPDETWYTYVDRDDIDEIINE 89


>gi|78184265|ref|YP_376700.1| putative ferredoxin like protein [Synechococcus sp. CC9902]
 gi|78168559|gb|ABB25656.1| putative ferredoxin like protein [Synechococcus sp. CC9902]
          Length = 119

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 87  LSPVGTRAHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVE 139
           ++P     H+ +C T      C         +  +    ++  +   R  +G +   +V+
Sbjct: 1   MTPAKISHHLLLCATPSKAKCCDPAKGAATWDALKQGVKRLGLEAASR-PEGMVLRSKVD 59

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   C   P+++I      Y ++TP+R+E I+     G
Sbjct: 60  CLRICDRGPVLLIWPDGTWYGEVTPDRIERILTEHVIG 97


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVM 151
           +  + VC  T CM     K+++   + + +K  L +         +  C G C   P+V+
Sbjct: 4   KNTILVCAGTGCMSSSSLKILKRLEDLMAEKGILEQTK-----IVKTGCFGLCSVGPIVI 58

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           +      Y  +  E  + I++    G
Sbjct: 59  VYPEGAFYAHVQEEDADRIVNEHLIG 84


>gi|116071090|ref|ZP_01468359.1| putative ferredoxin like protein [Synechococcus sp. BL107]
 gi|116066495|gb|EAU72252.1| putative ferredoxin like protein [Synechococcus sp. BL107]
          Length = 119

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 87  LSPVGTRAHVQVCGTTP---CM--LRGCEKLIEVCR---NKIHQKPLHRN-SDGTLSWEE 137
           ++P     H+ +C T     C   ++G     +  +    ++  +    +  +G +   +
Sbjct: 1   MTPAKISHHLLLCATPSKAKCCDPVKGA-ATWDALKQGVKRLGLEA--TSRPEGMVLRSK 57

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           V+C   C   P+++I      Y ++TP+R+E I+     G
Sbjct: 58  VDCLRICDRGPVLLIWPDGTWYGEVTPDRIERILTEHVIG 97


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           V VCG   C+  G E+L+   + ++  K +    DG +  +   C G C +   V+I   
Sbjct: 28  VLVCGGPGCLPLGSEELVAAFKAEMEAKGI----DGKVILKTTGCHGLCSHGVRVLIRPQ 83

Query: 154 KDTYEDLTPERLEEIID 170
           +  Y+ + PE + EI+D
Sbjct: 84  EIAYQKVQPEDVAEIVD 100


>gi|167835254|ref|ZP_02462137.1| ferredoxin family protein [Burkholderia thailandensis MSMB43]
          Length = 109

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 10  RHHVFFCLNQREKDAERPSCANCGAQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V++      Y  +    ++EI+++    GQ
Sbjct: 68  EEGPVVVVYPEGTWYTYVDKSDIDEIVESHLRDGQ 102


>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
            + +CG T CM    ++L E     +    L       +      C G C   P+V  M 
Sbjct: 5   KIYICGGTGCMSSKSKRLKENIEAILASNHLED----KVEVRLTGCFGFCEKGPIVKIMP 60

Query: 153 GKDTYEDLTPERLEEIID 170
               Y ++ P    EI++
Sbjct: 61  DNTFYTEVNPRDAIEIVE 78


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + VC    C+  G   +I   + ++    L       ++ +   C G C   P+VM
Sbjct: 24  AKPCISVCAGAGCLASGAADVIAAFKTELEFHNL-TTE---VNTKGTGCPGFCERGPIVM 79

Query: 152 I--GKDTYEDLTPERLEEII 169
           I   +  Y  + PE + EI+
Sbjct: 80  IYPEEICYLQVKPEDVPEIV 99


>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 594

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MI 152
            + +CG T CM    ++L E     +    L       +      C G C   P+V  M 
Sbjct: 5   KIYICGGTGCMSSKSKRLKENIEAILASNHLED----KVEVRLTGCFGFCEKGPIVKIMP 60

Query: 153 GKDTYEDLTPERLEEIID 170
               Y ++ P    EI++
Sbjct: 61  DNTFYTEVNPRDAIEIVE 78


>gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414]
 gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414]
          Length = 533

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAPMV 150
             ++ C    C+    + + +              ++     +    V C   C   P+V
Sbjct: 20  VQIRCCIAAACLATNSQAVKQSLEEA-------VTAENLAEQVEVYGVGCMRLCCQGPLV 72

Query: 151 MIGKDT--------YEDLTPERLEEIIDAFSTGQ 176
            + K+T        YE +TP+    II A + G+
Sbjct: 73  QVEKNTEPESTSTLYEKVTPDDAPSIITALNGGE 106


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VC    C+   C+ +       I  + L       +   E  C G C   P+V+I
Sbjct: 5   RSHVLVCAGAGCISSDCKAVQSALIANIQAQGLKD----EIKVVETGCMGPCDLGPVVLI 60

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  L PE   +I+ +    G+
Sbjct: 61  FPDGVFYRKLKPEDTADIVTEHLLKGK 87


>gi|121535571|ref|ZP_01667378.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
 gi|121305811|gb|EAX46746.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
          Length = 80

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + +C  + C LRG   ++      I +  +  N D     E   CQG C    ++ I 
Sbjct: 2   VKLSICIGSACHLRGAHGVLSAFNALIDKYQVQSNVD----LEGSFCQGKCTEGVVIKID 57

Query: 154 KDTYEDLTPERLEEI 168
            +   ++T +++ +I
Sbjct: 58  DEVITNVTKDKVYDI 72


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN------SDGTLSWEEVE 139
           +     ++  + VC  T C  +G  K+ E  +  + ++ L  +       D     ++  
Sbjct: 18  KRKEKLSKLSIYVCVGTGCTAKGALKVYEEFQRVLLREGLLNSVKLAKIEDSENPLKKTG 77

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           C G C N P+V I      Y  +T   +E+I++     G+
Sbjct: 78  CCGRCSNGPLVNILPHGYFYSHVTVNDVEKIVEKTIKRGE 117


>gi|301058538|ref|ZP_07199545.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2]
 gi|300447384|gb|EFK11142.1| putative ferredoxin, 2Fe-2S [delta proteobacterium NaphS2]
          Length = 101

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ VC +          C  +G   LI     +I    L R  D  L+     C   C 
Sbjct: 6   HHIFVCSSFRASGEVKGKCSKKGSSDLIPYIEGEI----LDRGLDALLT--STGCMKQCD 59

Query: 146 NAPMVMIGKDT--YEDLTPER-LEEIIDAFSTG 175
           N P+++I  +   Y ++T E  ++EI+DA   G
Sbjct: 60  NGPVMVIYPENLWYGNVTSEEIVDEILDALEDG 92


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNS-DGTLSWEEVECQGACVNAP 148
            + VC  T C+  G  ++ +  + K     +  K       +  ++ +   C G C   P
Sbjct: 25  RILVCAGTGCVAGGSLEIFDELKKKVENLSLPVKVGLLEEKESNVTVKTSGCHGFCEKGP 84

Query: 149 MVMIG--KDTYEDLTPERLEEII-DAFSTGQ 176
           +V I      +  ++ + ++EII D    G+
Sbjct: 85  LVKIEPLGILFTKVSQDDVDEIINDTIKAGK 115


>gi|78189218|ref|YP_379556.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
 gi|78171417|gb|ABB28513.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
          Length = 102

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC       TP   C  +    LI    +++  + +   SD  ++     C   
Sbjct: 4   PKHHILVCASFRAQGTPQGICHKKNSLALIPYLESELADRGM---SD--VTVSATGCLNL 58

Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176
           C   P++++        E  + E+++EI+DA   G+
Sbjct: 59  CEKGPVLVVYPENFWYGEIDSEEKIDEILDALEEGE 94


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGT 132
            +       +  V VC  T C+  G  ++ E               ++ ++P     D T
Sbjct: 14  MYSRYLKAEKRRVLVCAGTGCVSGGSMEIFERLSELVSKRGMDCQVELKEEPH----DNT 69

Query: 133 LSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           +  ++  C G C   P+V I      Y  +  E  EEI+D 
Sbjct: 70  IGMKKSGCHGFCEMGPLVRIEPEGYLYTKVKLEDCEEIVDR 110


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +R  + VC  T C   G  KL++  R+++ ++ L       +  +E  C G C    +V+
Sbjct: 24  SRPCITVCCGTGCRALGSVKLVDAFRSELAKQGLE----NQVDIKETGCHGFCEKGSVVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
           I      Y  +  E   ++I+        TI+ G  ++R + + PA G
Sbjct: 80  IYPQNICYFHVKSEDAADVIEK-------TIKTGELVERLLYADPATG 120


>gi|323486585|ref|ZP_08091906.1| hypothetical protein HMPREF9474_03657 [Clostridium symbiosum
           WAL-14163]
 gi|323399966|gb|EGA92343.1| hypothetical protein HMPREF9474_03657 [Clostridium symbiosum
           WAL-14163]
          Length = 125

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 20  EESAIWVNEVISRYPPSRCQSA---VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           E     + E++S Y      S+   ++ ++   QE  GW+S    E+ A    +    + 
Sbjct: 23  ERREEELKEILSYYSSMTSPSSQENIVSMMQEIQELYGWISAEHKEMAAEAAGVKLSVID 82

Query: 77  EIATFYTQFQLSPVGTRAHVQVCGT 101
            I   Y    L P   R  +  C  
Sbjct: 83  CIMKLYK--SLKPAPYRHRMTFCTG 105


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---------IHQKPLHRNSDGTLSWEEVEC 140
            G R  + VC  T C+  G +K++     +         +  KP   + DG +      C
Sbjct: 21  AGQRRVI-VCAGTGCVANGSKKVLAALETQMAEAGLDVVLEFKP-EGHGDG-VRLSHSGC 77

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIID-AFSTGQ 176
           QG C   P+V I      Y  +  E + +I+D     G+
Sbjct: 78  QGFCQMGPLVTILPENTLYTKVAVEDVPDIVDLTLKKGE 116


>gi|225849631|ref|YP_002729865.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1]
 gi|225644814|gb|ACO03000.1| ferredoxin, 2Fe-2S (2FeCpFd) [Persephonella marina EX-H1]
          Length = 109

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 95  HVQVCG-----TTP-CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV VC        P C  +G + + +  + ++  K L       ++     C G C+  P
Sbjct: 7   HVFVCLQRKPPGMPNCGEKGADMIFQKFQEELMMKNLFD----KMAVTPTGCMGPCMMGP 62

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            V++      Y ++ PE + EII+    G     R
Sbjct: 63  TVVVYPDAVWYGNVKPEDVPEIIEKHILGGEPVER 97


>gi|303242582|ref|ZP_07329059.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302589886|gb|EFL59657.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 80

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++IE  +N I    L       +      C   CVN   V IG 
Sbjct: 2   KVAICIGSSCHLKGSRQIIEQLQNMIAANNLEE----KIELCGAFCMKNCVNGVSVTIGD 57

Query: 155 DTYEDLTPERLEEIID 170
           + +  +TPE  +   +
Sbjct: 58  ELFS-VTPENAKNFFE 72


>gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 533

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK- 154
           ++ C    C+  G + + E     +    L +     +    V C   C + P+V I + 
Sbjct: 22  IRCCTAAGCLSSGSQAVKENLLTSLKAAGLEQ----QVEVVGVGCMRLCCHGPLVEIDEN 77

Query: 155 -----DTYEDLTPERLEEIIDAFSTGQGDTIR 181
                  Y+ +TP+   ++ID+   G+  T++
Sbjct: 78  KSHKIKLYQQVTPQDAPKVIDSIK-GKNTTLK 108


>gi|119485426|ref|ZP_01619754.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106]
 gi|119457182|gb|EAW38308.1| hypothetical protein L8106_09801 [Lyngbya sp. PCC 8106]
          Length = 99

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V VC    C  +G  +++   + +                E   C G C N PMV+I  
Sbjct: 8   KVLVCQNRTCRKQGSAQVLAAFQAEPIPDVG---------IEATGCLGQCGNGPMVIILP 58

Query: 153 GKDTYEDLTPERLEEIID 170
            +  Y  + PE +  I++
Sbjct: 59  EEVWYNRIQPEEVPTIVE 76


>gi|332298932|ref|YP_004440854.1| hypothetical protein Trebr_2314 [Treponema brennaborense DSM 12168]
 gi|332182035|gb|AEE17723.1| hypothetical protein Trebr_2314 [Treponema brennaborense DSM 12168]
          Length = 84

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 16/91 (17%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC-----QGACVNA 147
           + HV +C  T C + G  +++ +   ++  +       G +  E + C        C  A
Sbjct: 3   KIHVSICTGTACFVMGASEIM-LLEEQLPPELQ-----GRVEIEGITCFDKCKNAECGKA 56

Query: 148 PMVMIGKDTYEDLTPE-RLEEIIDAFSTGQG 177
           P V I  +T     PE  L  +ID      G
Sbjct: 57  PFVQINGETI----PEASLVTVIDRIRELAG 83


>gi|224824990|ref|ZP_03698096.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002]
 gi|224602661|gb|EEG08838.1| putative ferredoxin 2Fe-2S protein [Lutiella nitroferrum 2002]
          Length = 102

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C          C   G   L+   +++   K L    +G +   +  C G C + P
Sbjct: 7   HVFICCNQRAEGEGCCADFGTPALLGYMKDR--VKALGLAGEGQVRVNKAGCLGRCDDGP 64

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           ++++   +  Y  +  + L+EIID+
Sbjct: 65  VMVVYPQETWYTFVDKDDLDEIIDS 89


>gi|217076869|ref|YP_002334585.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B]
 gi|217036722|gb|ACJ75244.1| Fe-hydrogenase, subunit alpha [Thermosipho africanus TCF52B]
          Length = 75

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C  + C L+G  +++E  +  ++ +         +      C G C N   + I  
Sbjct: 2   VIKICMGSSCHLKGSYEVVEKIKE-MNLEG--------VKLYGSLCFGKCANGINIEIDG 52

Query: 155 DTYEDLTPERLEEIIDA-FSTGQ 176
                +TP+ ++E I+     G 
Sbjct: 53  VLISSVTPDNVKEKIEKFLKEGN 75


>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
 gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 320

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAP 148
           G +  + VC  T C+ +    + E  R+KIH        D  +S       C G C   P
Sbjct: 2   GNKKKIYVCCGTGCIAKNSMSIFEEFRDKIH----EMEIDAEVSAKLTSSVCSGICDKGP 57

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           +V I      Y  +  + +EEII  
Sbjct: 58  VVKIYPNITYYG-VKIKDVEEIIQR 81


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 82  YTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           YT           H+ VCG T C+     ++++      H +    +    +   +  C 
Sbjct: 4   YTM----------HILVCGGTGCLSSQSNEIVDQLIA--HIEEAGMSE--EVQVLKTGCF 49

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           G C   P+V I      Y  + PE  EEI+  
Sbjct: 50  GFCEKGPIVKILPDNTFYVQVKPEDAEEIVKE 81


>gi|254423540|ref|ZP_05037258.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335]
 gi|196191029|gb|EDX85993.1| hypothetical protein S7335_3696 [Synechococcus sp. PCC 7335]
          Length = 250

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            P   +  + VC  + C  RG  +L+      +    L       +  +   CQ  C  A
Sbjct: 163 RPARQKQRILVCHKSGCNKRGGRQLVSALEQALQTYQLQD----RVEIQYTGCQKCCSKA 218

Query: 148 P--MVMIGKDTYEDLTPERLEEIIDA 171
           P   +M GK  Y  L P+ L  +I+ 
Sbjct: 219 PGLTIMPGKHRYYGLNPQDLPSLIEK 244


>gi|238028747|ref|YP_002912978.1| Ferredoxin-like protein [Burkholderia glumae BGR1]
 gi|237877941|gb|ACR30274.1| Ferredoxin-like protein [Burkholderia glumae BGR1]
          Length = 107

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C          + C     + + E  + +   K L     G +   +  C   C
Sbjct: 8   RHHVFFCLNQRDPGADRSSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRC 65

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P++++      Y  +  + ++EI+++    G+
Sbjct: 66  EEGPVMVVYPEGTWYTYVDKQDIDEIVESHLRDGK 100


>gi|52080317|ref|YP_079108.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
 gi|52785692|ref|YP_091521.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52003528|gb|AAU23470.1| hypothetical protein BL05167 [Bacillus licheniformis ATCC 14580]
 gi|52348194|gb|AAU40828.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Bacillus
           licheniformis ATCC 14580]
          Length = 128

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + H+ +C  + C   G E+L +V R +I  + L    D  +      C G C +   V I
Sbjct: 10  KHHIFICNGSSCNRAGAEELTQVIRQEISDREL----DDFIHTTRTRCNGRCQDK-CVAI 64

Query: 153 G---KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTS 199
                  Y DL PE +  +ID+  T +    +     D      + G+ S
Sbjct: 65  HYPRGTWYRDLKPEDVPLLIDSLCTNEDYKEKASHLYDGQRFERSSGVIS 114


>gi|295704477|ref|YP_003597552.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
 gi|294802136|gb|ADF39202.1| ferredoxin, 2Fe-2S (2FeCpFd) [Bacillus megaterium DSM 319]
          Length = 130

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL----HRNSDGTLSWEEVECQGACVNA 147
           T+ HV +C  + C   G E++ +  R++I  + L    H             C G C + 
Sbjct: 9   TKHHVLICNGSSCNRFGAEEVTQAIRSEIANQELDPYIHTT--------RTRCNGRCHDK 60

Query: 148 PMVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            +V+       Y+D+ P+  +E+I++    Q    +
Sbjct: 61  CVVISYPDGIWYKDVKPQDAQELINSLKKDQPFVEK 96


>gi|239628145|ref|ZP_04671176.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518291|gb|EEQ58157.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 79

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++I   +               +      C G C +   V +  
Sbjct: 2   KVTICIGSACHLKGSREIIAKLQKL----VAENGLSDQVDLNGAFCTGNCDHGVCVTVEG 57

Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
           + Y  L PE  EE  +    G+
Sbjct: 58  ELYS-LKPEDTEEFFENEIKGR 78


>gi|113475882|ref|YP_721943.1| hypothetical protein Tery_2241 [Trichodesmium erythraeum IMS101]
 gi|110166930|gb|ABG51470.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 109

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  V VC    C+ +  +++++  + +             +  E   C G C  +P V
Sbjct: 14  GDRY-VFVCQNHSCLRQNSQEVLKAFKAETENLVG-------VYIESSSCLGQCSISPTV 65

Query: 151 MI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            I   +  Y  + PE +  I+     G    
Sbjct: 66  RIIPDEIWYYRVQPEHVPLIVTQHFVGNKPV 96


>gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4]
          Length = 538

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V  C +T C       + +     +    L       +    V C G C   P+V I  
Sbjct: 21  RVHCCTSTGCQAANSLAVKKEMEQAVKTAGLQD----KIEVVGVGCMGFCGKGPIVEIEP 76

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
               YE + PE    IID  + G+     PG
Sbjct: 77  QGLQYEVVKPEVAASIIDGLNGGEVKA-TPG 106


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            V+VC  T C+  G E+     + +I     K                CQG C  AP++ 
Sbjct: 27  VVKVCQGTGCLAAGAEETFRAFQEEIARQGVKA---------QVIPTGCQGFCQGAPVIT 77

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP---GPQIDRISSAPAG 195
           +         +T   + +I+D      G+ ++     PQ  +I   P  
Sbjct: 78  VEPRGWFLHRITAADVPKIVDVVLKRGGELVQHFYRDPQTGKICRRPED 126


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
              +  + VCG T C       +I   +N+I    +       +      C G C   P+
Sbjct: 31  KNMKRSILVCGGTGCHASKSLDVISTLKNEIKNAGIE----NEVDVISTGCFGFCEKGPI 86

Query: 150 VMI--GKDTYEDLTPERLEEII 169
           V +      Y ++T E+ + I+
Sbjct: 87  VKVVPDNVFYVEVTAEKAKLIV 108


>gi|150016878|ref|YP_001309132.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052]
 gi|49617542|gb|AAT67466.1| hypothetical 2Fe2S ferredoxin [Clostridium beijerinckii]
 gi|149903343|gb|ABR34176.1| ferredoxin, 2Fe-2S [Clostridium beijerinckii NCIMB 8052]
          Length = 102

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ--KPLHRNSD----GTLSWEEVECQGACVN 146
           + H+ VC    C + G +K +   ++ +    K +    D      +      C G C  
Sbjct: 5   KHHIFVC--ASCRVNGMQKGMCYSKDSVKVVQKFMEEVEDRDLINEVMVTNTGCLGVCNK 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+V++      Y ++  E +E I++    G
Sbjct: 63  GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V VCG T C+  G +++ +V   ++ ++ +              CQG C   P++ +  
Sbjct: 2   RVLVCGGTGCVTSGSQEVKDVLETELEKENIQ-----DYKVIFTGCQGFCEQGPLIRVEQ 56

Query: 153 GKDTYEDLTPERLEEII 169
            +  Y ++  E  ++I+
Sbjct: 57  DETFYCNVDAEGAKKIV 73


>gi|315505069|ref|YP_004083956.1| ferredoxin [Micromonospora sp. L5]
 gi|315411688|gb|ADU09805.1| ferredoxin [Micromonospora sp. L5]
          Length = 214

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R H+ +C    C  RG ++        +  +    ++D  ++  +  C   C + P+ ++
Sbjct: 115 RHHLLLCRGPRCSARGADETYRAIVGAL-VEQQLTDADVLMA--QTGCLFPCNHGPVAVV 171

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
                 Y  + P     ++ +    G+
Sbjct: 172 HPDGTWYGPVRPGDAARLVGEHLRAGR 198


>gi|219848576|ref|YP_002463009.1| hypothetical protein Cagg_1672 [Chloroflexus aggregans DSM 9485]
 gi|219542835|gb|ACL24573.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 80

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 102 TPCML--RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYED 159
           T C L  R    L +         P        L   E++C  AC + P VMI  D +  
Sbjct: 7   TVCRLCARSRPDLWQTLARLRANHPGE------LRVVELDCMAACDDVPAVMIDFDYFPR 60

Query: 160 LTPERLEEIIDA 171
           +TP++L E++ +
Sbjct: 61  VTPQQLIELVQS 72


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E++IE  R  + Q  L              C G C   P+V MI  
Sbjct: 8   ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62

Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176
              Y  + P   +EI+ +    G+
Sbjct: 63  NTFYVQVQPSDADEIVREHLVKGR 86


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E++IE  R  + Q  L              C G C   P+V MI  
Sbjct: 8   ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62

Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176
              Y  + P   +EI+ +    G+
Sbjct: 63  NTFYVQVQPSDADEIVREHLVKGR 86


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E++IE  R  + Q  L              C G C   P+V MI  
Sbjct: 8   ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62

Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176
              Y  + P   +EI+ +    G+
Sbjct: 63  NTFYVQVQPSDADEIVREHLVKGR 86


>gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum]
          Length = 538

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 13/97 (13%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            Q++         V+VC    C       ++E  +             G+   + V C G
Sbjct: 11  AQYRNEDAHIEREVRVCVAASCQSAAAVPVLEALK-----SACDTQGAGSCKVKGVGCMG 65

Query: 143 ACVNAPMVMIGKD--------TYEDLTPERLEEIIDA 171
            C   P+V +            Y D+TP+   +I+ +
Sbjct: 66  LCSAGPLVAVADKDCALNESALYRDVTPDDAPDIMAS 102


>gi|317127563|ref|YP_004093845.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
           2522]
 gi|315472511|gb|ADU29114.1| hypothetical protein Bcell_0836 [Bacillus cellulosilyticus DSM
           2522]
          Length = 133

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 16/95 (16%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIH----QKPLHRNSDGTLSWEEVECQGACVNAPM 149
            H+ +C    CM  G E+L++  RN+I      K +H +     +     C G C +   
Sbjct: 11  HHLLICNGGSCMKAGAEELVQAVRNEIGKMDVHKRVHTSR----TL----CNGRCHDK-C 61

Query: 150 VMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           V+I       Y+ +T      +I++  TG+  T +
Sbjct: 62  VLISYPDGYWYKGMTSADASNLIESLLTGKVMTEK 96


>gi|239817883|ref|YP_002946793.1| ferredoxin-like protein [Variovorax paradoxus S110]
 gi|239804460|gb|ACS21527.1| ferredoxin-like protein [Variovorax paradoxus S110]
          Length = 117

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 89  PVGTR-AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           P G    H+  C          C L   +   + C+ K   K       G +   +  C 
Sbjct: 9   PRGYYGRHIFFCLNERKNGEDCCALHNAQAGFDRCKAK--VKEAGLAGPGKVRVNKAGCL 66

Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   P+ ++  +   Y  +  + ++EI+D+    GQ
Sbjct: 67  DRCAGGPVAVVYPEAVWYTFVDADDIDEIVDSHLKNGQ 104


>gi|218513055|ref|ZP_03509895.1| formate dehydrogenase subunit gamma [Rhizobium etli 8C-3]
          Length = 42

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 134 SWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           + E V C G C  AP  M+  + Y  +  +   E++     
Sbjct: 2   TLEAVYCLGLCACAPSAMLDGEVYGRVDDQLATELVAEARR 42


>gi|288960155|ref|YP_003450495.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
 gi|288912463|dbj|BAI73951.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
          Length = 110

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 89  PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   R HV  C            C  +G   L +    K   +       G        C
Sbjct: 6   PQTFRHHVFCCAQQRPPGHPRGSCAAKGAHPLWQRLDQK--IQGQGLTDIGMA---MTGC 60

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            G C   P++++      Y   TPE ++EI+D+
Sbjct: 61  LGFCSAGPLMVVYPEGIWYRPETPEDIDEIVDS 93


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEV----CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            V VC  T CM  G +K+ +     C++    K   +     L   +  CQG C   P++
Sbjct: 26  RVLVCSGTGCMASGAQKIYDEMSLLCKDLEGVKIEMQKDLPHLGVVKTGCQGLCELGPLM 85

Query: 151 MIG--KDTYEDLTPERLEEIIDA 171
            I      Y  + PE   EI++ 
Sbjct: 86  RIEPYNYQYVKVQPEDCREIVEK 108


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN----SDGTLSWEEVECQGACVNAP--M 149
           V VC  T C  +G  K+ E  +    +  ++ N     D      +  C G C + P  +
Sbjct: 28  VYVCVGTGCAAKGSLKVYEALKKIFKENNVNVNLQKLDDNEERVRKTGCCGRCSSGPWVI 87

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR-ISSAPAGG 196
           VM     Y ++ PE ++EI +       +TI  G  ++R + + PA G
Sbjct: 88  VMPYGYFYSEVKPEDVKEIYE-------ETILKGKPVERLLFTDPATG 128


>gi|186680959|ref|YP_001864155.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc
           punctiforme PCC 73102]
 gi|186463411|gb|ACC79212.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc
           punctiforme PCC 73102]
          Length = 180

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   +A + VC    C+ RG + L+      +            ++ E   CQ  C +AP
Sbjct: 96  PPQIKARIMVCQKGGCLKRGGKGLLSDLEKTL-CDRGLL---DKVTIEHTSCQKCCNSAP 151

Query: 149 --MVMIGKDTYEDLTPERLEEIIDA 171
             ++ +GK  Y+++ P+ +  ++++
Sbjct: 152 NCVLHLGKKKYKNIHPDAIASLLES 176


>gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
 gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
          Length = 550

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + +C    C+  G  +L    + ++ ++ L    D  +  + V C G C   P+V + 
Sbjct: 24  HQLNICVAAGCLSCGSGELKTALQEEVARRGL----DKQVCVKGVGCLGLCSAGPLVALA 79

Query: 154 KD--TYEDLTPERLEEIIDAF 172
                Y+   P  +E I+DA 
Sbjct: 80  SKNVLYQGCGPADVETILDAL 100


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +CG T C   GC+++ +    ++ +  L       +      C G C   P+V++
Sbjct: 5   RSHVLICGGTGCSSSGCQQVQDKFNEELDKHNL----SNEVKLIITGCHGLCELGPIVIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                +Y  ++ E + EI++ 
Sbjct: 61  YPEGTSYFTVSAEDVSEIVEE 81


>gi|193212204|ref|YP_001998157.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
 gi|193085681|gb|ACF10957.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
          Length = 100

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           AHV +C          C     + L    +  +  K       G +      C G C   
Sbjct: 11  AHVFICTNDRKGERKSCADGDSQLLKAKLKEAVDAKGWK----GKVRVSTSGCLGVCGEG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEII 169
           P VMI   K  +  +TP+ ++EI+
Sbjct: 67  PNVMIYPQKLWFSGVTPDDVDEIL 90


>gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
          Length = 623

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           A + +C  T C   G +K+ +    ++ +  L       +      C G C   P+V+I 
Sbjct: 31  AVIAICCGTGCQAYGAKKVADAFEEELAKAGLGD----KVEVRTPGCHGFCERGPLVVIR 86

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y+ L    + EII+ 
Sbjct: 87  PQNIFYQRLKISDIPEIIEK 106


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           H+ +C  T C+     ++ +     I            +      C G C   P+++I  
Sbjct: 6   HILICHGTACVSSESREVYKALEKAI----DEAGLADQVRILHTGCFGFCARGPIILIHP 61

Query: 153 GKDTYEDLTPERLEEIIDA 171
           G   Y +++   ++EI++ 
Sbjct: 62  GGVMYCEVSVGDVKEIVEE 80


>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 622

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 19/130 (14%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            G+R H+ +   T   + G   ++E       ++  +             +V C G C  
Sbjct: 23  AGSRPHILIGTATCGKVAGAMSVLEAVEATLQRLGIEADIT---------QVGCFGMCYA 73

Query: 147 APMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201
            P V I      + +Y  +TPE+   +I+ +  G     RP   +  I      GL SL 
Sbjct: 74  EPTVDIALPGQPRISYGYMTPEKATRVIEDYIAG--GDPRPDLALCTIGEGRVDGLPSLE 131

Query: 202 DNNSKKRGKK 211
           +    +  ++
Sbjct: 132 EMPMYRAQRR 141


>gi|89054741|ref|YP_510192.1| hypothetical protein Jann_2250 [Jannaschia sp. CCS1]
 gi|88864290|gb|ABD55167.1| hypothetical protein Jann_2250 [Jannaschia sp. CCS1]
          Length = 249

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   R HV VC    C LR    L+ + + +     L    D  ++     C   C   P
Sbjct: 146 PPAHRHHVLVCTGPRCHLRDAPDLLGLLKAE--ITHLSLGDDCLVT--ATGCLFPCNAGP 201

Query: 149 MVMI 152
           +V++
Sbjct: 202 VVVV 205


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVC-----RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           + VC  T C   G  K+ +       +  +  K      D +    +  C G C   P+V
Sbjct: 28  IYVCVGTGCTANGSRKVYKKFVEVIRKKGLDVKV-ETIDDESDVVRKTGCCGLCSLGPLV 86

Query: 151 --MIGKDTYEDLTPERLEEIIDA 171
             M    TY  +  + +EEI++ 
Sbjct: 87  KIMPEGITYSHVRLDDVEEIVEK 109


>gi|172035448|ref|YP_001801949.1| hypothetical protein cce_0532 [Cyanothece sp. ATCC 51142]
 gi|171696902|gb|ACB49883.1| hypothetical protein cce_0532 [Cyanothece sp. ATCC 51142]
          Length = 94

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VC    C   G +K++    +         + D  +      C G C N P ++I   
Sbjct: 23  ILVCQGRCCRKDGSKKILTALES-------QTSGD--IKVMPCGCLGQCGNGPNIIILPE 73

Query: 154 KDTYEDLTPERL 165
           +  Y+ ++P+ +
Sbjct: 74  EKLYQRVSPKDV 85


>gi|269792194|ref|YP_003317098.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099829|gb|ACZ18816.1| hypothetical protein Taci_0580 [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 104

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII-DAF 172
           ++     C GAC   P+V      Y  +TPE+L  I+ +A+
Sbjct: 63  VTVRRSSCLGACSQPPVVEFRGKVYASMTPEKLRSILREAY 103


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQG 142
           G +  V +C  T C+  G  K+    + ++ +K L          ++ G  ++    CQG
Sbjct: 16  GAQRRVVICAGTGCVANGAMKVHAAFQQRMAEKNLPFVLELREENDNSGKTAFTRSGCQG 75

Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
            C   P+V +      Y  + P  ++EII+    G G   R       + S P  G
Sbjct: 76  FCQMGPLVTVLPENILYTQVKPADIDEIIETSLIGGGVVER------LLYSEPGNG 125


>gi|150021056|ref|YP_001306410.1| ferredoxin-like protein [Thermosipho melanesiensis BI429]
 gi|149793577|gb|ABR31025.1| Ferredoxin-like protein [Thermosipho melanesiensis BI429]
          Length = 125

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           ++   G R  + V   T  +  G +  +      ++      N D  +S  +  C G C 
Sbjct: 22  KMREEGKRGKITVAMGTCGIAAGAKDTLNAIVETLN----ELNID-DISVVQSGCMGLCE 76

Query: 146 NAPMVMI--GKDT---YEDLTPERLEEIIDA 171
             P + +    D    Y  +TPE  + II +
Sbjct: 77  VEPTIKVELDDDVPVIYGHVTPENAKRIIKS 107


>gi|219851218|ref|YP_002465650.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c]
 gi|219545477|gb|ACL15927.1| ferredoxin, 2Fe-2S [Methanosphaerula palustris E1-9c]
          Length = 102

 Score = 49.0 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 94  AHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C ++         C  +    ++     +   +     ++  ++     C G C 
Sbjct: 6   HHIFICTSSRPTGQQKGFCHNKEGVDVMMRFMEE--IEDRELGNEVFIT--NTGCFGICE 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
             P+V++      Y  +TP+ + EI+D    G
Sbjct: 62  KGPIVVVYPDNIWYGSVTPDDVGEILDEHIEG 93


>gi|125972946|ref|YP_001036856.1| hypothetical protein Cthe_0425 [Clostridium thermocellum ATCC
           27405]
 gi|256005702|ref|ZP_05430658.1| hypothetical protein ClothDRAFT_2519 [Clostridium thermocellum DSM
           2360]
 gi|281417157|ref|ZP_06248177.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|125713171|gb|ABN51663.1| NADH dehydrogenase subunit E [Clostridium thermocellum ATCC 27405]
 gi|255990333|gb|EEU00459.1| hypothetical protein ClothDRAFT_2519 [Clostridium thermocellum DSM
           2360]
 gi|281408559|gb|EFB38817.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|316940818|gb|ADU74852.1| hypothetical protein Clo1313_1796 [Clostridium thermocellum DSM
           1313]
          Length = 81

 Score = 49.0 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 16/86 (18%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            V +C  + C L+G ++++E  ++     + K         +      C   CVN   V 
Sbjct: 2   KVSICIGSSCHLKGAKQIVEQLQSLVADYNLKE-------KVELGGAFCMKNCVNGVSVT 54

Query: 152 IGKDTYEDLTPERLE-----EIIDAF 172
           +    +  +TPE ++     EI+   
Sbjct: 55  VDDKLFS-VTPENVKSFFETEILKKL 79


>gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101]
          Length = 521

 Score = 49.0 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
           A +++C    C  RG  +L+E CR  +       +    L  +EV C G C + P++ I 
Sbjct: 3   ACLRLCTAASCRSRGATELLEHCRKALA------SDQAQLRVKEVGCLGPCSDGPLLAID 56


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score = 49.0 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E++IE  R  + Q  L              C G C   P+V MI  
Sbjct: 8   ILVCGGTGCRASQSEQIIENLRAAVEQYGLEDTQ-----VIRTGCFGFCEKGPVVKMIPD 62

Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176
              Y  + P   +EI+ +    G+
Sbjct: 63  NTFYVQVQPSDTDEIVREHLVKGR 86


>gi|160895832|ref|YP_001561414.1| ferredoxin-like protein [Delftia acidovorans SPH-1]
 gi|160361416|gb|ABX33029.1| ferredoxin-like protein [Delftia acidovorans SPH-1]
          Length = 124

 Score = 49.0 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 14/111 (12%)

Query: 90  VGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
            G     H+  C          C L G +   + C+ +   K L     G +   +  C 
Sbjct: 16  AGNYYARHIFFCLNERPNGEDCCALHGAKAGFDHCKKQ--VKQLGLAGKGQVRVNKAGCL 73

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG-DTIRPGPQIDR 188
             C   P+ ++      Y  +    ++EI+++    GQ  + +   P + R
Sbjct: 74  DRCAGGPVAVVYPEGTWYTFVDESDIDEIVESHLKNGQPVERLLLPPDVGR 124


>gi|269925972|ref|YP_003322595.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789632|gb|ACZ41773.1| Ferredoxin-like protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 113

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  V +C    C  R   +LI V    +  + L     G +      C   C   P ++I
Sbjct: 2   KYSVAICAGADCSKRNTSQLITVLEQALRDEGLE----GDVLLRPAACSKLCELGPTLII 57

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQ 176
              +  Y  +TPERL+ I+ +    G 
Sbjct: 58  YPDRVWYGGVTPERLQRIVREHLKYGN 84


>gi|253997648|ref|YP_003049712.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8]
 gi|253984327|gb|ACT49185.1| putative ferredoxin 2Fe-2S protein [Methylotenera mobilis JLW8]
          Length = 102

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          CM  G E+  +  +++   K L+ N  G +      C   C + 
Sbjct: 6   YHVFFCLNQREGGAACCMDHGAEQAFDHMKSR--VKKLNLNGAGKVRINRAGCLDRCNDG 63

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P++++      Y  +  + ++EI+D+
Sbjct: 64  PVMVVYPQAVWYTFVDNDDIDEIVDS 89


>gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 575

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG T C+    +K+I+     +  K    +    +      C G C   P++ I   
Sbjct: 35  ILVCGGTGCLASDSDKVIKNLGAIL--KAKGLSE--QVQVIRTGCFGFCEQGPIIKIEPD 90

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  + P+  +EII+ 
Sbjct: 91  NVFYVRVKPKDAKEIIEQ 108


>gi|163782063|ref|ZP_02177062.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882595|gb|EDP76100.1| ferredoxin, 2Fe-2S [Hydrogenivirga sp. 128-5-R1-1]
          Length = 110

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 95  HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGAC 144
           HV +C            C  +G  ++ +    K+ + P      +          C G C
Sbjct: 5   HVFICVNQRPPGHPQGSCAEKGSREVYQAFMEKLQEDPELFMSTA-----VTPTGCLGPC 59

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
           +  P +++      Y ++  E +EEII +    G+
Sbjct: 60  MMGPTMVVYPEGIWYGNVKVEDVEEIIREHLKGGK 94


>gi|254000281|ref|YP_003052344.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4]
 gi|253986960|gb|ACT51817.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. SIP3-4]
          Length = 110

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C       + C    G E   +  +++   K L  +  G +      C   C   
Sbjct: 12  HHVFFCLNKREDGSDCCANHGAEAAFDYMKSR--IKKLKLSGKGNVRINRAGCLDRCSEG 69

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P+++I  +   Y  +  E ++EII++
Sbjct: 70  PLMVIYPEAVWYGFVDNEDIDEIIES 95


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + +C  T C+  G   ++   R         R     ++     C G C   P+V+
Sbjct: 68  RRWRLLLCAGTGCIASGGAPVVAALREV----VEERGMSNQVAIVLTGCHGFCEQGPIVV 123

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQGDTIR---PGPQIDRISSAPA 194
           +  G   Y  ++   + +I+D    G     R     P  + ++S P 
Sbjct: 124 VEPGNTFYRRVSAADVRDIVDTHLIGGQKVDRLLYRLPGGEAVASYPE 171


>gi|313202237|ref|YP_004040895.1| ferredoxin 2fe-2S protein [Methylovorus sp. MP688]
 gi|312441553|gb|ADQ85659.1| putative ferredoxin 2Fe-2S protein [Methylovorus sp. MP688]
          Length = 105

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C       + C    G E   +  +++   K L  +  G +      C   C   
Sbjct: 7   HHVFFCLNKREDGSDCCANHGAEAAFDYMKSR--IKKLKLSGKGNVRINRAGCLDRCSEG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P+++I  +   Y  +  E ++EII++
Sbjct: 65  PLMVIYPEAVWYGFVDNEDIDEIIES 90


>gi|294101230|ref|YP_003553088.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM
           12261]
 gi|293616210|gb|ADE56364.1| formate dehydrogenase subunit gamma [Aminobacterium colombiense DSM
           12261]
          Length = 97

 Score = 49.0 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 133 LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
           +  + V C GAC  +P+V    + Y  +T E+L  ++ ++ T
Sbjct: 55  VHIKLVSCLGACTASPVVEFKGEIYGHMTKEKLFALLRSYFT 96


>gi|225848008|ref|YP_002728171.1| ferredoxin 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644489|gb|ACN99539.1| ferredoxin, 2Fe-2S (2FeCpFd) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 108

 Score = 48.6 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL---SWEEVECQGACV 145
           HV VC          C  +G +++    +  +  K       G     +     C G C+
Sbjct: 6   HVFVCMQRKPPGMPSCGDKGSDQIFMKFQEALMTK-------GLFNKMAVTATGCLGPCM 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P V++      Y ++TP  +EEII  
Sbjct: 59  FGPNVVVYPDAIWYGNVTPADVEEIIQK 86


>gi|21674473|ref|NP_662538.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
 gi|21647662|gb|AAM72880.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
          Length = 100

 Score = 48.6 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV VC          C     + + +  +  +  K       G +      C G C   
Sbjct: 11  VHVFVCTNDRGGERKSCADNNSQLVKDQLKKAVDGKGWK----GKVRVSTSGCMGVCGEG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEII 169
           P VMI   K  +  ++P+ ++ ++
Sbjct: 67  PNVMIYPQKLWFSRVSPDDVDAVL 90


>gi|241661813|ref|YP_002980173.1| ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D]
 gi|240863840|gb|ACS61501.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12D]
          Length = 109

 Score = 48.6 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C   G + + E  + +   K L  N +G +   +  C   C   
Sbjct: 7   HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P++++  +   Y  +  E ++EII +
Sbjct: 65  PVMVVYPEAVWYTFVDKEDIDEIIQS 90


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 79  ATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV 138
            TFY          R H+ VCG   C   GC ++    R  + +K +       +   + 
Sbjct: 1   MTFY----------RGHLLVCGGEGCTSSGCNEVHGAFREAMRKKKIED----EIKIVQT 46

Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDT 179
            C G C   P+V++      Y  +  +   EI++     G+  T
Sbjct: 47  GCHGYCEKGPLVVVYPEGVMYNRVGVKDASEIVNEHLVKGKPVT 90


>gi|257452271|ref|ZP_05617570.1| hypothetical protein F3_04335 [Fusobacterium sp. 3_1_5R]
 gi|257465929|ref|ZP_05630240.1| hypothetical protein FgonA2_00585 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917085|ref|ZP_07913325.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058814|ref|ZP_07923299.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313684490|gb|EFS21325.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313690960|gb|EFS27795.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 69

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 12/75 (16%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V VC    C  +  +K+ E    +                EEV C G C   P V 
Sbjct: 2   EKKKVIVCRGMTCGKKN-QKMWEALSKREDII-----------LEEVRCFGQCKKGPNVK 49

Query: 152 IGKDTYEDLTPERLE 166
           I    Y  +  E++E
Sbjct: 50  IDGQIYHFMDLEKVE 64


>gi|108805721|ref|YP_645658.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941]
 gi|108766964|gb|ABG05846.1| hypothetical protein Rxyl_2936 [Rubrobacter xylanophilus DSM 9941]
          Length = 109

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           AHV +CG   C  RG +++ +V + ++  +    N D  +  + V+C G C + P  ++ 
Sbjct: 8   AHVLLCGGGDCKKRGSKEVRKVLKAEL--RAAGLNRD--VRVDSVDCLGFCKHGPNAVVY 63

Query: 153 -----GKDTYEDLTPERLEEIIDA-FSTGQ 176
                G   Y  L   ++ E++ A    G+
Sbjct: 64  GPNGHGGTWYLGLDEGKVPEVVSAHLKEGR 93


>gi|167561352|ref|ZP_02354268.1| ferredoxin family protein [Burkholderia oklahomensis EO147]
 gi|167568583|ref|ZP_02361457.1| ferredoxin family protein [Burkholderia oklahomensis C6786]
          Length = 109

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C   G +++ E  + +   K L     G +   +  C   C 
Sbjct: 11  HHVFFCLNQREKSADRPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRCE 68

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P+V++      Y  +    ++EI+++    GQ
Sbjct: 69  EGPVVVVYPEGVWYTYVDTNDIDEIVESHLRDGQ 102


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C       + E  +  + +  +   +D  +      C G C   P+V 
Sbjct: 42  EHLQILICGGTGCKASDSHIIAERLQQALERNNI---AD-KVDIITTGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  + P+  +EI+     G
Sbjct: 98  IIPDNTFYTQVVPDDADEIVREHIIG 123


>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
 gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
           HymB-like [Clostridium difficile]
 gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
          Length = 628

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  T C      +++    N+I +  +       +S     C G C   P+V +
Sbjct: 34  RRELLVCCDTGCTSSNSLEIVSELENEIKKSGIQD----KVSVRLTGCFGFCAQGPIVKV 89

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  + P   E+I+ +
Sbjct: 90  YPDNVFYVKVEPSDAEKIVQS 110


>gi|301631537|ref|XP_002944854.1| PREDICTED: ferredoxin, 2Fe-2S-like [Xenopus (Silurana) tropicalis]
          Length = 113

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 84  QFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
               +P   + H+  C          C   G ++  E C+ +   K L  +  G +   +
Sbjct: 1   MSDTTPPYFQRHIFFCLNERANGEACCAQYGAQQAFEHCKAQ--AKALGLSGPGKVRVNK 58

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
             C   C   P+ ++      Y  +    ++EI+      GQ  + +R  P++ R
Sbjct: 59  AGCLDRCAAGPVAVVYPEGVWYSYVDTSDIDEIVTTHLRDGQVVERLRTPPELGR 113


>gi|187927293|ref|YP_001897780.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J]
 gi|309780008|ref|ZP_07674761.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA]
 gi|187724183|gb|ACD25348.1| putative ferredoxin 2Fe-2S protein [Ralstonia pickettii 12J]
 gi|308921178|gb|EFP66822.1| ferredoxin, 2Fe-2S [Ralstonia sp. 5_7_47FAA]
          Length = 109

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C   G + + E  + +   K L  N +G +   +  C   C   
Sbjct: 7   HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P++++  +   Y  +  E ++EII +
Sbjct: 65  PVMVVYPEAVWYTFVDKEDIDEIIQS 90


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNK-------IHQKPLHRNSDG-TLSWEEVECQGAC 144
           R  + +C  T C+  G   +    + +       +H +      D       +  CQG C
Sbjct: 21  RMRIIICAGTGCLAGGSLNIFHAFKAEAQKHGVPLHVELKQ--EDNPEFLLSKSGCQGFC 78

Query: 145 VNAPMVMIG--KDTYEDLTPERLEEIID 170
              P+V I      Y  +T E + EI +
Sbjct: 79  QVGPLVTIEPAGILYTKVTAEDVPEIFE 106


>gi|124262989|ref|YP_001023459.1| hypothetical protein Mpe_B0451 [Methylibium petroleiphilum PM1]
 gi|124263023|ref|YP_001023493.1| hypothetical protein Mpe_B0486 [Methylibium petroleiphilum PM1]
 gi|124262235|gb|ABM97224.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
 gi|124262269|gb|ABM97258.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 115

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 93  RAHVQVCGTTPCMLRG-CEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           R H+ +C    C   G  + L +   +K   +            +    V C  AC   P
Sbjct: 14  RRHILICTGPRCTKDGQSQVLFDSLGDKFKAVGLHQGEL----RVKRSRVSCFAACNGGP 69

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           ++ +      Y D+TP+ ++ II+    G
Sbjct: 70  VMCVQPDGVWYYDVTPQNMDRIIEQHLVG 98


>gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis]
          Length = 541

 Score = 48.6 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             ++ C    C+    + + E           +  +   +    V C   C   P+V + 
Sbjct: 20  VQIRCCVAAGCLSANSQAVKERLEET--VTAKNLTA--KVEVRGVGCMRLCCQGPLVEVR 75

Query: 153 ---------GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
                     K  YE +TP+    I+ A + G+  T++ G       + 
Sbjct: 76  SQEESQQFPQKKLYEKVTPDDAPSIVTAVN-GEETTVKQGNLSHPFFTY 123


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R HV VC  T C      ++ +    +I       N +  +   +  C G C   P+V
Sbjct: 38  GARKHVLVCAGTGCTSSKSPQIQKKFEEQI----EQNNLNDEVKIVKTGCFGFCEAGPIV 93

Query: 151 MI--GKDTYEDLTPERLEEIIDA 171
           +I      Y  +  E +E I+  
Sbjct: 94  VIYPEGTFYSHIKVEDVERIVKE 116


>gi|73539984|ref|YP_294504.1| putative ferredoxin [Ralstonia eutropha JMP134]
 gi|72117397|gb|AAZ59660.1| putative Ferredoxin [Ralstonia eutropha JMP134]
          Length = 106

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGA 143
           + HV  C          C     + + E  +    ++          G +   +  C   
Sbjct: 6   KHHVFFCLNQREAGENCCAQHNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNR 61

Query: 144 CVNAPMVMIGKDT--YEDLTPERLEEIIDA 171
           C   P++++  +   Y  +  + ++EIID+
Sbjct: 62  CELGPVLVVYPEAVWYTFVDEKDIDEIIDS 91


>gi|57234137|ref|YP_181864.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195]
 gi|57224585|gb|AAW39642.1| ferredoxin, 2Fe-2S [Dehalococcoides ethenogenes 195]
          Length = 100

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ VC +          C  +G   L+    N+I            +      C  +C 
Sbjct: 6   YHILVCNSFRVNGDPQGICNRKGAADLLGYLENEI-IDRG-----LNVLVSSTGCLKSCE 59

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179
           + P ++I      Y ++   +L+ I+DA   GQ  +
Sbjct: 60  HGPAMVIYPPGWWYGEVDTAKLDIILDALEDGQAAS 95


>gi|53724947|ref|YP_101910.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344]
 gi|121599717|ref|YP_991578.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1]
 gi|126449924|ref|YP_001082713.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247]
 gi|254202023|ref|ZP_04908387.1| ferredoxin family protein [Burkholderia mallei FMH]
 gi|52428370|gb|AAU48963.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 23344]
 gi|121228527|gb|ABM51045.1| ferredoxin, 2Fe-2S [Burkholderia mallei SAVP1]
 gi|126242794|gb|ABO05887.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10247]
 gi|147747917|gb|EDK54993.1| ferredoxin family protein [Burkholderia mallei FMH]
          Length = 104

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 6   RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 63

Query: 145 VNAPMVM-IGKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V+      Y  +    ++EI+++    GQ
Sbjct: 64  EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 97


>gi|218779362|ref|YP_002430680.1| ferredoxin, 2Fe-2S [Desulfatibacillum alkenivorans AK-01]
 gi|218760746|gb|ACL03212.1| ferredoxin, 2Fe-2S [Desulfatibacillum alkenivorans AK-01]
          Length = 100

 Score = 48.6 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 17/94 (18%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ VC +          C  +G   L+    N+I         D  ++     C  AC 
Sbjct: 6   HHIFVCASFRADGDAKGVCNKKGAVSLLPYIENEI-IDRG---LDAQIT--STGCMKACD 59

Query: 146 NAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQ 176
           + P+++I      Y  +  E  ++EI+DA   G+
Sbjct: 60  HGPVMVIYPAGLWYGGVESEDAVDEILDALEDGE 93


>gi|255502229|gb|ACU11594.1| HfsA [Thermoanaerobacterium saccharolyticum]
          Length = 84

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + VC  + C L+G   +I   +  I     +         +  +   C G C+ A  V 
Sbjct: 5   VITVCVGSSCHLKGSYDVINKLKEMIKNYGIED-------KVELKADFCMGNCLRAVSVK 57

Query: 152 IGKDTYEDLTPERLEEIIDAFSTGQ 176
           I       + P  +E        G+
Sbjct: 58  IDGGACLSIKPNSVERFFKEHVLGE 82


>gi|239906687|ref|YP_002953428.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1]
 gi|239796553|dbj|BAH75542.1| 2Fe-2S ferredoxin [Desulfovibrio magneticus RS-1]
          Length = 101

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 94  AHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             + VC            C  +G   L+              + D         C   C 
Sbjct: 6   YLINVCASFRVKGEAKGICHKKGSHNLLGYMEE------GILDRDIDARVVSTGCLKQCE 59

Query: 146 NAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
           + P+V++        E  + ++++EI+DA   G+ 
Sbjct: 60  DGPVVVVMPNNWWYKEIDSEDKVDEILDALENGEA 94


>gi|283853653|ref|ZP_06370886.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283570955|gb|EFC18982.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 80

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  + C  RG +K + +    +    L       +      C+  C + P + I
Sbjct: 2   KHDIVICMGSSCFARGNKKHLLLIEQYLADHGLTDT----VVLSGSRCEDQCTSGPNIRI 57

Query: 153 GKDTYEDLTPERLEEII 169
               Y D+  ERL E++
Sbjct: 58  DGQLYGDINTERLMELL 74


>gi|282900705|ref|ZP_06308647.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194505|gb|EFA69460.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 188

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVM 151
           A + VC  + C+  G + L+      +            +  E   CQ AC  AP  ++M
Sbjct: 106 AKIMVCQKSACLKHGGKSLLANLEKTL-CDRGLL---DKVKIEHTNCQKACRTAPNCILM 161

Query: 152 IGKDTYEDLTPERLEEII 169
           +G++ Y+ L PE +  ++
Sbjct: 162 LGEEQYKKLEPEAIASLL 179


>gi|160878254|ref|YP_001557222.1| hypothetical protein Cphy_0093 [Clostridium phytofermentans ISDg]
 gi|160426920|gb|ABX40483.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
          Length = 80

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C L+G  ++I      I +  L       +      C G CV    + +  
Sbjct: 2   VVTICVGSSCHLKGSREIITRLETLITENKLKS----KVELNGAFCMGQCVKGVCIKLDG 57

Query: 155 DTYEDLTPERLE-----EIIDAF 172
           + +  LTP+  +     EI+   
Sbjct: 58  EPFS-LTPKDTDSFFHGEILRRL 79


>gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
 gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
          Length = 594

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--M 151
             + +CG T C+    ++L E     +    L       +      C G C   P+V  M
Sbjct: 4   TKIYICGGTGCISSKSKRLKENIEAILASNHLE----NKVEVRLTGCFGFCEKGPIVKIM 59

Query: 152 IGKDTYEDLTPERLEEIID 170
                Y ++ P    EI++
Sbjct: 60  PDNTFYTEVNPRDAIEIVE 78


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148
           + +CG T C+  G  K+ +  +  I Q+ L  +        D ++  ++  C G C   P
Sbjct: 27  ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           ++ I      Y  +  E  EEI++ 
Sbjct: 87  LLRIEPEGILYIKVKLEDCEEIVEK 111


>gi|288573616|ref|ZP_06391973.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569357|gb|EFC90914.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 85

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + +C  + C  RG ++ ++  +  +    L       +  +   C+G C+  P + + 
Sbjct: 4   HTIVICMGSSCFSRGNQENLQEIKTFLKDNDLED----QVLLKGSRCEGECLKGPNITVD 59

Query: 154 KDTYEDLTPERLEEIIDA 171
              +  +  E +  I++ 
Sbjct: 60  GRLFNGVKRENILSILEE 77


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148
           + +CG T C+  G  K+ +  +  I Q+ L  +        D ++  ++  C G C   P
Sbjct: 27  ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           ++ I      Y  +  E  EEI++ 
Sbjct: 87  LLRIEPEGILYIKVKLEDCEEIVEK 111


>gi|124384163|ref|YP_001027349.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229]
 gi|238561972|ref|ZP_00441172.2| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4]
 gi|251767973|ref|ZP_02269015.2| ferredoxin family protein [Burkholderia mallei PRL-20]
 gi|254177055|ref|ZP_04883712.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399]
 gi|254207355|ref|ZP_04913706.1| ferredoxin family protein [Burkholderia mallei JHU]
 gi|254357612|ref|ZP_04973886.1| ferredoxin family protein [Burkholderia mallei 2002721280]
 gi|124292183|gb|ABN01452.1| ferredoxin, 2Fe-2S [Burkholderia mallei NCTC 10229]
 gi|147752897|gb|EDK59963.1| ferredoxin family protein [Burkholderia mallei JHU]
 gi|148026676|gb|EDK84761.1| ferredoxin family protein [Burkholderia mallei 2002721280]
 gi|160698096|gb|EDP88066.1| ferredoxin, 2Fe-2S [Burkholderia mallei ATCC 10399]
 gi|238523564|gb|EEP87002.1| ferredoxin, 2Fe-2S [Burkholderia mallei GB8 horse 4]
 gi|243061222|gb|EES43408.1| ferredoxin family protein [Burkholderia mallei PRL-20]
          Length = 108

 Score = 48.2 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C   G +++ E  + +   K L     G +   +  C   C
Sbjct: 10  RHHVFFCLNQREKGAERPSCANCGSQEMQEYAKKR--VKELGLAGAGKVRVNKAGCLDRC 67

Query: 145 VNAPMVM-IGKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V+      Y  +    ++EI+++    GQ
Sbjct: 68  EEGPVVVYPEGTWYTYVDKNDIDEIVESHLRDGQ 101


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG T C     +++ +    +   + L       +   +  C G C   P+V I   
Sbjct: 7   ILVCGGTGCESSKSDQIFKNLIAECEAQGLKDT----VQVVKTGCFGFCEQGPIVKILPE 62

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  ++PE  +E+I  
Sbjct: 63  DSFYVRVSPEDAKELISE 80


>gi|239904992|ref|YP_002951731.1| hypothetical protein DMR_03540 [Desulfovibrio magneticus RS-1]
 gi|239794856|dbj|BAH73845.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 80

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  + C  RG  K + +    +       +   ++      C+  C   P + I
Sbjct: 2   KHEIVICMGSSCFARGNRKHLLMIEQYLA--DHGLSE--SVVLTGSRCEDQCRCGPNIRI 57

Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175
               Y D+  ERL E++     G
Sbjct: 58  DGQLYGDINGERLLELLSRHLAG 80


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL---HRNSD-GTLSWEEVECQ 141
           +    G    + VC  T C+  G   +    R    +          D   +   +  CQ
Sbjct: 17  RDRKDGYTCRILVCAGTGCVATGSLDVYSQLRELCKEDEGIRVELEKDVPHIGIVKSGCQ 76

Query: 142 GACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
           G C   P+V I      Y  + PE  EEI++        T++ G  ++R+     G
Sbjct: 77  GFCELGPLVRIEPQHCQYVKVQPEDCEEIVEK-------TVKQGIPVERLFYKKEG 125


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-------SDGTLSWEEVECQGACVNAP 148
           + +CG T C+  G  K+ +  +  I Q+ L  +        D ++  ++  C G C   P
Sbjct: 27  ILICGGTGCVASGSLKIYDRLKELIEQRGLEVSISLEDEPHDNSVGLKKSGCHGFCEMGP 86

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           ++ I      Y  +  E  EEI++ 
Sbjct: 87  LLRIEPEGILYIKVKLEDCEEIVEK 111


>gi|226355039|ref|YP_002784779.1| ferredoxin [Deinococcus deserti VCD115]
 gi|226317029|gb|ACO45025.1| putative Ferredoxin [Deinococcus deserti VCD115]
          Length = 120

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMV 150
           TR H+ VC  + C  RG   L +     + ++ L      G++      C GAC + P +
Sbjct: 8   TRGHLLVCQGSSCQARGSSLLHQALWKHLEREALSYYKQGGSVRLTTSGCLGACNHGPTM 67

Query: 151 MI 152
            +
Sbjct: 68  CV 69


>gi|188996507|ref|YP_001930758.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|237755692|ref|ZP_04584301.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5]
 gi|188931574|gb|ACD66204.1| putative ferredoxin 2Fe-2S protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|237692142|gb|EEP61141.1| ferredoxin, 2Fe-2S [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 108

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL---SWEEVECQGACV 145
           HV VC          C  +G +++    +  +  K       G     +     C G C+
Sbjct: 6   HVFVCMQRKPPGMPSCGDKGSDQIFMKFQEALMTK-------GLFNKMAVTATGCLGPCM 58

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P V++      Y ++TP  +EEI+  
Sbjct: 59  FGPNVVVYPDAIWYGNVTPADVEEIVQK 86


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + V   T  +  G EK++   + ++  + L    D   +     C G C   P+V I
Sbjct: 21  RPRIVVGLGTCGIAAGGEKVMAAIKEQVAARGLDV--DVDFT----SCIGMCYREPLVEI 74

Query: 153 G-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSL 200
                    Y D+ P+++E +I++                   + P  GL ++
Sbjct: 75  SLPGRPSVIYGDIFPDKVERLIESHLIKGEPVFEWAAMQITEGAEPYDGLVTM 127


>gi|307728306|ref|YP_003905530.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003]
 gi|323524596|ref|YP_004226749.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001]
 gi|307582841|gb|ADN56239.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1003]
 gi|323381598|gb|ADX53689.1| Sucraseferredoxin family protein [Burkholderia sp. CCGE1001]
          Length = 107

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     + + E  + +   K L     G
Sbjct: 3   SFY----------KYHVFFCLNQREPGAERPSCANCNAQAMQEHAKKR--VKKLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            +   +  C   C   P +++      Y  +    ++EI+D+  + G+
Sbjct: 51  QVRINKAGCLDRCELGPALVVYPEGVWYTYVDESDIDEIVDSHLANGK 98


>gi|125995227|dbj|BAF47142.1| hypothetical protein [Gloeothece sp. KO68DGA]
          Length = 197

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            +  + +C  + C  RG  +L +  +     +  +         ++ E+  CQ  C  AP
Sbjct: 110 KKGKILLCNKSDCAKRGGRELYQTLQKTLCNLGLQDH-------VTIEKTSCQKRCGKAP 162

Query: 149 --MVMIGKDTYEDLTPERLEEIIDA 171
             ++M GK       P+ + E+++ 
Sbjct: 163 NLILMPGKARLSKPNPKTISELLED 187


>gi|302339760|ref|YP_003804966.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293]
 gi|301636945|gb|ADK82372.1| hypothetical protein Spirs_3274 [Spirochaeta smaragdinae DSM 11293]
          Length = 93

 Score = 48.2 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC---QGACVN-- 146
            + HV VC  T C  RG  +L+E  R +   K            EE+ C      C +  
Sbjct: 9   AKMHVSVCMGTNCTFRGASQLMETLRAEEGIKDHCI-------IEEMSCPDEL--CDHSR 59

Query: 147 -APMVMIGKDTYEDLTPERLEEIIDA 171
            +P+V I  D      PE    I+D 
Sbjct: 60  RSPVVKIDDDYVMQAKPE---AILDE 82


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V +C  T C+  G   +I++   +   +      D  +      C+G C   P ++
Sbjct: 5   AKKQVFICAGTGCISSGANTIIDLINVE--IERRGLAKD--VELIATGCRGFCEQGPTLV 60

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
           I   +  Y  + PE + E+++     QG+ +     +D  S  PA
Sbjct: 61  IEPAQRFYRRIQPEDIPELVEK-ELAQGEKVERLFYVDPQSGEPA 104


>gi|115352996|ref|YP_774835.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
 gi|115282984|gb|ABI88501.1| ferredoxin-like protein [Burkholderia ambifaria AMMD]
          Length = 105

 Score = 48.2 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQRDPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|257387914|ref|YP_003177687.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257170221|gb|ACV47980.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 410

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R     +      D  ++     C G C   PMV +  
Sbjct: 319 HVAVCTNQTCAADGSAAVLERLRQA---ERDSEACDARVT--RSSCLGRCGEGPMVAVYP 373

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +  +  E I+ +
Sbjct: 374 DGVWYGGVGEDDAERIVSS 392


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRN--KIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           + +V VC  T C   G   ++E  +   + H+  +  +       +   C G C N P+V
Sbjct: 2   KQNVLVCCGTGCRANGSLLVLEALQKAARKHKSDIEVSPL----IKSTGCNGFCENGPIV 57

Query: 151 MIG--KDTYEDLTPERLEEIIDA 171
            I     +Y  + PE  + II  
Sbjct: 58  KIEPADISYYKVKPEDADSIIKD 80


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +  P   +  + +C  + C+  G  ++I   + +I ++ L    D         C G C 
Sbjct: 20  RRDP--DKPCISICAGSGCVASGALEVIAAFKAEIEKQGLAATVDTK----GTGCPGFCE 73

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P+V+I   +  Y  + PE + EII  
Sbjct: 74  RGPVVVIYPEEICYLQVMPEDVPEIISQ 101


>gi|24158931|pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 gi|24158932|pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158
            C  RG  ++ +    KI   P                 C  A +  P+V++      Y 
Sbjct: 21  SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGCMNASMMGPVVVVYPDGVWYG 75

Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181
            + PE ++EI++    G     R
Sbjct: 76  QVKPEDVDEIVEKHLKGGEPVER 98


>gi|119509521|ref|ZP_01628669.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414]
 gi|119465927|gb|EAW46816.1| hypothetical protein N9414_17603 [Nodularia spumigena CCY9414]
          Length = 110

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V+VC    C  +G  K++      +            ++     C G C N PMV++  
Sbjct: 21  CVRVCQNRTCKKQGAAKVLAAFATFLVPD---------VTVTASGCLGQCGNGPMVLVLP 71

Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175
               Y  + P+ +  +++    G
Sbjct: 72  DMVWYSGVRPDEVPLVVEQHLLG 94


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIE---VCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150
            V VC  T C+  G +K+ E   V   +I    +    D   +   +  CQG C   P++
Sbjct: 26  RVLVCSGTGCIASGAQKIYEEMSVLCERIDGVTVEMQKDVPHVGVIKTGCQGLCELGPLM 85

Query: 151 MIG--KDTYEDLTPERLEEIIDA 171
            I      Y  + PE  +EI++ 
Sbjct: 86  RIEPYDYQYVHVQPEDCKEIVER 108


>gi|170704065|ref|ZP_02894700.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
 gi|171320086|ref|ZP_02909154.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
 gi|172061848|ref|YP_001809500.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
 gi|170131026|gb|EDS99718.1| ferredoxin-like protein [Burkholderia ambifaria IOP40-10]
 gi|171094683|gb|EDT39729.1| ferredoxin-like protein [Burkholderia ambifaria MEX-5]
 gi|171994365|gb|ACB65284.1| ferredoxin-like protein [Burkholderia ambifaria MC40-6]
          Length = 105

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCNAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|257463868|ref|ZP_05628254.1| hypothetical protein FuD12_08469 [Fusobacterium sp. D12]
          Length = 73

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 12/72 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC    C  R   K+ E    +                EEV C G C   P V I  
Sbjct: 9   KVIVCRGVSCG-RKNRKMWETLSEREDII-----------LEEVRCFGQCKKGPNVKIDG 56

Query: 155 DTYEDLTPERLE 166
             Y  +  E++E
Sbjct: 57  QMYHFMDLEKVE 68


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V VC  T C +    +LI     +I    L       +      C G C   P + 
Sbjct: 4   KRTQVLVCAGTGCTIGNSGELITEFEKEIKALGLE----KEVEVLRTGCLGLCGVGPNIS 59

Query: 152 I--GKDTYEDLTPERLEEII 169
           I      Y+ +    ++EI+
Sbjct: 60  IYPDNIIYKTVQVSDVKEIV 79


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VC  T C      K+++     +    L       +   +  C G C   P+V++
Sbjct: 5   RAHVLVCAGTGCTSSNSLKIMDEMEALLASNGLES----EVKIVKTGCFGLCAEGPIVVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +     +EI++ 
Sbjct: 61  YPEGAMYTRVEVSDAKEIVEE 81


>gi|218439690|ref|YP_002378019.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424]
 gi|218172418|gb|ACK71151.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 7424]
          Length = 104

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V VC  + C+++G  K++   +       L    D T       CQG C  +P V I  
Sbjct: 9   CVMVCQHSSCIVQGSAKILLAFQ-------LADLPDDTF-VMASGCQGQCSTSPTVRIIP 60

Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185
            +  Y  +  + + +I++     GQ  T +  P+
Sbjct: 61  DETWYYRVQLDDVNKIVEQHLKAGQPVTEKLHPR 94


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 14/76 (18%)

Query: 103 PC-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYED 159
            C    G  K+++               D    +E   C G C   P++ I    + Y  
Sbjct: 9   SCGFAAGAHKVMDELEQI---------KDIQFEYEITGCIGMCHLEPIMEIHDNGEMYRF 59

Query: 160 LT--PERLEEIIDAFS 173
           +   PE +  I++ + 
Sbjct: 60  VKVMPEDVRPILEDYK 75


>gi|332830634|gb|EGK03240.1| hypothetical protein HMPREF9455_00628 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 101

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 22/99 (22%)

Query: 94  AHVQVCGT--TP------CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142
             + VC +          C  +G    ++    +        +              C  
Sbjct: 6   YMIMVCNSYRVAGDAQGFCNKQGATSFVQYISEECSDRAINAVVTT---------TACLS 56

Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            C   P+V+I      Y  +T ++L+EI+DA   G+  +
Sbjct: 57  VCSQGPVVVIQPNNFWYGGVTEDKLDEILDALEEGKAVS 95


>gi|328952093|ref|YP_004369427.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109]
 gi|328452417|gb|AEB08246.1| ferredoxin, 2fe-2s [Desulfobacca acetoxidans DSM 11109]
          Length = 111

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 94  AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ VC +         C+ +  ++L+    +++  + +       +      C   C  
Sbjct: 16  YHIFVCMSFRGLEPKGKCIRKNAQELLSYLESELADRGM-----NNVMVSTTGCLKLCDK 70

Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTG 175
            P+V++      Y  +  E  ++ I+DA   G
Sbjct: 71  GPVVVVYPNGYWYAGVDGEGAVDAILDALENG 102


>gi|302037414|ref|YP_003797736.1| sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii]
 gi|300605478|emb|CBK41811.1| Sirohydrochlorin cobaltochelatase [Candidatus Nitrospira defluvii]
          Length = 393

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C  RG   LI   R  +         D  ++     C G C   P V +  
Sbjct: 302 HVLVCVNADCADRGSVTLIATLRRLLKDAGREV--DIKVT--RTLCMGRCGEGPTVAVYP 357

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +      E++D 
Sbjct: 358 DGIWYRGVQETDARELVDE 376


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + VCG T CM    +KLI    + ++ +         ++     C G C   P+V 
Sbjct: 32  EYREILVCGGTGCMSSQSQKLI----DNLNAEIAKAGLSDKVNAHITGCFGFCEQGPIVK 87

Query: 152 I--GKDTYEDLTPERLEEIID 170
           +      Y  + PE   E++ 
Sbjct: 88  VFPDDVFYVQVAPEDAAELVK 108


>gi|167585313|ref|ZP_02377701.1| Ferredoxin-like protein [Burkholderia ubonensis Bu]
          Length = 105

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGK 98


>gi|94309172|ref|YP_582382.1| ferredoxin-like protein [Cupriavidus metallidurans CH34]
 gi|93353024|gb|ABF07113.1| putative ferredoxin (modular protein) [Cupriavidus metallidurans
           CH34]
          Length = 134

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 15/89 (16%)

Query: 94  AHVQVC-----GTTPCML-RGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144
            HV  C       + C      + + E  +    ++          G +   +  C   C
Sbjct: 35  HHVFFCLNQRDDGSACCADHNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 90

Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171
              P++++  +   Y  +  + ++EII++
Sbjct: 91  ELGPVLVVYPEAVWYTFVDEQDIDEIIES 119


>gi|254425178|ref|ZP_05038896.1| hypothetical protein S7335_5341 [Synechococcus sp. PCC 7335]
 gi|196192667|gb|EDX87631.1| hypothetical protein S7335_5341 [Synechococcus sp. PCC 7335]
          Length = 212

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             + VC  + C  +G +K+ +             +    +  +   C   C   P V++ 
Sbjct: 127 TRILVCQKSSCRKKGSQKVSDAMEK--AIANAEASD--QVIVKSTGCLKCCKTGPTVVVL 182

Query: 153 --GK-------DTYEDLTPERLEEIIDA 171
                      + +  +TP+  ++I+ +
Sbjct: 183 PANDKNKKTSKERHRKVTPKAAKKIVAS 210


>gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
          Length = 400

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MI-G 153
           + VCG T C     E +++  +  + ++ L       +      C G C   P+V M+  
Sbjct: 8   ILVCGGTGCRASQSELILQNLKEAVERQGLQET----VQVIRTGCFGFCEKGPVVKMVPD 63

Query: 154 KDTYEDLTPERLEEII-DAFSTGQ 176
              Y  + P    +I+ +    G+
Sbjct: 64  NTFYVQVKPTDAVDIVREHLVKGR 87


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V +C  T C+  G   +I++   +   +      D  +      C+G C   P ++
Sbjct: 5   AKKQVFICAGTGCISSGANTIIDLMNVE--IERQGLAKD--VELIATGCRGFCEQGPTLV 60

Query: 152 IG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
           I   +  Y  + PE + E+++     QG+ +     +D  S  PA
Sbjct: 61  IEPAQRFYRRIQPEDIPELVEK-ELAQGEKVERLFYVDPQSGEPA 104


>gi|304439875|ref|ZP_07399769.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371614|gb|EFM25226.1| NADH dehydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 92

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACV-----N 146
            V VC  + C + G  ++ +      N++        S   L     +C   C       
Sbjct: 2   KVTVCMGSRCTMMGANQIYDQLEYIANELCGPESELCSSKNLELNISKCLNLCKGENERK 61

Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFS 173
           AP+V+I  +   + TP+ + E++++A  
Sbjct: 62  APIVVIDDEIVYNATPQVVSEKVMEALR 89


>gi|196228397|ref|ZP_03127264.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus
           Ellin428]
 gi|196227800|gb|EDY22303.1| putative iron-sulfur cluster-binding protein [Chthoniobacter flavus
           Ellin428]
          Length = 168

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           ++VC    C   G ++L +   + +  +       GT+  E   C   C   P       
Sbjct: 93  IRVCNKKNCWRNGGKELWDALEDTLA-RQGLT---GTIPLEGAHCLDHCKRGPNAEWRGH 148

Query: 156 TYEDLTPERLEEII 169
            +   TP   E I+
Sbjct: 149 DFHHCTPRDAERIV 162


>gi|310779196|ref|YP_003967529.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926]
 gi|309748519|gb|ADO83181.1| Sucraseferredoxin family protein [Ilyobacter polytropus DSM 2926]
          Length = 102

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C+ +    +I+    +        +  G +      C   
Sbjct: 4   PKHHIFVCSSSRINGQQKGYCLQKESVTIIQNFMEE--IDDRDLS--GEIMVTNTGCLAI 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           C   P+V++      Y  +TP+ +EEI+D+   G     R
Sbjct: 60  CDKGPIVIVYPEGVWYGSVTPDDVEEIMDSHIEGGKPVER 99


>gi|110668920|ref|YP_658731.1| cobalamin cluster protein CbiX ( ferredoxin-like iron-sulfur
           protein) [Haloquadratum walsbyi DSM 16790]
 gi|109626667|emb|CAJ53134.2| conserved cobalamin cluster protein CbiX (probable ferredoxin-like
           iron-sulfur protein) [Haloquadratum walsbyi DSM 16790]
          Length = 418

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R          +    +      C G C + PMV +  
Sbjct: 329 HVTVCMNQTCAADGAASVLEQLRQ-----SARDSDACDVRITRSSCLGRCGDGPMVAVYP 383

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +  E   EI+ +
Sbjct: 384 DGVWYGSVDDEGATEIVSS 402


>gi|323483910|ref|ZP_08089285.1| hypothetical protein HMPREF9474_01034 [Clostridium symbiosum
           WAL-14163]
 gi|323693499|ref|ZP_08107706.1| hypothetical protein HMPREF9475_02569 [Clostridium symbiosum
           WAL-14673]
 gi|323402748|gb|EGA95071.1| hypothetical protein HMPREF9474_01034 [Clostridium symbiosum
           WAL-14163]
 gi|323502456|gb|EGB18311.1| hypothetical protein HMPREF9475_02569 [Clostridium symbiosum
           WAL-14673]
          Length = 81

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS---DGTLSWEEVECQGACVNAPMVM 151
            V +C  + C L+G  ++I+  +               DG +      C G C+    V 
Sbjct: 2   RVSICIGSACHLKGSREVIKKLQQL-------VTDNKLDGKVDLNGDFCSGNCLKGVCVT 54

Query: 152 IGKDTYE 158
           +  + Y 
Sbjct: 55  VDGELYS 61


>gi|264676433|ref|YP_003276339.1| ferredoxin [Comamonas testosteroni CNB-2]
 gi|262206945|gb|ACY31043.1| ferredoxin-like protein [Comamonas testosteroni CNB-2]
          Length = 118

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
                G     H+  C          C L G +   + C+ K   K       G +   +
Sbjct: 6   NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNK 63

Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   C   P+ ++  +   Y  +    ++EI+++    G+
Sbjct: 64  AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKNGK 105


>gi|332711033|ref|ZP_08430968.1| ferredoxin [Lyngbya majuscula 3L]
 gi|332350159|gb|EGJ29764.1| ferredoxin [Lyngbya majuscula 3L]
          Length = 107

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 14/100 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMV 150
            +  V VC    C+  G  +++               +D    S     CQG C + P V
Sbjct: 13  EKPCVLVCQHKSCLAAGSAEVLAAFEE----------ADLSEFSVIGTTCQGQCSSGPTV 62

Query: 151 MI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
            I   +  Y  + P+ +  I++     G+    +  P+I 
Sbjct: 63  RIVPEETWYCRVKPQDVPVIVEQHLQGGKLVRAKLHPRIH 102


>gi|258514318|ref|YP_003190540.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771]
 gi|257778023|gb|ACV61917.1| ferredoxin, 2Fe-2S [Desulfotomaculum acetoxidans DSM 771]
          Length = 102

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 92  TRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC ++         C  +    ++   R +I      R   G +      C G 
Sbjct: 4   PKKHIFVCTSSRPNGQQKGFCHTKAGVDILNNFREEI----EERGLGGEVFISNTGCFGL 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V++      Y  + P+ +EEI+D    G
Sbjct: 60  CEQGPIVVVYPENVWYGAVVPDDVEEIMDEHIEG 93


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VC  T C      K+I+   + +    L    D  +   +  C G C   P+V++
Sbjct: 5   RAHVLVCAGTGCTSSNSLKIIDEMESLLVSNRL----DSEVQIVKTGCFGLCAEGPIVVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +    ++EI++ 
Sbjct: 61  YPEGAMYTRVEISDVKEIVEE 81


>gi|241766086|ref|ZP_04763999.1| ferredoxin-like protein [Acidovorax delafieldii 2AN]
 gi|241363890|gb|EER59196.1| ferredoxin-like protein [Acidovorax delafieldii 2AN]
          Length = 119

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+  C          C   G ++  + C+ +   K       G +   +  C   C   P
Sbjct: 18  HIFFCLNDRPNGENSCAHHGAQEAFDRCKAQ--VKAAGLAGPGKVRVNKAGCLDRCAAGP 75

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
           + ++      Y  +    ++EI+++    GQ  + +   P++ R
Sbjct: 76  VAVVYPEGTWYSYVDASDVDEIVESHLKNGQIVERLLTPPELGR 119


>gi|307154991|ref|YP_003890375.1| hypothetical protein Cyan7822_5219 [Cyanothece sp. PCC 7822]
 gi|306985219|gb|ADN17100.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 96

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V +C    C   G  ++ E+ +          N    +   +V C G C N PMV+I  
Sbjct: 8   KVLICCNRTCRKSGSSRIFEIFK---------TNPIPEVEVIKVGCLGECGNGPMVLILP 58

Query: 153 GKDTYEDLTPERLEEIIDAFSTGQGD 178
            +  Y  + P+ +  II     G   
Sbjct: 59  EEIWYWQVQPDEVSMIIQKHLRGHSP 84


>gi|119356570|ref|YP_911214.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
 gi|119353919|gb|ABL64790.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
          Length = 102

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQ 141
            + H+ VC       TP   C  +    LI    +++       +  G   ++     C 
Sbjct: 4   PKHHIFVCGSFRAQGTPQGICHKKESLSLIPYFESEL-------SDRGMSDVAVSATGCL 56

Query: 142 GACVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177
             C   P+V+I      Y ++   E+++EI+DA   G+ 
Sbjct: 57  NICEKGPVVVIYPENFWYGEVDSEEKVDEILDALEEGEA 95


>gi|121605052|ref|YP_982381.1| hypothetical protein Pnap_2152 [Polaromonas naphthalenivorans CJ2]
 gi|120594021|gb|ABM37460.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 116

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 93  RAHVQVCGTTPCMLRGC-EKLIEVCRNKIHQKPLHRNSDGTLSWEE--VECQGACVNAPM 149
           + H+ VC    C   G  + L +   +K     LH   DG +  +   V C  AC   P+
Sbjct: 13  KRHLLVCIGPRCTQDGASQDLFDSLGDKFKAAGLH---DGEMRVKRSRVSCFAACKGGPV 69

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQID 187
           + +      Y ++T   ++ II     G    +      GP   
Sbjct: 70  MCVQPDGTWYYNVTSANMDRIIGQHLVGGQPVEDLVFHQGPDGG 113


>gi|91781626|ref|YP_556832.1| putative ferredoxin [Burkholderia xenovorans LB400]
 gi|91685580|gb|ABE28780.1| Putative ferredoxin [Burkholderia xenovorans LB400]
          Length = 107

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     +++ E  + +   K L     G
Sbjct: 3   SFY----------KYHVFFCLNQREPGAERPSCANCNAQEMQEHAKKR--VKKLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            +   +  C   C   P +++      Y  +    ++EI+D+
Sbjct: 51  QVRINKAGCLDRCELGPALVVYPEGVWYTYVDESDIDEIVDS 92


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRN------KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            + VCG T C+  G +K+    +        +  K         +  +   C G C   P
Sbjct: 26  CILVCGGTGCLAGGSDKIYARLKELTSNMDHVTVKIGE--EIAHVGLKMSGCHGFCEMGP 83

Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171
           +V I      Y  +  E  EEI + 
Sbjct: 84  LVRIEPYNYLYLKVKLEDCEEIFEK 108


>gi|144899663|emb|CAM76527.1| ferredoxin 2fe-2s [Magnetospirillum gryphiswaldense MSR-1]
          Length = 113

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R H  +C            C  RG E L +  +    +K +     G +      C   C
Sbjct: 12  RIHAFICTNRRADDHPRGSCAARGSEPLRDYLKAAAKKKGV-----GGVRVNAAGCLDRC 66

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
              P+++I      Y   + E ++EIID    G G   R
Sbjct: 67  ELGPVLVIYPEGIWYGFNSREDIDEIIDTHLLGGGRVTR 105


>gi|325519252|gb|EGC98702.1| 2Fe-2S ferredoxin [Burkholderia sp. TJI49]
          Length = 105

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    GQ
Sbjct: 65  EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGQ 98


>gi|325284075|ref|YP_004256616.1| putative ferredoxin [Deinococcus proteolyticus MRP]
 gi|324315884|gb|ADY26999.1| putative ferredoxin [Deinococcus proteolyticus MRP]
          Length = 124

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 87  LSPVGTRA-----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN-SDGTLSWEEVEC 140
           ++  G +      H+ VC    C  RG + L +     + ++ L    + G +      C
Sbjct: 1   MTKAGPKYFPTAGHLLVCQGQSCQARGSQLLYQALWQALDREHLAYYKAGGQVRLTGSGC 60

Query: 141 QGACVNAPMVMI 152
            GAC   P V +
Sbjct: 61  LGACSFGPTVCV 72


>gi|289549145|ref|YP_003474133.1| ferredoxin 2Fe-2S [Thermocrinis albus DSM 14484]
 gi|289182762|gb|ADC90006.1| ferredoxin, 2Fe-2S [Thermocrinis albus DSM 14484]
          Length = 110

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C  RG   +++    K+   P        ++     C  AC   P+V++      Y ++
Sbjct: 21  SCSDRGSRDVLQRLMEKVQFDP-ELFMSTMVT--PTGCLNACGAGPIVVVYPEGVWYGNV 77

Query: 161 TPERLEEIIDAFSTGQGDTIR 181
            PE ++EI++    G     R
Sbjct: 78  RPEDVDEIVEKHLKGNEPVER 98


>gi|147676362|ref|YP_001210577.1| hypothetical protein PTH_0027 [Pelotomaculum thermopropionicum SI]
 gi|146272459|dbj|BAF58208.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 93

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +Q+C  + C LRG  ++IE     I+    H   D  +  +   C   C +   + IG 
Sbjct: 3   VIQICVGSSCFLRGSREVIETVEKLIN----HYRLDDVVVLKGSFCMEHCNDGVTLKIGD 58

Query: 155 DTYEDLTPERLEEIIDA 171
            T+  +  E +  + + 
Sbjct: 59  KTFTGVNRESITGLFEK 75


>gi|89899956|ref|YP_522427.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118]
 gi|89344693|gb|ABD68896.1| hypothetical protein Rfer_1160 [Rhodoferax ferrireducens T118]
          Length = 103

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 42 VIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGT 92
          ++ +L   QE  GW+ RA + V A  L +    V     FY  F   PVG 
Sbjct: 24 LVQILRETQELAGWLFRAVLGVGARELTLNLAHVEVAVGFYRFFHTRPVGR 74


>gi|221211093|ref|ZP_03584072.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1]
 gi|221168454|gb|EEE00922.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD1]
          Length = 143

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 45  HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 102

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 103 EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGK 136


>gi|46395074|gb|AAS91671.1| 2Fe2S ferredoxin [Clostridium beijerinckii]
          Length = 102

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQ------KPLHRNSDGTLSWEEVECQGACVN 146
           + H+ VC    C + G +K +   ++ +        +   R+    +      C G C  
Sbjct: 5   KHHIFVC--ASCRVNGMQKGMCYSKDSVKVVQKFMEEVEERDLINEVMVTNTGCLGVCNK 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+V++      Y ++  E +E I++    G
Sbjct: 63  GPIVVVYPEGTWYGNVKVEDVERIVEEHIEG 93


>gi|119717108|ref|YP_924073.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614]
 gi|119537769|gb|ABL82386.1| hypothetical protein Noca_2884 [Nocardioides sp. JS614]
          Length = 226

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEK-----LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
            G R  V VC    C   G        ++ +  +++         D  +      CQ  C
Sbjct: 129 AGHRHQVMVCRGPRCTAMGQVDNLRAMVVALVEHQLG--------DNDVLLVHTGCQSPC 180

Query: 145 VNAPM--VMIGKDTYEDLTPERLEEIIDA 171
             AP+  V      Y  + P     I+  
Sbjct: 181 NQAPVISVQPDDVWYGGVDPAMASLIVAE 209


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 24/115 (20%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGTLSWEEVECQGA 143
            V VC  T C+  G  K+ +  R            ++  +P HR     L  ++  C G 
Sbjct: 27  KVVVCCGTGCVAGGSLKIYDRLRELCEGAGLSVSVELGLEPGHR----DLGMKKSGCIGF 82

Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
           C   P++ I      Y  ++ E  +EI +   + +G+ +     ++R+     GG
Sbjct: 83  CEMGPLLHIQPLDVLYTRVSLEDCQEIFE--RSLKGNEV-----VERLLYRAEGG 130


>gi|254442378|ref|ZP_05055854.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium
           DG1235]
 gi|198256686|gb|EDY80994.1| hypothetical protein VDG1235_611 [Verrucomicrobiae bacterium
           DG1235]
          Length = 103

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 17/94 (18%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLS---WEEVECQGACV 145
            H+ +CG+     R   +L  VC NK     +         D  LS        C   C 
Sbjct: 6   HHLFICGS----ARASGELQGVCCNKDSVALLSYTQGEV-QDRMLSGVEVSMTGCLNMCT 60

Query: 146 NAPMVMIG---KDTYEDLTPERLEEIIDAFSTGQ 176
             P+V I       YE+ T E ++EI+DA   G+
Sbjct: 61  RGPVV-IDYPSGHYYENATEELIDEILDAIEDGE 93


>gi|326315216|ref|YP_004232888.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372052|gb|ADX44321.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 116

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
             SP       H+  C          C   G ++  + C+ +   K       G +   +
Sbjct: 4   DTSPSRGYYARHIFFCLNDRINGEDSCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNK 61

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
             C   C   P+ ++      Y  +    ++EI+++    GQ  + +   P++ R
Sbjct: 62  AGCLDRCAGGPVAVVYPEGTWYTYVDTSDIDEIVESHLKNGQVVERLLTPPELGR 116


>gi|255523560|ref|ZP_05390528.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296186478|ref|ZP_06854881.1| hypothetical protein CLCAR_1930 [Clostridium carboxidivorans P7]
 gi|255512817|gb|EET89089.1| conserved hypothetical protein [Clostridium carboxidivorans P7]
 gi|296048925|gb|EFG88356.1| hypothetical protein CLCAR_1930 [Clostridium carboxidivorans P7]
          Length = 84

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + VC  + C L+G  K+I   +  I Q  L  +    +  +   C G C     V I 
Sbjct: 2   VTISVCVGSACHLKGSYKVINSLQKLISQYKLEAS----VELKGAFCLGHCTEGVSVKID 57

Query: 154 KD 155
           ++
Sbjct: 58  EE 59


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + +CG T C       + E  +  + +  +       +      C G C   P+V 
Sbjct: 42  EHLQILICGGTGCKASDSHIIAERLQQALERNNIA----NKVDVITTGCFGFCEKGPIVK 97

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTG 175
           I      Y  + P+  +E++     G
Sbjct: 98  IIPDNTFYTQVVPDDADEVVREHIIG 123


>gi|254247083|ref|ZP_04940404.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
 gi|124871859|gb|EAY63575.1| hypothetical protein BCPG_01861 [Burkholderia cenocepacia PC184]
          Length = 151

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 53  HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 110

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 111 EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 144


>gi|189346133|ref|YP_001942662.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
 gi|189340280|gb|ACD89683.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
          Length = 100

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           AHV VC          C     E +    +  + +K       G +      C G C   
Sbjct: 11  AHVFVCTNDRRGARKSCADDNSELVKAALKRVVDEKGWK----GNVRVSTSGCMGLCATG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P VMI   K  +  ++P+ ++ I+ A
Sbjct: 67  PNVMIYPQKVLFSGVSPDDVDGIVSA 92


>gi|313889054|ref|ZP_07822712.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844927|gb|EFR32330.1| conserved domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 90

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSDGTLSWEEVECQGACVN----- 146
            V +C    C L G   + +     ++ +        S   L  E   C   C       
Sbjct: 2   KVTICMGARCTLMGANAIYDAVEYLQDHLCGPESELCSAENLEVEFAHCLNYCKIHNNEA 61

Query: 147 APMVMIGKDTYEDLTPERL-EEIIDAFS 173
           +P+V++  +     T + +  +IID   
Sbjct: 62  SPVVIVDDEIMLKATAQEVSAKIIDKLR 89


>gi|167750543|ref|ZP_02422670.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702]
 gi|167656469|gb|EDS00599.1| hypothetical protein EUBSIR_01519 [Eubacterium siraeum DSM 15702]
 gi|291530238|emb|CBK95823.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           70/3]
 gi|291557050|emb|CBL34167.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 82

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  + C L+G  K+IE+ ++ I    +       ++     C G C +   + I  +
Sbjct: 4   ISICVGSSCHLKGSYKIIELAKDYIANHNIGD----KVNLGAAFCLGRCTDGVTIKIDDE 59

Query: 156 TYEDLTPERLEEIIDA 171
               +     ++I D 
Sbjct: 60  IICGVNENNFQQIFDE 75


>gi|221069458|ref|ZP_03545563.1| ferredoxin-like protein [Comamonas testosteroni KF-1]
 gi|220714481|gb|EED69849.1| ferredoxin-like protein [Comamonas testosteroni KF-1]
          Length = 118

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
                G     H+  C          C L G +   + C+ K   K       G +   +
Sbjct: 6   NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGQVRVNK 63

Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   C   P+ ++  +   Y  +    ++EI+++    G+
Sbjct: 64  AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKNGK 105


>gi|161523588|ref|YP_001578600.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616]
 gi|189351642|ref|YP_001947270.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221199885|ref|ZP_03572928.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M]
 gi|221207447|ref|ZP_03580456.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2]
 gi|160341017|gb|ABX14103.1| ferredoxin-like protein [Burkholderia multivorans ATCC 17616]
 gi|189335664|dbj|BAG44734.1| 2Fe-2S ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221172650|gb|EEE05088.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2]
 gi|221180124|gb|EEE12528.1| ferredoxin, 2Fe-2S [Burkholderia multivorans CGD2M]
          Length = 105

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGADRPSCAQCDAQTMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDKADIDEIVESHLRDGK 98


>gi|119899827|ref|YP_935040.1| ferredoxin [Azoarcus sp. BH72]
 gi|119672240|emb|CAL96154.1| conserved hypothetical ferredoxin [Azoarcus sp. BH72]
          Length = 130

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 87  LSPVGTRA--HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEE--VECQ 141
           + P       H+ VC    C     +   +   + +         D G L  +   V C 
Sbjct: 17  VKPKLGHYRRHLLVCTGPRCS---ADGEAQALFDSLGATFKAAGLDQGELRVKRTRVSCF 73

Query: 142 GACVNAP--MVMIGKDTYEDLTPERLEEIIDAFSTG 175
            AC   P   V      Y ++TPE +  I+D    G
Sbjct: 74  AACKGGPILCVQPDGVWYYNVTPENMRRIVDRHLVG 109


>gi|78067707|ref|YP_370476.1| ferredoxin-like [Burkholderia sp. 383]
 gi|77968452|gb|ABB09832.1| Ferredoxin-like protein [Burkholderia sp. 383]
          Length = 105

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCDAQSMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|125972952|ref|YP_001036862.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC
           27405]
 gi|256005708|ref|ZP_05430664.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium
           thermocellum DSM 2360]
 gi|281417162|ref|ZP_06248182.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|125713177|gb|ABN51669.1| hypothetical protein Cthe_0431 [Clostridium thermocellum ATCC
           27405]
 gi|255990339|gb|EEU00465.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Clostridium
           thermocellum DSM 2360]
 gi|281408564|gb|EFB38822.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|316940812|gb|ADU74846.1| hypothetical protein Clo1313_1790 [Clostridium thermocellum DSM
           1313]
          Length = 81

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV-NAPMVMIGK 154
           +++C  + C L+G   +I   ++ I +K LH      +  +   C   C  N   V +  
Sbjct: 4   IKICVGSSCHLKGSYNVINEFQHLIEEKALHD----KIDIKATFCMKQCQKNGVAVEVNN 59

Query: 155 DTYEDLTPERLEE 167
           + +  L PE  EE
Sbjct: 60  EIFGVL-PEAAEE 71


>gi|78188014|ref|YP_378352.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
 gi|78170213|gb|ABB27309.1| ferredoxin, 2Fe-2S [Chlorobium chlorochromatii CaD3]
          Length = 100

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           AHV VC          C     E +    +  +  K       G +      C G C   
Sbjct: 11  AHVFVCTNNRGGERKSCADGKSELVKATLKELVDAKGWK----GKVRVSSAGCLGVCSAG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIID 170
           P VMI   K  + +++ + ++EI+ 
Sbjct: 67  PNVMIYPQKVWFSNVSLDDVDEIVA 91


>gi|120609033|ref|YP_968711.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1]
 gi|120587497|gb|ABM30937.1| ferredoxin-like protein [Acidovorax citrulli AAC00-1]
          Length = 116

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
             SP       H+  C          C   G ++  + C+ +   K       G +   +
Sbjct: 4   DTSPSRGYYARHIFFCLNDRINGEDSCAHHGAKEAFDHCKAR--VKAEKLAGPGQVRVNK 61

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
             C   C   P+ ++      Y  +    ++EI+++    GQ  + +   P++ R
Sbjct: 62  AGCLDRCAGGPVAVVYPEGIWYTYVDTSDIDEIVESHLKNGQVVERLLTPPELGR 116


>gi|71907117|ref|YP_284704.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB]
 gi|71846738|gb|AAZ46234.1| ferredoxin, 2Fe-2S [Dechloromonas aromatica RCB]
          Length = 109

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 20/96 (20%)

Query: 89  PVGTRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEE 137
           P   +  + VC        P   C  +GC +  +   ++          +      +   
Sbjct: 2   PKPKKHVL-VCVQGRPNGHPRGSCQEKGCGQTWQAFSDEF------TTRNLWASGFALTN 54

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
             C G C   P V++      Y  + PE +  IID 
Sbjct: 55  TGCLGPCHLGPSVLVYPEGIMYTGVKPEDVGTIIDE 90


>gi|281356041|ref|ZP_06242534.1| hydrogenase large subunit [Victivallis vadensis ATCC BAA-548]
 gi|281317410|gb|EFB01431.1| hydrogenase large subunit [Victivallis vadensis ATCC BAA-548]
          Length = 92

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC-----VNA 147
           +  V++C  T C + G  +L      ++   P    S   +      C   C      NA
Sbjct: 6   KIKVEICLGTTCYVLGSFRLS-ALEEQL---PPELKS--KVDIVGCACLNVCHDRNYGNA 59

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTGQG 177
           P V IG+   ++ T E++  +I    +  G
Sbjct: 60  PFVRIGERIVDNATVEKVIGVIQEIVSAGG 89


>gi|170691585|ref|ZP_02882750.1| putative ferredoxin [Burkholderia graminis C4D1M]
 gi|170143790|gb|EDT11953.1| putative ferredoxin [Burkholderia graminis C4D1M]
          Length = 107

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     + + E  + +   K L     G
Sbjct: 3   SFY----------KYHVFFCLNQREPGAERPSCANCNAQAMQEHAKKR--VKKLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            +   +  C   C   P +++      Y  +    ++EI+D+  + G+
Sbjct: 51  QVRINKAGCLDRCELGPTLVVYPEGVWYTYVDESDIDEIVDSHLANGK 98


>gi|146342244|ref|YP_001207292.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. ORS278]
 gi|146195050|emb|CAL79075.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. ORS278]
          Length = 120

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 89  PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   + H  VC T          C   G + L +        +         +      C
Sbjct: 16  PQLYKYHAFVCLTQRPPGHPRGSCGALGVQPLWDRLTKT--IEAQRLTD---VGVTAAGC 70

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            G C   PM+++      Y    PE ++EI+++         + G ++DR
Sbjct: 71  FGFCSAGPMMVVYPDGIWYRPTKPEDIDEIVESH-------FKQGKRVDR 113


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            + HV +CG T C+     ++ +     + +K +       +      C G C   P+V 
Sbjct: 3   DKKHVLICGGTGCLSSKSRQIADNINTVLKEKGMED----QVEVVLTGCFGFCEKGPIVK 58

Query: 151 -MIGKDTYEDLTPERLEEIIDA 171
            M     Y ++ PE    I++ 
Sbjct: 59  IMPENTFYVEVKPEDAGRIVEE 80


>gi|283850224|ref|ZP_06367513.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B]
 gi|283574250|gb|EFC22221.1| ferredoxin, 2Fe-2S [Desulfovibrio sp. FW1012B]
          Length = 103

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 17/97 (17%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            R  + VC            C  +G   L+              + D         C   
Sbjct: 6   PRYLINVCASFRVKGEAKGICHKKGSHNLLGYFEE------GILDRDIDARVVSTGCMKQ 59

Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
           C   P+V++           + ++++E++DA   G+ 
Sbjct: 60  CEEGPIVVVMPENWWYRGIDSEDKVDELLDALENGEA 96


>gi|170734239|ref|YP_001766186.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3]
 gi|206559100|ref|YP_002229860.1| putative ferredoxin [Burkholderia cenocepacia J2315]
 gi|169817481|gb|ACA92064.1| ferredoxin-like protein [Burkholderia cenocepacia MC0-3]
 gi|198035137|emb|CAR51011.1| putative ferredoxin [Burkholderia cenocepacia J2315]
          Length = 105

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQRDPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|153953065|ref|YP_001393830.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555]
 gi|219853716|ref|YP_002470838.1| hypothetical protein CKR_0373 [Clostridium kluyveri NBRC 12016]
 gi|146345946|gb|EDK32482.1| 2Fe-2S ferredoxin [Clostridium kluyveri DSM 555]
 gi|219567440|dbj|BAH05424.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 102

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 90  VGTRAHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ 141
           V  + H+ VC ++         C  +    ++     ++  + L     G +      C 
Sbjct: 2   VNPKYHIFVCTSSRVNGKQQGFCFSKESVDIVSEFMEEVESRDL----SGEVMVTNTGCF 57

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           G C   P+V++      Y  +T E +EEI+D     +G+ ++
Sbjct: 58  GICNRGPIVVVYPEGIWYGGVTAEDVEEIMDKHIE-EGEVVK 98


>gi|113477689|ref|YP_723750.1| hypothetical protein Tery_4280 [Trichodesmium erythraeum IMS101]
 gi|110168737|gb|ABG53277.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 222

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148
           VG +A + VC  + C  RG  K+ +     + +  L       +  ++  C   C   P 
Sbjct: 137 VGKKAEILVCQKSDCEKRGASKICKALSKALSEHDLQD----QVKIKKTGCLKKCKAGPN 192

Query: 149 -MVMIGKDTYEDLTPERLEEIIDA 171
            +VM  K  Y  +    + ++I  
Sbjct: 193 IIVMPQKAKYSRIRSAEIPQVIQK 216


>gi|189346210|ref|YP_001942739.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
 gi|189340357|gb|ACD89760.1| ferredoxin, 2Fe-2S [Chlorobium limicola DSM 245]
          Length = 102

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP---LHRNSDGT--LSWEEVECQGACVN 146
            + H+ VC +     +G  + I   +  +   P      +  G   ++     C   C  
Sbjct: 4   PKHHIFVCASF--RAQGAPQGICHKKESLGLIPYLESELSDRGMSDVAVSATACLNLCEK 61

Query: 147 APMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
            P+V++        E  + ++++EI+DA   G+ 
Sbjct: 62  GPVVVVYPENFWYGEIDSEDKIDEILDALEEGEA 95


>gi|304317221|ref|YP_003852366.1| hypothetical protein Tthe_1785 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778723|gb|ADL69282.1| conserved hypothetical protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 81

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC  + C L+G   +I   +  I    L       +  +   C G C+ A  V I  
Sbjct: 2   VITVCVGSSCHLKGSYDVINELKKFIKDYNLED----RVELKADFCMGNCLRAVSVKIDD 57

Query: 155 DTYEDLTPERLEEIIDAFSTGQ 176
                + P  +E+    +  G 
Sbjct: 58  GKCLSIKPNNVEKFFREYVLGN 79


>gi|330818435|ref|YP_004362140.1| Ferredoxin-like protein [Burkholderia gladioli BSR3]
 gi|327370828|gb|AEA62184.1| Ferredoxin-like protein [Burkholderia gladioli BSR3]
          Length = 106

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 8   HHVFFCLNQRDPGADRPSCANCDAQSMQEYAKKR--VKELGLAGAGKVRINKAGCLDRCE 65

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +  + ++EI+++    GQ
Sbjct: 66  EGPVMVVYPEGTWYTYVDKQDIDEIVESHLRDGQ 99


>gi|116690914|ref|YP_836537.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424]
 gi|116649003|gb|ABK09644.1| ferredoxin-like protein [Burkholderia cenocepacia HI2424]
          Length = 105

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
 gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
          Length = 533

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           ++ C    C+  G + + E     I    L +     +    V C   C   P+V I ++
Sbjct: 22  IRCCTAAGCLSSGSQAVKENLLTSIKAAGLEQ----QVEVVGVGCMRLCCQGPLVEIDEN 77

Query: 156 ------TYEDLTPERLEEIIDAFSTGQGDTIR 181
                  Y+ +TP+   ++ID+   G+   ++
Sbjct: 78  KSDKITLYQQVTPQDAPKVIDSIK-GKNTNLK 108


>gi|148257146|ref|YP_001241731.1| ferredoxin, 2Fe-2S [Bradyrhizobium sp. BTAi1]
 gi|146409319|gb|ABQ37825.1| Ferredoxin, 2Fe-2S (AaFd4) [Bradyrhizobium sp. BTAi1]
          Length = 120

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 89  PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   + H  VC T          C   G + L +        +       G        C
Sbjct: 16  PQLYKYHAFVCLTQRPPGHPRGSCGALGVQPLWDRLTKT--IEAQRLTDIG---VTAAGC 70

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
            G C   PM+++      Y    PE ++EI+++         + G ++DR
Sbjct: 71  FGFCSAGPMMVVYPDGIWYRPTKPEDIDEIVESH-------FKQGKRVDR 113


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +  +    +  + VCG T C       ++ + + +I    L    D         C G C
Sbjct: 26  YDNADKNIKKTLLVCGGTGCRASRSLDIVNILKTEIKNAGLENTVD----VISTGCFGFC 81

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII 169
              P+V +      Y ++  ER + I+
Sbjct: 82  EKGPIVKVVPDNVFYVEVNTERAKLIV 108


>gi|291565748|dbj|BAI88020.1| ferredoxin-like protein [Arthrospira platensis NIES-39]
          Length = 118

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152
            V VC    C+  G ++ ++   +          +D   +  E   C G C   P V + 
Sbjct: 27  CVLVCQHQSCLRNGSQETLKAFED----------ADIPNVKVEASGCLGQCNIGPTVRVI 76

Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
             +  Y  + PE +E I       G+    +  P+I 
Sbjct: 77  PDETWYYRVQPEDVEAIASQHLQGGKPVQEKLNPRIH 113


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRN-------SDGTLSWEEVECQGA 143
           ++  V +C  T C+  G   + +     + + P    +        DG +  ++  C G 
Sbjct: 25  SKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEVHFGPEIAHGDGEIGIKKSGCHGF 84

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168
           C   P++ I      Y  +  E  EEI
Sbjct: 85  CEMGPLMRIEPQGILYTKVKLEDCEEI 111


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRN-------SDGTLSWEEVECQGA 143
           ++  V +C  T C+  G   + +     + + P    +        DG +  ++  C G 
Sbjct: 25  SKCRVLICAGTGCLSGGSGAIYDRMCELVGEHPDVEVHFGPEIAHGDGEIGIKKSGCHGF 84

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168
           C   P++ I      Y  +  E  EEI
Sbjct: 85  CEMGPLMRIEPQGILYTKVKLEDCEEI 111


>gi|134297082|ref|YP_001120817.1| ferredoxin-like protein [Burkholderia vietnamiensis G4]
 gi|134140239|gb|ABO55982.1| ferredoxin-like protein [Burkholderia vietnamiensis G4]
          Length = 105

 Score = 46.7 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGTWYTYVDQADIDEIVESHLRDGK 98


>gi|56477464|ref|YP_159053.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56313507|emb|CAI08152.1| Fe2-S2-type ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 106

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143
           + HV  C        T C       +    +++   +  K       G +   +  C   
Sbjct: 5   KHHVFFCCNQREPGDTCCNNHNATGMQTYAKDRIAALGLKGR-----GKIRINKAGCLDR 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           C   P++++      Y  +  E ++EIID 
Sbjct: 60  CDEGPVLVVYPDNVWYTYIDKEDIDEIIDE 89


>gi|297627550|ref|YP_003689313.1| hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296923315|emb|CBL57915.1| Hypothetical protein PFREUD_23990 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 263

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLSWEEVECQGA 143
            +P   R H+ VC    C  +G  +++E       ++            ++     C   
Sbjct: 177 QAPPPFRRHLLVCCGVRCNAQGSREVVESMVRTAKELGVVHDEV----LIT--RTLCLFP 230

Query: 144 CVNAPMVM--IGKDTYEDLTPERLEEII 169
           C  AP+V+          +TP +  EI+
Sbjct: 231 CNQAPVVVSYPDNQWRGGVTPAQAAEIV 258


>gi|182680473|ref|YP_001834619.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182636356|gb|ACB97130.1| ferredoxin, 2Fe-2S (AaFd4) [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 110

 Score = 46.7 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 89  PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEV 138
           P   + H+  C T          CM RG + L E    K+  K  P        +S    
Sbjct: 6   PQVFKYHIFTCSTKRPAGHPRGSCMERGAQPLWERLGQKLEAKQLPG-------VSMTMT 58

Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            C   C   P++++      Y    PE ++EI+ +
Sbjct: 59  GCLSFCQAGPLMVVYPEGIWYHPEKPEDIDEIVQS 93


>gi|299530595|ref|ZP_07044013.1| ferredoxin-like protein [Comamonas testosteroni S44]
 gi|298721418|gb|EFI62357.1| ferredoxin-like protein [Comamonas testosteroni S44]
          Length = 118

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
                G     H+  C          C L G +   + C+ K   K       G +   +
Sbjct: 6   NQDQAGGYYQRHIFFCLNERPNGEDCCALHGAKAGFDHCKRK--VKEEGLAGKGLVRVNK 63

Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   C   P+ ++  +   Y  +    ++EI+++    G+
Sbjct: 64  AGCLDRCAGGPVAVVYPEAVWYTFIDDSDIDEIVESHLKHGK 105


>gi|82702107|ref|YP_411673.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC
           25196]
 gi|82410172|gb|ABB74281.1| putative ferredoxin 2fe-2s protein [Nitrosospira multiformis ATCC
           25196]
          Length = 103

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 93  RAHVQVC------GTTPCMLRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACV 145
             HV  C      GT  C   G + + +  + +   K L   + +  +      C   C 
Sbjct: 5   HRHVFFCVNQREPGTLCCNNFGAQAMRDYAKER--VKALKLDSKNKRIRINNAGCLDRCN 62

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +  E ++EII+     G+
Sbjct: 63  EGPVIVVYPEDVWYTYVDKEDIDEIIEEHLKNGR 96


>gi|254251301|ref|ZP_04944619.1| Ferredoxin [Burkholderia dolosa AUO158]
 gi|124893910|gb|EAY67790.1| Ferredoxin [Burkholderia dolosa AUO158]
          Length = 105

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQRDPGAERPSCAQCDAQAMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G 
Sbjct: 65  EGPVMVVYPEGTWYTYVDRADIDEIVESHLRDGN 98


>gi|187922503|ref|YP_001894145.1| ferredoxin [Burkholderia phytofirmans PsJN]
 gi|187713697|gb|ACD14921.1| putative ferredoxin [Burkholderia phytofirmans PsJN]
          Length = 107

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 23/108 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     +++ E  + +   K L     G
Sbjct: 3   SFY----------KYHVFFCLNQRDPGAERPSCANCNAQEMQEYAKKR--VKKLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            +   +  C   C   P +++      Y  +    ++EI+D+  + G+
Sbjct: 51  QVRINKAGCLDRCELGPTLVVYPEGIWYTYVDESDIDEIVDSHLANGK 98


>gi|332298650|ref|YP_004440572.1| hypothetical protein Trebr_2026 [Treponema brennaborense DSM 12168]
 gi|332181753|gb|AEE17441.1| hypothetical protein Trebr_2026 [Treponema brennaborense DSM 12168]
          Length = 82

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIG 153
            ++ C  + C  +G  +++E+ +  I +  L       ++     C G C      + IG
Sbjct: 2   TIEACMGSSCHAKGAGRILELLKKAIKENGLE----NKVTLAGTLCLGRCGEPGANLKIG 57

Query: 154 KDTYEDLTPERLEEIID 170
            +    +T     E  D
Sbjct: 58  DEVITGITEANFAEFFD 74


>gi|237795238|ref|YP_002862790.1| hypothetical protein CLJ_B2007 [Clostridium botulinum Ba4 str. 657]
 gi|229262096|gb|ACQ53129.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 80

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G  K+I + +N I +  L       +  +   C G C     V +  
Sbjct: 3   IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGHCTEGVSVKVED 58

Query: 155 DTYEDLTPERLEE 167
             Y  +  E +EE
Sbjct: 59  KIYS-VNEENVEE 70


>gi|255086707|ref|XP_002509320.1| predicted protein [Micromonas sp. RCC299]
 gi|226524598|gb|ACO70578.1| predicted protein [Micromonas sp. RCC299]
          Length = 112

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           V+VC    C  RG  K        +  + +           E+ C G C   P V I  D
Sbjct: 37  VKVCTNKECK-RGGSKKTLALFEALGLEGVE--------IVEIRCLGECGMGPNVQINGD 87

Query: 156 ----TYEDLTPERLEEIIDAF 172
                    T + +++++D  
Sbjct: 88  DGPIINGVKTEDDVKKVVDRL 108


>gi|323138486|ref|ZP_08073555.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242]
 gi|322396282|gb|EFX98814.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocystis sp. ATCC 49242]
          Length = 112

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 16/109 (14%)

Query: 83  TQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS 134
                 PV  + HV  C            C+  G + L +  + K+  +P+    D  +S
Sbjct: 2   HMIAELPVVFKYHVFTCFQQRPPGHPRGSCVSAGGKPLWDRLQAKLTAQPI---PD--VS 56

Query: 135 WEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                C G C   P++++      Y   T   ++EII +  T +G+ + 
Sbjct: 57  ITATGCLGFCRAGPLMVVYPEGVWYTPRTEADIDEIIQSHFT-EGNPVE 104


>gi|107023828|ref|YP_622155.1| ferredoxin-like [Burkholderia cenocepacia AU 1054]
 gi|105894017|gb|ABF77182.1| ferredoxin-like protein [Burkholderia cenocepacia AU 1054]
          Length = 105

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV  C            C     + + E  + +   K L     G +   +  C   C 
Sbjct: 7   HHVFFCLNQREPGAERPSCAQCDAQTMQEYAKKR--VKELGLAGPGKVRINKAGCLDRCE 64

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
             P++++      Y  +    ++EI+++    G+
Sbjct: 65  EGPVMVVYPEGAWYTYVDQADIDEIVESHLRDGK 98


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
            ++ VCG T C     + +      +   K  +  +D  +   +  C G C   P+V + 
Sbjct: 5   HYILVCGGTGCESSSADDIFRNLHEE--AKNYNV-AD-KVQIVKTGCFGFCEKGPIVKVL 60

Query: 153 -GKDTYEDLTPERLEEIIDA 171
                Y ++ PE  ++II  
Sbjct: 61  PEDSFYVEVKPEDAKDIIAE 80


>gi|320333185|ref|YP_004169896.1| hypothetical protein Deima_0572 [Deinococcus maricopensis DSM
           21211]
 gi|319754474|gb|ADV66231.1| hypothetical protein Deima_0572 [Deinococcus maricopensis DSM
           21211]
          Length = 113

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMI 152
           AH+ VC  T C  RG   L     N + +  L      G++      C GAC + P++ +
Sbjct: 10  AHLLVCQHTNCASRGSALLHRALWNALERDGLAYYKRGGSVRLTSSGCLGACSHGPVLCV 69

Query: 153 GKDTYEDL 160
            +D    L
Sbjct: 70  YRDAGGRL 77


>gi|163846740|ref|YP_001634784.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
 gi|222524552|ref|YP_002569023.1| hypothetical protein Chy400_1276 [Chloroflexus sp. Y-400-fl]
 gi|163668029|gb|ABY34395.1| hypothetical protein Caur_1165 [Chloroflexus aurantiacus J-10-fl]
 gi|222448431|gb|ACM52697.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 82

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
           G L   E++C  AC + P VM+  D +  +TP++L EI+++
Sbjct: 32  GALCIVELDCMAACDDVPAVMLEYDYFPRVTPQQLIEIVES 72


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +CG T C+    + + E    ++ ++ +       +      C G C   P+V +  
Sbjct: 4   KILICGGTGCLSSKSKDIKENLEKELKERNI-----NDVEVVLTGCFGFCEKGPIVKVVP 58

Query: 153 GKDTYEDLTPERLEEIID 170
             + Y ++ PE  ++I++
Sbjct: 59  ANNFYIEVKPEDAKKIVE 76


>gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
 gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
          Length = 495

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 26/95 (27%)

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEV 115
           + +  I+++A    + Y     I +FY+   ++  G   ++  C    C  +  E     
Sbjct: 35  IDKKTIKLLARKFGIPYSETFSIVSFYSLLNVN--GK--NLLSCNAPCC--KNDELFDNA 88

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            +                      C G C N+P V
Sbjct: 89  IKTH--------------------CLGLCDNSPAV 103


>gi|332701929|ref|ZP_08422017.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay]
 gi|332552078|gb|EGJ49122.1| 2Fe-2S ferredoxin [Desulfovibrio africanus str. Walvis Bay]
          Length = 103

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 17/94 (18%)

Query: 95  HVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           H+ VC +          C  +G   L++     +    L R  DG +      C   C +
Sbjct: 8   HILVCASFRVSGDPKGVCHKKGSTGLLQYIEEGL----LDRGIDGLV--CATGCMKQCDD 61

Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTGQG 177
            P++++      Y+ +  E +++EI+DA   G+ 
Sbjct: 62  GPIMVVYPQGHWYKAVDSEGKIDEILDACENGEA 95


>gi|320334127|ref|YP_004170838.1| hypothetical protein Deima_1524 [Deinococcus maricopensis DSM
           21211]
 gi|319755416|gb|ADV67173.1| hypothetical protein Deima_1524 [Deinococcus maricopensis DSM
           21211]
          Length = 101

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 100 GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV--NAPMVMIGKDTY 157
                 LR  E L+EV  + +   P   ++DG          G     +AP+V +    Y
Sbjct: 29  DGLDPHLR--EALLEVIWDTLRISPGMVSADGNFELTLTR--GKDDPEDAPVVRLNGLPY 84

Query: 158 EDLTPERLEEII 169
             +TP+RL E++
Sbjct: 85  IRVTPQRLHELL 96


>gi|193213270|ref|YP_001999223.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
 gi|193086747|gb|ACF12023.1| ferredoxin, 2Fe-2S [Chlorobaculum parvum NCIB 8327]
          Length = 102

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 92  TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC +          C  +    LI    +++  + +   +          C   
Sbjct: 4   PKHHIFVCASFRAAGAPQGICHKKEALGLIPYLESELADRGMSDTA-----VSATACLNL 58

Query: 144 CVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
           C   P+V++        E  + ++++EI+DA   G+ 
Sbjct: 59  CEKGPVVVVYPENFWYGEIDSEDKIDEILDALEEGEA 95


>gi|150391757|ref|YP_001321806.1| hypothetical protein Amet_4065 [Alkaliphilus metalliredigens QYMF]
 gi|149951619|gb|ABR50147.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 78

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G   ++   ++ + +K L       ++ +   C G C  A  V I +
Sbjct: 3   TINICIGSACHLKGAYDVVNKFQSIVEEKALED----QVTIKAAFCLGECTKAVSVKIDE 58


>gi|46204209|ref|ZP_00050335.2| COG3411: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 98

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 103 PCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTY 157
            C  +G E L E  +    ++  K         +      C   C   P+++I      Y
Sbjct: 16  SCAQKGSEALREHMKDAQKRLGLKD--------VRINSAGCLDRCGKGPVMVIYPEGVWY 67

Query: 158 EDLTPERLEEIIDAF--STGQGDTIRPGPQ 185
              +   ++EI+D      G+ D +   P 
Sbjct: 68  SFHSVADIDEILDTHIVKGGRVDRLMLAPD 97


>gi|312131825|ref|YP_003999165.1| sucraseferredoxin family protein [Leadbetterella byssophila DSM
           17132]
 gi|311908371|gb|ADQ18812.1| Sucraseferredoxin family protein [Leadbetterella byssophila DSM
           17132]
          Length = 101

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 95  HVQVCGT---TPCMLRGCEK---LIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C      P    G E+   L+ + + K+ +K L++     +  ++  C   C   P
Sbjct: 6   HVFICTNDKVAPKKCCGSERGMILVNLFKEKMKEKGLNKT----MRAQKTGCLDVCAFGP 61

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
            +++      Y ++TPE ++EII++
Sbjct: 62  GMVVYPEGVFYGNVTPEDVDEIIES 86


>gi|148379789|ref|YP_001254330.1| hypothetical protein CBO1829 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933205|ref|YP_001384086.1| hypothetical protein CLB_1764 [Clostridium botulinum A str. ATCC
           19397]
 gi|153936655|ref|YP_001387626.1| hypothetical protein CLC_1771 [Clostridium botulinum A str. Hall]
 gi|148289273|emb|CAL83369.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929249|gb|ABS34749.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152932569|gb|ABS38068.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 80

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G  K+I + +N I +  L       +  +   C G C     V I  
Sbjct: 3   IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGYCTEGVSVKIQD 58

Query: 155 DTYEDLTPERLEE 167
             Y  +  E +EE
Sbjct: 59  KIYS-VNEENVEE 70


>gi|153940562|ref|YP_001391084.1| hypothetical protein CLI_1824 [Clostridium botulinum F str.
           Langeland]
 gi|168180403|ref|ZP_02615067.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168184887|ref|ZP_02619551.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|170754407|ref|YP_001781377.1| hypothetical protein CLD_2811 [Clostridium botulinum B1 str. Okra]
 gi|226949070|ref|YP_002804161.1| hypothetical protein CLM_1986 [Clostridium botulinum A2 str. Kyoto]
 gi|152936458|gb|ABS41956.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169119619|gb|ACA43455.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|182668649|gb|EDT80627.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182672079|gb|EDT84040.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226842396|gb|ACO85062.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295319131|gb|ADF99508.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 80

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G  K+I + +N I +  L       +  +   C G C     V I  
Sbjct: 3   IINICVGSACHLKGSYKVITLLQNFIGKNNLKD----KVEIKGSFCLGYCTEGVSVKIED 58

Query: 155 DTYEDLTPERLEE 167
             Y  +  E +EE
Sbjct: 59  KIYS-VNEENVEE 70


>gi|24158929|pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 gi|24158930|pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 46.3 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYE 158
            C  RG  ++ +    KI   P                    AC+  P+V++      Y 
Sbjct: 21  SCAQRGSREVFQAFMEKIQTDPQLFMTTV-----ITPTGSMNACMMGPVVVVYPDGVWYG 75

Query: 159 DLTPERLEEIIDAFSTGQGDTIR 181
            + PE ++EI++    G     R
Sbjct: 76  QVKPEDVDEIVEKHLKGGEPVER 98


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score = 45.9 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCR---NKIHQKPL-HRNSDGTLSWEEVECQGACVNAP--M 149
           + VC  T C  +G  K+ E  R    + + K    +  +      +  C G C + P  +
Sbjct: 28  IYVCVGTGCAAKGSIKVYEELRRIFKENNVKANLQKLEEKEERVRKTGCCGRCSSGPWVI 87

Query: 150 VMIGKDTYEDLTPERLEEIIDA 171
           VM     Y ++ PE ++EI + 
Sbjct: 88  VMPYGYFYSEVKPEDVKEIYEE 109


>gi|67922918|ref|ZP_00516415.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501]
 gi|67855268|gb|EAM50530.1| hypothetical protein CwatDRAFT_3848 [Crocosphaera watsonii WH 8501]
          Length = 197

 Score = 45.9 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-- 150
           + +C  + C  RG +KL  V       +  +         ++ ++  CQ  C  AP +  
Sbjct: 116 ILICNKSDCAKRGGKKLYGVLEKTISNLGLEKH-------VTIQKTGCQKRCGKAPNMIL 168

Query: 151 MIGKDTYEDLTPERLEEIIDA 171
           M G+  +    P+ +  +++ 
Sbjct: 169 MPGRSKHSKPNPKNIAGLLEE 189


>gi|300692698|ref|YP_003753693.1| ferredoxin [Ralstonia solanacearum PSI07]
 gi|299079758|emb|CBJ52434.1| putative ferredoxin [Ralstonia solanacearum PSI07]
          Length = 108

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C   G + + E  + +   K L  N +G +   +  C   C   
Sbjct: 7   HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P++++  +   Y  +  E ++EII +
Sbjct: 65  PVLVVYPEAVWYTFVDREDIDEIIQS 90


>gi|284052910|ref|ZP_06383120.1| hypothetical protein AplaP_15683 [Arthrospira platensis str.
           Paraca]
          Length = 118

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152
            V VC    C+  G ++ ++   +          +D   +  E   C G C   P V + 
Sbjct: 27  CVLVCQHQSCLRNGSQETLKAFED----------ADIPNVKVEASGCLGQCNIGPTVRVI 76

Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
             +  Y  + PE ++ I       G+    +  P+I 
Sbjct: 77  PDETWYYRVQPEDVQAIASQHLQGGKPVQEKLNPRIH 113


>gi|309389846|gb|ADO77726.1| hypothetical protein Hprae_1599 [Halanaerobium praevalens DSM 2228]
          Length = 82

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKP-LHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
           + +C  + C L+G EK+IE+ + +I +         G+       CQG C     + I  
Sbjct: 4   IIICVGSSCHLKGSEKVIEIFKEEIKKHNLDQVEISGSF------CQGNCTEGVNIEING 57

Query: 155 DTYEDLTPERLEEIIDA 171
              E +  E  +EI   
Sbjct: 58  QKIEAVNEENAQEIFKK 74


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV--MIG 153
           + +C  T C   G  K+ E        K     +      +   C G C N P+V  M  
Sbjct: 5   ILICCGTGCRANGSMKVAEALSEAAEAKGGR--AQVIAEVKTTGCNGFCENGPIVKIMPD 62

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  + P+  EEII+ 
Sbjct: 63  NLVYYKVKPKDAEEIIEK 80


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIH------QKPLH--RNSDGTLSWEEVECQGA 143
           ++  V +C  T C+  G   + +     +               + DG +  ++  C G 
Sbjct: 24  SKCRVLICAGTGCLAGGSGDIYKRMCELVEENPDVEVHFGEEIAHGDGEIGIKKSGCHGF 83

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEI 168
           C   P++ I      Y  +  E  +EI
Sbjct: 84  CEMGPLMRIEPQGILYTKVQLEDCDEI 110


>gi|325000401|ref|ZP_08121513.1| hypothetical protein PseP1_16617 [Pseudonocardia sp. P1]
          Length = 217

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
              H+ VC    C++ G  +                   G        C G C   P+V+
Sbjct: 142 PHRHLFVCRGPRCLVHGAGETHRALSAAAKGTTTQVTPCG--------CLGPCNLGPLVV 193

Query: 152 IGKDTYEDLTPERLEEII 169
            G   +  ++P   +E++
Sbjct: 194 DGATWHRAVSPLDADELV 211


>gi|293374978|ref|ZP_06621273.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325843327|ref|ZP_08167910.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1]
 gi|292646388|gb|EFF64403.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325489356|gb|EGC91729.1| hypothetical protein HMPREF9402_2065 [Turicibacter sp. HGF1]
          Length = 84

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM-IG 153
            +++C  + C L+G  ++I++ ++    +         L      C G C  A  VM   
Sbjct: 3   TIKICVGSSCHLKGSYEVIQIFQSL--IEKHQLQE--VLELRAAFCLGHCTEAVSVMGPN 58

Query: 154 KDTYEDLTPERLEEIIDA 171
           ++    ++P+  E++ +A
Sbjct: 59  EEVLA-VSPDDAEKLFEA 75


>gi|296160366|ref|ZP_06843183.1| Sucraseferredoxin family protein [Burkholderia sp. Ch1-1]
 gi|295889347|gb|EFG69148.1| Sucraseferredoxin family protein [Burkholderia sp. Ch1-1]
          Length = 107

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     +++ E  + +   K L     G
Sbjct: 3   SFY----------KYHVFFCLNQREPGAERPSCANCNAQEMQEHAKKR--VKKLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            +   +  C   C   P +++      Y  +    ++EI+D+
Sbjct: 51  QVRINKAGCLDRCELGPTLVVYPEGVWYTYVDESDIDEIVDS 92


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 113 IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIID 170
           ++  ++++ +K L    D  +   E  C G C   P+V++      Y  + PE + EI++
Sbjct: 1   MKAFKDELVKKGL----DREVMLVETGCHGMCEMGPVVVVYPEGAFYCRVMPEDVPEIVE 56

Query: 171 A 171
            
Sbjct: 57  E 57


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 13/122 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
               V VC  T  +  G  +++        K   K    + +     ++  C+G C    
Sbjct: 7   DHVEVHVCMGTAGVASGAIEVMAALDEQFEKHGLKNAE-SKERNCEAKQTGCRGLCARD- 64

Query: 149 MVMIG-------KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLL 201
            V+I          TYE +T E +  I++    G     +   + D            L 
Sbjct: 65  -VLIDVYMPGEKSITYEHVTAEMVPTIVEEHIIGGQVVEKWAAKADYFQFYDKQKRYVLH 123

Query: 202 DN 203
           D 
Sbjct: 124 DC 125


>gi|326790681|ref|YP_004308502.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541445|gb|ADZ83304.1| NADH dehydrogenase (ubiquinone) 24 kDa subunit [Clostridium
           lentocellum DSM 5427]
          Length = 84

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-K 154
           +++C  + C ++G   +I   +     +         +  + V C G C  A  V I   
Sbjct: 3   LKICIGSACHIKGSYNVISAFQQL--IEEYQVFE--QVELKAVFCLGHCTEAVSVQIDQG 58

Query: 155 DTYE 158
           D Y 
Sbjct: 59  DIYS 62


>gi|83746893|ref|ZP_00943940.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551]
 gi|207727768|ref|YP_002256162.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2]
 gi|207742172|ref|YP_002258564.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609]
 gi|300705315|ref|YP_003746918.1| ferredoxin [Ralstonia solanacearum CFBP2957]
 gi|83726478|gb|EAP73609.1| Ferredoxin 2Fe-2S [Ralstonia solanacearum UW551]
 gi|206591009|emb|CAQ56621.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum MolK2]
 gi|206593560|emb|CAQ60487.1| ferredoxin 2fe-2s protein [Ralstonia solanacearum IPO1609]
 gi|299072979|emb|CBJ44336.1| putative ferredoxin [Ralstonia solanacearum CFBP2957]
          Length = 108

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C   G + + E  + +   K L  N +G +   +  C   C   
Sbjct: 7   HHVFFCLNEREDGSRCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P++++  +   Y  +  E ++EII +
Sbjct: 65  PVLVVYPEAVWYTFVDREDIDEIIQS 90


>gi|326333064|ref|ZP_08199315.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1]
 gi|325949138|gb|EGD41227.1| hypothetical protein NBCG_04503 [Nocardioidaceae bacterium Broad-1]
          Length = 223

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G    V +C    C  +G E++       +         D  L      CQ  C  AP+
Sbjct: 128 PGHVRQVLICRGPRCTAKGSEEVARAV--ILGAMEAGLGDDDLL-ITHTGCQFPCNQAPV 184

Query: 150 --VMIGKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQ 185
             V      Y ++       I+ D    G+       P+
Sbjct: 185 LSVQPDDVWYGNVEAAAARVIVRDHLDGGRPVEAYRLPR 223


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C     EK+I     ++    L       +   +  C G C   P+V++
Sbjct: 5   RSHVLVCGGTGCTSSNSEKIISEFNVQLANNNLQ----NEVKIVKTGCFGLCAQGPIVVV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +  E ++EI + 
Sbjct: 61  YPEGAMYTMVKVEDIKEITEE 81


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKP--LHRNSDGTLSWEEVECQGACVNAPM 149
            R  V VC  T  +  G  +++     +  +         +     +   C+G C     
Sbjct: 7   DRIEVHVCMGTAGVASGGAEVMAAFEEEFKKHGLIGEV-KERNCKVKATGCRGLCARD-- 63

Query: 150 VMIG-------KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
           V++        + TYE +TPE +  I++          +   + D            L D
Sbjct: 64  VLVDIHIPGQEEVTYEHVTPEIVPTIVEEHILKGEVVKKWAAKKDYYDFYKLQKRYVLAD 123

Query: 203 N 203
            
Sbjct: 124 C 124


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS--WEEVECQGACVNAPMVMI 152
            V VC    C+      + +  R+KI         D  +    +E  CQG C   PM+ I
Sbjct: 17  TVLVCCGPGCLANDSPAIAKALRSKI----DEAGLDVKVHPLIKETGCQGLCEKGPMIRI 72

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQ 176
                 Y  ++   +E I++    +G+
Sbjct: 73  VPDDIAYYKVSLNDVEAIVEKTLRSGE 99


>gi|55379593|ref|YP_137443.1| colbalt chelase thioredoxin [Haloarcula marismortui ATCC 43049]
 gi|55232318|gb|AAV47737.1| colbalt chelase thioredoxin [Haloarcula marismortui ATCC 43049]
          Length = 407

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
           HV VC    C   G   ++E  R            D  ++     C G C   PMV +  
Sbjct: 318 HVAVCTNQTCAQDGAPAVLERLRQAARDSDQC---DARIT--RSSCLGRCGEGPMVAVYP 372

Query: 153 GKDTYEDLTPERLEEIIDA 171
               Y  +  E   EI+ +
Sbjct: 373 DGVWYGGVEDEDAAEIVSS 391


>gi|303239625|ref|ZP_07326150.1| ferredoxin [Acetivibrio cellulolyticus CD2]
 gi|302592796|gb|EFL62519.1| ferredoxin [Acetivibrio cellulolyticus CD2]
          Length = 122

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            Q  L        V V   T  +  G   ++     +++++ +       ++     C G
Sbjct: 16  DQMSLRKSNDGMRVIVGMATCGIAAGARPVMSAFVEELNKRNIT-----DVTVTMTGCIG 70

Query: 143 ACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
            C   P+V I      K TY  +TPE+   I+  
Sbjct: 71  VCRLEPVVEIIDKDGNKVTYVKMTPEKAARIVAE 104


>gi|27376876|ref|NP_768405.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|12620475|gb|AAG60751.1|AF322012_56 Fer2 [Bradyrhizobium japonicum]
 gi|27350018|dbj|BAC47030.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
          Length = 115

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 85  FQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           F L P   R HV  C T          C   G + L +     I  + L    D   +  
Sbjct: 7   FHL-PQLYRHHVFACNTQRPPNHPHGSCGASGAQALWDRMGKAIEAQGL---DDIGFA-- 60

Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
              C G C + P++++      Y   TPE ++EI+          ++ G ++DR
Sbjct: 61  TAGCLGFCNSGPLLVVYPDGVWYRATTPEDVDEIV-------ISHLKHGQRVDR 107


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +CG T C     +++     N +  +      D  +      C G C   P+V++
Sbjct: 5   RSHVLICGGTGCTSSKSKEIKHELVNHL-VRLG---LDKEVQVVMTGCFGLCEAGPIVIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +       I + 
Sbjct: 61  YPEGTFYSKVQVSDAVRIAEE 81


>gi|17545048|ref|NP_518450.1| ferredoxin 2FE-2S protein [Ralstonia solanacearum GMI1000]
 gi|17427338|emb|CAD13857.1| putative ferredoxin 2fe-2s protein [Ralstonia solanacearum GMI1000]
 gi|299068145|emb|CBJ39362.1| putative ferredoxin [Ralstonia solanacearum CMR15]
          Length = 108

 Score = 45.9 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C   G + + E  + +   K L  N +G +   +  C   C   
Sbjct: 7   HHVFFCLNEREDGARCCADFGAKAMQEYAKKR--CKELGINGEGRVRINKAGCLDRCELG 64

Query: 148 PMVMIGKDT--YEDLTPERLEEIIDA 171
           P++++  +   Y  +  E ++EII +
Sbjct: 65  PVLVVYPEAVWYTFVDREDIDEIIQS 90


>gi|298490568|ref|YP_003720745.1| nucleic acid-binding OB-fold tRNA/helicase-type protein ['Nostoc
           azollae' 0708]
 gi|298232486|gb|ADI63622.1| nucleic acid binding, OB-fold, tRNA/helicase-type ['Nostoc azollae'
           0708]
          Length = 188

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 83  TQFQLSPVG----------TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
           T +++ PVG          T A + VC  + C+ RG + L+      +            
Sbjct: 80  TAYRVQPVGFCPIHNHLPETTAKIMVCQKSGCIKRGGKGLLSKLEKTL-CDRGLLE---K 135

Query: 133 LSWEEVECQGACVNAP--MVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +  E  +CQ  C +AP  ++++GK  Y  + P+ +   ++    G   T +
Sbjct: 136 VKIEHTDCQKRCSSAPNCVLILGKKQYRKIHPDAIASFLENHLKGFSKTGK 186


>gi|270158044|ref|ZP_06186701.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968]
 gi|289163688|ref|YP_003453826.1| ferredoxin 2fe-2s protein [Legionella longbeachae NSW150]
 gi|269990069|gb|EEZ96323.1| ferredoxin 2Fe-2S [Legionella longbeachae D-4968]
 gi|288856861|emb|CBJ10672.1| putative ferredoxin 2fe-2s protein [Legionella longbeachae NSW150]
          Length = 105

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+ +C          C   G E+  +  ++++    L  +  G +   +  C G C + P
Sbjct: 7   HIFLCTNKKAAGKQCCANSGGEEFFDYIKSRL--LELEMHGPGKVRISKTGCLGRCSSGP 64

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
            ++I      Y   +   ++EII+ 
Sbjct: 65  CIVIYPEGVWYTYSSFADIDEIIEK 89


>gi|281356044|ref|ZP_06242537.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
 gi|281317413|gb|EFB01434.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
          Length = 86

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + +C  + C  RG E+ I V    + +       +  +      CQ  C + P V+
Sbjct: 2   AKPKIVICLGSSCFARGNEENIRVVEAYLAENSYR--DEVEVELSGTLCQARCADGPNVI 59

Query: 152 IGKDTYEDLTPERLEEII 169
           I   TY  + P  + +++
Sbjct: 60  IDGVTYSKVDPGVMLDLL 77


>gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 575

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG T C     +K+I++    +  + +       +      C G C   P++ I   
Sbjct: 35  ILVCGGTGCHANESDKIIKILEALLKSRGMAE----QVKVIRTGCFGFCEQGPIIKIEPD 90

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  +  +  + I++ 
Sbjct: 91  NVFYVRVGLKDAKAIVEE 108


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + +V +CG T C     +++       +  +    +SD  +   +  C G C   P+V +
Sbjct: 4   KQYVLICGGTGCESNKSDQVYRNLLGLL--EKEGISSD--VQVVKTGCFGFCEQGPIVKV 59

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179
              +  Y  + PE  EEI+ +    G+  T
Sbjct: 60  LPEESFYVQVKPEDAEEIVKEHLIKGRPVT 89


>gi|221635789|ref|YP_002523665.1| NADH:ubiquinone oxidoreductase, nadh-binding [Thermomicrobium
           roseum DSM 5159]
 gi|221158137|gb|ACM07255.1| NADH:ubiquinone oxidoreductase, nadh-binding [Thermomicrobium
           roseum DSM 5159]
          Length = 172

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VC    C  +G +++    R ++ +  L    D  +     +    C   P +++
Sbjct: 5   RAHVLVCTANHCSQKGAQQVAARLRLELKRAGL----DAEIMVNTCDSIDLCDIGPNIVV 60

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                 Y ++    L E+I++   GQ    R
Sbjct: 61  YPQGWIYRNVQVGDLPEVIESLRHGQHPVER 91


>gi|113866330|ref|YP_724819.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525106|emb|CAJ91451.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 106

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144
            HV  C          C     + + E  +    ++          G +   +  C   C
Sbjct: 7   HHVFFCLNQREAGENCCANHNAQAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 62

Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171
              P++++  +   Y  +    ++EIID+
Sbjct: 63  ELGPVLVVYPEAIWYTFVDEHDIDEIIDS 91


>gi|224368088|ref|YP_002602251.1| Thx [Desulfobacterium autotrophicum HRM2]
 gi|223690804|gb|ACN14087.1| Thx [Desulfobacterium autotrophicum HRM2]
          Length = 108

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC        P   C  +     +    N+I         +G +      C   
Sbjct: 4   PKHHILVCASFRPSGEPKGKCHRKNSMDFLPYIENEI-IDRG---LEGVI-VSSTCCLKL 58

Query: 144 CVNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTG 175
           C   P+++I      Y ++T E  ++EI+DA   G
Sbjct: 59  CDEGPILVIYPENIWYGNVTSEDAIDEILDALEDG 93


>gi|312880917|ref|ZP_07740717.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310784208|gb|EFQ24606.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 99

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 131 GTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII 169
           G +   +  C G C  AP++      Y  +T  +L++++
Sbjct: 56  GKVQVAKTSCLGDCAGAPVLEFRGQVYSRMTEGKLKDLL 94


>gi|319955893|ref|YP_004167156.1| 2fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511]
 gi|319418297|gb|ADV45407.1| 2Fe-2S ferredoxin [Nitratifractor salsuginis DSM 16511]
          Length = 126

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           GT+   +  C G C   P++++  G   Y +L  E+++ II+    G
Sbjct: 55  GTVQPVQTGCLGRCQQGPVMLVEPGHTMYVNLNKEKIDRIIEEHILG 101


>gi|195953767|ref|YP_002122057.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933379|gb|ACG58079.1| putative ferredoxin 2Fe-2S protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 109

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 95  HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           HV VC            C  +G   +     + + Q P       T++     C G C  
Sbjct: 4   HVFVCVNQRPPGHPLGSCAEKGSRDVYTAFADALQQDPQLM---MTVAVTPTGCLGPCAM 60

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P V++      Y  +  E + EII++
Sbjct: 61  GPTVVVYPEGIWYGGVKKEDVNEIIES 87


>gi|119492672|ref|ZP_01623851.1| hypothetical protein L8106_00175 [Lyngbya sp. PCC 8106]
 gi|119453010|gb|EAW34181.1| hypothetical protein L8106_00175 [Lyngbya sp. PCC 8106]
          Length = 111

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 18/99 (18%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQGACVNAPMVM 151
            V+VC    C+ +G +K+++  +            D  +S    E   C G C   P V 
Sbjct: 20  CVRVCQNQTCLRQGSQKVLQAFQ------------DADISDIIIEASGCMGQCSVGPTVK 67

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
           +   +  Y  +    +  II+     GQ    +  P+I 
Sbjct: 68  VTPDETWYYRVQQTDVPIIIEQHLKGGQPVEEKLNPRIH 106


>gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 667

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEV 138
           TF   ++    G    V VC    CM RG E++++          +      G++  E  
Sbjct: 577 TF-EIYKPDQKGN-IKVSVCFGNSCMQRGSEEILKHI-----ISFVENGKYKGSVGIEVS 629

Query: 139 ECQGACVNAPMVMIGKDTYEDLTPERLEEIIDA 171
            C   C   P+V +   T E  T +  EE I  
Sbjct: 630 MCLEKCFRGPVVKVANQTLEHCTTKAAEEAIQE 662


>gi|168017648|ref|XP_001761359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687365|gb|EDQ73748.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 629

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC    C   G ++++   +  I +          LS    +C G C +AP V +  
Sbjct: 533 KIEVCTVGKCRRGGSQEILAAFQESIPESSN-------LSATSCKCMGKCKSAPNVRVKN 585

Query: 155 -----DTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
                  +  ++ E ++ +++    G   +  P P
Sbjct: 586 SDGISQLHSHVSAEDVDTLLE-LHFGMQPSGNPMP 619


>gi|187251163|ref|YP_001875645.1| hypothetical protein Emin_0753 [Elusimicrobium minutum Pei191]
 gi|186971323|gb|ACC98308.1| hypothetical protein Emin_0753 [Elusimicrobium minutum Pei191]
          Length = 79

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V VC  + C L+G  +++E  +          N    +      C G C     V +  
Sbjct: 2   KVTVCIGSSCHLKGSRQVVEELQYL----VAENNLKEKVELSGTFCMGNCQKGVCVTVNG 57

Query: 155 DTYEDLTPER 164
           + +  ++P+ 
Sbjct: 58  ENFS-VSPQE 66


>gi|186686526|ref|YP_001869722.1| hypothetical protein Npun_F6517 [Nostoc punctiforme PCC 73102]
 gi|186468978|gb|ACC84779.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 110

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V+VC    C  +G  K+       +         D  ++     C G C N PMV++  
Sbjct: 21  CVRVCQNRTCKKQGAAKVFAAF-TALPI------PD--VTVTASSCLGQCGNGPMVLVLP 71

Query: 153 GKDTYEDLTPERLEEIIDAFSTG 175
               Y  + P  +  +I+    G
Sbjct: 72  DMVWYSGVKPHEVSLLIENHLLG 94


>gi|328951489|ref|YP_004368824.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
 gi|328451813|gb|AEB12714.1| putative ferredoxin [Marinithermus hydrothermalis DSM 14884]
          Length = 105

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148
           TRAH+ +C    C  RG + +     + +             GTL   E  C GAC   P
Sbjct: 8   TRAHLLLCTGPRCRARGADTVFRYLWDALEREGLAYYKTG--GTLRLTESSCLGACCCGP 65

Query: 149 MVM--IGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRIS 190
           +++       Y  +T     E+  A   G+       P+ +R  
Sbjct: 66  ILLAYPAGAWYHGVTVPAALEVARALHEGRDL-----PETNRFD 104


>gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
 gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
          Length = 683

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V+VC  T C LR  + +I+     +    L    D  +  +   C   C   P V +G 
Sbjct: 596 TVRVCAGTGCFLRNSQAIIQGLMKHVEANDL----DDKVQVQASFCFEMCGEGPNVAVGD 651

Query: 155 DTYEDLTPE----RLEEIIDAFSTGQ 176
                 T +     +   +   ++GQ
Sbjct: 652 TIINHATLDVVINAVHAELAQMASGQ 677


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           + +V +CG T C     +++       +  +    +SD  +   +  C G C   P+V +
Sbjct: 4   KQYVLICGGTGCESNKSDQVYRNLLGLL--EKEGISSD--IQVVKTGCFGFCEQGPIVKV 59

Query: 153 --GKDTYEDLTPERLEEII-DAFSTGQGDT 179
              +  Y  + PE  EEI+ +    G+  T
Sbjct: 60  LPEESFYVQVKPEDAEEIVKEHLIKGRPVT 89


>gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
 gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMI 152
            +  C  T C   G   LI   R +  ++       G +   E  C G C   P+  +  
Sbjct: 29  RIFCCSGTGCHATGSIPLIAALREEAARQG------GCVQVIETGCNGFCALGPVVIMQP 82

Query: 153 GKDTYEDLTPER 164
           G   Y  +  E 
Sbjct: 83  GGILYCKVRVED 94


>gi|217077619|ref|YP_002335337.1| NADP-reducing hydrogenase, subunit b [Thermosipho africanus TCF52B]
 gi|217037474|gb|ACJ75996.1| NADP-reducing hydrogenase, subunit b [Thermosipho africanus TCF52B]
          Length = 124

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           ++   G R  + V   T  +  G +  ++     +       N D  +S  +  C G C 
Sbjct: 22  KMREEGKRGRIIVAMGTCGIAAGAKDTLKAIVETLS----ELNID-DISVVQSGCMGLCE 76

Query: 146 NAPMVMI--GKD---TYEDLTPERLEEIIDA 171
             P + +    +    Y  +TPE  + II +
Sbjct: 77  VEPTIKVELDGEIPVIYGHVTPENAKRIIKS 107


>gi|296272233|ref|YP_003654864.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299]
 gi|296096408|gb|ADG92358.1| 2Fe-2S ferredoxin [Arcobacter nitrofigilis DSM 7299]
          Length = 120

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 80  TFYTQFQ---LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
           TFY  F+    +P G            C+      L      K+ +K L     G +   
Sbjct: 10  TFY-MFKCEQSAPPGMPKP-------SCVTEDNRDLYNYLAQKMMEKGLM----GPVQAI 57

Query: 137 EVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
              C G C   P++++  G   Y  L+ E++++I++    G
Sbjct: 58  RTSCLGRCQMGPVLLVEPGHTMYCKLSKEKIDKIVEEHIIG 98


>gi|206603963|gb|EDZ40443.1| Probable ferredoxin [Leptospirillum sp. Group II '5-way CG']
          Length = 112

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C LR  E+++ + R ++       N        +  C  AC
Sbjct: 5   RYHVFACTNKRDPEHPRGSCQLRNAEEILSLFREELK----QANIPQPFRINKSGCLDAC 60

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P+  +      Y   T E + +++  
Sbjct: 61  EEGPVFAVYPDGVYYRLKTREDVRQVVRQ 89


>gi|307823873|ref|ZP_07654101.1| Sucraseferredoxin family protein [Methylobacter tundripaludum SV96]
 gi|307735167|gb|EFO06016.1| Sucraseferredoxin family protein [Methylobacter tundripaludum SV96]
          Length = 107

 Score = 45.1 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 89  PVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   +  V VC            C   GC +++    N+I  + L       ++     C
Sbjct: 2   PRPEKH-VFVCTQNRPQGHPRGSCASSGCAEIMNEFMNEIQARNLFE----KIALTNTGC 56

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            G C+  P V++      Y  L  + ++ II+    G
Sbjct: 57  MGPCMMGPSVLVYPEGIMYGKLKKDDVKTIIEQHLLG 93


>gi|169828909|ref|YP_001699067.1| putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41]
 gi|168993397|gb|ACA40937.1| Putative 2Fe-2S ferredoxin [Lysinibacillus sphaericus C3-41]
          Length = 173

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + H+ +C  + CM +  E++ +  R++I +  L    D  +      C G C +A +V
Sbjct: 58  GMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCNGRCKDACVV 113


>gi|76801206|ref|YP_326214.1| cobalamin cluster protein CbiX 1 ( ferredoxin-like iron-sulfur
           protein) [Natronomonas pharaonis DSM 2160]
 gi|76557071|emb|CAI48645.1| conserved cobalamin cluster protein CbiX 1 (probable
           ferredoxin-like iron-sulfur protein) [Natronomonas
           pharaonis DSM 2160]
          Length = 396

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 14/87 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           HV VC    C   G   ++E  R  +            D  ++     C   C + P V 
Sbjct: 309 HVTVCTNRTCADAGAATVLERLRQAVRDRGI-------DARIT--RSSCLDRCGDGPNVA 359

Query: 152 I--GKDTYEDLTPERLEEIIDAFSTGQ 176
           +      Y  + PE ++ I  +    +
Sbjct: 360 VYPDNVWYGGVAPEDVDRIASSLERDR 386


>gi|120586949|ref|YP_961294.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564363|gb|ABM30106.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris DP4]
          Length = 100

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 94  AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ VC +         C+ +G   L+     +I  + L              C   C  
Sbjct: 6   HHILVCMSFRGLEPKGTCIRKGAPDLVAHLDAEIAARGL-----NAF-VSTTGCLQFCDK 59

Query: 147 APMVMI--GKDTYEDLTPER-LEEIIDAFSTGQGDT 179
            P++++      Y  +  E  ++ I+DA   G+  T
Sbjct: 60  GPVLVVYPQGHWYGGVDDEDAIDAILDALEAGEPCT 95


>gi|33863432|ref|NP_894992.1| hypothetical protein PMT1162 [Prochlorococcus marinus str. MIT
           9313]
 gi|33640881|emb|CAE21337.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 115

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 94  AHVQVCGTT---PCMLRG-CEKLIEVCRNKIHQKPLH--RNSDGTLSWEEVECQGACVNA 147
            H+ +C T     C             + +I    L      +G +   +V+C   C + 
Sbjct: 7   HHLLLCATANKAACCSADVGNASWANLKKQIKHHDLENIDRPEGVVLRSKVDCLRICNDG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQIDRI 189
           P+++I      Y  +TPER+E I+     G    +   IR  PQ  R 
Sbjct: 67  PILLIWPDGIWYGGVTPERIESIVKEHVLGGQPIEAWIIRRTPQQQRH 114


>gi|257095119|ref|YP_003168760.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047643|gb|ACV36831.1| Fe2-S2-type ferredoxin [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 102

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R HV  C        T C   G        +++I +  L     G +   +  C   C +
Sbjct: 5   RHHVFFCCNQRGEGETCCNNAGATAAQMYAKDRIGELRLKGA--GKVRINKAGCMDRCDS 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P++++      Y  +  E +EEII  
Sbjct: 63  GPVLVVYPDAVWYSYVDNEDIEEIIQE 89


>gi|326201390|ref|ZP_08191262.1| ferredoxin [Clostridium papyrosolvens DSM 2782]
 gi|325988958|gb|EGD49782.1| ferredoxin [Clostridium papyrosolvens DSM 2782]
          Length = 123

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + +  G +  V +     C +  G   ++     +I+++ L       ++     C G C
Sbjct: 21  RSNEKGIKVVVAMAT---CGIAAGARPVMNKFIEEINKRNLE-----NVTVSITGCIGVC 72

Query: 145 VNAPMVMI---GKD--TYEDLTPERLEEII 169
              P+V I        TY ++TPE+ E ++
Sbjct: 73  KMEPVVEILDKDDKKVTYVNMTPEKAERVV 102


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD--TY 157
            C +  G  +  E  + ++ ++ L       +  + V C G C   P++ I    +  TY
Sbjct: 13  SCGIAAGARETYEAVKEELEKRNLD------IKLKIVGCVGMCYREPLLDIITDNEIITY 66

Query: 158 EDLTPERLEEIIDA 171
             +TP+R+  II+ 
Sbjct: 67  GHVTPDRVPRIIEE 80


>gi|126652145|ref|ZP_01724327.1| cobalamin biosynthesis protein [Bacillus sp. B14905]
 gi|126591053|gb|EAZ85164.1| cobalamin biosynthesis protein [Bacillus sp. B14905]
          Length = 123

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + H+ +C  + CM +  E++ +  R++I +  L    D  +      C G C +A +V
Sbjct: 8   GMKTHLFICNGSSCMNKDGEEITQAIRDEIQRNAL----DKEIHTTRTRCNGRCKDACVV 63


>gi|257059647|ref|YP_003137535.1| hypothetical protein Cyan8802_1801 [Cyanothece sp. PCC 8802]
 gi|256589813|gb|ACV00700.1| hypothetical protein Cyan8802_1801 [Cyanothece sp. PCC 8802]
          Length = 198

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            +  + +C  + C   G  +L E  +  + +  L  +    ++ ++  CQ  C  AP + 
Sbjct: 111 KKGKILLCNKSDCAKNGGRQLYEELQKTLCRLGLEDS----VTIQKTSCQKRCSKAPNMI 166

Query: 151 -MIGKDTYEDLTPERLEEII 169
            M GK       P+ ++ ++
Sbjct: 167 LMPGKAKCSKPNPKTIDNLL 186


>gi|198284910|ref|YP_002221231.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667590|ref|YP_002427591.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249431|gb|ACH85024.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519803|gb|ACK80389.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 105

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 18/94 (19%)

Query: 95  HVQVCGTT------PCMLRG-CEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGAC 144
           H+ VC          C   G  E++    +     +            +      C G C
Sbjct: 9   HLFVCLNQRENGERACNNSGIAEEVFHAAKQHAKALGIH-GE----KQVRVNRCGCLGRC 63

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175
              P+ ++      Y  +  + + EI+++    G
Sbjct: 64  DEGPIAVVYPDAVWYTYVDADDIREIVESHLRDG 97


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGAC 144
                R  + V   T  M  G  K++        K+            +  +   C G C
Sbjct: 16  KKKLDRPRIIVGLGTCGMAAGGTKVMAAIETEVEKLGLD---------VDLDFTSCIGMC 66

Query: 145 VNAPMVMIG-----KDTYEDLTPERLEEIIDA 171
              P+V +G        Y  + PE + ++I++
Sbjct: 67  YAEPVVEMGLPGAASVVYGGVYPEDVAQLIES 98


>gi|188584740|ref|YP_001916285.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349427|gb|ACB83697.1| ferredoxin-like protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 124

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            V V   T  +  G  +++     +++++ L       ++  +  C G C N   V++  
Sbjct: 30  MVIVGMGTCGIAAGAREVMNALLEELNKRSLK-----EITVTQTGCIGMCENE--VLVDV 82

Query: 154 ------KDTYEDLTPERLEEII-DAFSTGQ 176
                 + TY ++TPE +  I+ D    G+
Sbjct: 83  KKQGEERITYGNVTPEDIPRIVNDHLINGK 112


>gi|162448515|ref|YP_001610882.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56']
 gi|161159097|emb|CAN90402.1| sirohydrochlorin cobaltochelatase [Sorangium cellulosum 'So ce 56']
          Length = 395

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R HV VCG   C+ RG   L+E  R  + Q    +     +      C G C   P V +
Sbjct: 302 RKHVLVCGNADCVDRGSLALLESVRRLVKQAGQQQ----QIRVTRTSCMGRCGEGPTVAV 357

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y  +  E  +++++    G
Sbjct: 358 YPDGVWYRGVRDEDAKDLVEEHLLG 382


>gi|126658203|ref|ZP_01729354.1| hypothetical protein CY0110_11732 [Cyanothece sp. CCY0110]
 gi|126620574|gb|EAZ91292.1| hypothetical protein CY0110_11732 [Cyanothece sp. CCY0110]
          Length = 88

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
            + VC    C   G ++L+    +           D  +      C G C N P  +++ 
Sbjct: 16  TILVCQGRCCRKDGSKQLLMAFES-------QTPPD--VQIIPCGCLGQCGNGPNIVILP 66

Query: 153 GKDTYEDLTPERL 165
            K  Y+ ++ + +
Sbjct: 67  EKKLYQRVSAKDV 79


>gi|311747469|ref|ZP_07721254.1| NAD-reducing hydrogenase, alpha subunit [Algoriphagus sp. PR1]
 gi|126574827|gb|EAZ79198.1| NAD-reducing hydrogenase, alpha subunit [Algoriphagus sp. PR1]
          Length = 80

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + VC  + C   G + L +  +  +  K       G       +C   C +AP+++
Sbjct: 4   KRKLIFVCSGSDCKKAGIKSLKKELKQAM--KEGEL--KGQCKMITTKCMDFCKSAPVMI 59

Query: 152 IGKDTYEDLTPERLEEIIDA 171
           +G    +  T  ++ E I  
Sbjct: 60  VGNHICKKATKTKVLEQIKK 79


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  + C+  G  KL+   +++I ++ L +     +   E  C G C   P+++I
Sbjct: 25  RPCIAVCTGSGCLALGAAKLVAALKSEIKEQGLEQ----RIEVRETGCPGFCERGPLIVI 80

Query: 153 --GKDTYEDLTPERLEEIIDA 171
              +  Y  + P   +E+I +
Sbjct: 81  YPEETCYLKVQPTDAKEVIAS 101


>gi|147920060|ref|YP_686183.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I]
 gi|110621579|emb|CAJ36857.1| 2Fe-2S ferredoxin [uncultured methanogenic archaeon RC-I]
          Length = 102

 Score = 44.7 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 95  HVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           H+ +C ++         C  +   ++++    +I  + L     G +      C G C  
Sbjct: 7   HIFICTSSRHTGQQKGFCHSKAGVEVLQKFMEEIEMRELG----GEVFVNNTGCFGICEK 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+V++      Y+ +T + + EII++   G
Sbjct: 63  GPIVVVYPDNVWYKSVTSDDVTEIIESHIEG 93


>gi|251772858|gb|EES53417.1| probable ferredoxin [Leptospirillum ferrodiazotrophum]
          Length = 108

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C  RG  ++ +    ++  +    +     +     C G C     +++      Y  +
Sbjct: 23  SCAQRGAMEVFQAMAMQL--EQGGLSR--RFAVTNTGCLGPCDTGANMIVYPDGIMYGGV 78

Query: 161 TPERLEEIIDAFSTGQGDTIR 181
             E + EII     G     R
Sbjct: 79  KAEDVPEIISEHLVGGKPVER 99


>gi|194334440|ref|YP_002016300.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271]
 gi|194312258|gb|ACF46653.1| ferredoxin, 2Fe-2S [Prosthecochloris aestuarii DSM 271]
          Length = 103

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 22/98 (22%)

Query: 94  AHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVECQG 142
            H+ VC       TP   C  +    LI    +++        SD  ++        C  
Sbjct: 6   HHILVCASFRAQGTPQGICHKKESLSLIPYLESEL--------SDRDMTDVVVSATGCLN 57

Query: 143 ACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
            C   P+V++        E  + E+++EI+DA   G+ 
Sbjct: 58  VCEKGPIVVVYPENHWYGEIDSEEKIDEILDALEEGEA 95


>gi|298244919|ref|ZP_06968725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297552400|gb|EFH86265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 246

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 2   SVRRLAEEEFQPSSFSFSEE-SAIWVNEVISRYPPSRCQSAVIP-LLMRAQEQEGWVSRA 59
             + +A     P       +     V+ +I ++P     +A +P LL    +  G++S  
Sbjct: 126 FNKPVAPCVTTPVKDELEPQIDLSQVDALIEQWPYD---AASLPGLLDAIMDMYGYLSLQ 182

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPV 90
           A + V     +    V  IAT   +F+ +P 
Sbjct: 183 AAKRVVQARGVDLSDVFGIATMSPKFKPAPA 213


>gi|251770990|gb|EES51574.1| probable ferredoxin [Leptospirillum ferrodiazotrophum]
          Length = 106

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           L+    R H+  C    C+ +G E++  + +N +   P   +S   L   +  C   C +
Sbjct: 2   LTKAKIRHHILFCTGNKCLGKGGEEMKILAQNIVDATP-ELSS---LLVSKTGCVNMCES 57

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
            PMV++      + D+T  R + ++++    + +   PG
Sbjct: 58  GPMVLLYPEGYWFSDMTEGRTKLLLESIRENR-EAPLPG 95


>gi|300861283|ref|ZP_07107370.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis TUSoD Ef11]
 gi|295112907|emb|CBL31544.1| Respiratory-chain NADH dehydrogenase 24 Kd subunit. [Enterococcus
           sp. 7L76]
 gi|300850322|gb|EFK78072.1| putative NAD-dependent formate dehydrogenase, gamma subunit
           [Enterococcus faecalis TUSoD Ef11]
 gi|315145701|gb|EFT89717.1| hypothetical protein HMPREF9495_00660 [Enterococcus faecalis
           TX2141]
 gi|315160212|gb|EFU04229.1| hypothetical protein HMPREF9513_03189 [Enterococcus faecalis
           TX0645]
          Length = 47

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 138 VECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFS 173
           + C GAC   P++ I    +  LT E++ ++I    
Sbjct: 5   IPCIGACDLGPVIKIKDTVFSQLTEEKIYQLIQHLQ 40


>gi|283782440|ref|YP_003373195.1| ferredoxin-like protein [Pirellula staleyi DSM 6068]
 gi|283440893|gb|ADB19335.1| ferredoxin-like protein [Pirellula staleyi DSM 6068]
          Length = 112

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C            C + G E+L    + ++ ++ L     G +      C   C 
Sbjct: 6   HHIFICTNQREKGHKRGSCDVDGEERLKSAFKKELDRRGLK----GEVRANSAGCLDQCE 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P+++I      Y ++  + + +II+ 
Sbjct: 62  LGPVIVIYPQAIWYGNVQVKDVPKIIEE 89


>gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1048

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+ ++ +   T  +  G  ++ E    +  ++         L+     C G C N P++ 
Sbjct: 2   TKTNIYIGMATCGLASGARRIHEAVEKESRERGYE------LAIHPTGCIGMCHNEPILE 55

Query: 152 IG-----KDTYEDLTPERLEEIIDA 171
           +      + TY  +TPE +  I+D+
Sbjct: 56  VEVPGQPRITYAQVTPESVPAILDS 80


>gi|303246370|ref|ZP_07332649.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ]
 gi|302492080|gb|EFL51955.1| 2Fe-2S ferredoxin [Desulfovibrio fructosovorans JJ]
          Length = 103

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 23/98 (23%)

Query: 94  AHVQVC-----GTTP---CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQG 142
             + VC            C  +G   L+      +                      C  
Sbjct: 8   YLINVCASFRVKGEAKGICHKKGSHNLMGYFEEGVLDRGIDA---------RIVSTGCMK 58

Query: 143 ACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
            C   P+V++           + ++++EI+DA   G+ 
Sbjct: 59  QCEEGPIVVVMPENWWYRGIDSEDKVDEILDALENGEA 96


>gi|218246604|ref|YP_002371975.1| hypothetical protein PCC8801_1773 [Cyanothece sp. PCC 8801]
 gi|218167082|gb|ACK65819.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 198

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            +  + +C  + C   G  +L E  +  + +  L  +    ++ ++  CQ  C  AP + 
Sbjct: 111 KKGKILLCNKSDCAKNGGRQLYEELQKTLCRLGLEES----VTIQKTSCQKRCSKAPNMI 166

Query: 151 -MIGKDTYEDLTPERLEEII 169
            M GK       P+ ++ ++
Sbjct: 167 LMPGKAKCSKPNPKTIDNLL 186


>gi|226356214|ref|YP_002785954.1| hypothetical protein Deide_12790 [Deinococcus deserti VCD115]
 gi|226318204|gb|ACO46200.1| Hypothetical protein Deide_12790 [Deinococcus deserti VCD115]
          Length = 85

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN---APMVMIGKDTYEDLTPERLE 166
           E L++     +   P    +DG +     +C G  V    AP V +    Y ++TPERL 
Sbjct: 19  EDLLDAVWTALRISPGMVTADGNVELALCQC-GQGVLPEDAPFVRVDGREYRNVTPERLS 77

Query: 167 EII 169
            ++
Sbjct: 78  TLM 80


>gi|307297599|ref|ZP_07577405.1| NADP-reducing hydrogenase, subunit B [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916859|gb|EFN47241.1| NADP-reducing hydrogenase, subunit B [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 125

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G R  V V   T  +  G +  +    + + +K +       +S  +  C G C   P +
Sbjct: 27  GKRGKVIVAMGTCGIAAGAKDTLRAIVDSLEEKGID-----DVSVVQSGCFGLCDAEPTI 81

Query: 151 MI-----GKDTYEDLTPERLEEIIDAFSTG 175
            +         Y  +TP + + +++    G
Sbjct: 82  EVHLEGSDPIIYGHVTPAQAKRVVEQHIVG 111


>gi|170759372|ref|YP_001787151.1| hypothetical protein CLK_1211 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406361|gb|ACA54772.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 80

 Score = 44.3 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G  K+I + +N I +  L       +  +   C G C     V +  
Sbjct: 3   IINICVGSACHLKGSYKVITLLQNFIEKNNLKD----KVEIKGSFCLGHCTEGVSVKVED 58

Query: 155 DTYEDLTPERLEE 167
             Y  +  E +EE
Sbjct: 59  KIYS-VDEENVEE 70


>gi|124514844|gb|EAY56355.1| probable ferredoxin [Leptospirillum rubarum]
          Length = 112

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 14/89 (15%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           R HV  C            C LR  E+++ + R ++       N        +  C  AC
Sbjct: 5   RYHVFACTNKRDPEHPRGSCQLRNAEEVLSLFREELK----QANIPQPFRINKSGCLDAC 60

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P+  +      Y   T E + +++  
Sbjct: 61  EEGPVFAVYPDGVYYRLKTREDVRQVVRQ 89


>gi|303248864|ref|ZP_07335113.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302489733|gb|EFL49666.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 80

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  + C  RG +K + +    +       +   ++      C+  C   P + I
Sbjct: 2   KHEIVICMGSSCFARGNKKHLLMIEQYLA--DHGLSE--SVVLTGSRCEDQCTTGPNIRI 57

Query: 153 GKDTYEDLTPERLEEII 169
               Y ++  ERL E++
Sbjct: 58  DGQLYGEINGERLMELL 74


>gi|224373698|ref|YP_002608070.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH]
 gi|223589008|gb|ACM92744.1| ferredoxin, 2Fe-2S [Nautilia profundicola AmH]
          Length = 111

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 87  LSPVGTRAHVQVCG--------TTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW-EE 137
           +     +  + +C            C+  G E L +  +     K +    D  ++W   
Sbjct: 1   MQMPKPKNVIYMCQVKRPPSFPKPSCVREGKEDLFQFTQQ----KMMEMGIDPMVNWIVP 56

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             C   C   P++M+  G+  Y DL  E++E+I+     G G+ ++
Sbjct: 57  TGCLNRCNFGPVMMVEPGQYMYVDLDKEKIEKILKEHIIG-GNPVK 101


>gi|145590144|ref|YP_001156741.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048550|gb|ABP35177.1| putative ferredoxin 2fe-2s protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 102

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 94  AHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            H+  C         C  R     L E  +N+   K L  +  G +   +  C   C + 
Sbjct: 5   HHLFFCLNQRSNGEDCCDRHNAFALFEYAKNR--VKELGLSGPGKIRVNKAGCLDRCADG 62

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P++++      Y  +  + +EEII +
Sbjct: 63  PVMVVYPQGVWYTLVDQDDVEEIIQS 88


>gi|288939936|ref|YP_003442176.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180]
 gi|288895308|gb|ADC61144.1| ferredoxin, 2Fe-2S [Allochromatium vinosum DSM 180]
          Length = 109

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 11/103 (10%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            H+  C          C       + +  + +   K    +    +      C G CV+ 
Sbjct: 6   HHIFFCTNRREDGRQCCAQSNASNMRDYLKRR--AKDEGLSGPSGVRVNTAGCLGRCVDG 63

Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQID 187
           P +++      Y     + LEEI+ +    G+       P   
Sbjct: 64  PTIVVYPDAVWYTYADEQDLEEILSEHLKGGRVVERLRLPDSG 106


>gi|121603112|ref|YP_980441.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2]
 gi|120592081|gb|ABM35520.1| ferredoxin-like protein [Polaromonas naphthalenivorans CJ2]
          Length = 123

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 95  HVQVC----GTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           H+  C       PC   +G ++  + C++    K       G +   +  C   C   P+
Sbjct: 23  HIFFCLNQRTGEPCCADQGAQQAFDRCKSL--VKAAGLAGPGKVRVNKAGCLDRCAGGPV 80

Query: 150 VMIGKDT--YEDLTPERLEEIIDA 171
            ++  +   Y  +    ++EI+++
Sbjct: 81  AVVYPEAVWYSYVDASDIDEIVES 104


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVC-----RNKIHQKPL--HRNSDGTLSWEEVECQGAC 144
            +  + VC  T C+  G  ++ E       +  ++          D ++  ++  C G C
Sbjct: 22  EKIKILVCSGTGCIASGSLEIYEEMLRLMKKEGLNCSVNLEEEPHDSSIGMKKSGCHGFC 81

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLL 201
              P++ I      Y  +  E  +EII+       +TI+ G  I+R+     G G  +  
Sbjct: 82  EMGPLLRIEPWGYLYIKVKVEDCKEIIE-------ETIKKGQCIERLIYKKDGKGYKTQA 134

Query: 202 DNNSKKRGKK 211
           +    K+  +
Sbjct: 135 EIPFYKKQTR 144


>gi|313203907|ref|YP_004042564.1| 2fe-2S ferredoxin [Paludibacter propionicigenes WB4]
 gi|312443223|gb|ADQ79579.1| 2Fe-2S ferredoxin [Paludibacter propionicigenes WB4]
          Length = 102

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 19/95 (20%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGT-LSWEEVECQGAC 144
            H+ VC +          C  +G   L++             +  G  ++     C   C
Sbjct: 6   YHILVCNSFRIAGDAQGACNKKGASDLLQYISE-------EASDRGLDVAVSTTACLNVC 58

Query: 145 VNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQ 176
              P+++I      Y  +  E  ++EI DA    +
Sbjct: 59  SQGPVMVIHPNNFWYGGVESEEIIDEIFDALEEDE 93


>gi|302816314|ref|XP_002989836.1| hypothetical protein SELMODRAFT_450953 [Selaginella moellendorffii]
 gi|300142402|gb|EFJ09103.1| hypothetical protein SELMODRAFT_450953 [Selaginella moellendorffii]
          Length = 236

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            R  V+VC  T C   G  + ++  +N          +   +S E   C G C + P  +
Sbjct: 25  KRREVRVCTHTTCRKSGSLQTLQALQNL---------APAAVSVESCGCLGRCGSGPNLV 75

Query: 150 VMIGKDTYEDL-TPERLEEIID 170
           ++  +       TP      +D
Sbjct: 76  LLPDQRLVSYCNTPAHAARFLD 97


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + +CG T C+    +++ +       +   K +              C G C   P+V 
Sbjct: 6   KILICGGTGCLSSKSDEIKKNLEKCIAEYDIKDIE--------VVLTGCFGFCEKGPIVK 57

Query: 152 I--GKDTYEDLTPERLEEIID 170
           I      Y ++ PE  EEII 
Sbjct: 58  IIPENTFYIEVKPEDAEEIIK 78


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG   C   G + LI+     I ++ +       +    V C G C   P V++   
Sbjct: 39  IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  +    ++ I+D 
Sbjct: 94  GIFYTRVKLSDVKSIVDK 111


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
            H+ VC  T C        +   +     +     +D  +    V C G C   P+V++ 
Sbjct: 25  VHILVCAGTGCQSNKSLNTVAALQQA--VEDHGV-AD-RVKVVPVGCFGFCRMGPVVVVY 80

Query: 153 -GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQ 185
            G+  Y ++ P+    II     G    +     P P+
Sbjct: 81  PGQTFYCEVQPQHAPVIIQQHVLGGQPVEALLYAPNPR 118


>gi|254785688|ref|YP_003073117.1| ferredoxin 2Fe-2S [Teredinibacter turnerae T7901]
 gi|237684290|gb|ACR11554.1| ferredoxin, 2Fe-2S [Teredinibacter turnerae T7901]
          Length = 106

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C            C  RG E +      ++ Q+ L       ++  +  C G C 
Sbjct: 6   HHIFICMQKRPPGHPRGSCGERGSEAVFNAFSQQLIQRNLQ-----NVALTQTGCLGPCQ 60

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
               V++      Y  + P+ + +II+    G
Sbjct: 61  AGANVLVYPSGVMYGWVEPDDVPKIIEQHILG 92


>gi|193214873|ref|YP_001996072.1| ferredoxin-like protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088350|gb|ACF13625.1| ferredoxin-like protein [Chloroherpeton thalassium ATCC 35110]
          Length = 122

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 19/90 (21%)

Query: 92  TRAHVQVC-------GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE--CQ 141
            +  V VC           C +R G E ++   R +I ++            E VE  C 
Sbjct: 8   EKKRVYVCHKLRPETDARSCCIRRGSESVLLAFREEIGKQHCE-------QIEAVESKCL 60

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEII 169
           GAC    +V++      Y  +T   + EI+
Sbjct: 61  GACTEGCVVLVHPDNIWYGKVTEADVAEIV 90


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score = 44.0 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           V +CG T C       + E     +  + +       +      C G C   P+V+I   
Sbjct: 38  VMICGGTGCTSSDSMFIAEAFEQAVASQGIQD----KIEIVRTGCFGLCELGPVVIIYPE 93

Query: 154 KDTYEDLTPERLEEIIDA 171
           +  Y  +  + + EI+D 
Sbjct: 94  EVFYNRVKVKDVAEIVDK 111


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score = 44.0 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG   C   G + LI+     I ++ +       +    V C G C   P V++   
Sbjct: 39  IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  +    ++ I+D 
Sbjct: 94  GIFYTRVKLSDVKNIVDK 111


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score = 44.0 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--G 153
           + VCG   C   G + LI+     I ++ +       +    V C G C   P V++   
Sbjct: 39  IVVCGGAGCEATGAKSLIDEFNKYIEEEKIE-----NVVVVPVGCIGLCETGPNVVVYPE 93

Query: 154 KDTYEDLTPERLEEIIDA 171
              Y  +    ++ I+D 
Sbjct: 94  GIFYTRVKLSDVKNIVDK 111


>gi|302387720|ref|YP_003823542.1| hypothetical protein Closa_3392 [Clostridium saccharolyticum WM1]
 gi|302198348|gb|ADL05919.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 125

 Score = 44.0 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + V   T  +  G   ++    N    +  H       S  +  C G C   P+V I
Sbjct: 27  RTRILVGMATCGIASGARPVLNTLSNL--VQENHMTD--RFSVTQTGCIGLCQYEPIVEI 82

Query: 153 -----GKDTYEDLTPERLEEI 168
                 K TY  +TPE+ EE+
Sbjct: 83  LEPGKDKITYIKMTPEKAEEV 103


>gi|188591034|ref|YP_001795634.1| hypothetical protein RALTA_A0242 [Cupriavidus taiwanensis LMG
           19424]
 gi|170937928|emb|CAP62912.1| conserved hypothetical protein; putative FERREDOXIN 2FE-2S
           [Cupriavidus taiwanensis LMG 19424]
          Length = 106

 Score = 44.0 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGAC 144
            HV  C          C     + + E  +    ++          G +   +  C   C
Sbjct: 7   HHVFFCLNQREAGENCCANYNAKAMQEYAKKRCKELGIAGGE----GRVRINKAGCLNRC 62

Query: 145 VNAPMVMIGKDT--YEDLTPERLEEIIDA 171
              P++++  +   Y  +    ++EIID+
Sbjct: 63  ELGPVLVVYPEAIWYTYVDEHDIDEIIDS 91


>gi|332529903|ref|ZP_08405854.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624]
 gi|332040600|gb|EGI76975.1| ferredoxin-like protein [Hylemonella gracilis ATCC 19624]
          Length = 113

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R H+  C          C     E     C+ +        +  G +   +  C   C  
Sbjct: 10  RQHIFFCLNQRANGEASCGDHQAEAAFAHCKKQ--VHEAGLSGKGQVRVNKAGCLDRCAG 67

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ-GDTIRPGPQIDR 188
            P+ ++   +  Y  +  + ++EI+++    G+  + +   P++ R
Sbjct: 68  GPVAVVYPEETWYTYVDLKDIDEIVESHLKQGKVVERLLLSPEVGR 113


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 87  LSPVGTRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           L  +  +  +++      C +  G   L ++   KI +  L       +   +  C G C
Sbjct: 17  LKKLKPKNKIRISVGLATCGISVGGALLYDLLEKKIKEFGLE----NKVELSKTGCIGFC 72

Query: 145 VNAPMVMI---GKDTY--EDLTPERLEEIIDAFSTGQGDTIR 181
              P+V I   GK       +TPE ++EI+   +  +    +
Sbjct: 73  KEEPIVNIKIPGKAIVVLHRVTPEDVDEILKTIADDEYKFPK 114


>gi|296533445|ref|ZP_06896028.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296266225|gb|EFH12267.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 117

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQG 142
              P G R          C  RG E L +  +    ++  K         +   +  C  
Sbjct: 20  NRRPDGHRRG-------SCAARGSEALKDYMKARAKELGLKG--------IRVNQAGCLD 64

Query: 143 ACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            C   P+++I      Y   T E ++EI+ A
Sbjct: 65  RCEFGPVIVIYPEGIWYRAETREDVDEILQA 95


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIE---VCRNKIHQKPLHRNSD-GTLSWEEVECQGACVN 146
           G    V VC  T C+  G +K+ E        I    +    D   +   +  CQG C  
Sbjct: 22  GYTCRVLVCSGTGCIASGAQKIYEEMSRLCEGIEGVAVEMQKDVPHVGIVKTGCQGLCEL 81

Query: 147 APMVMIG--KDTYEDLTPERLEEIIDA 171
            P++ I      Y  +  +   EI++ 
Sbjct: 82  GPLMRIEPYDYQYVHVQVDDCREIVEK 108


>gi|220929647|ref|YP_002506556.1| ferredoxin [Clostridium cellulolyticum H10]
 gi|219999975|gb|ACL76576.1| ferredoxin [Clostridium cellulolyticum H10]
          Length = 123

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 90  VGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            G +  V +     C +  G   +++    +I+Q+ L       ++    +C G C   P
Sbjct: 25  KGIKVVVAMAT---CGIAAGARPVMKAFIEEINQRNL-----NNVTVSITDCIGVCKLEP 76

Query: 149 MVMI-GKD----TYEDLTPERLEEII 169
           +V I  KD    TY ++TPE+ + ++
Sbjct: 77  VVEILDKDGKKVTYVNMTPEKAQRVV 102


>gi|30249826|ref|NP_841896.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180863|emb|CAD85785.1| putative ferredoxin 2fe-2s protein [Nitrosomonas europaea ATCC
           19718]
          Length = 102

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C     +++ +  + +   K L  +  G +      C   C   
Sbjct: 6   HHVFFCINQRANGERCCNDHHAQEMRDYAKAR--IKELKLSGKGKIRINNAGCLDRCSEG 63

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           P+++I   +  Y  +  E ++EII++    G+
Sbjct: 64  PVIVIYPEEVWYTYVDQEDIDEIIESHLQNGK 95


>gi|222481336|ref|YP_002567572.1| hypothetical protein Hlac_3465 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454712|gb|ACM58975.1| hypothetical protein Hlac_3465 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 116

 Score = 44.0 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC---V 145
           HV VC          C     + + +     +    +  +    +   E  C G C    
Sbjct: 16  HVLVCTNARDSEYAACADAHGDAVYDAVEAWLRDHGVFWSP---VQLAETTCLGLCSADG 72

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            A  +      Y D+TPE + E++
Sbjct: 73  TAIAIQPRNRWYSDVTPEDVPELL 96


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV +C  T C+  G + L E    ++  K L     G +   E  C G C   P++++
Sbjct: 7   RSHVLICTGTGCVSSGAKTLEESLEEELAAKDL----SGEIKIVETGCHGFCEKGPIMIV 62

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y ++  E + EI++ 
Sbjct: 63  YPEGVFYCEVQAEDVPEIVEE 83


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRN----------KIHQKPLHRNSDGTLSWEEVECQ 141
           +R  + +C  T C+  G  ++                +   +  H +  G L  ++  C 
Sbjct: 24  SRCRILICAGTGCLAGGSGEIYRRMSELAEENPDIDVEFGPEIAHGS--GPLEVKKSGCH 81

Query: 142 GACVNAPMVMIG--KDTYEDLTPERLEEI 168
           G C   P++ I      Y  + PE   EI
Sbjct: 82  GFCEMGPLMRIEPAGILYTKVKPEDCNEI 110


>gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
 gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
          Length = 529

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ-----GDTIRP 182
           C G+C   PMV I      YE + PE  + I+ A + G+     GD +RP
Sbjct: 62  CIGSCGQGPMVEIAPEGTLYEYVRPEDADAIVAAINGGECSVQRGDPLRP 111


>gi|94984131|ref|YP_603495.1| hypothetical protein Dgeo_0022 [Deinococcus geothermalis DSM 11300]
 gi|94554412|gb|ABF44326.1| Ferredoxin [Deinococcus geothermalis DSM 11300]
          Length = 111

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMV 150
           TR H+ VC    C  RG   L +   N + +  L      G++   E  C GAC   P +
Sbjct: 8   TRGHLLVCQGQNCQARGSALLYKALWNHLERAALAYYKQGGSVRLTESGCLGACSFGPAL 67

Query: 151 MI 152
            +
Sbjct: 68  CV 69


>gi|189500688|ref|YP_001960158.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides BS1]
 gi|189496129|gb|ACE04677.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides BS1]
          Length = 103

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 92  TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140
            + H+ VC +          C  +   +L+    +++        SD  ++        C
Sbjct: 4   PKHHILVCASFRSQGAPQGICHKKESLQLLPYLESEL--------SDRDMTDVVVSATGC 55

Query: 141 QGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
              C   P+V+I        E  + E+++EI+DA   G+ 
Sbjct: 56  LNVCEKGPIVVIHPENHWYKEIDSEEKIDEILDALEEGEA 95


>gi|146281723|ref|YP_001171876.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri A1501]
 gi|145569928|gb|ABP79034.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri A1501]
          Length = 106

 Score = 44.0 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C            C  +G E L +     +  +       G ++     C G C 
Sbjct: 6   YHIFLCLQRRAEGHPRGSCAAKGGEALFDAFSQAL-IRRNLI---GRIALTGTGCLGPCQ 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               V+I  G   Y  + P  ++ I+     G+    +  P
Sbjct: 62  AGANVLIYPGALMYSWVEPADVDSILTHLLEGEPFADKLTP 102


>gi|300697246|ref|YP_003747907.1| ferredoxin protein [Ralstonia solanacearum CFBP2957]
 gi|299073970|emb|CBJ53507.1| putative ferredoxin protein [Ralstonia solanacearum CFBP2957]
          Length = 109

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E     + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y +L    +  I+D    G
Sbjct: 62  YPDGVWYRNLDAASVRRIVDEHLAG 86


>gi|299068985|emb|CBJ40233.1| putative ferredoxin protein [Ralstonia solanacearum CMR15]
          Length = 109

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E     + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y +L    +  I+D    G
Sbjct: 62  YPDGVWYRNLDAASVRRIVDEHLAG 86


>gi|299537832|ref|ZP_07051121.1| putative 2Fe-2S ferredoxin [Lysinibacillus fusiformis ZC1]
 gi|298726811|gb|EFI67397.1| putative 2Fe-2S ferredoxin [Lysinibacillus fusiformis ZC1]
          Length = 123

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G + H+ +C  + CM +  E++    R++I ++ L    D  +      C G C +A +V
Sbjct: 8   GMKTHLFICNGSSCMKKDGEEITLAIRDEIQRQAL----DQEIHTTRTRCNGRCKDACVV 63


>gi|295675326|ref|YP_003603850.1| putative ferredoxin [Burkholderia sp. CCGE1002]
 gi|295435169|gb|ADG14339.1| putative ferredoxin [Burkholderia sp. CCGE1002]
          Length = 107

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     + + E  + +   K L     G
Sbjct: 3   SFY----------KHHVFFCLNQRDPGAERPSCANCNAQAMQEYAKKR--VKQLGLAGPG 50

Query: 132 TLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA 171
            +   +  C   C   P +++  +   Y  +    ++EI+++
Sbjct: 51  QVRINKAGCLDRCELGPALVVYPEAVWYTYVDESDIDEIVES 92


>gi|119899657|ref|YP_934870.1| ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
 gi|119672070|emb|CAL95984.1| probable ferredoxin 2Fe-2S protein [Azoarcus sp. BH72]
          Length = 108

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 89  PVGTRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
           P   +  + VC            C  +GC ++ +        + L        +     C
Sbjct: 2   PKPKKHVL-VCVQGRPPGHPRGSCQQKGCGEVHQAFLEAFQARNLW----NEFAVTNTGC 56

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            G C+  P V++      Y  +T   +  IID    G     R
Sbjct: 57  LGPCMAGPSVLVYPDAVMYGGVTAADVGTIIDEHLIGGTPVER 99


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 14/90 (15%)

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GK--DTYEDLTP 162
           G + +  +   ++         +   + E+  C G C   P+V +         YE++T 
Sbjct: 47  GADDVYGLLSAELG-------PNDDATVEKTGCMGFCDREPLVEVIRPDGVSIIYENVTQ 99

Query: 163 ERLEEIIDAFSTGQGDTIRPGPQIDRISSA 192
           E   ++  A   G+      G    R  + 
Sbjct: 100 EDASQLAGAVEDGE--LPAEGALAARSHAE 127


>gi|209528066|ref|ZP_03276544.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209491490|gb|EDZ91867.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 118

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 14/97 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMVMI- 152
            V VC    C+  G E  ++   +          +D   +  E   C G C   P V + 
Sbjct: 27  CVLVCQHQSCLRNGSEGTLKAFED----------ADVPNVKVEASGCLGQCNIGPTVRVI 76

Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
             +  Y  + PE  + I       G+    +  P+I 
Sbjct: 77  PDETWYYRVQPEDAKAIATQHLQGGKPVQEKLNPRIH 113


>gi|83747210|ref|ZP_00944253.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551]
 gi|207739071|ref|YP_002257464.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|83726185|gb|EAP73320.1| Ferredoxin, 2Fe-2s [Ralstonia solanacearum UW551]
 gi|206592443|emb|CAQ59349.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 109

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E     + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y +L    +  I+D    G
Sbjct: 62  YPDGVWYRNLDAASVRRIVDEHLAG 86


>gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum]
          Length = 1048

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+ ++ +   T  +  G  ++ E    +  ++         L+     C G C N P++ 
Sbjct: 2   TKTNIYIGMATCGLASGARRIQEAVEKESRERGYE------LAIHPTGCIGMCHNEPILE 55

Query: 152 IG-----KDTYEDLTPERLEEIIDA 171
           +      + TY  +TPE +  I+++
Sbjct: 56  VEVPGQPRITYAQVTPESVPAILES 80


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + +CG T C+    +++ +       + + K +              C G C   P+V 
Sbjct: 6   KILICGGTGCLSSKSDEIKKNLEKYIAEYNVKDVE--------VVLTGCFGFCEKGPIVK 57

Query: 152 I--GKDTYEDLTPERLEEIID 170
           I      Y ++ PE  EEII 
Sbjct: 58  IVPENTFYIEVKPEDAEEIIK 78


>gi|187779576|ref|ZP_02996049.1| hypothetical protein CLOSPO_03172 [Clostridium sporogenes ATCC
           15579]
 gi|187773201|gb|EDU37003.1| hypothetical protein CLOSPO_03172 [Clostridium sporogenes ATCC
           15579]
          Length = 81

 Score = 44.0 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  + C L+G  K+I + +N I +  L       +  +   C G C     V +G 
Sbjct: 3   TINICVGSACHLKGSYKVITLLQNFIEKNNLKD----KVEIKGSFCLGHCTEGVSVNVGD 58

Query: 155 DTYEDLTPERLEE 167
             Y  +  E  EE
Sbjct: 59  KIYS-VNEENAEE 70


>gi|167761229|ref|ZP_02433356.1| hypothetical protein CLOSCI_03634 [Clostridium scindens ATCC 35704]
 gi|167660895|gb|EDS05025.1| hypothetical protein CLOSCI_03634 [Clostridium scindens ATCC 35704]
          Length = 90

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C  + C +RG + +IE        K     +D  +      C GAC     V I +
Sbjct: 9   KVLICIGSSCHVRGSKDVIETFTRLT--KEHRDVAD--IELSGSFCMGACSKGVSVKIRE 64

Query: 155 DTYEDLTPERLEE 167
           + Y  + P   E+
Sbjct: 65  NIY-HVKPGDAED 76


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150
            V VC  T C+  G +K+ +        +    +    D   +   +  CQG C   P++
Sbjct: 26  RVLVCSGTGCIASGAQKIYDEMAKLCENLDWVSVEMQKDVPHVGVVKTGCQGLCELGPLM 85

Query: 151 MIG--KDTYEDLTPERLEEIIDA 171
            I      Y  +  E  +EI++ 
Sbjct: 86  KIEPYDYQYVHVQVEDCKEIVER 108


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score = 44.0 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           +L+    +  + V   T  +  G +K+ +   N +  K L       +      C G C 
Sbjct: 14  RLAEKAKKTIIVVGMGTCGIAAGGDKVWQALENAVKNKNLD------IELVYSGCIGLCY 67

Query: 146 NAPMVMIG-----KDTYEDLTPERLEEIIDAFS-TGQGDTIRPGPQIDRISSAPAGGLTS 199
             P++ +      +  Y ++  E   +I++  +  G+  +         ++  P  G T 
Sbjct: 68  VEPIMEVHRPDMPRVIYGNVNGETALKILEEHALNGKVVSDLA------VAQDPKEGKTV 121

Query: 200 LLDNNSKKRGKKKKD 214
           L +          K 
Sbjct: 122 LPEIPILNEMPFYKK 136


>gi|89902562|ref|YP_525033.1| ferredoxin-like protein [Rhodoferax ferrireducens T118]
 gi|89347299|gb|ABD71502.1| Ferredoxin-like [Rhodoferax ferrireducens T118]
          Length = 127

 Score = 43.6 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 86  QLSPVGTRA--HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
            L P  +    HV  C          C     ++  + C+ +   K       G +   +
Sbjct: 15  DLQPPKSYYERHVFFCLNERKNGEPCCAQYQAQQAFDHCKTQ--VKAAGLAGPGQVRVNK 72

Query: 138 VECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
             C   C   P++++  +   Y  L    ++EI+ +    GQ
Sbjct: 73  AGCMDRCAAGPVLVVYPEAVWYTYLDNADIDEIVASHLKNGQ 114


>gi|159482310|ref|XP_001699214.1| hypothetical protein CHLREDRAFT_185361 [Chlamydomonas reinhardtii]
 gi|158273061|gb|EDO98854.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 227

 Score = 43.6 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
           T+  +QVC    C  +G E +I+   + +    +   + G        C G C N P  +
Sbjct: 17  TKLELQVCIHRSCKRQGSENIIKFVND-LGISEVKATTTG--------CLGNCGNGPNAV 67

Query: 150 VMIGKDTYEDL-TPERLEEIIDAF 172
           ++  +     + TP  + +++ + 
Sbjct: 68  LLPAEQLLHHVATPADVAQVLQSL 91


>gi|293376712|ref|ZP_06622935.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325845175|ref|ZP_08168483.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1]
 gi|292644669|gb|EFF62756.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|325488771|gb|EGC91172.1| hypothetical protein HMPREF9402_0578 [Turicibacter sp. HGF1]
          Length = 122

 Score = 43.6 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
               G    V V   T  +  G   ++    N+++Q+ L       +   +  C G C  
Sbjct: 21  RDHEGKEVRVVVGMGTCGISAGARPVLNELVNEVNQRHLE-----HVVITQTGCIGMCTY 75

Query: 147 APMVMI----GKDTYEDLTPERLEE-IIDAFSTGQ 176
            PM  +    GK TY  +TPE++++ +++    G 
Sbjct: 76  EPMFDVFDAFGKTTYVHMTPEKVKKVVLEHLVNGN 110


>gi|114331325|ref|YP_747547.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91]
 gi|114308339|gb|ABI59582.1| putative ferredoxin 2fe-2s protein [Nitrosomonas eutropha C91]
          Length = 102

 Score = 43.6 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C     + + +  + +   K L  +  G +      C   C   
Sbjct: 6   HHVFFCVNQRGNCEGCCNDYHAQAMRDYAKAR--IKELKLSGKGKIRINNAGCLDRCNEG 63

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           P++++   +  Y  +  E ++EII++    GQ
Sbjct: 64  PVIVVYPEEVWYTYVDQEDIDEIIESHLKNGQ 95


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score = 43.6 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSD-GTLSWEEVECQGACVNAPMV 150
            V VC  T C+  G +K+ +        +    +    D   +   +  CQG C   P++
Sbjct: 26  RVLVCSGTGCIASGAQKIYDEMMKLCENLDWVSVEMQKDVPHVGVVKTGCQGLCELGPLM 85

Query: 151 MIG--KDTYEDLTPERLEEIIDA 171
            I      Y  +  E  +EI++ 
Sbjct: 86  KIEPYDYQYVHVQVEDCKEIVER 108


>gi|209521268|ref|ZP_03269988.1| putative ferredoxin [Burkholderia sp. H160]
 gi|209498310|gb|EDZ98445.1| putative ferredoxin [Burkholderia sp. H160]
          Length = 129

 Score = 43.6 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 23/108 (21%)

Query: 80  TFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDG 131
           +FY          + HV  C            C     + + E  + +   K L     G
Sbjct: 26  SFY----------KHHVFFCLNQREPGAERPSCANCNAQAMQEYAKKR--VKQLGLAGPG 73

Query: 132 TLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
            +   +  C   C   P +++  +   Y  +    ++EI+++  + G+
Sbjct: 74  QVRINKAGCLDRCELGPTLVVYPEAVWYTYVDESDIDEIVESHLAKGK 121


>gi|116784081|gb|ABK23206.1| unknown [Picea sitchensis]
          Length = 339

 Score = 43.6 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 35/128 (27%)

Query: 68  LDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHR 127
           + +    V  +                 ++VC +  C   G E L+     +I++  +  
Sbjct: 231 MGIPVQEVNSV-----------------IKVCMSGKCKKSGSEMLLGAFEERINKSGIG- 272

Query: 128 NSDGTLSWEEVEC--QGACVNAPMVMIG-------KDTYEDLTPERLEEIIDA---FSTG 175
                   E V C   G C NAP V +           +  +    ++ I+      +  
Sbjct: 273 -----FDVEAVGCKCMGKCRNAPSVRVQTEEDVGKGVMHMGVNIGDIDLILAQHFGLNLQ 327

Query: 176 QGDTIRPG 183
           Q  + + G
Sbjct: 328 QPPSPKEG 335


>gi|288870988|ref|ZP_06116012.2| Fe-hydrogenase, gamma subunit [Clostridium hathewayi DSM 13479]
 gi|288865172|gb|EFC97470.1| Fe-hydrogenase, gamma subunit [Clostridium hathewayi DSM 13479]
          Length = 102

 Score = 43.6 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 19  SEESAI-WVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVA 65
           S E+ +  + E+ S Y     + ++I +L  AQ   G++     + VA
Sbjct: 57  SPETLLGRIGELASEY--RGKEGSLISVLHMAQGIYGYLPLEVQKTVA 102


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score = 43.6 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRN-----SDGTLSWEEVECQGACVNAP 148
           + +C  T C+  G   + E     + +K +    +      D T+  ++  C G C   P
Sbjct: 26  ILICAGTGCVAGGSLDIYEEFIKLMKEKEINCEVSLEKEPHDETVGIKKSGCHGFCEMGP 85

Query: 149 MVMIG--KDTYEDLTPERLEEIIDA 171
           +V I      Y  + PE   EI++ 
Sbjct: 86  LVRIEPFGYLYIKVKPEDCAEILEK 110


>gi|17548848|ref|NP_522188.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17431097|emb|CAD17778.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 109

 Score = 43.6 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E   N + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFNVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTGQGDT 179
                 Y +L    +  I+D    G    
Sbjct: 62  YPDGVWYRNLDAASVRRIVDEHLAGGAPV 90


>gi|300693525|ref|YP_003749498.1| ferredoxin protein [Ralstonia solanacearum PSI07]
 gi|299075562|emb|CBJ34855.1| putative ferredoxin protein [Ralstonia solanacearum PSI07]
          Length = 109

 Score = 43.6 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E     + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y +L    +  I+D    G
Sbjct: 62  YPDGVWYRNLDTASVRRIVDEHLAG 86


>gi|262196840|ref|YP_003268049.1| ferredoxin [Haliangium ochraceum DSM 14365]
 gi|262080187|gb|ACY16156.1| putative ferredoxin [Haliangium ochraceum DSM 14365]
          Length = 106

 Score = 43.6 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 93  RAHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           R H+ VC           C  RG + L +     + + P        ++     C G C 
Sbjct: 4   RHHIFVCTNERPAGGKPACGGRGGDALADEFERAVARHP---TLCRAVAVTRCGCLGPCF 60

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           + P ++I      Y  +    + +I++    G
Sbjct: 61  DGPNLVIYPEGIWYAGVESADVADIVEQHLLG 92


>gi|126658029|ref|ZP_01729181.1| hypothetical protein CY0110_05422 [Cyanothece sp. CCY0110]
 gi|126620667|gb|EAZ91384.1| hypothetical protein CY0110_05422 [Cyanothece sp. CCY0110]
          Length = 185

 Score = 43.6 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
            + VC  + C  RG E + +    K+ Q+ L   SD  +  +   C   C   P  ++M 
Sbjct: 107 KILVCQKSSCWKRGGESVCQQLEQKLEQQGL---SD-RVKVKLTGCLKQCKKGPNVVIMP 162

Query: 153 GKDTYEDLTPERLEEIIDA 171
            K  Y  + P  +E++++ 
Sbjct: 163 HKARYCQVQPREVEQLLNK 181


>gi|259418140|ref|ZP_05742059.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259347046|gb|EEW58860.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 239

 Score = 43.6 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           P   R H+ VC    C ++    L +  + +   +    +    ++     C   C   P
Sbjct: 136 PPAHRHHLLVCTGPRCHVKDAPNLADALKVE--IRRAGLSDSCLVT--TTGCVFPCNAGP 191

Query: 149 MVM 151
           +++
Sbjct: 192 VIV 194


>gi|99082773|ref|YP_614927.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040]
 gi|99039053|gb|ABF65665.1| hypothetical protein TM1040_2933 [Ruegeria sp. TM1040]
          Length = 239

 Score = 43.2 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 36/131 (27%)

Query: 50  QEQEGWVSRAAIEVVANILDMAYIRVL-------------EIATFYTQFQLS-------- 88
           Q  E W+  AA    A    +    V               +A+   +  L         
Sbjct: 71  QSLENWLPGAAGAWCAQQNGVPP-EVFFASSPEHDDDVIRAVAS--AEVSLQRVVDRPRG 127

Query: 89  --------PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
                   P   + H+ VC    C L+    L +  +++   +         ++     C
Sbjct: 128 EIGKGWDLPPPHQHHLLVCTGPRCHLKDAPNLADHLKSE--IRRAGLGDSCLVT--TTGC 183

Query: 141 QGACVNAPMVM 151
              C   P+++
Sbjct: 184 VFPCNAGPVIV 194


>gi|46562236|ref|YP_009050.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447773|gb|AAS94439.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris str. Hildenborough]
 gi|311235392|gb|ADP88245.1| ferredoxin, 2fe-2s [Desulfovibrio vulgaris RCH1]
          Length = 100

 Score = 43.2 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 16/96 (16%)

Query: 94  AHVQVCGTT-------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ VC +         C+ +G   L+     +I  + L              C   C  
Sbjct: 6   HHILVCMSFRGLEPKGTCIRKGAPDLVAHLDAEIAARGL-----NAF-VSTTGCLQFCDK 59

Query: 147 APMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDT 179
            P++++   G         + ++ I+DA   G+  T
Sbjct: 60  GPVLVVYPQGHWYGGGDDEDAVDAILDALEAGEPCT 95


>gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
 gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
          Length = 551

 Score = 43.2 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--LSWEEVECQGACVNAPMVMI 152
            ++ C    C+      + E    +I         D    +    V C G C   P+V +
Sbjct: 21  CIRCCTVGGCLSANALAVKEQIEVEIA------TQDLNPPMHVRGVGCMGLCSRGPLVRL 74

Query: 153 G--KDTYEDLTPERLEEII 169
                 Y+ +TPE   E++
Sbjct: 75  DPAGILYDQVTPEDAPELV 93


>gi|302816843|ref|XP_002990099.1| hypothetical protein SELMODRAFT_447911 [Selaginella moellendorffii]
 gi|300142112|gb|EFJ08816.1| hypothetical protein SELMODRAFT_447911 [Selaginella moellendorffii]
          Length = 236

 Score = 43.2 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            R  V+VC  T C   G  + ++  +N          +   +S E   C G C + P
Sbjct: 25  KRREVRVCTHTTCRKSGSLQTLQALQNL---------APAAVSVESCGCLGRCGSGP 72


>gi|114776526|ref|ZP_01451571.1| hypothetical protein SPV1_02362 [Mariprofundus ferrooxydans PV-1]
 gi|114553356|gb|EAU55754.1| hypothetical protein SPV1_02362 [Mariprofundus ferrooxydans PV-1]
          Length = 88

 Score = 43.2 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC    C   G   L       +  K               +C+  C +AP+V++  
Sbjct: 21  TIEVCHGPQCSDSGGRALAAELEE-MGLK-----------VCAGDCRSQCAHAPLVLVDN 68

Query: 155 DTYEDLTPERLEEIIDAFST 174
                 T +++ E +     
Sbjct: 69  YMISKATTDKVVERLKTLQA 88


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score = 43.2 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQGACVN 146
            + VC  T C+  G  K+ E  +  I +K L          + +G +      C G C  
Sbjct: 26  RILVCAGTGCVANGSLKIYEKLKKMISEKGLLAEVELVKEVSHEG-IGVNISGCHGFCQM 84

Query: 147 APMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIR 181
            P+V        Y  +  E +EEI++    G G   R
Sbjct: 85  GPLVRFEPSGLLYVKVKEEDVEEIVNTTVIGNGVVER 121


>gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 656

 Score = 43.2 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-------CQGAC 144
            ++   VC  T C+L G  ++ +     + ++    + +      E +       C G C
Sbjct: 25  QKSRFLVCAGTGCVLGGALEVYQEFVRLLKERGCPTSVELLFEGRETDAGAAYSGCHGFC 84

Query: 145 VNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLD 202
              P+V        Y  +T   + EII   +    +T+     ++R+      G  SL +
Sbjct: 85  QLGPLVRFEPKGIFYTQVTAADVPEIIT--TALDKNTV-----VERLLYQNPDGSKSLRE 137

Query: 203 NN 204
            +
Sbjct: 138 ED 139


>gi|21674360|ref|NP_662425.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
 gi|21647538|gb|AAM72767.1| ferredoxin, 2Fe-2S [Chlorobium tepidum TLS]
          Length = 102

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 22/100 (22%)

Query: 92  TRAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140
            + H+ VC +          C  +    LI    +++        +D  +S        C
Sbjct: 4   PKHHIFVCASFRAQGAPQGMCHKKESLNLIPYLESEL--------ADRGMSDVAVSATAC 55

Query: 141 QGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQG 177
              C   P++++        E  + ++++EI+DA   GQ 
Sbjct: 56  LNLCEKGPVLVVYPENFWYGEIDSEDKVDEILDALEEGQA 95


>gi|115378568|ref|ZP_01465723.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1]
 gi|310820735|ref|YP_003953093.1| NADH dehydrogenase I chain f [Stigmatella aurantiaca DW4/3-1]
 gi|115364440|gb|EAU63520.1| NADH dehydrogenase i chain f [Stigmatella aurantiaca DW4/3-1]
 gi|309393807|gb|ADO71266.1| NADH dehydrogenase I chain F [Stigmatella aurantiaca DW4/3-1]
          Length = 118

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 26/102 (25%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + VC    C   G   +    + ++ Q+ L              C G C   P V+
Sbjct: 2   KRYRLSVCKGMDCKANGSNAVFAAAQEELTQRGLAP----RCEAYRGGCYGFCHMGPNVV 57

Query: 152 IGKD----------------------TYEDLTPERLEEIIDA 171
           I +D                       Y  + PER+  +I  
Sbjct: 58  IREDTGRKKDPLSPEDYQLMGWPGEVYYSRMNPERMRRVIAE 99


>gi|171060902|ref|YP_001793251.1| ferredoxin-like protein [Leptothrix cholodnii SP-6]
 gi|170778347|gb|ACB36486.1| ferredoxin-like protein [Leptothrix cholodnii SP-6]
          Length = 131

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+  C        + C     +   + C+ +   K       G +   +  C   C   P
Sbjct: 30  HIFFCLNQRDNGQSSCADFPAQAAFDHCKKQ--VKAAGLAGPGQVRVNKAGCLDRCAGGP 87

Query: 149 MVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
           + ++  +   Y  +    ++EI+++    GQ
Sbjct: 88  VAVVYPEAVWYSFVDNSDIDEIVESHLKNGQ 118


>gi|15605694|ref|NP_213071.1| ferredoxin [Aquifex aeolicus VF5]
 gi|2982853|gb|AAC06474.1| ferredoxin [Aquifex aeolicus VF5]
          Length = 65

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 135 WEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                C  AC+  P+V++      Y  + PE ++EI++    G     R
Sbjct: 5   ITPTGCMNACMMGPVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEPVER 53


>gi|310641711|ref|YP_003946469.1| NADH-ubiquinone oxidoreductase 51 kda subunit [Paenibacillus
           polymyxa SC2]
 gi|309246661|gb|ADO56228.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paenibacillus
           polymyxa SC2]
          Length = 87

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEE 167
           +++ +  R +  +  +H             C G C +A +V++    D Y  +TP    E
Sbjct: 10  QEIRDEIRKQHAEAYIHTT--------RTRCNGRCHDAAVVIVYPQGDWYGQMTPASGTE 61

Query: 168 IIDAFSTGQGDTIR 181
           ++     G+     
Sbjct: 62  LVQKLVAGEKLEPH 75


>gi|222099661|ref|YP_002534229.1| NADP-reducing hydrogenase, subunit B [Thermotoga neapolitana DSM
           4359]
 gi|221572051|gb|ACM22863.1| NADP-reducing hydrogenase, subunit B [Thermotoga neapolitana DSM
           4359]
          Length = 126

 Score = 43.2 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G R  + V   T  +  G ++ ++     +++  +       ++  +  C G C   P 
Sbjct: 27  TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEHGV-----NDVAVVQSGCMGLCEVEPT 81

Query: 150 VMIGKD-----TYEDLTPERLEEIID 170
           V +  +      Y  +TPE    I+ 
Sbjct: 82  VEVRLEGQEPVVYGRVTPENARRIVK 107


>gi|312878986|ref|ZP_07738786.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260]
 gi|310782277|gb|EFQ22675.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260]
          Length = 123

 Score = 43.2 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP---M 149
           +  + +   T  +  G   ++E    +++++ L       +S E   C G C   P   +
Sbjct: 28  KTRIIIGLGTCGIAAGARAVMEAVMEELNKRGLK-----DVSVEGTGCIGMCQQEPLLDV 82

Query: 150 VMIGK--DTYEDLTPERLEEIIDA 171
           +  G+   TY  +T + +  I+  
Sbjct: 83  IRPGEPRITYGRVTAQDVPRIVAD 106


>gi|288574746|ref|ZP_06393103.1| NADH dehydrogenase I, F subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570487|gb|EFC92044.1| NADH dehydrogenase I, F subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 124

 Score = 43.2 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             V V   T  +  G  ++++    +I ++ L       +S +   C G C   P++ + 
Sbjct: 29  VKVIVGMGTCGIAAGAREVMDAVLKEIEKRGLK-----DVSVQTTGCIGMCQEEPLLDVI 83

Query: 153 ----GKDTYEDLTPERLEEIIDA 171
               G+ TY  +TPE +  I+  
Sbjct: 84  YPNKGRITYGRVTPEDVPRIVSE 106


>gi|217977899|ref|YP_002362046.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocella silvestris BL2]
 gi|217503275|gb|ACK50684.1| ferredoxin, 2Fe-2S (AaFd4) [Methylocella silvestris BL2]
          Length = 114

 Score = 43.2 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 61  IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120
           +  VA  LD+  +    +      F   P G            CM  G + L E  + K 
Sbjct: 1   MSSVAE-LDLPVVFKYHVI---ACFTKRPPGHPRG-------SCMESGAQPLWEHLQKK- 48

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGD 178
             +         +      C   C   P++++      Y   T + ++EI+D    G G+
Sbjct: 49  -VEAQRLTD---VCVTASGCLSFCRAGPLMVVYPEGVWYHPETVDDIDEIVDRHF-GAGE 103

Query: 179 TIR 181
            + 
Sbjct: 104 PVE 106


>gi|239616589|ref|YP_002939911.1| NADP-reducing hydrogenase, subunit B [Kosmotoga olearia TBF 19.5.1]
 gi|239505420|gb|ACR78907.1| NADP-reducing hydrogenase, subunit B [Kosmotoga olearia TBF 19.5.1]
          Length = 125

 Score = 43.2 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  + V   T  +  G ++ ++     +++K +       ++  +  C G C   P + 
Sbjct: 28  KRGKIIVAMGTCGIAAGAKETLKAIVETLNEKGID-----DIAVVQSGCFGLCDVEPTIE 82

Query: 152 I---GKDT--YEDLTPERLEEIIDA 171
           +     +   Y  +TP + + II+ 
Sbjct: 83  VHMENSEPIIYGHVTPAQAKRIIEQ 107


>gi|110596761|ref|ZP_01385051.1| ferredoxin, 2Fe-2S [Chlorobium ferrooxidans DSM 13031]
 gi|110341448|gb|EAT59908.1| ferredoxin, 2Fe-2S [Chlorobium ferrooxidans DSM 13031]
          Length = 102

 Score = 43.2 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 22/99 (22%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLS---WEEVEC 140
            + H+ VC       TP   C  +    LI    +++        +D  +S        C
Sbjct: 4   PKHHILVCASFRAQGTPQGICHKKESLSLIPYIESEL--------ADRGMSDVAVSATGC 55

Query: 141 QGACVNAPMVMI--GKDTYEDLTPE-RLEEIIDAFSTGQ 176
              C   P++++      Y ++  E ++++I+DA   G+
Sbjct: 56  LNLCEKGPVLVVYPENFWYGEIDSEGKIDDILDALEEGE 94


>gi|22299462|ref|NP_682709.1| hypothetical protein tlr1919 [Thermosynechococcus elongatus BP-1]
 gi|22295645|dbj|BAC09471.1| tlr1919 [Thermosynechococcus elongatus BP-1]
          Length = 172

 Score = 43.2 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 14/78 (17%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
            V +C  + C  RG ++L +     ++             + +   C G C   P V+I 
Sbjct: 101 RVLICQKSSCCRRGAKELWQELEAQQLPI-----------TLKATGCMGECKRGPAVVIL 149

Query: 153 -GKDTYEDLTPERLEEII 169
             K        +++ E++
Sbjct: 150 PQKKRLTRANAQQIRELV 167


>gi|310826465|ref|YP_003958822.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612]
 gi|308738199|gb|ADO35859.1| hypothetical protein ELI_0845 [Eubacterium limosum KIST612]
          Length = 132

 Score = 43.2 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
             L        V V   T  +  G   ++     ++  + L       ++  +  C G C
Sbjct: 19  INLRKGKDGYRVVVGMATCGIAAGARPVMVKLMEEVEAQGLK-----DVTVAQTGCIGVC 73

Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P+V +      K TY  +TPE+++ I+D     G+
Sbjct: 74  RLEPIVEVYNPEGEKVTYVKMTPEKVQRIVDEHLKNGK 111


>gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus]
          Length = 496

 Score = 43.2 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 38  CQSAVIPLLMRAQEQEGW--VSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95
            +  ++ +L+  ++ +G   +S A +  VA  L +      E+AT +     +     A 
Sbjct: 27  QRGRLLEILLEVRDAKGGVGISPAGLAAVAEHLRLFPSEAYEVATAFPAVNYAAATPYAT 86

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNK 119
            + CG   C L        VCRN+
Sbjct: 87  -EGCGDLVCGLLQGAPGAGVCRNR 109


>gi|260219751|emb|CBA26595.1| Ferredoxin, 2Fe-2S [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 116

 Score = 43.2 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+  C          C     ++  + C+     K    +  G +   +  C   C   P
Sbjct: 15  HIFFCLNERKNGEDCCAHHNAQEGFDRCKQL--VKEAGLSGPGQVRVNKAGCLDRCAAGP 72

Query: 149 MVMIGKDT--YEDLTPERLEEIIDA-FSTGQ 176
           + ++  +   Y  +  + +EEI+++    G+
Sbjct: 73  VAVVYPEAVWYTFVDAQDIEEIVESHLKNGK 103


>gi|119713521|gb|ABL97574.1| putative ferredoxin 2fe-2s protein [uncultured marine bacterium
           EB0_35D03]
          Length = 74

 Score = 43.2 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           G L   E  C G C N P++++      Y+ +  E ++EI+++   +G+
Sbjct: 18  GGLGVSESRCLGRCENGPVLVVYPDNVWYQYIDEEDIDEILESHLESGK 66


>gi|312144190|ref|YP_003995636.1| ferredoxin-like protein [Halanaerobium sp. 'sapolanicus']
 gi|311904841|gb|ADQ15282.1| ferredoxin-like protein [Halanaerobium sp. 'sapolanicus']
          Length = 121

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GTR  + V   T  +  G  ++++    ++         D  +   +  C G C   P++
Sbjct: 24  GTRPEIIVGMGTCGIAAGAREILKAILEEVE------TRDIDVRVTQTGCIGMCEKEPLI 77

Query: 151 ---MIGKD--TYEDLTPERLEEIIDA 171
              M GK+  TY +L+   ++EII  
Sbjct: 78  DVRMPGKERITYGNLSKTDVKEIISK 103


>gi|209966077|ref|YP_002298992.1| ferredoxin, 2Fe-2S [Rhodospirillum centenum SW]
 gi|209959543|gb|ACJ00180.1| ferredoxin, 2Fe-2S [Rhodospirillum centenum SW]
          Length = 132

 Score = 43.2 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 21/91 (23%)

Query: 93  RAHVQVCGTT--------PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQ 141
           RAHV  C            C  RG E L +  + +   +  +         +      C 
Sbjct: 14  RAHVFCCTNERPEGHPRGSCKRRGAEPLRDYMKKRATALGLRG--------IRVNAAGCL 65

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIID 170
             C   P++++      Y   +   ++EI++
Sbjct: 66  DRCELGPVMVVYPEGVWYGFSSEADIDEILE 96


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score = 42.8 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + +C  T  +  G EK+ +  R     +      D  +           V   +V  
Sbjct: 2   KNRILICTGTSGISAGAEKVAKFFRE--GIQHHKLEDDYDVVVTGDRGLFRDVLVDIVPP 59

Query: 153 GKD--TYEDLTPERLEEIIDAFSTGQGDTIR 181
             +  TYE +TPE +  I++     +G+ ++
Sbjct: 60  DGERITYEFVTPEDVSTIVEEHLV-KGEPVK 89


>gi|114321392|ref|YP_743075.1| ferredoxin, 2Fe-2S [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227786|gb|ABI57585.1| ferredoxin, 2Fe-2S [Alkalilimnicola ehrlichii MLHE-1]
          Length = 103

 Score = 42.8 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 93  RAHVQVCGT-------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           R H+  C           C  RG  +  +  + +   K L     G L      C   C 
Sbjct: 5   RRHMFFCTNRREGDERPCCCNRGGAEAKDYVKAR--AKALGLTGPGGLRVNAAGCLDRCE 62

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P+ ++      Y  +  E L+E++D 
Sbjct: 63  EGPVAVVYPEGVWYTWVDEEDLDELVDE 90


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score = 42.8 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVE-----------CQGA 143
            + +C  T C+  G  ++ +     +         D  L  ++ E           CQG 
Sbjct: 28  RIIICAGTGCVANGSLEVRDALAEALK----EAGVDVALELKKEEEHTGTYISKSGCQGF 83

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           C   P++ I  G   Y  +    + EI++     G+
Sbjct: 84  CQMGPLLHIEPGDILYTKVKVSDVPEIVERTLKKGE 119


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score = 42.8 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL-HRNSDGTL---SWEEVECQGACVNAPMV 150
            + +C  T C+  G + + +  +  +          +G +     ++  C G C   P++
Sbjct: 26  RILICAGTGCISGGSQFIYDKMKELVGDNENVEVKFEGHVPHPEVKKSGCHGFCEMGPLM 85

Query: 151 MIG--KDTYEDLTPERLEEI 168
            I      Y  + PE  EEI
Sbjct: 86  RIEPLNILYVKVQPEDCEEI 105


>gi|332296988|ref|YP_004438910.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Treponema brennaborense DSM 12168]
 gi|332180091|gb|AEE15779.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Treponema brennaborense DSM 12168]
          Length = 131

 Score = 42.8 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + V   T  +  G +  +E    ++  K +     G++   +  C G C N P V
Sbjct: 27  GKTFQIIVGMGTCGIAAGAKPTLEAFIKELDAKGMA----GSVIIRQTGCMGMCANEPTV 82

Query: 151 MI-----GKDTYEDLTPERLEEII 169
            +         Y ++TPE  ++I+
Sbjct: 83  EVIAPDMPAVIYGNVTPEVAKQIV 106


>gi|144897802|emb|CAM74666.1| Ferredoxin, 2Fe-2S [Magnetospirillum gryphiswaldense MSR-1]
          Length = 107

 Score = 42.8 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 23/100 (23%)

Query: 93  RAHVQVCGTT--------PCMLRGC-----EKLIEVCRNKIHQKPLHRNSDGTLSWEEVE 139
           + HV VC T+         C  +G      ++++   +  +  +         +S  +  
Sbjct: 4   KYHVFVCTTSRPAGHPRGCCTSKGGGTAMFDQMMARFQKGMLWEKG-------VSLAQAS 56

Query: 140 CQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           C G C N P++++      Y+ +     +EI+D+ F  GQ
Sbjct: 57  CLGFCGNGPLMVVYPEGIWYQPVEAADYDEIVDSHFKKGQ 96


>gi|327479970|gb|AEA83280.1| ferredoxin, 2Fe-2S [Pseudomonas stutzeri DSM 4166]
          Length = 106

 Score = 42.8 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C            C  +G E L +     +  +       G ++     C G C 
Sbjct: 6   YHIFLCLQRRAEGHPRGSCAAKGGEALFDAFSQAL-IRRNLI---GRIALTGTGCLGPCQ 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGP 184
               V+I  G   Y  + P   + I+     G+  T +  P
Sbjct: 62  AGANVLIYPGALMYSWVEPADADGILTHLLEGEPFTDKLTP 102


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score = 42.8 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKP------LHRNSDGTLSWEEVECQGACVNAP 148
            V VC  T C+  G  +  E  R  + +K       L +  +  +   +  C G C   P
Sbjct: 26  RVSVCAGTGCLAGGSLEFYERLRAIVAEKGLLVDVRLEKEPEHGIGVHKSGCHGFCEMGP 85

Query: 149 MVMIG--KDTYEDLTPERLEEIID 170
           +V I      Y  + PE  EEI +
Sbjct: 86  IVRIEPAGYLYLRVKPEDAEEIAE 109


>gi|308270213|emb|CBX26825.1| hypothetical protein N47_A08540 [uncultured Desulfobacterium sp.]
          Length = 100

 Score = 42.8 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNK-------IHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ VC    C  RG E   +  R +       + ++ + R  +  +S     C   C +
Sbjct: 6   YHIFVC----CSFRGIEAKGKCLRKESPNLIPYLQEELVDRGLNAMVS--SSGCLNRCDD 59

Query: 147 APMVMI--GKDTYEDLTPE-RLEEIIDAFSTG 175
            P ++I      Y ++  E  ++EI+DA   G
Sbjct: 60  GPAMVIYPQGIWYGNVNGEAEVDEILDALEEG 91


>gi|207724362|ref|YP_002254759.1| ferredoxin protein [Ralstonia solanacearum MolK2]
 gi|206589580|emb|CAQ36541.1| ferredoxin protein [Ralstonia solanacearum MolK2]
          Length = 109

 Score = 42.8 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
             HV +C    C   G E   E     + Q          +      C   C   P++++
Sbjct: 5   HKHVLMCTGPRCTQDGAEA--EALFKVLGQTIDAC-EGLRVKRTRTHCFAVCKQGPLMVV 61

Query: 153 --GKDTYEDLTPERLEEIIDAFSTG 175
                 Y +L    +  I+D    G
Sbjct: 62  YPDGVWYRNLDATSVRRIVDEHLAG 86


>gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 539

 Score = 42.8 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
             V VC +T C   G E+L +  R +   +            +   +  C G C    + 
Sbjct: 5   TQVLVCTSTACRSSGGEQLFKALRREIKNLGLD---------VRVVKTGCYGFCGLGSVA 55

Query: 151 MI 152
           ++
Sbjct: 56  VV 57


>gi|186474979|ref|YP_001856449.1| putative ferredoxin [Burkholderia phymatum STM815]
 gi|184191438|gb|ACC69403.1| putative ferredoxin [Burkholderia phymatum STM815]
          Length = 107

 Score = 42.8 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + HV  C            C     +++ E  + +   K L     G +   +  C   C
Sbjct: 6   KHHVFFCLNQREPGASRPSCANCNAQEMQEYAKKR--VKQLGLAGPGQVRINKAGCLDRC 63

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
              P +++      Y  +    ++EI+++  + G+
Sbjct: 64  EEGPTIVVYPEGVWYTYIDKTDIDEIVESHLANGK 98


>gi|194335513|ref|YP_002017307.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307990|gb|ACF42690.1| ferredoxin, 2Fe-2S [Pelodictyon phaeoclathratiforme BU-1]
          Length = 100

 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           AHV VC       RG EK           ++K+ Q    +   G +      C G C N 
Sbjct: 11  AHVFVCTND----RGGEKKSCADNNSQLTKDKLKQAVDEKGWKGKVRISTSGCMGLCGNG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
             VMI   K  +  + P+ ++EI+ A
Sbjct: 67  SHVMIYPQKVWFSGVLPDDVDEIVSA 92


>gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619]
 gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619]
          Length = 519

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 21/91 (23%)

Query: 99  CGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEE-VECQ---GACVNAPM 149
           C +    + G ++++E  + +     +       +S G    E  VEC+   G     P+
Sbjct: 8   CDSVARAV-GADQVVEALQREAERRQLALDIQRTSSRGLYWLEPLVECERAEGRQGFGPV 66

Query: 150 VMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
                      TPE +  ++DA +   G   
Sbjct: 67  -----------TPEDVPALLDALAAEPGSHP 86


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score = 42.4 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN------SDGTLSWEEVECQGACV 145
               + +CG T C+  G   +    +  I +  L  +          +  ++  C G C 
Sbjct: 23  QYKQILICGGTGCVAGGSLNIYARLKELIEESGLDVSVSLEDEPHEAVGIKKSGCHGFCE 82

Query: 146 NAPMVMIG--KDTYEDLTPERLEEIIDA 171
             P++ I      Y  +  E  EEI++ 
Sbjct: 83  MGPLLRIEPAGVLYIKVKVEDCEEIVEQ 110


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score = 42.4 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--------HRNSDGTLSWEEVECQGA 143
            +  + VC  T C+  G  K+    +  I +K L          + +G ++     C G 
Sbjct: 23  EKMRILVCAGTGCVANGSLKVYAALKRMIEEKGLLTSVELVEEVSHEG-IAVNISGCHGF 81

Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIID 170
           C   P+V        Y  +  E  EEI++
Sbjct: 82  CQMGPLVRFEPSGLLYCKVKEEDAEEIVN 110


>gi|154495353|ref|ZP_02034358.1| hypothetical protein PARMER_04410 [Parabacteroides merdae ATCC
           43184]
 gi|154085277|gb|EDN84322.1| hypothetical protein PARMER_04410 [Parabacteroides merdae ATCC
           43184]
          Length = 132

 Score = 42.4 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             +++   T  +  G ++++      + ++      D  ++  +  C G C   P V + 
Sbjct: 34  VQIRISMATCGIAAGAKEIMNYFIEALDREK----VDALVT--QTGCMGYCYAEPTVEVT 87

Query: 153 --GKD--TYEDLTPERLEEIIDAF-STGQ 176
             GK+   +  +   +++EIID +   G+
Sbjct: 88  LPGKEPLVFGHVKKAKVDEIIDRYIRNGE 116


>gi|168023109|ref|XP_001764081.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684820|gb|EDQ71220.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score = 42.4 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC    C   G ++++   ++     P        +S    +C G C +AP V +  
Sbjct: 519 KIEVCTVGKCRKGGSQQILASLKS---IVP----ESSNISVTSCKCMGKCKSAPNVRVKN 571

Query: 155 -----DTYEDLTPERLEEIID 170
                  +  ++ +  + + D
Sbjct: 572 SERQSHLHSHVSEDDADTLFD 592


>gi|166367039|ref|YP_001659312.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843]
 gi|166089412|dbj|BAG04120.1| 2Fe-2S ferredoxin [Microcystis aeruginosa NIES-843]
          Length = 99

 Score = 42.4 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V VC  + C+++G  +L+   +     +         +      CQG C  +P V 
Sbjct: 5   QKRFVMVCQHSSCLVQGASELLLAWQTAALPED--------VIVMTSGCQGQCSTSPTVR 56

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           I   +  Y  + PE + +I++     GQ
Sbjct: 57  IIPEETWYCRVKPEDVNQIVEEHLKNGQ 84


>gi|225437783|ref|XP_002273957.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 341

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 21/108 (19%)

Query: 86  QLSPVGT-RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
             + VG  +  ++VC    C   G   L+E  + ++  K               +C G C
Sbjct: 237 NTNRVGESKTRIEVCMGGKCRKLGAAMLLEEFQRQVGTKAG---------VVPCKCMGRC 287

Query: 145 VNAPMV----MIGKDTYED-------LTPERLEEIIDAFSTGQGDTIR 181
            + P V     +G  +          +  + +  I+   S G+ +   
Sbjct: 288 RDGPNVKGVEEVGWGSCSKSSSHWCGVGLDEISVIVADLSDGRSNKPH 335


>gi|78187393|ref|YP_375436.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273]
 gi|78167295|gb|ABB24393.1| ferredoxin, 2Fe-2S [Chlorobium luteolum DSM 273]
          Length = 102

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC        P   C  +    LI    +++            ++     C   
Sbjct: 4   PKHHIFVCASFRAQGAPQGICRKKESLSLIPYFESELA-DRGMT----DVAVSATACLNL 58

Query: 144 CVNAPMVMI--GKDTYEDLT-PERLEEIIDAFSTGQG 177
           C   P+V+I      Y ++   ++++EI+DA   G+ 
Sbjct: 59  CEKGPIVVIYPENFWYGEVDSEDKVDEILDALEEGEA 95


>gi|251771319|gb|EES51900.1| probable ferredoxin [Leptospirillum ferrodiazotrophum]
          Length = 110

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 93  RAHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           RAH+ +C            C  RG E L+E+ + +   K                C  AC
Sbjct: 5   RAHLFLCTNERPADHPRGSCRARGAEPLLEIIKEEAR-KAGVPEP---FRANRSGCLDAC 60

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDRISS 191
            + P++ +      Y     E +  I+ +    G+  +    P   R  +
Sbjct: 61  ESGPVLAVYPDGVFYTVRNREEVARIVSEHLVGGKVVSDLAIPDPPRRGA 110


>gi|159030120|emb|CAO91012.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 99

 Score = 42.4 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V VC  + C+++G  +L+   +     +         +      CQG C  +P V 
Sbjct: 5   QKRFVMVCQHSSCLVQGASELLLAWQTAALPED--------VIVMTSGCQGQCSTSPTVR 56

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQ 176
           I   +  Y  + PE + +I++     GQ
Sbjct: 57  IIPEETWYCRVKPEDVNQIVEEHLKNGQ 84


>gi|152993856|ref|YP_001359577.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1]
 gi|151425717|dbj|BAF73220.1| 2Fe-2S ferredoxin [Sulfurovum sp. NBC37-1]
          Length = 124

 Score = 42.4 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 109 CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLE 166
            ++L +     +  K +     GT+   +  C   C   P++++  G   Y  LT E+++
Sbjct: 35  SQQLFQHLAQSLMMKGII----GTVQPIQTGCLNRCQQGPVMLVEPGHTMYVGLTKEKID 90

Query: 167 EIIDAFSTG 175
            IID    G
Sbjct: 91  RIIDEHIIG 99


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score = 42.4 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156
            C +  G +K+ +  +  +    +     G        C G C N P+V +     G+  
Sbjct: 25  SCGIAAGAQKVYDTFKTALEGLAVELTFSG--------CMGMCYNEPLVEVRSLSGGRYI 76

Query: 157 YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISS 191
           Y  + PE++  I+     G    +      DRI +
Sbjct: 77  YGKVQPEQVARIVQEHIQGGTPIMDWVVYSDRIKT 111


>gi|53803626|ref|YP_114709.1| hypothetical protein MCA2292 [Methylococcus capsulatus str. Bath]
 gi|53757387|gb|AAU91678.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 107

 Score = 42.4 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 93  RAHVQVCGTTPCMLRG-CEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148
           R H+ VC    C   G  + L +    K                +    V C   C + P
Sbjct: 5   RRHLLVCTGPRCTTNGESQALFDSLGEKFRAAGIDQGEL----RVKRTRVSCFATCKSGP 60

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           +V I      Y D+T   L+ II     G
Sbjct: 61  LVCIQPDGVWYYDVTEANLDRIIREHLVG 89


>gi|312880509|ref|ZP_07740309.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260]
 gi|310783800|gb|EFQ24198.1| ferredoxin-like protein [Aminomonas paucivorans DSM 12260]
          Length = 123

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--- 148
            +  V V   T  +  G   +++    ++ ++ +H      ++ E   C G C N P   
Sbjct: 27  DKCRVIVGLGTCGIAAGGRGVMQAVLEELQRRNIH-----DVAVETTGCAGMCQNEPLLD 81

Query: 149 MVMIGKD--TYEDLTPERLEEIIDAFSTG 175
           +V  G++  TY  +TP  +  II+    G
Sbjct: 82  VVRPGEERVTYGRVTPGDVPRIIEEHLLG 110


>gi|15612930|ref|NP_241233.1| hypothetical protein BH0367 [Bacillus halodurans C-125]
 gi|10172980|dbj|BAB04086.1| BH0367 [Bacillus halodurans C-125]
          Length = 129

 Score = 42.4 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKP-LHRNSDGTLSWEEVECQGACVNA 147
           T+ HV +C  + C   G E+L    R +I      P +H       +     C G C + 
Sbjct: 9   TKHHVLICNGSSCNKAGAEQLTRSIRAEIMAKGLDPIIHTTR----TL----CNGRCQDK 60

Query: 148 PMVMI---GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             V+I       Y++++ E     +D+  +G+    +
Sbjct: 61  -CVLITYPSGHWYKEMSSEDAPRFVDSLLSGRRVEEK 96


>gi|158421927|ref|YP_001523219.1| ferredoxin [Azorhizobium caulinodans ORS 571]
 gi|158328816|dbj|BAF86301.1| ferredoxin [Azorhizobium caulinodans ORS 571]
          Length = 117

 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C   G + L E    +I            +      C G C   P++++      Y+  
Sbjct: 35  SCGAAGAQPLWERLGKQI-----EATGQRDIVMTATGCMGFCQAGPIMVVYPEGVWYQPR 89

Query: 161 TPERLEEII 169
           TPE ++EI+
Sbjct: 90  TPEDVDEIV 98


>gi|294338751|emb|CAZ87083.1| putative ferredoxin / thioredoxin [Thiomonas sp. 3As]
          Length = 115

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + H+  C            C   G E   E C++    K L     G +      C   C
Sbjct: 5   KHHIFFCLNQRDASATRPCCAASGAEAAFEHCKSA--VKTLGLAGAGKVRVNRAGCLDRC 62

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P+ ++      Y  +    +++I+ +
Sbjct: 63  EEGPVCVVYPEGVWYTYVDQSDIDDIVQS 91


>gi|37522134|ref|NP_925511.1| hypothetical protein gll2565 [Gloeobacter violaceus PCC 7421]
 gi|35213134|dbj|BAC90506.1| gll2565 [Gloeobacter violaceus PCC 7421]
          Length = 199

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGAC 144
           SP   +  V VC ++ C  RG  KLI        +         +D  +      C   C
Sbjct: 111 SPTLPKTRVLVCESSDCCKRGARKLIRNLEEAVERYGL------AD-RVQIRTTGCMKHC 163

Query: 145 VNAPMVMI--GKDTYEDLTPERLE 166
              P +MI   K  +  + P + +
Sbjct: 164 KQGPNLMITPAKTRHTYVDPAQAQ 187


>gi|296134795|ref|YP_003642037.1| Sucraseferredoxin family protein [Thiomonas intermedia K12]
 gi|295794917|gb|ADG29707.1| Sucraseferredoxin family protein [Thiomonas intermedia K12]
          Length = 115

 Score = 42.0 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 93  RAHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           + H+  C            C   G E   E C++    K L     G +      C   C
Sbjct: 5   KHHIFFCLNQRDASAARPCCAASGAEAAFEHCKSA--VKTLGLAGAGKVRVNRAGCLDRC 62

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEIIDA 171
              P+ ++      Y  +    +++I+ +
Sbjct: 63  EEGPVCVVYPEGVWYTYVDQSDIDDIVQS 91


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score = 42.0 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 89  PVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           P G + +V +     C +  G +        +    P        ++  +  C G C   
Sbjct: 23  PEGIKVNVGM---ASCGIAAGAQASYNKASQEYSGNPG-------VTISQTGCIGFCEME 72

Query: 148 PMVMIGKD-----TYEDLTPERLEEIIDAFSTGQ 176
           P+V I         Y  +T +++ E I  +  G+
Sbjct: 73  PLVEIMSKDKARIIYHHMTEDKIIEAISGYMNGE 106


>gi|116749278|ref|YP_845965.1| hypothetical protein Sfum_1845 [Syntrophobacter fumaroxidans MPOB]
 gi|116698342|gb|ABK17530.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 87

 Score = 42.0 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           + +C  + C  RG +  I++ +             G ++ +   C+G C + P + +  +
Sbjct: 10  LAICMGSSCFSRGNKHNIKIIKEY--IDRHGL--CGRVALKGHLCEGLCKDGPNITLNGE 65

Query: 156 TYEDLTPERLEEIIDA 171
            +  +    +  +++ 
Sbjct: 66  VFHSIDSASINVLLEE 81


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score = 42.0 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  + V   T     G +++  V R +I         D  +   EV C G C   P++ 
Sbjct: 19  DKTVIAVGSATCGRSAGAQEISSVLREEIA----EAGLD--VEIIEVGCIGLCYLEPIIT 72

Query: 152 IGK-----DTYEDLTPERLEEIIDAFSTGQGDTIRPG 183
           I K       Y  +T +  ++++  +  G        
Sbjct: 73  IIKPGHPAIFYGQVTKKLAKQLVTEYLQGNNPLPEHA 109


>gi|193214739|ref|YP_001995938.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110]
 gi|193088216|gb|ACF13491.1| ferredoxin, 2Fe-2S [Chloroherpeton thalassium ATCC 35110]
          Length = 102

 Score = 42.0 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ +C     G TP   C  +   +L++   +++            +      C   
Sbjct: 4   PKHHLLICASFRAGGTPQGICYKKESLQLMQYLEDELS-DRGMT----DVMISTTGCLNV 58

Query: 144 CVNAPMVMI--GKDTYEDL-TPERLEEIIDAFSTGQGDT 179
           C   P++++      Y  +   E ++EI+DA   GQ   
Sbjct: 59  CERGPIIVVYPEGYWYGQIENEEMIDEILDALEEGQAKE 97


>gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
 gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
          Length = 584

 Score = 42.0 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157
            C +  G +K+ +             N D +++     C G C   P+V +I  +   +Y
Sbjct: 9   SCGIAAGAKKVKDKLEAI--IDENKLNVDVSIT----GCIGMCFYEPIVDVIDDNGVFSY 62

Query: 158 EDLTPERLEEIIDA 171
            ++TPE ++EI++ 
Sbjct: 63  GNVTPELVQEIVEK 76


>gi|116748456|ref|YP_845143.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB]
 gi|116697520|gb|ABK16708.1| ferredoxin, 2fe-2s [Syntrophobacter fumaroxidans MPOB]
          Length = 106

 Score = 42.0 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 94  AHVQVC---GTTP----CMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
            H+ VC     T     C+ +   +LI     ++                      C   
Sbjct: 6   HHILVCASFRGTEAKGKCIKKESLQLISYLEEELDDRGINA---------MVSSTGCLKL 56

Query: 144 CVNAPMVMI--GKDTYEDLTPER-LEEIIDAFSTGQGDTIR 181
           C   P++++      Y  +T E  ++EI+DA   G+    R
Sbjct: 57  CEQGPIMVVYPQGYWYRSVTDENAVDEILDALEEGKPAQSR 97


>gi|255556610|ref|XP_002519339.1| soluble diacylglycerol acyltransferase [Ricinus communis]
 gi|223541654|gb|EEF43203.1| soluble diacylglycerol acyltransferase [Ricinus communis]
          Length = 332

 Score = 42.0 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            ++VC    C   G   L+E  +  +  +               +C G C + P V +  
Sbjct: 239 RIEVCMGNKCKKSGGAALLEEFQRVLGVEAA---------VVGCKCMGNCRDGPNVRVRN 289

Query: 155 DTYEDLTPERL 165
              +  T + +
Sbjct: 290 SVQDRNTDDSV 300


>gi|150025827|ref|YP_001296653.1| ferredoxin [Flavobacterium psychrophilum JIP02/86]
 gi|149772368|emb|CAL43848.1| Probable ferredoxin [Flavobacterium psychrophilum JIP02/86]
          Length = 83

 Score = 42.0 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV- 150
            +  + +C  + C     +++ +  ++ I +  LH+     +   ++EC G C  AP+V 
Sbjct: 7   PKKALFICNGSKC--GKHKEIKKQFKSSIKEGGLHKT----IEIFKIECSGRCKYAPIVY 60

Query: 151 -MIGKDTYEDLTPERLEEIIDAF 172
                + YE++  E+ ++II+  
Sbjct: 61  AQPQNNWYENVDLEKAKKIIEKM 83


>gi|72548103|ref|XP_843339.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363855|emb|CBZ12861.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 919

 Score = 42.0 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 23/127 (18%)

Query: 34  PPSRCQSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVG 91
           P    Q A +  L    E  +EG V  AA              V  IAT +  +QL    
Sbjct: 502 PSKMVQGAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK--- 547

Query: 92  TRAHV-----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV 145
            R  +      VC T    +RG E+LI      + Q      +D  L W   +C    C 
Sbjct: 548 NRVLLLEAVQSVCQTLGAAVRGSEELISALLAPLGQLWSQTPNDSPLLWSLFDCMATVCA 607

Query: 146 -NAPMVM 151
              P + 
Sbjct: 608 TLGPAMQ 614


>gi|309389875|gb|ADO77755.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Halanaerobium praevalens DSM 2228]
          Length = 124

 Score = 42.0 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           GTRA + V   T  +  G  ++++    ++ ++      D  +   +  C G C   P++
Sbjct: 24  GTRAEIIVGMGTCGIAAGAREILKAVLAEVEKR------DLDVRVTQTGCIGMCEKEPLM 77

Query: 151 MI-----GKDTYEDLTPERLEEII-DAFSTGQ 176
            +      + TY +L P  +++II +    GQ
Sbjct: 78  DVKLPGKERITYGNLNPADVQKIITEHLVNGQ 109


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score = 42.0 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             V  C  T C   G + +I+   + I  + L       +   +  C G C   P++++ 
Sbjct: 32  YQVLCCTGTGCSSSGSKSVIKALNHHIKSQGLQD----RVRVYKTGCFGFCKMGPILLVH 87

Query: 153 -GKDTYEDLTPERLEEIIDA-FSTGQ 176
            G+  Y  ++ +  E+++   F  GQ
Sbjct: 88  PGQVFYCLVSEKDTEDLVVQHFKRGQ 113


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score = 42.0 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                  +  +++   T  +  G + L +  + ++      R  + ++      C G C 
Sbjct: 15  YQKSENEKTLIKISMATCGITAGADTLYDFFKEEL-----EREGNASIKLVSTGCMGLCH 69

Query: 146 NAPMVMI-----GKDTYEDLTPERLEEIIDAFS 173
           + P + +       + + ++   + E+I+    
Sbjct: 70  SEPTIEVTIPGQQPEIFGNVDLPKAEKILKDIK 102


>gi|75907569|ref|YP_321865.1| hypothetical protein Ava_1346 [Anabaena variabilis ATCC 29413]
 gi|75701294|gb|ABA20970.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 109

 Score = 42.0 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 87  LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
             P   R  V+VC    C  +G ++++                   ++     C G C N
Sbjct: 13  TEPSTPR-CVRVCQHRTCKKQGAKEVLRAFAVLPVVD---------VTVTGSGCLGQCGN 62

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            PMV+I      Y  + P  +  +++    G
Sbjct: 63  GPMVLILPDMVWYSGIQPHEVPLLVEQHLLG 93


>gi|148907665|gb|ABR16961.1| unknown [Picea sitchensis]
          Length = 353

 Score = 42.0 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 24/92 (26%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            ++VC    C   G E L+E    +     +  +               +C G C NAP 
Sbjct: 258 VIKVCMGGKCKKSGSEMLLEALEERISKLGLGCEVEAVG---------CKCMGKCRNAPN 308

Query: 150 VMIG----------KDTYEDLTPERLEEIIDA 171
           V +            + +  +    ++ I+  
Sbjct: 309 VRVQTEEDGFHGGKGEVHMGVDIGDVDLILAQ 340


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score = 42.0 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM-----IGKDT 156
            C +  G +++       ++           +  ++  C G C   P+V      +G   
Sbjct: 12  SCGVAAGAQEVYLALEQYLNANS------RPVILKKTACIGMCFEEPIVQFVGSELGSIH 65

Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179
                PE +  I++ +  G+   
Sbjct: 66  IGKANPETITHILEDYIAGKTPA 88


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score = 42.0 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V +C    C   G  K++E  + +I Q+ L   +D  +  + V C G C   P+V +  
Sbjct: 11  VVCICAG-GCTSSGSLKILERFQTEIEQRGL---ADKIV-VKPVGCHGFCEQGPIVTVEP 65

Query: 155 D--TYEDLTPERLEEIIDAFSTG 175
           +   Y  ++   +  ++ + + G
Sbjct: 66  EKLFYTRVSENDVPALVVSIAKG 88


>gi|198282357|ref|YP_002218678.1| putative ferredoxin 2Fe-2S protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198246878|gb|ACH82471.1| putative ferredoxin 2Fe-2S protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 108

 Score = 42.0 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 22/109 (20%)

Query: 93  RAHVQVC-----GTTPCMLRGCEKLIEVCR------NKIHQKPLHRNSDGTLSWEEVECQ 141
           R H+  C       + C   G     ++ +       ++    +  NS G        C 
Sbjct: 9   RHHIFFCTNKRNDGSSCANHGSVASHQLAKVIISNLEQLGITNVMVNSSG--------CL 60

Query: 142 GACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDR 188
           G C + P+++I      Y     + + EII    T +G  ++      +
Sbjct: 61  GRCKDGPVLVIYPDGIWYTFGVEDDVREIIQEHIT-RGHIVKRLRLNGQ 108


>gi|70729607|ref|YP_259346.1| hypothetical protein PFL_2239 [Pseudomonas fluorescens Pf-5]
 gi|68343906|gb|AAY91512.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 250

 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P   R  V +C    C+ RG   L +  R ++ +        G L      CQ  C 
Sbjct: 142 SRVPPHAR-QVFLCTGPRCVRRGALALWKTLRRELLRLEHMETPGGVL-LTRTACQFPCN 199

Query: 146 NAPMVMI 152
             P++ +
Sbjct: 200 LGPVLTV 206


>gi|54298699|ref|YP_125068.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris]
 gi|148358555|ref|YP_001249762.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby]
 gi|53752484|emb|CAH13916.1| hypothetical protein lpp2763 [Legionella pneumophila str. Paris]
 gi|148280328|gb|ABQ54416.1| ferredoxin 2Fe-2S protein [Legionella pneumophila str. Corby]
          Length = 105

 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C          C   G E+  +  ++K+       +  G +   +  C G C + P
Sbjct: 8   HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKVRVSKSGCLGRCSSGP 65

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++I      Y   + E +E+II  +    G+ + P
Sbjct: 66  CIVIYPEGVWYTYSSFEDIEQII-KYHLIDGEIVEP 100


>gi|296139316|ref|YP_003646559.1| hypothetical protein Tpau_1599 [Tsukamurella paurometabola DSM
           20162]
 gi|296027450|gb|ADG78220.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
           20162]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  V VC    C  RG   L      ++ ++ L    D  ++     CQ  C +AP+V +
Sbjct: 136 RHQVLVCRGPRCSARGAAALSAALGAELRRRALDD-DDVLMTV--TGCQFPCNHAPVVTV 192

Query: 153 --GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185
                 Y  +T E +  +++     G+    R  P+
Sbjct: 193 QPDDAWYGGITVEDVPALVEDHLVDGRRLAHRLLPR 228


>gi|220935951|ref|YP_002514850.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997261|gb|ACL73863.1| ferredoxin, 2Fe-2S [Thioalkalivibrio sp. HL-EbGR7]
          Length = 101

 Score = 42.0 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 95  HVQVC-----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           H+  C         C   G  ++    + +   K L     G +      C   C   P+
Sbjct: 7   HIFFCTNCREDGNCCENYGASQIRAYAKQR--AKELGITGKGGVRVNTAGCLDRCNEGPV 64

Query: 150 VMI--GKDTYEDLTPERLEEIIDA 171
            ++      Y  +  + +EEI+  
Sbjct: 65  AVVYPEGVWYTYVDEQDVEEILQE 88


>gi|289522155|ref|ZP_06439009.1| NADP-reducing hydrogenase, subunit B [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503991|gb|EFD25155.1| NADP-reducing hydrogenase, subunit B [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 123

 Score = 41.6 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNA 147
           G +  + V   T  +  G  +++     ++     K         ++ E   C G C   
Sbjct: 26  GGKKKIIVGMGTCGIAAGAREVLTAILTELDKRGIKD--------VAVETTGCIGMCQYE 77

Query: 148 PMVMI-----GKDTYEDLTPERLEEIIDA 171
           P+V I      + TY ++ PE +  II  
Sbjct: 78  PLVDIIRPGEPRVTYGNIKPEDVSRIIAE 106


>gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 536

 Score = 41.6 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + VC    C+  G +K++E  +            D     + V C G C    +V I  
Sbjct: 22  TISVCVAAGCLALGSDKVLEELKRIF--------PDRI--VKGVGCLGLCSRGALVRIEP 71

Query: 155 D--TYEDLTPERLEEIID 170
           +    E   P+ ++EI++
Sbjct: 72  EGFVIEHARPDNIDEIVN 89


>gi|291615275|ref|YP_003525432.1| ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus ES-1]
 gi|291585387|gb|ADE13045.1| putative ferredoxin 2fe-2s protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 103

 Score = 41.6 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 24/109 (22%)

Query: 79  ATFYT---QF--QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSD 130
            + Y     F     P G       C          +   +  ++K   +          
Sbjct: 1   MSHYDKHVFFCVNQRPAGE----DCCNNHD-----AQAARDYVKDKVKQLGIS----TEK 47

Query: 131 GTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAF-STGQ 176
             +      C G C   P++++      Y  +    L+EII+     G+
Sbjct: 48  HQVRINSAGCLGRCELGPVLVVYPDAVWYTYVDRSDLDEIIEEHIRNGR 96


>gi|219116606|ref|XP_002179098.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409865|gb|EEC49796.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 294

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 88  SPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           SP+  R  +QVC +  C+  G  + + + +           +      EE  C   C   
Sbjct: 27  SPIPERVTLQVCLSPGCVADGAARTMHLLQAL---------APAHFVIEEGGCNSLCGYG 77

Query: 148 PMVMIGKDT---YEDLTPERLEEIIDAFSTGQGDTIRPGP 184
           P+V I  +    Y+ +  E+  EI+  +S      +  GP
Sbjct: 78  PVV-ISPEASNKYKKVVEEKALEIL--YSHNNDPNVPAGP 114


>gi|87310147|ref|ZP_01092279.1| ferredoxin, 2Fe-2S [Blastopirellula marina DSM 3645]
 gi|87287137|gb|EAQ79039.1| ferredoxin, 2Fe-2S [Blastopirellula marina DSM 3645]
          Length = 131

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 94  AHVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ +C            C  +G   L +  + ++ +  L     G +      C   C 
Sbjct: 6   HHIFICENRRAAGHPRGSCDEQGHGDLKDALKKELKRHGLK----GEVRANSAGCLDQCE 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P+++I      Y  +T + +  I++ 
Sbjct: 62  CGPVLVIYPQAIWYGAVTLQDVPRIVEE 89


>gi|145220156|ref|YP_001130865.1| ferredoxin, 2Fe-2S [Prosthecochloris vibrioformis DSM 265]
 gi|145206320|gb|ABP37363.1| ferredoxin, 2Fe-2S [Chlorobium phaeovibrioides DSM 265]
          Length = 102

 Score = 41.6 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 92  TRAHVQVC-----GTTP---CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
            + H+ VC        P   C  +    LI    +++  + +       ++     C   
Sbjct: 4   PKHHIFVCASFRAQGAPQGICHKKESLSLIPYFESELADRGMS-----DVAVSATACLNL 58

Query: 144 CVNAPMVMI--GKDTYEDL-TPERLEEIIDAFSTGQG 177
           C   P+V+I      Y ++ + E+++EI+DA   G+ 
Sbjct: 59  CEKGPIVVIYPENFWYGEVNSEEKVDEILDALEEGEA 95


>gi|297603543|ref|NP_001054236.2| Os04g0674100 [Oryza sativa Japonica Group]
 gi|255675872|dbj|BAF16150.2| Os04g0674100 [Oryza sativa Japonica Group]
          Length = 238

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM- 149
           G    ++VC    C  +G  +++               +   +      C G C   P  
Sbjct: 29  GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNF 79

Query: 150 -VMIGK---DTYEDL-TPERLEEIIDAF 172
              +       +  + T  R  ++++  
Sbjct: 80  GASVSGGGAAVFGHVGTAARAAQLLEHL 107


>gi|167950510|ref|ZP_02537584.1| Ferredoxin-like protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score = 41.6 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 93  RAHVQVC-----GTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R H+  C        PC  R          + ++ +  L     G +      C   C +
Sbjct: 5   RHHLFFCTNQRDDGHPCCGRFNAAGQCGYLKQRVKELELELAGPGGVRVNIAGCLDRCEH 64

Query: 147 APMVMIGKDT--YEDLTPERLEEIIDA 171
            P+++I  +   Y  +  + L+EI+  
Sbjct: 65  GPVLVIYPEAVWYTYVDRDDLDEILQR 91


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score = 41.6 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+HV VCG T C      K+I+       +  L       +   +  C G C   P+V++
Sbjct: 5   RSHVLVCGGTGCASSDSFKMIDEFDEAFKKYGLE----KEVKLVKTGCFGLCEAGPIVIV 60

Query: 153 --GKDTYEDLTPERLEEIIDA 171
                 Y  +    ++ I + 
Sbjct: 61  YPEGAFYSHVKLSDIDRITEE 81


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 116 CRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-F 172
            R ++ ++ L    D  +S  +  C G C   P++++      Y  +  + + EI++   
Sbjct: 4   LREELKKQGL----DEEVSVVQTGCHGLCALGPIMIVYPDATFYAMVKEDDIPEIVEEHL 59

Query: 173 STGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
             G+     P  ++    +    G+ SL D +  K+
Sbjct: 60  LKGR-----PVQRLLYDETVTPAGVKSLGDTDFYKK 90


>gi|298708046|emb|CBJ30399.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 274

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+  V VC  T C   G    ++  R             G +   E  CQG C   P ++
Sbjct: 41  TKGTVHVCTNTSCRKAGSRWTVDTFRAFA--------PPGDIKVLETGCQGRCGLGPNIL 92

Query: 152 --IGKDTYEDL-TPERLEEIID 170
               ++ Y  +  P  +  II+
Sbjct: 93  TRPSEEVYNGVAQPATVAAIIE 114


>gi|172035393|ref|YP_001801894.1| hypothetical protein cce_0477 [Cyanothece sp. ATCC 51142]
 gi|171696847|gb|ACB49828.1| hypothetical protein cce_0477 [Cyanothece sp. ATCC 51142]
          Length = 185

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMI 152
            + VC  + C  RG + +   C+    +      SD  +  +   C   C   P  ++M 
Sbjct: 107 KILVCQKSSCWKRGGKSV---CQQLEQELEQQGLSD-RVKIKLTGCLKQCKKGPNVVIMP 162

Query: 153 GKDTYEDLTPERLEEIIDA 171
            K  Y  + P  ++++++ 
Sbjct: 163 HKARYCQVQPGEVDKLVNK 181


>gi|124022573|ref|YP_001016880.1| ferredoxin [Prochlorococcus marinus str. MIT 9303]
 gi|123962859|gb|ABM77615.1| Ferredoxin [Prochlorococcus marinus str. MIT 9303]
          Length = 139

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 94  AHVQVCGT----TPCMLRGCEKLIEVCRNKIHQKPLH--RNSDGTLSWEEVECQGACVNA 147
            H+ +C T      C            +  I Q  L      +G +   +V+C   C + 
Sbjct: 31  HHLLLCATPNKAACCSAAVGNASWANLKKLIKQLDLENIDRPEGVVLRSKVDCLRICNDG 90

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG----QGDTIRPGPQIDRI 189
           P+++I      Y  +TPER+E I+     G    +   IR  PQ  R 
Sbjct: 91  PILLIWPDGIWYGGVTPERIESIVREHVLGGQPIEAWIIRRTPQQQRH 138


>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
 gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
          Length = 599

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V +C  T C+ +G  ++ E  + +     L  N++  +  +   C G C   P++ 
Sbjct: 3   DKKTVNICCGTGCLAKGSMEVYEEMKAQ--IAKLGANAEVNVKLKATGCDGLCEKGPVLK 60

Query: 152 I--GKDTY 157
           I      Y
Sbjct: 61  IYPDDIAY 68


>gi|300022058|ref|YP_003754669.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523879|gb|ADJ22348.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 386

 Score = 41.6 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 24/112 (21%)

Query: 97  QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT 156
           +VC   PC L G E+           +                C   C  AP +      
Sbjct: 29  RVCVGLPCALAGAEQFCHSLVESGLVRSDEIT--------RETCLAQCWRAPAIGRDGRI 80

Query: 157 YEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDNNSKKR 208
           Y                +G  +T   GP         +GG   L    +K+R
Sbjct: 81  Y----------------SGACETSDFGPAESFEQYCASGGYGVLKSCLAKRR 116


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score = 41.6 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + V   T  +  G   + +  R +   + + R+    ++  E  C G C + P V + +
Sbjct: 27  TILVSMGTCGLAAGARPVYDALRAEAEIQGMARS----VAVVETGCMGLCHSEPSVELME 82

Query: 155 D------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
                   Y  +T ++  +I+ A   G    +    +IDR   AP  
Sbjct: 83  HATGRRLIYGRVTGKQAAQIVAAGMAGAEGVV----EIDRSWYAPED 125


>gi|282883178|ref|ZP_06291777.1| putative NADH-quinone oxidoreductase chain f [Peptoniphilus
           lacrimalis 315-B]
 gi|300814451|ref|ZP_07094713.1| hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|281296990|gb|EFA89487.1| putative NADH-quinone oxidoreductase chain f [Peptoniphilus
           lacrimalis 315-B]
 gi|300511421|gb|EFK38659.1| hypothetical protein HMPREF9131_1055 [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 91

 Score = 41.6 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEV---CRNKIHQKPLHRNSDGTLSWEEVECQGAC------V 145
            V +C  + C L G   + +        +        +   L +E  +  G C       
Sbjct: 2   KVTICMCSKCTLMGANAIFDAVEYLHESLCAPGSEFCNAQNLEFEASDSLGICKENTDSE 61

Query: 146 NAPMVMIGKDTYEDLTPERLEEII 169
            +P+V I    Y + T + + EII
Sbjct: 62  ISPVVAIDDTIYTNATAQEISEII 85


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score = 41.6 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           TRA V V   T  +  G +K+++  +  +  + L       +  +   C G C   P V 
Sbjct: 20  TRARVVVGLGTCGIAAGGDKVMKALQAIVAGRVLD------IDVDFTSCIGMCYAEPTVE 73

Query: 152 IG-----KDTYEDLTPERLEEIIDAFSTGQGDT 179
           +         Y D+ PE +  +ID    G+   
Sbjct: 74  VALPGEASVIYGDVNPENVIRLIDEHVIGKKPV 106


>gi|159903758|ref|YP_001551102.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159888934|gb|ABX09148.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 114

 Score = 41.6 bits (97), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 94  AHVQVC----GTTPCMLRGCEKLIEVCRNKIHQKPLHR--NSDGTLSWEEVECQGACVNA 147
            H+ +C        C         +  +  +    L      +G +   +V+C   C   
Sbjct: 7   HHLLLCASPKNALCCKPENGINSWKRLKKILKDLNLEDPQRPEGIVLRSKVDCLRVCKEG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           P+++I      YE +TP+ +E+II+    G
Sbjct: 67  PILLIWPDGIWYEKVTPDLIEQIINQHVIG 96


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score = 41.6 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG-- 153
           V+VC  T C+  G + + E    +   + +  +S          C G C   P+V+ G  
Sbjct: 26  VRVCAGTGCLAGGSQGVYEALVEE--ARRIGLDSPVKFQARCSGCHGFCEEGPLVVCGMG 83

Query: 154 --KDTYEDLTPERLEEIIDAFSTGQ 176
             +  Y  +  E   EI+ A +  +
Sbjct: 84  DSEVLYRKVRREDALEILLALADDR 108


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score = 41.6 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGT---LSWEEVECQGACVN 146
            +  V VC  T C+  G  ++    +  I++K L      D     +  ++  C G C  
Sbjct: 23  QKKKVLVCAGTGCVAGGSLEIYNRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEM 82

Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
            P+V I  +   Y  +  E  EEI++ 
Sbjct: 83  GPLVRIEPENYLYLRVQIEDCEEIVNK 109


>gi|16329813|ref|NP_440541.1| hypothetical protein sll1584 [Synechocystis sp. PCC 6803]
 gi|1652298|dbj|BAA17221.1| sll1584 [Synechocystis sp. PCC 6803]
          Length = 134

 Score = 41.6 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 92  TRAHVQVCGTT---PCMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVECQGACV 145
            R     C  T    C         +  +    ++       + DG +   +  C   C 
Sbjct: 26  QRHLFLCCDQTKPKCCSKEDSLATWDYLKKRLPELGLDCTQSSRDGNIFRTKANCLRVCQ 85

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P++++      Y ++TP  +E+I+  
Sbjct: 86  QGPILLVYPEGIWYRNVTPTVMEKILQE 113


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRN------KIHQKPLHRNSDGT-LSWEEVECQGACVNA 147
            + VCG T C+  G +K+ +           +  +     + G  +  ++  C G C   
Sbjct: 26  KILVCGGTGCLAGGSDKIFDRFSELTAGMDHVEVRIGAEIAHGEHVGVKKSGCHGFCEMG 85

Query: 148 PMVMIG--KDTYEDLTPERLEEIIDA 171
           P+V I      Y  +  E  EEI + 
Sbjct: 86  PLVRIEPYNYLYLKVKLEDCEEIFEK 111


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score = 41.3 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 17/93 (18%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRN-----------KIHQKPLHRNSDGTLSWEEVEC 140
            +  + VC  T C+  G  ++ +               ++ ++P     D ++  ++  C
Sbjct: 22  QKKKILVCAGTGCVSSGALEIFDRLAELISQNGLDCQVELEKEPH----DKSIGMKKSGC 77

Query: 141 QGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            G C   P++ I      Y  +  +  EEI+D 
Sbjct: 78  HGFCEMGPLIRIEPEGYLYTKVKLQDCEEIVDR 110


>gi|302391063|ref|YP_003826883.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302203140|gb|ADL11818.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 121

 Score = 41.3 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
             +      +  V V   T  +  G  ++++   ++I+++      D  +   +  C G 
Sbjct: 17  DMKTRKSEGKPKVIVGMGTCGIAAGAREIMQALLDEINKR------DLDVIVTQTGCIGM 70

Query: 144 CVNAPMVMI-----GKDTYEDLTPERLEEII 169
           C   P+V +      + TY  +T E  ++II
Sbjct: 71  CEKEPLVDVKLPGKDRITYGGVTEEDAQKII 101


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score = 41.3 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPL--HRNSDGT---LSWEEVECQGACVN 146
            +  V VC  T C+  G  ++    +  I++K L      D     +  ++  C G C  
Sbjct: 23  QKKKVLVCAGTGCVAGGALEIYNRIKELINEKGLLVDLELDYEKEGIGVKKSGCHGFCEM 82

Query: 147 APMVMIGKD--TYEDLTPERLEEIIDA 171
            P+V I  +   Y  +  E  EEI+  
Sbjct: 83  GPLVRIEPENYLYLRVQIEDCEEIVAK 109


>gi|218247216|ref|YP_002372587.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 8801]
 gi|257061450|ref|YP_003139338.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
 gi|218167694|gb|ACK66431.1| 2Fe-2S ferredoxin [Cyanothece sp. PCC 8801]
 gi|256591616|gb|ACV02503.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
          Length = 97

 Score = 41.3 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            R  V +C  + C + G  K+       +   P     D  +      CQG C + P V 
Sbjct: 4   QRRSVMICQHSACKIEGAAKVFLAF--HLANLP----PD--VVIMSTGCQGQCSSGPTVR 55

Query: 152 I--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
           I   +  Y  + P+ +  I++     GQ    +  P+I 
Sbjct: 56  ILPEETWYCRVKPQDVTLIVEQHLRGGQPVKEKLHPRIH 94


>gi|125972861|ref|YP_001036771.1| ferredoxin [Clostridium thermocellum ATCC 27405]
 gi|256005731|ref|ZP_05430686.1| NADP-reducing hydrogenase, subunit B [Clostridium thermocellum DSM
           2360]
 gi|281417060|ref|ZP_06248080.1| ferredoxin [Clostridium thermocellum JW20]
 gi|125713086|gb|ABN51578.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Clostridium thermocellum ATCC 27405]
 gi|255990304|gb|EEU00431.1| NADP-reducing hydrogenase, subunit B [Clostridium thermocellum DSM
           2360]
 gi|281408462|gb|EFB38720.1| ferredoxin [Clostridium thermocellum JW20]
 gi|316940901|gb|ADU74935.1| ferredoxin [Clostridium thermocellum DSM 1313]
          Length = 122

 Score = 41.3 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
            Q  L        V V   T  +  G   ++     +++++ L       ++     C G
Sbjct: 16  DQINLRTSNHDIRVVVGMATCGIAAGARPVMNAFVEELNKRNLT-----NVAVTMTGCIG 70

Query: 143 ACVNAPMV-MIGKD----TYEDLTPERLEEIIDA 171
            C   P+V +I KD    TY  +TPE++  ++  
Sbjct: 71  MCKLEPIVEVIDKDGSKVTYVKMTPEKVARVVAE 104


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score = 41.3 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEI 168
           ++++     + Q+     +    +     C G C   P+V++  G+  Y+++ P+ ++EI
Sbjct: 2   EVLKAFEEAL-QRVGEVEATAKFT----GCHGFCERGPIVIVSPGEIFYQNVKPKDVDEI 56

Query: 169 IDA 171
           +  
Sbjct: 57  VQR 59


>gi|319761130|ref|YP_004125067.1| ferredoxin-like protein [Alicycliphilus denitrificans BC]
 gi|330822988|ref|YP_004386291.1| ferredoxin-like protein [Alicycliphilus denitrificans K601]
 gi|317115691|gb|ADU98179.1| ferredoxin-like protein [Alicycliphilus denitrificans BC]
 gi|329308360|gb|AEB82775.1| ferredoxin-like protein [Alicycliphilus denitrificans K601]
          Length = 113

 Score = 41.3 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           H+  C          C   G ++  E C+  +  K       G +   +  C   C   P
Sbjct: 12  HIFFCLNERSNGENCCAQHGAQQAFERCK--MLVKQQGLMGPGKVRVNKAGCMDRCAGGP 69

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTG-QGDTIRPGPQIDR 188
           + ++      Y  +    ++EI+++    G   + +R  P++ R
Sbjct: 70  IAVVYPEGVWYTYVDEADIDEIVESHLKNGVVVERLRTPPELGR 113


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score = 41.3 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157
            C +  G  +  E  + ++ ++ L+      +  + V C G C   P+V +I +D   TY
Sbjct: 13  SCGIAAGARETYEAIKAELEKRNLN------IKLKIVGCVGMCYREPLVDIITEDEIITY 66

Query: 158 EDLTPERLEEIIDA 171
             + P+++  II+ 
Sbjct: 67  GHVDPKKVPRIIEE 80


>gi|300114570|ref|YP_003761145.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113]
 gi|299540507|gb|ADJ28824.1| Fe2-S2-type ferredoxin [Nitrosococcus watsonii C-113]
          Length = 104

 Score = 41.3 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 11/93 (11%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R HV  C          C       +    + K   K L       +      C   C  
Sbjct: 7   RYHVFFCTNQRDDGRPCCQNHDALAIRNYAKEK--VKALGLARRRQVRINTAGCLNRCAQ 64

Query: 147 APMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
            P +++      Y   T + ++EII +    GQ
Sbjct: 65  GPAMVVYPEGTWYTYTTRKDIDEIITEHLMNGQ 97


>gi|307611585|emb|CBX01267.1| hypothetical protein LPW_29651 [Legionella pneumophila 130b]
          Length = 105

 Score = 41.3 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C          C   G E+  +  ++K+       +  G +   +  C G C + P
Sbjct: 8   HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKIRVSKSGCLGRCSSGP 65

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++I      Y   + E +E+II  +    G  + P
Sbjct: 66  CIVIYPEGVWYTYSSFEDIEQII-KYHLIDGKIVAP 100


>gi|320107078|ref|YP_004182668.1| Sucraseferredoxin family protein [Terriglobus saanensis SP1PR4]
 gi|319925599|gb|ADV82674.1| Sucraseferredoxin family protein [Terriglobus saanensis SP1PR4]
          Length = 119

 Score = 41.3 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 95  HVQVCGTT--------PCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
           HV +C            C   G +KL +  ++ I     K         +   E  C   
Sbjct: 7   HVFICTNERDESAARPSCRNEGAKKLKDAFKDAIKDAGLKH-------QIRANESGCLDQ 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           C + P+V++      Y  + P+ +EEI+ +   G
Sbjct: 60  CEHGPVVVVYPDAVWYGFVRPKDVEEIVQSHLVG 93


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score = 41.3 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157
            C +  G  +  E  + ++ ++ L       +  + V C G C   P+V +I +D   TY
Sbjct: 13  SCGIAAGARETYEAIKAELERRNLD------VKLKIVGCVGMCYREPLVDIITEDEIITY 66

Query: 158 EDLTPERLEEIIDA 171
             + P+++  II+ 
Sbjct: 67  GHVDPKKVPRIIEE 80


>gi|225181916|ref|ZP_03735350.1| ferredoxin, 2Fe-2S [Dethiobacter alkaliphilus AHT 1]
 gi|225167356|gb|EEG76173.1| ferredoxin, 2Fe-2S [Dethiobacter alkaliphilus AHT 1]
          Length = 104

 Score = 41.3 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 94  AHVQVCGTTP--------CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            H+ VC ++         C  +    ++E    +I+ + L     G +      C G C 
Sbjct: 6   HHIFVCTSSRPNGQQKGFCHSKDAFAIMETLLEEINDRGLG----GEVFVTNTGCLGFCE 61

Query: 146 NAPMVMI--GKDTYEDLTPERL 165
             P+V++      Y  ++P+ +
Sbjct: 62  KGPIVIVYPENIWYFSVSPDNV 83


>gi|302761634|ref|XP_002964239.1| hypothetical protein SELMODRAFT_406024 [Selaginella moellendorffii]
 gi|300167968|gb|EFJ34572.1| hypothetical protein SELMODRAFT_406024 [Selaginella moellendorffii]
          Length = 229

 Score = 41.3 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           PV  R  V+VC    C   G ++++   + KI        S  T      +C G C   P
Sbjct: 130 PVCAR--VEVCTGGKCRKAGSQQVLAAFQAKISSSSSPSLSSAT----SCKCMGMCGQGP 183

Query: 149 MVMIGKD------TYEDLTPERLEEIIDA 171
            V I          +  +  E ++ ++  
Sbjct: 184 NVRIQGAGDGAPLAFNHVGVEDVDPLLQQ 212


>gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 623

 Score = 41.3 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 86  QLSPVGTRAH--VQVCGTTPCMLRGCEKLIEVC---RNKIHQKPLHRNSDGTLS--WEEV 138
            +   G      + VC  T C+  G  K+ E       ++          G +     + 
Sbjct: 10  SVKKAGENITKRIVVCAGTGCVASGSIKVFESFIIVAKELGISVCVELKGGNIGTLLSKS 69

Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            CQG C   P+V I   +  Y ++  + ++EI+  
Sbjct: 70  GCQGFCQKGPLVNILPAEILYINVKVDDVKEILKK 104


>gi|219121272|ref|XP_002185863.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582712|gb|ACI65333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 243

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            V+VCG   C   G  K      N I+     +     +S E  +CQG C   P V++  
Sbjct: 45  KVEVCGFKDCKRAGGGK---RLENLINAIVEEKGLSDAISVEGCDCQGECGYGPNVVVDG 101

Query: 155 DTYEDL 160
               ++
Sbjct: 102 KLINNV 107


>gi|218260407|ref|ZP_03475736.1| hypothetical protein PRABACTJOHN_01399 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224535|gb|EEC97185.1| hypothetical protein PRABACTJOHN_01399 [Parabacteroides johnsonii
           DSM 18315]
          Length = 132

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             ++V   T  +  G ++++      + ++      D  ++  +  C G C   P V + 
Sbjct: 34  VQIRVSMATCGIAAGAKEIMNYFIEALDREK----VDALVT--QTGCMGYCYAEPTVEVT 87

Query: 153 --GKD--TYEDLTPERLEEIIDAF 172
             GK+   +  +   +++EII  +
Sbjct: 88  LPGKEPLVFGHVKKAKVDEIIARY 111


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP- 148
            G +A + V   T  +  G  +++    ++             ++  +  C G C   P 
Sbjct: 24  AGAKAKIVVGMGTCGIAAGAREVMNAILDE--VAKRQLTG---VTVSQTSCIGLCAQEPL 78

Query: 149 --MVMIG--KDTYEDLTPERLEEII 169
             +++ G  K TY  +   +  EI+
Sbjct: 79  VDVILPGQPKVTYGKVDAAKAREIV 103


>gi|123468|sp|P22658|HOXF_RHOOP RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
 gi|80659|pir||S03941 hydrogen dehydrogenase (EC 1.12.1.2) alpha chain, cytosolic -
          Rhodococcus sp. (fragment)
          Length = 37

 Score = 41.3 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAI 61
          +  ++ R    R +  +I +L   Q   G +    +
Sbjct: 4  IKAILERNGSERTR--LIDILWDVQHLYGHIPDEVL 37


>gi|38344917|emb|CAE03233.2| OSJNBa0018M05.8 [Oryza sativa Japonica Group]
 gi|90399197|emb|CAH68183.1| H0403D02.12 [Oryza sativa Indica Group]
 gi|125550199|gb|EAY96021.1| hypothetical protein OsI_17892 [Oryza sativa Indica Group]
          Length = 250

 Score = 40.9 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM- 149
           G    ++VC    C  +G  +++               +   +      C G C   P  
Sbjct: 29  GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNF 79

Query: 150 -VMIGK---DTYEDL-TPERLEEIIDAF 172
              +       +  + T  R  ++++  
Sbjct: 80  GASVSGGGAAVFGHVGTAARAAQLLEHL 107


>gi|37523977|ref|NP_927354.1| hypothetical protein glr4408 [Gloeobacter violaceus PCC 7421]
 gi|35214983|dbj|BAC92349.1| glr4408 [Gloeobacter violaceus PCC 7421]
          Length = 121

 Score = 40.9 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           +  C    C   G   ++     ++    L   SD  +  +   C   C N PM+++ + 
Sbjct: 8   IFACQNRTCRRDGSSAVLAALEGELACCGL---SD-QVELQATGCLSQCGNGPMLLVVQT 63

Query: 156 T------YEDLTPERLEEIIDA-FSTGQGDT 179
                  Y+ + PE +  ++      G+  T
Sbjct: 64  ATGRQIWYDRVRPEEMPLVVRRHLIEGKPVT 94


>gi|323141629|ref|ZP_08076511.1| hypothetical protein HMPREF9443_01290 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413894|gb|EFY04731.1| hypothetical protein HMPREF9443_01290 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 122

 Score = 40.9 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 14/85 (16%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             + V   T  +  G  +++     +++++ L       +  ++  C G C     V++ 
Sbjct: 26  TKIIVGMGTCGIAAGAREVMSAILQELNKRHL-----FDVQVQQTGCIGMCEKE--VLVD 78

Query: 154 -------KDTYEDLTPERLEEIIDA 171
                  + TY  +TPE + +II  
Sbjct: 79  VVRPGEARITYGKVTPEDVPKIIAE 103


>gi|168704828|ref|ZP_02737105.1| hypothetical protein GobsU_35147 [Gemmata obscuriglobus UQM 2246]
          Length = 114

 Score = 40.9 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 95  HVQVCGTTPCMLR----GCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACVNAPM 149
           HV +C    C       G +   +  ++++  + L            +V C   C   P+
Sbjct: 2   HVMLCVGDACCGAIGKDGAQAAWDALKDELKTRNLSLATGPTACYRTKVSCLRVCAGGPL 61

Query: 150 VMI--GKDTYEDLTPERLEEII-DAFSTGQGD---TIRPGPQIDRISSAPAGG 196
           +++      Y ++T +R+   + +    G+          P  +  ++ P  G
Sbjct: 62  LVVYPEGTWYGNMTADRIPRFVQEHLIDGKPIEEWVFARNPLPNPPTAEPVQG 114


>gi|54295549|ref|YP_127964.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens]
 gi|53755381|emb|CAH16877.1| hypothetical protein lpl2636 [Legionella pneumophila str. Lens]
          Length = 105

 Score = 40.9 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C          C   G E+  +  ++K+       +  G +   +  C G C + P
Sbjct: 8   HVFICTNQKAPGKQCCANSGGEEFFDFMKSKL--LEFDLHGPGKIRVSKSGCLGRCSSGP 65

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            ++I      Y   + E +E+II  +    G  + P
Sbjct: 66  CIVIYPEGVWYTYSSFEDIEQII-RYHLIDGKIVAP 100


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score = 40.9 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI------HQKPLHRNSDGT--LSWEEVECQGA 143
           +R  + +C  T C+  G  ++ E  R           +     + G   +  ++  C G 
Sbjct: 24  SRCRILICAGTGCLAGGSGEIYEKMRRLTEECPDVEVEFAPEAAHGESGVGVKKSGCHGF 83

Query: 144 CVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
           C   P++ I      Y  ++ +  E I +  +  +GD IR 
Sbjct: 84  CEMGPLMRIEPMGILYTKVSVDDCEAIFER-TIKKGDIIRH 123


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score = 40.9 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI----------HQKPLHRNSD---GTLSWEEV 138
           +R  + +C  T C+  G  ++ E                  +  H  ++   G +  ++ 
Sbjct: 24  SRCRILICAGTGCLAGGSGEIYEKMCELTAENPDVDVFFGPEIAHTEAEQKTGPVEVKKS 83

Query: 139 ECQGACVNAPMVMIG--KDTYEDLTPERLEEI 168
            C G C   P++ I      Y  +     EEI
Sbjct: 84  GCHGFCEMGPLMRIEPMGILYTKVQLSDCEEI 115


>gi|315651467|ref|ZP_07904490.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium
           saburreum DSM 3986]
 gi|315486287|gb|EFU76646.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium
           saburreum DSM 3986]
          Length = 389

 Score = 40.9 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 14/80 (17%)

Query: 14  SSFSFSEESAIWVNEVISRYPPSRCQSAVIPL--------LMRAQE----QEGWVSRAAI 61
             F FS  +  W+ + I+R    + ++  IP+        L++ Q     + G   R   
Sbjct: 200 KGFKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINRLIKIQRKLVQEFGREPRP-- 257

Query: 62  EVVANILDMAYIRVLEIATF 81
           + VA ++ +   +V EI +F
Sbjct: 258 DEVAKVMGIPVSKVREIMSF 277


>gi|302871902|ref|YP_003840538.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574761|gb|ADL42552.1| hypothetical protein COB47_1260 [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 129

 Score = 40.9 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G    V V   T  +  G   ++     +I ++ L       ++  +  C G C 
Sbjct: 21  FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NITVVQTGCIGLCK 75

Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171
             P+V +    K+  TY  +TPE++  I+  
Sbjct: 76  YEPIVEVYEPNKEKVTYVKMTPEKVTRIVAE 106


>gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum]
          Length = 1059

 Score = 40.9 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 133 LSWEEVECQGACVNAPM--VMIGKD---TYEDLTPERLEEIIDA 171
           ++     C G C N P+  V +      TY  +TPE +E I+ A
Sbjct: 38  VTVHPTGCVGMCHNEPLLDVQVAGRSRVTYTQVTPESVEGILKA 81


>gi|312135113|ref|YP_004002451.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis
           OL]
 gi|311775164|gb|ADQ04651.1| hypothetical protein Calow_1088 [Caldicellulosiruptor owensensis
           OL]
          Length = 129

 Score = 40.5 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G    V V   T  +  G   ++     +I ++ L       ++  +  C G C 
Sbjct: 21  FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NVTVVQTGCIGLCK 75

Query: 146 NAPMVMI---GKD--TYEDLTPERLEEII-DAFSTGQ 176
             P+V +    K+  TY  +TPE++ +++ +    G+
Sbjct: 76  YEPIVEVYEPNKEKVTYVRMTPEKVVKVVTEHLVNGK 112


>gi|260446977|emb|CBG76259.1| OO_Ba0005L10-OO_Ba0081K17.10 [Oryza officinalis]
          Length = 254

 Score = 40.5 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 15/86 (17%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    ++VC    C  +G  +++               +   +      C G C   P +
Sbjct: 33  GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGPNI 83

Query: 151 MI-----GKDTYEDL-TPERLEEIID 170
                  G   +  + T  R  ++++
Sbjct: 84  GASVSGGGAAVFGHVGTAARAAQLLE 109


>gi|121592704|ref|YP_984600.1| ferredoxin-like protein [Acidovorax sp. JS42]
 gi|222109485|ref|YP_002551749.1| ferredoxin-like protein [Acidovorax ebreus TPSY]
 gi|120604784|gb|ABM40524.1| ferredoxin-like protein [Acidovorax sp. JS42]
 gi|221728929|gb|ACM31749.1| ferredoxin-like protein [Acidovorax ebreus TPSY]
          Length = 113

 Score = 40.5 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 84  QFQLSPVGTRAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137
               +P   + H+  C          C   G ++  + C+  +  K       G +   +
Sbjct: 1   MSDTTPQYYQRHIFFCLNERTNGENCCAHHGAQQAFDRCK--MLVKQQGLMGPGKVRVNK 58

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175
             C   C   P+ ++      Y  +    ++EI+++    G
Sbjct: 59  AGCLDRCAGGPIAVVYPEGTWYTYVDESDIDEIVESHLKNG 99


>gi|284929584|ref|YP_003422106.1| DNA-directed RNA polymerase subunit alpha [cyanobacterium UCYN-A]
 gi|284810028|gb|ADB95725.1| DNA-directed RNA polymerase subunit alpha [cyanobacterium UCYN-A]
          Length = 314

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 26/112 (23%)

Query: 18  FSE-ESAIWVNEVISRYPPSRCQSAVIPL--LMRAQEQEGWVSRAAIEVVANILDMAYIR 74
           FS  ++   +  V+  YP      + IP+  L  +      + RA I  VA++LD +   
Sbjct: 221 FSPLKNINQIETVVPEYPDEENPQSQIPIEELQLSVRAYNCLKRAQINTVADLLDYSQED 280

Query: 75  VLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLH 126
           +LEI  F         G ++               E++IE  + ++      
Sbjct: 281 LLEIKNF---------GQKS--------------AEEVIEALQKRLGITLAQ 309


>gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1]
 gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 659

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 13/81 (16%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
             G    + VC    CM +G   LIE   N              +  + V C   C N  
Sbjct: 579 KDGNGPEITVCIGEGCMKKGSISLIEKLVNL------------PVKVKGVFCLENCGNGV 626

Query: 149 MVMIGKDTYEDLTPERLEEII 169
            V +  +    +TPE   E I
Sbjct: 627 SVKVNDEIL-HVTPENALESI 646


>gi|307720219|ref|YP_003891359.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294]
 gi|306978312|gb|ADN08347.1| ferredoxin, 2Fe-2S [Sulfurimonas autotrophica DSM 16294]
          Length = 124

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C+    + L +    K+ Q+ +     GT+      C   C   P++++  G   Y  L
Sbjct: 25  SCVTPATQDLFQYLAQKLMQEGIM----GTVQPIRTSCMNRCSAGPVMLVEPGHTMYAGL 80

Query: 161 TPERLEEIIDAFSTG 175
           T E++++II     G
Sbjct: 81  TKEKIDKIISEHIIG 95


>gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
 gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 591

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + +C  T  +  G +K+       I +K +           +  C+G C N  +V
Sbjct: 2   GEAIKILICQGTGGVSAGAKKVEAEFLRVIGEKGVDATVGKRCDVIKTGCRGLCANDVLV 61

Query: 151 MI-----GKDTYEDLTPERLEEIIDA 171
            I     G+ TY+ + PE +E+I+  
Sbjct: 62  DIVDPELGRVTYDFVLPEEVEKIVAE 87


>gi|296134041|ref|YP_003641288.1| ferredoxin [Thermincola sp. JR]
 gi|296032619|gb|ADG83387.1| ferredoxin [Thermincola potens JR]
          Length = 138

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           QL+P   +  + V   T C ++ G   + +    ++         D       V C+GAC
Sbjct: 39  QLAPDSAQPRITVGMGT-CGIKAGARHVFQAFGEELK----QVGCDAV--LVPVGCKGAC 91

Query: 145 VNAPMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
              P+V +         Y ++ PE+++ I+      +      
Sbjct: 92  SYEPLVEVKLPGLPTVLYGNVDPEKVKHIVRQHLMKKQPVHEW 134


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V +   +  +  G  K+ E  +++I         + ++  E+  C G C   P+V 
Sbjct: 2   EKYKVIIGQGSCGIAAGAAKVEESFKDQI------TAKNLSIDLEKTGCIGTCYLEPIVD 55

Query: 152 I-----GKDTYEDLTPERLEEIIDAFSTGQGD 178
           +      K TY ++    +E I+D    GQ +
Sbjct: 56  VVDPSGNKITYVNVDTSDVERIVDEHILGQKN 87


>gi|309390026|gb|ADO77906.1| hypothetical protein Hprae_1781 [Halanaerobium praevalens DSM 2228]
          Length = 79

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV---NAPMV 150
             VQ+C  + C L G   ++E   N + +          +  E V+C   C    NAP+V
Sbjct: 2   VKVQICVGSHCSLVGALNILETLEN-LKEDYPE-----QIKIERVKCMDRCGDIKNAPVV 55

Query: 151 MIGKD 155
            +  +
Sbjct: 56  KVDDE 60


>gi|302342953|ref|YP_003807482.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Desulfarculus baarsii DSM 2075]
 gi|301639566|gb|ADK84888.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Desulfarculus baarsii DSM 2075]
          Length = 125

 Score = 40.5 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 74  RVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL 133
           RV E      Q  L   G +  + V   T  +  G   ++    +++  K      D  +
Sbjct: 15  RVHE------QINLREDGAQVKITVHMGTCGIASGARDVLNAAMDELD-KSGRT--DIII 65

Query: 134 SWEEVECQGACVNAPMVMI---GKDT--YEDLTPERLEEIIDAFS 173
           +     C G C   PM+ +    ++   Y  +   ++ +I +  +
Sbjct: 66  T--TSGCAGLCSQEPMITVERLNEEPIKYVFVDNAKMRQIFNRHA 108


>gi|284176189|ref|YP_003406466.1| hypothetical protein Htur_5162 [Haloterrigena turkmenica DSM 5511]
 gi|284017846|gb|ADB63793.1| hypothetical protein Htur_5162 [Haloterrigena turkmenica DSM 5511]
          Length = 121

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 94  AHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC--- 144
           A V VC          C   G +  +E   + + ++    N    +S  E  C G C   
Sbjct: 14  AQVFVCTNDRDSEYVCCADVGGQATLEAVTDWLRERDAFWNP---ISVIETGCLGLCSED 70

Query: 145 VNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
             A  +    + Y D+ P  + ++++  +    D  R G +  R +  P+ 
Sbjct: 71  GTAIAIQPRDEWYSDVRPAEVPDLLE--TEFGPDAERVGEEYRRRTDDPSA 119


>gi|78776534|ref|YP_392849.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251]
 gi|78497074|gb|ABB43614.1| ferredoxin, 2Fe-2S [Sulfurimonas denitrificans DSM 1251]
          Length = 124

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C+    + L +    K+ ++ +     GT+      C   C + P++++  G   Y  L
Sbjct: 25  SCVTPQTQDLFQHLAQKLMKEGVM----GTIQPIRTSCLSRCSSGPVMLVEPGHFMYAAL 80

Query: 161 TPERLEEIIDAFSTG 175
           T E+++ I++    G
Sbjct: 81  TKEKIDRIVEEHLIG 95


>gi|149925916|ref|ZP_01914179.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105]
 gi|149825204|gb|EDM84415.1| Fe2-S2-type ferredoxin [Limnobacter sp. MED105]
          Length = 103

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 95  HVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           HV  C         C    C         K   K L  N  G +   +  C   C   P+
Sbjct: 7   HVFFCTNQRPNNESCC-ADCHASAAHAHAKERIKKLGLNGQGKIRMNKAGCLDRCDEGPV 65

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175
           +++      Y  +    ++EIID+   G
Sbjct: 66  MVVYPEGVWYTYVDISDVDEIIDSHLVG 93


>gi|288956851|ref|YP_003447192.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
 gi|288909159|dbj|BAI70648.1| 2Fe-2S ferredoxin [Azospirillum sp. B510]
          Length = 119

 Score = 40.5 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
              P G +          C  +G EKL +  + +          DG +      C   C 
Sbjct: 17  NRRPDGHKRG-------SCAAQGSEKLRDYMKAR----ARELGFDGKVRINSAGCLDRCE 65

Query: 146 NAPMVMI--GKDTYEDLTPERLEEII 169
             P ++I      Y   +   +++I+
Sbjct: 66  LGPTLVIYPEGVWYSYHSTADIDDIL 91


>gi|150388474|ref|YP_001318523.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149948336|gb|ABR46864.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 129

 Score = 40.1 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 10/83 (12%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
               + V   T  +  G          +I ++ +       +   +V C G C + P+V 
Sbjct: 30  KHIKIMVGMATCGIAAGARDTFNTLLEEIDKRKMK-----NVYLVQVGCMGYCHDEPIVQ 84

Query: 152 IGK-----DTYEDLTPERLEEII 169
           +         Y  +  E+  EII
Sbjct: 85  VNAPGASPVLYGHINQEKAIEII 107


>gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
          Length = 601

 Score = 40.1 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           +  V VC    C+ +   ++ E  + K   +      +     +  +   C G C   P+
Sbjct: 4   KKIVNVCCGAGCLAKHSMEVFEELKKKVAELGANAEVKTE---VQLKATGCDGLCEKGPV 60

Query: 150 VMI--GKDTY 157
           + I      Y
Sbjct: 61  IKIYPDDIAY 70


>gi|148270046|ref|YP_001244506.1| ferredoxin-like protein [Thermotoga petrophila RKU-1]
 gi|170288730|ref|YP_001738968.1| ferredoxin-like protein [Thermotoga sp. RQ2]
 gi|281412073|ref|YP_003346152.1| Sucraseferredoxin family protein [Thermotoga naphthophila RKU-10]
 gi|147735590|gb|ABQ46930.1| Ferredoxin-like protein [Thermotoga petrophila RKU-1]
 gi|170176233|gb|ACB09285.1| ferredoxin-like protein [Thermotoga sp. RQ2]
 gi|281373176|gb|ADA66738.1| Sucraseferredoxin family protein [Thermotoga naphthophila RKU-10]
          Length = 126

 Score = 40.1 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G R  + V   T  +  G ++ ++     +++  +       ++  +  C G C   P 
Sbjct: 27  TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNI-----NDIAVVQSGCMGLCEVEPT 81

Query: 150 VMIGKD-----TYEDLTPERLEEIID 170
           V +  +      Y  +TPE  + I+ 
Sbjct: 82  VEVRLEGQEPVIYGRVTPENAKRIVK 107


>gi|15642786|ref|NP_227827.1| NADP-reducing hydrogenase, subunit B [Thermotoga maritima MSB8]
 gi|4980494|gb|AAD35105.1|AE001689_11 NADP-reducing hydrogenase, subunit B [Thermotoga maritima MSB8]
          Length = 128

 Score = 40.1 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 90  VGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            G R  + V   T  +  G ++ ++     +++  +       ++  +  C G C   P 
Sbjct: 29  TGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNI-----NDIAVVQSGCMGLCEVEPT 83

Query: 150 VMIGKD-----TYEDLTPERLEEIID 170
           V +  +      Y  +TPE  + I+ 
Sbjct: 84  VEVRLEGQEPVIYGRVTPENAKRIVK 109


>gi|78213488|ref|YP_382267.1| putative ferredoxin like protein [Synechococcus sp. CC9605]
 gi|78197947|gb|ABB35712.1| putative ferredoxin like protein [Synechococcus sp. CC9605]
          Length = 120

 Score = 40.1 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 94  AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ +C T      C      +     +    ++  +   R  +G +   + +C   C  
Sbjct: 6   HHLLLCATATKAKCCDSALGAQTWNALKSIVRELDLENAAR-PEGIVLRSKADCLRVCER 64

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            P++++      Y D++P+R++ II+    GQ      
Sbjct: 65  GPILLVWPDGIWYSDVSPDRVKRIIEQHIIGQQPVDEW 102


>gi|307136211|gb|ADN34049.1| diacylglycerol acyltransferase [Cucumis melo subsp. melo]
          Length = 331

 Score = 40.1 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 17/90 (18%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            ++VC    C   G   L+E     +  +               +C G C + P V +  
Sbjct: 240 RIEVCMGNKCKKAGAAALMEEFERVMGDEAA---------VCGCKCMGKCRDGPNVRVLG 290

Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQG 177
                       +  E ++ I+  +   +G
Sbjct: 291 SMEMQNPLCIG-VGVEDVDRIVAEYLGQKG 319


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score = 40.1 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKD--TY 157
            C +  G   +    R  +   P        +   +V C G C   P+V +        Y
Sbjct: 12  SCGIAAGARPVEAKLRTLLEGHP-------EIEIRKVGCIGLCFQEPLVEVEVDGKSTMY 64

Query: 158 EDLTPERLEEIIDAFSTG 175
             +T E +E+I+     G
Sbjct: 65  GHVTEESVEDIVKKHVLG 82


>gi|255020292|ref|ZP_05292360.1| ferredoxin family protein [Acidithiobacillus caldus ATCC 51756]
 gi|254970212|gb|EET27706.1| ferredoxin family protein [Acidithiobacillus caldus ATCC 51756]
          Length = 115

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 18/103 (17%)

Query: 81  FY--TQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
           FY    F        G     Q C  +    R         +  +          G +  
Sbjct: 15  FYERHLFICLNRRESGE----QACNNSDIAERAFHSAKRHAKT-LGIHGA-----GKVRV 64

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTG 175
               C G C   P  ++      Y  +  + L EI+++    G
Sbjct: 65  NRSGCLGRCSEGPTAVVYPDGVWYTYVDEDDLIEIVESHLRDG 107


>gi|146309582|ref|YP_001190047.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp]
 gi|145577783|gb|ABP87315.1| hypothetical protein Pmen_4568 [Pseudomonas mendocina ymp]
          Length = 241

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 86  QLSPVGTRA----------HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            + PV               + +C    C  +G   L +  R ++         DG +  
Sbjct: 117 DVPPVPAHHAWSQIPPHAQRLLLCNGPRCTRKGALGLWKTLRQRLK-AAGKLECDGGVHI 175

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG 177
              +CQ  C   P   +    + Y       +  ++D     G+ 
Sbjct: 176 TRSQCQFPCDLGPTASLYPQGEWYGIRDEAAVIRLVDERLVAGRA 220


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVC----RNKIHQK----PLHRNSDGTLSWEEVECQGACVN 146
            + VC  T C+  G +K+ E      +++   +    P  +     +  ++  CQG C  
Sbjct: 25  RILVCSGTGCIATGSQKIYEEFLKIAKDEPGIRIDFAPHGQGE--HVGIKKTGCQGVCEL 82

Query: 147 APMVMI--GKDT--YEDLTPERLEEIIDAFSTGQGDTI 180
            P+V I  G     Y  +      EI +   + +GD +
Sbjct: 83  GPLVRIQKGDQVVQYTKVQLSDCREIFE--RSVKGDDV 118


>gi|322503053|emb|CBZ38137.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 919

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 39  QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           QSA +  L    E  +EG V  AA              V  IAT +  +QL     R  +
Sbjct: 507 QSAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK---NRVLL 552

Query: 97  -----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV-NAPM 149
                 VC T    +RG E+LI      + Q      +D  L W   +C    C    P 
Sbjct: 553 LEAVQSVCQTLGAAVRGSEELISTLLAPLGQLWSQTPNDSPLLWSLFDCMATVCATLGPA 612

Query: 150 VM 151
           + 
Sbjct: 613 MQ 614


>gi|294102540|ref|YP_003554398.1| NADP-reducing hydrogenase, subunit B [Aminobacterium colombiense
           DSM 12261]
 gi|293617520|gb|ADE57674.1| NADP-reducing hydrogenase, subunit B [Aminobacterium colombiense
           DSM 12261]
          Length = 122

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           +  + V   T  +  G  +++    ++I      +     ++ +   C G C + P+V +
Sbjct: 28  KVVIIVGMGTCGIAAGAREIMTAIMDEI-----EKRKLNEVNVQTTGCIGMCQDEPLVDV 82

Query: 153 --GKD--TYEDLTPERLEEII----------DAFSTGQGD 178
                  TY ++ P  +  II          +  + G+ D
Sbjct: 83  IRDGKRITYGNVKPSDIPVIITEHVVNGHIVEKLAIGRAD 122


>gi|146101171|ref|XP_001469044.1| hypothetical protein [Leishmania infantum]
 gi|134073413|emb|CAM72141.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 919

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 39  QSAVIPLLMRAQE--QEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHV 96
           QSA +  L    E  +EG V  AA              V  IAT +  +QL     R  +
Sbjct: 507 QSAAVEALRSMLEMAEEGQVDAAA-----------PAIVRSIATCFGAYQLK---NRVLL 552

Query: 97  -----QVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG-ACV-NAPM 149
                 VC T    +RG E+LI      + Q      +D  L W   +C    C    P 
Sbjct: 553 LEAVQSVCQTLGAAVRGSEELISTLLAPLGQLWSQTPNDSPLLWSLFDCMATVCATLGPA 612

Query: 150 VM 151
           + 
Sbjct: 613 MQ 614


>gi|150391792|ref|YP_001321841.1| ferredoxin [Alkaliphilus metalliredigens QYMF]
 gi|149951654|gb|ABR50182.1| ferredoxin [Alkaliphilus metalliredigens QYMF]
          Length = 119

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +    GTR  V +     C +  G   ++     ++ ++ L       +   +  C G C
Sbjct: 18  RTEKGGTRIVVGMAT---CGIASGARPVMMALMEEVKKRNLE-----HIIVTQTGCIGVC 69

Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEII 169
              P+V I      K TY D+T E+  ++I
Sbjct: 70  KYEPIVEIYKEGEDKVTYVDMTAEKARKVI 99


>gi|124005441|ref|ZP_01690282.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134]
 gi|123989263|gb|EAY28841.1| putative 2Fe-2S ferredoxin [Microscilla marina ATCC 23134]
          Length = 108

 Score = 39.7 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT---LSWEEVECQGACVNAPMV- 150
            V VC  + C  +G     +  R           S G    +      C G C  AP+V 
Sbjct: 11  TVLVCTGSKCGSKGGNNHYKSLRAM-------TRSAGKKDEVQIIRTACSGNCKMAPLVG 63

Query: 151 -MIGKDTYEDLTPERLEEIIDAF 172
            M     Y  +  +++ ++    
Sbjct: 64  IMPKNKWYGQVNNDKVVKLFGKL 86


>gi|302391320|ref|YP_003827140.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302203397|gb|ADL12075.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 118

 Score = 39.7 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 108 GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK-----DTYEDLTP 162
           G  +++ V   ++ ++ +       ++  +  C G C   P+V + +      TY ++TP
Sbjct: 41  GAREVLNVISEELDRQEID-----NVTLNQRGCIGLCHYEPIVEVKESDQEVVTYGNITP 95

Query: 163 ERLEEIIDA 171
           E    II+ 
Sbjct: 96  EGARRIIEE 104


>gi|299143935|ref|ZP_07037015.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518420|gb|EFI42159.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 91

 Score = 39.7 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTL------SWEEVECQGACVN-- 146
            V +C  + C L G   + +        K      +           E   C   C N  
Sbjct: 2   KVTICMGSRCTLMGANAIYDAVDF---LKDNICTPESDYCSAENLEIELSHCMNYCKNAE 58

Query: 147 ----APMVMIGKDTYEDLTPERL-EEIIDAFS 173
               AP+V++  +     T + +  +IID   
Sbjct: 59  HGNLAPIVIVDDEIIYKATAQEVSAKIIDKLK 90


>gi|258513530|ref|YP_003189752.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777235|gb|ACV61129.1| NADP-reducing hydrogenase, subunit B [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 119

 Score = 39.7 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
            V V   T  +  G  + ++    +I  K +       ++  +  C GAC   P+V I  
Sbjct: 28  TVNVSMGTCGIAAGARETMKTLIEEISSKNIK-----DIALTQTGCLGACQQEPLVQIQK 82

Query: 154 ---KDTYEDLTPERLEEIIDA-FSTGQ 176
              K TY ++  E+  +I++     G+
Sbjct: 83  GGEKVTYINVDQEKARQIVNRHLLEGK 109


>gi|119356125|ref|YP_910769.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
 gi|119353474|gb|ABL64345.1| ferredoxin, 2Fe-2S [Chlorobium phaeobacteroides DSM 266]
          Length = 100

 Score = 39.7 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEV------CRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
           AHV VC       RG EK           + ++ Q    +   G +      C G C N 
Sbjct: 11  AHVFVCTND----RGGEKKSCADNNSQLTKARLKQAVDEKGWRGKVRISTSGCMGLCSNG 66

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
             VMI   K  +  + P+ ++EI+ A
Sbjct: 67  SHVMIYPQKVWFSGVLPDDVDEIVSA 92


>gi|313226141|emb|CBY21284.1| unnamed protein product [Oikopleura dioica]
          Length = 4621

 Score = 39.7 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 99   CGTTPCMLR--GCE-KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            C +  C L+  G E  L+E   +++  +      D       + C  AC +A
Sbjct: 2671 CASALCKLKISGSESNLMEFIIDRLLLQKGETTPDNLC-LNLLACFAACDHA 2721


>gi|269929061|ref|YP_003321382.1| hypothetical protein Sthe_3160 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788418|gb|ACZ40560.1| hypothetical protein Sthe_3160 [Sphaerobacter thermophilus DSM
           20745]
          Length = 179

 Score = 39.7 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC--QGACVNAPM 149
           TR HV +C    C  +G + +    R ++ +K L       +      C     C   P 
Sbjct: 4   TRKHVLICTAQHCNQKGAQAVAGRLRIELKRKGLD------VDVLANTCDSIDICDIGPN 57

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           +++   +  Y  +    + E++++   G     R
Sbjct: 58  IVVYPDRIIYHGVKTSDIPELVESLRPGGKPVER 91


>gi|15807573|ref|NP_296310.1| hypothetical protein DR_2591 [Deinococcus radiodurans R1]
 gi|6460424|gb|AAF12135.1|AE002088_12 hypothetical protein DR_2591 [Deinococcus radiodurans R1]
          Length = 121

 Score = 39.7 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEEVECQGACVNAPMVMI 152
           H+ +C  + C  R    L +   N + +  L      G++   +  C GAC   P + +
Sbjct: 13  HLLLCRGSSCQQRNSVLLHKALWNALERDGLAYYKQGGSVRLTDSGCLGACKFGPTLCV 71


>gi|320102434|ref|YP_004178025.1| Sucraseferredoxin family protein [Isosphaera pallida ATCC 43644]
 gi|319749716|gb|ADV61476.1| Sucraseferredoxin family protein [Isosphaera pallida ATCC 43644]
          Length = 129

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 94  AHVQVCGTT--------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
            HV +CG T         C   G + L E  + +  +  L       +      C   C 
Sbjct: 6   HHVFICGNTRAPGHSRGCCDPTGKQPLREAFKEEFRKVGLGST----VRANHAGCLDQCE 61

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDA 171
             P V+I      Y  +  E +  I++ 
Sbjct: 62  LGPTVVIYPQNIWYGRVRIEDVPRIVER 89


>gi|300868871|ref|ZP_07113477.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333088|emb|CBN58669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 108

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + VC    C+  G  +++E         P        ++ +   CQG C   P V I  
Sbjct: 17  CILVCQYQSCLRNGAAEVLEAFEAA--AVPG-------ITVQASGCQGQCSIGPTVRITP 67

Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQID 187
            +  Y  + P  ++ I++     G+       P+I 
Sbjct: 68  EEIWYCRVKPTDVQLIVEQHLQGGKPVDALLNPRIH 103


>gi|256839948|ref|ZP_05545457.1| NADP-reducing hydrogenase subunit B [Parabacteroides sp. D13]
 gi|262381804|ref|ZP_06074942.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_33B]
 gi|298375633|ref|ZP_06985590.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 3_1_19]
 gi|256738878|gb|EEU52203.1| NADP-reducing hydrogenase subunit B [Parabacteroides sp. D13]
 gi|262296981|gb|EEY84911.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_33B]
 gi|298268133|gb|EFI09789.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 3_1_19]
          Length = 132

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             ++V   T  +  G ++++      + ++ +    D  ++  +  C G C   P + I 
Sbjct: 34  VQIKVSMATCGIAAGAKEIMSYFIEVLDRQKI----DALVT--QTGCMGYCYAEPTIEIK 87

Query: 153 --GKD--TYEDLTPERLEEIIDAF 172
             G++   +  +   ++EEIID +
Sbjct: 88  LPGQEPLVFGYVDKAKVEEIIDKY 111


>gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 620

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 16/99 (16%)

Query: 83  TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
           + F+  P      + +   T     G  ++  V   +  +  +        S     C G
Sbjct: 15  SLFRDEP-----VIFLGSATCGRSAGAHEIERVLLERASELSVE------CSIVHTGCMG 63

Query: 143 ACVNAPMVMI-GKDT----YEDLTPERLEEIIDAFSTGQ 176
            C   PMV +   DT    Y  +     + II   + G+
Sbjct: 64  LCYAEPMVTVFNGDTRGAIYGPVNRRLAKRIIQELADGE 102


>gi|146296867|ref|YP_001180638.1| hypothetical protein Csac_1862 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410443|gb|ABP67447.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 129

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G    + V   T  +  G   ++     +I ++ L       ++  +  C G C 
Sbjct: 21  FRKQQGEGIRIVVGMATCGIAAGARPVMLKFVEEIQKRSLK-----NVTVVQTGCIGLCK 75

Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171
             P+V +    K+  TY  +TPE++  ++  
Sbjct: 76  YEPIVEVYEPNKEKVTYVKMTPEKVSRVVAE 106


>gi|113478112|ref|YP_724173.1| hypothetical protein Tery_4743 [Trichodesmium erythraeum IMS101]
 gi|110169160|gb|ABG53700.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 83

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNAPMVM 151
           +  + VC +  C  +G  K++   +            D   ++ ++  C G C N PM++
Sbjct: 8   KRLLLVCQSRTCRKQGSAKVLANFQKF----------DMPNITIKKSGCLGKCGNGPMIL 57

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +   +  Y  +  + +  I++ 
Sbjct: 58  VLPEEVWYSHVELQNISVIMEK 79


>gi|150007687|ref|YP_001302430.1| NADP-reducing hydrogenase subunit B [Parabacteroides distasonis
           ATCC 8503]
 gi|255013608|ref|ZP_05285734.1| NADP-reducing hydrogenase subunit B [Bacteroides sp. 2_1_7]
 gi|301310276|ref|ZP_07216215.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 20_3]
 gi|149936111|gb|ABR42808.1| NADP-reducing hydrogenase B chain - Desulfovibrio fructosovorans
           gi|466364|gb|AAA87055.1| potential NAD-reducing
           hydrogenase subunit [Parabacteroides distasonis ATCC
           8503]
 gi|300831850|gb|EFK62481.1| NADP-reducing hydrogenase, subunit B [Bacteroides sp. 20_3]
          Length = 134

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             ++V   T  +  G ++++      + ++ +    D  ++  +  C G C   P + I 
Sbjct: 36  VQIKVSMATCGIAAGAKEIMSYFIEVLDRQKI----DALVT--QTGCMGYCYAEPTIEIK 89

Query: 153 --GKD--TYEDLTPERLEEIIDAF 172
             G++   +  +   ++EEIID +
Sbjct: 90  LPGQEPLVFGYVDKAKVEEIIDKY 113


>gi|91786159|ref|YP_547111.1| ferredoxin-like protein [Polaromonas sp. JS666]
 gi|91695384|gb|ABE42213.1| Ferredoxin-like protein [Polaromonas sp. JS666]
          Length = 124

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 30/129 (23%)

Query: 56  VSRAAIEVVANILDMAYIRVLEIATFY--TQF---QLSPVGTRAHVQVCGTTPCMLRGCE 110
           +S+ A+   A             A++Y    F      P G            C     +
Sbjct: 5   ISQDAVPAPAKA-----------ASYYERHIFFCLNQRPPGED---------SCANHQAQ 44

Query: 111 KLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEI 168
           +  + C+++   K       G +   +  C   C   P+ ++  +   Y  +    ++EI
Sbjct: 45  EGFDRCKSQ--VKAAGLAGPGKVRVNKAGCLDRCAGGPVAVVYPEAVWYSYVDAHDIDEI 102

Query: 169 IDA-FSTGQ 176
           +++    GQ
Sbjct: 103 VESHLKNGQ 111


>gi|255082578|ref|XP_002504275.1| predicted protein [Micromonas sp. RCC299]
 gi|226519543|gb|ACO65533.1| predicted protein [Micromonas sp. RCC299]
          Length = 281

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQK--PLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
           + VC    C  RG  +L       +     P   N       +   C  AC    +V + 
Sbjct: 189 IVVCTNNACAKRGARELKAELERAVGATAAPNGSNRGARCVVKGARCMDACGAGCVVRVV 248

Query: 153 ---GKDTYEDLTPERLEEIIDAFSTGQG 177
              G +T+  +       ++   +TG+ 
Sbjct: 249 GVAGLETHLLVDASEA-GVVAELATGRA 275


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-----GKDT 156
            C +  G + L     +KI       N D  +S     C G C   P++ +         
Sbjct: 16  SCGIAAGAKDLYGELASKI-----ENNPD--VSLSHTSCNGMCFKEPILEVFYPDGNHLM 68

Query: 157 YEDLTPERLEEIIDAF 172
             ++  + L++I+D  
Sbjct: 69  MGNVHKKDLDKILDPL 84


>gi|318042063|ref|ZP_07974019.1| ferredoxin [Synechococcus sp. CB0101]
          Length = 113

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTGQGDTIRP 182
            +C   CV  P+++I      Y  +TPER+E I+     G G  I P
Sbjct: 55  ADCLRICVEGPVLLIWPEGIVYGSVTPERIERILRDHVVG-GTPIEP 100


>gi|222529288|ref|YP_002573170.1| hypothetical protein Athe_1297 [Caldicellulosiruptor bescii DSM
           6725]
 gi|312622466|ref|YP_004024079.1| hypothetical protein Calkro_1404 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222456135|gb|ACM60397.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|312202933|gb|ADQ46260.1| hypothetical protein Calkro_1404 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 129

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G    V V   T  +  G   ++     +I ++ L       ++  +  C G C 
Sbjct: 21  FRKQQGEGIRVVVGMATCGIAAGARPVMLKFIEEIQKRNLK-----NVTVVQTGCIGLCK 75

Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171
             P+V +    K+  TY  +TPE++  ++  
Sbjct: 76  YEPIVEVYEPNKEKVTYVKMTPEKVTRVVAE 106


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score = 39.3 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG----KDTY 157
            C L  G + + E     +               ++V C G C   P+V +     +  Y
Sbjct: 12  SCGLASGADSVYEELSKVLVGDENTI-------LKKVGCIGLCSYEPLVEVEIEGKRTIY 64

Query: 158 EDLTPERLEEII 169
             +TPE  +E++
Sbjct: 65  GYMTPELAKELV 76


>gi|326531826|dbj|BAJ97917.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 402

 Score = 39.3 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            ++VC    C   G   +++    ++             +    +C G C   P V
Sbjct: 317 RIEVCMGGKCKKAGSLAVLQEFETELGMGG---------TVVGCKCLGKCGLGPNV 363


>gi|225405647|ref|ZP_03760836.1| hypothetical protein CLOSTASPAR_04868 [Clostridium asparagiforme
           DSM 15981]
 gi|225042841|gb|EEG53087.1| hypothetical protein CLOSTASPAR_04868 [Clostridium asparagiforme
           DSM 15981]
          Length = 125

 Score = 39.3 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 92  TRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
              H++V      C +  G   ++     +   +         +S  +  C G C   P+
Sbjct: 24  DHNHIRVVVGMATCGIAAGARPVLNTLAQE--VQTRGLTD--KISVTQTGCIGLCQYEPI 79

Query: 150 VMI-----GKDTYEDLTPERLEEIIDAFSTG 175
           V +      K TY  +  ++  EI++    G
Sbjct: 80  VEVMEPGKDKVTYVKMNADKAVEIVERHLIG 110


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score = 39.3 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GKD--T 156
            C +  G +K+ +   N++       +  G+     V C G C   P++       +  T
Sbjct: 9   SCGIAAGAQKVYKEIENQLKV-YGSNSPVGS-----VGCIGMCYLEPIIEFLSDDGEKYT 62

Query: 157 YEDLTPERLEEIIDAFSTGQ 176
           Y  +TP  + EI++    GQ
Sbjct: 63  YTKVTPNIVAEIVEGILEGQ 82


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score = 39.3 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRN--SDGTLSWEEVECQGACVNAPMVMIG 153
           V +C  T  +  G  +++E    +   K        +     +   C+G C     V++ 
Sbjct: 10  VHICMGTAGVASGGYEVMEAFEQEFK-KEGVPAILKERNCKVKATGCRGLCARD--VLVD 66

Query: 154 KD-------TYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGGLTSLLDN 203
                    TYE +TPE +  I+           +   + D            L D 
Sbjct: 67  IHLPGMEPITYEHVTPEMVPAIVQEHIGNGQVVEKWAAKKDYYDFYKLQKRYVLKDC 123


>gi|86609166|ref|YP_477928.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557708|gb|ABD02665.1| ferredoxin-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 149

 Score = 39.3 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV--ECQGACVNA---PMVMI--GKDT 156
           C      +  +  +++I +  L   S G+L        C  AC  A   P++++  G   
Sbjct: 48  CEKAVGLEAWDYLKSRIKELNLEIGSGGSLRVHRTKANCLRACDYAVPGPVLLVYPGGFW 107

Query: 157 YEDLTPERLEEIIDAFSTG 175
           Y  +TPE +EEI+     G
Sbjct: 108 YHSVTPEVVEEILQKHILG 126


>gi|312127641|ref|YP_003992515.1| hypothetical protein Calhy_1429 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312793479|ref|YP_004026402.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876006|ref|ZP_07735995.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311777660|gb|ADQ07146.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
 gi|311797204|gb|EFR13544.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|312180619|gb|ADQ40789.1| hypothetical protein Calkr_1282 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 129

 Score = 39.3 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
                G    V V   T  +  G   ++     +I ++ L       ++  +  C G C 
Sbjct: 21  FRKQQGEGIRVVVGMATCGIAAGARPVMLKFVEEIQKRNLK-----NVTVVQTGCIGLCK 75

Query: 146 NAPMVMI---GKD--TYEDLTPERLEEIIDA 171
             P+V +    K+  TY  +TPE++ +++  
Sbjct: 76  YEPIVEVYEPNKEKVTYVKMTPEKVLKVVAE 106


>gi|291084683|ref|ZP_06570879.1| hypothetical protein Salmonellaentericaenterica_40312 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 24

 Score = 39.3 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 150 VMIGKDTYEDLTPERLEEIIDAFS 173
           +MI +DT+  LTPE + E+++ + 
Sbjct: 1   MMIDEDTHSHLTPEAIPELLERYK 24


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           RAHV VCG T C      K+I+    ++ +  L +     +   +  C G C   P+V++
Sbjct: 5   RAHVLVCGGTGCASSDSFKMIDKFEEELKKVELEK----EIKVVKTGCFGLCEAGPIVIV 60

Query: 153 --GKDTYEDLTPERLEEI 168
             G   Y  +  E +E I
Sbjct: 61  YPGGVFYSQVKLEDVERI 78


>gi|154249676|ref|YP_001410501.1| ferredoxin-like protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153612|gb|ABS60844.1| ferredoxin-like protein [Fervidobacterium nodosum Rt17-B1]
          Length = 126

 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 85  FQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
            ++   G R  + V   T  +  G +  ++     ++        D  ++  +  C G C
Sbjct: 21  IKMRESGKRGKIIVAMGTCGIAAGAKDTLKAIVEYMN----EMKID-DIAVVQSGCMGLC 75

Query: 145 VNAPMVMIGKD-----TYEDLTPERLEEIIDA 171
              P + +  +      Y  +TPE  + I+ +
Sbjct: 76  EVEPTIEVSLEGQEPVIYGHVTPENAKRIVQS 107


>gi|298705132|emb|CBJ28575.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 429

 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V +C    CM +G           +         +G +  + V C G C   P V +  
Sbjct: 192 RVYICTNRWCMEKGSAA-------TLGSFVG-LAPEGEVLVQGVNCLGRCNKGPNVRVRQ 243

Query: 153 ---GKDTYEDL-TPERLEEIIDAF 172
                  +  +   ER+ +I+  +
Sbjct: 244 ETGNWLEFNRIENVERVYKILRDY 267


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 130 DGTLSWEEVECQGACVNAPMVMI---GK--DTYEDLTPERLEEIIDAFST 174
           D  +      C G C   P+V I         Y+  T +++ +I+D +  
Sbjct: 55  DRNIRLRSTGCLGFCEMEPLVEIYRKNGPRIIYKKATEDKIRDIVDGYRE 104


>gi|302815787|ref|XP_002989574.1| hypothetical protein SELMODRAFT_447731 [Selaginella moellendorffii]
 gi|300142752|gb|EFJ09450.1| hypothetical protein SELMODRAFT_447731 [Selaginella moellendorffii]
          Length = 229

 Score = 39.3 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 89  PVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           PV  R  V+VC    C   G ++++   + KI        S  T      +C G C   P
Sbjct: 130 PVCAR--VEVCTGGKCRKAGSQQVLAAFQAKISSSSSPSLSSAT----SCKCMGMCGQGP 183

Query: 149 MVMIGKD------TYEDLTPERLEEIIDA 171
            V I          +  +  + ++ ++  
Sbjct: 184 NVRIQGAGDGAPLAFNHVGVKDVDPLLQQ 212


>gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
 gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
          Length = 538

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCE--K 111
           G +  A +E  A    +   +  E   FY +++  P   +  + V       +RG +  +
Sbjct: 45  GHLEPADVEAAAREARVPLAQAWEAVRFYPRYRTEPP-EKRFLLVDDPV---VRGRDFAR 100

Query: 112 LIEVCRN 118
           L     +
Sbjct: 101 LWAELED 107


>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
 gi|2500787|sp|Q59996|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
 gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
          Length = 404

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 7   AEEEFQPS-SFSFSEESAIWVNEVISRYPPSRCQSAVIPL--------LMRAQE----QE 53
           A E+F P+  + FS  S  W+ + I+R   ++ +   +P+        + RAQ     ++
Sbjct: 205 AVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEK 264

Query: 54  GWVSRAAIEVVANILDMAYIRVLEIAT 80
           G   +  I+ VA  L M   +V E+ T
Sbjct: 265 GHTPK--IDEVAEELGMTPEQVREVLT 289


>gi|154246274|ref|YP_001417232.1| ferredoxin, 2Fe-2S (AaFd4) [Xanthobacter autotrophicus Py2]
 gi|154160359|gb|ABS67575.1| ferredoxin, 2Fe-2S (AaFd4) [Xanthobacter autotrophicus Py2]
          Length = 117

 Score = 38.9 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 33/127 (25%)

Query: 65  ANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVC 116
           + +LD+   +V                   HV  C T          C   G   L +  
Sbjct: 7   SEVLDIP--QVY----------------THHVFCCFTQRPPQHPRGSCGANGAAPLWDRL 48

Query: 117 RNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFST 174
             K+       +    ++     C   C   P++++      Y   +PE ++EI+ +   
Sbjct: 49  AKKL-----EASGRRDIAMTSAGCLSFCQAGPIMVVYPQGIWYTPKSPEDIDEIVTSHLL 103

Query: 175 GQGDTIR 181
           G     R
Sbjct: 104 GGKPVER 110


>gi|302148781|pdb|3M7G|A Chain A, Structure Of Topoisomerase Domain Of Topoisomerase V
           Protein
          Length = 269

 Score = 38.9 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E A     +I RY  P    +  ++ +L     +  W        +A  L ++   V  
Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216


>gi|87124850|ref|ZP_01080698.1| putative ferredoxin like protein [Synechococcus sp. RS9917]
 gi|86167729|gb|EAQ68988.1| putative ferredoxin like protein [Synechococcus sp. RS9917]
          Length = 110

 Score = 38.9 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            +C   C   P+++I      Y  +TPER++ I++    G
Sbjct: 54  ADCLRVCEQGPVLLIWPDGIWYGGVTPERVQLILERHVVG 93


>gi|125592038|gb|EAZ32388.1| hypothetical protein OsJ_16597 [Oryza sativa Japonica Group]
          Length = 228

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 9/58 (15%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           G    ++VC    C  +G  +++               +   +      C G C   P
Sbjct: 29  GAAVEIRVCTNRTCARQGGREVLAALEGL---------APPRVDVASCGCLGRCGAGP 77


>gi|292493541|ref|YP_003528980.1| Fe2-S2-type ferredoxin [Nitrosococcus halophilus Nc4]
 gi|291582136|gb|ADE16593.1| Fe2-S2-type ferredoxin [Nitrosococcus halophilus Nc4]
          Length = 104

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 10/87 (11%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R HV  C          C       L    + K   K L       +      C   C  
Sbjct: 7   RYHVFFCTNQRDNGRPCCQNHDALALRNYAKEK--VKALGLAQQRQVRINTAGCLNRCAQ 64

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P ++I      Y     E ++EII+ 
Sbjct: 65  GPTIVIYPEGTWYTYANREDIDEIINE 91


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD------ 155
            C +  G +K+       + +K +  N D         C G C   P+V I +D      
Sbjct: 9   SCGIATGAKKVANRFEEILGEKNIDINVD------ITGCIGTCFLEPIVDIYEDGKGEPT 62

Query: 156 TYEDLTPERLEEIIDAFSTG 175
            Y  + P+ + EI+++   G
Sbjct: 63  RYVKVKPDDVAEIVESHIEG 82


>gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 583

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD----T 156
            C +  G  +++E  + ++  + +       +  ++  C G C   P+V +I  D    T
Sbjct: 9   SCGIAAGGNRVLEAIQEEVESRKID------VDVKKAGCIGMCYLEPIVDVIDDDGNKTT 62

Query: 157 YEDLTPERLEEIIDA 171
           Y  +TPE ++EI + 
Sbjct: 63  YVRVTPEIVKEIFEK 77


>gi|108760310|ref|YP_631137.1| ferredoxin, 2Fe-2S [Myxococcus xanthus DK 1622]
 gi|108464190|gb|ABF89375.1| ferredoxin, 2Fe-2S [Myxococcus xanthus DK 1622]
          Length = 113

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 95  HVQVCGT--------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           HV VC            C  +G E++    + ++ ++ L     G +      C   C  
Sbjct: 8   HVFVCTNRRPDGNPKGCCASKGAEEVRAAFKAELDKRGLK----GGMRANAAGCLDTCSF 63

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
              V++      Y  +  E +++I++ 
Sbjct: 64  GVAVVVYPEGTWYGGVKVEDVKDIVEQ 90


>gi|170079142|ref|YP_001735780.1| ferredoxin PetF2 [Synechococcus sp. PCC 7002]
 gi|22651984|gb|AAN03538.1|AF381035_2 ferredoxin PetF2 [Synechococcus sp. PCC 7002]
 gi|169886811|gb|ACB00525.1| ferredoxin PetF2 [Synechococcus sp. PCC 7002]
          Length = 124

 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            V +C    C  +G   ++   + +         +   +   +  C G C N P+V +  
Sbjct: 4   TVLICCHHTCPKQGSTAILAAFQAQ---------APADVEVRQAGCFGECGNGPLVRVLP 54

Query: 153 GKDTYEDLTPERLEEIIDA-FSTGQGDTIR-----PGPQIDRISS 191
            +  Y  +    +  I+       +    +       P    I++
Sbjct: 55  DEVWYAHVQQADIPAIVKQHLRQNRPVKQKLYGKFHQPNHGAIAA 99


>gi|302879930|ref|YP_003848494.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans
           ES-2]
 gi|302582719|gb|ADL56730.1| putative ferredoxin 2fe-2s protein [Gallionella capsiferriformans
           ES-2]
          Length = 103

 Score = 38.9 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 95  HVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDG-TLSWEEVECQGACVNA 147
           HV  C          C   G +K  +  +NK   K L  ++ G ++      C   C   
Sbjct: 7   HVFFCTNQREDGSDCCGNHGAQKARDYVKNK--VKELGISARGNSIRINSAGCLDRCDEG 64

Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
           P+++I      Y  +    L+EII +    G+
Sbjct: 65  PVLVIYPEGVWYTFIDESDLDEIIAEHLQHGR 96


>gi|218710611|ref|YP_002418232.1| cobalamin biosynthesis protein [Vibrio splendidus LGP32]
 gi|218323630|emb|CAV19909.1| Cobalamin biosynthesis protein [Vibrio splendidus LGP32]
          Length = 534

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQGACVNAPMV 150
           R HV +C    C   G + L    R  +        SDG   +      C G C N   +
Sbjct: 414 RHHVLLCEGGRCAKEGSKNLAHDLRQVLKALNF---SDGEQRIKISRTHCAGTCRNRAAM 470

Query: 151 MIGKDTYEDLTP 162
           +I +   E  TP
Sbjct: 471 VIYERLLEHETP 482


>gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 590

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            + +C  T  +  G +K+       I +K L           +  C+G C N  +V I  
Sbjct: 6   KILICQGTGGISAGAKKVEAEFNRIIAEKGLSATVGKRCDIVKTGCRGLCANDVLVDIVD 65

Query: 155 D----TYEDLTPERLEEIIDA 171
           D    TY+ + PE + ++++ 
Sbjct: 66  DKGCTTYDFVQPEEVAKLVEE 86


>gi|86146397|ref|ZP_01064721.1| cobalamin biosynthesis protein [Vibrio sp. MED222]
 gi|85835876|gb|EAQ54010.1| cobalamin biosynthesis protein [Vibrio sp. MED222]
          Length = 534

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG--TLSWEEVECQGACVNAPMV 150
           R HV +C    C   G + L    R  +        SDG   +      C G C N   +
Sbjct: 414 RHHVLLCEGGRCAKEGSKNLAHDLRQVLKALNF---SDGEQRIKISRTHCAGTCRNRAAM 470

Query: 151 MIGKDTYEDLTP 162
           +I +   E  TP
Sbjct: 471 VIYERLLEHETP 482


>gi|300856936|ref|YP_003781920.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM
           13528]
 gi|300437051|gb|ADK16818.1| anaerobic sulfite reductase subunit A [Clostridium ljungdahlii DSM
           13528]
          Length = 286

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 26/135 (19%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV---ANILDMAYI 73
           +F+ E    +N++  +Y   R  S +   L     +  W+     E V   A  L +   
Sbjct: 34  NFTVEELNNINKIAEKY--GRGYSGLTTRLQI---EVPWIKDEDAEKVIQEAKALGL--- 85

Query: 74  RVLEIATFYTQFQLSPVGTRAH-VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
                       +    G +   +  C  T C L G     +    ++ +K    ++   
Sbjct: 86  ------------RHGGTGQKVRPLVSCKGTVC-LHGNID-TQAICRELDRKYFGTDTPHK 131

Query: 133 LSWEEVECQGACVNA 147
                V C   C  A
Sbjct: 132 CKIGIVGCANNCGKA 146


>gi|88192676|pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
           Kandleri (61 Kda Fragment)
 gi|88192677|pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
           Kandleri (61 Kda Fragment)
          Length = 519

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E A     +I RY  P    +  ++ +L     +  W        +A  L ++   V  
Sbjct: 164 PEXAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216


>gi|282890777|ref|ZP_06299297.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499370|gb|EFB41669.1| hypothetical protein pah_c026o116 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 121

 Score = 38.9 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 93  RAHVQVCGTT----PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           + H+ +C        C      +  E  + ++  K LH +  G +   + +C   C   P
Sbjct: 20  KRHIFICCDPKKPKCCQPAEGLESWEYLKTRL--KELHLSELGGIYRSKADCLRVCKKGP 77

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA 171
           +V++      Y   TPE LE II  
Sbjct: 78  IVVVYPDGIWYHSCTPEVLERIIQE 102


>gi|302148776|pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of
           Topoisomerase V In The Presence Of Guanidium
           Hydrochloride
 gi|302148777|pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of
           Topoisomerase V In The Presence Of Guanidium
           Hydrochloride
 gi|302148778|pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
           Topoisomerase V In The Presence Of Guanidium
           Hydrochloride
 gi|302148779|pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
           Topoisomerase V In The Presence Of Guanidium
           Hydrochloride
 gi|302148780|pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
           Topoisomerase V In The Presence Of Dioxane
          Length = 380

 Score = 38.6 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E A     +I RY  P    +  ++ +L     +  W        +A  L ++   V  
Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216


>gi|126331781|ref|XP_001372368.1| PREDICTED: similar to Gamma-aminobutyric acid (GABA) A receptor,
           alpha 4 [Monodelphis domestica]
          Length = 555

 Score = 38.6 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 123 KPLHRNSDG-TLSWEEVECQGACVNAPMVMIGKDTY--EDLTPERLEEIIDAFSTGQGDT 179
           +P    S G + +     C  AC+N P      D    E L PE    I+D+   G  + 
Sbjct: 7   EPGTTMSSGVSFTLLHFLCLAACLNEPP----GDPQKEEKLRPENFTRILDSLLDGYDNR 62

Query: 180 IRPG 183
           +RPG
Sbjct: 63  LRPG 66


>gi|260436757|ref|ZP_05790727.1| ferredoxin [Synechococcus sp. WH 8109]
 gi|260414631|gb|EEX07927.1| ferredoxin [Synechococcus sp. WH 8109]
          Length = 129

 Score = 38.6 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 94  AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ +C T      C      +     +    +++ +   R  +G +   + +C   C  
Sbjct: 6   HHLLLCATATKAKCCDSALGAQTWNELKSVVRELNLENPER-PEGIVLRSKADCLRVCER 64

Query: 147 APMVMIG--KDTYEDLTPERLEEIIDAFSTGQGD 178
            P++++      Y +++P+R++ IID    GQ  
Sbjct: 65  GPILLVWPEGIWYANVSPDRIKRIIDEHIIGQQP 98


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score = 38.6 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIH------QKPLHRNSDGTLSWEEVECQGACVNAP 148
            V VCG T C+  G  K+ E  +           K     +   +   +  C G C   P
Sbjct: 25  RVLVCGGTGCLASGSGKIYEKLKELTKDHTGVEVKIGEEIAHTKV--MKSGCHGFCEMGP 82

Query: 149 MVMIG--KDTYEDLTPERLEEI 168
           +V I      Y  +  E  EEI
Sbjct: 83  LVRIEPYNYLYIKVKLEDCEEI 104


>gi|313683410|ref|YP_004061148.1| ferredoxin, 2fe-2S [Sulfuricurvum kujiense DSM 16994]
 gi|313156270|gb|ADR34948.1| ferredoxin, 2Fe-2S [Sulfuricurvum kujiense DSM 16994]
          Length = 124

 Score = 38.6 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C+    + + +     + QK L       +      C   C   P++++  G   Y  L
Sbjct: 25  SCVNPHTQDIFQHLAQTLMQKGLIAT----VQPIRTSCMNRCNVGPIMLVEPGHVMYAGL 80

Query: 161 TPERLEEIIDAFSTG 175
           T E++ EIID    G
Sbjct: 81  TKEKINEIIDRHIIG 95


>gi|262198531|ref|YP_003269740.1| Ferredoxin-like protein [Haliangium ochraceum DSM 14365]
 gi|262081878|gb|ACY17847.1| Ferredoxin-like protein [Haliangium ochraceum DSM 14365]
          Length = 130

 Score = 38.6 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 20/90 (22%)

Query: 95  HVQVCGTT--------PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGA 143
           HV VC            C  RG +++    + +   +  K         +      C   
Sbjct: 7   HVFVCINERAPGHPRGCCKSRGGDEVRTAFKRELGRLGIKD-------RVRANNAGCLDQ 59

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           C +   V+I   +  Y  +T   + E+I+ 
Sbjct: 60  CEHGVTVVIYPEQVWYGGVTESDVPELIER 89


>gi|312114322|ref|YP_004011918.1| ferredoxin [Rhodomicrobium vannielii ATCC 17100]
 gi|311219451|gb|ADP70819.1| ferredoxin [Rhodomicrobium vannielii ATCC 17100]
          Length = 121

 Score = 38.6 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C   G   LIE    K   + L    D  L+     C G C   P+V++      Y   
Sbjct: 39  SCAASGAMPLIERLSAK--IQALQ---DPELAVTVTGCLGFCQAGPVVVVYPEGIWYAPK 93

Query: 161 TPERLEEI 168
           T E ++EI
Sbjct: 94  TVEDIDEI 101


>gi|219848997|ref|YP_002463430.1| hypothetical protein Cagg_2108 [Chloroflexus aggregans DSM 9485]
 gi|219543256|gb|ACL24994.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 83

 Score = 38.6 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 16/87 (18%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQ--GA---CVNAP 148
             + +C    C  RG  +L       + Q  L          + VEC   G    C   P
Sbjct: 2   VRLYLCMGPNCRSRGAAELRMALEQALWQHGL---------LDRVECISSGCQDHCQIGP 52

Query: 149 --MVMIGKDTYEDLTPERLEEIIDAFS 173
             ++  G   +  +T +++  ++   +
Sbjct: 53  NLLLQPGGRCWHGVTLQQISALVAVLA 79


>gi|296088006|emb|CBI35289.3| unnamed protein product [Vitis vinifera]
          Length = 285

 Score = 38.6 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++VC    C  +G    ++             + D  ++ +   C G C   P  + +  
Sbjct: 78  LRVCVNRTCRRQGS---LQTLETLSGIA----SPD--VAVKSCGCLGRCGAGPNLVALPD 128

Query: 154 KDTYEDL-TPERLEEIIDAFSTG 175
                   T  R  E++ +F  G
Sbjct: 129 GVIVGHCGTAARAAEVMMSFVAG 151


>gi|325281878|ref|YP_004254420.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM
           20712]
 gi|324313687|gb|ADY34240.1| hypothetical protein Odosp_3281 [Odoribacter splanchnicus DSM
           20712]
          Length = 80

 Score = 38.6 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           +++C  + C  RG    +EV +        H  ++ + S    E    C + P++ I + 
Sbjct: 4   IKICLGSSCYSRGNNVHLEVIKKY--IAENHLEAEISFSGHLCEEL--CSSGPILRIDEK 59

Query: 156 TYEDLTPERLEEIIDA 171
            Y+++    L +I+  
Sbjct: 60  VYKEVNLSGLYKILQE 75


>gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19]
 gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri]
 gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19]
          Length = 984

 Score = 38.6 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E A     +I RY  P    +  ++ +L     +  W        +A  L ++   V  
Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216


>gi|223985318|ref|ZP_03635394.1| hypothetical protein HOLDEFILI_02700 [Holdemania filiformis DSM
           12042]
 gi|223962719|gb|EEF67155.1| hypothetical protein HOLDEFILI_02700 [Holdemania filiformis DSM
           12042]
          Length = 82

 Score = 38.6 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
             V+VC  + C ++G  +++ + +  I +K         ++ +   C   C     + + 
Sbjct: 2   VTVEVCIGSACYVKGSNEVVTILQELIKEKGWED----QVNVKGAFCMQVCTQGLGLRVN 57

Query: 154 KDTYEDLTPERLEEIIDA 171
                 +    + E+++ 
Sbjct: 58  GKQLLGVGLHNVREVLEQ 75


>gi|158339995|ref|YP_001521165.1| iron-sulfur cluster-binding protein, putative [Acaryochloris marina
           MBIC11017]
 gi|158310236|gb|ABW31851.1| iron-sulfur cluster-binding protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 295

 Score = 38.6 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 92  TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            R ++ VC ++ C   +  + +IE  +  + Q  L       ++     C   C   P+V
Sbjct: 197 KRPYLSVCRSSRCYPSQDVQPIIEALQTAVQQSGLE------VAVRTSGCLEVCAAGPVV 250

Query: 151 MIGKDT--YEDLTPERLEEIIDAF-STGQGDTIRPGPQIDRISS 191
               D   Y  +TPE    I+    + G+       P I   +S
Sbjct: 251 FYSGDRTWYTRVTPEIAHRIVQEHVAQGRPIQAHVYPPIKTQAS 294


>gi|220909413|ref|YP_002484724.1| hypothetical protein Cyan7425_4049 [Cyanothece sp. PCC 7425]
 gi|219866024|gb|ACL46363.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 88

 Score = 38.6 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           ++ ++ +C  + C   G  +++   +  +    L       +  +   C   C +  ++ 
Sbjct: 2   SKENLFLCMGSACHQLGVYEVLPRLQALLKTYKLEE----RIELKGSFCLETCSHGIVMK 57

Query: 152 IGKDTYEDLTPERLEEI 168
                + +++P+ +E +
Sbjct: 58  FRDRHFLNISPQNIETL 74


>gi|88192678|pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
 gi|88192679|pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
          Length = 519

 Score = 38.6 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  EESAIWVNEVISRY--PPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77
            E A     +I RY  P    +  ++ +L     +  W        +A  L ++   V  
Sbjct: 164 PEMAGEFERLIERYDVPIDEKEERILEIL----RENPWTPHD---EIARRLGLSVSEVEG 216


>gi|86141877|ref|ZP_01060401.1| ferredoxin-nitrite reductase [Leeuwenhoekiella blandensis MED217]
 gi|85831440|gb|EAQ49896.1| ferredoxin-nitrite reductase [Leeuwenhoekiella blandensis MED217]
          Length = 698

 Score = 38.6 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 32/160 (20%)

Query: 17  SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE-GWVSRAAIEVVANILDMAYIRV 75
            FS E A  +  +I +Y     +      L   Q      +   AI              
Sbjct: 337 DFSTEKARALAGLIKKYGGDELR------LTLRQNILLRHIPEGAIPF------------ 378

Query: 76  LEIATFYTQ-----FQLSPVGTRAHVQVCGTTP-CML--RGCEKLIEVCRNKIHQKPLHR 127
                FY+Q     F      T   +  C  T  C L       + +   + + ++    
Sbjct: 379 -----FYSQLANLGFARPGYETTTDITACPGTDTCNLGIASSTGIADKLEDVLVEEYPEY 433

Query: 128 NSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEE 167
            ++  ++ +   C  AC    M  IG       TPE+L  
Sbjct: 434 LNNKEVTIKISGCMNACGQHNMAHIGFQGMSVRTPEKLVA 473


>gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 574

 Score = 38.6 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 135 WEEVECQGACVNAPMVMIG-----KDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRI 189
             +V C G C   P V +         Y  +T +R+ E++DA   G    +RP   +   
Sbjct: 65  LRQVGCGGWCFAEPFVEVKLPGHPPIVYGWMTTDRVPELLDALRRG---DLRPDWALGVR 121

Query: 190 SSAPAGGLTSLLDNN 204
           ++    G+  L ++ 
Sbjct: 122 AAGAWHGIPPLTEHP 136


>gi|225457464|ref|XP_002265398.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 250

 Score = 38.6 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++VC    C  +G    ++             + D  ++ +   C G C   P  + +  
Sbjct: 43  LRVCVNRTCRRQGS---LQTLETLSGIA----SPD--VAVKSCGCLGRCGAGPNLVALPD 93

Query: 154 KDTYEDL-TPERLEEIIDAFSTG 175
                   T  R  E++ +F  G
Sbjct: 94  GVIVGHCGTAARAAEVMMSFVAG 116


>gi|167626932|ref|YP_001677432.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241667508|ref|ZP_04755086.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876054|ref|ZP_05248764.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|167596933|gb|ABZ86931.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|254842075|gb|EET20489.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 118

 Score = 38.6 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 95  HVQVCGTTPCMLRGCEKL----IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP-- 148
           H+ +C            +     E  + ++  + L  + +G +   +  C   C N P  
Sbjct: 20  HIFLCCDQERQKCCAGDVSLKSWEYLKKRL--QELKLSQNGHIYRSKTYCLRVCQNGPIA 77

Query: 149 MVMIGKDTYEDLTPERLEEIIDAFSTG 175
           +V      Y   TPE LE+II     G
Sbjct: 78  VVQPDNVWYHSCTPEVLEKIIQKHLIG 104


>gi|284038859|ref|YP_003388789.1| ferredoxin [Spirosoma linguale DSM 74]
 gi|283818152|gb|ADB39990.1| ferredoxin-like protein [Spirosoma linguale DSM 74]
          Length = 120

 Score = 38.6 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 12/87 (13%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + HV +C          C      +L++  +  +      R     +  +   C  AC  
Sbjct: 23  KKHVFICNNQKVAPKKSCGEAHGNELVDAFKAALA----ERGLLKEMRAQRTGCLDACAF 78

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P +++      Y ++    + EI+D+
Sbjct: 79  GPTLVVYPEGTYYGNVQLSDVAEIVDS 105


>gi|167761225|ref|ZP_02433352.1| hypothetical protein CLOSCI_03630 [Clostridium scindens ATCC 35704]
 gi|167660891|gb|EDS05021.1| hypothetical protein CLOSCI_03630 [Clostridium scindens ATCC 35704]
          Length = 126

 Score = 38.6 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 132 TLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIID-AFSTGQGDT 179
            +S     C G C   P+V +      K TY  +TPE+  E+ +     GQ  T
Sbjct: 64  KISVTPTGCIGLCQYEPIVEVLEPGKDKVTYVKMTPEKAMEVFNLHLKQGQVVT 117


>gi|163846913|ref|YP_001634957.1| hypothetical protein Caur_1340 [Chloroflexus aurantiacus J-10-fl]
 gi|222524735|ref|YP_002569206.1| hypothetical protein Chy400_1462 [Chloroflexus sp. Y-400-fl]
 gi|163668202|gb|ABY34568.1| hypothetical protein Caur_1340 [Chloroflexus aurantiacus J-10-fl]
 gi|222448614|gb|ACM52880.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 83

 Score = 38.6 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C  RG   +     + I +  L   SD  ++     CQ  C   P +++  
Sbjct: 3   RIYICLGPHCRGRGAADVHIALEDAIWRAGL---SD-QITCIAGSCQDRCTIGPNLLVYP 58

Query: 153 GKDTYEDLTPERLEEIIDAFS 173
           G   +  +TP  +  +I   +
Sbjct: 59  GGRRFHGVTPTEIPTLIAQLA 79


>gi|329905876|ref|ZP_08274259.1| putative ferredoxin [Oxalobacteraceae bacterium IMCC9480]
 gi|327547447|gb|EGF32268.1| putative ferredoxin [Oxalobacteraceae bacterium IMCC9480]
          Length = 105

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 95  HVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           HV +C          C  RG +   +  ++++  K L  N  G +   +  C   C   P
Sbjct: 10  HVFICMNKREDGRPCCGERGAQAAQKHAKSRL--KALDLNGQGKIRINQSGCLDRCEEGP 67

Query: 149 MVMI 152
           +++I
Sbjct: 68  VMVI 71


>gi|220907780|ref|YP_002483091.1| hypothetical protein Cyan7425_2372 [Cyanothece sp. PCC 7425]
 gi|219864391|gb|ACL44730.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 205

 Score = 38.6 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVM 151
             + VC  + C  +G ++  +  +  +      R     +++E   C G C  AP  M+M
Sbjct: 131 FKILVCQKSGCQKKGAKQQQQRLKTALQ----ERGLSDRVTFESTGCLGKCSMAPNTMLM 186

Query: 152 IGKDTYEDLTPERLEEII 169
            GK     ++   + ++I
Sbjct: 187 PGKKRLSGMSTGAIVDLI 204


>gi|86608806|ref|YP_477568.1| iron-sulfur cluster-binding protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557348|gb|ABD02305.1| iron-sulfur cluster-binding protein, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 289

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 92  TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            R ++ VC ++ C   R  + ++E   + +       N D  +      C   C   P+V
Sbjct: 197 KRPYLAVCRSSRCYPSRNYQPVVEALESALR----EANLD--VQVITSGCLEVCQQGPVV 250

Query: 151 MIGKDT--YEDLTPERLEEII 169
               D   Y+ +TP+   +I+
Sbjct: 251 FYSGDRTWYKRVTPQVARQIV 271


>gi|281422651|ref|ZP_06253650.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
 gi|281403321|gb|EFB34001.1| site-specific recombinase, phage integrase family [Prevotella copri
           DSM 18205]
          Length = 499

 Score = 38.6 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 19/83 (22%)

Query: 2   SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPPS-RCQSAVIPLL----------M 47
            +R    +  + +S   F  + E    +  ++ +Y    R    V P++           
Sbjct: 324 FLRHKTRDRNESASEVIFPITPE----LKAILDKYGNEPRLGRRVFPIMSDEITPEQEVW 379

Query: 48  RAQEQEGWVSRAAIEVVANILDM 70
             Q    ++ R  ++ VA++L M
Sbjct: 380 VIQRYNRYI-REHMKKVADMLGM 401


>gi|303242576|ref|ZP_07329053.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302589880|gb|EFL59651.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 83

 Score = 38.2 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN-APMVMIGK 154
           V++C  + C L+G   +I   ++         +    +  +   C   C N    V +  
Sbjct: 4   VKICIGSSCHLKGSYNVIHEFQHL----VEENSLHDKIDIKAKFCMKQCQNKGVAVEVCN 59

Query: 155 DTYEDLTPERLEE 167
             Y  L PE  EE
Sbjct: 60  KVYGIL-PENAEE 71


>gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 630

 Score = 38.2 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 98  VCGTTP-C-MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD 155
           VC     C M  G  K+ +   ++I +K L           EV C G C   P+V+I K 
Sbjct: 24  VCVGVATCSMASGALKVKDAFISEIQRKELDA------RVMEVGCMGHCYAEPLVLIKKP 77

Query: 156 -----TYEDLTPERLEEIIDAFST 174
                 Y  L  + +E +++ F  
Sbjct: 78  GFPALLYGKLDEDLVERLVEDFLA 101


>gi|239627944|ref|ZP_04670975.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518090|gb|EEQ57956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 125

 Score = 38.2 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
              V V   T  +  G   ++     +   +         +S  +  C G C   P+V +
Sbjct: 27  HTRVVVGMATCGIAAGARPVLNTLAQE--VQSRGLTD--KISVTQTGCIGLCQYEPIVEV 82

Query: 153 -----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                 K TY  + P++  E+++    G     +
Sbjct: 83  IEPGKDKITYVKMNPDKALEVMERHLIGGHPVEK 116


>gi|254458740|ref|ZP_05072164.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1]
 gi|207084506|gb|EDZ61794.1| ferredoxin, 2Fe-2S [Campylobacterales bacterium GD 1]
          Length = 124

 Score = 38.2 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 103 PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDL 160
            C+    + L +    K+ Q+ +     GT+      C   C + P++++  G   Y  L
Sbjct: 25  SCVTPQTQDLFQYLATKLMQEGIM----GTVQPIRTSCMNRCSSGPIMLVEPGHTMYAGL 80

Query: 161 TPERLEEIIDAFSTG 175
           T E++++II     G
Sbjct: 81  TKEKIDKIISEHIIG 95


>gi|212696804|ref|ZP_03304932.1| hypothetical protein ANHYDRO_01366 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676094|gb|EEB35701.1| hypothetical protein ANHYDRO_01366 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 96

 Score = 38.2 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCR-------NKIHQKPLHRNSDGTLSWEEVECQGAC--- 144
            ++VC    C + G + +            +++++  L    D  L  E + C   C   
Sbjct: 2   KIEVCAGARCTMLGSDIIFNRLSDFVEEFNDRLYKGELDV-QDIELEIEMITCNDECKKN 60

Query: 145 -VNAPMVMIGKDTYEDLTPERLEE-IIDA 171
             NAP+V++    + +   E + E I+D 
Sbjct: 61  KKNAPIVIVNGKVFTNAKTEVIMEYILDK 89


>gi|325982320|ref|YP_004294722.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212]
 gi|325531839|gb|ADZ26560.1| putative ferredoxin 2fe-2s protein [Nitrosomonas sp. AL212]
          Length = 102

 Score = 38.2 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 94  AHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA 147
            HV  C          C     ++L +  + +   K L  +    +      C   C   
Sbjct: 6   YHVFFCTNQRDGGAKCCNNFCAQELRDYAKQR--IKSLRLDGKKRIRINNAGCLDRCNEG 63

Query: 148 PMVMI--GKDTYEDLTPERLEEIIDA 171
           P+++I   +  Y  +  E ++EIID 
Sbjct: 64  PVIVIYPEETWYTYIDQEDIDEIIDE 89


>gi|323349366|gb|EGA83590.1| Thi5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 282

 Score = 38.2 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 22/61 (36%)

Query: 115 VCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFST 174
                +  K    +    L  +++ C G C    ++ I  D +    PE++ + + A   
Sbjct: 109 ELEEYLASKADQASDAKMLRIDKLACLGCCCFCTVLYICNDEFLKKNPEKVRKFLKAIKK 168

Query: 175 G 175
            
Sbjct: 169 A 169


>gi|254442661|ref|ZP_05056137.1| hypothetical protein VDG1235_895 [Verrucomicrobiae bacterium
          DG1235]
 gi|198256969|gb|EDY81277.1| hypothetical protein VDG1235_895 [Verrucomicrobiae bacterium
          DG1235]
          Length = 131

 Score = 38.2 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQE----------GWVSRAAIEVVAN 66
           FSEE A  V + + + PP +  S +   L   Q +           G +SRAAIE + +
Sbjct: 23 QFSEERAAAVLQTLEKNPPRKYASVLKQFLKLVQREVAKSTADVEHAGSISRAAIEAIQS 82

Query: 67 ILDMAYIRVLEIAT 80
           L   Y R + + T
Sbjct: 83 KLSGHYGRAINVTT 96


>gi|150391800|ref|YP_001321849.1| ferredoxin [Alkaliphilus metalliredigens QYMF]
 gi|149951662|gb|ABR50190.1| ferredoxin [Alkaliphilus metalliredigens QYMF]
          Length = 122

 Score = 38.2 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGAC 144
           +    GTR  V +     C +  G   ++     ++ ++ L       +   +  C G C
Sbjct: 21  RKEKGGTRIVVGMAT---CGIASGARPVMMALIEEVKKRNLE-----HMIVTQTGCIGVC 72

Query: 145 VNAPMVMI-----GKDTYEDLTPERLEEII 169
              P+V +      K TY D+T E+ ++II
Sbjct: 73  KYEPIVEVYREGEDKVTYVDMTVEKAQKII 102


>gi|124265502|ref|YP_001019506.1| putative ferredoxin [Methylibium petroleiphilum PM1]
 gi|124258277|gb|ABM93271.1| putative ferredoxin [Methylibium petroleiphilum PM1]
          Length = 107

 Score = 38.2 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 95  HVQVCGT-----TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           H+  C         C     E     C+++   K       G +   +  C   C   P+
Sbjct: 7   HIFFCLNKRDGEAACADHDAEAGFARCKSQ--AKAAGLMGAGKVRVNKAGCLDRCAGGPV 64

Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            ++      Y  +    ++EI+++    GQ
Sbjct: 65  AVVYPEGTWYTYVDAHDIDEIVESHLKHGQ 94


>gi|302393029|ref|YP_003828849.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
 gi|302205106|gb|ADL13784.1| ferredoxin-like protein [Acetohalobium arabaticum DSM 5501]
          Length = 121

 Score = 38.2 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 84  QFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
             +      +  V V   T  +  G  ++++V   +I ++ L    D  ++  +  C G 
Sbjct: 17  DLKTRKADGKPKVIVGMGTCGIAAGAREIMQVLLEEIDKRKL----DVVVT--QTGCIGM 70

Query: 144 CVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
           C   P+V +      + TY ++T E    II  
Sbjct: 71  CEKEPLVDVQLSGKNRITYGEVTKEAARRIISE 103


>gi|291286921|ref|YP_003503737.1| cytochrome c oxidase, subunit II [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884081|gb|ADD67781.1| cytochrome c oxidase, subunit II [Denitrovibrio acetiphilus DSM
           12809]
          Length = 402

 Score = 38.2 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 101 TTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNA---PMVMIGKDT 156
              C  L G E +    ++   ++ +    DG ++    E       A   P   I K+ 
Sbjct: 215 CIDCHSLDGTELVGPTFKDIYGRETVVVTPDGEMTVTADE--KYLETAIYDPSAEIVKN- 271

Query: 157 YEDLTP--------ERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG 195
           YED+ P        + L+ +I+ F +G     +PG +  R+ +   G
Sbjct: 272 YEDMMPPFKDEMSGDELDTVIEYFKSGGTQVEKPG-EKGRVIAENEG 317


>gi|115379420|ref|ZP_01466521.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|310822414|ref|YP_003954772.1| ferredoxin, 2fe-2S [Stigmatella aurantiaca DW4/3-1]
 gi|115363559|gb|EAU62693.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|309395486|gb|ADO72945.1| Ferredoxin, 2Fe-2S [Stigmatella aurantiaca DW4/3-1]
          Length = 116

 Score = 38.2 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 33/115 (28%)

Query: 95  HVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGA 143
           HV VC            C  +G E++    ++++     K       G +      C   
Sbjct: 8   HVFVCTNRRPDGHPKGCCATKGAEEVRAAFKSEMEKRGIK-------GQMRANAAGCIDT 60

Query: 144 CVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG-------------QGDTIRPG 183
           C     V+I      Y  +  E +  I+D    G             +G    PG
Sbjct: 61  CAMGVSVVIYPEGIWYGGVKTEDVPTIVDEHLLGGKPVERLMMPFMKKGPKPEPG 115


>gi|160936129|ref|ZP_02083502.1| hypothetical protein CLOBOL_01025 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440939|gb|EDP18663.1| hypothetical protein CLOBOL_01025 [Clostridium bolteae ATCC
           BAA-613]
          Length = 125

 Score = 38.2 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 92  TRAHVQVCGTTP-CMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
              H++V      C +  G   ++    +++ QK    N    +S  +  C G C   P+
Sbjct: 24  DHDHIRVVVGMATCGIAAGARPVLNTLADEV-QKRGLTN---KISVTQTGCIGLCQYEPI 79

Query: 150 VMI-----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           V +      K TY  +  ++  E+++    G     +
Sbjct: 80  VEVMEPGKDKITYVKMNADKALEVVERHLVGGHPVEK 116


>gi|76801202|ref|YP_326210.1| cobalamin cluster protein CbiX 2 ( ferredoxin-like iron-sulfur
           protein) [Natronomonas pharaonis DSM 2160]
 gi|76557067|emb|CAI48641.1| conserved cobalamin cluster protein CbiX 2 (probable
           ferredoxin-like iron-sulfur protein) [Natronomonas
           pharaonis DSM 2160]
          Length = 109

 Score = 38.2 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 20/90 (22%)

Query: 96  VQVCGTT------PCMLRG--CEKLIEVCRNKIHQKPLHRNSD---GTLSWEEVECQGAC 144
           V VC          C   G   E  +E     + ++      D     +     +C G C
Sbjct: 16  VFVCTNARDSEYAACADAGPGAEATVEAVTEWLRER------DVYWNGVGVSTTDCLGLC 69

Query: 145 ---VNAPMVMIGKDTYEDLTPERLEEIIDA 171
                A  +    + + D+TPE + E++  
Sbjct: 70  SEGGTALTIQPHDEWFSDVTPEDVPELLAE 99


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score = 38.2 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI---GK---D 155
            C +  G +K+ +  R  +   P         + +   C G C N P+V +         
Sbjct: 22  SCGIAAGAQKVYDAFRQALEGLPA--------ALDFSGCMGMCFNEPLVEVRSPNDGRRY 73

Query: 156 TYEDLTPERLEEII-DAFSTGQ 176
            Y  + PE +E I+ D    GQ
Sbjct: 74  IYGKVQPEWVERIVSDHIKNGQ 95


>gi|110637215|ref|YP_677422.1| 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406]
 gi|110279896|gb|ABG58082.1| possible 2Fe-2S ferredoxin [Cytophaga hutchinsonii ATCC 33406]
          Length = 84

 Score = 38.2 bits (88), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM--VMIG 153
           + +C  + C     +++ +  +     K  H   D  +   ++EC   C +AP+  V   
Sbjct: 10  IFICDGSKC--GRHKEVRKHLKEA--IKEHHL-KD-RVEIFKMECSDRCKHAPVLCVQPA 63

Query: 154 KDTYEDLTPERLEEIIDAF 172
            + Y ++T    ++II   
Sbjct: 64  NEWYSEVTLRDADKIITDL 82


>gi|221198862|ref|ZP_03571907.1| transposase Tn3 [Burkholderia multivorans CGD2M]
 gi|221205122|ref|ZP_03578138.1| transposase Tn3 [Burkholderia multivorans CGD2]
 gi|221174913|gb|EEE07344.1| transposase Tn3 [Burkholderia multivorans CGD2]
 gi|221181313|gb|EEE13715.1| transposase Tn3 [Burkholderia multivorans CGD2M]
          Length = 145

 Score = 38.2 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPL--LMR---AQEQEGWVSRA 59
           RL+E + +   F+ ++     +NE   R+   R   A + L  L       +  G + R 
Sbjct: 9   RLSEFDVE-RYFALNDSDVAAINE---RFRRDRRAGAAVQLVFLRASGHTLDHVGTLPRQ 64

Query: 60  AIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVC 99
            +  V   L +    +  + T Y +++         V  C
Sbjct: 65  LLRYVGERLGLPTPSIASLRTLYQRYKTQ---YEHQVWAC 101


>gi|307718059|ref|YP_003873591.1| hypothetical protein STHERM_c03450 [Spirochaeta thermophila DSM
           6192]
 gi|306531784|gb|ADN01318.1| hypothetical protein STHERM_c03450 [Spirochaeta thermophila DSM
           6192]
          Length = 101

 Score = 38.2 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 104 CMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLT 161
           C  RG   L    ++ +  + +    D  ++     C   C   P+V+I      Y  + 
Sbjct: 24  CARRGSLPLAGYLQSAVEDRGMG---DVVVTL--TGCMNLCEKGPVVVIQPDNLWYGGIE 78

Query: 162 -PERLEEIIDAFSTGQ 176
             E ++EI+DA   G+
Sbjct: 79  GEEDIDEILDALLEGR 94


>gi|86605795|ref|YP_474558.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86554337|gb|ABC99295.1| putative iron-sulfur cluster-binding protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 289

 Score = 37.8 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 92  TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            R ++ VC ++ C   R  + ++E  ++ +       N D  +      C   C   P+V
Sbjct: 197 KRPYLAVCRSSRCYPSRHYQPVVEALQSALR----EANLD--IQVITSGCLEVCQQGPVV 250

Query: 151 MIGKDT--YEDLTPERLEEIIDA 171
               D   Y+ +TP+   +I+  
Sbjct: 251 FYSGDRTWYKRVTPQVARQIVQE 273


>gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
 gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
          Length = 628

 Score = 37.8 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           T+  V +C  T C+  G   ++   +  + +K L       +  +E  C G C    +V+
Sbjct: 24  TKPLVAICAGTGCLTLGARLVVRAFQEYLIKKGLE----KEIEIKETGCPGFCEKGTLVV 79

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +      Y  +  + + +I++ 
Sbjct: 80  VYPRGVYYIGVHQDDVPDIVEE 101


>gi|239979268|ref|ZP_04701792.1| MarR family transcriptional regulator [Streptomyces albus J1074]
          Length = 140

 Score = 37.8 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA--IEVVANILDMAYIR 74
           + E    +  V++RY     ++A    L  AQ    G +S  A  +  +A  L      
Sbjct: 8  LTLEVVELIGAVVARYHEEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSN 67

Query: 75 VLEIA 79
          V  I 
Sbjct: 68 VTGIV 72


>gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 545

 Score = 37.8 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +   + +   T   L G +++ E    ++      R  D  ++  E    G      +++
Sbjct: 6   SHVLISIDANTL--LAGAKEVEEALIRELK----ERGLDKEIAVIETGPLGIIGKGVVMV 59

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +      Y ++  E + E+++ 
Sbjct: 60  VYPEGIYYGNVKVEDIPELVEE 81


>gi|291451146|ref|ZP_06590536.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291354095|gb|EFE80997.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 143

 Score = 37.8 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQ-EQEGWVSRAA--IEVVANILDMAYIR 74
           + E    +  V++RY     ++A    L  AQ    G +S  A  +  +A  L      
Sbjct: 11 LTLEVVELIGAVVARYHEEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSN 70

Query: 75 VLEIA 79
          V  I 
Sbjct: 71 VTGIV 75


>gi|153871803|ref|ZP_02000880.1| ferredoxin 2fe-2s protein [Beggiatoa sp. PS]
 gi|152071729|gb|EDN69118.1| ferredoxin 2fe-2s protein [Beggiatoa sp. PS]
          Length = 106

 Score = 37.8 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R HV  C          C     + + +  + +   +      DG +      C   C +
Sbjct: 7   RYHVFFCTNQRTEGQRCCQNHNAQAMRDYLKKRTK-ELGIIGRDG-VRANSAGCMDRCKD 64

Query: 147 APMVMI--GKDTYEDLTPERLEEII-DAFSTGQ 176
            P++++      Y       ++EII +    G+
Sbjct: 65  GPVMVVYPQGIWYTYKELADIDEIISEHLQNGR 97


>gi|118496732|ref|YP_897782.1| ferredoxin [Francisella tularensis subsp. novicida U112]
 gi|194324039|ref|ZP_03057814.1| hypothetical protein FTE_0407 [Francisella tularensis subsp.
           novicida FTE]
 gi|208779997|ref|ZP_03247340.1| hypothetical protein FTG_1000 [Francisella novicida FTG]
 gi|254372098|ref|ZP_04987591.1| hypothetical protein FTCG_01239 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254375245|ref|ZP_04990725.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548]
 gi|118422638|gb|ABK89028.1| ferredoxin [Francisella novicida U112]
 gi|151569829|gb|EDN35483.1| hypothetical protein FTCG_01239 [Francisella novicida GA99-3549]
 gi|151572963|gb|EDN38617.1| hypothetical protein FTDG_01437 [Francisella novicida GA99-3548]
 gi|194321936|gb|EDX19419.1| hypothetical protein FTE_0407 [Francisella tularensis subsp.
           novicida FTE]
 gi|208744001|gb|EDZ90302.1| hypothetical protein FTG_1000 [Francisella novicida FTG]
 gi|328676187|gb|AEB27057.1| Ferredoxin, 2Fe-2S [Francisella cf. novicida Fx1]
          Length = 117

 Score = 37.8 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 92  TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
            +     C       C      K  E  + ++  + L  + +G +   +  C   C N P
Sbjct: 18  QKHIFLCCDQERQKCCAGDVSLKAWEYLKKRL--QELGLSQNGHIYRTKTYCLRICQNGP 75

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           + ++      Y   TPE LEEII     G G+ ++
Sbjct: 76  IAVVHPDNVWYHSCTPEVLEEIIQKHLIG-GEIVK 109


>gi|145338641|ref|NP_188394.2| binding [Arabidopsis thaliana]
 gi|9294156|dbj|BAB02058.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642467|gb|AEE75988.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 236

 Score = 37.8 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++VC    C  +G  +++E              +   L      C G C + P  + +  
Sbjct: 21  IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTHCACLGRCGSGPNLVALPQ 71

Query: 154 KDTYED-LTPERLEEIIDAF 172
                   TP R  EI+ + 
Sbjct: 72  GLILRHCATPSRAAEILFSL 91


>gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 2707

 Score = 37.8 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 4    RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            RR  +EE++P   +F++     V +++++Y   R ++     +  A + +  VS A IE 
Sbjct: 1745 RRREDEEYRPDELAFNKSEYFKVEKLLAQYGWGRWKA-----MREASDLKESVSEADIEH 1799

Query: 64   VANIL 68
            ++  L
Sbjct: 1800 ISRTL 1804


>gi|159468552|ref|XP_001692438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278151|gb|EDP03916.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 119

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)

Query: 86  QLSPVGTRAHVQVCGTTP--CMLRGCEKLIEVCRN---KIHQKPLHRNSDGTLSWEEVEC 140
           +L+  G    +    T    C      K  +  +    ++  +             +  C
Sbjct: 9   RLATPGRHLFLCSDQTVAKCCSKADGIKSWDYLKKRCKELGLEGGEV----PFWRTKANC 64

Query: 141 QGACVNAPMVMIGKD--------TYEDLTPERLEEIIDAFSTG 175
              C   P+ ++  +         Y   TPE LE I+     G
Sbjct: 65  LRVCAMGPVAVVYPEQARACACVYYHSCTPEVLERILQEHIIG 107


>gi|324500342|gb|ADY40163.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 1811

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 4    RRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEV 63
            RR  +EE++P   +F++     V +++++Y   R ++     +  A + +  VS A IE 
Sbjct: 1709 RRREDEEYRPDELAFNKSEYFKVEKLLAQYGWGRWKA-----MREASDLKESVSEADIEH 1763

Query: 64   VANIL 68
            ++  L
Sbjct: 1764 ISRTL 1768


>gi|296114463|ref|ZP_06833116.1| hypothetical protein GXY_01746 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978819|gb|EFG85544.1| hypothetical protein GXY_01746 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 190

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%)

Query: 87  LSPVGTRAHVQVCGTTPCML-RGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
             P     H+ VC T    L  G          ++    L R  D  +   EV+C  AC 
Sbjct: 65  TRPDLRAIHLHVCVTCLRGLPVGAAPPGRALYEQM----LTRTHDTNVVVHEVKCLAACD 120

Query: 146 N---APMVMIG--KDTYEDLTPERLEEI---IDAFSTGQGDTIRP 182
               A + M G        L PE+ +++   + A++T    ++ P
Sbjct: 121 RGCTAVVAMPGKWGWLLGHLGPEKADDLMIYLAAYATSHSGSVMP 165


>gi|332642468|gb|AEE75989.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 244

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++VC    C  +G  +++E              +   L      C G C + P  + +  
Sbjct: 21  IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTHCACLGRCGSGPNLVALPQ 71

Query: 154 KDTYED-LTPERLEEIIDAF 172
                   TP R  EI+ + 
Sbjct: 72  GLILRHCATPSRAAEILFSL 91


>gi|327440532|dbj|BAK16897.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
          Length = 398

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
           H+ +C    CM  G E++ +  R++I +  L    D  +      C G C +   V+I  
Sbjct: 12  HLLICNGATCMGAGAEEVTKQIRDEIRKNRL----DEMIHTSRTRCNGRCKDK-CVVIDY 66

Query: 154 --KDTYEDLTPERLEEIIDA 171
                Y     E    I+  
Sbjct: 67  PKGTWYSVQDEETSRAIVQD 86


>gi|149195162|ref|ZP_01872253.1| ferredoxin, 2Fe-2S [Caminibacter mediatlanticus TB-2]
 gi|149134714|gb|EDM23199.1| ferredoxin, 2Fe-2S [Caminibacter mediatlanticus TB-2]
          Length = 111

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 103 PCMLRGCEKLIEVCRNK---IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTY 157
            C+  G E L+   + K   +   P       T       C   C   P++++  G   Y
Sbjct: 25  SCVRVGKEDLLPFTQQKMMELGIDP------MTNWIVPTGCLNRCNFGPVMLVEPGSYMY 78

Query: 158 EDLTPERLEEIIDA 171
             L  E++E I+  
Sbjct: 79  VGLDKEKIERILKE 92


>gi|46202422|ref|ZP_00053240.2| COG3411: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 111

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 82  YTQF---QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNS-DGTLSWEE 137
           Y  F   Q  P G   H + C    C  +G     +   N++  K    N  D  +S   
Sbjct: 8   YHAFVCTQRRPDG---HPRGC----CTSKGG---GQNLFNQLAMKVSELNLWDKGVSVAS 57

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
             C G C   P++++      Y+  T   ++EI+ +         R
Sbjct: 58  SSCLGFCKAGPLMVVYPQGIWYKTETTADIDEIVTSHFANDTPVER 103


>gi|332799827|ref|YP_004461326.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Tepidanaerobacter sp. Re1]
 gi|332697562|gb|AEE92019.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Tepidanaerobacter sp. Re1]
          Length = 124

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 16/86 (18%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKI---HQKPLHRNSDGTLSWEEVECQGACVNAP 148
           T+  V V   T  +  G   ++    +++   +   +     G        C G C   P
Sbjct: 29  TKTRVVVGMGTCGIAAGARAVMLAILDELKKRNIDDVIVTETG--------CIGLCQYEP 80

Query: 149 MVMI----GKDT-YEDLTPERLEEII 169
           +V +         Y ++TPE+  E++
Sbjct: 81  LVDVIKPDNPKVTYVNMTPEKAREVV 106


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 110 EKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEE 167
           +K+ +    +I  + L       +      C G C   P+V++      Y  +T   ++E
Sbjct: 22  DKIYDAFLKEIEAQNLKD----EVQVIHTGCFGLCAEGPIVIVYPEGAFYSKVTDSDVKE 77

Query: 168 IIDA 171
           I++ 
Sbjct: 78  IVEE 81


>gi|262196905|ref|YP_003268114.1| hypothetical protein Hoch_3721 [Haliangium ochraceum DSM 14365]
 gi|262080252|gb|ACY16221.1| hypothetical protein Hoch_3721 [Haliangium ochraceum DSM 14365]
          Length = 164

 Score = 37.8 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 21/96 (21%)

Query: 93  RAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           R  ++VC    C  LR  + + E    +I +      ++     +   C G C+  P V 
Sbjct: 2   RFEIRVCSGPYCAGLRDADAVSERFTERIAESGRQERAE----VQRWRCFGRCMLGPNVH 57

Query: 152 I---------GKDT-------YEDLTPERLEEIIDA 171
           +           D        Y  ++ + ++EI++ 
Sbjct: 58  VRDLQASAAEDGDPPRRVSALYHGVSRDDVDEILEK 93


>gi|307150744|ref|YP_003886128.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
 gi|306980972|gb|ADN12853.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
          Length = 99

 Score = 37.4 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 91  GTR-AHVQVCGTTPCMLRGCEKLIEVCR-NKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           G     V VC    C ++G  K++       +         D TL      CQG C  +P
Sbjct: 4   GEHQRCVMVCQHQSCQVQGAAKVLLAFHMADL--------PDDTL-VMPTGCQGQCSTSP 54

Query: 149 MVMI--GKDTYEDLTPERLEEIIDA-FSTGQGDTIRPGPQ 185
            V I   +  Y  +    +  I++     G+    +  P+
Sbjct: 55  TVRIIPEEIWYCRVQSTDVPLIVEQHLKGGKPVKEKLHPR 94


>gi|300866732|ref|ZP_07111414.1| putative iron-sulfur cluster-binding protein [Oscillatoria sp. PCC
           6506]
 gi|300335238|emb|CBN56574.1| putative iron-sulfur cluster-binding protein [Oscillatoria sp. PCC
           6506]
          Length = 299

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 92  TRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            R ++ VC ++ C   R  + +IE  +  + +      +   +      C   C   P+V
Sbjct: 197 KRPYISVCRSSRCHPSRNWQPIIEALQTAVKE------AGMDVYVMTSGCLEVCKMGPVV 250

Query: 151 MIGKDT--YEDLTPERLEEII 169
               D   Y  +TP   + I+
Sbjct: 251 FYSGDRTWYTRVTPAIAQRIV 271


>gi|114776823|ref|ZP_01451866.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1]
 gi|114552909|gb|EAU55340.1| Ferredoxin-like protein [Mariprofundus ferrooxydans PV-1]
          Length = 105

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 92  TRAHVQVCGTTPCMLRGCEKL--IEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
            R  +  C    C     E L  +   + ++ +  L       +      C G C   P+
Sbjct: 10  KRHAIMCC-GKSC----GENLPLLNYLKKRVAEAGLIMGDPDAVRVNRAGCLGVCCEGPI 64

Query: 150 VMI--GKDTYEDLTPERLEEIIDAFSTG 175
           +++      Y  L    ++ I++    G
Sbjct: 65  MVVHPEGVWYCHLDEAGIDRIVNEHFRG 92


>gi|262370041|ref|ZP_06063368.1| magnesium and cobalt efflux protein [Acinetobacter johnsonii
          SH046]
 gi|262315080|gb|EEY96120.1| magnesium and cobalt efflux protein [Acinetobacter johnsonii
          SH046]
          Length = 279

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
          + + +   P +R       LL   Q+   ++    + ++  +LD+   +V E+ T
Sbjct: 14 LRKWLGTAPETRD-----ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63


>gi|224064764|ref|XP_002301551.1| predicted protein [Populus trichocarpa]
 gi|222843277|gb|EEE80824.1| predicted protein [Populus trichocarpa]
          Length = 350

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGK 154
            +++C    C   G   L+E    KI  +               +C G C+  P V +  
Sbjct: 246 KIEICMGGKCRKLGAAALLEEFERKIGMESA---------VVGCKCMGKCMKGPNVRVFN 296

Query: 155 DTYED 159
            T E+
Sbjct: 297 CTVEN 301


>gi|50083671|ref|YP_045181.1| magnesium and cobalt efflux protein [Acinetobacter sp. ADP1]
 gi|49529647|emb|CAG67359.1| magnesium and cobalt efflux protein [Acinetobacter sp. ADP1]
          Length = 279

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 26 VNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
          + + +   P +R       LL   Q+   ++    + ++  +LD+   +V E+ T
Sbjct: 14 LRKWLGTAPETRD-----ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63


>gi|326791480|ref|YP_004309301.1| NADP-reducing hydrogenase subunit B [Clostridium lentocellum DSM
           5427]
 gi|326542244|gb|ADZ84103.1| NADP-reducing hydrogenase subunit B [Clostridium lentocellum DSM
           5427]
          Length = 132

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 85  FQLSPVGTRA----HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVEC 140
             L   G        ++V   T  +  G   ++     ++  + L       +   +  C
Sbjct: 21  IDLREKGDHVDQMIVIRVAMATCGIAAGARDIMNYFSEEVRARGL-----NNIVLTQSGC 75

Query: 141 QGACVNAPMVMI---GKD--TYEDLTPERLEEIIDAFSTG 175
            G C   P V I   GK+   Y D+   R  EI++    G
Sbjct: 76  MGYCYAEPTVEITIPGKEPVVYGDVNKARAAEILEKHIIG 115


>gi|90416647|ref|ZP_01224577.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207]
 gi|90331400|gb|EAS46636.1| ferredoxin 2fe-2s [marine gamma proteobacterium HTCC2207]
          Length = 124

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 93  RAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHR-NSDGTLSWEEVECQGACVNAPMV 150
           R H+ +C    C          E  + +   + L   + DG +   +VEC   C   P++
Sbjct: 20  RQHLLICTAGKCAPAEQTSDAWEYLKRR--IRELELLDVDGGVYRSKVECLRICRQGPIM 77

Query: 151 M--IGKDTYEDLTPERLEEIIDAFSTG 175
           +       Y   TPE +E I+     G
Sbjct: 78  VSYPDGTWYHSCTPEVIERILQEHVLG 104


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDTIRPGPQIDR 188
            ++  E  C G C   P++++      Y  +    + EI+ +    G+  T      + +
Sbjct: 16  EVAVVETGCHGLCALGPIMIVYPDATFYSMVQVNDIPEIVSEHLLKGRVVT----RLLYQ 71

Query: 189 ISSAPAGGLTSLLDNNSKKR 208
            + +P GG+ +L+D +  K+
Sbjct: 72  ETVSPTGGIKALIDTDFYKK 91


>gi|94967165|ref|YP_589213.1| ferredoxin-like [Candidatus Koribacter versatilis Ellin345]
 gi|94549215|gb|ABF39139.1| Ferredoxin-like protein [Candidatus Koribacter versatilis Ellin345]
          Length = 133

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 20/114 (17%)

Query: 81  FYTQFQLSPVGTRAHVQVCGT--------TPCMLRGCEKLIEVCRNKI---HQKPLHRNS 129
           F+ +    P   +  V +C            C   G  +L ++ + K+     +     +
Sbjct: 8   FFFRIGTMPKFQKH-VFICQNQRPAEHHRGSCDPGGTGELQKIFKKKLADHGIRGDQVRA 66

Query: 130 DGTLSWEEVECQGACVNAPMVMIGKDT--YEDLTPERLEEIIDAFSTGQGDTIR 181
           + +       C   C + P V++  +   Y  +    ++EII++   G     R
Sbjct: 67  NKS------GCLEQCEHGPTVVVYPEAVWYGGVQAADVDEIIESHILGGKPVER 114


>gi|308809065|ref|XP_003081842.1| kinesin-like calmodulin binding protein (ISS) [Ostreococcus tauri]
 gi|116060309|emb|CAL55645.1| kinesin-like calmodulin binding protein (ISS) [Ostreococcus tauri]
          Length = 1220

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG--WVSRAAI- 61
           R  +E     +F          + ++  YP SR  SA++  L   Q +EG  +V   A  
Sbjct: 346 RETDESITEPTFILLSYVQAKHDFLMGNYPLSRDDSALLAALQ-VQAEEGPRFVDDPAAL 404

Query: 62  -EVVANIL 68
            + +A  L
Sbjct: 405 GQTLAKYL 412


>gi|330821338|ref|YP_004350200.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3]
 gi|327373333|gb|AEA64688.1| hypothetical protein bgla_2g22540 [Burkholderia gladioli BSR3]
          Length = 210

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 17  SFSEESAIWVNEVISRYP----------PSRCQSAVIPLLMRAQEQEGWVS-RAAIEVVA 65
           +    +A  + E I R+            +  + A++  L      +G++  R A+E++A
Sbjct: 140 TLDPANAEAIRERIDRFAMTLATTPRSLKTEQRRALMQELKD----DGYLEVRRAMEIIA 195

Query: 66  NILDMAYIRVL 76
             L ++   V 
Sbjct: 196 QHLGVSRATVY 206


>gi|209525017|ref|ZP_03273561.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209494426|gb|EDZ94737.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 92

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + ++ +C  + C   G  +++   +  I +  L       +  +   C   C +  ++ 
Sbjct: 2   AKQNLYLCMGSACHQMGVYEVLPKLQELIAEYQLE----NRIELKGSFCLETCSSGIVMK 57

Query: 152 IGKDTYEDLTPERLEE 167
                + +++P+ +E+
Sbjct: 58  YQDQHFINISPKNIED 73


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGKD---TY 157
            C +  G +K+ ++  ++   K          S +E  C G C   P+V +I  +    Y
Sbjct: 11  SCGIAAGAKKVYDLFSDEAQSKA---------SVQETGCVGMCFKEPLVEVIDNEGRFIY 61

Query: 158 EDLTPERLEEIIDA 171
            D+  ++ ++II+ 
Sbjct: 62  GDVDEKKAQQIIED 75


>gi|145351791|ref|XP_001420246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580480|gb|ABO98539.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1109

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEG 54
           R A+E    ++F          + ++  YP SR  +A++  L   Q +EG
Sbjct: 272 RDADETIDETTFVLLSYVQAKHDFMMGNYPISRDDAALLAALQ-VQAEEG 320


>gi|325106379|ref|YP_004276033.1| hypothetical protein Pedsa_3682 [Pedobacter saltans DSM 12145]
 gi|324975227|gb|ADY54211.1| hypothetical protein Pedsa_3682 [Pedobacter saltans DSM 12145]
          Length = 101

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
             + +C  + C  RG ++  +  ++ +    L       +    +EC   C  AP++
Sbjct: 23  HVIYICTGSKCSKRGGKECYKTLKSFLKDSKLRD----KIELVRIECTDRCKFAPVL 75


>gi|229494111|ref|ZP_04387874.1| putative cobalamin [Rhodococcus erythropolis SK121]
 gi|229318473|gb|EEN84331.1| putative cobalamin [Rhodococcus erythropolis SK121]
          Length = 233

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
           H+ VC    CM  G   L                  G        C   C   P+V+   
Sbjct: 151 HLLVCKGPRCMAYGAGPLHRAMSAAAKGTSAKVTGTG--------CLSPCNLGPLVIANP 202

Query: 154 -KDTYEDLTPERLEEIIDA 171
               +  +     E ++  
Sbjct: 203 GGTWFGHVDAGDAEALVAG 221


>gi|254430975|ref|ZP_05044678.1| ferredoxin [Cyanobium sp. PCC 7001]
 gi|197625428|gb|EDY37987.1| ferredoxin [Cyanobium sp. PCC 7001]
          Length = 120

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
            +C   C   P++++      Y  +TPER+E I+     G
Sbjct: 54  ADCLRICAEGPVLLVWPEGIVYGGVTPERIERIVREHVVG 93


>gi|237508186|ref|ZP_04520901.1| YheO domain protein [Burkholderia pseudomallei MSHR346]
 gi|235000391|gb|EEP49815.1| YheO domain protein [Burkholderia pseudomallei MSHR346]
          Length = 214

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63
           +E   PSS     E        ++  P +     + A++  L      EG++  R ++E 
Sbjct: 142 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 197

Query: 64  VANILDMAYIRVL 76
           VA  L ++   V 
Sbjct: 198 VAQHLGVSRATVY 210


>gi|167907944|ref|ZP_02495149.1| hypothetical protein BpseN_37301 [Burkholderia pseudomallei NCTC
           13177]
          Length = 210

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63
           +E   PSS     E        ++  P +     + A++  L      EG++  R ++E 
Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193

Query: 64  VANILDMAYIRVL 76
           VA  L ++   V 
Sbjct: 194 VAQHLGVSRATVY 206


>gi|167899628|ref|ZP_02487029.1| hypothetical protein Bpse7_38195 [Burkholderia pseudomallei 7894]
 gi|167924137|ref|ZP_02511228.1| hypothetical protein BpseBC_36603 [Burkholderia pseudomallei
           BCC215]
 gi|217422173|ref|ZP_03453676.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|217394404|gb|EEC34423.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
          Length = 210

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63
           +E   PSS     E        ++  P +     + A++  L      EG++  R ++E 
Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193

Query: 64  VANILDMAYIRVL 76
           VA  L ++   V 
Sbjct: 194 VAQHLGVSRATVY 206


>gi|134278284|ref|ZP_01764998.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|254184549|ref|ZP_04891138.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|134250068|gb|EBA50148.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|184215141|gb|EDU12122.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 214

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63
           +E   PSS     E        ++  P +     + A++  L      EG++  R ++E 
Sbjct: 142 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 197

Query: 64  VANILDMAYIRVL 76
           VA  L ++   V 
Sbjct: 198 VAQHLGVSRATVY 210


>gi|53723078|ref|YP_112063.1| hypothetical protein BPSS2061 [Burkholderia pseudomallei K96243]
 gi|167821178|ref|ZP_02452858.1| hypothetical protein Bpse9_38998 [Burkholderia pseudomallei 91]
 gi|52213492|emb|CAH39539.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 210

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPS---RCQSAVIPLLMRAQEQEGWVS-RAAIEV 63
           +E   PSS     E        ++  P +     + A++  L      EG++  R ++E 
Sbjct: 138 KESLDPSSAELLRERIDRFAVGLATTPQALRTDQRRALMQALRD----EGYLDLRRSMET 193

Query: 64  VANILDMAYIRVL 76
           VA  L ++   V 
Sbjct: 194 VAQHLGVSRATVY 206


>gi|218131555|ref|ZP_03460359.1| hypothetical protein BACEGG_03175 [Bacteroides eggerthii DSM 20697]
 gi|217986487|gb|EEC52824.1| hypothetical protein BACEGG_03175 [Bacteroides eggerthii DSM 20697]
          Length = 528

 Score = 37.0 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 19/83 (22%)

Query: 2   SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPP-SRCQSAVIPLL----------M 47
            +R    E  + +S   F  + E    + E+++RY    +    V P++           
Sbjct: 353 FLRHKTRERNESASEVIFPVTPE----IQEILNRYGNVPKLGRRVFPIMSELITPEQEIW 408

Query: 48  RAQEQEGWVSRAAIEVVANILDM 70
             Q    ++ R  +  VA +LDM
Sbjct: 409 VIQRYNRYI-REHMAKVAKLLDM 430


>gi|260774106|ref|ZP_05883021.1| pseudouridylate synthase LSU rRNA-specific [Vibrio metschnikovii
           CIP 69.14]
 gi|260611067|gb|EEX36271.1| pseudouridylate synthase LSU rRNA-specific [Vibrio metschnikovii
           CIP 69.14]
          Length = 557

 Score = 37.0 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 9   EEFQPSSFSFSEES--AIWVNEVISRYPPSRCQSAVIPLLMRAQEQ 52
           + F P++F FS E+     +N+ I++   S  +SA+I  L   QEQ
Sbjct: 105 DRFTPAAF-FSAEANHIAEINQQINQLMHSEQRSALIEALQACQEQ 149


>gi|284050509|ref|ZP_06380719.1| hypothetical protein AplaP_03432 [Arthrospira platensis str.
           Paraca]
 gi|291570286|dbj|BAI92558.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 92

 Score = 37.0 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            + ++ +C  + C   G  +++   +  I +  L       +  +   C   C +  ++ 
Sbjct: 2   AKQNLYLCMGSACHQMGVYEVLPKLQELIAEYKLES----RIELKGSFCLETCSSGIVMK 57

Query: 152 IGKDTYEDLTPERLEE 167
                + +++P+ +E+
Sbjct: 58  YQDQHFINISPKNIED 73


>gi|113474666|ref|YP_720727.1| putative iron-sulfur cluster-binding protein [Trichodesmium
           erythraeum IMS101]
 gi|110165714|gb|ABG50254.1| putative iron-sulfur cluster-binding protein [Trichodesmium
           erythraeum IMS101]
          Length = 291

 Score = 37.0 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 85  FQLSPVGTRAHVQVCGTTPCM-LRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGA 143
           F  +P+  R ++ VC ++ C   R  + + E  +  +        S+  +      C   
Sbjct: 191 FNSNPL-KRPYLSVCRSSRCYPSRKWQPIFEALQTAVK------TSELDIDVITSGCLEV 243

Query: 144 CVNAPMV--MIGKDTYEDLTPERLEEIIDAFSTG 175
           C   P+V     +  Y  +T +  + I++    G
Sbjct: 244 CKMGPVVFYSADRTWYTRVTSDVAKRIVNEHLLG 277


>gi|152990003|ref|YP_001355725.1| 2Fe-2S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151421864|dbj|BAF69368.1| 2Fe-2S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 128

 Score = 37.0 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
             C   C   P++++  G   Y  L  ++++ II+    G
Sbjct: 59  TGCLNRCQLGPVMLVEPGHYMYVGLDKQKIDRIIEEHIIG 98


>gi|300866263|ref|ZP_07110974.1| putative ferredoxin [Oscillatoria sp. PCC 6506]
 gi|300335734|emb|CBN56134.1| putative ferredoxin [Oscillatoria sp. PCC 6506]
          Length = 155

 Score = 37.0 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 95  HVQVC--GTTP--CMLRGCEKLIEVCRNKIHQ----KPLHRNSDGTLSWEEVECQGACVN 146
           H+ +C   T P  C      +     + ++ +    KP            +  C   C N
Sbjct: 44  HIFICADQTVPKCCDKEASLEAWNYLKKRLQELKLDKPSGDRPSCIFR-TKANCLRVCSN 102

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+++I      Y ++TP  +E I+     G
Sbjct: 103 GPIMVIYPDGVWYRNVTPPIIERILQEHLIG 133


>gi|297830392|ref|XP_002883078.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328918|gb|EFH59337.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 236

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--MVMIG 153
           ++VC    C  +G  +++E              +   L      C G C + P  + +  
Sbjct: 21  IRVCTNRTCRRQGSFQILETLTAL---------APPELRVTPCACLGRCGSGPNLVALPQ 71

Query: 154 KDTYED-LTPERLEEIIDAF 172
                   TP R  EI+ + 
Sbjct: 72  GLILRHCATPSRAAEILFSL 91


>gi|298385934|ref|ZP_06995491.1| hypothetical protein HMPREF9007_02650 [Bacteroides sp. 1_1_14]
 gi|298261162|gb|EFI04029.1| hypothetical protein HMPREF9007_02650 [Bacteroides sp. 1_1_14]
          Length = 499

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 2   SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPP----SRCQSAVI-PLL------M 47
            +R    E  + +S   F  + E    + E+++RY       R    ++  LL       
Sbjct: 324 FLRHKTRERNESASEVIFPVTPE----IQEILNRYGNVPKLGRRVFPIMNELLSPEQEIW 379

Query: 48  RAQEQEGWVSRAAIEVVANILDMAYI 73
             Q    ++ R  +  VA +L+M  +
Sbjct: 380 VIQRYNRYI-REHMAKVAKLLEMEQM 404


>gi|256828646|ref|YP_003157374.1| ferredoxin, 2fe-2s [Desulfomicrobium baculatum DSM 4028]
 gi|256577822|gb|ACU88958.1| ferredoxin, 2fe-2s [Desulfomicrobium baculatum DSM 4028]
          Length = 100

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 138 VECQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176
             C   C   P++++           + E ++ I+D    G+
Sbjct: 51  TGCMKLCEKGPVMVVQPDNWWFGGVSSEEAIDAILDGIEAGE 92


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 96  VQVCGTTPCMLRGCEKLIEVCRNKI-------HQKPLHRNSDGTLSWEEVECQGACVNAP 148
           V VCG T C+  G  ++ +  +  I         +      +  +  ++  C G C   P
Sbjct: 27  VLVCGGTGCVAGGALEVYDEIKRLIEERGLLAQVELYE--EERGIGVKKSGCHGFCEAGP 84

Query: 149 MVMI--GKDTYEDLTPERLEEIID 170
           +V I   +  Y  +  E  +EI++
Sbjct: 85  LVRIEPDQFLYLKVKREDCKEIVE 108


>gi|53749491|gb|AAU90344.1| Putative TPR domain containing protein, identical [Solanum
           demissum]
          Length = 265

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--M 149
            +  +++C    C  +G    ++V        P        ++     C G C   P  +
Sbjct: 48  RKIEIRLCTERACRKQGSLDTLQVLS---GIAP------PFVAVNSCGCLGRCGAGPNVV 98

Query: 150 VMIGKDTYEDL-TPERLEE 167
           V+ G    + + TP R  E
Sbjct: 99  VLPGAVYVKHVGTPTRAAE 117


>gi|302036602|ref|YP_003796924.1| putative [2Fe-2S] ferredoxin [Candidatus Nitrospira defluvii]
 gi|300604666|emb|CBK40998.1| putative [2Fe-2S] ferredoxin [Candidatus Nitrospira defluvii]
          Length = 116

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 22/96 (22%)

Query: 90  VGTRAHVQVCGT--------TPCMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEV 138
            G + H+ VC            C   G + L    +    +++ K       G +   + 
Sbjct: 2   TGYQRHIFVCTNKREPDDPRGSCSKLGSDALHACFKQEAKRLNLK-------GVVRANKA 54

Query: 139 ECQGACVNAPMVMI--GKDTYEDLTPE-RLEEIIDA 171
            C   C   P V++      Y  +T E  ++EI++ 
Sbjct: 55  GCLDYCAQGPTVVVYPEGIWY-RVTSEADVKEIMER 89


>gi|167588401|ref|ZP_02380789.1| hypothetical protein BuboB_23869 [Burkholderia ubonensis Bu]
          Length = 210

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 38  CQSAVIPLLMRAQEQEGWVS-RAAIEVVANILDMAYIRVL 76
            + A++  L    ++EG++  R ++E +A  L ++   V 
Sbjct: 171 QRRALMQAL----KEEGYLDLRRSMETIAQHLGVSRATVY 206


>gi|156094788|ref|XP_001613430.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802304|gb|EDL43703.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1504

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 15   SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
             F+  E +   ++ +I RY        V+ ++    ++   + +  I  +A IL ++   
Sbjct: 1226 KFALIESNYNLLHRIIERY--------VLYVIELINDENRAIYKENIFRLAAILRVSPAV 1277

Query: 75   VLEIAT 80
            + EIAT
Sbjct: 1278 IDEIAT 1283


>gi|291530732|emb|CBK96317.1| Ferredoxin [Eubacterium siraeum 70/3]
          Length = 122

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             + V   T  +  G   +++   + I +K +       +   +  C G C   P+V + 
Sbjct: 28  TRIVVGMATCGIAAGARPVLKAFSDGIQEKGIK-----DVMVIQEGCIGLCQYEPVVEVI 82

Query: 153 ----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                K TY ++T E+  E+I+    G     +
Sbjct: 83  TPGKEKVTYVNMTSEKAVEVIEQHIIGGNVVTK 115


>gi|238025065|ref|YP_002909297.1| hypothetical protein bglu_2g17210 [Burkholderia glumae BGR1]
 gi|237879730|gb|ACR32062.1| Hypothetical protein bglu_2g17210 [Burkholderia glumae BGR1]
          Length = 210

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 17  SFSEESAIWVNEVISRYP----------PSRCQSAVIPLLMRAQEQEGWVS-RAAIEVVA 65
           +    +A  + E I R+            +  +  ++  L      EG++  R A+EV+A
Sbjct: 140 TLDPANADAIRERIDRFAMTLATTPRSLKTEQRRELMQAL----RAEGYLEVRRAMEVIA 195

Query: 66  NILDMAYIRVL 76
             L ++   V 
Sbjct: 196 QHLGVSRATVY 206


>gi|167772591|ref|ZP_02444644.1| hypothetical protein ANACOL_03970 [Anaerotruncus colihominis DSM
           17241]
 gi|167665069|gb|EDS09199.1| hypothetical protein ANACOL_03970 [Anaerotruncus colihominis DSM
           17241]
          Length = 123

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 133 LSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
           ++  +  C G C   P+V +      K TY  +TPE+   ++  
Sbjct: 62  VTIAQTGCIGICQYEPVVEVFEPGREKVTYVKMTPEKAARVVAE 105


>gi|166368456|ref|YP_001660729.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843]
 gi|166090829|dbj|BAG05537.1| ferredoxin-like protein [Microcystis aeruginosa NIES-843]
          Length = 151

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 92  TRAHVQVCGTT---PCMLRGCEKLIEVCRNKIH-QKPLHRNSD--GTLSWEEVECQGACV 145
            R     C  T    C      ++ +  + ++   +    ++D  G +   +  C   C 
Sbjct: 23  QRHLFLCCDQTKPKCCDKEEGLEVWDYLKKRLSELQLDRPSADRPGCIFRTKANCLRVCS 82

Query: 146 NAPMVMI--GKDTYEDLTPERLEEIIDAFSTGQ 176
             P++++      Y  +  E +E II     G 
Sbjct: 83  QGPILLVYPEGVWYGRVNKEAIERIIQEHLIGN 115


>gi|291521597|emb|CBK79890.1| Ferredoxin [Coprococcus catus GD/7]
          Length = 124

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 135 WEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
             +  C G C   P+V +      K TY  +TPE+ +E+++ 
Sbjct: 65  VTQTGCIGLCQYEPIVEVYEPGKEKVTYIKMTPEKADEVVEQ 106


>gi|77164556|ref|YP_343081.1| Fe2-S2-type ferredoxin [Nitrosococcus oceani ATCC 19707]
 gi|254434912|ref|ZP_05048420.1| hypothetical protein NOC27_1843 [Nitrosococcus oceani AFC27]
 gi|76882870|gb|ABA57551.1| Fe2-S2-type ferredoxin [Nitrosococcus oceani ATCC 19707]
 gi|207091245|gb|EDZ68516.1| hypothetical protein NOC27_1843 [Nitrosococcus oceani AFC27]
          Length = 104

 Score = 36.6 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 10/87 (11%)

Query: 93  RAHVQVCGT------TPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           R HV  C          C       +    + K   K L       +      C   C  
Sbjct: 7   RYHVFFCTNQRDDGRPCCQNHDALAIRNYAKEK--VKALGLARRRQVRINTAGCLNRCAQ 64

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P +++      Y   + + ++EII  
Sbjct: 65  GPAIVVYPEGTWYTYTSRKDIDEIITE 91


>gi|262380039|ref|ZP_06073194.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens
          SH164]
 gi|262298233|gb|EEY86147.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens
          SH164]
          Length = 279

 Score = 36.6 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           LL   Q+   ++    + ++  +LD+   +V E+ T
Sbjct: 27 ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 63


>gi|255319678|ref|ZP_05360886.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens
          SK82]
 gi|255303207|gb|EET82416.1| magnesium and cobalt efflux protein [Acinetobacter radioresistens
          SK82]
          Length = 269

 Score = 36.6 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 44 PLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIAT 80
           LL   Q+   ++    + ++  +LD+   +V E+ T
Sbjct: 17 ELLKLVQDSRRFLEPDTVAMLEGVLDLPATKVREVMT 53


>gi|194677133|ref|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos taurus]
 gi|297488689|ref|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [Bos taurus]
 gi|296474940|gb|DAA17055.1| ubiquitin specific peptidase 19 [Bos taurus]
          Length = 1238

 Score = 36.6 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G   +D
Sbjct: 806 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSDRD 863


>gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
 gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
          Length = 519

 Score = 36.6 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 99  CGTTPCMLRGCEKLIEVCRNK-----IHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG 153
           C +    + G ++++E  + +     +       +S G    E       C +A     G
Sbjct: 8   CDSVARAV-GADQVVEALQREAERRQLPLDIQRTSSRGLYWLEP---LIECDSA----QG 59

Query: 154 KDTYEDLTPERLEEIIDAFSTGQG 177
           +  +  +TP+ +  ++DA +   G
Sbjct: 60  RQGFGPVTPQDVPSLLDALAGDPG 83


>gi|254498714|ref|ZP_05111430.1| ferredoxin 2Fe-2S protein [Legionella drancourtii LLAP12]
 gi|254352042|gb|EET10861.1| ferredoxin 2Fe-2S protein [Legionella drancourtii LLAP12]
          Length = 74

 Score = 36.6 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 119 KIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           ++          G +   +  C G C + P ++I      Y   +   ++EIID+
Sbjct: 7   ELGIHG-----PGNVRVSKSGCLGRCGSGPCIVIYPEGVWYSYASFADIDEIIDS 56


>gi|289209468|ref|YP_003461534.1| ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix]
 gi|288945099|gb|ADC72798.1| putative ferredoxin 2fe-2s protein [Thioalkalivibrio sp. K90mix]
          Length = 101

 Score = 36.6 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 95  HVQVC-----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPM 149
           H+  C         C   G  ++    +++   K +  +  G +      C   C   P+
Sbjct: 7   HIFFCTNCREDGNCCEDHGATEMRAYAKDR--AKAMGIHGKGQVRVNTAGCLDRCNEGPV 64

Query: 150 VMI--GKDTYEDLTPERLEEIIDA-FSTGQ 176
            ++      Y       ++EI++     G+
Sbjct: 65  AVVYPEGVWYTYHDERDIDEILEEHLKNGR 94


>gi|319787150|ref|YP_004146625.1| Integrase catalytic region [Pseudoxanthomonas suwonensis 11-1]
 gi|317465662|gb|ADV27394.1| Integrase catalytic region [Pseudoxanthomonas suwonensis 11-1]
          Length = 466

 Score = 36.6 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 23/121 (19%)

Query: 5   RLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVV 64
           RL ++E  PS  +F+ + A    E I+R    R  S + P    +Q+     +R  +E +
Sbjct: 51  RLLQDELTPSPHAFTGDLARISEEEIAR--ALRQYSVLAPF--ISQKA----TREDVERL 102

Query: 65  ANILDMAYIRVLE------IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRN 118
           A  L++    +         A  +T     P G            C L   E +  V   
Sbjct: 103 AKELELKRAHIYGQLSKLRAAPHFTTLIRRPRG--------RGKGCSLV-SEAVDRVIEK 153

Query: 119 K 119
           +
Sbjct: 154 Q 154


>gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 545

 Score = 36.6 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
           +   + +   T   L G +++ E    ++ Q+ L    D  ++  E    G      +++
Sbjct: 6   SHVLISIDANTL--LAGAKEVEEALIRELKQRGL----DKEIAVIETGPLGIIGKGVVMV 59

Query: 152 I--GKDTYEDLTPERLEEIIDA 171
           +      Y ++  E + E+++ 
Sbjct: 60  VYPEGIYYGNVKLEDVPELVEE 81


>gi|167750763|ref|ZP_02422890.1| hypothetical protein EUBSIR_01741 [Eubacterium siraeum DSM 15702]
 gi|167656198|gb|EDS00328.1| hypothetical protein EUBSIR_01741 [Eubacterium siraeum DSM 15702]
 gi|291557756|emb|CBL34873.1| Ferredoxin [Eubacterium siraeum V10Sc8a]
          Length = 122

 Score = 36.6 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI- 152
             + V   T  +  G   +++   + I +K +       +   +  C G C   P+V + 
Sbjct: 28  TRIVVGMATCGIAAGARPVLKAFSDGIQEKGIK-----DVMVIQEGCIGLCQYEPVVEVI 82

Query: 153 ----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
                K TY ++T E+  E+I+    G     +
Sbjct: 83  TPGKEKVTYVNMTSEKAVEVIEQHIIGGNVVTK 115


>gi|282877306|ref|ZP_06286137.1| RNA polymerase sigma-70 factor [Prevotella buccalis ATCC 35310]
 gi|281300584|gb|EFA92922.1| RNA polymerase sigma-70 factor [Prevotella buccalis ATCC 35310]
          Length = 188

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 13/80 (16%)

Query: 8   EEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLM------RAQEQEGWVSRAAI 61
            EE       FSEE    +  VIS+ P  R +   +  L        AQ     +S+  +
Sbjct: 105 PEENSLEEMIFSEELKAILENVISKMPDQRRRVFTMSRLQGMTNQKIAQAL--HISKRTV 162

Query: 62  E-VVANILDMAYIRVLEIAT 80
           E  ++  L     ++  + T
Sbjct: 163 ETHISAAL----AQIRRVVT 178


>gi|226304589|ref|YP_002764547.1| hypothetical protein RER_11000 [Rhodococcus erythropolis PR4]
 gi|226183704|dbj|BAH31808.1| hypothetical protein RER_11000 [Rhodococcus erythropolis PR4]
          Length = 233

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIG- 153
           H+ VC    CM  G   L                  G        C   C   P+V+   
Sbjct: 151 HLLVCKGPRCMAYGAGPLHRAMSAAAKGTSSKVTGTG--------CLSPCNLGPLVIANP 202

Query: 154 -KDTYEDLTPERLEEIIDA 171
               +  +     E ++  
Sbjct: 203 GGTWFGHVDAGDAEALVAG 221


>gi|317152741|ref|YP_004120789.1| ferredoxin, 2Fe-2S [Desulfovibrio aespoeensis Aspo-2]
 gi|316942992|gb|ADU62043.1| ferredoxin, 2Fe-2S [Desulfovibrio aespoeensis Aspo-2]
          Length = 99

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 140 CQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176
           C   C + P++++           + E ++ I+D    G+
Sbjct: 53  CLKQCESGPIMVVQPENWWFKGVASEEAIDAILDGLEAGE 92


>gi|125550768|gb|EAY96477.1| hypothetical protein OsI_18375 [Oryza sativa Indica Group]
          Length = 416

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            ++VC    C   G   +++    K+        +DG +     +C G C   P V
Sbjct: 321 RIEVCMGGKCKKSGSLAVLQEFEKKVG-------TDGAV--VGCKCLGKCGLGPNV 367


>gi|319935286|ref|ZP_08009724.1| hypothetical protein HMPREF9488_00555 [Coprobacillus sp. 29_1]
 gi|319809694|gb|EFW06095.1| hypothetical protein HMPREF9488_00555 [Coprobacillus sp. 29_1]
          Length = 127

 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 18  FSEESAIWVNEVISRYPPSRCQSAVIPLLMRA---QEQEG-WVSRAAIEVVANILDMAYI 73
           FS+E   +  ++I+ YP        +P L +     E          ++ +   L +  +
Sbjct: 34  FSDEKVAFAEKLIASYPTK------VPALAKFCMESECFKACYPDETMDTIMEKLHLPDM 87

Query: 74  RVL---EIATFYTQ 84
           R+     I T+Y  
Sbjct: 88  RIDNIGGILTYYNH 101


>gi|242277918|ref|YP_002990047.1| ferredoxin, 2Fe-2S [Desulfovibrio salexigens DSM 2638]
 gi|242120812|gb|ACS78508.1| ferredoxin, 2Fe-2S [Desulfovibrio salexigens DSM 2638]
          Length = 100

 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 135 WEEVECQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176
                C   C N P++++           + E ++EI+D    G+
Sbjct: 48  VVATSCLKQCDNGPILVVQPENWWFKGVDSEEAIDEILDGLEDGE 92


>gi|113955308|ref|YP_730132.1| ferredoxin [Synechococcus sp. CC9311]
 gi|113882659|gb|ABI47617.1| Ferredoxin [Synechococcus sp. CC9311]
          Length = 111

 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
           V+C   C   P++++      Y  +TPER+  I+  
Sbjct: 57  VDCLRICDQGPILLVWPDGTWYRGVTPERISSILQR 92


>gi|317969176|ref|ZP_07970566.1| ferredoxin [Synechococcus sp. CB0205]
          Length = 117

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 138 VECQGACVNAPMVMIG--KDTYEDLTPERLEEIIDAFSTG 175
            +C   CV  P+++I      Y  +T ER+E I+     G
Sbjct: 59  ADCLRICVEGPVLLIWPEGIVYGGVTAERVERILKEHVIG 98


>gi|304310519|ref|YP_003810117.1| putative metal ion transporter [gamma proteobacterium HdN1]
 gi|301796252|emb|CBL44460.1| putative metal ion transporter [gamma proteobacterium HdN1]
          Length = 279

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 35 PSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIA 79
            + +S ++ +L  AQE  G +   A  ++   + ++ ++V EI 
Sbjct: 25 EPQDKSELLEMLHSAQE-NGLIDPEATNIIHGAMQVSEMQVWEIM 68


>gi|116073143|ref|ZP_01470405.1| putative ferredoxin like protein [Synechococcus sp. RS9916]
 gi|116068448|gb|EAU74200.1| putative ferredoxin like protein [Synechococcus sp. RS9916]
          Length = 136

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEII 169
           V+C   C   P+++I      Y  ++PER++ I+
Sbjct: 63  VDCLRVCEQGPVLLIWPDGIWYGGVSPERMDIIL 96


>gi|194221326|ref|XP_001498305.2| PREDICTED: similar to ubiquitin specific peptidase 19 isoform 1
           [Equus caballus]
          Length = 1237

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G  ++D
Sbjct: 805 SRLTYARLAQLLEGYARFSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 862


>gi|33861699|ref|NP_893260.1| hypothetical protein PMM1143 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640067|emb|CAE19602.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 109

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 138 VECQGACVNAPMVMI--GKDTYEDLTPERLEEI 168
           V+C   C N P+++I      YE ++PE++ EI
Sbjct: 54  VDCLRICKNGPILLIWPDGIWYEKVSPEKVSEI 86


>gi|301770391|ref|XP_002920596.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like
           [Ailuropoda melanoleuca]
          Length = 1222

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G  ++D
Sbjct: 790 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 847


>gi|281338356|gb|EFB13940.1| hypothetical protein PANDA_009359 [Ailuropoda melanoleuca]
          Length = 1359

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G  ++D
Sbjct: 890 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDSERD 947


>gi|303275552|ref|XP_003057070.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461422|gb|EEH58715.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R+ V+VC    C+  G   ++   +  +   P    +          C G C  A +V +
Sbjct: 236 RSSVEVCTGKACLRAGAGSVMRAVQENL--PPGWSCAGKK-------CMGMCERATVVRV 286

Query: 153 GKD 155
             D
Sbjct: 287 TSD 289


>gi|157364374|ref|YP_001471141.1| NADP-reducing hydrogenase, subunit B [Thermotoga lettingae TMO]
 gi|157314978|gb|ABV34077.1| NADP-reducing hydrogenase, subunit B [Thermotoga lettingae TMO]
          Length = 125

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 86  QLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACV 145
           QL   G R  + V   T  +  G +  ++     + +  +       ++  +  C G C 
Sbjct: 22  QLRDAGKRGKITVAMGTCGIAAGAKDTLKAIVEALDENNI-----NDIAVVQSGCMGLCE 76

Query: 146 NAPMVMIGKD-----TYEDLTPERLEEIID 170
             P V +  +      Y  +  E  + I+ 
Sbjct: 77  VEPTVEVRIEGQEPVVYGHVNSENAKRIVK 106


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
            ++     C G C   P++++      Y  +  E + EI++ 
Sbjct: 13  EVNVVRTGCFGLCALGPIMIVYPEGAFYSMVKVEDVPEIVEE 54


>gi|115461971|ref|NP_001054585.1| Os05g0137300 [Oryza sativa Japonica Group]
 gi|46485797|gb|AAS98422.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578136|dbj|BAF16499.1| Os05g0137300 [Oryza sativa Japonica Group]
 gi|215695454|dbj|BAG90615.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630119|gb|EEE62251.1| hypothetical protein OsJ_17038 [Oryza sativa Japonica Group]
          Length = 409

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
            ++VC    C   G   +++    K+        +DG +     +C G C   P V
Sbjct: 321 RIEVCMGGKCKKSGSLAVLQEFEKKVG-------TDGAV--VGCKCLGKCGLGPNV 367


>gi|160935015|ref|ZP_02082401.1| hypothetical protein CLOLEP_03891 [Clostridium leptum DSM 753]
 gi|156866468|gb|EDO59840.1| hypothetical protein CLOLEP_03891 [Clostridium leptum DSM 753]
          Length = 123

 Score = 36.3 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 132 TLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDA 171
            ++  +  C G C   P+V +      K TY  +TPE+   +++ 
Sbjct: 62  KVAVTQTGCIGICQYEPVVEVLVPGQEKVTYVKMTPEKAVRVVND 106


>gi|149919839|ref|ZP_01908315.1| hypothetical protein PPSIR1_12078 [Plesiocystis pacifica SIR-1]
 gi|149819286|gb|EDM78719.1| hypothetical protein PPSIR1_12078 [Plesiocystis pacifica SIR-1]
          Length = 121

 Score = 36.3 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 92  TRAHVQVCGTTPCMLRG-CEKLIEVCRNKIHQKPL--HRNSDGTLSWEEVECQGACVNAP 148
            R  + VC    C +    E L+E    ++ ++     R     L+     C G C   P
Sbjct: 8   KRFQILVCDGPSCGITHESETLVEHIEGRLDKEAALQGRAECAALT-----CFGRCDEGP 62

Query: 149 MVMI 152
            +MI
Sbjct: 63  NLMI 66


>gi|296281993|ref|ZP_06859991.1| RNA polymerase factor sigma-54 [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score = 36.3 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 5/36 (13%)

Query: 41  AVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
           A+I  L  A    G++    +  VA  L +    V 
Sbjct: 159 ALIDRLDMA----GYLPDP-LREVAEALGVPLAEVE 189


>gi|126696671|ref|YP_001091557.1| ferredoxin [Prochlorococcus marinus str. MIT 9301]
 gi|126543714|gb|ABO17956.1| Ferredoxin [Prochlorococcus marinus str. MIT 9301]
          Length = 116

 Score = 36.3 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 90  VGTRAHVQVCGTTP---CMLRG-CEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGAC 144
            G   H+ +C T     C      +K  E  +  + + +      +  +   + +C   C
Sbjct: 3   KGVHKHLLLCATPTKQKCFKGNEGQKAWECMKKTLKKFENDPSTKNVHILRSKADCLRVC 62

Query: 145 VNAPMVMI--GKDTYEDLTPERLEEI 168
            N P+++I      YE ++PE++ EI
Sbjct: 63  KNGPILLIWPDGIWYEKISPEKISEI 88


>gi|325860491|ref|ZP_08173602.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
 gi|325482018|gb|EGC85040.1| site-specific recombinase, phage integrase family [Prevotella
           denticola CRIS 18C-A]
          Length = 485

 Score = 36.3 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 19/83 (22%)

Query: 2   SVRRLAEEEFQPSS---FSFSEESAIWVNEVISRYPPSRCQSA-VIPLL----------M 47
            +R    +  + +S   F  + E    + +++ +Y         V P++           
Sbjct: 311 FLRHKTRDRNESASEVIFPITPE----LQKILDKYGNKPELGKRVFPIMSEFITPEKEVW 366

Query: 48  RAQEQEGWVSRAAIEVVANILDM 70
             Q    ++ R  +  +A +LDM
Sbjct: 367 VIQRYNRYI-REHMAKIAELLDM 388


>gi|268315674|ref|YP_003289393.1| alkylhydroperoxidase like protein, AhpD family [Rhodothermus
           marinus DSM 4252]
 gi|262333208|gb|ACY47005.1| alkylhydroperoxidase like protein, AhpD family [Rhodothermus
           marinus DSM 4252]
          Length = 182

 Score = 36.3 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 15  SFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIR 74
               S E+   + E   R P     + ++       E+ GW+   A++ +     +    
Sbjct: 79  GMGLSPETVDAILE--GRLPEDERLALLVEATRAVLERRGWLDEDALQKL-EARGLDRAA 135

Query: 75  VLEIA 79
           + EI 
Sbjct: 136 LYEII 140


>gi|33865231|ref|NP_896790.1| putative ferredoxin like protein [Synechococcus sp. WH 8102]
 gi|33638915|emb|CAE07212.1| putative ferredoxin like protein [Synechococcus sp. WH 8102]
          Length = 114

 Score = 36.3 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 94  AHVQVCGTTP----CMLRGCEKLIEVCR---NKIHQKPLHRNSDGTLSWEEVECQGACVN 146
            H+ +C T      C            +    ++  +   R  +G +   +V+C   C  
Sbjct: 8   HHLLLCATPTKAKCCDPNTGLATWNELKRLIKELGLENSDR-PEGVVLRSKVDCLRICDK 66

Query: 147 APMVMI--GKDTYEDLTPERLEE 167
            P++++      Y D+T E++E 
Sbjct: 67  GPILVVWPDGIWYTDVTTEKIEA 89


>gi|330505811|ref|YP_004382680.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01]
 gi|328920097|gb|AEB60928.1| hypothetical protein MDS_4897 [Pseudomonas mendocina NK-01]
          Length = 230

 Score = 36.3 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 86  QLSPVGTRA----------HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSW 135
            + PV               + +C    C  +G   L +  R ++         +G +  
Sbjct: 117 DVPPVPAHHAWSQIPPHAQRLLLCNGPRCTRKGALGLWKTLRQRLK-AAGRLECEGGVHI 175

Query: 136 EEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA-FSTGQG 177
              +CQ  C   P   +    + Y       +  ++D     G+ 
Sbjct: 176 TRSQCQFPCDLGPTASLYPQGEWYGIRDEAAVIRLVDERLVAGRA 220


>gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
 gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score = 36.3 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179
            ++  E  C G C   P++++      Y  + P  + EI+ +    G+  T
Sbjct: 16  EVAVVETGCHGLCALGPIMIVYPDATFYSMVQPGDIPEIVSEHLLKGRVVT 66


>gi|124514247|gb|EAY55761.1| probable ferredoxin [Leptospirillum rubarum]
 gi|206602859|gb|EDZ39340.1| Probable ferredoxin [Leptospirillum sp. Group II '5-way CG']
          Length = 86

 Score = 36.3 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 105 MLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTP 162
           M +G E L      + H   L    D  ++  +  C   C   PMV++      Y  +  
Sbjct: 1   MGKGNEDL--KLLTQSHIVSLGLEKDILVT--KTGCLDQCEYGPMVLLYPEGTWYSGMDE 56

Query: 163 ERLEEIIDAFSTGQGDTIR 181
           + +  +++    G+    R
Sbjct: 57  KSVRTLVEQIRDGKELLPR 75


>gi|269838920|ref|YP_003323612.1| hypothetical protein Tter_1884 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790650|gb|ACZ42790.1| hypothetical protein Tter_1884 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 170

 Score = 36.3 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
             ++PE+ E++++A   G+     P P+         GG
Sbjct: 15  GRISPEQAEQLLEALEEGERAAPTPRPEPPGFQQERIGG 53


>gi|94263849|ref|ZP_01287654.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1]
 gi|94266906|ref|ZP_01290561.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1]
 gi|93452406|gb|EAT03020.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1]
 gi|93455770|gb|EAT05941.1| ferredoxin, 2Fe-2S [delta proteobacterium MLMS-1]
          Length = 101

 Score = 36.3 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 140 CQGACVNAPMVMI---GKDTYEDLTPERLEEIIDAFSTGQ 176
           C   C + P+++I           + E ++ I+D    G+
Sbjct: 53  CLKQCDSGPIMVIQPENWWFKGVDSEEAIDAILDGLEDGE 92


>gi|294677585|ref|YP_003578200.1| hypothetical protein RCAP_rcc02049 [Rhodobacter capsulatus SB 1003]
 gi|2407198|gb|AAB70521.1| ORF378 [Rhodobacter capsulatus]
 gi|3128330|gb|AAC16182.1| hypothetical protein [Rhodobacter capsulatus SB 1003]
 gi|294476405|gb|ADE85793.1| protein of unknown function DUF1636 [Rhodobacter capsulatus SB
           1003]
          Length = 125

 Score = 36.3 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 22/89 (24%)

Query: 94  AHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT--------LSWEEVECQGACV 145
                C  T                +   +P    +           ++   VEC  AC 
Sbjct: 6   HVCTTCRGTA---------AAPLAEEAGPRPGELLAHALSALPVPEGVTVVPVECLSACT 56

Query: 146 NAPMVMIGK-----DTYEDLTPERLEEII 169
               V +         Y  L P   + I+
Sbjct: 57  QGCAVALSGPGKWSYVYGRLDPRDADTIL 85


>gi|212212920|ref|YP_002303856.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212]
 gi|212011330|gb|ACJ18711.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuG_Q212]
          Length = 132

 Score = 36.3 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 93  RAHVQVC---GTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           R H+ +C       C  +    +  +  + ++    L    +G +   +  C   C   P
Sbjct: 22  RHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICCQGP 79

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           + ++      Y   TP  +E II     G
Sbjct: 80  IAVVYPDGIWYHSCTPAVIERIIQEHFIG 108


>gi|291393659|ref|XP_002713461.1| PREDICTED: ubiquitin thioesterase 19 isoform 2 [Oryctolagus
           cuniculus]
          Length = 1360

 Score = 36.3 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G  ++D
Sbjct: 891 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDNERD 948


>gi|302340163|ref|YP_003805369.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637348|gb|ADK82775.1| NAD(P)-dependent iron-only hydrogenase iron-sulfur protein
           [Spirochaeta smaragdinae DSM 11293]
          Length = 130

 Score = 35.9 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP--- 148
               + V   T  +  G ++ ++    ++ +K         ++  +  C G C   P   
Sbjct: 28  KNIQIIVGMGTCGIAAGAKETLDAFLQELDEK--KLTDKVMVT--QTGCMGLCYVEPTVE 83

Query: 149 MVMIG--KDTYEDLTPERLEEIIDAFSTGQG 177
           ++M       Y  +  E   +I+     G+ 
Sbjct: 84  VIMPDMPDVIYGKVDAEVARKIVRKHIQGKA 114


>gi|29653927|ref|NP_819619.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493]
 gi|153209536|ref|ZP_01947432.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177']
 gi|154706703|ref|YP_001424820.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111]
 gi|161831414|ref|YP_001596517.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331]
 gi|165923931|ref|ZP_02219763.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334]
 gi|212218791|ref|YP_002305578.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154]
 gi|29541190|gb|AAO90133.1| ferredoxin, 2Fe-2s [Coxiella burnetii RSA 493]
 gi|120575329|gb|EAX31953.1| ferredoxin 2fe-2s [Coxiella burnetii 'MSU Goat Q177']
 gi|154355989|gb|ABS77451.1| ferredoxin, 2Fe-2s [Coxiella burnetii Dugway 5J108-111]
 gi|161763281|gb|ABX78923.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 331]
 gi|165916623|gb|EDR35227.1| ferredoxin 2fe-2s [Coxiella burnetii RSA 334]
 gi|212013053|gb|ACJ20433.1| ferredoxin, 2Fe-2s [Coxiella burnetii CbuK_Q154]
          Length = 132

 Score = 35.9 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 93  RAHVQVC---GTTPCMLRG-CEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAP 148
           R H+ +C       C  +    +  +  + ++    L    +G +   +  C   C   P
Sbjct: 22  RHHIFLCCDQTKPNCCPKNVGLESWDYLKRRL--DELKLTGEGGIFRTKANCLRICCQGP 79

Query: 149 MVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           + ++      Y   TP  +E II     G
Sbjct: 80  IAVVYPDGIWYHSCTPAVIERIIQEHFIG 108


>gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 572

 Score = 35.9 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI 152
           R  + VC  TPC+  G E ++   R ++        +   L      CQG C   P++ +
Sbjct: 21  RLRLMVCCGTPCVAAGAEAVMAALRERLA----SLGNPADLELVGTGCQGPCSRGPLLTM 76

Query: 153 -----GKDTYEDLTPERLEEIIDA 171
                 +  +E  TPE    I++A
Sbjct: 77  LRPGQPEQVWEKSTPELAVSILEA 100


>gi|78779623|ref|YP_397735.1| hypothetical protein PMT9312_1240 [Prochlorococcus marinus str. MIT
           9312]
 gi|78713122|gb|ABB50299.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 116

 Score = 35.9 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 93  RAHVQVCGTTP---CMLRG-CEKLIEVCRNKIHQ-KPLHRNSDGTLSWEEVECQGACVNA 147
             H+ +C T     C      +K  E  +  + + +      +  +   + +C   C N 
Sbjct: 6   HKHLLLCATPTKQKCFKSNEGQKTWESLKKTLKKFENDPSTKNFHILRSKADCLRICKNG 65

Query: 148 PMVMI--GKDTYEDLTPERLEEI 168
           P++++      YE ++PE++ EI
Sbjct: 66  PILLVWPDGIWYEKVSPEKISEI 88


>gi|291393657|ref|XP_002713460.1| PREDICTED: ubiquitin thioesterase 19 isoform 1 [Oryctolagus
           cuniculus]
          Length = 1322

 Score = 35.9 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 158 EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAG-GLTSLLDNNSKKRGKKKKD 214
             LT  RL ++++ ++       +P  Q  R++    G G T+LL  +S + G  ++D
Sbjct: 890 SRLTYARLAQLLEGYARYSVSVFQPPFQPGRMALESQGPGCTTLLSTSSLEAGDNERD 947


>gi|160902191|ref|YP_001567772.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359835|gb|ABX31449.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 124

 Score = 35.9 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 135 WEEVECQGACVNAPMVMIGK-----DTYEDLTPERLEEIID 170
             +  C G C   P V + +       Y ++T  ++++++ 
Sbjct: 62  VIKTGCLGYCYAEPTVEVNEPGKEPVLYGNVTKSKVKDLVK 102


>gi|284097317|ref|ZP_06385453.1| Sucraseferredoxin-like protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283831191|gb|EFC35165.1| Sucraseferredoxin-like protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 75

 Score = 35.9 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDA 171
             +P        ++     C G C   P V++      Y  +  E +  I+D 
Sbjct: 11  GIQPGEV----LVT--GSTCLGPCEQGPTVVVYPDGIWYSQVKEEHVPLILDE 57


>gi|167755793|ref|ZP_02427920.1| hypothetical protein CLORAM_01308 [Clostridium ramosum DSM 1402]
 gi|167704732|gb|EDS19311.1| hypothetical protein CLORAM_01308 [Clostridium ramosum DSM 1402]
          Length = 122

 Score = 35.9 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVM 151
            +  V V   T  +  G   ++      + Q+ L           +  C G C   P+V 
Sbjct: 26  QKYRVVVGMATCGIAAGARPVLNTLVETVAQEKLPAT------VLQTGCIGMCTLEPIVE 79

Query: 152 I-----GKDTYEDLTPERL----------EEIIDAFSTG 175
           +      K TY  + P +           +EIID ++ G
Sbjct: 80  VFDRDDNKTTYVLVNPAKAKEIAEKHLKHDEIIDEYTVG 118


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score = 35.9 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 12/83 (14%)

Query: 103 PCMLR-GCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV-MIGK----DT 156
            C +  G  K+  V + +I  + L       +  +   C G C   P+V +I +    +T
Sbjct: 9   SCGIAAGANKVYSVLKEQIEHRNLD------IELKSTGCIGMCYLEPIVDLIDENGHKET 62

Query: 157 YEDLTPERLEEIIDAFSTGQGDT 179
           +  +  +    I+ A +  QG++
Sbjct: 63  FVKVDGDMANAIVAAIAERQGNS 85


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score = 35.9 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 132 TLSWEEVECQGACVNAPMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
           T+  +   C G C N P+V +      Y  +    + EI+ +   G
Sbjct: 93  TVQVKRTSCHGFCENGPVVHVEPEGTFYTKVQASDVPEIVASHLVG 138


>gi|125571728|gb|EAZ13243.1| hypothetical protein OsJ_03166 [Oryza sativa Japonica Group]
          Length = 375

 Score = 35.9 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 5  RLAEEEFQPSSFSFSEESAIWVNEVIS 31
          RL EE  +  +F F++ES  W++ +IS
Sbjct: 25 RLKEEMLEDPAFEFTDESLQWIDRIIS 51


>gi|108757981|ref|YP_630941.1| ferredoxin-related protein [Myxococcus xanthus DK 1622]
 gi|108461861|gb|ABF87046.1| ferredoxin-related protein [Myxococcus xanthus DK 1622]
          Length = 114

 Score = 35.9 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 26/104 (25%)

Query: 98  VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-- 155
           +C  + C   G + +    R+ +  + L              C G C   P V++ +D  
Sbjct: 1   MCKGSSCKAGGADAVYAEARDALSGQGLVP----RCELYRGGCYGFCHMGPNVVVREDTG 56

Query: 156 --------------------TYEDLTPERLEEIIDAFSTGQGDT 179
                                Y  +T E++  ++          
Sbjct: 57  RKRDPLSPEDYQLMGWPGEVYYSAMTTEKMRRVVAEHIAKDAPV 100


>gi|110637125|ref|YP_677332.1| ferrodoxin [Cytophaga hutchinsonii ATCC 33406]
 gi|110279806|gb|ABG57992.1| ferrodoxin [Cytophaga hutchinsonii ATCC 33406]
          Length = 101

 Score = 35.5 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 93  RAHVQVCGTT------PCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
           + HV +C          C       L+E+ + +I ++ L       +  +   C   C N
Sbjct: 4   KKHVFICTNERPNGKECCGEERGMALVELFKKEIRERKLAV----DIRAQRAGCIDVCAN 59

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDA 171
            P +++      Y  + P  + EI+++
Sbjct: 60  GPALVVYPEGVFYGKVEPADVAEIVES 86


>gi|296284853|ref|ZP_06862851.1| ferredoxin, 2Fe-2S, putative [Citromicrobium bathyomarinum JL354]
          Length = 128

 Score = 35.5 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 95  HVQVC----GTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDG----TLSWEEVECQGACVN 146
           H+ +C        C     ++     + ++ +  +  + D      +   + +C   C  
Sbjct: 25  HIFLCALPEKAKCCDRAQGKESWNYLKKRLKELRIGPSKDDGQDLLVRRTKADCLQICDA 84

Query: 147 APMVMI--GKDTYEDLTPERLEEIIDAFSTG 175
            P+ ++      Y   TPE LEEII     G
Sbjct: 85  GPIALVQPDGVWYHSCTPEVLEEIIQQHLIG 115


>gi|218658335|ref|ZP_03514265.1| sulfolipid biosynthesis protein [Rhizobium etli IE4771]
          Length = 210

 Score = 35.5 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 156 TYEDLTPERLEEIIDAFSTGQGDTIRPGPQID 187
            Y DL+P + + +ID +  G+    R G ++ 
Sbjct: 77  IYGDLSPNKWDGLIDDYRAGRPVAPRAGTEVH 108


>gi|121534127|ref|ZP_01665952.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307230|gb|EAX48147.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 121

 Score = 35.5 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 91  GTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMV 150
           G    + V   T  +  G  +++    ++I ++ L       ++  +  C G C     V
Sbjct: 23  GAGTQIIVGMGTCGIAAGAREVMAAILDEIAKRKLQ-----DVTVRQTGCIGMCEKE--V 75

Query: 151 MIG-------KDTYEDLTPERLEEIIDA 171
           ++        + TY  +    + +II  
Sbjct: 76  LVDVIRPGEPRITYGKVKVADVPKIIAE 103


>gi|323484500|ref|ZP_08089866.1| hypothetical protein HMPREF9474_01617 [Clostridium symbiosum
           WAL-14163]
 gi|323692561|ref|ZP_08106794.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402278|gb|EGA94610.1| hypothetical protein HMPREF9474_01617 [Clostridium symbiosum
           WAL-14163]
 gi|323503427|gb|EGB19256.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 125

 Score = 35.1 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 131 GTLSWEEVECQGACVNAPMVMI-----GKDTYEDLTPERLEEIIDAFSTGQGDTIR 181
           G +   +  C G C   P+V +      K TY  + PE+  E+++    G     +
Sbjct: 61  GKVIVTQTGCIGLCQYEPIVEVMEPGKEKVTYIKMNPEKAAEVVERHLIGGHPVEK 116


>gi|322711618|gb|EFZ03191.1| ankyrin repeat protein [Metarhizium anisopliae ARSEF 23]
          Length = 218

 Score = 35.1 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 41  AVIPLLMR------AQEQEGWVSRAAIEVVA--NILDMAYIRVLEIATFYTQFQLSPVGT 92
           +++PLL        AQ++ G+   + +   A  N LD+    VLE   F+    +     
Sbjct: 15  SLLPLLRENPNLAAAQDEHGY---SLLHAAASYNHLDLLRALVLE---FHVDVNMKDEDD 68

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
              + V  T         +  +V   ++     H+ +DG 
Sbjct: 69  ETALFVVETL--------EAAKVLVEELGIDAHHQGADGM 100


>gi|84687977|ref|ZP_01015841.1| putative periplasmic thiol-disulphide interchange protein (DsbA
           family protein) [Maritimibacter alkaliphilus HTCC2654]
 gi|84664009|gb|EAQ10509.1| putative periplasmic thiol-disulphide interchange protein (DsbA
           family protein) [Rhodobacterales bacterium HTCC2654]
          Length = 222

 Score = 35.1 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 148 PMVMIGKDTYEDLTPERLEEIIDAFSTG 175
           P  +I  + Y ++T + L++I+D  + G
Sbjct: 195 PTFIINGEKYSNMTYDDLKKILDGLAEG 222


>gi|322692997|gb|EFY84876.1| ankyrin repeat-containing protein [Metarhizium acridum CQMa 102]
          Length = 218

 Score = 35.1 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 41  AVIPLLMR------AQEQEGWVSRAAIEVVA--NILDMAYIRVLEIATFYTQFQLSPVGT 92
           +++PLL        AQ++ G+   + +   A  N LD+    VLE   F+    +     
Sbjct: 15  SLLPLLRENPDLAAAQDEHGY---SLLHAAASYNHLDLLRALVLE---FHVDVNMKDEDN 68

Query: 93  RAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGT 132
              + V  T         +  +V   ++     H+ +DG 
Sbjct: 69  ETALFVVETL--------EAAKVLVEELGIDAHHKGADGM 100


>gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 638

 Score = 34.7 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 92  TRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEV----ECQGACVNA 147
            +  + VC  + C+  G  ++ E   + I        +D  ++   V     C G C   
Sbjct: 35  AKGEIVVCHGSGCLAAGAAQVAEALESAIAA------ADLDVAVRPVVKITGCHGFCSCG 88

Query: 148 PMVMI--GKDTYEDLTPERLEEII-DAFSTGQGDT 179
           P+V+I      Y+ + P   EEI+ ++   G+  T
Sbjct: 89  PLVVIHPEGIFYQKVQPSDAEEIVQESLINGRPVT 123


>gi|309791536|ref|ZP_07686037.1| hypothetical protein OSCT_1988 [Oscillochloris trichoides DG6]
 gi|308226425|gb|EFO80152.1| hypothetical protein OSCT_1988 [Oscillochloris trichoides DG6]
          Length = 121

 Score = 34.7 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 95  HVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMI-- 152
            + +C    C   G   ++   +  +         D +       CQ  C + P+V +  
Sbjct: 22  CLAICAGKKCAKAGSTLILHAAQTALQ----EVGLDSSTRIVLTRCQDQCEDGPVVTVVP 77

Query: 153 GKDTYEDLTPERLEEII 169
           G   Y ++  + +  I+
Sbjct: 78  GGYPYLNMRSQDMRPIV 94


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.168    0.533 

Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,984,882,781
Number of Sequences: 14124377
Number of extensions: 250963007
Number of successful extensions: 651153
Number of sequences better than 10.0: 3107
Number of HSP's better than 10.0 without gapping: 3642
Number of HSP's successfully gapped in prelim test: 1456
Number of HSP's that attempted gapping in prelim test: 640541
Number of HSP's gapped (non-prelim): 5213
length of query: 218
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 85
effective length of database: 2,964,251,489
effective search space: 251961376565
effective search space used: 251961376565
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 79 (34.7 bits)