RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780856|ref|YP_003065269.1| NADH-quinone oxidoreductase, E
subunit [Candidatus Liberibacter asiaticus str. psy62]
(218 letters)
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_2* 3iam_2* 3ias_2* (2:72-181)
Length = 110
Score = 103 bits (259), Expect = 2e-23
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
P G + H+QVC T C L G E+L + + P DG S ++VEC G+C
Sbjct: 1 FVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHT 59
Query: 147 APMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196
AP++ + + E +T RLE ++ G + +
Sbjct: 60 APVIQVNDEPYVECVTRARLEALLAGLR--AGKRLEEIELPGKCGHHVHEV 108
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin,
thiordoxin-like, oxidoreductase; NMR {Desulfovibrio
fructosovorans} (A:)
Length = 85
Score = 101 bits (253), Expect = 8e-23
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146
+ P G + + VC T C ++G +K++ + ++ DG S + + C G C
Sbjct: 1 MVPKG-KYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCAL 59
Query: 147 APMVMIGKDTYEDLTPERLEEIID 170
AP+VM+G+ Y ++TP ++++I+
Sbjct: 60 APIVMVGEKVYGNVTPGQVKKILA 83
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S]
cluster, Cys59Ser variant, electron transport; 1.05A
{Aquifex aeolicus} (A:)
Length = 110
Score = 84.6 bits (209), Expect = 9e-18
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 83 TQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQG 142
+ + C RG ++ + KI P T C
Sbjct: 2 EFKHVFVCV-QDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQL---FMTTVITPTGCMN 57
Query: 143 ACVNAPMVMIGKD--TYEDLTPERLEEIIDA 171
A + P+V++ D Y + PE ++EI++
Sbjct: 58 ASMMGPVVVVYPDGVWYGQVKPEDVDEIVEK 88
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
respiratory chain, 4Fe- 4S, cell membrane,
flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus
thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2*
(2:22-71)
Length = 50
Score = 73.8 bits (182), Expect = 2e-14
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 QSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQ 86
++A++PLL R Q++EGW+ IE +A ++ V+ +A+FY+ +Q
Sbjct: 3 RAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQ 50
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium
dependent kinase, structural genomics, structural
genomics consortium, SGC; 1.95A {Toxoplasma gondii}
(A:36-114)
Length = 79
Score = 27.9 bits (62), Expect = 1.1
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
N DG L +E+ + D ++ I+ +
Sbjct: 16 NNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSV 61
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} (B:)
Length = 233
Score = 27.2 bits (59), Expect = 1.9
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFS 173
+ + + + LTP +++ + A +
Sbjct: 209 VGICNEAGFRRLTPTEVKDYLAAIA 233
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-
tRNA ligase 1, glurs 1, structural genomics; 2.34A
{Thermotoga maritima} (A:1-96,A:253-341)
Length = 185
Score = 26.7 bits (59), Expect = 2.4
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 130 DGTLSWEEVECQG----ACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQ 185
G S E G A VN + ++G E LEE+I +FS
Sbjct: 111 HGATSVEAFRDXGYLPEALVNY-LALLGWSHPEGKELLTLEELISSFS------------ 157
Query: 186 IDRISSAPA 194
+DR+S PA
Sbjct: 158 LDRLSPNPA 166
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A (A:189-263)
Length = 75
Score = 26.2 bits (58), Expect = 3.8
Identities = 4/46 (8%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAF 172
++ +G + E++ A + + + ++L +
Sbjct: 14 QDGNGYIDENELD-------ALLKDLCEKNKQELDINNISTYKKNI 52
>1ryp_A 20S proteasome; multicatalytic proteinase, protein
degradation, antigen processing, hydrolase, protease;
1.90A {Saccharomyces cerevisiae} (A:)
Length = 243
Score = 26.1 bits (56), Expect = 4.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 149 MVMIGKDTYEDLTPERLEEIIDAFS 173
+ + KD + L+ E +EE + A +
Sbjct: 216 VGVATKDKFFTLSAENIEERLVAIA 240
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting;
NMR {Homo sapiens} (A:93-183)
Length = 91
Score = 25.6 bits (56), Expect = 5.5
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 127 RNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180
+ DGTL+ E++ + ++ I++ + TI
Sbjct: 17 FDDDGTLNREDL--SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTI 68
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide- binding,
phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo
sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A*
1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A*
3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A*
1nga_A* ... (A:251-334)
Length = 84
Score = 24.9 bits (54), Expect = 9.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 143 ACVNAPMVMIGKDTYEDLTPERLEEIID 170
A + + G D Y +T R EE+
Sbjct: 51 ASIEIDSLYEGVDFYTSITRARFEELNA 78
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,697,013
Number of extensions: 76015
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 21
Length of query: 218
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 133
Effective length of database: 2,082,624
Effective search space: 276988992
Effective search space used: 276988992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)