RPSBLAST alignment of GI: 254780856 and protein with PDBid: 3i9v
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* Length = 181
Score = 156 bits (396), Expect = 3e-39
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76
F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+
Sbjct: 2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61
Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136
+A+FY+ +Q P + H+QVC T C L G E+L + + P DG S +
Sbjct: 62 GVASFYSYYQFVPT-GKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQ 120
Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194
+VEC G+C AP++ + + Y E +T RLE ++ G+ + +
Sbjct: 121 KVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK--RLEEIELPGKCGHHVH 177