HHsearch alignment for GI: 254780858 and conserved domain: PRK11278

>PRK11278 NADH dehydrogenase I subunit F; Provisional.
Probab=100.00  E-value=0  Score=1123.93  Aligned_cols=415  Identities=41%  Similarity=0.734  Sum_probs=403.7

Q ss_pred             HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             675517876779899997799899999982-6989999999983977687571124556874235656886199985767
Q gi|254780858|r    8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE   86 (425)
Q Consensus         8 ~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E   86 (425)
T Consensus        15 ~~r~~~~~dp~~i~~Y~~~gGy~~l~kal~~m~p~evi~evk~SgLrGRGGAGFPtg~KW~~~~~~~~~~~kYvVcNadE   94 (448)
T PRK11278         15 TWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADE   94 (448)
T ss_pred             CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCC
T ss_conf             22336799987899998668799999998529999999999984887788674745313453114668996389996998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEEE
Q ss_conf             784860048999862589999999999971836389981555178999999999999868997767-6788664069974
Q gi|254780858|r   87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHH  165 (425)
Q Consensus        87 ~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i~v~~  165 (425)
T Consensus        95 gEPGtfKDR~lle~~Ph~viEGmiIaa~AigA~~~yIYiR~Ey~~~~~~l~~AI~ea~~~g~lG~nI~gsg~~~di~v~~  174 (448)
T PRK11278         95 MEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHT  174 (448)
T ss_pred             CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
T ss_conf             98443128998863956899999999999588648998265039999999999999997497776655777774579961


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCC--CEEEEE
Q ss_conf             575100110788998630899986888998622783037850002899999999996056888633898774--304764
Q gi|254780858|r  166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTKLFS  243 (425)
Q Consensus       166 g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~--Gtkl~t  243 (425)
T Consensus       175 GaGaYIcGEETALleSiEGkrg~PR~kPPfpa~~Gl~gkPT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~~~GTklfs  254 (448)
T PRK11278        175 GAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISRGKSKDAGTKLMG  254 (448)
T ss_pred             CCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf             68722536299999984489998898999875467678984345699999899999863798874688889999827998


Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf             26788787268935898799999986155678711004898524565653210024563342201103873466517994
Q gi|254780858|r  244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM  323 (425)
Q Consensus       244 vsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~  323 (425)
T Consensus       255 vSG~V~~PGvyEvp~G~tL~eli~~~~GG~~~G-~~~kav~pGG~sg~~l~~~~ld-~~ld~~sl~~~Gs~LGsG~viV~  332 (448)
T PRK11278        255 FSGRVKNPGLWELPFGTTAREILEDYAGGMRDG-LKFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAV  332 (448)
T ss_pred             ECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC-CCCEEEEECCCCCCCCCHHHHC-CCCCHHHHHHCCCCCCCEEEEEE
T ss_conf             236644684499459991999999838887899-5424997478777777988947-87786778644775344048983


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHH
Q ss_conf             286528999999999998762799885230289999999999828999899999999998622-3666776502479999
Q gi|254780858|r  324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQ  402 (425)
Q Consensus       324 de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~-~~S~C~lG~~a~~pv~  402 (425)
T Consensus       333 d~~~~~v~~~~~~~~F~~~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dl~~L~~la~~m~~g~s~C~LG~~a~~Pv~  412 (448)
T PRK11278        333 DHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQ  412 (448)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             68776999999999871568899998751719999999999984999989999999999874579610758533517999


Q ss_pred             HHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf             99863889999998651899999
Q gi|254780858|r  403 GLIKNFRPLIEERIDQYHRCNFQ  425 (425)
Q Consensus       403 s~l~~F~dEfe~hI~~~~rCp~~  425 (425)
T Consensus       413 s~l~~F~~EfeahI~~-~~~~~~  434 (448)
T PRK11278        413 SAIKYFREEFEAGIKQ-PFSNTH  434 (448)
T ss_pred             HHHHHHHHHHHHHHCC-CCCCCC
T ss_conf             9998779999998606-788765