HHsearch alignment for GI: 254780858 and conserved domain: PRK11278
>PRK11278 NADH dehydrogenase I subunit F; Provisional.
Probab=100.00 E-value=0 Score=1123.93 Aligned_cols=415 Identities=41% Similarity=0.734 Sum_probs=403.7
Q ss_pred HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 675517876779899997799899999982-6989999999983977687571124556874235656886199985767
Q gi|254780858|r 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 (425)
Q Consensus 8 ~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E 86 (425)
T Consensus 15 ~~r~~~~~dp~~i~~Y~~~gGy~~l~kal~~m~p~evi~evk~SgLrGRGGAGFPtg~KW~~~~~~~~~~~kYvVcNadE 94 (448)
T PRK11278 15 TWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADE 94 (448)
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCC
T ss_conf 22336799987899998668799999998529999999999984887788674745313453114668996389996998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEEE
Q ss_conf 784860048999862589999999999971836389981555178999999999999868997767-6788664069974
Q gi|254780858|r 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHH 165 (425)
Q Consensus 87 ~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i~v~~ 165 (425)
T Consensus 95 gEPGtfKDR~lle~~Ph~viEGmiIaa~AigA~~~yIYiR~Ey~~~~~~l~~AI~ea~~~g~lG~nI~gsg~~~di~v~~ 174 (448)
T PRK11278 95 MEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHT 174 (448)
T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
T ss_conf 98443128998863956899999999999588648998265039999999999999997497776655777774579961
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCC--CEEEEE
Q ss_conf 575100110788998630899986888998622783037850002899999999996056888633898774--304764
Q gi|254780858|r 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTKLFS 243 (425)
Q Consensus 166 g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~--Gtkl~t 243 (425)
T Consensus 175 GaGaYIcGEETALleSiEGkrg~PR~kPPfpa~~Gl~gkPT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~~~GTklfs 254 (448)
T PRK11278 175 GAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISRGKSKDAGTKLMG 254 (448)
T ss_pred CCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 68722536299999984489998898999875467678984345699999899999863798874688889999827998
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 26788787268935898799999986155678711004898524565653210024563342201103873466517994
Q gi|254780858|r 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 (425)
Q Consensus 244 vsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~ 323 (425)
T Consensus 255 vSG~V~~PGvyEvp~G~tL~eli~~~~GG~~~G-~~~kav~pGG~sg~~l~~~~ld-~~ld~~sl~~~Gs~LGsG~viV~ 332 (448)
T PRK11278 255 FSGRVKNPGLWELPFGTTAREILEDYAGGMRDG-LKFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAV 332 (448)
T ss_pred ECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC-CCCEEEEECCCCCCCCCHHHHC-CCCCHHHHHHCCCCCCCEEEEEE
T ss_conf 236644684499459991999999838887899-5424997478777777988947-87786778644775344048983
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHH
Q ss_conf 286528999999999998762799885230289999999999828999899999999998622-3666776502479999
Q gi|254780858|r 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQ 402 (425)
Q Consensus 324 de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~-~~S~C~lG~~a~~pv~ 402 (425)
T Consensus 333 d~~~~~v~~~~~~~~F~~~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dl~~L~~la~~m~~g~s~C~LG~~a~~Pv~ 412 (448)
T PRK11278 333 DHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQ 412 (448)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 68776999999999871568899998751719999999999984999989999999999874579610758533517999
Q ss_pred HHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf 99863889999998651899999
Q gi|254780858|r 403 GLIKNFRPLIEERIDQYHRCNFQ 425 (425)
Q Consensus 403 s~l~~F~dEfe~hI~~~~rCp~~ 425 (425)
T Consensus 413 s~l~~F~~EfeahI~~-~~~~~~ 434 (448)
T PRK11278 413 SAIKYFREEFEAGIKQ-PFSNTH 434 (448)
T ss_pred HHHHHHHHHHHHHHCC-CCCCCC
T ss_conf 9998779999998606-788765