HHsearch alignment for GI: 254780858 and conserved domain: PRK13596

>PRK13596 NADH dehydrogenase I subunit F; Provisional.
Probab=100.00  E-value=0  Score=1155.06  Aligned_cols=420  Identities=79%  Similarity=1.332  Sum_probs=413.5

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             62034367551787677989999779989999998269899999999839776875711245568742356568861999
Q gi|254780858|r    2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV   81 (425)
Q Consensus         2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv   81 (425)
T Consensus         1 l~~~~ri~~n~~~~~~~~l~~y~~~GGy~~l~~~~~m~p~~vi~evk~SgLrGRGGAGFPtG~KW~~~~~~~~~~~~Yvv   80 (426)
T PRK13596          1 LKDKDRIFTNLYGLQDWSLKGAKARGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV   80 (426)
T ss_pred             CCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE
T ss_conf             97213112101379999999999769999999999579999999999748888886636110247860313489962898


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf             85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r   82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD  160 (425)
Q Consensus        82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~  160 (425)
T Consensus        81 ~NadEgEPGtfKDR~ll~~~Ph~viEG~~iaa~aigA~~~~iyiR~ey~~~~~~l~~Ai~ea~~~g~LG~nilgsg~~~~  160 (426)
T PRK13596         81 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD  160 (426)
T ss_pred             EECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf             62688998640169988338188999999999983686489994524399999999999999983888765568887757


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEE
Q ss_conf             69974575100110788998630899986888998622783037850002899999999996056888633898774304
Q gi|254780858|r  161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK  240 (425)
Q Consensus       161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtk  240 (425)
T Consensus       161 i~v~~gaGaYIcGEetALl~slEG~rg~Pr~kPP~p~~~Gl~g~PT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~GTk  240 (426)
T PRK13596        161 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK  240 (426)
T ss_pred             EEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             89741687412061899999841799999999998543676799844567889998999997038999728988899817


Q ss_pred             EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf             76426788787268935898799999986155678711004898524565653210024563342201103873466517
Q gi|254780858|r  241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV  320 (425)
Q Consensus       241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~i  320 (425)
T Consensus       241 l~svsG~V~~PGvyE~p~G~~l~eli~~~~GG~~~G~~~~kav~pGG~S~~~l~~~~~~d~~ld~esl~~~Gs~LGsG~i  320 (426)
T PRK13596        241 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAGV  320 (426)
T ss_pred             EEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCEE
T ss_conf             99832663578269946887599999996388778876527998568877767888956577787889873877577501


Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             99428652899999999999876279988523028999999999982899989999999999862236667765024799
Q gi|254780858|r  321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP  400 (425)
Q Consensus       321 iV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~p  400 (425)
T Consensus       321 iV~d~~~~~v~~~~~~~~F~a~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dld~L~~l~~~m~~~s~CgLG~~a~~p  400 (426)
T PRK13596        321 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP  400 (426)
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             67489788999999999872447899998645159999999999983999989999999999855688658373210899


Q ss_pred             HHHHHHHCHHHHHHHHHHHCC
Q ss_conf             999986388999999865189
Q gi|254780858|r  401 IQGLIKNFRPLIEERIDQYHR  421 (425)
Q Consensus       401 v~s~l~~F~dEfe~hI~~~~r  421 (425)
T Consensus       401 v~S~l~~F~~Efe~~i~~~~~  421 (426)
T PRK13596        401 IQGLIRHFRPEIEERIDEYTR  421 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             999998679999999987153