HHsearch alignment for GI: 254780858 and conserved domain: PRK13596
>PRK13596 NADH dehydrogenase I subunit F; Provisional.
Probab=100.00 E-value=0 Score=1155.06 Aligned_cols=420 Identities=79% Similarity=1.332 Sum_probs=413.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 62034367551787677989999779989999998269899999999839776875711245568742356568861999
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv 81 (425)
T Consensus 1 l~~~~ri~~n~~~~~~~~l~~y~~~GGy~~l~~~~~m~p~~vi~evk~SgLrGRGGAGFPtG~KW~~~~~~~~~~~~Yvv 80 (426)
T PRK13596 1 LKDKDRIFTNLYGLQDWSLKGAKARGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 80 (426)
T ss_pred CCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE
T ss_conf 97213112101379999999999769999999999579999999999748888886636110247860313489962898
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf 85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 (425)
Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~ 160 (425)
T Consensus 81 ~NadEgEPGtfKDR~ll~~~Ph~viEG~~iaa~aigA~~~~iyiR~ey~~~~~~l~~Ai~ea~~~g~LG~nilgsg~~~~ 160 (426)
T PRK13596 81 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 160 (426)
T ss_pred EECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 62688998640169988338188999999999983686489994524399999999999999983888765568887757
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEE
Q ss_conf 69974575100110788998630899986888998622783037850002899999999996056888633898774304
Q gi|254780858|r 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 (425)
Q Consensus 161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtk 240 (425)
T Consensus 161 i~v~~gaGaYIcGEetALl~slEG~rg~Pr~kPP~p~~~Gl~g~PT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~GTk 240 (426)
T PRK13596 161 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 240 (426)
T ss_pred EEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 89741687412061899999841799999999998543676799844567889998999997038999728988899817
Q ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 76426788787268935898799999986155678711004898524565653210024563342201103873466517
Q gi|254780858|r 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 (425)
Q Consensus 241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~i 320 (425)
T Consensus 241 l~svsG~V~~PGvyE~p~G~~l~eli~~~~GG~~~G~~~~kav~pGG~S~~~l~~~~~~d~~ld~esl~~~Gs~LGsG~i 320 (426)
T PRK13596 241 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAGV 320 (426)
T ss_pred EEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCEE
T ss_conf 99832663578269946887599999996388778876527998568877767888956577787889873877577501
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99428652899999999999876279988523028999999999982899989999999999862236667765024799
Q gi|254780858|r 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 (425)
Q Consensus 321 iV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~p 400 (425)
T Consensus 321 iV~d~~~~~v~~~~~~~~F~a~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dld~L~~l~~~m~~~s~CgLG~~a~~p 400 (426)
T PRK13596 321 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 400 (426)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 67489788999999999872447899998645159999999999983999989999999999855688658373210899
Q ss_pred HHHHHHHCHHHHHHHHHHHCC
Q ss_conf 999986388999999865189
Q gi|254780858|r 401 IQGLIKNFRPLIEERIDQYHR 421 (425)
Q Consensus 401 v~s~l~~F~dEfe~hI~~~~r 421 (425)
T Consensus 401 v~S~l~~F~~Efe~~i~~~~~ 421 (426)
T PRK13596 401 IQGLIRHFRPEIEERIDEYTR 421 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998679999999987153