HHsearch alignment for GI: 254780858 and conserved domain: PTZ00304

>PTZ00304 NADH dehydrogenase (ubiquinone); Provisional.
Probab=100.00  E-value=0  Score=1155.98  Aligned_cols=422  Identities=64%  Similarity=1.155  Sum_probs=414.8

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC-CCCCEEE
Q ss_conf             620343675517876779899997799899999982698999999998397768757112455687423565-6886199
Q gi|254780858|r    2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDRPHYL   80 (425)
Q Consensus         2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~-~~~~~yv   80 (425)
T Consensus        22 l~d~drif~nlyg~~~~~l~~a~~rg~w~~tk~~~~~g~d~II~EvK~SGLRGRGGAGFPTG~KW~f~~~~~~~~kpkYl  101 (483)
T PTZ00304         22 LKDQDRIFTNLYNDFGTGIDSAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKKPDGRPSYI  101 (483)
T ss_pred             CCCCCHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf             85313233301468883645688737958799999759699999999627888887746366642534466788985389


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf             985767784860048999862589999999999971836389981555178999999999999868997767-6788664
Q gi|254780858|r   81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV  159 (425)
Q Consensus        81 v~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~  159 (425)
T Consensus       102 VcNaDEgEPGTfKDR~ile~dPH~lIEGmlIAa~AigA~~gyIYiRgEy~~~~~~L~~AI~eA~~~GlLG~nilGsg~~f  181 (483)
T PTZ00304        102 VVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYAKGYLGRNACGSGYDF  181 (483)
T ss_pred             EEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf             99488898540358999842828899999999999688869999557569999999999999987574565456888764


Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
Q ss_conf             06997457510011078899863089998688899862278303785000289999999999605688863389877430
Q gi|254780858|r  160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT  239 (425)
Q Consensus       160 ~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt  239 (425)
T Consensus       182 dI~v~~GAGAYICGEETALieSlEGkrG~PR~KPPfPa~~GL~g~PT~VNNVETlA~VP~Il~~Ga~wfas~G~~~s~GT  261 (483)
T PTZ00304        182 DLYTYRGAGAYICGEETAMISSIEGGPGKPRLKPPFPANVGLYGCPTTVTNCETVSVSPTILRRGPQWFASFGRKNNAGV  261 (483)
T ss_pred             EEEEEECCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
T ss_conf             68999668851746399999985799999999999875577579996333412387789999547399984798999981


Q ss_pred             EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf             47642678878726893589879999998615567871100489852456565321002456334220110387346651
Q gi|254780858|r  240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA  319 (425)
Q Consensus       240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~  319 (425)
T Consensus       262 KlfsvSG~V~~PGv~E~pmG~~LrelI~~~~GGv~~G~~~lkAv~pGG~S~~~lp~~~~d~~~mDfdsL~~~Gs~lGsG~  341 (483)
T PTZ00304        262 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICDNVLMDYDALKEAQTGLGTAA  341 (483)
T ss_pred             EEEEECCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
T ss_conf             26651366458805996489829999998679975873225999746866675897880766677588997277777537


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             79942865289999999999987627998852302899999999998289998999999999986223666776502479
Q gi|254780858|r  320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW  399 (425)
Q Consensus       320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~  399 (425)
T Consensus       342 vIV~d~~~~mv~~~~~~~~F~~~ESCGqCTPCReGT~wm~~il~ri~~G~g~~~did~L~~l~~~i~g~tiCaLG~aAa~  421 (483)
T PTZ00304        342 VIVMDKSTDLIAAIHRLSQFYAHESCGQCTPCREGSPWLEKMMKRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAW  421 (483)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             99986999999999999999607778899786172899999999997499988999999999964338710647766507


Q ss_pred             HHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf             999998638899999986518999
Q gi|254780858|r  400 PIQGLIKNFRPLIEERIDQYHRCN  423 (425)
Q Consensus       400 pv~s~l~~F~dEfe~hI~~~~rCp  423 (425)
T Consensus       422 Pv~s~ir~FR~e~E~~I~~~~~~~  445 (483)
T PTZ00304        422 PVQGLARHFTPLLEERIERYWEAN  445 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             899999880899999999998609