HHsearch alignment for GI: 254780858 and conserved domain: PTZ00304
>PTZ00304 NADH dehydrogenase (ubiquinone); Provisional.
Probab=100.00 E-value=0 Score=1155.98 Aligned_cols=422 Identities=64% Similarity=1.155 Sum_probs=414.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC-CCCCEEE
Q ss_conf 620343675517876779899997799899999982698999999998397768757112455687423565-6886199
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDRPHYL 80 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~-~~~~~yv 80 (425)
T Consensus 22 l~d~drif~nlyg~~~~~l~~a~~rg~w~~tk~~~~~g~d~II~EvK~SGLRGRGGAGFPTG~KW~f~~~~~~~~kpkYl 101 (483)
T PTZ00304 22 LKDQDRIFTNLYNDFGTGIDSAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKKPDGRPSYI 101 (483)
T ss_pred CCCCCHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf 85313233301468883645688737958799999759699999999627888887746366642534466788985389
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 985767784860048999862589999999999971836389981555178999999999999868997767-6788664
Q gi|254780858|r 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 (425)
Q Consensus 81 v~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~ 159 (425)
T Consensus 102 VcNaDEgEPGTfKDR~ile~dPH~lIEGmlIAa~AigA~~gyIYiRgEy~~~~~~L~~AI~eA~~~GlLG~nilGsg~~f 181 (483)
T PTZ00304 102 VVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYAKGYLGRNACGSGYDF 181 (483)
T ss_pred EEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99488898540358999842828899999999999688869999557569999999999999987574565456888764
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
Q ss_conf 06997457510011078899863089998688899862278303785000289999999999605688863389877430
Q gi|254780858|r 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 (425)
Q Consensus 160 ~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt 239 (425)
T Consensus 182 dI~v~~GAGAYICGEETALieSlEGkrG~PR~KPPfPa~~GL~g~PT~VNNVETlA~VP~Il~~Ga~wfas~G~~~s~GT 261 (483)
T PTZ00304 182 DLYTYRGAGAYICGEETAMISSIEGGPGKPRLKPPFPANVGLYGCPTTVTNCETVSVSPTILRRGPQWFASFGRKNNAGV 261 (483)
T ss_pred EEEEEECCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
T ss_conf 68999668851746399999985799999999999875577579996333412387789999547399984798999981
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf 47642678878726893589879999998615567871100489852456565321002456334220110387346651
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~ 319 (425)
T Consensus 262 KlfsvSG~V~~PGv~E~pmG~~LrelI~~~~GGv~~G~~~lkAv~pGG~S~~~lp~~~~d~~~mDfdsL~~~Gs~lGsG~ 341 (483)
T PTZ00304 262 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICDNVLMDYDALKEAQTGLGTAA 341 (483)
T ss_pred EEEEECCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
T ss_conf 26651366458805996489829999998679975873225999746866675897880766677588997277777537
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 79942865289999999999987627998852302899999999998289998999999999986223666776502479
Q gi|254780858|r 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 (425)
Q Consensus 320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~ 399 (425)
T Consensus 342 vIV~d~~~~mv~~~~~~~~F~~~ESCGqCTPCReGT~wm~~il~ri~~G~g~~~did~L~~l~~~i~g~tiCaLG~aAa~ 421 (483)
T PTZ00304 342 VIVMDKSTDLIAAIHRLSQFYAHESCGQCTPCREGSPWLEKMMKRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAW 421 (483)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 99986999999999999999607778899786172899999999997499988999999999964338710647766507
Q ss_pred HHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 999998638899999986518999
Q gi|254780858|r 400 PIQGLIKNFRPLIEERIDQYHRCN 423 (425)
Q Consensus 400 pv~s~l~~F~dEfe~hI~~~~rCp 423 (425)
T Consensus 422 Pv~s~ir~FR~e~E~~I~~~~~~~ 445 (483)
T PTZ00304 422 PVQGLARHFTPLLEERIERYWEAN 445 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999880899999999998609