HHsearch alignment for GI: 254780858 and conserved domain: TIGR01959
>TIGR01959 nuoF_fam NADH-quinone oxidoreductase, F subunit; InterPro: IPR011537 This entry describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. ; GO: 0010181 FMN binding, 0016651 oxidoreductase activity acting on NADH or NADPH, 0051287 NAD binding, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1288.94 Aligned_cols=410 Identities=63% Similarity=1.066 Sum_probs=402.3
Q ss_pred HHHHHHCC-CCCCCHHHHHHCC---CHHHHHHHHHC--CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC-CCCEE
Q ss_conf 36755178-7677989999779---98999999826--989999999983977687571124556874235656-88619
Q gi|254780858|r 7 RIFTNLYG-LQGKSLSDSMSRG---HWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-DRPHY 79 (425)
Q Consensus 7 r~~~~~~~-~~~~~l~~y~~~g---gy~~l~~~l~~--~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~-~~~~y 79 (425)
T Consensus 1 ~l~~~~~~D~~~~~L~~Y~~~gryrgY~~l~KaL~~~~~~ddii~~VK~SGLRGRGGAGFpTGlKWSFmPK~~sg~~pkY 80 (420)
T TIGR01959 1 VLTTNLDDDPESWTLEEYEKRGRYRGYDALRKALEEKMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSGPKPKY 80 (420)
T ss_pred CCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 95144324888510788963487024799999985267812588998743798788887643442233567878888536
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCC
Q ss_conf 9985767784860048999862589999999999971836389981555178999999999999868997767-678866
Q gi|254780858|r 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 (425)
Q Consensus 80 vv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~ 158 (425)
T Consensus 81 LvCNADE~EPGTcKDR~lm~~~PH~LIEGm~IaayA~ga~~gYiYiRGEf~~~~~~l~~Ai~EA~~~G~LGkNIlGsGFD 160 (420)
T TIGR01959 81 LVCNADEGEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAKRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFD 160 (420)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88727779777131489986288703057888778752531047861301678899999999999759820033788620
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCC-CCCC
Q ss_conf 406997457510011078899863089998688899862278303785000289999999999605688863389-8774
Q gi|254780858|r 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNR 237 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~-~~~~ 237 (425)
T Consensus 161 f~l~~H~GAGAYICGEETALleSLEGkrGqPRlKPPFPA~~GLYG~PT~iNNVETla~VP~I~~~G~~Wy~~~G~~~~~~ 240 (420)
T TIGR01959 161 FELFVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYSKLGKSEKSP 240 (420)
T ss_pred EEEEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 57634338885050478974531057668455221787455566788436463233345788721689998507888888
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 30476426788787268935898799999986155678711004898524565653210024563342201103873466
Q gi|254780858|r 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 (425)
Q Consensus 238 Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGs 317 (425)
T Consensus 241 GtKLfs~SGhV~kPG~yE~plG~pl~ELledyAGG~r~G~~NLKaviPGGsS~P~L~~~~~~~~~MDydsl~~~GSmLGt 320 (420)
T TIGR01959 241 GTKLFSVSGHVNKPGNYELPLGIPLRELLEDYAGGVRGGWKNLKAVIPGGSSTPVLPAEEHLDVPMDYDSLAAAGSMLGT 320 (420)
T ss_pred CCEEEEEEEEEECCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCE
T ss_conf 85487531066579447700677689999986789888725454572687677761645540246677889864411220
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCCCCCCHH
Q ss_conf 5179942865289999999999987627998852302899999999998289998999999999986223-666776502
Q gi|254780858|r 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDA 396 (425)
Q Consensus 318 g~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~-~S~C~lG~~ 396 (425)
T Consensus 321 g~~iv~D~~tc~V~~~~Rl~~Fy~hESCGqCTPCREGt~W~~~il~rie~G~G~~~Did~L~~v~~~i~GG~TiCAlgda 400 (420)
T TIGR01959 321 GAVIVMDESTCIVKAVRRLSEFYAHESCGQCTPCREGTGWLVKILERIEEGEGKKEDIDLLLSVCKQIEGGKTICALGDA 400 (420)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 32687747834889999999973025787857875762459999999971789843589999997434889333678656
Q ss_pred HHHHHHHHHHHCHHHHHHHH
Q ss_conf 47999999863889999998
Q gi|254780858|r 397 AAWPIQGLIKNFRPLIEERI 416 (425)
Q Consensus 397 a~~pv~s~l~~F~dEfe~hI 416 (425)
T Consensus 401 Aa~P~~~~ikhFR~EFe~~i 420 (420)
T TIGR01959 401 AAWPVQSAIKHFRDEFEAHI 420 (420)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 65654778887789983379