Query gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs 156 out of 1693
Neff 5.4
Searched_HMMs 39220
Date Mon May 30 01:04:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01959 nuoF_fam NADH-quinon 100.0 0 0 1288.9 31.3 410 7-416 1-420 (420)
2 PRK13596 NADH dehydrogenase I 100.0 0 0 1155.1 43.8 420 2-421 1-421 (426)
3 PTZ00304 NADH dehydrogenase (u 100.0 0 0 1156.0 42.3 422 2-423 22-445 (483)
4 COG1894 NuoF NADH:ubiquinone o 100.0 0 0 1143.0 38.6 415 1-418 5-422 (424)
5 PRK11278 NADH dehydrogenase I 100.0 0 0 1123.9 42.8 415 8-425 15-434 (448)
6 KOG2658 consensus 100.0 0 0 930.0 29.2 419 2-420 50-469 (478)
7 TIGR01945 rnfC electron transp 100.0 0 0 433.3 19.6 318 34-413 118-441 (444)
8 PRK05035 electron transport co 100.0 0 0 403.6 19.2 316 36-417 129-449 (725)
9 pfam01512 Complex1_51K Respira 100.0 0 0 346.5 13.9 149 47-218 1-149 (150)
10 COG4656 RnfC Predicted NADH:ub 100.0 0 0 330.4 22.5 330 16-415 101-433 (529)
11 PRK05352 Na(+)-translocating N 99.9 1.1E-20 2.8E-25 159.4 13.8 297 35-413 111-445 (448)
12 pfam10589 NADH_4Fe-4S NADH-ubi 99.5 5.6E-15 1.4E-19 121.0 3.3 46 330-375 1-46 (46)
13 pfam10531 SLBB SLBB domain. 98.8 6.5E-09 1.7E-13 80.1 4.6 52 241-293 1-52 (52)
14 TIGR01936 nqrA NADH:ubiquinone 97.0 0.0059 1.5E-07 39.9 8.1 230 37-337 112-357 (466)
15 COG1726 NqrA Na+-transporting 96.6 0.052 1.3E-06 33.6 10.6 203 32-296 107-312 (447)
16 TIGR03027 pepcterm_export puta 94.7 0.11 2.7E-06 31.5 5.8 80 240-326 79-163 (165)
17 TIGR03028 EpsE polysaccharide 94.3 0.08 2E-06 32.3 4.6 43 241-285 164-206 (239)
18 pfam05896 NQRA Na(+)-transloca 93.4 0.69 1.8E-05 25.9 10.8 144 35-224 110-255 (257)
19 COG1596 Wza Periplasmic protei 93.0 0.11 2.8E-06 31.3 3.4 39 240-279 125-164 (239)
20 TIGR03028 EpsE polysaccharide 91.8 0.36 9.2E-06 27.9 4.8 79 239-325 78-161 (239)
21 pfam11973 NQRA_SLBB NQRA C-ter 91.7 0.36 9.1E-06 27.9 4.7 46 241-292 1-47 (51)
22 TIGR00692 tdh L-threonine 3-de 86.2 0.19 4.8E-06 29.8 -0.0 25 111-135 179-203 (341)
23 cd03008 TryX_like_RdCVF Trypar 80.8 1.1 2.7E-05 24.7 2.0 20 345-364 34-53 (146)
24 KOG1145 consensus 76.1 6.2 0.00016 19.6 6.1 90 240-342 154-251 (683)
25 COG1062 AdhC Zn-dependent alco 75.0 0.55 1.4E-05 26.6 -0.8 17 353-369 342-358 (366)
26 TIGR02375 pseudoazurin pseudoa 73.9 1.9 4.8E-05 23.0 1.7 44 195-257 31-74 (123)
27 PRK06964 DNA polymerase III su 70.0 4.2 0.00011 20.7 2.7 22 79-100 44-68 (342)
28 KOG2501 consensus 69.1 1.8 4.5E-05 23.2 0.6 25 344-368 41-65 (157)
29 TIGR02812 fadR_gamma fatty aci 66.0 3.2 8.2E-05 21.5 1.5 16 202-217 64-88 (275)
30 COG3347 Uncharacterized conser 61.0 13 0.00032 17.5 4.5 34 376-409 363-396 (404)
31 cd03009 TryX_like_TryX_NRX Try 58.3 6.8 0.00017 19.3 2.0 13 78-90 19-33 (131)
32 PHA00330 putative replication 58.1 5 0.00013 20.1 1.3 14 128-141 105-118 (317)
33 PRK07993 DNA polymerase III su 56.7 10 0.00026 18.1 2.7 82 79-183 47-133 (334)
34 COG1064 AdhP Zn-dependent alco 56.7 3.1 8E-05 21.5 0.0 24 44-67 140-163 (339)
35 PRK10083 putative dehydrogenas 54.2 4.7 0.00012 20.3 0.6 16 358-373 289-304 (339)
36 COG0320 LipA Lipoate synthase 52.4 2.2 5.6E-05 22.6 -1.3 173 100-317 100-281 (306)
37 COG1162 Predicted GTPases [Gen 49.9 19 0.00048 16.3 7.8 151 78-267 83-241 (301)
38 PRK08699 DNA polymerase III su 48.8 14 0.00036 17.1 2.3 25 159-183 114-138 (325)
39 cd03012 TlpA_like_DipZ_like Tl 48.4 16 0.00042 16.7 2.6 13 78-90 24-38 (126)
40 TIGR03451 mycoS_dep_FDH mycoth 47.9 4.2 0.00011 20.7 -0.5 17 353-369 334-350 (358)
41 PRK09880 L-idonate 5-dehydroge 47.1 5.9 0.00015 19.7 0.2 14 358-371 296-309 (343)
42 cd02964 TryX_like_family Trypa 46.9 13 0.00033 17.4 1.9 13 78-90 18-32 (132)
43 PRK05707 DNA polymerase III su 46.6 18 0.00046 16.4 2.6 82 79-183 45-131 (328)
44 PRK03147 thiol-disulfide oxido 45.7 14 0.00035 17.2 1.9 10 238-247 95-104 (176)
45 PRK12288 ribosome-associated G 44.2 23 0.00058 15.7 9.3 88 103-212 138-228 (344)
46 PRK00098 ribosome-associated G 44.2 23 0.00059 15.7 9.3 87 104-212 98-185 (298)
47 TIGR03201 dearomat_had 6-hydro 43.7 7.6 0.00019 18.9 0.3 17 354-370 325-341 (349)
48 PRK08058 DNA polymerase III su 41.3 23 0.00059 15.7 2.5 25 159-183 111-135 (329)
49 pfam04034 DUF367 Domain of unk 41.1 26 0.00065 15.4 2.9 36 188-223 46-82 (128)
50 pfam01031 Dynamin_M Dynamin ce 40.6 26 0.00066 15.3 3.6 14 255-268 140-153 (295)
51 TIGR01743 purR_Bsub pur operon 39.8 27 0.00068 15.3 3.6 102 95-217 12-122 (269)
52 TIGR02418 acolac_catab acetola 39.5 13 0.00033 17.4 1.0 76 302-394 280-361 (553)
53 KOG2453 consensus 39.0 15 0.00039 16.9 1.3 36 316-353 268-304 (507)
54 KOG0633 consensus 38.6 28 0.00071 15.1 3.1 75 240-326 122-199 (375)
55 TIGR00604 rad3 DNA repair heli 38.3 28 0.00072 15.1 4.8 80 308-387 266-359 (813)
56 PRK05396 tdh L-threonine 3-deh 38.0 10 0.00026 18.1 0.3 18 352-369 315-332 (341)
57 PRK05298 excinuclease ABC subu 36.6 28 0.00072 15.1 2.3 48 371-418 291-340 (657)
58 TIGR00631 uvrb excinuclease AB 35.9 5.5 0.00014 19.9 -1.4 74 331-419 263-341 (667)
59 TIGR01312 XylB xylulokinase; I 35.1 8.2 0.00021 18.7 -0.6 136 206-388 179-333 (494)
60 TIGR02818 adh_III_F_hyde S-(hy 34.5 6.2 0.00016 19.5 -1.3 13 207-219 262-274 (368)
61 TIGR01702 CO_DH_cata carbon-mo 34.4 32 0.00082 14.7 2.7 237 40-338 166-479 (647)
62 pfam03431 RNA_replicase_B RNA 34.1 33 0.00083 14.7 2.6 68 315-382 325-427 (539)
63 pfam08240 ADH_N Alcohol dehydr 33.7 9.2 0.00024 18.4 -0.5 17 343-359 64-80 (108)
64 COG1312 UxuA D-mannonate dehyd 33.0 30 0.00076 14.9 2.0 29 190-222 212-240 (362)
65 TIGR03599 YloV DAK2 domain fus 32.9 34 0.00087 14.5 3.0 282 16-386 140-427 (530)
66 TIGR01068 thioredoxin thioredo 32.9 25 0.00063 15.5 1.5 49 338-390 20-69 (101)
67 TIGR00385 dsbE periplasmic pro 32.9 23 0.00058 15.7 1.4 47 77-138 64-115 (175)
68 TIGR01931 cysJ sulfite reducta 32.1 11 0.00029 17.7 -0.3 32 233-269 410-441 (628)
69 PRK05481 lipoyl synthase; Prov 31.8 10 0.00026 18.1 -0.6 189 82-319 69-266 (289)
70 PHA00028 rep RNA replicase, be 31.6 36 0.00091 14.4 2.7 76 317-392 333-444 (561)
71 COG0556 UvrB Helicase subunit 31.6 11 0.00029 17.8 -0.4 47 371-417 290-338 (663)
72 COG1461 Predicted kinase relat 31.5 36 0.00092 14.4 2.8 116 244-385 320-438 (542)
73 pfam12395 DUF3658 Protein of u 31.3 36 0.00092 14.4 3.2 89 32-141 5-93 (111)
74 PRK05354 arginine decarboxylas 31.1 36 0.00093 14.3 7.0 205 21-264 90-314 (634)
75 TIGR01944 rnfB electron transp 29.9 13 0.00032 17.5 -0.4 68 311-386 21-94 (213)
76 pfam01950 FBPase_3 Fructose-1, 29.5 39 0.00099 14.2 2.8 262 8-359 57-346 (364)
77 TIGR02963 xanthine_xdhA xanthi 29.4 20 0.0005 16.2 0.5 30 354-385 452-481 (515)
78 COG4152 ABC-type uncharacteriz 28.9 40 0.001 14.1 2.2 51 195-245 77-132 (300)
79 TIGR02082 metH methionine synt 28.6 16 0.00041 16.7 -0.0 82 205-296 721-826 (1265)
80 cd03011 TlpA_like_ScsD_MtbDsbE 28.6 25 0.00064 15.4 1.0 13 78-90 21-35 (123)
81 pfam01799 Fer2_2 [2Fe-2S] bind 27.9 25 0.00064 15.4 0.9 20 331-351 13-32 (75)
82 COG1829 Predicted archaeal kin 27.8 17 0.00043 16.6 -0.0 45 249-304 116-160 (283)
83 TIGR01559 squal_synth farnesyl 27.7 35 0.00088 14.5 1.6 69 86-169 76-149 (350)
84 TIGR01020 rpsE_arch ribosomal 27.6 22 0.00056 15.8 0.6 74 115-201 84-161 (220)
85 KOG0910 consensus 27.5 40 0.001 14.1 1.8 20 346-365 71-90 (150)
86 PRK13412 fkp bifunctional fuco 27.3 42 0.0011 13.9 2.2 14 114-127 225-238 (974)
87 TIGR02708 L_lactate_ox L-lacta 26.9 43 0.0011 13.9 2.7 135 242-416 169-343 (368)
88 pfam04363 DUF496 Protein of un 26.8 43 0.0011 13.9 5.7 41 372-419 32-72 (95)
89 pfam06251 DUF1017 SLBB-domain 26.8 43 0.0011 13.9 7.9 91 240-342 73-169 (173)
90 TIGR02707 butyr_kinase butyrat 26.8 17 0.00044 16.5 -0.1 62 2-81 17-86 (353)
91 pfam09606 Med15 ARC105 or Med1 26.7 43 0.0011 13.8 3.3 13 376-388 737-749 (768)
92 PRK03958 tRNA 2'-O-methylase; 26.5 44 0.0011 13.8 4.5 33 108-142 21-53 (175)
93 TIGR02264 gmx_para_CXXCG Myxoc 26.3 41 0.001 14.0 1.7 16 43-58 129-144 (247)
94 TIGR02723 phenyl_P_alpha pheny 26.3 44 0.0011 13.8 2.5 38 310-352 369-408 (485)
95 PHA01735 hypothetical protein 26.2 44 0.0011 13.8 4.9 50 357-410 17-66 (76)
96 smart00190 IL4_13 Interleukins 25.1 46 0.0012 13.6 4.1 66 331-424 72-138 (138)
97 pfam06733 DEAD_2 DEAD_2. This 25.0 45 0.0012 13.7 1.8 24 317-340 139-162 (168)
98 TIGR01929 menB naphthoate synt 24.7 28 0.00071 15.1 0.6 23 238-260 64-89 (278)
99 PRK02287 hypothetical protein; 24.2 48 0.0012 13.5 2.9 38 186-223 83-121 (169)
100 pfam09795 Atg31 Autophagy-rela 24.2 45 0.0011 13.7 1.6 37 53-89 31-78 (159)
101 KOG1547 consensus 23.6 49 0.0013 13.5 2.5 13 154-166 42-54 (336)
102 TIGR00920 2A060605 3-hydroxy-3 23.6 49 0.0013 13.5 2.3 54 32-95 361-416 (988)
103 KOG1769 consensus 23.1 50 0.0013 13.4 4.5 58 242-299 23-80 (99)
104 pfam04722 Ssu72 Ssu72-like pro 23.1 50 0.0013 13.4 2.7 37 227-270 29-66 (193)
105 TIGR00276 TIGR00276 iron-sulfu 22.6 23 0.00059 15.6 -0.1 51 95-152 83-136 (297)
106 PRK12928 lipoyl synthase; Prov 22.5 13 0.00033 17.3 -1.4 187 82-318 77-273 (290)
107 COG1453 Predicted oxidoreducta 22.5 52 0.0013 13.3 6.4 72 344-415 297-387 (391)
108 PRK08445 hypothetical protein; 22.5 52 0.0013 13.3 3.3 18 408-425 320-337 (348)
109 TIGR01361 DAHP_synth_Bsub phos 22.4 39 0.00098 14.2 1.0 54 207-268 98-151 (262)
110 COG4032 Predicted thiamine-pyr 22.2 17 0.00043 16.6 -0.8 68 166-268 58-125 (172)
111 pfam03786 UxuA D-mannonate deh 21.8 53 0.0014 13.2 2.1 95 191-338 207-304 (350)
112 PRK13771 putative alcohol dehy 21.5 26 0.00066 15.4 -0.0 19 351-369 305-323 (332)
113 cd02949 TRX_NTR TRX domain, no 21.1 55 0.0014 13.1 1.9 19 346-364 23-41 (97)
114 TIGR00430 Q_tRNA_tgt queuine t 20.6 29 0.00073 15.1 0.0 67 327-418 346-412 (415)
115 TIGR01842 type_I_sec_PrtD type 20.5 56 0.0014 13.1 2.6 55 79-144 249-306 (556)
116 cd02950 TxlA TRX-like protein 20.5 52 0.0013 13.3 1.3 16 75-90 20-35 (142)
117 cd03010 TlpA_like_DsbE TlpA-li 20.4 29 0.00073 15.1 -0.0 13 78-90 26-40 (127)
118 cd02967 mauD Methylamine utili 20.0 55 0.0014 13.1 1.4 11 203-213 21-31 (114)
No 1
>TIGR01959 nuoF_fam NADH-quinone oxidoreductase, F subunit; InterPro: IPR011537 This entry describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. ; GO: 0010181 FMN binding, 0016651 oxidoreductase activity acting on NADH or NADPH, 0051287 NAD binding, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1288.94 Aligned_cols=410 Identities=63% Similarity=1.066 Sum_probs=402.3
Q ss_pred HHHHHHCC-CCCCCHHHHHHCC---CHHHHHHHHHC--CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC-CCCEE
Q ss_conf 36755178-7677989999779---98999999826--989999999983977687571124556874235656-88619
Q gi|254780858|r 7 RIFTNLYG-LQGKSLSDSMSRG---HWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-DRPHY 79 (425)
Q Consensus 7 r~~~~~~~-~~~~~l~~y~~~g---gy~~l~~~l~~--~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~-~~~~y 79 (425)
++|+|++. .++++|++|.++| ||++|+|+|++ +||+||++||+||||||||||||||.||+||||..+ .+|||
T Consensus 1 ~l~~~~~~D~~~~~L~~Y~~~gryrgY~~l~KaL~~~~~~ddii~~VK~SGLRGRGGAGFpTGlKWSFmPK~~sg~~pkY 80 (420)
T TIGR01959 1 VLTTNLDDDPESWTLEEYEKRGRYRGYDALRKALEEKMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSGPKPKY 80 (420)
T ss_pred CCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 95144324888510788963487024799999985267812588998743798788887643442233567878888536
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCC
Q ss_conf 9985767784860048999862589999999999971836389981555178999999999999868997767-678866
Q gi|254780858|r 80 LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158 (425)
Q Consensus 80 vv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~ 158 (425)
|||||||+||||||||.||+++||+|||||+|+|||++|+++|||||+||..++++|++||+||+++||||+| ++||||
T Consensus 81 LvCNADE~EPGTcKDR~lm~~~PH~LIEGm~IaayA~ga~~gYiYiRGEf~~~~~~l~~Ai~EA~~~G~LGkNIlGsGFD 160 (420)
T TIGR01959 81 LVCNADEGEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAKRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFD 160 (420)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88727779777131489986288703057888778752531047861301678899999999999759820033788620
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCC-CCCC
Q ss_conf 406997457510011078899863089998688899862278303785000289999999999605688863389-8774
Q gi|254780858|r 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNR 237 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~-~~~~ 237 (425)
|||.||+||||||||||||||||||||||+||.||||||..|||||||+||||||||+||.||++|++||+++|. ++++
T Consensus 161 f~l~~H~GAGAYICGEETALleSLEGkrGqPRlKPPFPA~~GLYG~PT~iNNVETla~VP~I~~~G~~Wy~~~G~~~~~~ 240 (420)
T TIGR01959 161 FELFVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYSKLGKSEKSP 240 (420)
T ss_pred EEEEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 57634338885050478974531057668455221787455566788436463233345788721689998507888888
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 30476426788787268935898799999986155678711004898524565653210024563342201103873466
Q gi|254780858|r 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 (425)
Q Consensus 238 Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGs 317 (425)
|||||||||||+|||+||+||||||+||||+||||+++|++.||||||||.|+++|++++..+++||||+++++||||||
T Consensus 241 GtKLfs~SGhV~kPG~yE~plG~pl~ELledyAGG~r~G~~NLKaviPGGsS~P~L~~~~~~~~~MDydsl~~~GSmLGt 320 (420)
T TIGR01959 241 GTKLFSVSGHVNKPGNYELPLGIPLRELLEDYAGGVRGGWKNLKAVIPGGSSTPVLPAEEHLDVPMDYDSLAAAGSMLGT 320 (420)
T ss_pred CCEEEEEEEEEECCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCE
T ss_conf 85487531066579447700677689999986789888725454572687677761645540246677889864411220
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCCCCCCHH
Q ss_conf 5179942865289999999999987627998852302899999999998289998999999999986223-666776502
Q gi|254780858|r 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDA 396 (425)
Q Consensus 318 g~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~-~S~C~lG~~ 396 (425)
|+|||||+++|||.++.++.+||+||||||||||||||.|+.+||+||.+|+|+++|||+|.+|++.|.+ .|||+||++
T Consensus 321 g~~iv~D~~tc~V~~~~Rl~~Fy~hESCGqCTPCREGt~W~~~il~rie~G~G~~~Did~L~~v~~~i~GG~TiCAlgda 400 (420)
T TIGR01959 321 GAVIVMDESTCIVKAVRRLSEFYAHESCGQCTPCREGTGWLVKILERIEEGEGKKEDIDLLLSVCKQIEGGKTICALGDA 400 (420)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 32687747834889999999973025787857875762459999999971789843589999997434889333678656
Q ss_pred HHHHHHHHHHHCHHHHHHHH
Q ss_conf 47999999863889999998
Q gi|254780858|r 397 AAWPIQGLIKNFRPLIEERI 416 (425)
Q Consensus 397 a~~pv~s~l~~F~dEfe~hI 416 (425)
|+.||+|+|+||||||++||
T Consensus 401 Aa~P~~~~ikhFR~EFe~~i 420 (420)
T TIGR01959 401 AAWPVQSAIKHFRDEFEAHI 420 (420)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 65654778887789983379
No 2
>PRK13596 NADH dehydrogenase I subunit F; Provisional
Probab=100.00 E-value=0 Score=1155.06 Aligned_cols=420 Identities=79% Similarity=1.332 Sum_probs=413.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 62034367551787677989999779989999998269899999999839776875711245568742356568861999
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv 81 (425)
|+||+|||+|+++.++++|++|+++|||++|+|+++|+|++||++|++||||||||||||||+||+++++...+++||||
T Consensus 1 l~~~~ri~~n~~~~~~~~l~~y~~~GGy~~l~~~~~m~p~~vi~evk~SgLrGRGGAGFPtG~KW~~~~~~~~~~~~Yvv 80 (426)
T PRK13596 1 LKDKDRIFTNLYGLQDWSLKGAKARGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 80 (426)
T ss_pred CCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEE
T ss_conf 97213112101379999999999769999999999579999999999748888886636110247860313489962898
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf 85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 (425)
Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~ 160 (425)
|||||+||||||||+||+++||+|||||+|++||+||+++|||||+||+.++++|++||+|++++|+||+| +++||+|+
T Consensus 81 ~NadEgEPGtfKDR~ll~~~Ph~viEG~~iaa~aigA~~~~iyiR~ey~~~~~~l~~Ai~ea~~~g~LG~nilgsg~~~~ 160 (426)
T PRK13596 81 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 160 (426)
T ss_pred EECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 62688998640169988338188999999999983686489994524399999999999999983888765568887757
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEE
Q ss_conf 69974575100110788998630899986888998622783037850002899999999996056888633898774304
Q gi|254780858|r 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 (425)
Q Consensus 161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtk 240 (425)
|+||+|+|+||||||||||+||||+|++||.|||||++.||||+||+||||||||+||+|+++|++||+++|+++++|||
T Consensus 161 i~v~~gaGaYIcGEetALl~slEG~rg~Pr~kPP~p~~~Gl~g~PT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~GTk 240 (426)
T PRK13596 161 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 240 (426)
T ss_pred EEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 89741687412061899999841799999999998543676799844567889998999997038999728988899817
Q ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 76426788787268935898799999986155678711004898524565653210024563342201103873466517
Q gi|254780858|r 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 (425)
Q Consensus 241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~i 320 (425)
+|||||+|++|||||+|+||||+|||+++|||+.+|++++||||+||+|+++||+++++++|||||+++++|++||||+|
T Consensus 241 l~svsG~V~~PGvyE~p~G~~l~eli~~~~GG~~~G~~~~kav~pGG~S~~~l~~~~~~d~~ld~esl~~~Gs~LGsG~i 320 (426)
T PRK13596 241 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAGV 320 (426)
T ss_pred EEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCEE
T ss_conf 99832663578269946887599999996388778876527998568877767888956577787889873877577501
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99428652899999999999876279988523028999999999982899989999999999862236667765024799
Q gi|254780858|r 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 (425)
Q Consensus 321 iV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~p 400 (425)
||||+++|||++++++++||+|||||||||||+||+|+.++|++|.+|+++++|+++|.+++++|+++|+|+||+++++|
T Consensus 321 iV~d~~~~~v~~~~~~~~F~a~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dld~L~~l~~~m~~~s~CgLG~~a~~p 400 (426)
T PRK13596 321 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 400 (426)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 67489788999999999872447899998645159999999999983999989999999999855688658373210899
Q ss_pred HHHHHHHCHHHHHHHHHHHCC
Q ss_conf 999986388999999865189
Q gi|254780858|r 401 IQGLIKNFRPLIEERIDQYHR 421 (425)
Q Consensus 401 v~s~l~~F~dEfe~hI~~~~r 421 (425)
|.|+|+|||+||++||++++|
T Consensus 401 v~S~l~~F~~Efe~~i~~~~~ 421 (426)
T PRK13596 401 IQGLIRHFRPEIEERIDEYTR 421 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998679999999987153
No 3
>PTZ00304 NADH dehydrogenase (ubiquinone); Provisional
Probab=100.00 E-value=0 Score=1155.98 Aligned_cols=422 Identities=64% Similarity=1.155 Sum_probs=414.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC-CCCCEEE
Q ss_conf 620343675517876779899997799899999982698999999998397768757112455687423565-6886199
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDRPHYL 80 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~-~~~~~yv 80 (425)
|+||||||+|+|+.++++|+..+++|+|...++++.++||+||++||+||||||||||||||+||+++++.. +++||||
T Consensus 22 l~d~drif~nlyg~~~~~l~~a~~rg~w~~tk~~~~~g~d~II~EvK~SGLRGRGGAGFPTG~KW~f~~~~~~~~kpkYl 101 (483)
T PTZ00304 22 LKDQDRIFTNLYNDFGTGIDSAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKKPDGRPSYI 101 (483)
T ss_pred CCCCCHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf 85313233301468883645688737958799999759699999999627888887746366642534466788985389
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 985767784860048999862589999999999971836389981555178999999999999868997767-6788664
Q gi|254780858|r 81 VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159 (425)
Q Consensus 81 v~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~ 159 (425)
||||||+||||||||+||+++||+|||||+|++||+||+++|||||+||+.++++|++||+||+++|+||+| +++||+|
T Consensus 102 VcNaDEgEPGTfKDR~ile~dPH~lIEGmlIAa~AigA~~gyIYiRgEy~~~~~~L~~AI~eA~~~GlLG~nilGsg~~f 181 (483)
T PTZ00304 102 VVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYAKGYLGRNACGSGYDF 181 (483)
T ss_pred EEECCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99488898540358999842828899999999999688869999557569999999999999987574565456888764
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
Q ss_conf 06997457510011078899863089998688899862278303785000289999999999605688863389877430
Q gi|254780858|r 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 (425)
Q Consensus 160 ~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt 239 (425)
+|+||+|+|+||||||||||+|||||||+||.|||||+++||||+||+||||||||+||.|+++|++||+++|+++++||
T Consensus 182 dI~v~~GAGAYICGEETALieSlEGkrG~PR~KPPfPa~~GL~g~PT~VNNVETlA~VP~Il~~Ga~wfas~G~~~s~GT 261 (483)
T PTZ00304 182 DLYTYRGAGAYICGEETAMISSIEGGPGKPRLKPPFPANVGLYGCPTTVTNCETVSVSPTILRRGPQWFASFGRKNNAGV 261 (483)
T ss_pred EEEEEECCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
T ss_conf 68999668851746399999985799999999999875577579996333412387789999547399984798999981
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf 47642678878726893589879999998615567871100489852456565321002456334220110387346651
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~ 319 (425)
|+|||||+|++||+||+||||||+|||+++|||+.+|++++||||+||+|+++||++.+|+++||||+|+++||+||||+
T Consensus 262 KlfsvSG~V~~PGv~E~pmG~~LrelI~~~~GGv~~G~~~lkAv~pGG~S~~~lp~~~~d~~~mDfdsL~~~Gs~lGsG~ 341 (483)
T PTZ00304 262 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICDNVLMDYDALKEAQTGLGTAA 341 (483)
T ss_pred EEEEECCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHCCCCCCEE
T ss_conf 26651366458805996489829999998679975873225999746866675897880766677588997277777537
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 79942865289999999999987627998852302899999999998289998999999999986223666776502479
Q gi|254780858|r 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399 (425)
Q Consensus 320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~ 399 (425)
|||||+++|||++++++++||+|||||||||||+||.||.++|+||.+|+++++|+++|.+++++|.+.|+|+||++|++
T Consensus 342 vIV~d~~~~mv~~~~~~~~F~~~ESCGqCTPCReGT~wm~~il~ri~~G~g~~~did~L~~l~~~i~g~tiCaLG~aAa~ 421 (483)
T PTZ00304 342 VIVMDKSTDLIAAIHRLSQFYAHESCGQCTPCREGSPWLEKMMKRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAW 421 (483)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 99986999999999999999607778899786172899999999997499988999999999964338710647766507
Q ss_pred HHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 999998638899999986518999
Q gi|254780858|r 400 PIQGLIKNFRPLIEERIDQYHRCN 423 (425)
Q Consensus 400 pv~s~l~~F~dEfe~hI~~~~rCp 423 (425)
||+|+|+|||+|||+||++|+.++
T Consensus 422 Pv~s~ir~FR~e~E~~I~~~~~~~ 445 (483)
T PTZ00304 422 PVQGLARHFTPLLEERIERYWEAN 445 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999880899999999998609
No 4
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=1142.99 Aligned_cols=415 Identities=60% Similarity=1.039 Sum_probs=407.2
Q ss_pred CCCHHHH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHH-HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 9620343-67551787677989999779989999998-269899999999839776875711245568742356568861
Q gi|254780858|r 1 MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78 (425)
Q Consensus 1 ~~~~~~r-~~~~~~~~~~~~l~~y~~~ggy~~l~~~l-~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~ 78 (425)
|+++|.| +|+|++..|+++|++|+++|||++|+|+| +|+|++||++||+||||||||||||||.||++++++.++. |
T Consensus 5 ~~~~~~r~~~~~~~~~~~~~l~~y~a~ggy~~l~kal~~m~p~~II~~Vk~SGLRGRGGAGFpTGlKWsfm~k~~~~~-k 83 (424)
T COG1894 5 FLKNQDRITFRNLGDPDPWSLDEYLARGGYEGLRKALTEMGPDEIIEEVKESGLRGRGGAGFPTGLKWSFMPKATSDQ-K 83 (424)
T ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCC-E
T ss_conf 010003579985579985549999854749999999986598999999987177777877787775211012478896-4
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 99985767784860048999862589999999999971836389981555178999999999999868997767-67886
Q gi|254780858|r 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGY 157 (425)
Q Consensus 79 yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~ 157 (425)
||||||||+||||||||.||+++||++||||+|++||+||+++|||||+||+.++++|++||+||+++||||+| ++|||
T Consensus 84 ylvcNADE~ePGTfkDR~ime~dPH~LIEGm~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~~GlLGknilGSgf 163 (424)
T COG1894 84 YLVCNADEGEPGTFKDRLIMEGDPHLLIEGMIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYAAGLLGKNILGSGF 163 (424)
T ss_pred EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89984898997522137877059478888899999984453368997333099999999999999980856655568875
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCC
Q ss_conf 64069974575100110788998630899986888998622783037850002899999999996056888633898774
Q gi|254780858|r 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237 (425)
Q Consensus 158 ~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~ 237 (425)
+|+|.||.|+||||||||||||+||||||++||.|||||+..||||+||+||||||+|+||.|+++|++||+++|+++++
T Consensus 164 dfdl~vh~GAGAYICGEETALl~SLEGkrg~PR~KPPfPa~~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s~ 243 (424)
T COG1894 164 DFDLYVHHGAGAYICGEETALLESLEGKRGQPRLKPPFPATSGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNSR 243 (424)
T ss_pred CEEEEEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44899952776324052889888742778999999898644576689855402110020289998638999844888899
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 30476426788787268935898799999986155678711004898524565653210024563342201103873466
Q gi|254780858|r 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 (425)
Q Consensus 238 Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGs 317 (425)
|||+|+|||+|+|||+||+|||||+||||+++|||+.+|+ ++||||+||||+++||.+.+| +|||||+++++||+|||
T Consensus 244 GTKlf~~sG~V~~pg~~E~pmG~tlrelie~~aGG~r~G~-~lKAv~pGG~s~~~l~~~~~d-~pmDydsl~~~gs~lGt 321 (424)
T COG1894 244 GTKLFSLSGHVKNPGLYEVPMGTTLRELIEDYAGGVRGGW-KLKAVQPGGPSGPCLPEELLD-TPMDYDSLAKAGSMLGT 321 (424)
T ss_pred CCEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCCCC-EEEEEEECCCCCCCCCHHHHC-CCCCHHHHHHHCCCCCC
T ss_conf 8347886111268863772178859999999568867883-468996289876667888837-87677889860546676
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 51799428652899999999999876279988523028999999999982899989999999999862236667765024
Q gi|254780858|r 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397 (425)
Q Consensus 318 g~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a 397 (425)
|+|||||+++|||++++++++||+|||||||||||+||.|+.++|+||.+|+++++|+++|.+++++|+..|+|+||++|
T Consensus 322 ggiiV~d~~~~mv~~~~~~~~F~~~ESCGkCtPCReGt~w~~~il~ri~~G~~~~~dl~~L~~l~~~i~g~s~CalG~~a 401 (424)
T COG1894 322 GGIIVMDDSTCMVKAARRLSEFYKHESCGKCTPCREGTGWMVRILERLVRGEGQPEDLDLLEDLCNQIKGKTFCALGDAA 401 (424)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 42899847500999999999985367688887866873789999999984888866799999997242774233227655
Q ss_pred HHHHHHHHHHCHHHHHHHHHH
Q ss_conf 799999986388999999865
Q gi|254780858|r 398 AWPIQGLIKNFRPLIEERIDQ 418 (425)
Q Consensus 398 ~~pv~s~l~~F~dEfe~hI~~ 418 (425)
++||+|+|+||||||++||+.
T Consensus 402 ~~Pv~s~lr~Fr~E~~~~i~~ 422 (424)
T COG1894 402 AWPVQSALRHFRDEFEAHIKV 422 (424)
T ss_pred CHHHHHHHHHCHHHHHHHHCC
T ss_conf 046899998678999976304
No 5
>PRK11278 NADH dehydrogenase I subunit F; Provisional
Probab=100.00 E-value=0 Score=1123.93 Aligned_cols=415 Identities=41% Similarity=0.734 Sum_probs=403.7
Q ss_pred HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 675517876779899997799899999982-6989999999983977687571124556874235656886199985767
Q gi|254780858|r 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86 (425)
Q Consensus 8 ~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E 86 (425)
.|.|....||.+|++|+++|||++|+|+|+ |+|++|+++|++||||||||||||||+||+++++.....+|||||||||
T Consensus 15 ~~r~~~~~dp~~i~~Y~~~gGy~~l~kal~~m~p~evi~evk~SgLrGRGGAGFPtg~KW~~~~~~~~~~~kYvVcNadE 94 (448)
T PRK11278 15 TWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADE 94 (448)
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCC
T ss_conf 22336799987899998668799999998529999999999984887788674745313453114668996389996998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEEE
Q ss_conf 784860048999862589999999999971836389981555178999999999999868997767-6788664069974
Q gi|254780858|r 87 SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHH 165 (425)
Q Consensus 87 ~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i~v~~ 165 (425)
+||||||||+||+++||+|||||+|++||+||+++|||||+||+.++++|++||+|++++|+||+| ++++|+|+|+||+
T Consensus 95 gEPGtfKDR~lle~~Ph~viEGmiIaa~AigA~~~yIYiR~Ey~~~~~~l~~AI~ea~~~g~lG~nI~gsg~~~di~v~~ 174 (448)
T PRK11278 95 MEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHT 174 (448)
T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
T ss_conf 98443128998863956899999999999588648998265039999999999999997497776655777774579961
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCC--CEEEEE
Q ss_conf 575100110788998630899986888998622783037850002899999999996056888633898774--304764
Q gi|254780858|r 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTKLFS 243 (425)
Q Consensus 166 g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~--Gtkl~t 243 (425)
|+|+||||||||||+||||+|++||.|||||+++||||+||+||||||||+||+|+++|++||+++|+++++ |||+||
T Consensus 175 GaGaYIcGEETALleSiEGkrg~PR~kPPfpa~~Gl~gkPT~VNNVETla~Vp~I~~~G~~wf~~~G~~~s~~~GTklfs 254 (448)
T PRK11278 175 GAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISRGKSKDAGTKLMG 254 (448)
T ss_pred CCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 68722536299999984489998898999875467678984345699999899999863798874688889999827998
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 26788787268935898799999986155678711004898524565653210024563342201103873466517994
Q gi|254780858|r 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 (425)
Q Consensus 244 vsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~ 323 (425)
|||+|+||||||+|+||||+|||+++|||+.+| +++|||++||+|+++|+++++| +||||+++.+.||+||||+||||
T Consensus 255 vSG~V~~PGvyEvp~G~tL~eli~~~~GG~~~G-~~~kav~pGG~sg~~l~~~~ld-~~ld~~sl~~~Gs~LGsG~viV~ 332 (448)
T PRK11278 255 FSGRVKNPGLWELPFGTTAREILEDYAGGMRDG-LKFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAV 332 (448)
T ss_pred ECCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC-CCCEEEEECCCCCCCCCHHHHC-CCCCHHHHHHCCCCCCCEEEEEE
T ss_conf 236644684499459991999999838887899-5424997478777777988947-87786778644775344048983
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHH
Q ss_conf 286528999999999998762799885230289999999999828999899999999998622-3666776502479999
Q gi|254780858|r 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQ 402 (425)
Q Consensus 324 de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~-~~S~C~lG~~a~~pv~ 402 (425)
|+++||+++++++++||+|||||||||||+||.|+.++|+||.+|+++++|+++|++++++|. ++|+|+||+++++||+
T Consensus 333 d~~~~~v~~~~~~~~F~~~ESCGqCtPCReGt~~l~~il~ri~~G~g~~~Dl~~L~~la~~m~~g~s~C~LG~~a~~Pv~ 412 (448)
T PRK11278 333 DHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQ 412 (448)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 68776999999999871568899998751719999999999984999989999999999874579610758533517999
Q ss_pred HHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf 99863889999998651899999
Q gi|254780858|r 403 GLIKNFRPLIEERIDQYHRCNFQ 425 (425)
Q Consensus 403 s~l~~F~dEfe~hI~~~~rCp~~ 425 (425)
|+|++||+||++||++ ++||.+
T Consensus 413 s~l~~F~~EfeahI~~-~~~~~~ 434 (448)
T PRK11278 413 SAIKYFREEFEAGIKQ-PFSNTH 434 (448)
T ss_pred HHHHHHHHHHHHHHCC-CCCCCC
T ss_conf 9998779999998606-788765
No 6
>KOG2658 consensus
Probab=100.00 E-value=0 Score=930.00 Aligned_cols=419 Identities=66% Similarity=1.187 Sum_probs=414.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 62034367551787677989999779989999998269899999999839776875711245568742356568861999
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv 81 (425)
|+|++|||||+|+++++.|++.+++|+|..++.++..+|++|+++|++||||||||||||+|.||+++++..+++|||||
T Consensus 50 l~d~dRiFtNLygrhd~rlkgA~~rGdw~~tkEil~kg~~wI~~evk~SgLRGRGgaGFpsGlKw~fm~k~sd~rpk~lv 129 (478)
T KOG2658 50 LADEDRIFTNLYGRHDWRLKGALARGDWHKTKEILLKGPDWIVNEVKTSGLRGRGGAGFPSGLKWSFMNKPSDGRPKYLV 129 (478)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHCCCCCCCCCCEEE
T ss_conf 55411454555520106553135336567689998709499999877634556787788765410001478778973799
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf 85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 (425)
Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~ 160 (425)
+|+||+||||||||.||+|+||++|||.+|++.+++|..+|||||++|.+..-.|++||.|||++||||+| .++|++||
T Consensus 130 VNadEgepGtcKDReilRHdPHKliEG~liagram~a~aayiyIR~efynEa~nlq~ai~eAY~agllGkn~cGtg~~fd 209 (478)
T KOG2658 130 VNADEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGASAAYIYIRGEFYNEACNLQKAIIEAYAAGLLGKNACGTGYDFD 209 (478)
T ss_pred EECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 97888999756117876258077664443433210663258985004677887899999999984413554446775726
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEE
Q ss_conf 69974575100110788998630899986888998622783037850002899999999996056888633898774304
Q gi|254780858|r 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240 (425)
Q Consensus 161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtk 240 (425)
+.||+|+|+||||||||||+|||||.|.||.|||||+++|+||+||+|-||||+|++|.|++.|+.||.++|.+.+.|||
T Consensus 210 v~vhrGagaYicGEEtAlIesLeGk~gkPr~kppf~a~~G~Fg~Pt~V~NvETVav~PtI~rrG~~wfasfGR~~N~GTK 289 (478)
T KOG2658 210 VFVHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADSGLFGCPTTVTNVETVAVSPTICRRGGKWFASFGRPRNRGTK 289 (478)
T ss_pred EEEECCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHCCCHHHHHCCCCCCCCCE
T ss_conf 99953886333061889999860557998899998454552368722531023304408884365345541887788743
Q ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf 76426788787268935898799999986155678711004898524565653210024563342201103873466517
Q gi|254780858|r 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320 (425)
Q Consensus 241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~i 320 (425)
||++||+|++|+++|.+|.+||+||||.||||+.+||+++-|++|||+|.++++++..+++.||||+|.+++|.||+|+|
T Consensus 290 Lf~iSG~Vn~PctVEeeMSiPlKdLIErhaGGV~GGWdnLlaiiPGG~stpli~kn~c~~vlmDFD~L~a~~S~lGtgav 369 (478)
T KOG2658 290 LFCISGHVNNPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLAIIPGGSSTPLIPKNVCEQVLMDFDSLKAAQSGLGTGAV 369 (478)
T ss_pred EEEECCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEE
T ss_conf 78743655897405777277389999984587436533214656699888771866675661146877766426873159
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99428652899999999999876279988523028999999999982899989999999999862236667765024799
Q gi|254780858|r 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400 (425)
Q Consensus 321 iV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~p 400 (425)
||||+++++++.+.++++||.|||||||||||+|+.|+.+++.|+.+|+++++++|+|-++++.|.+.++|+||+++++|
T Consensus 370 IVm~k~tdi~~~iarl~~FykhesC~qCt~CReG~~w~~~im~rfv~G~a~~~eid~~~e~~kqieghtiCalgd~aa~~ 449 (478)
T KOG2658 370 IVMNKSTDIVKAIARLIKFYKHESCGQCTPCREGVEWLNEIMARFVDGQAHPSEIDMLFEISKQIEGHTICALGDSAAWP 449 (478)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 99707873999999999986236688787411125689999999752787889988999997543785345405554351
Q ss_pred HHHHHHHCHHHHHHHHHHHC
Q ss_conf 99998638899999986518
Q gi|254780858|r 401 IQGLIKNFRPLIEERIDQYH 420 (425)
Q Consensus 401 v~s~l~~F~dEfe~hI~~~~ 420 (425)
++++++|||+|+|+++.+++
T Consensus 450 vqgliR~Fr~~ie~R~~~~a 469 (478)
T KOG2658 450 VQGLIRHFRPEIEERMKKRA 469 (478)
T ss_pred HHHHHHHCCHHHHHHHHHHH
T ss_conf 57787757698999999998
No 7
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=100.00 E-value=0 Score=433.27 Aligned_cols=318 Identities=22% Similarity=0.363 Sum_probs=248.4
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99826989999999983977687571124556874235656886199985767784860048999862589999999999
Q gi|254780858|r 34 KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113 (425)
Q Consensus 34 ~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a 113 (425)
+.-++++++|++.|++|||+|+|||+||||+|++.-+ ..+.++||+||+|||||++.|+.||++++++||+|+.|.+
T Consensus 118 ~~~~l~~~~i~~~I~~AGIvGlGGAtFPthvKL~~pp---~~~~~~LIiNGAECEPYlT~DdrLMrEra~eI~~GI~I~~ 194 (444)
T TIGR01945 118 DESSLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPP---EKKVELLIINGAECEPYLTCDDRLMRERAEEIIQGIRILL 194 (444)
T ss_pred CHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC---CCCCEEEEEECEECCCCCCCCCHHHHCCHHHHHHHHHHHH
T ss_conf 7331487999999997086556755201011038586---5521078980433386546142233317578999999999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 97183638998155517899999999999986899776767886640699745751001107889986308999868889
Q gi|254780858|r 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193 (425)
Q Consensus 114 ~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kP 193 (425)
++++.+++||+|+||+|+||++|++|+++.. .. .-+|+|+..+..||+|-|++||++|+|+ -+|+..
T Consensus 195 ~~L~~~~~viGIEDNKpeAI~al~~a~~~~~--------~P---t~~i~v~vlpTkYPqGgEKQLI~~lTgr-eVPsG~- 261 (444)
T TIGR01945 195 KILGVKKVVIGIEDNKPEAIAALKKALEGYP--------KP---TKNIKVRVLPTKYPQGGEKQLIKALTGR-EVPSGG- 261 (444)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHCCC--------CC---CCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCCC-
T ss_conf 9718986999865795799999999860278--------88---7754788841228986078899998345-078888-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 986227830378500028999999999960568886338987743047642678-8787268935898799999986155
Q gi|254780858|r 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272 (425)
Q Consensus 194 P~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG 272 (425)
+|+++|+ ||+||.|+++|..++.+|... -.|++||||+ |+||.||+|++|||+.+||+ +|||
T Consensus 262 -LP~d~Gv-----vvqNVGT~~Ai~~Av~~G~PL----------ieRvVTVtG~~i~~P~N~~v~IGTPV~~~l~-~cGg 324 (444)
T TIGR01945 262 -LPADIGV-----VVQNVGTAFAIKEAVVNGKPL----------IERVVTVTGDAIRRPKNLWVLIGTPVSDILA-HCGG 324 (444)
T ss_pred -CCHHCCE-----EEECHHHHHHHHHHHHCCCCC----------EEEEEEEECCCCCCCCCEEEECCCCHHHHHH-HCCC
T ss_conf -8312144-----456067899999998678961----------2566875141327887668855885799998-7187
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHH-HHHHHHHHHHCCCCC-C
Q ss_conf 67871100489852456565321002456334220110387346651799428652899999-999999876279988-5
Q gi|254780858|r 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW-RLSVFYKHESCGQCT-P 350 (425)
Q Consensus 273 ~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~-~~~~F~a~ESCGkCt-P 350 (425)
..+...+ +++||||||+=-. +++ +|+ .-||.+|.+++.. ++.. +-. -+-=+||+|. -
T Consensus 325 ~~~~~~r---~i~GGPMMG~al~-~~~-vPv----------~KGtsGiLal~~~----E~~~~~~~--~~CIRCg~Cv~~ 383 (444)
T TIGR01945 325 FREKTER---LIMGGPMMGLALP-SLD-VPV----------TKGTSGILALDKE----ELTEPKPE--KPCIRCGKCVNV 383 (444)
T ss_pred CCCCCCC---EEEECCCCCCCCC-CCC-CCE----------EECCCCEECCCCC----CCCCCCCC--CCCCCHHCCCCC
T ss_conf 7577887---5740786676578-888-667----------7225400035701----16787466--788440010155
Q ss_pred CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHCHHHHH
Q ss_conf 23028-999999999982899989999999999--8622366677650247999999863889999
Q gi|254780858|r 351 CREGT-GWMMRVMERLVKGIAQKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413 (425)
Q Consensus 351 CR~Gt-~~l~~il~~i~~G~a~~~Dl~~L~~la--~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe 413 (425)
|=.++ ++....+ +..++.|.+.+.. |=|..+ -|++--=|..|+...+|.=+.++.
T Consensus 384 CPm~L~P~~L~~~-------A~~~~~d~~~~~~L~DCIECG-~C~Y~CPs~iPLV~Y~R~aK~~~~ 441 (444)
T TIGR01945 384 CPMGLLPQQLNWL-------AKADEFDEAAEHNLMDCIECG-SCSYVCPSNIPLVQYIRQAKAKLR 441 (444)
T ss_pred CCCCCHHHHHHHH-------HHHHHHHHHHHCCCCEEEECC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6744227999987-------531016889963881466125-665428775258999988789861
No 8
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=100.00 E-value=0 Score=403.56 Aligned_cols=316 Identities=22% Similarity=0.295 Sum_probs=242.5
Q ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82698999999998397768757112455687423565688619998576778486004899986258999999999997
Q gi|254780858|r 36 LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115 (425)
Q Consensus 36 l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a 115 (425)
..++++++++.|+++||+|+||||||||+||+. ...++++||+||+|||||++.|+.||++.++.||+|+.|.+++
T Consensus 129 ~~~~~~el~~~I~~AGIvGlGGAgFPT~vKL~p----~~~~idtLIINgaECEPYIT~DdrLM~E~a~eIi~Gi~Il~~~ 204 (725)
T PRK05035 129 RSLSREELIERIRQAGIAGLGGAGFPTAIKLQP----GGDKIETLIINGAECEPYITADDRLMRERADEILEGIRILAHI 204 (725)
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCC----CCCCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 448999999999975943468888861131268----8887758997351356424016999988899999999999998
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 18363899815551789999999999998689977676788664069974575100110788998630899986888998
Q gi|254780858|r 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195 (425)
Q Consensus 116 ~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~ 195 (425)
+++++++|+|++|+|++|+.|++++... -+|+|+..+..||+|.|+.||+.++|+. +|..+ +
T Consensus 205 l~~~~~iIgIEdNKPeAI~al~~a~~~~---------------~~i~V~~lptkYPqGgEKqLI~~lTGre-VP~G~--l 266 (725)
T PRK05035 205 LQPKEVLIGIEDNKPEAIAALRAALAGA---------------DDIRVRVIPTKYPSGGEKQLIQILTGKE-VPSGG--R 266 (725)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHCCC---------------CCEEEEECCCCCCCCHHHHHHHHHHCCC-CCCCC--C
T ss_conf 3998799998389899999999974669---------------9859998178799948999999994974-68999--8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 6227830378500028999999999960568886338987743047642678-878726893589879999998615567
Q gi|254780858|r 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274 (425)
Q Consensus 196 p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG~~ 274 (425)
|+++|+ +|+||.|.++|...+.+|-... .|++||||+ |++|+||+|++|||+++||+ +|||..
T Consensus 267 PadvGv-----vv~NVgTa~AI~~Av~~G~PLi----------eRvVTVTG~av~~P~N~~v~iGTPv~~Ll~-~~Gg~~ 330 (725)
T PRK05035 267 PADIGV-----LMQNVGTAYAIKRAVIDGEPLI----------ERVVTLTGEAVARPGNVWARLGTPVRHLLN-QAGFKP 330 (725)
T ss_pred CCCCCE-----EEECHHHHHHHHHHHHCCCCEE----------EEEEEEECCCCCCCCEEEEECCCCHHHHHH-HCCCCC
T ss_conf 765665-----9866899999999997499746----------899997467548997289979995999999-749988
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-CCCC
Q ss_conf 871100489852456565321002456334220110387346651799428652899999999999876279988-5230
Q gi|254780858|r 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT-PCRE 353 (425)
Q Consensus 275 ~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCt-PCR~ 353 (425)
+...+ |++||||||+--++ ++ .|+ .-||.+|++++.+.-.... .-...-.||+|. -|-.
T Consensus 331 ~~~~k---vImGGPMMG~~l~~-ld-vPV----------~K~Tn~ILa~~~~e~~~~~-----~e~~CIRCG~Cv~aCP~ 390 (725)
T PRK05035 331 DADQR---VIMGGPMMGFTLPD-LD-VPV----------VKTTNCLLAPSATELPPPP-----PEQACIRCGACADACPA 390 (725)
T ss_pred CCCCE---EEECCCCCCCCCCC-CC-CCC----------EECCEEEEECCHHHCCCCC-----CCCCCCCCCHHHHHCCC
T ss_conf 88875---88458975762788-99-870----------3054069962877748888-----88777525136763899
Q ss_pred HH-HHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 28-99999999998289998999999999--986223666776502479999998638899999986
Q gi|254780858|r 354 GT-GWMMRVMERLVKGIAQKREIDLLYEV--SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 (425)
Q Consensus 354 Gt-~~l~~il~~i~~G~a~~~Dl~~L~~l--a~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~ 417 (425)
++ ++...-+ .+ ..|.+.+++. .+=|. =..|.+---+..|+....++=+.|+.+.-+
T Consensus 391 ~LlPqqL~w~---ak----~~~~dka~~~~l~DCIE-CG~CaYVCPS~IPLVqYyR~aK~eI~~~~~ 449 (725)
T PRK05035 391 SLLPQQLYWF---AK----AEEHDKAEEHNLFDCIE-CGACAYVCPSNIPLVQYYRQAKAEIRAIEQ 449 (725)
T ss_pred CCCHHHHHHH---HH----CCCHHHHHHCCCCCCCC-CCCCCEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7779999999---87----67799998679963600-287762689888489999999999999999
No 9
>pfam01512 Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd subunit.
Probab=100.00 E-value=0 Score=346.46 Aligned_cols=149 Identities=46% Similarity=0.724 Sum_probs=137.9
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99839776875711245568742356568861999857677848600489998625899999999999718363899815
Q gi|254780858|r 47 VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 (425)
Q Consensus 47 v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir 126 (425)
|++|||+||||||||||+||+...+ ..++||||||+||||++|+||+||+++||+||||+.|+++++||++++||||
T Consensus 1 i~~agivG~GGAgFPt~~Kl~~~~~---~~~~~livN~~EcEP~~~~D~~lm~~~p~~vl~G~~i~~~a~ga~~~~I~I~ 77 (150)
T pfam01512 1 IKEAGIVGRGGAGFPTHVKLSPPAD---KKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGILIAAYALGAKKGVIGIE 77 (150)
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCC---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9401546676665300122346657---8997899967879843579823788758999999999999859898999982
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55178999999999999868997767678866406997457510011078899863089998688899862278303785
Q gi|254780858|r 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206 (425)
Q Consensus 127 ~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT 206 (425)
++|++++++|++||++++..+ +|+|+.++++||||||++||++++|+ ..||.+| |+++|+
T Consensus 78 ~~~~~ai~~l~~ai~~~~~~~------------~i~V~~~~~~Yp~GeE~~Li~~l~Gr-~vP~~~~--P~~~G~----- 137 (150)
T pfam01512 78 DNKPEAIAALEKAIAEAPAAG------------DIEVVLLPGKYPCGEEKALIYSLTGR-EVPRGGL--PADVGV----- 137 (150)
T ss_pred CCCHHHHHHHHHHHHHHHHCC------------CEEEEECCCCCCCCHHHHHHHHHHCC-CCCCCCC--CCCCCE-----
T ss_conf 688999999999999666639------------88999899867546799999998699-7798979--865785-----
Q ss_pred CCCCHHHHHHHH
Q ss_conf 000289999999
Q gi|254780858|r 207 TVNNVESIAVVP 218 (425)
Q Consensus 207 ~V~NVeTla~v~ 218 (425)
+||||||+++|+
T Consensus 138 vV~NVeT~~~V~ 149 (150)
T pfam01512 138 VVNNVETLAAVP 149 (150)
T ss_pred EEECHHHHHHCC
T ss_conf 998589984265
No 10
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=100.00 E-value=0 Score=330.41 Aligned_cols=330 Identities=22% Similarity=0.341 Sum_probs=246.0
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 67798999977998999999826989999999983977687571124556874235656886199985767784860048
Q gi|254780858|r 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 (425)
Q Consensus 16 ~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr 95 (425)
++.+.+.|...--.+.++ .++|+++++.|+++|++|.|||+||||+|+..- ..+.+++|+||+||||++..|.
T Consensus 101 ~~d~~~~w~e~~p~~~~~---~~s~e~Lle~I~qAGIvg~gga~fpT~~Kl~~~----~~ki~~LIinaaecEp~~~~d~ 173 (529)
T COG4656 101 QGDGLDQWIELQPIEDFE---GASPEELLEKIKQAGIVGLGGAGFPTAVKLQAG----CKKIETLIINAAECEPYITADD 173 (529)
T ss_pred CCCCHHHHHHCCCCCCHH---HCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCC----CCCEEEEEEEHHCCCCCCCHHH
T ss_conf 575154442037774032---279999999999809564377778614442554----0300036663100576643768
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99986258999999999997183638998155517899999999999986899776767886640699745751001107
Q gi|254780858|r 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEE 175 (425)
Q Consensus 96 ~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeE 175 (425)
+||.+.++.|++|+.|.++.+++++.+|+|+++||+++..++.++... .+|.++..+..||.|.|
T Consensus 174 ~LM~e~a~eI~~Gi~il~~i~~~~~~vIaied~kp~ai~~l~~a~~~~---------------~~i~I~~lp~kYP~g~~ 238 (529)
T COG4656 174 RLMREHAEEIVKGIQILRKILKPKEVVIAIEDNKPEAIAALRAALFGD---------------RDIKIHVLPTKYPSGGE 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCC---------------CCEEEEECCCCCCCCHH
T ss_conf 999998999999999999751650479987459778899999974358---------------74499976777898218
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEE
Q ss_conf 889986308999868889986227830378500028999999999960568886338987743047642678-8787268
Q gi|254780858|r 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254 (425)
Q Consensus 176 tali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~ 254 (425)
..||..++|+. +|... +|+++|+ +|+||+|+++|..++.+|... -.|.+||+|+ |++|+++
T Consensus 239 k~li~~ltgr~-vP~g~--lp~~vgv-----lv~NV~T~~aV~~AIv~~~Pl----------ier~vTltG~av~~p~nv 300 (529)
T COG4656 239 KQLIKILTGRE-VPKGG--LPSDVGV-----LVQNVGTAYAVKRAIVDGKPL----------IERVVTLTGDAVKRPKNV 300 (529)
T ss_pred HHHHHHHHCCC-CCCCC--CCCCCCE-----EEECHHHHHHHHHHHHCCCCE----------EEEEEEEECCCCCCCCEE
T ss_conf 88999974883-88888--8864457-----983558899999998659971----------799998514121688608
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 93589879999998615567871100489852456565321002456334220110387346651799428652899999
Q gi|254780858|r 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334 (425)
Q Consensus 255 evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~ 334 (425)
+|++|||++++|+ .|||..+.... |++||||||+.-. .|| .|+ .-++.+++|.++.--.-....
T Consensus 301 ~VrIGTP~~~lL~-~~G~~~~~~~~---vi~gGPmmG~~l~-~ld-~PV----------tK~t~~Ll~~~~~e~~~~~~~ 364 (529)
T COG4656 301 WVRIGTPVSQLLN-EAGGIDTKPYR---VIMGGPMMGFKLP-TLD-APV----------TKTTNGLLALTKKELLEPIKE 364 (529)
T ss_pred EEECCCCHHHHHH-HCCCCCCCCCE---EEECCCCCCCCCC-CCC-CCE----------ECCCCEEEECCCCCCCCCCHH
T ss_conf 9977894999999-74897678751---7846875564144-567-764----------614443784373234663010
Q ss_pred HHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHH
Q ss_conf 9999998762799885230289--99999999982899989999999999862236667765024799999986388999
Q gi|254780858|r 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412 (425)
Q Consensus 335 ~~~~F~a~ESCGkCtPCR~Gt~--~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEf 412 (425)
. ||=+|.-|-.=.+ .+-..|.....+ ...|-.....+-+-+. -.+|+.---+..|+ .++|+.+.
T Consensus 365 q--------sCi~C~~C~d~CP~~Llp~ql~~~a~~--~~~~e~~~~~l~dCIE-Cg~Ca~vCPs~ipl---vq~~r~~K 430 (529)
T COG4656 365 Q--------SCIRCSLCADACPVNLLPQQLYWFAKG--EQHDEEEEHNLLDCIE-CGACAYVCPSNIPL---VQYFRQEK 430 (529)
T ss_pred H--------CCCCHHHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH-HCCCHHCCCCCCCH---HHHHHHHH
T ss_conf 1--------150477787747512588886677654--2456888877665255-07311007777888---99999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780858|r 413 EER 415 (425)
Q Consensus 413 e~h 415 (425)
..-
T Consensus 431 a~i 433 (529)
T COG4656 431 AEI 433 (529)
T ss_pred HHH
T ss_conf 999
No 11
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=99.86 E-value=1.1e-20 Score=159.44 Aligned_cols=297 Identities=17% Similarity=0.233 Sum_probs=190.0
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98269899999999839776875711245568742356568861999857677848600489998625899999999999
Q gi|254780858|r 35 ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114 (425)
Q Consensus 35 ~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~ 114 (425)
..++++++|++.+.+||+ ++.|+|.- +..++ .+...|+.+++||.||||++..++++|+++...++.|+.+.++
T Consensus 111 ~~~ls~e~i~~~L~~sGl----w~~~rqRP-f~~ia-~p~~~P~~IfIna~d~~Pl~~d~~~il~~~~~~f~~Gi~iL~k 184 (448)
T PRK05352 111 LASLSREQVKENLLESGL----WTALRTRP-FSKVP-APDSTPRAIFVTAMDTNPLAADPEVIIAEQSEAFQAGLTVLAR 184 (448)
T ss_pred HHHCCHHHHHHHHHHCCC----CCCCCCCC-CCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 435699999999986698----62225645-55368-9878876599976568878889799998779999999999998
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 71836389981555178999999999999868997767678866406997457510011078899863089998688899
Q gi|254780858|r 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194 (425)
Q Consensus 115 a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP 194 (425)
... .+.++.+..+....... .-+++++..+|.||+|-+..+|+.|.
T Consensus 185 Lt~-~~v~l~~~~~~~~~~~~----------------------~~~v~~~~~~GphPaG~~g~~Ih~i~----------- 230 (448)
T PRK05352 185 LTE-GKVHVCKADGAALPGEN----------------------LANVEVHEFAGPHPAGLVGTHIHFLD----------- 230 (448)
T ss_pred HCC-CCEEEEECCCCCCCCCC----------------------CCCEEEEEECCCCCCCCHHHHEEEEC-----------
T ss_conf 618-97699954897654223----------------------57728998179899998132044676-----------
Q ss_pred CCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 86227830378500--028999999999960568886338987743047642678-878726893589879999998615
Q gi|254780858|r 195 FPANVGLYGCPTTV--NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCG 271 (425)
Q Consensus 195 ~p~~~Gl~g~PT~V--~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~G 271 (425)
|+..|- +| -|++++++|...+..|. ..-+|++||+|. |++|++|++.+|+++.+|+. |
T Consensus 231 -Pi~~g~-----~VW~i~~qdVi~Ig~~~~~G~----------~~~~RvVtv~G~~v~~P~~~~t~iGa~v~~ll~---g 291 (448)
T PRK05352 231 -PVSAGK-----TVWTIGYQDVIAIGKLFLTGE----------LYTERVVALAGPAVKKPRLVRTRLGASLSELTA---G 291 (448)
T ss_pred -CCCCCC-----EEEECCHHHHHHHHHHHHCCC----------CCCEEEEEEECCCCCCCCEEEEECCCCHHHHHC---C
T ss_conf -888777-----469715888999999997498----------676589997368667883599968971999966---7
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC--HHHHH----------HHHHH-
Q ss_conf 567871100489852456565321002456334220110387346651799428652--89999----------99999-
Q gi|254780858|r 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD--IIKAI----------WRLSV- 338 (425)
Q Consensus 272 G~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~--iv~~~----------~~~~~- 338 (425)
....+.. + +|.||+++|.--... +..|.| -+..|.|+.|... +..++ +-++.
T Consensus 292 ~~~~~~~--R-iIsG~vL~G~~~~~~--~~~LG~----------y~~qvtvipe~~~~e~~Gw~~Pg~~k~S~~~~~~S~ 356 (448)
T PRK05352 292 ELKAGEV--R-VISGSVLSGRTASGP--HAYLGR----------YHNQVSVLPEGREREFFGWLRPGSNKFSITRTYLSH 356 (448)
T ss_pred CCCCCCE--E-EEECCCCCCEECCCC--CCCCCC----------CCCEEEEECCCCCHHCCCCCCCCCCCCCCCCEEEEH
T ss_conf 7777870--6-995676434151577--775345----------554226603787121101335788765412145400
Q ss_pred HHH-H-----------H----HCCCCC---CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHC-CCCCCCCCHH
Q ss_conf 998-7-----------6----279988---523028999999999982899989999999999--8622-3666776502
Q gi|254780858|r 339 FYK-H-----------E----SCGQCT---PCREGTGWMMRVMERLVKGIAQKREIDLLYEVS--KNIE-GRTICALGDA 396 (425)
Q Consensus 339 F~a-~-----------E----SCGkCt---PCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la--~~i~-~~S~C~lG~~ 396 (425)
|+- . | -||.|- |=..=-.+|. ..+.. .|+|.++++. +.+. +=++|.+-..
T Consensus 357 l~~~~~~~~~t~~nG~~Ra~I~~g~~e~v~P~di~P~qL~---ka~~~-----~d~e~~e~lGi~e~~eED~alcsyvCp 428 (448)
T PRK05352 357 LFKKKLFNFTTSTNGSERAMVPIGNYERVMPLDILPTLLL---RALIA-----GDTDEAQALGALELDEEDLALCTFVCP 428 (448)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCCCHHHHH---HHHHC-----CCHHHHHHCCCCCCCHHHCCEEEEECC
T ss_conf 1467767875666886443788674764278856899999---99870-----699999875990338536414645888
Q ss_pred HHHHHHHHHHHCHHHHH
Q ss_conf 47999999863889999
Q gi|254780858|r 397 AAWPIQGLIKNFRPLIE 413 (425)
Q Consensus 397 a~~pv~s~l~~F~dEfe 413 (425)
+-..+.+.||.=-|.++
T Consensus 429 SK~e~~~i~r~~L~~~~ 445 (448)
T PRK05352 429 GKYEYGPILRDCLDRIE 445 (448)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 61248999999999997
No 12
>pfam10589 NADH_4Fe-4S NADH-ubiquinone oxidoreductase-F iron-sulfur binding region.
Probab=99.52 E-value=5.6e-15 Score=120.99 Aligned_cols=46 Identities=41% Similarity=1.050 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999987627998852302899999999998289998999
Q gi|254780858|r 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375 (425)
Q Consensus 330 v~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl 375 (425)
|++++++++||++||||||||||+||+|+.++|++|.+|+++++|+
T Consensus 1 v~~a~~~~~F~~~ESCGqC~PCR~Gt~~l~~~l~~i~~G~~~~~dl 46 (46)
T pfam10589 1 VAVARRLAEFFAHESCGKCTPCREGTKWLAEILDRIEEGKGTEEDL 46 (46)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9899999999751558999884051999999999998499982619
No 13
>pfam10531 SLBB SLBB domain.
Probab=98.79 E-value=6.5e-09 Score=80.08 Aligned_cols=52 Identities=33% Similarity=0.506 Sum_probs=44.2
Q ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 76426788787268935898799999986155678711004898524565653
Q gi|254780858|r 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293 (425)
Q Consensus 241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l 293 (425)
+++|+|+|+||++||++.|||++|+|+.++|+...+ ..+|++++||++++++
T Consensus 1 ~v~V~G~V~~Pg~~~~~~G~~~~~~l~~aGG~~~~~-~~~~~~~~gG~~~~~~ 52 (52)
T pfam10531 1 VVTVSGEVKRPGNYEVPIGTTLSDLIEQAGGLTDDA-RRLKRVIPGGPMMGIL 52 (52)
T ss_pred CEEEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCC-CCCCEEEECCCCCCCC
T ss_conf 999898977970799869799999999857998873-6211899798865649
No 14
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=96.97 E-value=0.0059 Score=39.89 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=156.0
Q ss_pred HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC--CCCCCEEEEEECCCCCCCCCCCHHHHHHHHH------HHHHH
Q ss_conf 269899999999839776875711245568742356--5688619998576778486004899986258------99999
Q gi|254780858|r 37 EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPH------TLIEG 108 (425)
Q Consensus 37 ~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~--~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~------~vieG 108 (425)
+++.++|.+.+.+|||=+. .|-|.-.+. +...|+=|=||+..-.|.+-.=..++...-. .+.-|
T Consensus 112 ~Ls~~~~~~~l~~sGLw~~--------~k~RPFd~va~p~~~p~~iFi~a~Dt~Plap~~~~~~~~~s~~E~G~Y~f~~G 183 (466)
T TIGR01936 112 TLSAEQIKELLLESGLWTA--------LKQRPFDIVATPDSSPRDIFITAADTRPLAPDPEVVLAEFSEKEEGYYAFVAG 183 (466)
T ss_pred HCCHHHHHHHHHHHHHHHH--------HHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 0378999999874005767--------65088888866888722057730057689988023352245543413566789
Q ss_pred HHHHHHHHC-CCEEEEEE-CCCCHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 999999718-36389981-55517899-9999999999868997767678866406997457510011078899863089
Q gi|254780858|r 109 CVIASFAIG-AHCAFIYV-RGEFIRER-ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185 (425)
Q Consensus 109 ~~i~a~a~g-A~~~~I~i-r~ey~~~~-~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~ 185 (425)
+...++..+ ..+.||.. ++.-...- +.+ -.+++|...|-+|+|.-..+|+.+.
T Consensus 184 ~~alakL~~G~~k~~~~~k~~~~~lP~~e~~----------------------~~~~~~~~~GPhPaG~~g~hIh~~~-- 239 (466)
T TIGR01936 184 LDALAKLFTGSLKVHVCKKADRLSLPTQELL----------------------SNAEIHTVSGPHPAGLPGTHIHFIA-- 239 (466)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCHHHC----------------------CCEEEEEEECCCCCCCCCEEEEEEC--
T ss_conf 9999987279964279970488757721210----------------------6615899526658986230345304--
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCC--EEEEECCCCC
Q ss_conf 99868889986227-830378500028999999999960568886338987743047642678-8787--2689358987
Q gi|254780858|r 186 KGQPRLKPPFPANV-GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYP--CTVEESMSIT 261 (425)
Q Consensus 186 r~~Pr~kPP~p~~~-Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~P--g~~evp~Gt~ 261 (425)
|.-.+. -+| - -|-.-+-+|..++..|.-|.. |+++++|. |+.| ..+..-+|.+
T Consensus 240 --------Pi~~~~~~Vw----~-l~~qDvi~iG~LfltG~~~~~----------rviaLAG~~~~~~~RryVrt~~GA~ 296 (466)
T TIGR01936 240 --------PIGAEKEVVW----T-LNYQDVIAIGKLFLTGELLTE----------RVIALAGPAVKKPLRRYVRTTKGAN 296 (466)
T ss_pred --------CCCCCCCEEE----E-EEEEEEEEECCHHHCCEEEEE----------EEEEEECCCCCCCCCCEEEEECCCC
T ss_conf --------3258863589----8-741132320102212243115----------6777306401113466278723776
Q ss_pred HHHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9999998615567-871100489852456565321002456334220110387346651799428652899999999
Q gi|254780858|r 262 FDELIEKHCGGIR-GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337 (425)
Q Consensus 262 l~eli~~~~GG~~-~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~ 337 (425)
|.+++..- =+. ++..+ +|.|-+.+|-+-.++-+ +-|. .+ +-.|.|+.+.++--+...+++
T Consensus 297 l~~l~~~~--~~~k~~~~r---~IsG~vLtG~~~~~~~~-PyLG---~r-------~~qisvl~eg~d~~E~F~~~~ 357 (466)
T TIGR01936 297 LSQLLPGE--LTSKEGENR---LISGSVLTGRLAKKEEA-PYLG---RR-------DLQISVLPEGDDKRELFGWLR 357 (466)
T ss_pred HHHHCCCC--CCCCCCCCE---EEECCCCCCCCCCCCCC-CCCC---CC-------CCEEEEECCCCCCHHHHHHHH
T ss_conf 68822433--553357725---88678776723366788-7265---20-------144666268797403466676
No 15
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=96.61 E-value=0.052 Score=33.55 Aligned_cols=203 Identities=16% Similarity=0.252 Sum_probs=131.0
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC--CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999826989999999983977687571124556874235--65688619998576778486004899986258999999
Q gi|254780858|r 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109 (425)
Q Consensus 32 l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~--~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~ 109 (425)
++..-.++-++|...+.+|||- |..|-+...+ .+...|+-+-+|+..-.|.+-.-...+........-|+
T Consensus 107 ~~~L~~l~~eeV~~~l~~sGLw--------talrtRPFsk~p~p~s~p~~iFvnamDt~Plaadp~vvi~~~s~~F~~Gl 178 (447)
T COG1726 107 LEQLAQLSLEEVRKNLIESGLW--------TALRTRPFSKVPAPDSTPRAIFVNAMDTNPLAADPEVVIAEFSEAFVVGL 178 (447)
T ss_pred HHHHHHCCHHHHHHHHHHHHHH--------HHHHCCCCCCCCCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8887222699999887760378--------88751888778899988066433301379899973869988888999899
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999718363899815551789999999999998689977676788664069974575100110788998630899986
Q gi|254780858|r 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189 (425)
Q Consensus 110 ~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~P 189 (425)
...++..+-+ ++-.++.-.. +-+.. .-.+++|.-.|-.|+|-..--|..|+
T Consensus 179 ~vlsrL~~~k--~~vcka~~~~----~~~~~-----------------~~~~~~h~f~GPhPaGl~gtHIHfi~------ 229 (447)
T COG1726 179 TVLSRLFGLK--HHVCKAAGTL----PPQEL-----------------LSNAHLHEFSGPHPAGLPGTHIHFIA------ 229 (447)
T ss_pred HHHHHHHCCE--EEEECCCCCC----CCHHH-----------------HCCEEEEECCCCCCCCCCCCEEEEEC------
T ss_conf 9999872661--8998056778----98122-----------------03503664268788898754057751------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHH
Q ss_conf 8889986227830378500028999999999960568886338987743047642678-878726893589879999998
Q gi|254780858|r 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268 (425)
Q Consensus 190 r~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~ 268 (425)
|.-+..=+| - -|-.-+-+|..+...|--| +.|++++.|. |++|-.+.-.+|.++.+|+.
T Consensus 230 ----pv~~~k~Vw----~-inyQDViaIG~LF~tG~l~----------~erVvaLAGp~v~~prlvrT~~GAsls~L~~- 289 (447)
T COG1726 230 ----PVGATKVVW----T-INYQDVIAIGKLFLTGELL----------TERVVALAGPQVNKPRLVRTVLGASLSQLTA- 289 (447)
T ss_pred ----CCCCCEEEE----E-EEHHHHHHHHHHHHCCEEE----------HHHHEECCCCCCCCCEEEEEECCCCHHHHCC-
T ss_conf ----245752799----9-5235455535452113320----------3200100367778853798632677888501-
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 6155678711004898524565653210
Q gi|254780858|r 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 (425)
Q Consensus 269 ~~GG~~~~~~~~kav~~GG~~~g~l~~~ 296 (425)
+-..++..+ +|.|-+.+|-+...
T Consensus 290 --~~l~~g~nr---lISGsvL~G~~~~~ 312 (447)
T COG1726 290 --GELKSGENR---LISGSVLTGRLAKG 312 (447)
T ss_pred --CCCCCCCCE---EEECCCCCCCCCCC
T ss_conf --355589721---88357556710168
No 16
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=94.65 E-value=0.11 Score=31.47 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=50.2
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCC-----CC
Q ss_conf 4764267887872689358987999999861556787110048985245656532100245633422011038-----73
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG-----SG 314 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~G-----s~ 314 (425)
+-++|.|.|++||.|.+.-++++-|.|. .|||+......-+..+.-...+.- ...++|+.++-..| -.
T Consensus 79 ~~V~V~G~V~~Pg~~~~~~~~tl~~al~-~AGG~~~~a~~~~i~i~R~~~g~~------~~~~vdl~~~l~~g~~~~n~~ 151 (165)
T TIGR03027 79 EQIRVVGAAANPQALPYREGMTLLDVMI-AVGGLTDFADGNRAVIVRTVDGEQ------KQISVRLKDLIKDGDVTANVE 151 (165)
T ss_pred EEEEEEEEECCCCEEECCCCCHHHHHHH-HCCCCCCCCCCCEEEEEEECCCCE------EEEEEEHHHHHHCCCCCCCCE
T ss_conf 7999981343782575488861999999-827998668875699999069977------999999999976698778947
Q ss_pred CCCCEEEEECCC
Q ss_conf 466517994286
Q gi|254780858|r 315 LGTAAVIVMDRS 326 (425)
Q Consensus 315 LGsg~iiV~de~ 326 (425)
|-.|-+|..+++
T Consensus 152 L~~GDvI~VP~s 163 (165)
T TIGR03027 152 LKPGDVLIIPES 163 (165)
T ss_pred ECCCCEEEECCC
T ss_conf 589999998166
No 17
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.30 E-value=0.08 Score=32.28 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=34.1
Q ss_pred EEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 764267887872689358987999999861556787110048985
Q gi|254780858|r 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285 (425)
Q Consensus 241 l~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~ 285 (425)
.+.|.|.|++||.|+..-++||.++|. .|||+..... .+.|.+
T Consensus 164 ~v~V~GeV~~Pg~y~~~~~~tl~~ai~-~AGG~~~~A~-~~~V~I 206 (239)
T TIGR03028 164 VFYIYGEVQRPGAYRLERNMTVMQALA-QGGGLTPRGT-ERGIRV 206 (239)
T ss_pred EEEEECCCCCCEEEECCCCCCHHHHHH-HCCCCCCCCC-CCCEEE
T ss_conf 069943345650785389998999998-7469985446-684299
No 18
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=93.38 E-value=0.69 Score=25.95 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=96.9
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCHHH--HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98269899999999839776875711245--5687423565688619998576778486004899986258999999999
Q gi|254780858|r 35 ILEKGRDWIINEVKASGLRGRGGAGFSTG--MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112 (425)
Q Consensus 35 ~l~~~~~~ii~~v~~sgl~GrGGAgFPt~--~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~ 112 (425)
.-.+++|+|.+.+.+||+- |.= +=++.++ .+...|+-+-+||...+|.+..=.++|+.+-..+-.|+.+.
T Consensus 110 ~~~ls~e~i~~~Ll~sGlW-------~~~rqRPf~~ia-~p~~~P~aIFIsa~dt~PLa~D~~~il~~~~~~F~~Gl~~L 181 (257)
T pfam05896 110 LSSLSREAVKENLLESGLW-------TALRTRPFSKVA-APDSTPKAIFVTAMDTNPLAADPEVIIAEQEEAFQAGLTAL 181 (257)
T ss_pred HHHCCHHHHHHHHHHCCCH-------HHHHCCCCCCCC-CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3247999999999866970-------675426464569-99897787999803588888997999876599999999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 99718363899815551789999999999998689977676788664069974575100110788998630899986888
Q gi|254780858|r 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192 (425)
Q Consensus 113 a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~k 192 (425)
.....- +.++.+..+....... .-+++++.-.|-||+|--...|+-|.
T Consensus 182 ~kLt~g-~v~l~~~~~~~~~~~~----------------------~~~v~~~~f~GPHPAGnvG~hIh~i~--------- 229 (257)
T pfam05896 182 SKLTDG-KVHVCKAPGAALPLAD----------------------LKGVELHEFSGPHPAGLVGTHIHFID--------- 229 (257)
T ss_pred HHHCCC-CEEEEECCCCCCCCCC----------------------CCCEEEEEECCCCCCCCHHHHEEECC---------
T ss_conf 997299-7799938998776556----------------------68769999559988978455123426---------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99862278303785000289999999999605
Q gi|254780858|r 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224 (425)
Q Consensus 193 PP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G 224 (425)
|. -...=+| .-|.+-+.++...+..|
T Consensus 230 Pi-n~~~~VW-----ti~~qdVi~IG~lf~tG 255 (257)
T pfam05896 230 PV-NAGKTVW-----TIGYQDVIAIGKLFLTG 255 (257)
T ss_pred CC-CCCCEEE-----EECHHHHHHHHHHHHCC
T ss_conf 89-8886179-----97699999999998738
No 19
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
Probab=93.01 E-value=0.11 Score=31.35 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.4
Q ss_pred EEEECCCCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCCCC
Q ss_conf 4764267887872689358-987999999861556787110
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESM-SITFDELIEKHCGGIRGGWDN 279 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~-Gt~l~eli~~~~GG~~~~~~~ 279 (425)
+-+.|+|+|++||.|+..- |.++.+.|. .+||+.....+
T Consensus 125 ~~v~V~GeV~~PG~y~~~~~~~tv~~ai~-~AGG~~~~~~~ 164 (239)
T COG1596 125 QKVFVSGEVKTPGQYPLTPRGLTVLDAIA-LAGGLTPRADK 164 (239)
T ss_pred CEEEEECCCCCCCEEECCCCCCHHHHHHH-HCCCCCCCCCC
T ss_conf 35998466788837861566758999999-60798633222
No 20
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.82 E-value=0.36 Score=27.86 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=46.5
Q ss_pred EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCC-----C
Q ss_conf 04764267887872689358987999999861556787110048985245656532100245633422011038-----7
Q gi|254780858|r 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG-----S 313 (425)
Q Consensus 239 tkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~G-----s 313 (425)
+.-++|+|.|++||.|.+.-..++.+.|. .|||+......+. .+.--..+... . ..+|+..+...| -
T Consensus 78 ~~~V~V~G~V~~PG~y~l~~~~tl~~al~-~AGG~~~~~~~~~-~~~~~r~g~~~-----~-~~idl~~l~~~g~~~~ni 149 (239)
T TIGR03028 78 GQQVSVLGQVNRPGRYPLETAGRVSDVLA-LAGGVTPDGADVI-TLVREREGKIF-----R-KQIDFPALFNPGGDNENI 149 (239)
T ss_pred CEEEEEECCCCCCEEEECCCCCHHHHHHH-HCCCCCCCCCCEE-EEEEEECCEEE-----E-EEECHHHHHHCCCCCCCE
T ss_conf 35899981334650788488762999999-7279997666237-99998799589-----9-886489985267765531
Q ss_pred CCCCCEEEEECC
Q ss_conf 346651799428
Q gi|254780858|r 314 GLGTAAVIVMDR 325 (425)
Q Consensus 314 ~LGsg~iiV~de 325 (425)
.|-.|-+|.++.
T Consensus 150 ~L~~GD~I~V~~ 161 (239)
T TIGR03028 150 LVAGGDIIYVDR 161 (239)
T ss_pred ECCCCCEEEECC
T ss_conf 317999899726
No 21
>pfam11973 NQRA_SLBB NQRA C-terminal domain. This family consists of the C-terminal domain of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=91.66 E-value=0.36 Score=27.90 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=35.4
Q ss_pred EEECCCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 7642678-878726893589879999998615567871100489852456565
Q gi|254780858|r 241 LFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 (425)
Q Consensus 241 l~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~ 292 (425)
+++|+|. |++|..|+..+|.++.+|++ |-..++ ..+ +|.|.+..|-
T Consensus 1 vIal~G~~v~~P~y~~t~~Ga~i~~l~~---g~~~~~--~~R-iISG~vLtG~ 47 (51)
T pfam11973 1 VVALAGPAVKKPRLVRTRLGASLSELLA---GELKEG--NVR-VISGSVLTGR 47 (51)
T ss_pred CEEECCCCCCCCEEEEEECCCCHHHHHC---CCCCCC--CCE-EEECCCCCCC
T ss_conf 9886288889961899845977899866---676789--837-9978878675
No 22
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=86.18 E-value=0.19 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 9999718363899815551789999
Q gi|254780858|r 111 IASFAIGAHCAFIYVRGEFIRERES 135 (425)
Q Consensus 111 i~a~a~gA~~~~I~ir~ey~~~~~~ 135 (425)
-+|++.||+..+|-=..||.....+
T Consensus 179 AVAKa~GA~~Vi~~d~neyRleLAk 203 (341)
T TIGR00692 179 AVAKAAGARNVIVIDKNEYRLELAK 203 (341)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 9987727840599658647999998
No 23
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=80.83 E-value=1.1 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=6.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 79988523028999999999
Q gi|254780858|r 345 CGQCTPCREGTGWMMRVMER 364 (425)
Q Consensus 345 CGkCtPCR~Gt~~l~~il~~ 364 (425)
+.+|.|||.=|+.|.+..++
T Consensus 34 A~WCpPCr~FTP~L~~fY~~ 53 (146)
T cd03008 34 AVVSPQCQLFAPKLKDFFVR 53 (146)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 78681487677899999999
No 24
>KOG1145 consensus
Probab=76.15 E-value=6.2 Score=19.55 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=53.3
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHH------HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCHHHC
Q ss_conf 476426788787268935898799999------986155678711004898524565653210024563--342201103
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELI------EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI--MDYDGLKEM 311 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli------~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~--ld~~~l~~~ 311 (425)
-++||-|||.+-. |||-|-+ ..-+||++.. +-|+.+.=|+|..++. || +| .-|..|++.
T Consensus 154 PVVTiMGHVDHGK-------TTLLD~lRks~VAA~E~GGITQh---IGAF~V~~p~G~~iTF--LD-TPGHaAF~aMRaR 220 (683)
T KOG1145 154 PVVTIMGHVDHGK-------TTLLDALRKSSVAAGEAGGITQH---IGAFTVTLPSGKSITF--LD-TPGHAAFSAMRAR 220 (683)
T ss_pred CEEEEEECCCCCH-------HHHHHHHHHCCEEHHHCCCCCCE---ECEEEEECCCCCEEEE--EC-CCCHHHHHHHHHC
T ss_conf 8699860135770-------01998874072201323771000---0229996389977887--56-8747889999862
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8734665179942865289999999999987
Q gi|254780858|r 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342 (425)
Q Consensus 312 Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ 342 (425)
|+..--=.|+|..-++-+-.++...+++...
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~ 251 (683)
T KOG1145 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKS 251 (683)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6864447999997267756768999998876
No 25
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.03 E-value=0.55 Score=26.61 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 02899999999998289
Q gi|254780858|r 353 EGTGWMMRVMERLVKGI 369 (425)
Q Consensus 353 ~Gt~~l~~il~~i~~G~ 369 (425)
..+..+.+-++.+.+|+
T Consensus 342 ~~Le~INeaf~~m~~G~ 358 (366)
T COG1062 342 IPLEDINEAFDLMHEGK 358 (366)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 76899999998764782
No 26
>TIGR02375 pseudoazurin pseudoazurin; InterPro: IPR012745 Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related to plastocyanins. Several examples of pseudoazurin are encoded by a neighbouring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (IPR012746 from INTERPRO) of the same species.; GO: 0005507 copper ion binding.
Probab=73.92 E-value=1.9 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEC
Q ss_conf 862278303785000289999999999605688863389877430476426788787268935
Q gi|254780858|r 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257 (425)
Q Consensus 195 ~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~V~~Pg~~evp 257 (425)
.|+|.| ||||| |..++-.|++.|++--.+. ++|+ +..||||-+.
T Consensus 31 vPtDKG--------HNve~---iKgm~P~GA~~Fk~k~Ne~------~~vt--~~~eGvY~~k 74 (123)
T TIGR02375 31 VPTDKG--------HNVET---IKGMIPEGAEKFKSKINEE------YTVT--LTKEGVYGVK 74 (123)
T ss_pred ECCCCC--------CCHHC---CCCCCCCCHHHCCCCCCCC------EEEE--EECCCEEEEE
T ss_conf 528887--------67000---0233652212102557875------5888--6148525885
No 27
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=70.02 E-value=4.2 Score=20.70 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=10.8
Q ss_pred EEEE-E-CCCCCC-CCCCCHHHHHH
Q ss_conf 9998-5-767784-86004899986
Q gi|254780858|r 79 YLVV-N-ADESEP-GTCKDRDIMRH 100 (425)
Q Consensus 79 yvv~-N-~~E~EP-gt~kDr~Ll~~ 100 (425)
++.| | ..+++| |.|..-.++..
T Consensus 44 ~llC~~~~~~~~~Cg~C~sC~~~~~ 68 (342)
T PRK06964 44 GLLCETPQPNGEPCGTCAACTWFAQ 68 (342)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 9838999988897867777888862
No 28
>KOG2501 consensus
Probab=69.10 E-value=1.8 Score=23.21 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=14.4
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2799885230289999999999828
Q gi|254780858|r 344 SCGQCTPCREGTGWMMRVMERLVKG 368 (425)
Q Consensus 344 SCGkCtPCR~Gt~~l~~il~~i~~G 368 (425)
|.++|.|||.=|+.+.+..+++.+.
T Consensus 41 sA~wC~pCR~FTP~Lk~fYe~l~~~ 65 (157)
T KOG2501 41 SAHWCPPCRDFTPILKDFYEELKDN 65 (157)
T ss_pred EEEECCCHHHCCCHHHHHHHHHHHC
T ss_conf 8787783564886689999999736
No 29
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178 Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=65.96 E-value=3.2 Score=21.45 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=10.6
Q ss_pred CCCCCCCCC---------HHHHHHH
Q ss_conf 037850002---------8999999
Q gi|254780858|r 202 YGCPTTVNN---------VESIAVV 217 (425)
Q Consensus 202 ~g~PT~V~N---------VeTla~v 217 (425)
+||||=||| .|||+.+
T Consensus 64 HGKPTKVNnfWETSGLNILeTL~~L 88 (275)
T TIGR02812 64 HGKPTKVNNFWETSGLNILETLIRL 88 (275)
T ss_pred CCCCCCCCCHHHCCCCCHHHHHHHH
T ss_conf 8899862762430273578999861
No 30
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=60.99 E-value=13 Score=17.46 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCH
Q ss_conf 9999999862236667765024799999986388
Q gi|254780858|r 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409 (425)
Q Consensus 376 ~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~ 409 (425)
+.+.+....|++.+-|+-=+..++.=.--|+||+
T Consensus 363 d~~~~~i~v~~gA~~~g~~~~l~e~e~f~~EYW~ 396 (404)
T COG3347 363 DLYEDAIAVVRGAEALGYYTPLSEAELFDMEYWD 396 (404)
T ss_pred HHHHHHHHHHHCHHHHCCCCCCCHHHHCCCCCCC
T ss_conf 9999999985012343455567465521610165
No 31
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=58.35 E-value=6.8 Score=19.26 Aligned_cols=13 Identities=15% Similarity=0.039 Sum_probs=10.7
Q ss_pred EEEEEE--CCCCCCC
Q ss_conf 199985--7677848
Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425)
Q Consensus 78 ~yvv~N--~~E~EPg 90 (425)
|||++| |.-|.|.
T Consensus 19 K~vll~FWATWC~PC 33 (131)
T cd03009 19 KTVGLYFSASWCPPC 33 (131)
T ss_pred CEEEEEEECCCCHHH
T ss_conf 889999987578666
No 32
>PHA00330 putative replication initiation protein
Probab=58.12 E-value=5 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 51789999999999
Q gi|254780858|r 128 EFIRERESLQAAVD 141 (425)
Q Consensus 128 ey~~~~~~l~~ai~ 141 (425)
+...-+++|++.+.
T Consensus 105 ~~q~F~KRLRk~~~ 118 (317)
T PHA00330 105 HIRLFIKRLREYID 118 (317)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 79999999998740
No 33
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=56.69 E-value=10 Score=18.06 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=41.9
Q ss_pred EEEEECCCC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC---HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999857677-84-8600489998625899999999999718363899815551---789999999999998689977676
Q gi|254780858|r 79 YLVVNADES-EP-GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF---IRERESLQAAVDECYASGLLGSNS 153 (425)
Q Consensus 79 yvv~N~~E~-EP-gt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey---~~~~~~l~~ai~ea~~~g~lg~~~ 153 (425)
++.|-..++ +| |.|++-.++.+.-|- =+..|..|+ .--|+.+|+.++........|..
T Consensus 47 ~llC~~~~~~~~Cg~C~~C~l~~~~~HP----------------D~~~i~pe~~~~~I~IdqIR~l~~~~~~~~~~g~~- 109 (334)
T PRK07993 47 YLLCQQPQGHKSCGHCRGCQLMQAGTHP----------------DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGA- 109 (334)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHCCCCC----------------CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-
T ss_conf 9818999999999999789998668999----------------84775342234559999999999998436656994-
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 788664069974575100110788998630
Q gi|254780858|r 154 KLGYDVDIIVHHGAGAYICGEETALLESLE 183 (425)
Q Consensus 154 ~~g~~~~i~v~~g~g~Yi~GeEtali~sie 183 (425)
.+.+...+.+.--.-..||+..+|
T Consensus 110 ------kV~iI~~Ae~mn~~AaNaLLKtLE 133 (334)
T PRK07993 110 ------KVVWLPDAALLTDAAANALLKTLE 133 (334)
T ss_pred ------EEEEECCHHHHCHHHHHHHHHHHC
T ss_conf ------799976677759999999998612
No 34
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=56.68 E-value=3.1 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=11.9
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 999998397768757112455687
Q gi|254780858|r 44 INEVKASGLRGRGGAGFSTGMKWS 67 (425)
Q Consensus 44 i~~v~~sgl~GrGGAgFPt~~Kw~ 67 (425)
++....|-|.=.|.-.|-.-++|+
T Consensus 140 ~d~~~aApllCaGiT~y~alk~~~ 163 (339)
T COG1064 140 LDLAEAAPLLCAGITTYRALKKAN 163 (339)
T ss_pred CCHHHHHHHHCCEEEEEEEHHHCC
T ss_conf 986661154367005760046538
No 35
>PRK10083 putative dehydrogenase; Provisional
Probab=54.23 E-value=4.7 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCCCHH
Q ss_conf 9999999982899989
Q gi|254780858|r 358 MMRVMERLVKGIAQKR 373 (425)
Q Consensus 358 l~~il~~i~~G~a~~~ 373 (425)
..++++-+.+|+-.++
T Consensus 289 ~~~~~~li~~g~i~~~ 304 (339)
T PRK10083 289 FPVVIDWLAKGLIDPE 304 (339)
T ss_pred HHHHHHHHHCCCCCHH
T ss_conf 9999999985999915
No 36
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=52.36 E-value=2.2 Score=22.55 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE--ECCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 6258999999999997183638998--15551789-99999999999868997767678866406997457510011078
Q gi|254780858|r 100 HEPHTLIEGCVIASFAIGAHCAFIY--VRGEFIRE-RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176 (425)
Q Consensus 100 ~~p~~vieG~~i~a~a~gA~~~~I~--ir~ey~~~-~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Yi~GeEt 176 (425)
+.|..|-|.+ ..+|-+..+|- -||+-++. ...+-+.|+..++.+ + ...|+|-.. =-.|.+.
T Consensus 100 ~EP~rvAeaV----~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~---P------~t~iEvL~P---DF~G~~~ 163 (306)
T COG0320 100 DEPERVAEAV----KDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELN---P------QTTIEVLTP---DFRGNDD 163 (306)
T ss_pred CHHHHHHHHH----HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC---C------CCEEEEECC---CCCCCHH
T ss_conf 4278999999----9838986999753156665645689999999999639---9------964898386---5467899
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCC---CCCCEEEEECCCCCCCCEE
Q ss_conf 8998630899986888998622783037850002899999999996056888633898---7743047642678878726
Q gi|254780858|r 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE---NNRGTKLFSISGHVNYPCT 253 (425)
Q Consensus 177 ali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~---~~~Gtkl~tvsG~V~~Pg~ 253 (425)
+|-.-++-+ -++ .-|||||+.-+...++.|+...+++-.= +.-+..++|=||
T Consensus 164 al~~v~~~~-----------pdV-------~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSg------- 218 (306)
T COG0320 164 ALEIVADAG-----------PDV-------FNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSG------- 218 (306)
T ss_pred HHHHHHHCC-----------CCH-------HHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-------
T ss_conf 999998369-----------611-------0045200001142568987688899999999985898631121-------
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEC---CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 893589879999998615567871100489852---4565653210024563342201103873466
Q gi|254780858|r 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPG---GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317 (425)
Q Consensus 254 ~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~G---G~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGs 317 (425)
.-+-+|-+..|+++...- +..- .+..+-.| -||..-+|...+- .|-.|+.+...+-.+|-
T Consensus 219 iMlGLGEt~~Ev~e~m~D-Lr~~--gvdilTiGQYlqPS~~HlpV~ryv-~PeeF~~~~~~a~~~GF 281 (306)
T COG0320 219 LMVGLGETDEEVIEVMDD-LRSA--GVDILTIGQYLQPSRKHLPVQRYV-TPEEFDELEEVAEEMGF 281 (306)
T ss_pred EEEECCCCHHHHHHHHHH-HHHC--CCCEEEECCCCCCCCCCCCCEECC-CHHHHHHHHHHHHHCCC
T ss_conf 355057768999999999-9985--998997300147762458833211-88999999999997460
No 37
>COG1162 Predicted GTPases [General function prediction only]
Probab=49.88 E-value=19 Score=16.27 Aligned_cols=151 Identities=18% Similarity=0.283 Sum_probs=80.2
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-HHHHHCCCCCCCCCCC
Q ss_conf 199985767784860048999862589999999999971836389981555178999999999-9998689977676788
Q gi|254780858|r 78 HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV-DECYASGLLGSNSKLG 156 (425)
Q Consensus 78 ~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai-~ea~~~g~lg~~~~~g 156 (425)
-.+|+-+.+-++- -.+|+=.++++++-|++-.++-.+-+..+..+..+++. ...++.|+
T Consensus 83 ~iiIvs~~~P~~~------------~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy-------- 142 (301)
T COG1162 83 AIIVVSLVDPDFN------------TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY-------- 142 (301)
T ss_pred EEEEEECCCCCCC------------HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCE--------
T ss_conf 9999962689989------------88999999999776995799997533676167789999999986793--------
Q ss_pred CCCEEEEEECCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHCHHHHHHCCC
Q ss_conf 664069974575100110-78899863089998688899862278303785000289--999999999605688863389
Q gi|254780858|r 157 YDVDIIVHHGAGAYICGE-ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE--SIAVVPTILRRGASWYSGFGR 233 (425)
Q Consensus 157 ~~~~i~v~~g~g~Yi~Ge-Etali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVe--Tla~v~~i~~~G~~~y~~~G~ 233 (425)
++....... ++ -.+|.+.+.|+.-. |--++|+ ||-|++|-.- .-..+..|=.+ .+-|.
T Consensus 143 ---~v~~~s~~~----~~~~~~l~~~l~~~~sv------l~GqSGV-GKSSLiN~L~p~~~~~t~eIS~~-----~~rGk 203 (301)
T COG1162 143 ---PVLFVSAKN----GDGLEELAELLAGKITV------LLGQSGV-GKSTLINALLPELNQKTGEISEK-----LGRGR 203 (301)
T ss_pred ---EEEEECCCC----CCCHHHHHHHHCCCEEE------EECCCCC-CHHHHHHHHCCHHHHHHHHHCCC-----CCCCC
T ss_conf ---599953767----65589999975588499------9888877-69998874172121134421044-----78988
Q ss_pred CCCCCEEEEEC--CCC-CCCCEEEEECC-CCCHHHHHH
Q ss_conf 87743047642--678-87872689358-987999999
Q gi|254780858|r 234 ENNRGTKLFSI--SGH-VNYPCTVEESM-SITFDELIE 267 (425)
Q Consensus 234 ~~~~Gtkl~tv--sG~-V~~Pg~~evp~-Gt~l~eli~ 267 (425)
..+.-++++.+ +|. +..||.-|+.+ ...-.+|..
T Consensus 204 HTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 204 HTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred CCCCEEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 76324899983899889728997714745679999999
No 38
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=48.77 E-value=14 Score=17.13 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=14.8
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 4069974575100110788998630
Q gi|254780858|r 159 VDIIVHHGAGAYICGEETALLESLE 183 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~GeEtali~sie 183 (425)
..|.+...+.+.-.--..||+..+|
T Consensus 114 ~kV~ii~~ae~mn~~aaNaLLK~LE 138 (325)
T PRK08699 114 LRVILIHPAESMNVQAANSLLKVLE 138 (325)
T ss_pred CEEEEECCHHHHCHHHHHHHHHHHC
T ss_conf 4699985777758999999999841
No 39
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=48.39 E-value=16 Score=16.69 Aligned_cols=13 Identities=0% Similarity=-0.090 Sum_probs=7.6
Q ss_pred EEEEEE--CCCCCCC
Q ss_conf 199985--7677848
Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425)
Q Consensus 78 ~yvv~N--~~E~EPg 90 (425)
|+||+| |.=|.|.
T Consensus 24 K~Vll~FWatwC~pC 38 (126)
T cd03012 24 KVVLLDFWTYCCINC 38 (126)
T ss_pred CEEEEEEECCCCHHH
T ss_conf 989998722419378
No 40
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=47.88 E-value=4.2 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 02899999999998289
Q gi|254780858|r 353 EGTGWMMRVMERLVKGI 369 (425)
Q Consensus 353 ~Gt~~l~~il~~i~~G~ 369 (425)
.....+.+.++++.+|+
T Consensus 334 ~~Le~~~eAfe~~~~g~ 350 (358)
T TIGR03451 334 IGLDDVEEAFDKMHAGD 350 (358)
T ss_pred EEHHHHHHHHHHHHCCC
T ss_conf 87999999999987799
No 41
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=47.12 E-value=5.9 Score=19.69 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=5.3
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999999828999
Q gi|254780858|r 358 MMRVMERLVKGIAQ 371 (425)
Q Consensus 358 l~~il~~i~~G~a~ 371 (425)
..+.++-+.+|+-.
T Consensus 296 ~~~~l~li~~g~i~ 309 (343)
T PRK09880 296 FNTAVSWLANGVIN 309 (343)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999859998
No 42
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=46.91 E-value=13 Score=17.38 Aligned_cols=13 Identities=15% Similarity=0.039 Sum_probs=8.6
Q ss_pred EEEEEE--CCCCCCC
Q ss_conf 199985--7677848
Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425)
Q Consensus 78 ~yvv~N--~~E~EPg 90 (425)
|||++| |.=|-|.
T Consensus 18 K~vll~FWAsWC~pC 32 (132)
T cd02964 18 KTVGLYFSASWCPPC 32 (132)
T ss_pred CEEEEEEECCCCHHH
T ss_conf 889999984568204
No 43
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=46.65 E-value=18 Score=16.41 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=41.5
Q ss_pred EEEEEC-CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC---CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999857-67784-860048999862589999999999971836389981555---1789999999999998689977676
Q gi|254780858|r 79 YLVVNA-DESEP-GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE---FIRERESLQAAVDECYASGLLGSNS 153 (425)
Q Consensus 79 yvv~N~-~E~EP-gt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~e---y~~~~~~l~~ai~ea~~~g~lg~~~ 153 (425)
++.|.. ...+| |.|..=.++...-|- + ++.|..+ ..--|+.+++-++++......|.
T Consensus 45 ~LlC~~~~~~~~Cg~C~sC~~~~~~~HP--------------D--~~~i~pe~~~~~I~IdqIR~l~~~~~~~~~~g~-- 106 (328)
T PRK05707 45 FLLCEAPQGGGACGSCKGCQLLAAGSHP--------------D--NFVLEPEEADKPIKVDQVRELVSFVVQTAQLGG-- 106 (328)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHCCCCC--------------C--EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC--
T ss_conf 9848999998999888899998758999--------------8--799842666776979999999999831766789--
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 788664069974575100110788998630
Q gi|254780858|r 154 KLGYDVDIIVHHGAGAYICGEETALLESLE 183 (425)
Q Consensus 154 ~~g~~~~i~v~~g~g~Yi~GeEtali~sie 183 (425)
..|.|...+.+--..-..||+..||
T Consensus 107 -----~KV~iI~~Ae~m~~~AaNALLKtLE 131 (328)
T PRK05707 107 -----RKVVLIEPAEAMNRNAANALLKSLE 131 (328)
T ss_pred -----CEEEEEEHHHHHCHHHHHHHHHHHH
T ss_conf -----5799950287738999999999850
No 44
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=45.66 E-value=14 Score=17.20 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=4.2
Q ss_pred CEEEEECCCC
Q ss_conf 3047642678
Q gi|254780858|r 238 GTKLFSISGH 247 (425)
Q Consensus 238 Gtkl~tvsG~ 247 (425)
|..++.|+-+
T Consensus 95 ~v~vi~i~~d 104 (176)
T PRK03147 95 GVEIIAVNVD 104 (176)
T ss_pred CEEEEEECCC
T ss_conf 4478522078
No 45
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=44.21 E-value=23 Score=15.70 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEEECCCCCCCCHHHHHH
Q ss_conf 899999999999718363899815551--789999999999998689977676788664-06997457510011078899
Q gi|254780858|r 103 HTLIEGCVIASFAIGAHCAFIYVRGEF--IRERESLQAAVDECYASGLLGSNSKLGYDV-DIIVHHGAGAYICGEETALL 179 (425)
Q Consensus 103 ~~vieG~~i~a~a~gA~~~~I~ir~ey--~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~-~i~v~~g~g~Yi~GeEtali 179 (425)
..+||=.++++++.|.+-.++.=+-+- ++....+++.++-.++.|+ .+ .+....+.| =..|-
T Consensus 138 ~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~lGY---------~v~~~Sa~~~~g------l~~L~ 202 (344)
T PRK12288 138 LNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNIGY---------RVLMVSSHTGEG------LEPLE 202 (344)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC---------EEEEEECCCCCC------HHHHH
T ss_conf 789999999999869977999731440897789999999999986797---------399973688628------99999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 863089998688899862278303785000289
Q gi|254780858|r 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 (425)
Q Consensus 180 ~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVe 212 (425)
+.+.||.-. |.-++|+ ||-|++|..-
T Consensus 203 ~~L~~ktsv------f~GqSGV-GKSSLiN~L~ 228 (344)
T PRK12288 203 AALTGRISI------FVGQSGV-GKSSLINALL 228 (344)
T ss_pred HHHCCCEEE------EEECCCC-CHHHHHHHCC
T ss_conf 987678599------9806876-7888876107
No 46
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=44.16 E-value=23 Score=15.69 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 9999999999971836389981555178999999999999868997767678866-406997457510011078899863
Q gi|254780858|r 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESL 182 (425)
Q Consensus 104 ~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~-~~i~v~~g~g~Yi~GeEtali~si 182 (425)
..||=.+++++.-|++-.++.=+-+-.+..+.++..++..+..|+ . +.+....+.| -..|.+.+
T Consensus 98 ~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~gy---------~v~~~S~~~~~g------~~~L~~~l 162 (298)
T PRK00098 98 DLLDRFLVLAEANDIKPIIVLNKIDLVDDLEEARERLALYRAIGY---------DVLELSAKEGPG------LDELKPLL 162 (298)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC---------CEEEEECCCCCC------HHHHHHHH
T ss_conf 999999999998699589996424564779999999999987899---------789996899989------99999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 089998688899862278303785000289
Q gi|254780858|r 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212 (425)
Q Consensus 183 eG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVe 212 (425)
.||.-. |--++|+ ||-|++|...
T Consensus 163 ~~k~sv------~~G~SGV-GKSSLiN~L~ 185 (298)
T PRK00098 163 AGKVTV------LAGQSGV-GKSTLLNALV 185 (298)
T ss_pred CCCEEE------EECCCCC-CHHHHHHHHC
T ss_conf 798699------9878988-7888887607
No 47
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=43.66 E-value=7.6 Score=18.95 Aligned_cols=17 Identities=6% Similarity=-0.140 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 28999999999982899
Q gi|254780858|r 354 GTGWMMRVMERLVKGIA 370 (425)
Q Consensus 354 Gt~~l~~il~~i~~G~a 370 (425)
...++.+.++++.+|+.
T Consensus 325 pL~~~~eAf~~~~~gk~ 341 (349)
T TIGR03201 325 PLDQIEHVFAAAHHHKL 341 (349)
T ss_pred EHHHHHHHHHHHHCCCC
T ss_conf 19999999999977999
No 48
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=41.29 E-value=23 Score=15.66 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=15.8
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 4069974575100110788998630
Q gi|254780858|r 159 VDIIVHHGAGAYICGEETALLESLE 183 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~GeEtali~sie 183 (425)
..|.|...+..-----.-||+..||
T Consensus 111 ~KV~II~~Ae~m~~~AaNALLKtLE 135 (329)
T PRK08058 111 KKVYIIEHADKMTASAANSLLKFLE 135 (329)
T ss_pred CEEEEEECHHHHCHHHHHHHHHHHH
T ss_conf 6799973477629999999999864
No 49
>pfam04034 DUF367 Domain of unknown function (DUF367).
Probab=41.06 E-value=26 Score=15.38 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86888998622783-0378500028999999999960
Q gi|254780858|r 188 QPRLKPPFPANVGL-YGCPTTVNNVESIAVVPTILRR 223 (425)
Q Consensus 188 ~Pr~kPP~p~~~Gl-~g~PT~V~NVeTla~v~~i~~~ 223 (425)
.+|.=|++-+---+ ||||.-.+.||-+|+--.|+-.
T Consensus 46 ~~R~LP~LvAaNPVNYGKP~kLs~vEAlAAaLyI~G~ 82 (128)
T pfam04034 46 HERLLPFLVAANPVNYGKPCKLSCVEALAAALYIVGF 82 (128)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 8766650432488666887621279999999999499
No 50
>pfam01031 Dynamin_M Dynamin central region. This region lies between the GTPase domain, see pfam00350, and the pleckstrin homology (PH) domain, see pfam00169.
Probab=40.56 E-value=26 Score=15.33 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=7.3
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 93589879999998
Q gi|254780858|r 255 EESMSITFDELIEK 268 (425)
Q Consensus 255 evp~Gt~l~eli~~ 268 (425)
|+..|..++.++.+
T Consensus 140 el~ggarI~~iF~~ 153 (295)
T pfam01031 140 ELSGGARIRYIFHE 153 (295)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 06621799999999
No 51
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=39.85 E-value=27 Score=15.26 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC---CCC
Q ss_conf 89998625899999999999718363899815551789999999999998689977676788664069974575---100
Q gi|254780858|r 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAG---AYI 171 (425)
Q Consensus 95 r~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g---~Yi 171 (425)
.+|+ ++||++| ++---+....+-|--| .+-+.++++++++.. +| .+..++||| .||
T Consensus 12 ~~L~-~nP~kLi-~L~~F~d~y~~AKSsi------SEDi~I~~~~le~~~--------~G-----~~~T~~GAaGGv~Yi 70 (269)
T TIGR01743 12 KYLI-ENPNKLI-SLNKFSDKYESAKSSI------SEDIVIIKEVLEKFD--------IG-----KLETVPGAAGGVKYI 70 (269)
T ss_pred HHHH-HCCEEEC-CCHHHHHHHHHHHCCH------HHHHHHHHHHHHHCC--------CC-----EEEEECCCCCCEEEE
T ss_conf 7774-2780102-7005787764211110------144899999850068--------86-----478614788970584
Q ss_pred ----CCHHHHHHHHHCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----110788998630899986-88899-86227830378500028999999
Q gi|254780858|r 172 ----CGEETALLESLEGKKGQP-RLKPP-FPANVGLYGCPTTVNNVESIAVV 217 (425)
Q Consensus 172 ----~GeEtali~sieG~r~~P-r~kPP-~p~~~Gl~g~PT~V~NVeTla~v 217 (425)
.-|..-.++.+--+-..| |.-|- |-.-.-+..+|.++.|+.-+-+-
T Consensus 71 P~~~~~~~~~fv~~l~~~l~~s~Ri~PGgflY~~Dll~~Psi~ski~~ila~ 122 (269)
T TIGR01743 71 PEVSEKEAKEFVEELCEKLSESERILPGGFLYLTDLLFKPSILSKIGKILAS 122 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 5646045688999999862288840377475553454178157778888754
No 52
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=39.53 E-value=13 Score=17.39 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=44.5
Q ss_pred CCCCCC-HHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HC-CCCCHHHH
Q ss_conf 334220-1103873466517994286528999999999998762799885230289999999999----82-89998999
Q gi|254780858|r 302 IMDYDG-LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL----VK-GIAQKREI 375 (425)
Q Consensus 302 ~ld~~~-l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i----~~-G~a~~~Dl 375 (425)
|..||. ++-.+ .+.-||.+|..- .++-. .| .|||+=..-+..-|+.| .. -.-.++..
T Consensus 280 PIEYep~~WN~~---~~~~Iv~iD~~~--A~i~~----~y--------qP~~eLvGdia~tl~~l~~~~~~~~~L~~~~~ 342 (553)
T TIGR02418 280 PIEYEPRNWNSE---LDATIVHIDVEP--AEIDN----NY--------QPDLELVGDIASTLDLLAERVEGFYELPEDAQ 342 (553)
T ss_pred CEECCHHHCCCC---CCCEEEEEEEEE--EEHHH----CC--------CCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 503075544778---872068973144--21200----36--------86144325727779999586246610588899
Q ss_pred HHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999862236667765
Q gi|254780858|r 376 DLLYEVSKNIEGRTICALG 394 (425)
Q Consensus 376 ~~L~~la~~i~~~S~C~lG 394 (425)
+.|+++-..|...+.-.+-
T Consensus 343 ~~L~~l~~~~~~~~~~~~~ 361 (553)
T TIGR02418 343 DILEDLKQQIEELDEVKAD 361 (553)
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999865317875
No 53
>KOG2453 consensus
Probab=38.97 E-value=15 Score=16.89 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCCC
Q ss_conf 66517994286528999999999998762799-885230
Q gi|254780858|r 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ-CTPCRE 353 (425)
Q Consensus 316 Gsg~iiV~de~~~iv~~~~~~~~F~a~ESCGk-CtPCR~ 353 (425)
|.-+|||++|.+ +.++..-.-|.+--+.|| ||.||.
T Consensus 268 gnnaiiv~edad--l~lvvps~lfaavgtagqrctt~rr 304 (507)
T KOG2453 268 GNNAIIVNEDAD--LNLVVPSTLFAAVGTAGQRCTTTRR 304 (507)
T ss_pred CCCEEEEECCCC--CEEEEHHHHHHHHCCCCCCHHHHHH
T ss_conf 983599852666--2143257899886255540146667
No 54
>KOG0633 consensus
Probab=38.62 E-value=28 Score=15.13 Aligned_cols=75 Identities=9% Similarity=0.254 Sum_probs=48.2
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEE---ECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 476426788787268935898799999986155678711004898---52456565321002456334220110387346
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI---PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~---~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LG 316 (425)
-+++|+..|+.-+|+.||+-..++-=++.++--.... .++|.++ ||-|.+.++..+++.++ |.. -
T Consensus 122 sMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~ik~~di~Ki-Le~----------p 189 (375)
T KOG0633 122 SMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSIIKEDDILKI-LEM----------P 189 (375)
T ss_pred EEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCHHHHHHH-HHC----------C
T ss_conf 0589974037734798037887555699999998326-643289981798987330338899999-829----------8
Q ss_pred CCEEEEECCC
Q ss_conf 6517994286
Q gi|254780858|r 317 TAAVIVMDRS 326 (425)
Q Consensus 317 sg~iiV~de~ 326 (425)
+.+++|.||.
T Consensus 190 ~nglVVvDEA 199 (375)
T KOG0633 190 DNGLVVVDEA 199 (375)
T ss_pred CCCEEEEEEE
T ss_conf 8837997500
No 55
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=38.28 E-value=28 Score=15.10 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHCCCCCCCC---EEEEECCCCCHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHH-----CCCCCH-----H
Q ss_conf 11038734665---17994286528999999999-9987627998852302899999999998-----289998-----9
Q gi|254780858|r 308 LKEMGSGLGTA---AVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLV-----KGIAQK-----R 373 (425)
Q Consensus 308 l~~~Gs~LGsg---~iiV~de~~~iv~~~~~~~~-F~a~ESCGkCtPCR~Gt~~l~~il~~i~-----~G~a~~-----~ 373 (425)
=.+...-|..- .||||||.+++.++....+. -..+=|=-.=--|..+...+.+.+..+. +.+++. .
T Consensus 266 r~~~~~~L~~dysdsIVifDEAHNl~n~~~s~~Srkl~~~s~~~~~~c~~~~~~~~~~~~~~~~~~~~~~d~~~GafGsa 345 (813)
T TIGR00604 266 RSALSLELKKDYSDSIVIFDEAHNLDNVCISSLSRKLSNISKRSLKRCSKEIAEYFEKIEERKLRLIREVDARKGAFGSA 345 (813)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99987431001266258961225848999878646578613899999999999999889999999865137542402467
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999986223
Q gi|254780858|r 374 EIDLLYEVSKNIEG 387 (425)
Q Consensus 374 Dl~~L~~la~~i~~ 387 (425)
-++.|..+...|+.
T Consensus 346 ~~~~l~~lv~~L~~ 359 (813)
T TIGR00604 346 LLDELQKLVEGLKQ 359 (813)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 79999999989988
No 56
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=37.99 E-value=10 Score=18.05 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 302899999999998289
Q gi|254780858|r 352 REGTGWMMRVMERLVKGI 369 (425)
Q Consensus 352 R~Gt~~l~~il~~i~~G~ 369 (425)
+.....+.+.++.+.+|+
T Consensus 315 ~f~Lee~~eA~~~~~~g~ 332 (341)
T PRK05396 315 RFPIDDFQKGFEAMRSGQ 332 (341)
T ss_pred EEEHHHHHHHHHHHHCCC
T ss_conf 988999999999997799
No 57
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=36.61 E-value=28 Score=15.11 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 989999999999--862236667765024799999986388999999865
Q gi|254780858|r 371 QKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 (425)
Q Consensus 371 ~~~Dl~~L~~la--~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~ 418 (425)
+.-|+++|+++. .-|..-|.---|+....|--++++|||++|--.|+.
T Consensus 291 T~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~P~tLlDYfp~DfLl~iDE 340 (657)
T PRK05298 291 TRYDLEMLRELGYCSGIENYSRHLSGRAPGEPPPTLLDYFPDDFLLFIDE 340 (657)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEECC
T ss_conf 88799999982877560121565069998878944887577565999832
No 58
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=35.86 E-value=5.5 Score=19.91 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999876279988523028999999999982899989999999999--86223666776502479999998638
Q gi|254780858|r 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNF 408 (425)
Q Consensus 331 ~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la--~~i~~~S~C~lG~~a~~pv~s~l~~F 408 (425)
+-+..-++||..+ || .-...++-.| |.-||++|+++. .-|-.-|.=-=|+....|-.++++||
T Consensus 263 ~EL~eRl~~f~~~--~k-------llEaQRL~qR------T~yDLEMl~e~G~C~GIENYSRhl~GR~~GEpP~tLlDYF 327 (667)
T TIGR00631 263 KELEERLKYFEEQ--GK-------LLEAQRLKQR------TEYDLEMLREMGYCSGIENYSRHLSGRKPGEPPYTLLDYF 327 (667)
T ss_pred HHHHHHHHHHHHC--CC-------HHHHHHHHHH------HHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHHC
T ss_conf 9999999999877--95-------1788889886------8877888750673377000000216777631596477650
Q ss_pred ---HHHHHHHHHHH
Q ss_conf ---89999998651
Q gi|254780858|r 409 ---RPLIEERIDQY 419 (425)
Q Consensus 409 ---~dEfe~hI~~~ 419 (425)
|+||-=-|+..
T Consensus 328 ~gfP~DfLlviDES 341 (667)
T TIGR00631 328 IGFPEDFLLVIDES 341 (667)
T ss_pred CCCCCCEEEEEEEC
T ss_conf 46886508988402
No 59
>TIGR01312 XylB xylulokinase; InterPro: IPR006000 The ability to metabolise xylose, one of the most abundant sugars in nature, is dependent on its conversion to xylulose-5-phosphate, which then enters the non-oxidative pentose phosphate pathway . Xylulose-5-phosphate is produced from xylose by the sequential action of two enzymes; xylose isomerase, which converts xylose to xylulose, and xylulokinase, which subsequently phosphorylates xylulose. This entry represents bacterial xylulokinase. In addition to its role in xylose metabolism this enzyme may also have a biosynthetic role. 1-deoxy-D-xylulose 5-phosphate serves as a precursor for the biosynthesis of the vitamins thiamine and pyridoxal and for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate via the nonmevalonate pathway of terpenoid biosynthesis. Xylulokinase catalyses the phosphorylation of 1-deoxy-D-xylulose at the hydroxy group of C-5 . This reaction therefore constitutes a potential salvage pathway for the generation of 1-deoxy-D-xylulose 5-phosphate from exogenous or endogenous 1-deoxy-D-xylulose as starting material for the biosynthesis of terpenoids, thiamine and pyridoxal. ; GO: 0004856 xylulokinase activity, 0005997 xylulose metabolic process.
Probab=35.09 E-value=8.2 Score=18.71 Aligned_cols=136 Identities=17% Similarity=0.245 Sum_probs=88.3
Q ss_pred CCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC--CCCCEEEE--ECCCCCHHHHHHHHHCCCCCCCCCEE
Q ss_conf 500028999999999960568886338987743047642678--87872689--35898799999986155678711004
Q gi|254780858|r 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH--VNYPCTVE--ESMSITFDELIEKHCGGIRGGWDNLL 281 (425)
Q Consensus 206 T~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~--V~~Pg~~e--vp~Gt~l~eli~~~~GG~~~~~~~~k 281 (425)
|+-.+|.+-.+=-.|+.+ +.++++ -.=|-+|| -..|+-..|+-..+ |+..+..
T Consensus 179 T~~fdV~~R~Ws~~~L~~------------------~~~~~~l~~~lP~l~e~~~~~G~~~~~~a~~~--Gl~~~v~--- 235 (494)
T TIGR01312 179 TLWFDVKKRAWSKELLDA------------------LDLPLDLESLLPELIESSEVVGTVRPEVAARL--GLSAGVP--- 235 (494)
T ss_pred HHHHHHCCHHHHHHHHHH------------------HCCCCCCHHHCCEEECCCCCCCCCCHHHHHHC--CCCCCCE---
T ss_conf 665311002367999998------------------39898828859701478853027538999744--8999876---
Q ss_pred EEEECCC--CCCCCCCCCCCC--CCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH-----------HCC
Q ss_conf 8985245--656532100245--6334220110387346651799428652899999999999876-----------279
Q gi|254780858|r 282 AVIPGGS--SVPCLPAGQMRG--AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-----------SCG 346 (425)
Q Consensus 282 av~~GG~--~~g~l~~~~ld~--~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~E-----------SCG 346 (425)
|.-||. +++-|.....+. +.| .|||.|++..-++....+-..++.-|++.. ||+
T Consensus 236 -V~~GGGDNA~gA~G~G~v~~G~~~~----------SlGTSGv~~a~~~~~~~dp~g~Vh~Fcha~P~~w~~m~vtLsat 304 (494)
T TIGR01312 236 -VAAGGGDNAAGAIGTGIVKPGDVTV----------SLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWYPMGVTLSAT 304 (494)
T ss_pred -EEECCHHHHHHHHCCCCCCCCCEEE----------EECCCCEEEEEECCCCCCCCCCCCEEECCCCCCCEEHHHHHHHH
T ss_conf -8716277898985136226884178----------86354101001046667745661210005898713134556658
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 988523028999999999982899989999999999862236
Q gi|254780858|r 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388 (425)
Q Consensus 347 kCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~ 388 (425)
-| +.|+.+++.. ..|++.|.+.++...-+
T Consensus 305 ~~------l~w~~~l~~~-------~~~~~~l~~~~~~~~~G 333 (494)
T TIGR01312 305 SS------LEWFRELFGK-------SEDVEELNEEAEKSPPG 333 (494)
T ss_pred HH------HHHHHHHHCC-------CCCHHHHHHHHHHCCCC
T ss_conf 89------9999996203-------46778999997527778
No 60
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; InterPro: IPR014183 The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284 from EC). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated as class III alcohol dehydrogenases (1.1.1.1 from EC), i.e. alcohol dehydrogenases that do not require glutathione and they tend to show poor activity for ethanol among their various substrate alcohols..
Probab=34.53 E-value=6.2 Score=19.51 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 0002899999999
Q gi|254780858|r 207 TVNNVESIAVVPT 219 (425)
Q Consensus 207 ~V~NVeTla~v~~ 219 (425)
.|-||+.+-+.-.
T Consensus 262 ~~Gn~~~mr~ale 274 (368)
T TIGR02818 262 CIGNVNVMRAALE 274 (368)
T ss_pred ECCHHHHHHHHHH
T ss_conf 1020789999987
No 61
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=34.45 E-value=32 Score=14.70 Aligned_cols=237 Identities=21% Similarity=0.218 Sum_probs=114.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 899999999839776875711245568742356568861999857677848--600489998625899999999999---
Q gi|254780858|r 40 RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG--TCKDRDIMRHEPHTLIEGCVIASF--- 114 (425)
Q Consensus 40 ~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPg--t~kDr~Ll~~~p~~vieG~~i~a~--- 114 (425)
|+.=++.-++-|| ||.|.|-+... .-. + =..|-| ++|- +++ =|+=.-+..+.|.+++..
T Consensus 166 ~~~R~e~~~~L~i-------lP~G~~~e~~~-~~~---~-t~tn~d-sdpv~L~~~---~Lrlgia~~~~g~~~~~~l~D 229 (647)
T TIGR01702 166 PEKRLEKWEKLGI-------LPGGIKAEVLD-AVS---K-TSTNLD-SDPVDLAVK---ALRLGIATGLTGQILAEELSD 229 (647)
T ss_pred CCHHHHHHHHCCC-------CCCCHHHHHHH-HHH---H-HHCCCC-CCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 8413678763688-------77735689999-888---6-423789-877999999---999999999889999987536
Q ss_pred ----------------HHCCCEEEEEECCCCHHHHHHHHHHH------HHHHHCC-CCCCC-CCCCCCCEEEEEECCCCC
Q ss_conf ----------------71836389981555178999999999------9998689-97767-678866406997457510
Q gi|254780858|r 115 ----------------AIGAHCAFIYVRGEFIRERESLQAAV------DECYASG-LLGSN-SKLGYDVDIIVHHGAGAY 170 (425)
Q Consensus 115 ----------------a~gA~~~~I~ir~ey~~~~~~l~~ai------~ea~~~g-~lg~~-~~~g~~~~i~v~~g~g~Y 170 (425)
.+.-+..=|.|.++.|..++.+.++. ++|+++| --|-| .| .
T Consensus 230 iLFGtP~p~~s~~~lgv~dP~~VNI~~~GH~P~l~~~l~~~A~~edi~~~Ak~AGaAkGi~ivG---------------~ 294 (647)
T TIGR01702 230 ILFGTPQPVVSEADLGVLDPDYVNIVVNGHQPLLSEILIEAAKEEDIQDKAKAAGAAKGIKIVG---------------I 294 (647)
T ss_pred HHCCCCCCEEEECCCEECCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEE---------------E
T ss_conf 6538995268736762007676336883886468899999852856578999704778744778---------------7
Q ss_pred CC-CHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHH----------------HHHHHHCHHHHHHCC
Q ss_conf 01-107889986308999868889986-227830378500028999999----------------999960568886338
Q gi|254780858|r 171 IC-GEETALLESLEGKKGQPRLKPPFP-ANVGLYGCPTTVNNVESIAVV----------------PTILRRGASWYSGFG 232 (425)
Q Consensus 171 i~-GeEtali~sieG~r~~Pr~kPP~p-~~~Gl~g~PT~V~NVeTla~v----------------~~i~~~G~~~y~~~G 232 (425)
+| |.| ++ -|.. .+| +=+|+ +=||.-+=..| |.|=. =+
T Consensus 295 ~CtGqe------~~-----~R~~-H~~EvFvG~-----~gN~~~~E~~iaTG~iD~~~~d~nC~~Psl~~-~A------- 349 (647)
T TIGR01702 295 ICTGQE------LL-----MRVG-HLPEVFVGL-----VGNWLSQELLIATGAIDAMVVDVNCTLPSLPA-VA------- 349 (647)
T ss_pred EECCCH------HH-----HCCC-CCCCCHHHH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHH-HH-------
T ss_conf 740415------75-----3457-776210234-----75389898888416237766612588887146-77-------
Q ss_pred CCCCCCEEEEECCCCCCCCEEEE-ECCCCCHH-----HHH----HHHHCCCCCC-CC-----CEE---EEEECCCCCC--
Q ss_conf 98774304764267887872689-35898799-----999----9861556787-11-----004---8985245656--
Q gi|254780858|r 233 RENNRGTKLFSISGHVNYPCTVE-ESMSITFD-----ELI----EKHCGGIRGG-WD-----NLL---AVIPGGSSVP-- 291 (425)
Q Consensus 233 ~~~~~Gtkl~tvsG~V~~Pg~~e-vp~Gt~l~-----eli----~~~~GG~~~~-~~-----~~k---av~~GG~~~g-- 291 (425)
+.-.|||+||+-.++-||+++ +|+-.-=+ ++| |.|.- +.. .. ..| -+++ |.|..
T Consensus 350 --E~y~v~ii~vd~~~~~~Ga~~~i~y~~~~A~E~A~~iI~~AIeaFk~--R~~s~~~~~~~~~kG~~k~vv-GfS~Eal 424 (647)
T TIGR01702 350 --EKYHVKIITVDDLAKIKGADYKIPYDPEKAEETAKTIIEMAIEAFKE--RKESKQKVAIPKEKGKQKVVV-GFSEEAL 424 (647)
T ss_pred --HHHCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCEEEE-EECHHHH
T ss_conf --36175378741000017700148988767889999999999997630--346788656540048621788-3077999
Q ss_pred --CCCCCCCCCCCCCC-CCHHHCCC------CCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf --53210024563342-20110387------3466517994286528999999999
Q gi|254780858|r 292 --CLPAGQMRGAIMDY-DGLKEMGS------GLGTAAVIVMDRSTDIIKAIWRLSV 338 (425)
Q Consensus 292 --~l~~~~ld~~~ld~-~~l~~~Gs------~LGsg~iiV~de~~~iv~~~~~~~~ 338 (425)
+| ..++++-|+-. -++.+.|- ..|+.-+-....|...|++++.+++
T Consensus 425 ~~~L-g~~~~~~P~~pLvd~I~~G~IkGVv~~vgCsnL~~~gqD~~~v~l~KELiK 479 (647)
T TIGR01702 425 VKAL-GGKLADDPLKPLVDLIAKGKIKGVVLLVGCSNLKNGGQDSSTVTLTKELIK 479 (647)
T ss_pred HHHH-CCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEHHHHHHHH
T ss_conf 9972-464234754004554104741268899743036799940466313267530
No 62
>pfam03431 RNA_replicase_B RNA replicase, beta-chain. This family is of Leviviridae RNA replicases. The replicase is also known as RNA dependent RNA polymerase.
Probab=34.05 E-value=33 Score=14.66 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCCCEEEEECCC-CCHHHHHHHHHHHHH-----------------HHHCCCCC---------CCCCH---HHHHHHHHHH
Q ss_conf 466517994286-528999999999998-----------------76279988---------52302---8999999999
Q gi|254780858|r 315 LGTAAVIVMDRS-TDIIKAIWRLSVFYK-----------------HESCGQCT---------PCREG---TGWMMRVMER 364 (425)
Q Consensus 315 LGsg~iiV~de~-~~iv~~~~~~~~F~a-----------------~ESCGkCt---------PCR~G---t~~l~~il~~ 364 (425)
+-++.|-|+.|| -++.+++..+++++. +|||||-. .||.- ...|..+|++
T Consensus 325 ~~~~~v~iYGDDII~ps~~~~~L~~vl~yvGF~pN~~KTF~~GpFRESCGkH~f~GvDVtPfYik~pi~~l~dlilvlN~ 404 (539)
T pfam03431 325 GRTSDVGIYGDDIIVPTCAVPPLMEVLSYVGFTPNLKKTFTSGPFRESCGKHYFAGVDVTPFYIKRPIVSLPDLILVLNS 404 (539)
T ss_pred CCCCEEEEECCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 88750588437466322221899999988075468666435686144554543067777543655666788999999987
Q ss_pred HH-----CCCCCHHHHHHHHHHH
Q ss_conf 98-----2899989999999999
Q gi|254780858|r 365 LV-----KGIAQKREIDLLYEVS 382 (425)
Q Consensus 365 i~-----~G~a~~~Dl~~L~~la 382 (425)
|. +|-..++-+.......
T Consensus 405 i~rW~tv~Gi~dPr~~~v~~ky~ 427 (539)
T pfam03431 405 IYRWGTVDGIWDPRLYPVYLKYR 427 (539)
T ss_pred HCCCEECCCCCCCCHHHHHHHHH
T ss_conf 31501116732750668999998
No 63
>pfam08240 ADH_N Alcohol dehydrogenase GroES-like domain. This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure.
Probab=33.69 E-value=9.2 Score=18.36 Aligned_cols=17 Identities=41% Similarity=1.046 Sum_probs=12.6
Q ss_pred HHCCCCCCCCCHHHHHH
Q ss_conf 62799885230289999
Q gi|254780858|r 343 ESCGQCTPCREGTGWMM 359 (425)
Q Consensus 343 ESCGkCtPCR~Gt~~l~ 359 (425)
-+||.|..|+.|...+-
T Consensus 64 ~~Cg~C~~C~~G~~~~C 80 (108)
T pfam08240 64 IPCGKCAACREGRENLC 80 (108)
T ss_pred CCCCCCHHHHCCCCCCC
T ss_conf 48998978959090208
No 64
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=33.04 E-value=30 Score=14.94 Aligned_cols=29 Identities=24% Similarity=0.624 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 888998622783037850002899999999996
Q gi|254780858|r 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222 (425)
Q Consensus 190 r~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~ 222 (425)
..-||+| +||-|-+|+|.|-+..+-.++.
T Consensus 212 PDDPP~p----i~GLpRIvst~ed~~~ll~~vd 240 (362)
T COG1312 212 PDDPPWP----IFGLPRIVSTIEDYQRLLEMVD 240 (362)
T ss_pred CCCCCCC----CCCCCHHCCCHHHHHHHHHHCC
T ss_conf 9999844----4686133088999999997336
No 65
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=32.95 E-value=34 Score=14.54 Aligned_cols=282 Identities=17% Similarity=0.201 Sum_probs=130.0
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 67798999977998999999826989999999983977687571124556874235656886199985767784860048
Q gi|254780858|r 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 (425)
Q Consensus 16 ~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr 95 (425)
...++.+.... -.+.-+++|..+|+ .+..++++|.+--||.||-.=.. -+...-.+.+ +-.+-.+-++-.. +.
T Consensus 140 ~~~~~~~~~~~-a~~~a~~aL~~TP~-~LpvLkeAGVVDAGg~Gl~~ile--g~~~~l~G~~--~~~~~~~~~~~~~-~~ 212 (530)
T TIGR03599 140 EGDDLEEVMEA-AVEAAEKALARTPE-LLPVLKEAGVVDSGGQGLVVILE--GMLAALTGEP--IELAPYKPEPPEG-DE 212 (530)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHCHH-HHHHHHHCCCCCCCHHHHHHHHH--HHHHHHCCCC--CCCCCCCCCCCCC-CC
T ss_conf 58999999999-99999999983867-66788866950774151999999--9999845998--7744455677642-22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCEEEEEECCCCCC
Q ss_conf 99986258999999999997183638998-15551789999999999998689977676---788664069974575100
Q gi|254780858|r 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIY-VRGEFIRERESLQAAVDECYASGLLGSNS---KLGYDVDIIVHHGAGAYI 171 (425)
Q Consensus 96 ~Ll~~~p~~vieG~~i~a~a~gA~~~~I~-ir~ey~~~~~~l~~ai~ea~~~g~lg~~~---~~g~~~~i~v~~g~g~Yi 171 (425)
.... .++. ..-.=|.-| |+.......+.+++.+... |..+ +.+--+.++||+--
T Consensus 213 ~~~~-~~~~-----------~~~gYctefl~~~~~~~~~~~lr~~L~~~------GdSlvvv~~~~~~kVHvHT~~---- 270 (530)
T TIGR03599 213 IASE-EHHD-----------IEFGYCTEFLVKLKDKFDEEKFRKELEKL------GDSLVVVGDDDLVKVHVHTND---- 270 (530)
T ss_pred CCCC-CCCC-----------CCCCEEEEEEEECCCCCCHHHHHHHHHHH------CCEEEEECCCCEEEEEEECCC----
T ss_conf 3455-6557-----------88564899999878757999999999973------985999757984999994199----
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 11078899863089998688899862278303785--0002899999999996056888633898774304764267887
Q gi|254780858|r 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT--TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249 (425)
Q Consensus 172 ~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT--~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~V~ 249 (425)
.-..|+..- . ||+++ -|.|-.- +...++.. + +--.-....+
T Consensus 271 ---pG~vle~~~--------------~---~G~l~~ikIenM~~--Q~~~~~~~----------~-----~~~~~~~~~~ 313 (530)
T TIGR03599 271 ---PGLVLEYGQ--------------K---YGELIKIKIENMRE--QHEEILEG----------T-----SNEEKKKEEK 313 (530)
T ss_pred ---HHHHHHHHH--------------H---HCCEEEEEEECCHH--HHHHHHCC----------C-----CCCCCCCCCC
T ss_conf ---799999999--------------8---39367999815648--89876313----------5-----4344556667
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCH
Q ss_conf 87268935898799999986155678711004898524565653210024563342201103873466517994286528
Q gi|254780858|r 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329 (425)
Q Consensus 250 ~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~i 329 (425)
..+++-|-.|--+.+++... | .. .|+.||..+-.- .+++. +.+. .++..-|+|++.+.++
T Consensus 314 ~~~vVAv~~G~Gl~~if~~~-G-----a~---~Vi~ggqt~NPS-t~dil------~Ai~----~~~a~~ViiLPNn~Ni 373 (530)
T TIGR03599 314 EYAIVAVAPGEGIAELFKSL-G-----AD---VVIEGGQTMNPS-TEDIL------KAIE----KVNAKNVFVLPNNKNI 373 (530)
T ss_pred CEEEEEEECCHHHHHHHHHC-C-----CC---EEECCCCCCCCC-HHHHH------HHHH----HCCCCEEEEECCCCHH
T ss_conf 73999994584299999977-9-----96---996589989968-99999------9998----5798739994799108
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999998762799885230289999999999828999899999999998622
Q gi|254780858|r 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386 (425)
Q Consensus 330 v~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~ 386 (425)
+-.+.+..+.... -=.-.|+|-=.+-+..++. .......+++...|.+.+..++
T Consensus 374 ilaA~qaa~~~~k--~V~VipT~si~qgiaAl~~-fdp~~~~een~~~M~ea~~~v~ 427 (530)
T TIGR03599 374 ILAAEQAAELADK--NVVVIPTKTIVQGLAALLV-FDPEASLEDNKEAMEEAIKAVR 427 (530)
T ss_pred HHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8999999874289--7899947988999999997-1878887899999999995597
No 66
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , , are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins. One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=32.87 E-value=25 Score=15.50 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=27.0
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99987627998852302899999999998289-998999999999986223666
Q gi|254780858|r 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGI-AQKREIDLLYEVSKNIEGRTI 390 (425)
Q Consensus 338 ~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~-a~~~Dl~~L~~la~~i~~~S~ 390 (425)
.|+| -+|.|||.=++-+.++-+.....- =-.=|.|.-.++|..-.-+||
T Consensus 20 DFWA----~WCGPCKm~aP~lee~a~e~~~~v~~~KlnvD~~~~~A~~ygi~SI 69 (101)
T TIGR01068 20 DFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSI 69 (101)
T ss_pred EEEC----CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCC
T ss_conf 7435----9998734424688888754169746888534788341445285405
No 67
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=32.86 E-value=23 Score=15.70 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=22.0
Q ss_pred CEEEEEE--CCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCHHHHHHHHH
Q ss_conf 6199985--76778486004-8999862589999999999971836389981--5551789999999
Q gi|254780858|r 77 PHYLVVN--ADESEPGTCKD-RDIMRHEPHTLIEGCVIASFAIGAHCAFIYV--RGEFIRERESLQA 138 (425)
Q Consensus 77 ~~yvv~N--~~E~EPgt~kD-r~Ll~~~p~~vieG~~i~a~a~gA~~~~I~i--r~ey~~~~~~l~~ 138 (425)
.+.+.+| |.=|=| |+| |.+|.+=. =+| +==+|+| ||+...|++-|.+
T Consensus 64 G~~~LlNVWAsWCp~--CraEHp~L~eLa---k~G----------rl~ivG~dYKD~~~~Al~~Lke 115 (175)
T TIGR00385 64 GKPVLLNVWASWCPP--CRAEHPYLNELA---KEG----------RLPIVGVDYKDQSQNALKFLKE 115 (175)
T ss_pred CCEEEEEEEECCCCC--CHHCCHHHHHHH---HCC----------CCEEEEEECCCCCHHHHHHHHH
T ss_conf 960699884036888--310005789997---539----------7307886347884578888764
No 68
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=32.07 E-value=11 Score=17.72 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=15.3
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9877430476426788787268935898799999986
Q gi|254780858|r 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269 (425)
Q Consensus 233 ~~~~~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~ 269 (425)
.|-.| ||+|||-.-+. ++=++.+|+..+.+++
T Consensus 410 RPL~P--RLYSIaSSq~e---v~dEVHlTVg~V~y~~ 441 (628)
T TIGR01931 410 RPLTP--RLYSIASSQAE---VDDEVHLTVGVVRYEA 441 (628)
T ss_pred CCCCC--CHHHHHHHHHH---CCCEEEEEEEEEEEEE
T ss_conf 77885--11218889865---6880688766889820
No 69
>PRK05481 lipoyl synthase; Provisional
Probab=31.84 E-value=10 Score=18.09 Aligned_cols=189 Identities=18% Similarity=0.198 Sum_probs=105.7
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE--ECCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8576778486004899986258999999999997183638998--15551789-99999999999868997767678866
Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY--VRGEFIRE-RESLQAAVDECYASGLLGSNSKLGYD 158 (425)
Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~--ir~ey~~~-~~~l~~ai~ea~~~g~lg~~~~~g~~ 158 (425)
||-+-+-|. .+=.+.|..|-+. ...+|-+.++|- -||+-++. ...+-+.|.+.++.. + +
T Consensus 69 C~V~tG~P~-----~~D~~EP~~vA~a----v~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~---P------~ 130 (289)
T PRK05481 69 CDVATGRPL-----PLDPDEPERVAEA----VARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELS---P------G 130 (289)
T ss_pred CCCCCCCCC-----CCCCHHHHHHHHH----HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC---C------C
T ss_conf 407889989-----8870307999999----99828976999634166665655499999999998559---9------9
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCC--
Q ss_conf 406997457510011078899863089998688899862278303785000289999999999605688863389877--
Q gi|254780858|r 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN-- 236 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~-- 236 (425)
..|+|-.. =-.|...++|+.+---+ | + + +-||+||+-.+...+|.++.+.+++..=+.
T Consensus 131 ~~iEvLiP---DF~G~~~~~l~~v~~a~--P--------d--V-----~nHNiETV~rL~~~VRp~a~Y~rSL~vL~~~k 190 (289)
T PRK05481 131 TTIEVLIP---DFRGRKDAALEIVVAAP--P--------D--V-----FNHNLETVPRLYKRVRPGADYERSLELLKRAK 190 (289)
T ss_pred CEEEECCC---CCCCCHHHHHHHHHHCC--H--------H--H-----HHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77997072---11469999999998567--1--------7--7-----64351310443623388233899999999999
Q ss_pred -CCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECC---CCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf -430476426788787268935898799999986155678711004898524---5656532100245633422011038
Q gi|254780858|r 237 -RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG---SSVPCLPAGQMRGAIMDYDGLKEMG 312 (425)
Q Consensus 237 -~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG---~~~g~l~~~~ld~~~ld~~~l~~~G 312 (425)
....++|=|| +-|-+|-+-.|+++.+.-=-..| ..-+-.|- |+-.-+|...+- .|-.|+.++..+
T Consensus 191 ~~~p~~~TKSg-------iMvGLGEt~eEv~~~~~DL~~~g---vdilTiGQYL~Ps~~hlpV~ryv-~P~eF~~~~~~a 259 (289)
T PRK05481 191 ELDPGIPTKSG-------LMVGLGETDEEVLEVMDDLRAHG---VDILTIGQYLQPSRKHLPVERYV-TPEEFDEYKEIA 259 (289)
T ss_pred HHCCCCCEEEE-------EEEECCCCHHHHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCEECC-CHHHHHHHHHHH
T ss_conf 74899824135-------67755788999999999999819---98998340358886668843356-989999999999
Q ss_pred CCCCCCE
Q ss_conf 7346651
Q gi|254780858|r 313 SGLGTAA 319 (425)
Q Consensus 313 s~LGsg~ 319 (425)
-.+|--.
T Consensus 260 ~~~GF~~ 266 (289)
T PRK05481 260 LELGFLH 266 (289)
T ss_pred HHCCCCE
T ss_conf 9759967
No 70
>PHA00028 rep RNA replicase, beta subunit
Probab=31.60 E-value=36 Score=14.39 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCEEEEECCCC-CHHHHHHHHHHHHH-----------------HHHCCCCC---------CCC---CHHHHHHHHHHHHH
Q ss_conf 65179942865-28999999999998-----------------76279988---------523---02899999999998
Q gi|254780858|r 317 TAAVIVMDRST-DIIKAIWRLSVFYK-----------------HESCGQCT---------PCR---EGTGWMMRVMERLV 366 (425)
Q Consensus 317 sg~iiV~de~~-~iv~~~~~~~~F~a-----------------~ESCGkCt---------PCR---~Gt~~l~~il~~i~ 366 (425)
.+.|-|+.||. +..+++..++++++ +||||+-- .|| +....+..++++|.
T Consensus 333 ~~ti~VYGDDIIvps~~a~~li~vlsyvgF~pN~kKTF~~G~FRESCGaH~f~gvDVtPFYik~pi~~l~dlililN~l~ 412 (561)
T PHA00028 333 PGTISVYGDDIIVPTEVAPPLINVLSYVGFMPNLKKTFWTGPFRESCGAHYFAGVDVTPFYIKRPLDNLPDLILILNSLR 412 (561)
T ss_pred CCEEEEECCCEEEEHHHHHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 97068965846731555188999998836004776643467624332032216756653586255468899999998631
Q ss_pred -----CCCCCHHHHHHHHHHHHHHCCC-CCCC
Q ss_conf -----2899989999999999862236-6677
Q gi|254780858|r 367 -----KGIAQKREIDLLYEVSKNIEGR-TICA 392 (425)
Q Consensus 367 -----~G~a~~~Dl~~L~~la~~i~~~-S~C~ 392 (425)
+|-..+.-...-....+.++.. .+|+
T Consensus 413 ~W~~v~Gi~dPr~~~v~~ky~~liP~~~~i~~ 444 (561)
T PHA00028 413 RWGTVTGISDPRLYPLYNKYRDLIPKTLVLPG 444 (561)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 30124664673049999999986887462678
No 71
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=31.57 E-value=11 Score=17.80 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 989999999999--86223666776502479999998638899999986
Q gi|254780858|r 371 QKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417 (425)
Q Consensus 371 ~~~Dl~~L~~la--~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~ 417 (425)
+.-|+++|+++. .-+..-|.---|.....|-.++++|||++|--.|+
T Consensus 290 T~~DlEMl~e~G~C~GIENYSRhl~gr~~Ge~P~tL~DYfp~d~Ll~ID 338 (663)
T COG0556 290 TEYDLEMLRETGYCSGIENYSRHLTGRKPGEPPYTLFDYFPDDFLLFID 338 (663)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEE
T ss_conf 7753999998287766133356505899995798478858841389982
No 72
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=31.51 E-value=36 Score=14.38 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 26788787268935898799999986155678711004898524565653210024563342201103873466517994
Q gi|254780858|r 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323 (425)
Q Consensus 244 vsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~ 323 (425)
.+...+.-+++-|+.|--+.++++.++ ...|+.||..+-....+ -+.+.. ..++--++++
T Consensus 320 ~~~~~~~~~ivaV~~g~g~a~~f~~~G---------~~~vi~ggqt~nPSt~d----------iv~ai~-~~~a~~v~il 379 (542)
T COG1461 320 LKKETKDRGIVAVADGEGIADLFKSLG---------ADVVIEGGQTMNPSTDD----------IVEAIE-SVNAKNVFIL 379 (542)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCC---------CCEEECCCCCCCCCHHH----------HHHHHH-HCCCCEEEEC
T ss_conf 233566737999459846899998669---------96894487656942899----------999999-7599758987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHH
Q ss_conf 2865289999999999987627998852302899999999998289998---9999999999862
Q gi|254780858|r 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK---REIDLLYEVSKNI 385 (425)
Q Consensus 324 de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~---~Dl~~L~~la~~i 385 (425)
..+-.++-.+.+-++-+.+. =.++| |.-+.+.+.++..-+... ++++.+.+....+
T Consensus 380 pnnkni~laa~~aa~~~~~~--v~vv~----t~t~~qglaAl~~f~~~~~~e~n~~~M~~al~~~ 438 (542)
T COG1461 380 PNNKNIIMAAEQAAEAVDEN--VVVIP----TKTVPQGLAALLVFDPDQSLEDNKETMAEALKKV 438 (542)
T ss_pred CCCHHHHHHHHHHHHHHCCC--EEEEE----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 78525999789988874071--69983----2628877888750683456666699999998527
No 73
>pfam12395 DUF3658 Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.
Probab=31.31 E-value=36 Score=14.36 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998269899999999839776875711245568742356568861999857677848600489998625899999999
Q gi|254780858|r 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111 (425)
Q Consensus 32 l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i 111 (425)
+.++-..+.++.....++ |+...+.++. .+...-|---+-|..+=|.+|+++.+......+.+
T Consensus 5 ~~~~~~ls~~e~~~l~~e----------------W~~l~~~n~~-LR~w~~g~i~s~~ed~~D~~Il~~~~~~~~~a~rv 67 (111)
T pfam12395 5 LEEAKPLSVEERQRLAKE----------------WEELSNENAV-LRIWEDGKIVSVPEDYFDAFILEAATDEFQKAARV 67 (111)
T ss_pred HHHCCCCCHHHHHHHHHH----------------HHHHHHCCCC-EEEEECCEEEEECHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 131298899999999999----------------9999818754-37878997887067876399996383544599999
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 999718363899815551789999999999
Q gi|254780858|r 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVD 141 (425)
Q Consensus 112 ~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ 141 (425)
++.++|..+ .+|-+.| ..-++++-|+
T Consensus 68 Ig~v~g~~~--~~v~D~f--l~~Rir~Li~ 93 (111)
T pfam12395 68 VGEVMGHLE--QLVGDTF--LEYRIRELIK 93 (111)
T ss_pred HHHHHHHCC--CCCCHHH--HHHHHHHHHH
T ss_conf 999998667--7777899--9999999998
No 74
>PRK05354 arginine decarboxylase; Provisional
Probab=31.07 E-value=36 Score=14.34 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=97.4
Q ss_pred HHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC--CCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 99997799899999982698999999998397768757112455687423565--6886199985767784860048999
Q gi|254780858|r 21 SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIM 98 (425)
Q Consensus 21 ~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~--~~~~~yvv~N~~E~EPgt~kDr~Ll 98 (425)
++|-=.|.|++.=-+--.....|+++|-++|-. =.-|+-+|-|=++++-.+ ......+|||| |||+..+
T Consensus 90 ~e~~Y~g~y~gVyPIKVNQ~r~VVeeI~~~G~~--~~~GLEAGSKpEL~a~la~~~~~~aliiCNG-------yKD~eyI 160 (634)
T PRK05354 90 EEYGYQGDYQGVYPIKVNQQRHVVEEIVASGKP--YNLGLEAGSKPELMAVLALANDPGSLIVCNG-------YKDREYI 160 (634)
T ss_pred HHHCCCCCCCEECCEEECCHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHCCCCCCEEEECC-------CCCHHHH
T ss_conf 982988866304223436528999999972765--6555535868999999862379995599568-------2769999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE-CCCCCC--CCHH
Q ss_conf 8625899999999999718363899815551789999999999998689977676788664069974-575100--1107
Q gi|254780858|r 99 RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH-GAGAYI--CGEE 175 (425)
Q Consensus 99 ~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~-g~g~Yi--~GeE 175 (425)
+- +++ +.-+ -++++|-|+ .+...+. -|+.+++.+. -+.+| +.+++.. |.|..- .||.
T Consensus 161 ~L--------Al~-a~kl-G~~v~iViE--k~~EL~~---il~~a~~l~v-~P~iG----vR~kL~s~gsGkW~~SgGd~ 220 (634)
T PRK05354 161 RL--------ALI-GRKL-GHKVFIVIE--KLSELEL---ILEEAKELGV-KPRLG----VRARLASQGSGKWQSSGGEK 220 (634)
T ss_pred HH--------HHH-HHHC-CCCEEEEEC--CHHHHHH---HHHHHHHCCC-CCCEE----EEEEECCCCCCCCCCCCCCC
T ss_conf 99--------999-9976-996699974--6899999---9999997499-98505----79986256576106778741
Q ss_pred -------HHHHHHHCCCC--CCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECC
Q ss_conf -------88998630899--986-88899862278303785000289999999999605688863389877430476426
Q gi|254780858|r 176 -------TALLESLEGKK--GQP-RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 (425)
Q Consensus 176 -------tali~sieG~r--~~P-r~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvs 245 (425)
+.+++.++--+ ++. +.+ =+-.-.| .-+.|+.+ |...+++.+--|..+-.-..+ -+.+-|.
T Consensus 221 sKFGLs~~eil~~v~~Lk~~~~ld~L~-LLHfHiG-----SQI~~I~~---ik~av~Ea~r~Y~eL~~~Ga~-i~ylDvG 290 (634)
T PRK05354 221 SKFGLSATEILEAVERLREAGLLDCLQ-LLHFHLG-----SQIANIRD---IKTAVREAARIYVELRKLGAP-IKYLDVG 290 (634)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHH-HHEECCC-----CCCCCHHH---HHHHHHHHHHHHHHHHHCCCC-CEEEEEC
T ss_conf 215888999999999988658453243-3113245-----55534999---999999999999999975898-5178515
Q ss_pred CC--CCCCE---EEEECCCCCHHH
Q ss_conf 78--87872---689358987999
Q gi|254780858|r 246 GH--VNYPC---TVEESMSITFDE 264 (425)
Q Consensus 246 G~--V~~Pg---~~evp~Gt~l~e 264 (425)
|- |.--| ....-+..++.|
T Consensus 291 GGLgVDYdGs~s~~~~S~NYsl~E 314 (634)
T PRK05354 291 GGLGVDYDGTRSQSDSSVNYSLQE 314 (634)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 862667677665886676769999
No 75
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=29.95 E-value=13 Score=17.47 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC-CCCCHH-----HHHHHHHHHHH
Q ss_conf 387346651799428652899999999999876279988523028999999999982-899989-----99999999986
Q gi|254780858|r 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-GIAQKR-----EIDLLYEVSKN 384 (425)
Q Consensus 311 ~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~-G~a~~~-----Dl~~L~~la~~ 384 (425)
.|..||..++..-=+++.+|+.+-.++=-.+ ||||. -+=-.=.-+.|.+ |++.-. --+.++.||+.
T Consensus 21 ~G~~LGyaa~~F~v~~dp~ve~id~lLPQTQ---CGqCG-----ypGC~PYAeAia~NGea~In~C~PGG~a~~~~lA~~ 92 (213)
T TIGR01944 21 LGAILGYAAMRFHVEADPIVERIDALLPQTQ---CGQCG-----YPGCRPYAEAIAENGEALINKCPPGGEAVILKLAEL 92 (213)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC---CCCCC-----CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8787756532113888878999986477554---64678-----887415899998607877878888707899999998
Q ss_pred HC
Q ss_conf 22
Q gi|254780858|r 385 IE 386 (425)
Q Consensus 385 i~ 386 (425)
|.
T Consensus 93 L~ 94 (213)
T TIGR01944 93 LG 94 (213)
T ss_pred HC
T ss_conf 38
No 76
>pfam01950 FBPase_3 Fructose-1,6-bisphosphatase. This is a family of bacterial and archaeal fructose-1,6-bisphosphatases (FBPases). FBPase catalyses the hydrolysis of D-fructose-1,6-bisphosphate (FBP) to D-fructose-6-phosphate (F6P) and orthophosphate and is an essential regulatory enzyme in the glyconeogenic pathway.
Probab=29.51 E-value=39 Score=14.16 Aligned_cols=262 Identities=20% Similarity=0.295 Sum_probs=118.3
Q ss_pred HHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCC--------HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
Q ss_conf 67551787677989999779989999998269--------8999999998397768757112455687423565688619
Q gi|254780858|r 8 IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--------RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79 (425)
Q Consensus 8 ~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~--------~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~y 79 (425)
|.|...+.|...++.-- |++..++-+.. -++++..--.-+++|+| |---.+++.-+ ++ +..
T Consensus 57 imTH~~G~dn~eiH~LA----W~aF~~~tevAK~l~LYGAGQDLL~DaFSGNvkGmG----PgvAEmEf~ER-~s--EP~ 125 (364)
T pfam01950 57 IMTHTKGVDNEEIHKLA----WDAFMAATEVAKELKLYGAGQDLLKDAFSGNVKGMG----PGVAEMEFEER-PS--EPF 125 (364)
T ss_pred EEECCCCCCCHHHHHHH----HHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCC----CCEEEEEECCC-CC--CCE
T ss_conf 67436678967899999----999999999998716544660343023576626778----74268872257-88--867
Q ss_pred EEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 998576778486004-8999862589999999999971836389981555178999999999999868997767678866
Q gi|254780858|r 80 LVVNADESEPGTCKD-RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158 (425)
Q Consensus 80 vv~N~~E~EPgt~kD-r~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~ 158 (425)
+|--+|-+|||.|.= -|.|-.+|..-. |++ +.+++..||.
T Consensus 126 ivF~aDKTePGAfNlPlY~~FaDPfnt~-GLv--------------------------------------idp~mh~Gf~ 166 (364)
T pfam01950 126 IVFAADKTEPGAFNLPLYKMFADPFNTA-GLV--------------------------------------IDPSMHEGFR 166 (364)
T ss_pred EEEEECCCCCCCCCCHHHHHHCCCCCCC-CEE--------------------------------------ECCCCCCCEE
T ss_conf 9998538888733216788752855676-504--------------------------------------3700026715
Q ss_pred CEEEEEECCCC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCC
Q ss_conf 40699745751---001107889986308999868889986227830378500028999999999960568886338987
Q gi|254780858|r 159 VDIIVHHGAGA---YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235 (425)
Q Consensus 159 ~~i~v~~g~g~---Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~ 235 (425)
|+|.=+. .+. +-|=||+--|.++-|-.+.=-.|-=++-.- |.+-.|..++-|.+++- .| .|..+
T Consensus 167 FeV~Dv~-~~k~i~l~~Pee~Ydllalig~~~RyvIk~V~~k~~---ge~aav~St~RL~~iAG-------~Y--vGKDD 233 (364)
T pfam01950 167 FEVLDVI-EHKKIELSTPEEMYDLLALIGAPGRYVIKRVYRRSD---GEIAAVVSTERLNLIAG-------KY--VGKDD 233 (364)
T ss_pred EEEEECC-CCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCC---CCEEEEEEHHHHHHHCC-------EE--CCCCC
T ss_conf 8999713-662787429168889999847987368999875589---97679976667776417-------11--07888
Q ss_pred CCCEEEEECCCCCCCCEEEEECCCC-CHHHHHHHH------HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 7430476426788787268935898-799999986------15567871100489852456565321002456334220-
Q gi|254780858|r 236 NRGTKLFSISGHVNYPCTVEESMSI-TFDELIEKH------CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG- 307 (425)
Q Consensus 236 ~~Gtkl~tvsG~V~~Pg~~evp~Gt-~l~eli~~~------~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~- 307 (425)
. -.++...-|. .+.|++|-+ +|.|++. + -||.|++ ..-+-.+.-|+.
T Consensus 234 P--------------V~iVR~Q~gfPA~gEvlepFa~phlV~GwmRGS-H-------~gPlMPV---~~~~a~~trfdgp 288 (364)
T pfam01950 234 P--------------VAIVRAQSGFPAVGEVLEPFAFPHLVAGWMRGS-H-------NGPLMPV---PLNDAVPTRFDGP 288 (364)
T ss_pred C--------------EEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCC-C-------CCCCCCE---ECCCCCCCCCCCC
T ss_conf 6--------------699985688996455441244651113434565-6-------7863311---1366775467899
Q ss_pred --HHHCCCCCCCCEEE----EECCCCCHHHHHHHHHHHHHHH--HCCCCCCCCCHHHHHH
Q ss_conf --11038734665179----9428652899999999999876--2799885230289999
Q gi|254780858|r 308 --LKEMGSGLGTAAVI----VMDRSTDIIKAIWRLSVFYKHE--SCGQCTPCREGTGWMM 359 (425)
Q Consensus 308 --l~~~Gs~LGsg~ii----V~de~~~iv~~~~~~~~F~a~E--SCGkCtPCR~Gt~~l~ 359 (425)
+.+.|..+-.|-++ .||+ .-.|.+++.+..-+.+ +-|---|-|.....|.
T Consensus 289 PrV~algFql~~GkL~GP~D~Fdd--pafD~~R~~a~~~A~~mRr~Gpf~PhrLp~~emE 346 (364)
T pfam01950 289 PRVIALGFQLHEGKLIGPVDMFDD--PAFDYARRKALEIADYIRRQGPFEPHRLPPEEME 346 (364)
T ss_pred CEEEEEEEEEECCEECCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 768888888617887476224577--3237999999999999996499876658978802
No 77
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=29.44 E-value=20 Score=16.17 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 28999999999982899989999999999862
Q gi|254780858|r 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 (425)
Q Consensus 354 Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i 385 (425)
+|++-+.-.++...|+ +.|-+.++.-...+
T Consensus 452 ATPKRA~~~EaaL~G~--~W~~~~~~~A~~aL 481 (515)
T TIGR02963 452 ATPKRAAAVEAALLGK--PWDEATVEAAMAAL 481 (515)
T ss_pred CHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
T ss_conf 5115699999985388--53379999999999
No 78
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.95 E-value=40 Score=14.10 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH-----HHHHHHCHHHHHHCCCCCCCCEEEEECC
Q ss_conf 86227830378500028999999-----9999605688863389877430476426
Q gi|254780858|r 195 FPANVGLYGCPTTVNNVESIAVV-----PTILRRGASWYSGFGRENNRGTKLFSIS 245 (425)
Q Consensus 195 ~p~~~Gl~g~PT~V~NVeTla~v-----~~i~~~G~~~y~~~G~~~~~Gtkl~tvs 245 (425)
+|.+.|||.+-|+..-+--||-+ ..|-..=..|..++.....+.-|+=++|
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LS 132 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132 (300)
T ss_pred CHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 81540667567199999999986499689999999999996065654442477753
No 79
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=28.64 E-value=16 Score=16.75 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=39.4
Q ss_pred CCCCCCHHHHH-HH----HHHHHHCHHHHHHCC----CCCCCCEEEE-ECCCCCCCC-----------EEEE-ECCC--C
Q ss_conf 85000289999-99----999960568886338----9877430476-426788787-----------2689-3589--8
Q gi|254780858|r 205 PTTVNNVESIA-VV----PTILRRGASWYSGFG----RENNRGTKLF-SISGHVNYP-----------CTVE-ESMS--I 260 (425)
Q Consensus 205 PT~V~NVeTla-~v----~~i~~~G~~~y~~~G----~~~~~Gtkl~-tvsG~V~~P-----------g~~e-vp~G--t 260 (425)
|=||.-.++|- +| |++=+...+-----| ...+.||-++ ||=|||--= .+|| |-+| +
T Consensus 721 PqVvkSArVMK~AVayL~P~me~~~~~~rvlnGtvee~~~~~G~~vlATVKGDVHDIGKNiV~vvLscNgY~VvdLGvm~ 800 (1265)
T TIGR02082 721 PQVVKSARVMKKAVAYLEPYMEKEKSEDRVLNGTVEEEDSSKGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMV 800 (1265)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCEECCCCCCCCEEEEEEECCCEECCCCCEEEEEEECCCEEEEECCCCC
T ss_conf 11367689999998406764553000485020300134588875899984475510265233268707884898635258
Q ss_pred CHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 799999986155678711004898524565653210
Q gi|254780858|r 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296 (425)
Q Consensus 261 ~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~ 296 (425)
|...||+.+ ++.+|=++| ++|.|+++
T Consensus 801 P~e~IL~~A--------~~~~AD~Ig--lSGLitpS 826 (1265)
T TIGR02082 801 PVEKILEAA--------KDHNADVIG--LSGLITPS 826 (1265)
T ss_pred CHHHHHHHH--------HHCCCCEEE--ECCCCHHH
T ss_conf 856899999--------843898998--45655012
No 80
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=28.55 E-value=25 Score=15.42 Aligned_cols=13 Identities=15% Similarity=-0.074 Sum_probs=7.9
Q ss_pred EEEEEE--CCCCCCC
Q ss_conf 199985--7677848
Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425)
Q Consensus 78 ~yvv~N--~~E~EPg 90 (425)
|++|+| |.=|.|.
T Consensus 21 k~vvl~FWAtWC~pC 35 (123)
T cd03011 21 KPVLVYFWATWCPVC 35 (123)
T ss_pred CEEEEEEECCCCCCH
T ss_conf 989999993878136
No 81
>pfam01799 Fer2_2 [2Fe-2S] binding domain.
Probab=27.91 E-value=25 Score=15.44 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999987627998852
Q gi|254780858|r 331 KAIWRLSVFYKHESCGQCTPC 351 (425)
Q Consensus 331 ~~~~~~~~F~a~ESCGkCtPC 351 (425)
.+-..|.+..+-+ ||.|||-
T Consensus 13 ~vQ~af~~~~~~Q-CGfCtPG 32 (75)
T pfam01799 13 PVQQAFIEHGAVQ-CGYCTPG 32 (75)
T ss_pred HHHHHHHHHCCCC-CCCCCHH
T ss_conf 9999999918970-7887504
No 82
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=27.79 E-value=17 Score=16.59 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78726893589879999998615567871100489852456565321002456334
Q gi|254780858|r 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304 (425)
Q Consensus 249 ~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~~~ld 304 (425)
+..-+-||..||-|.|++.+++||+.= + +-+|+|.-+. .|.+|+|
T Consensus 116 ~~AH~aEV~~gtGLGDVvAq~~GGlVi--R----~~pG~Pg~~~-----vd~Ip~~ 160 (283)
T COG1829 116 RIAHVAEVENGTGLGDVVAQYTGGLVI--R----VKPGGPGEGE-----VDRIPVP 160 (283)
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCEEE--E----ECCCCCCEEE-----EEEEECC
T ss_conf 988899987178704788875085799--8----3189998578-----9886048
No 83
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase; InterPro: IPR006449 This family of sequences describe farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs lack the C-terminal predicted transmembrane region universally conserved among members of this family and therefore are not included in this group. These enzymes catalyse the formation of squalene by the reductive dimerisation of two farnesyl diphosphate molecules in a two-step reaction. This reaction occurs at the final branch point of the isoprenoid biosynthesis pathway, and is the first committed step in cholesterol biosynthesis. 2 farnesyl diphosphate ---> presqualene diphosphate ---> squalene The human enzyme (P37268 from SWISSPROT) is a membrane-bound monomer which folds as a single domain . A large channel surrounded by five alpha helices runs through the centre of the protein. One end of this channel is exposed to solvent, while the other is completely enclosed and surrounded by hydrophobic residues. The two half reactions occur at different active sites in this channel. The first half reaction occurs at one end of the channel, then the intermediate is thought to move into the enclosed pocket where the second half reaction occurs. ; GO: 0004310 farnesyl-diphosphate farnesyltransferase activity, 0008610 lipid biosynthetic process, 0016021 integral to membrane.
Probab=27.68 E-value=35 Score=14.48 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCE
Q ss_conf 7784860048999862589999999999971836389981555178999999999999868997767-----67886640
Q gi|254780858|r 86 ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-----SKLGYDVD 160 (425)
Q Consensus 86 E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-----~~~g~~~~ 160 (425)
|+.|- -|||.||+.-|+-.+| |.=++.+|.+.|+-+.+--..=.+......+ ..|--++|
T Consensus 76 ~s~P~-~~dr~lL~~F~~v~~e--------------F~~L~~~YQevI~dIT~rMG~GMA~f~~~~~~n~ngv~Tv~dyD 140 (350)
T TIGR01559 76 ESDPN-EKDRQLLDDFPVVSLE--------------FLKLKPKYQEVIADITKRMGNGMADFVLKEVTNENGVDTVEDYD 140 (350)
T ss_pred CCCCC-HHHHHHHHHHHHHHHH--------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHC
T ss_conf 88386-6677775420279998--------------73278543268999877611247888630466765200187626
Q ss_pred EEEEECCCC
Q ss_conf 699745751
Q gi|254780858|r 161 IIVHHGAGA 169 (425)
Q Consensus 161 i~v~~g~g~ 169 (425)
..-|.+||-
T Consensus 141 ~YCHYVAGl 149 (350)
T TIGR01559 141 KYCHYVAGL 149 (350)
T ss_pred CCCCEEEEE
T ss_conf 767266424
No 84
>TIGR01020 rpsE_arch ribosomal protein S5; InterPro: IPR005711 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=27.61 E-value=22 Score=15.80 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=49.3
Q ss_pred HHCCCEEEEEECC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC--CCCHHHHHHHHHCCCCCCCCC
Q ss_conf 7183638998155-5178999999999999868997767678866406997457510--011078899863089998688
Q gi|254780858|r 115 AIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAY--ICGEETALLESLEGKKGQPRL 191 (425)
Q Consensus 115 a~gA~~~~I~ir~-ey~~~~~~l~~ai~ea~~~g~lg~~~~~g~~~~i~v~~g~g~Y--i~GeEtali~sieG~r~~Pr~ 191 (425)
+||-+.||+++=- .-.+-.-++++||..|. +++ |.|++|=|.- -||++..+=-..+||-|=.+.
T Consensus 84 vVGn~dGYVGlG~gkA~eV~~AIrKAI~~AK------------lnI-i~VrRGCGsWec~cG~pHsvPfkV~Gk~GSV~V 150 (220)
T TIGR01020 84 VVGNRDGYVGLGKGKAKEVAPAIRKAINNAK------------LNI-IPVRRGCGSWECGCGRPHSVPFKVSGKSGSVRV 150 (220)
T ss_pred EEECCCCCEEECCCCCCHHHHHHHHHHHHCC------------CCE-EEEECCCCCCCCCCCCCCCCCEEEEECCCEEEE
T ss_conf 9857898176234631003468999997247------------143-566405676346578885334565000004899
Q ss_pred CC-CCCCCCCC
Q ss_conf 89-98622783
Q gi|254780858|r 192 KP-PFPANVGL 201 (425)
Q Consensus 192 kP-P~p~~~Gl 201 (425)
+- |=|-=.||
T Consensus 151 ~LiPAP~G~GL 161 (220)
T TIGR01020 151 RLIPAPKGVGL 161 (220)
T ss_pred EEECCCCCCEE
T ss_conf 98749996238
No 85
>KOG0910 consensus
Probab=27.52 E-value=40 Score=14.10 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=12.6
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 99885230289999999999
Q gi|254780858|r 346 GQCTPCREGTGWMMRVMERL 365 (425)
Q Consensus 346 GkCtPCR~Gt~~l~~il~~i 365 (425)
-+|.|||.=.+++.++....
T Consensus 71 ~WCgPCk~l~P~l~~~~~~~ 90 (150)
T KOG0910 71 EWCGPCKMLGPILEELVSEY 90 (150)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 75743767469999987753
No 86
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=27.30 E-value=42 Score=13.91 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=5.4
Q ss_pred HHHCCCEEEEEECC
Q ss_conf 97183638998155
Q gi|254780858|r 114 FAIGAHCAFIYVRG 127 (425)
Q Consensus 114 ~a~gA~~~~I~ir~ 127 (425)
+..--+.|++.+++
T Consensus 225 ~~~llD~Giw~ls~ 238 (974)
T PRK13412 225 HLFLMDIGIWLLSD 238 (974)
T ss_pred CCEEEEEEEEEECC
T ss_conf 96400005999884
No 87
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=26.92 E-value=43 Score=13.87 Aligned_cols=135 Identities=16% Similarity=0.220 Sum_probs=87.7
Q ss_pred EECCCC--CCCCEEEEECCCCCHHHH-----------------------------HHHHHC------CCCCCCCCEEEEE
Q ss_conf 642678--878726893589879999-----------------------------998615------5678711004898
Q gi|254780858|r 242 FSISGH--VNYPCTVEESMSITFDEL-----------------------------IEKHCG------GIRGGWDNLLAVI 284 (425)
Q Consensus 242 ~tvsG~--V~~Pg~~evp~Gt~l~el-----------------------------i~~~~G------G~~~~~~~~kav~ 284 (425)
-||+|+ +.+-.-+--|+|+|+=+- |-.|.| |+.-.. .....+
T Consensus 169 aTV~GNR~~D~~N~FVfP~GMPIV~~YL~G~~~G~s~~~vY~~aKQ~lsprDiE~IA~ySGLPVyVKG~Q~~E-D~~~al 247 (368)
T TIGR02708 169 ATVGGNREVDKRNGFVFPVGMPIVQEYLPGEGAGKSLDYVYKSAKQKLSPRDIEEIAAYSGLPVYVKGPQCPE-DADRAL 247 (368)
T ss_pred CCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCHH-HHHHHH
T ss_conf 6335774413558736115560333107887677406666655411578100899972179836860788866-899999
Q ss_pred ECCCCCCCC---CCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 524565653---21002456334220110387346651799428652899999999999876279988523028999999
Q gi|254780858|r 285 PGGSSVPCL---PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361 (425)
Q Consensus 285 ~GG~~~g~l---~~~~ld~~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~i 361 (425)
--|.||=|+ ..++|+..|-.||+|.+.--.+----=||||- |.+|...+
T Consensus 248 ~AGASGIWV~NHG~RQl~~~PaaFD~L~~vAE~V~~rVPIVFDS----------------------------GvRRG~Hv 299 (368)
T TIGR02708 248 KAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDS----------------------------GVRRGQHV 299 (368)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC----------------------------CCCCHHHH
T ss_conf 72886257604775023678752000699999852855668508----------------------------84325789
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999828999899999999998622366677650247999999863889999998
Q gi|254780858|r 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416 (425)
Q Consensus 362 l~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI 416 (425)
++.|.+|- || . .+..-.+-||.-+...=+.+.+++|.+|++.=+
T Consensus 300 ~KALASGA----D~---V----AlGRPv~yGLAlGG~~G~~~V~~~l~~~L~~VM 343 (368)
T TIGR02708 300 FKALASGA----DL---V----ALGRPVIYGLALGGSVGARQVLEYLNKELKRVM 343 (368)
T ss_pred HHHHHCCC----CE---E----ECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99872356----44---3----013235666550102218999999998877776
No 88
>pfam04363 DUF496 Protein of unknown function (DUF496).
Probab=26.84 E-value=43 Score=13.86 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 899999999998622366677650247999999863889999998651
Q gi|254780858|r 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419 (425)
Q Consensus 372 ~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~~ 419 (425)
..-+.+|..+.++++.. ++..-+...+.+.+++||.+|+++
T Consensus 32 qKRV~LL~NL~~YI~~~-------Ms~e~i~~II~nMr~DYEdRVDDy 72 (95)
T pfam04363 32 QKRVLLLDNLLDYIKPD-------MSIEEIRAIIENMRDDYEDRVDDY 72 (95)
T ss_pred HHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998899986799-------989999999998786788746788
No 89
>pfam06251 DUF1017 SLBB-domain like (DUF1017). This family of uncharacterized bacterial proteins contains a central beta-grasp like domain related to the SLBB domain.
Probab=26.82 E-value=43 Score=13.85 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=48.8
Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 4764267887872689358987999999861556787-110048985245656532100245633422011038734665
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~-~~~~kav~~GG~~~g~l~~~~ld~~~ld~~~l~~~Gs~LGsg 318 (425)
.-++|.|.|.+|+.+...-|.++.+-|+. +|...+. ...+--+++-|-..-. +..-+.. .. ..+--|
T Consensus 73 ~~V~V~G~V~~~~~~~~~~~~~v~dYl~~-~g~~~~Ad~s~~~VIqPdG~v~~~-~va~Wn~--------~~--~~~~PG 140 (173)
T pfam06251 73 TTVTLLGAVSQPGNVPWQPGASVKDYLKS-AGLLSGADKSYVWVIQPDGRAQKH-PVAYWNR--------QH--QEIAPG 140 (173)
T ss_pred CEEEEEECCCCCCEEECCCCCCHHHHHHH-CCCCCCCCCCEEEEEECCCEEEEC-CCEECCC--------CC--CCCCCC
T ss_conf 88999965689740331699999999983-797566885407999179708885-5020036--------87--778999
Q ss_pred EEEEE--CCC---CCHHHHHHHHHHHHHH
Q ss_conf 17994--286---5289999999999987
Q gi|254780858|r 319 AVIVM--DRS---TDIIKAIWRLSVFYKH 342 (425)
Q Consensus 319 ~iiV~--de~---~~iv~~~~~~~~F~a~ 342 (425)
++|++ +++ .+..++...+++..++
T Consensus 141 s~I~Vpf~~~~l~~~~~~Ln~~I~~lL~~ 169 (173)
T pfam06251 141 ATIYVGFSDSSLPDDYSNLNEDIVELLRN 169 (173)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89998467333682387899999999985
No 90
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=26.76 E-value=17 Score=16.50 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCC--------CCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 62034367551787677989999779989999998269899999999839--------7768757112455687423565
Q gi|254780858|r 2 LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASG--------LRGRGGAGFSTGMKWSFMPKVC 73 (425)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sg--------l~GrGGAgFPt~~Kw~~~~~~~ 73 (425)
|.|+.-||......+..-|..|..-=..--+| .+-|++.+++.| ++|||| ++...+
T Consensus 17 f~de~~~~~~tlrH~~eEL~~f~~v~dQfeFR------~~~i~~~L~e~Gi~~~~l~AvVgRGG----------LLkPi~ 80 (353)
T TIGR02707 17 FEDEKPLFEETLRHSVEELAKFKNVIDQFEFR------KQVILEVLEEKGINISKLDAVVGRGG----------LLKPIE 80 (353)
T ss_pred EECCEEEEEECCCCCHHHHHCCCCEEECHHHH------HHHHHHHHHHCCCCHHHEEEEEECCC----------CCCCCC
T ss_conf 65780678644625878730566402112689------99999998740887124315797277----------023338
Q ss_pred CCCCEEEE
Q ss_conf 68861999
Q gi|254780858|r 74 SDRPHYLV 81 (425)
Q Consensus 74 ~~~~~yvv 81 (425)
++. |+|
T Consensus 81 GGT--Y~V 86 (353)
T TIGR02707 81 GGT--YLV 86 (353)
T ss_pred CCE--EEE
T ss_conf 960--477
No 91
>pfam09606 Med15 ARC105 or Med15 subunit of Mediator complex non-fungal. The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Probab=26.68 E-value=43 Score=13.84 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=7.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999862236
Q gi|254780858|r 376 DLLYEVSKNIEGR 388 (425)
Q Consensus 376 ~~L~~la~~i~~~ 388 (425)
++|..|...++..
T Consensus 737 ~lLntWe~svrQa 749 (768)
T pfam09606 737 HLLNTWEMSVRQA 749 (768)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999987
No 92
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=26.51 E-value=44 Score=13.82 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999997183638998155517899999999999
Q gi|254780858|r 108 GCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142 (425)
Q Consensus 108 G~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~e 142 (425)
-..+.|+|+||++.++. ++-+...+.++.-.+.
T Consensus 21 Hv~LtaRAfGA~~i~l~--~~D~~~~etv~~V~~r 53 (175)
T PRK03958 21 HVGLTARALGADKILFA--SEDEHVKESVEDIVER 53 (175)
T ss_pred HHHHHHHHHCCCEEEEC--CCCHHHHHHHHHHHHH
T ss_conf 88898887268767876--8876689999999986
No 93
>TIGR02264 gmx_para_CXXCG Myxococcus xanthus double-CXXCG motif paralogous family; InterPro: IPR011750 This entry consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment..
Probab=26.30 E-value=41 Score=14.00 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=5.7
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 9999998397768757
Q gi|254780858|r 43 IINEVKASGLRGRGGA 58 (425)
Q Consensus 43 ii~~v~~sgl~GrGGA 58 (425)
-+|.++++|+||+-||
T Consensus 129 ALE~L~~~GvRGL~Ga 144 (247)
T TIGR02264 129 ALERLRAAGVRGLQGA 144 (247)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999987413444567
No 94
>TIGR02723 phenyl_P_alpha phenylphosphate carboxylase, alpha subunit; InterPro: IPR014095 Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This alpha subunit is homologous to the beta subunit and, more broadly, to UbiD family decarboxylases..
Probab=26.27 E-value=44 Score=13.79 Aligned_cols=38 Identities=39% Similarity=0.644 Sum_probs=29.1
Q ss_pred HCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 03873466--51799428652899999999999876279988523
Q gi|254780858|r 310 EMGSGLGT--AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352 (425)
Q Consensus 310 ~~Gs~LGs--g~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR 352 (425)
+.||.||- .-++|.||.+++..+-.-+-.| |-+|-|=|
T Consensus 369 afGsklGPWfhmvmvvddqtdifnWdevyhaf-----CtrCnPer 408 (485)
T TIGR02723 369 AFGSKLGPWFHMVMVVDDQTDIFNWDEVYHAF-----CTRCNPER 408 (485)
T ss_pred HHCCCCCCEEEEEEEEECCCCCCCHHHHHHHH-----HCCCCCCC
T ss_conf 63143576178999980764301134455454-----22457545
No 95
>PHA01735 hypothetical protein
Probab=26.17 E-value=44 Score=13.78 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHH
Q ss_conf 999999999828999899999999998622366677650247999999863889
Q gi|254780858|r 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 (425)
Q Consensus 357 ~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~d 410 (425)
...+++.||.+|+++..||....++.. ...|-+... -.+|+..+...-|+
T Consensus 17 lt~ell~rIksGeAttaDL~aA~~~LK---dN~I~gva~-egsPL~~La~~lP~ 66 (76)
T PHA01735 17 LTNELLSRIKSGEATTADLRAACDWLK---SNDITGVAV-DGSPLAKLAGLMPQ 66 (76)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH---HCCCCEEEC-CCCHHHHHHHHCCC
T ss_conf 999999986078887999999999999---879662367-99869999875899
No 96
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=25.11 E-value=46 Score=13.65 Aligned_cols=66 Identities=21% Similarity=0.470 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHH
Q ss_conf 99999999998762799885230289999999999828999899999999998622366677650247999999863889
Q gi|254780858|r 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 (425)
Q Consensus 331 ~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~d 410 (425)
.++..+.+||.+ +| .+..+..+.|+|...+ |....-|..-. .-.+.++.|=+
T Consensus 72 rA~~vLr~~y~~-~~-------s~i~r~lr~L~r~l~~----------------~a~~~~c~v~e----~~~TtlkdFLe 123 (138)
T smart00190 72 RALKVLRNFYFH-NC-------SAILKTLRKLDRNCSG----------------LASQTSCTVNE----AKDTTLADFLE 123 (138)
T ss_pred HHHHHHHHHHHH-HH-------HHHHHHHHHHHHCCCC----------------CCCCCCCCCCC----CCHHHHHHHHH
T ss_conf 999999999883-10-------7999999999720322----------------46789878542----10558999999
Q ss_pred HHHHHHHH-HCCCCC
Q ss_conf 99999865-189999
Q gi|254780858|r 411 LIEERIDQ-YHRCNF 424 (425)
Q Consensus 411 Efe~hI~~-~~rCp~ 424 (425)
....++++ |.+|+|
T Consensus 124 ~Lk~imq~ky~k~~~ 138 (138)
T smart00190 124 RLKSIMREKYSKGSF 138 (138)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999998614689
No 97
>pfam06733 DEAD_2 DEAD_2. This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast.
Probab=25.00 E-value=45 Score=13.71 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 651799428652899999999999
Q gi|254780858|r 317 TAAVIVMDRSTDIIKAIWRLSVFY 340 (425)
Q Consensus 317 sg~iiV~de~~~iv~~~~~~~~F~ 340 (425)
.+.|+||||..++.+++...+.|.
T Consensus 139 ~~~IvI~DEAHNl~~~~~~~~S~~ 162 (168)
T pfam06733 139 KNSIVIFDEAHNIEDVCISSLSFE 162 (168)
T ss_pred CCEEEEEECCCCHHHHHHHHCCCE
T ss_conf 884999988137599999961876
No 98
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=24.71 E-value=28 Score=15.13 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=10.5
Q ss_pred CEEEEECCCC--CCCCEE-EEECCCC
Q ss_conf 3047642678--878726-8935898
Q gi|254780858|r 238 GTKLFSISGH--VNYPCT-VEESMSI 260 (425)
Q Consensus 238 Gtkl~tvsG~--V~~Pg~-~evp~Gt 260 (425)
|.|=||+.|| |+--.= |.=.-|.
T Consensus 64 G~~AFCsGGDQ~irg~~GgY~d~~G~ 89 (278)
T TIGR01929 64 GDKAFCSGGDQKIRGKSGGYIDESGV 89 (278)
T ss_pred CCEEEEECCCEEEECCCCCEECCCCC
T ss_conf 87126536852375587753557872
No 99
>PRK02287 hypothetical protein; Provisional
Probab=24.24 E-value=48 Score=13.54 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=27.3
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9986888998-6227830378500028999999999960
Q gi|254780858|r 186 KGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRR 223 (425)
Q Consensus 186 r~~Pr~kPP~-p~~~Gl~g~PT~V~NVeTla~v~~i~~~ 223 (425)
++..|.=|++ ++.-==||||.-.+-||-+|+--.|+-.
T Consensus 83 ~~~~R~LP~LvAaNPVNYGkP~kLs~vEAlAAaLyI~G~ 121 (169)
T PRK02287 83 AGNHRRLPFLLAANPVNYGKPCKLSSVEAFAAALYILGY 121 (169)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 687666650312488666887621279999999999499
No 100
>pfam09795 Atg31 Autophagy-related protein 31. Autophagy is an intracellular degradation system that responds to nutrient starvation. Cis1/Atg31 has been shown to be required for autophagosome formation in Saccharomyces cerevisiae. It interacts with Atg17.
Probab=24.18 E-value=45 Score=13.74 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHCCCC-----------CCCCCEEEEEECCCCCC
Q ss_conf 76875711245568742356-----------56886199985767784
Q gi|254780858|r 53 RGRGGAGFSTGMKWSFMPKV-----------CSDRPHYLVVNADESEP 89 (425)
Q Consensus 53 ~GrGGAgFPt~~Kw~~~~~~-----------~~~~~~yvv~N~~E~EP 89 (425)
-|-++|=|||-+|+=|-... ..+-.-++|++.+|+--
T Consensus 31 ~g~~~~MFpTnIKYIFEDDdd~~~d~~~~~~~~~ieNVIIV~lDesg~ 78 (159)
T pfam09795 31 TGSENTMFPTNIKYIFEDDDDSQHDSDDLEINTDIENVIIVDLDESGS 78 (159)
T ss_pred CCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 787651310130589617874456632013357854489997168874
No 101
>KOG1547 consensus
Probab=23.61 E-value=49 Score=13.46 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=7.5
Q ss_pred CCCCCCEEEEEEC
Q ss_conf 7886640699745
Q gi|254780858|r 154 KLGYDVDIIVHHG 166 (425)
Q Consensus 154 ~~g~~~~i~v~~g 166 (425)
+.||+|+|-|+-.
T Consensus 42 k~GF~FNIMVVgq 54 (336)
T KOG1547 42 KTGFDFNIMVVGQ 54 (336)
T ss_pred HCCCCEEEEEEEC
T ss_conf 6267257999806
No 102
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase; InterPro: IPR004816 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) , . Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds . The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids . Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA . Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I). This entry represents Metazoan class I HMG-CoA reductases, which are membrane-bound glycoproteins that remains in the endoplasmic reticulum after synthesis and glycosylation .; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050661 NADP binding, 0008299 isoprenoid biosynthetic process, 0005789 endoplasmic reticulum membrane.
Probab=23.60 E-value=49 Score=13.46 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC-CCCEEEEEECCCCC-CCCCCCH
Q ss_conf 9999826989999999983977687571124556874235656-88619998576778-4860048
Q gi|254780858|r 32 VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-DRPHYLVVNADESE-PGTCKDR 95 (425)
Q Consensus 32 l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~-~~~~yvv~N~~E~E-Pgt~kDr 95 (425)
++|.++|+-|.|+-.+-. +-..+||-+..+... ...+.=+.||++== |....++
T Consensus 361 ~~r~~~m~~~~i~t~~~~----------~~l~vkyiFf~~~~tyPe~t~sl~~G~~vv~P~~~~~~ 416 (988)
T TIGR00920 361 LSRLLTMDLDYIVTLILA----------IVLAVKYIFFSQRETYPESTVSLKNGDPVVNPVSDQKK 416 (988)
T ss_pred HHHCCCCCHHHHHHHHHH----------HHHHHHHHCCCCCCCCCCCCEEEECCCEEECCCCCHHH
T ss_conf 961378558899999999----------98876431005634377441354048510278986124
No 103
>KOG1769 consensus
Probab=23.14 E-value=50 Score=13.40 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=43.9
Q ss_pred EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 6426788787268935898799999986155678711004898524565653210024
Q gi|254780858|r 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299 (425)
Q Consensus 242 ~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~~ld 299 (425)
+-|.|+=..--+|.|...|||+.|.+.||--.--.++.|+.++-|-+...-=++++|+
T Consensus 23 LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlfdG~rI~~~~TP~~L~ 80 (99)
T KOG1769 23 LKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLE 80 (99)
T ss_pred EEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCCHHHHC
T ss_conf 8983478978999962388599999999997199642489998880867888934518
No 104
>pfam04722 Ssu72 Ssu72-like protein. The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs.
Probab=23.07 E-value=50 Score=13.39 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=26.8
Q ss_pred HHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 886338987743047642678-87872689358987999999861
Q gi|254780858|r 227 WYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270 (425)
Q Consensus 227 ~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~ 270 (425)
.-+++|+.. .+-+-|. ..+|.+|+ +|||..++-+++-
T Consensus 29 ~V~SfGTGs-----~VkLPGps~d~PnvY~--FgT~Y~~iy~dL~ 66 (193)
T pfam04722 29 NVRSFGTGS-----AVKLPGPSIDKPNVYD--FGTPYDEIYNDLE 66 (193)
T ss_pred CEEECCCCC-----CCCCCCCCCCCCCCCC--CCCCHHHHHHHHH
T ss_conf 657406897-----4348899899986414--8998999999999
No 105
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=22.60 E-value=23 Score=15.65 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHHHHHHHHHCCCCCCC
Q ss_conf 89998625899999999999718363899815551789---99999999999868997767
Q gi|254780858|r 95 RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE---RESLQAAVDECYASGLLGSN 152 (425)
Q Consensus 95 r~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~---~~~l~~ai~ea~~~g~lg~~ 152 (425)
+..|+..=...|+-++--+...-..+.++ +. -...++|++|..-.|+.|+|
T Consensus 83 h~~L~~~l~~~L~~~~~~~~~~~~~~~~v-------D~hWr~~~~~~a~A~~AG~Gw~GkN 136 (297)
T TIGR00276 83 HDVLTFKLSDALEEELYQAVPILASKVLV-------DLHWRGPISEKALAERAGIGWVGKN 136 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCE-------ECCCCCCCCCCHHHHHCCCCEEEEC
T ss_conf 99999999999988655320443445411-------0122232012179985799615420
No 106
>PRK12928 lipoyl synthase; Provisional
Probab=22.51 E-value=13 Score=17.35 Aligned_cols=187 Identities=20% Similarity=0.241 Sum_probs=102.6
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 85767784860048999862589999999999971836389981--5551789-99999999999868997767678866
Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV--RGEFIRE-RESLQAAVDECYASGLLGSNSKLGYD 158 (425)
Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~i--r~ey~~~-~~~l~~ai~ea~~~g~lg~~~~~g~~ 158 (425)
||-+-+-|.. +=.+.|..|-+.+ ..+|-+.++|-- ||+-++. ...+.+.|++.++.. + +
T Consensus 77 C~V~tg~P~~-----lD~~EP~rvA~av----~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~---P------~ 138 (290)
T PRK12928 77 CQVAKGRPMP-----LDPDEPERVAEAV----AALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARN---P------G 138 (290)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHH----HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHC---C------C
T ss_conf 1553799898-----9803479999999----9838976898412367886645299999999998459---9------8
Q ss_pred CEEEEEECCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCC-
Q ss_conf 4069974575100110-78899863089998688899862278303785000289999999999605688863389877-
Q gi|254780858|r 159 VDIIVHHGAGAYICGE-ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN- 236 (425)
Q Consensus 159 ~~i~v~~g~g~Yi~Ge-Etali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~- 236 (425)
..|+|-.. =-.|. |.||=.-++-+ | + + +-||+||+-.+...+|.++...+++..=+.
T Consensus 139 ~~iEvLiP---DF~G~~~~al~~v~~a~----------p-d--V-----~nHNiETV~rL~~~VRp~A~Y~rSL~vL~~a 197 (290)
T PRK12928 139 TGIEVLTP---DFWGGVARALATVLAAK----------P-D--C-----FNHNLETVPRLQKAVRRGADYQRSLDLLARA 197 (290)
T ss_pred CEEEEECH---HHCCCHHHHHHHHHHCC----------C-H--H-----HHCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 67997071---11368789999998468----------5-4--6-----5455012043171248855089999999999
Q ss_pred --CCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECC---CCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf --430476426788787268935898799999986155678711004898524---565653210024563342201103
Q gi|254780858|r 237 --RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG---SSVPCLPAGQMRGAIMDYDGLKEM 311 (425)
Q Consensus 237 --~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG---~~~g~l~~~~ld~~~ld~~~l~~~ 311 (425)
....++|=|| +-|-+|-+-.|+++.+--=-..| ..-+-.|- |+-.-+|...+- .|-.|+.++..
T Consensus 198 k~~~~~i~TKSg-------iMvGLGEt~eEv~~~~~DLr~~g---vdilTiGQYL~Ps~~h~pV~ryv-~P~eF~~~~~~ 266 (290)
T PRK12928 198 KELAPGIPTKSG-------LMLGLGETEDEVIETLRDLRAVD---CDRLTIGQYLRPSLAHLPVQRYW-TPEEFEALGQI 266 (290)
T ss_pred HHHCCCCEEEEE-------EEEECCCCHHHHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCEECC-CHHHHHHHHHH
T ss_conf 973888524134-------58860588999999999999819---98998240258886668833356-98999999999
Q ss_pred CCCCCCC
Q ss_conf 8734665
Q gi|254780858|r 312 GSGLGTA 318 (425)
Q Consensus 312 Gs~LGsg 318 (425)
+-.+|--
T Consensus 267 a~~~GF~ 273 (290)
T PRK12928 267 ARELGFK 273 (290)
T ss_pred HHHCCCC
T ss_conf 9976996
No 107
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=22.50 E-value=52 Score=13.32 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=43.7
Q ss_pred HCCCCCCCCCH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------H-CCCCC----------CCCCHHHHHHHHHH
Q ss_conf 27998852302--899999999998289998999999999986------2-23666----------77650247999999
Q gi|254780858|r 344 SCGQCTPCREG--TGWMMRVMERLVKGIAQKREIDLLYEVSKN------I-EGRTI----------CALGDAAAWPIQGL 404 (425)
Q Consensus 344 SCGkCtPCR~G--t~~l~~il~~i~~G~a~~~Dl~~L~~la~~------i-~~~S~----------C~lG~~a~~pv~s~ 404 (425)
.|..|.||-.| .+...++++.+....-....--....+... . ..+|- |......+..++.+
T Consensus 297 ~C~yC~PCP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq~l~Ip~~Lk~v 376 (391)
T COG1453 297 GCRYCLPCPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQHLDIPELLKEV 376 (391)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 25414769888776889999888886245023588999984567567887442245634331533499758678999999
Q ss_pred HHHCHHHHHHH
Q ss_conf 86388999999
Q gi|254780858|r 405 IKNFRPLIEER 415 (425)
Q Consensus 405 l~~F~dEfe~h 415 (425)
-+.|..+--++
T Consensus 377 ~~~leg~~~~~ 387 (391)
T COG1453 377 HEELEGEDLER 387 (391)
T ss_pred HHHHCCHHHHH
T ss_conf 99961057888
No 108
>PRK08445 hypothetical protein; Provisional
Probab=22.45 E-value=52 Score=13.31 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 889999998651899999
Q gi|254780858|r 408 FRPLIEERIDQYHRCNFQ 425 (425)
Q Consensus 408 F~dEfe~hI~~~~rCp~~ 425 (425)
-++|+.+.|++.+|-|-|
T Consensus 320 ~~~~l~~lI~~aG~~P~e 337 (348)
T PRK08445 320 NQAEMIELIKDIGEVPAK 337 (348)
T ss_pred CHHHHHHHHHHCCCCEEE
T ss_conf 999999999985998632
No 109
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=22.38 E-value=39 Score=14.17 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 00028999999999960568886338987743047642678878726893589879999998
Q gi|254780858|r 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268 (425)
Q Consensus 207 ~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~ 268 (425)
-..++|.++....|++-|+---+++ .|+.--|..++|-+..=-||-|+.|.|+.
T Consensus 98 d~~d~e~~~~y~D~lQiGARNmQNF--------~LL~~vG~~~KPVLLKRG~~aTi~EwL~A 151 (262)
T TIGR01361 98 DPRDVEIVAEYADILQIGARNMQNF--------ELLKEVGKQGKPVLLKRGMGATIEEWLEA 151 (262)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCH--------HHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 6256777876511342225412256--------99999722379755307721589999999
No 110
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=22.25 E-value=17 Score=16.56 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECC
Q ss_conf 57510011078899863089998688899862278303785000289999999999605688863389877430476426
Q gi|254780858|r 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245 (425)
Q Consensus 166 g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvs 245 (425)
-+|+|.+|+.+|++-- ..|+ =|.|--++.+. . +-+-|-+.++|--
T Consensus 58 cAGa~lAGkk~ailmQ----------------nsGl------GNsiNal~SL~----------~---ty~iPl~ml~ShR 102 (172)
T COG4032 58 CAGAYLAGKKPAILMQ----------------NSGL------GNSINALASLY----------V---TYKIPLLMLASHR 102 (172)
T ss_pred EHHHHHCCCCCEEEEE----------------CCCC------CHHHHHHHHHH----------H---HHCCCHHHHHHCC
T ss_conf 0245542899679884----------------3673------16899999999----------8---7422355520113
Q ss_pred CCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 78878726893589879999998
Q gi|254780858|r 246 GHVNYPCTVEESMSITFDELIEK 268 (425)
Q Consensus 246 G~V~~Pg~~evp~Gt~l~eli~~ 268 (425)
|..+.----.||||--+-++++.
T Consensus 103 G~~~E~i~AQVpmGr~~~kiLe~ 125 (172)
T COG4032 103 GVLKEGIEAQVPMGRALPKILEG 125 (172)
T ss_pred CHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 41303773136421215899965
No 111
>pfam03786 UxuA D-mannonate dehydratase (UxuA). UxuA (this family) and UxuB are required for hexuronate degradation.
Probab=21.79 E-value=53 Score=13.23 Aligned_cols=95 Identities=21% Similarity=0.390 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCC-CCCEEEEECCCCCHHHHHHHH
Q ss_conf 8899862278303785000289999999999605688863389877430476426788-787268935898799999986
Q gi|254780858|r 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV-NYPCTVEESMSITFDELIEKH 269 (425)
Q Consensus 191 ~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~V-~~Pg~~evp~Gt~l~eli~~~ 269 (425)
--||+| +||-|-+|+|.|-+..+-.++. .+.+ |-. | -+|.. .+| +--+-++|..+
T Consensus 207 DDPP~~----l~GlPRI~s~~ed~~~ll~~v~----------Sp~N-Git-f-C~GSlg~~~-------~nDl~~~ir~f 262 (350)
T pfam03786 207 DDPPWP----IFGLPRIVTNIEDYQRLLELVD----------SPYN-GIT-L-CTGSYGARP-------DNDLPEMIREF 262 (350)
T ss_pred CCCCCC----CCCCCEECCCHHHHHHHHHHCC----------CCCC-CEE-E-ECCCCCCCC-------CCCHHHHHHHH
T ss_conf 999855----5787633189999999998479----------9412-678-7-114566788-------89999999998
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 1556787110048985245656532100245--63342201103873466517994286528999999999
Q gi|254780858|r 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG--AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338 (425)
Q Consensus 270 ~GG~~~~~~~~kav~~GG~~~g~l~~~~ld~--~~ld~~~l~~~Gs~LGsg~iiV~de~~~iv~~~~~~~~ 338 (425)
++ ++-.|.. +.... .+-+| .+. . ..+-++||+++++.+.+
T Consensus 263 ~~-------RI~FvH~----------RnV~~~~~~~~F---~E~------~---hl~G~~DM~~v~kal~~ 304 (350)
T pfam03786 263 AD-------RIYFAHL----------RNIKREEGPKDF---YET------A---HLEGSTDMASVMKAYHE 304 (350)
T ss_pred HC-------CCCEEEE----------ECCCCCCCCCCE---EEC------C---CCCCCCHHHHHHHHHHH
T ss_conf 43-------1024543----------011135899984---753------6---66788309999999998
No 112
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=21.51 E-value=26 Score=15.35 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 2302899999999998289
Q gi|254780858|r 351 CREGTGWMMRVMERLVKGI 369 (425)
Q Consensus 351 CR~Gt~~l~~il~~i~~G~ 369 (425)
.+....++.+.++++.+|+
T Consensus 305 ~~~~l~~~~~A~~~l~~~~ 323 (332)
T PRK13771 305 GHVSLSDIDKALEMLKDKS 323 (332)
T ss_pred EEEEHHHHHHHHHHHHCCC
T ss_conf 7982899999999997799
No 113
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=21.06 E-value=55 Score=13.13 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=8.0
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 9988523028999999999
Q gi|254780858|r 346 GQCTPCREGTGWMMRVMER 364 (425)
Q Consensus 346 GkCtPCR~Gt~~l~~il~~ 364 (425)
-+|.|||.=.+.+.++.++
T Consensus 23 ~wCgpCk~l~P~l~~la~e 41 (97)
T cd02949 23 PTCGPCRTLKPILNKVIDE 41 (97)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9985656426999999998
No 114
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=20.58 E-value=29 Score=15.05 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52899999999999876279988523028999999999982899989999999999862236667765024799999986
Q gi|254780858|r 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406 (425)
Q Consensus 327 ~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~ 406 (425)
.|.==+.++|.+-|-+. +.+..|+|--+.. +...|.-+.+|.+.++.+ ....-+.
T Consensus 346 ~C~Cy~Ck~YSRAYL~H-----------L~r~~EllG~rL~---s~HNl~f~~rL~~~iR~A-----------I~~d~f~ 400 (415)
T TIGR00430 346 ECDCYTCKNYSRAYLRH-----------LIRAKELLGARLA---SLHNLHFLLRLMEKIRQA-----------ILEDRFL 400 (415)
T ss_pred CCCCCCCCCHHHHHHHH-----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHCCCCC
T ss_conf 77763144112789878-----------8863179999997---788999999999999887-----------5368733
Q ss_pred HCHHHHHHHHHH
Q ss_conf 388999999865
Q gi|254780858|r 407 NFRPLIEERIDQ 418 (425)
Q Consensus 407 ~F~dEfe~hI~~ 418 (425)
.|+.||-+....
T Consensus 401 ~F~~~f~~~~g~ 412 (415)
T TIGR00430 401 SFREEFLEKYGE 412 (415)
T ss_pred CHHHHHHHHCCC
T ss_conf 058999997257
No 115
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=20.54 E-value=56 Score=13.06 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=33.8
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHHH
Q ss_conf 9998576778486004899986258999999999997183638998155517---89999999999998
Q gi|254780858|r 79 YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI---RERESLQAAVDECY 144 (425)
Q Consensus 79 yvv~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~---~~~~~l~~ai~ea~ 144 (425)
|+++.+...| -.|=.+|-|-+|.++|++-=+..|..=..|- .+++++++=+++..
T Consensus 249 ~Lai~ghsa~-----------it~G~mIAgSIl~GRaLaPid~aI~~Wk~~~~Ar~ay~Rl~~ll~~~p 306 (556)
T TIGR01842 249 YLAIDGHSAE-----------ITPGMMIAGSILVGRALAPIDGAIGGWKQFSAARQAYKRLNELLAEYP 306 (556)
T ss_pred EEEECCCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0323035441-----------573137888899977841077888888889999999999999998578
No 116
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=20.52 E-value=52 Score=13.31 Aligned_cols=16 Identities=19% Similarity=0.163 Sum_probs=8.9
Q ss_pred CCCEEEEEECCCCCCC
Q ss_conf 8861999857677848
Q gi|254780858|r 75 DRPHYLVVNADESEPG 90 (425)
Q Consensus 75 ~~~~yvv~N~~E~EPg 90 (425)
++|-.|---|+=|+|.
T Consensus 20 gKPvlVdFyA~WC~~C 35 (142)
T cd02950 20 GKPTLVEFYADWCTVC 35 (142)
T ss_pred CCCEEEEEECCCCHHH
T ss_conf 9978999989989778
No 117
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.42 E-value=29 Score=15.05 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=8.2
Q ss_pred EEEEEE--CCCCCCC
Q ss_conf 199985--7677848
Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425)
Q Consensus 78 ~yvv~N--~~E~EPg 90 (425)
|+||+| |.=|.|.
T Consensus 26 k~vvl~FWAtWC~pC 40 (127)
T cd03010 26 KPYLLNVWASWCAPC 40 (127)
T ss_pred CEEEEEEECCCCHHH
T ss_conf 989999998958668
No 118
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=20.02 E-value=55 Score=13.12 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=4.3
Q ss_pred CCCCCCCCHHH
Q ss_conf 37850002899
Q gi|254780858|r 203 GCPTTVNNVES 213 (425)
Q Consensus 203 g~PT~V~NVeT 213 (425)
|||+++|=..|
T Consensus 21 gk~vll~Fwat 31 (114)
T cd02967 21 GRPTLLFFLSP 31 (114)
T ss_pred CCEEEEEEECC
T ss_conf 98499999789
Done!