HHsearch alignment for GI: 254780858 and conserved domain: pfam11973
>pfam11973 NQRA_SLBB NQRA C-terminal domain. This family consists of the C-terminal domain of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=91.66 E-value=0.36 Score=27.90 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=35.4
Q ss_pred EEECCCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 7642678-878726893589879999998615567871100489852456565
Q gi|254780858|r 241 LFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292 (425)
Q Consensus 241 l~tvsG~-V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~ 292 (425)
T Consensus 1 vIal~G~~v~~P~y~~t~~Ga~i~~l~~---g~~~~~--~~R-iISG~vLtG~ 47 (51)
T pfam11973 1 VVALAGPAVKKPRLVRTRLGASLSELLA---GELKEG--NVR-VISGSVLTGR 47 (51)
T ss_pred CEEECCCCCCCCEEEEEECCCCHHHHHC---CCCCCC--CCE-EEECCCCCCC
T ss_conf 9886288889961899845977899866---676789--837-9978878675