HHsearch alignment of GI: 254780858 and MMDB domain: 3i9v_1_238-334
>3i9v_1 (1:238-334) NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1*
Probab=99.92 E-value=2e-25 Score=191.08 Aligned_cols=95 Identities=41% Similarity=0.663 Sum_probs=86.9
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCC
Q ss_conf 863389877430476426788787268935898799999986155678711004898524565653210--024563342
Q gi|254780858|r 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDY 305 (425)
Q Consensus 228 y~~~G~~~~~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~ 305 (425)
|+++|+++++|||++||||+|++||+||+|+|||++|||+++||+.. +++||+|+||||+++++.. ++| .||||
T Consensus 1 f~~~g~~~~~gtkl~tvsG~V~~Pg~~Evp~Gt~l~elie~~gG~~~---~~~kav~~GG~~~g~~~~~~~~~d-~pld~ 76 (97)
T 3i9v_1 1 FAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSY 76 (97)
T ss_dssp HHTBBCSSSBSEEEEEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCST
T ss_pred HHCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCC---CCCEEEEEECCCCCCCCCHHHHCC-CCCCH
T ss_conf 41657667988468852000367843896899738999987505556---673389962255542441344203-65316
Q ss_pred CCHHHCCCCCCCCEEEEECCC
Q ss_conf 201103873466517994286
Q gi|254780858|r 306 DGLKEMGSGLGTAAVIVMDRS 326 (425)
Q Consensus 306 ~~l~~~Gs~LGsg~iiV~de~ 326 (425)
|+++++|+++||++|+||||.
T Consensus 77 ~~l~~~g~~~Gtg~iivl~~~ 97 (97)
T 3i9v_1 77 EHLQAKGSMLGTGGVILIPER 97 (97)
T ss_dssp TTTGGGSSCCSSSEEEEEETT
T ss_pred HHHHHCCCCCCCCCCCCCCCC
T ss_conf 789862972246654467853