Query gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs 156 out of 1693
Neff 5.4
Searched_HMMs 33803
Date Wed Jun 1 18:29:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i9v_1 NADH-quinone oxidoredu 100.0 0 0 451.5 24.6 223 4-227 13-237 (237)
2 >3i9v_1 NADH-quinone oxidoredu 100.0 1.4E-30 4.2E-35 225.8 9.5 98 327-425 1-99 (104)
3 >3i9v_1 NADH-quinone oxidoredu 99.9 2E-25 5.8E-30 191.1 9.4 95 228-326 1-97 (97)
4 >2j58_A WZA, outer membrane li 95.2 0.036 1.1E-06 34.2 5.0 45 240-285 8-53 (89)
5 >1f8f_A Benzyl alcohol dehydro 48.8 3.3 9.7E-05 21.0 -0.6 23 319-341 155-182 (220)
6 >2nut_A Protein transport prot 45.8 19 0.00055 15.9 3.8 60 13-100 48-112 (126)
7 >1m2o_A SEC23, protein transpo 43.8 20 0.00059 15.7 2.8 59 14-100 38-101 (108)
8 >1k19_A Chemosensory protein C 29.9 31 0.00093 14.4 2.0 55 321-379 29-85 (112)
9 >1uul_A Tryparedoxin peroxidas 28.5 34 0.001 14.1 2.0 29 238-266 129-157 (202)
10 >3k1t_A Glutamate--cysteine li 28.4 35 0.001 14.0 3.2 41 208-262 19-59 (110)
11 >1h2b_A Alcohol dehydrogenase; 27.7 12 0.00035 17.2 -0.5 25 346-370 182-208 (216)
12 >1vj0_A Alcohol dehydrogenase, 27.4 11 0.00033 17.4 -0.6 26 169-201 12-37 (192)
13 >2cf5_A Atccad5, CAD, cinnamyl 27.3 8 0.00024 18.4 -1.4 15 343-357 2-16 (38)
14 >1yqd_A Sinapyl alcohol dehydr 26.4 12 0.00037 17.0 -0.6 15 343-357 2-16 (38)
15 >1dvp_A HRS, hepatocyte growth 26.0 38 0.0011 13.8 3.2 67 358-424 6-89 (99)
16 >1we0_A Alkyl hydroperoxide re 23.8 42 0.0012 13.5 2.6 13 78-90 32-46 (187)
17 >2a9d_A Sulfite oxidase; molyb 22.7 44 0.0013 13.3 3.2 27 253-281 63-90 (182)
18 >1uuf_A YAHK, zinc-type alcoho 21.8 17 0.00051 16.1 -0.6 50 321-373 161-216 (226)
No 1
>>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* (1:1-237)
Probab=100.00 E-value=0 Score=451.53 Aligned_cols=223 Identities=52% Similarity=0.899 Sum_probs=215.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 (425)
Q Consensus 4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~ 82 (425)
.+++++.+....++.+|++|.+.++|+.+.+.+. +++++++++|++||||||||||||||+||+++++.. ..++||||
T Consensus 13 i~~~~~~~~~~~~~i~I~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~aGlvG~GGAgFPt~~K~~~~~~~~-~~~~~liv 91 (237)
T 3i9v_1 13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC 91 (237)
T ss_dssp CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC-CCCEEEEE
T ss_conf 64698851799998889999977999999999870899999999998098747666162446677453567-99628997
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf 5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 (425)
Q Consensus 83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i 161 (425)
||+||||++|+||+||+++||+||||+.|+++++||++++|||+++|++++++|++||+|++.++++|.| .+++++++|
T Consensus 92 N~~EcEP~l~~D~~ll~~~p~~ii~G~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~e~~~~~~~g~~~~~~~~~~~i 171 (237)
T 3i9v_1 92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL 171 (237)
T ss_dssp ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf 26779732047899999869999999999998745554899964430667999999999998748866544588877238
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHH
Q ss_conf 997457510011078899863089998688899862278303785000289999999999605688
Q gi|254780858|r 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227 (425)
Q Consensus 162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~ 227 (425)
+|+.++++||||||++||++++|++..||.|||+|+++|+|+.||+|||+||+++++.++++|++|
T Consensus 172 ~V~~~~~~Yp~GeE~~Li~~l~G~~~~p~~~~p~~~~~gv~n~~T~v~n~etl~~~~~~i~~G~~w 237 (237)
T 3i9v_1 172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADW 237 (237)
T ss_dssp EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCHH
T ss_conf 998568632015125789987187366688778873314346764022199999888998519436
No 2
>>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* (1:335-438)
Probab=99.97 E-value=1.4e-30 Score=225.78 Aligned_cols=98 Identities=36% Similarity=0.830 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52899999999999876279988523028-99999999998289998999999999986223666776502479999998
Q gi|254780858|r 327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405 (425)
Q Consensus 327 ~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt-~~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l 405 (425)
+||+++++++++||++||||||||||+|| +|+.++|++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+|
T Consensus 1 v~~v~~~~~~~~F~~~ESCGqCtPCR~Gt~~~~~~il~~i~~G~~~~~dl~~l~~i~~~i~~~s~C~lg~~a~~~v~s~l 80 (104)
T 3i9v_1 1 VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSL 80 (104)
T ss_dssp SCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 04999999876306777689997838887999999999999679998999999999976158882879667899999999
Q ss_pred HHCHHHHHHHHHHHCCCCCC
Q ss_conf 63889999998651899999
Q gi|254780858|r 406 KNFRPLIEERIDQYHRCNFQ 425 (425)
Q Consensus 406 ~~F~dEfe~hI~~~~rCp~~ 425 (425)
++|||||++||++ ++||..
T Consensus 81 ~~F~~efe~~i~~-~~~~~~ 99 (104)
T 3i9v_1 81 RHFKDQYLALARE-KRPVPR 99 (104)
T ss_dssp HHHHHHHHHHHHT-TCCCCC
T ss_pred HHHHHHHHHHHHC-CCCCCC
T ss_conf 9869999999865-899997
No 3
>>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* (1:238-334)
Probab=99.92 E-value=2e-25 Score=191.08 Aligned_cols=95 Identities=41% Similarity=0.663 Sum_probs=86.9
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCC
Q ss_conf 863389877430476426788787268935898799999986155678711004898524565653210--024563342
Q gi|254780858|r 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDY 305 (425)
Q Consensus 228 y~~~G~~~~~Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~ 305 (425)
|+++|+++++|||++||||+|++||+||+|+|||++|||+++||+.. +++||+|+||||+++++.. ++| .||||
T Consensus 1 f~~~g~~~~~gtkl~tvsG~V~~Pg~~Evp~Gt~l~elie~~gG~~~---~~~kav~~GG~~~g~~~~~~~~~d-~pld~ 76 (97)
T 3i9v_1 1 FAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSY 76 (97)
T ss_dssp HHTBBCSSSBSEEEEEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCST
T ss_pred HHCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCC---CCCEEEEEECCCCCCCCCHHHHCC-CCCCH
T ss_conf 41657667988468852000367843896899738999987505556---673389962255542441344203-65316
Q ss_pred CCHHHCCCCCCCCEEEEECCC
Q ss_conf 201103873466517994286
Q gi|254780858|r 306 DGLKEMGSGLGTAAVIVMDRS 326 (425)
Q Consensus 306 ~~l~~~Gs~LGsg~iiV~de~ 326 (425)
|+++++|+++||++|+||||.
T Consensus 77 ~~l~~~g~~~Gtg~iivl~~~ 97 (97)
T 3i9v_1 77 EHLQAKGSMLGTGGVILIPER 97 (97)
T ss_dssp TTTGGGSSCCSSSEEEEEETT
T ss_pred HHHHHCCCCCCCCCCCCCCCC
T ss_conf 789862972246654467853
No 4
>>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* (A:47-53,A:151-232)
Probab=95.22 E-value=0.036 Score=34.20 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=35.3
Q ss_pred EEEECCCCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 4764267887872689358-987999999861556787110048985
Q gi|254780858|r 240 KLFSISGHVNYPCTVEESM-SITFDELIEKHCGGIRGGWDNLLAVIP 285 (425)
Q Consensus 240 kl~tvsG~V~~Pg~~evp~-Gt~l~eli~~~~GG~~~~~~~~kav~~ 285 (425)
+-++|.|.|++||.|.++- +++|.|.|. .|||+......-+..+.
T Consensus 8 ~~V~V~GeV~~PG~~~l~~~~~tl~~aIa-~AGG~t~~a~~~~V~i~ 53 (89)
T 2j58_A 8 QKVYVTGEVANSGKQAITNIPLTVXDAIN-AAGGLAADADWRNVVLT 53 (89)
T ss_dssp CEEEEEESBSSCEEEECCSSCCBHHHHHH-HTTSBCTTBCTTCEEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCHHHHHH-HCCCCCCCCCCCEEEEC
T ss_conf 11001333222431002578887999999-71897422220014531
No 5
>>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} (A:1-166,A:318-371)
Probab=48.85 E-value=3.3 Score=20.96 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=11.2
Q ss_pred EEEEECCCCC-----HHHHHHHHHHHHH
Q ss_conf 1799428652-----8999999999998
Q gi|254780858|r 319 AVIVMDRSTD-----IIKAIWRLSVFYK 341 (425)
Q Consensus 319 ~iiV~de~~~-----iv~~~~~~~~F~a 341 (425)
.++.++++.+ +-..+=.++++|+
T Consensus 155 ~vvkip~~lp~e~~~p~~~ip~l~~~~~ 182 (220)
T 1f8f_A 155 NTVKVTKDVPIESGSPKKFIPELVRLYQ 182 (220)
T ss_dssp GEEEECTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HEEECCCCCCHHCCCHHHHHHHHHHHHH
T ss_conf 8277788999898757999999999998
No 6
>>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A (A:614-739)
Probab=45.81 E-value=19 Score=15.86 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHCC-----CHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 787677989999779-----989999998269899999999839776875711245568742356568861999857677
Q gi|254780858|r 13 YGLQGKSLSDSMSRG-----HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87 (425)
Q Consensus 13 ~~~~~~~l~~y~~~g-----gy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~ 87 (425)
....+.+++.|++.| +|+.++..|+...+++-+.+++ +- ..|+|++|+..-+
T Consensus 48 ~I~~G~~ia~wrk~~y~~~~ey~~~k~lL~ap~~da~~ll~~---------------------Rf--P~Pr~i~~~~g~S 104 (126)
T 2nut_A 48 LIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHS---------------------RF--PMPRYIDTEHGGS 104 (126)
T ss_dssp EEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHH---------------------SS--SCCEEEEEETTCS
T ss_pred EEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------------CC--CCCEEEEECCCCC
T ss_conf 999787357787534357823677999998789999999972---------------------78--9862899478983
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 8486004899986
Q gi|254780858|r 88 EPGTCKDRDIMRH 100 (425)
Q Consensus 88 EPgt~kDr~Ll~~ 100 (425)
. .|+|+..
T Consensus 105 Q-----ARfLlsr 112 (126)
T 2nut_A 105 Q-----ARFLLSK 112 (126)
T ss_dssp T-----THHHHHH
T ss_pred H-----HHHHHHH
T ss_conf 7-----8877765
No 7
>>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} (A:627-734)
Probab=43.84 E-value=20 Score=15.69 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHH-----CCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 876779899997-----799899999982698999999998397768757112455687423565688619998576778
Q gi|254780858|r 14 GLQGKSLSDSMS-----RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88 (425)
Q Consensus 14 ~~~~~~l~~y~~-----~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~E 88 (425)
...+.+++.|++ .-+|+.++..|+-..+++-+.+++ +- ..|+|++|+.+-+.
T Consensus 38 I~~G~~ia~W~k~~y~~~~~y~~~k~lL~ap~~da~~il~~---------------------Rf--P~Pr~i~~~~~~SQ 94 (108)
T 1m2o_A 38 IYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVD---------------------RF--PLPRFIDTEAGGSQ 94 (108)
T ss_dssp EEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHHHHHT---------------------CS--SCCEEEEEETTCGG
T ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------CC--CCCEEEEECCCCCH
T ss_conf 99787445677526468933888999998778899999874---------------------37--87628996789868
Q ss_pred CCCCCCHHHHHH
Q ss_conf 486004899986
Q gi|254780858|r 89 PGTCKDRDIMRH 100 (425)
Q Consensus 89 Pgt~kDr~Ll~~ 100 (425)
.|+||..
T Consensus 95 -----ARfL~sr 101 (108)
T 1m2o_A 95 -----ARFLLSK 101 (108)
T ss_dssp -----GHHHHTT
T ss_pred -----HHHHHHH
T ss_conf -----9899987
No 8
>>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} (A:)
Probab=29.92 E-value=31 Score=14.35 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=29.8
Q ss_pred EEECCCCCHH--HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9942865289--9999999999876279988523028999999999982899989999999
Q gi|254780858|r 321 IVMDRSTDII--KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379 (425)
Q Consensus 321 iV~de~~~iv--~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl~~L~ 379 (425)
.++|++.|-. ..++..+--.-..+|++|||=.. ..+.++++-+... .+++++.|.
T Consensus 29 Clld~gpCt~egk~lK~~lPeal~t~C~kCT~kQK--~~~~kvi~~l~~~--~P~~w~~L~ 85 (112)
T 1k19_A 29 CVMERGKCSPEGKELKEHLQDAIENGCKKCTENQE--KGAYRVIEHLIKN--EIEIWRELT 85 (112)
T ss_dssp HHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSHHH--HHHHHHHHHHHHH--HSCHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHHHHHHHHC--CHHHHHHHH
T ss_conf 97068999878999999979998703568999999--9999999999990--929999999
No 9
>>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} (A:)
Probab=28.54 E-value=34 Score=14.12 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=14.6
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 30476426788787268935898799999
Q gi|254780858|r 238 GTKLFSISGHVNYPCTVEESMSITFDELI 266 (425)
Q Consensus 238 Gtkl~tvsG~V~~Pg~~evp~Gt~l~eli 266 (425)
.+-++--.|.|..--..+...+....++.
T Consensus 129 ~~~vId~~G~I~~~~~~~~~~~~~~~~~~ 157 (202)
T 1uul_A 129 GLFIIDPKQNLRQITVNDLPVGRDVDEAL 157 (202)
T ss_dssp EEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred EEEEECCCCEEEEEEEECCCCCCCHHHHH
T ss_conf 99985688669999995898571899999
No 10
>>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} (A:94-203)
Probab=28.43 E-value=35 Score=14.04 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCH
Q ss_conf 0028999999999960568886338987743047642678878726893589879
Q gi|254780858|r 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262 (425)
Q Consensus 208 V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~V~~Pg~~evp~Gt~l 262 (425)
+.||.++..+ ++..|..- |+=|++-+++.|-.++.|-|.++
T Consensus 19 l~nv~~L~~I----------l~~AG~~V----riGsl~pei~~pt~~~l~~G~~l 59 (110)
T 3k1t_A 19 LRNVHALTHI----------LRQAGLEV----RIGSIAPEITAPTFLETHDGHSI 59 (110)
T ss_dssp HHHHHHHHHH----------HHHTTCEE----EEEECCTTCCSCEEEECSSSCEE
T ss_pred HHHHHHHHHH----------HHHCCCEE----EEECCCCCCCCCEEEECCCCCEE
T ss_conf 9999999999----------99859859----98157866678605756999866
No 11
>>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} (A:1-166,A:310-359)
Probab=27.71 E-value=12 Score=17.23 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=13.7
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCC
Q ss_conf 998852--3028999999999982899
Q gi|254780858|r 346 GQCTPC--REGTGWMMRVMERLVKGIA 370 (425)
Q Consensus 346 GkCtPC--R~Gt~~l~~il~~i~~G~a 370 (425)
||=.|= +.....+.+.++++.+|+-
T Consensus 182 g~v~~~~~~~~l~~~~~a~~~l~~g~~ 208 (216)
T 1h2b_A 182 GKVRVEVDIHKLDEINDVLERLEKGEV 208 (216)
T ss_dssp TSCCCCEEEEEGGGHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 999450899849999999999987999
No 12
>>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} (A:41-178,A:327-380)
Probab=27.38 E-value=11 Score=17.35 Aligned_cols=26 Identities=35% Similarity=0.889 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 100110788998630899986888998622783
Q gi|254780858|r 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGL 201 (425)
Q Consensus 169 ~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl 201 (425)
+=|||-.-.++ .|.. |.. ++|.-.|.
T Consensus 12 ~gICgSDl~~~---~G~~--~~~--~~P~IlGH 37 (192)
T 1vj0_A 12 AGVCGSDVHMF---RGED--PRV--PLPIILGH 37 (192)
T ss_dssp EEECHHHHHHH---TTCC--TTC--CSSBCCCC
T ss_pred EEECHHHHHHH---CCCC--CCC--CCCEECCE
T ss_conf 97999999997---4999--999--99982433
No 13
>>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* (A:97-134)
Probab=27.34 E-value=8 Score=18.36 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=11.3
Q ss_pred HHCCCCCCCCCHHHH
Q ss_conf 627998852302899
Q gi|254780858|r 343 ESCGQCTPCREGTGW 357 (425)
Q Consensus 343 ESCGkCtPCR~Gt~~ 357 (425)
-||+.|-+|+.|..+
T Consensus 2 dSC~~C~~C~~~~Eq 16 (38)
T 2cf5_A 2 GCCGGCSPCERDLEQ 16 (38)
T ss_dssp ECCSSSHHHHTTCGG
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 666775754334444
No 14
>>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant defense, biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* (A:104-141)
Probab=26.43 E-value=12 Score=17.05 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=11.1
Q ss_pred HHCCCCCCCCCHHHH
Q ss_conf 627998852302899
Q gi|254780858|r 343 ESCGQCTPCREGTGW 357 (425)
Q Consensus 343 ESCGkCtPCR~Gt~~ 357 (425)
-||+.|-+|+.|..+
T Consensus 2 dSC~~C~~C~~~~E~ 16 (38)
T 1yqd_A 2 GACHSCESCANDLEN 16 (38)
T ss_dssp ECCSSSHHHHTTCGG
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 678885100343112
No 15
>>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix; HET: CIT; 2.00A {Drosophila melanogaster} (A:1-83,A:193-208)
Probab=26.04 E-value=38 Score=13.76 Aligned_cols=67 Identities=9% Similarity=0.208 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC-----------------CCHHHHHHHHHHHHHCHHHHHHHHHHHC
Q ss_conf 99999999828999899999999998622366677-----------------6502479999998638899999986518
Q gi|254780858|r 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA-----------------LGDAAAWPIQGLIKNFRPLIEERIDQYH 420 (425)
Q Consensus 358 l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~-----------------lG~~a~~pv~s~l~~F~dEfe~hI~~~~ 420 (425)
+.+++++..+..-...|++.+.++++.+.....-+ --.-|-..+.+.+++..+.|...|...+
T Consensus 6 ~~~lIekATs~~l~~~Dw~~il~iCD~In~~~~~~k~a~raL~kRi~~~n~~v~l~AL~LLE~cvkNCG~~fh~eIas~~ 85 (99)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTAK 85 (99)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSCE
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 99999997686788868999999999995798569999999999976998899999999999999862799999997789
Q ss_pred CCCC
Q ss_conf 9999
Q gi|254780858|r 421 RCNF 424 (425)
Q Consensus 421 rCp~ 424 (425)
.||.
T Consensus 86 ~~~~ 89 (99)
T 1dvp_A 86 QCPL 89 (99)
T ss_dssp EEEE
T ss_pred CCCC
T ss_conf 8708
No 16
>>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} (A:)
Probab=23.80 E-value=42 Score=13.49 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=7.1
Q ss_pred EEEEEEC--CCCCCC
Q ss_conf 1999857--677848
Q gi|254780858|r 78 HYLVVNA--DESEPG 90 (425)
Q Consensus 78 ~yvv~N~--~E~EPg 90 (425)
|+||+|- .-|-|.
T Consensus 32 K~vvl~F~~t~C~p~ 46 (187)
T 1we0_A 32 KWSIVVFYPADFSFV 46 (187)
T ss_dssp SEEEEEECSCTTCSS
T ss_pred CEEEEEEECCCCCCC
T ss_conf 969999977767864
No 17
>>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} (A:53-234)
Probab=22.70 E-value=44 Score=13.35 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=15.2
Q ss_pred EEEECC-CCCHHHHHHHHHCCCCCCCCCEE
Q ss_conf 689358-98799999986155678711004
Q gi|254780858|r 253 TVEESM-SITFDELIEKHCGGIRGGWDNLL 281 (425)
Q Consensus 253 ~~evp~-Gt~l~eli~~~~GG~~~~~~~~k 281 (425)
+.-+.+ |++|++||+. +|. .++...+.
T Consensus 63 ~~~~~w~GV~L~~iL~~-ag~-~~~a~~v~ 90 (182)
T 2a9d_A 63 ISTARWGGARLRDVLLH-AGF-PEELQGEW 90 (182)
T ss_dssp EEEEEEEEEEHHHHHHH-TTC-CSCCSSCC
T ss_pred HCCCEECCCCHHHHHHH-HCC-CCCCCCEE
T ss_conf 00421037609999987-479-82005039
No 18
>>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} (A:1-171,A:315-369)
Probab=21.79 E-value=17 Score=16.09 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=29.6
Q ss_pred EEECCCCCHH----HHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9942865289----999999999987627998852--3028999999999982899989
Q gi|254780858|r 321 IVMDRSTDII----KAIWRLSVFYKHESCGQCTPC--REGTGWMMRVMERLVKGIAQKR 373 (425)
Q Consensus 321 iV~de~~~iv----~~~~~~~~F~a~ESCGkCtPC--R~Gt~~l~~il~~i~~G~a~~~ 373 (425)
+-+++..+.+ ..++.+++|++... -.|= -.-..++.+.++|+.+|+.+-+
T Consensus 161 v~IP~~l~~~~g~~~~~~eml~f~~~~~---i~~~ve~~~~~~~~~a~~~~~~~~~ryR 216 (226)
T 1uuf_A 161 LRIRHPQEQLAGGIPETQEMLDFCAEHG---IVADIEMIRADQINEAYERMLRGDVKYR 216 (226)
T ss_dssp EECCSCGGGHHCCHHHHHHHHHHHHHHT---CCCCEEEECGGGHHHHHHHHHTTCSSSE
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHCC---CCCCEEEEEHHHHHHHHHHHHCCCCCEE
T ss_conf 3323333045579999999999998098---9877699829999999999986998269
Done!