Query gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Match_columns 425 No_of_seqs 156 out of 1693 Neff 5.4 Searched_HMMs 23785 Date Tue May 31 21:49:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3i9v_1 NADH-quinone oxidoreduc 100.0 0 0 924.4 43.9 414 4-423 13-431 (438) 2 2j58_A WZA, outer membrane lip 91.2 0.28 1.2E-05 27.2 4.8 113 240-365 235-354 (359) 3 2pg3_A Queuosine biosynthesis 45.0 2.8 0.00012 20.4 -0.6 15 344-358 197-211 (232) 4 1o8x_A Tryparedoxin, TRYX, TXN 41.5 8.3 0.00035 17.2 1.3 12 78-89 29-42 (146) 5 2p5q_A Glutathione peroxidase 37.0 15 0.00063 15.5 2.1 14 201-214 30-43 (170) 6 1i5g_A Tryparedoxin II; electr 36.8 11 0.00045 16.4 1.3 13 78-90 29-43 (144) 7 1z6n_A Hypothetical protein PA 36.4 9.1 0.00038 16.9 0.9 21 15-35 9-29 (167) 8 3bl5_A Queuosine biosynthesis 34.4 9.2 0.00039 16.9 0.7 18 344-361 194-211 (219) 9 3bqp_A Proactivator polypeptid 33.1 21 0.00086 14.6 3.1 61 346-418 3-64 (80) 10 1nd9_A Translation initiation 32.6 21 0.00088 14.5 2.6 24 30-53 6-29 (49) 11 1dgj_A Aldehyde oxidoreductase 32.3 21 0.00089 14.5 7.5 19 18-36 124-149 (907) 12 2cvb_A Probable thiol-disulfid 27.6 15 0.00064 15.4 0.9 12 78-89 34-47 (188) 13 2vup_A Glutathione peroxidase- 27.1 26 0.0011 13.9 2.3 13 201-213 46-58 (190) 14 3o2q_B RNA polymerase II subun 25.8 27 0.0011 13.7 2.0 53 209-269 35-88 (214) 15 1tg7_A Beta-galactosidase; TIM 25.5 28 0.0012 13.7 2.2 32 117-148 149-189 (971) 16 3hcz_A Possible thiol-disulfid 25.0 28 0.0012 13.6 2.1 10 238-247 64-73 (148) 17 1o73_A Tryparedoxin; electron 24.9 23 0.00096 14.2 1.3 12 78-89 29-42 (144) 18 1k19_A Chemosensory protein CS 22.5 31 0.0013 13.3 2.0 31 321-351 29-61 (112) 19 2obi_A PHGPX, GPX-4, phospholi 21.7 32 0.0014 13.2 2.1 12 202-213 46-57 (183) No 1 >3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1* Probab=100.00 E-value=0 Score=924.42 Aligned_cols=414 Identities=45% Similarity=0.830 Sum_probs=394.2 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE Q ss_conf 0343675517876779899997799899999982-698999999998397768757112455687423565688619998 Q gi|254780858|r 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82 (425) Q Consensus 4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~ 82 (425) .++.+|+|.+..++++|++|+++|||++|+|+++ |+|++++++|++||||||||||||||+||+++++.. .+++|||| T Consensus 13 ~~~~~~~~~~~~~~~~~~~y~~~ggy~~~~~~l~~~~p~~ii~~i~~aGl~GrGGAgFPT~vK~~~~~~~~-~~~~~vii 91 (438) T 3i9v_1 13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC 91 (438) T ss_dssp CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE T ss_pred HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC-CCCCEEEE T ss_conf 42498852799997789999976999999999871899999999998198757767470547777355668-99858999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE Q ss_conf 5767784860048999862589999999999971836389981555178999999999999868997767-678866406 Q gi|254780858|r 83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161 (425) Q Consensus 83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i 161 (425) ||+||||++||||+||+++||+|||||+|+++++||+++|||||+||++++++|++||++++++|+||+| ++++++++| T Consensus 92 Ng~EcEP~~~kD~~Lm~~~p~~vieG~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~~a~~~g~lg~~~~g~~~~~~i 171 (438) T 3i9v_1 92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL 171 (438) T ss_dssp ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE T ss_conf 68678623441399997778999999999999858875899823035999999999999988748656545688887207 Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEE Q ss_conf 99745751001107889986308999868889986227830378500028999999999960568886338987743047 Q gi|254780858|r 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241 (425) Q Consensus 162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl 241 (425) +|++++++|||||||+||+|+||+|+.||.|||||+++|+|++||+||||||+++|+.|+++|.+||+++|++.++|||+ T Consensus 172 ~V~~~~~~Yp~GeE~aLi~al~G~r~~pr~~pP~p~~~Gl~~~pt~v~NVeT~~~v~~ii~~G~~~~~~~gt~~~~Gtkl 251 (438) T 3i9v_1 172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKL 251 (438) T ss_dssp EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEE T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEE T ss_conf 99978984235789999998639757999999975321223787366529999987899984969885348778997179 Q ss_pred EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCCCE Q ss_conf 6426788787268935898799999986155678711004898524565653210--02456334220110387346651 Q gi|254780858|r 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDYDGLKEMGSGLGTAA 319 (425) Q Consensus 242 ~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~~~l~~~Gs~LGsg~ 319 (425) +||||+|++|++||||+|||++|||+.++|+.. .+++++++||+++++++.. .+| +|+||+++.+.|+++||++ T Consensus 252 ~tvsG~V~~P~~~evp~Gt~l~eli~~~gG~~~---~~~~~v~~gG~~~~~~~~~~~~~d-~p~~~~~l~~~g~~lgtg~ 327 (438) T 3i9v_1 252 YQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSYEHLQAKGSMLGTGG 327 (438) T ss_dssp EEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCSTTTTGGGSSCCSSSE T ss_pred EEECCCCCCCEEEEECCCCCHHHHHHHHCCCCC---CCCEEEEECCCCCCCCCCHHHHCC-CCCCHHHHHHCCCEECCCC T ss_conf 971576368806996798728999998658766---674399956877664321012126-7674677986297303676 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 7994286528999999999998762799885230289-999999999828999899999999998622366677650247 Q gi|254780858|r 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398 (425) Q Consensus 320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~ 398 (425) |+|+|+++||++.+.++++||++||||||+|||+|++ ++.++++++..|+++.+|+++|+++++.|..+|+|+|++.++ T Consensus 328 iivl~~~~~~v~~~~~~~~f~a~ESCgqC~pCr~G~p~~l~~il~~i~~g~~~~~dl~~l~~l~~~i~~~s~C~~~~~a~ 407 (438) T 3i9v_1 328 VILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAV 407 (438) T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 32578301489999999875047778999584888699999999999967999899999999997614998267977889 Q ss_pred HHHHHHHHHCHHHHHHHHHHHCCCC Q ss_conf 9999998638899999986518999 Q gi|254780858|r 399 WPIQGLIKNFRPLIEERIDQYHRCN 423 (425) Q Consensus 399 ~pv~s~l~~F~dEfe~hI~~~~rCp 423 (425) +|+.|+|++|++||++|+++ +||- T Consensus 408 ~pl~s~lr~F~~Ef~a~~~~-kr~~ 431 (438) T 3i9v_1 408 WPVKGSLRHFKDQYLALARE-KRPV 431 (438) T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCC T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCC T ss_conf 99999999989999999974-8999 No 2 >2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* Probab=91.20 E-value=0.28 Score=27.18 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=59.9 Q ss_pred EEEECCCCCCCCEEEEEC-CCCCHHHHHHHHHCCCCCCCCCEEEEEE--C---CCCCCCCCCCCCCCCCCCCCCH-HHCC Q ss_conf 476426788787268935-8987999999861556787110048985--2---4565653210024563342201-1038 Q gi|254780858|r 240 KLFSISGHVNYPCTVEES-MSITFDELIEKHCGGIRGGWDNLLAVIP--G---GSSVPCLPAGQMRGAIMDYDGL-KEMG 312 (425) Q Consensus 240 kl~tvsG~V~~Pg~~evp-~Gt~l~eli~~~~GG~~~~~~~~kav~~--G---G~~~g~l~~~~ld~~~ld~~~l-~~~G 312 (425) .-++|.|.|.+|+.|+.. -|+||.|.|. .+||+....-..+.|.+ . ...+.....-+++ . .+..++ .+.. T Consensus 235 ~~v~V~GeV~~pg~~~~~~~~~Tl~dai~-~AGG~~~~~Ad~~~V~viR~~~~~~~~~~~~vy~l~-~-~~~~~~~~a~~ 311 (359) T 2j58_A 235 LKVFVMGEVGKQSTLKMDRSGMTLAEALG-NAEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLN-A-QDASAMVLGTE 311 (359) T ss_dssp CEEEEEESBSSCEEEECBTTBCBHHHHHH-HTTCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEEC-C-SBGGGHHHHTT T ss_pred CEEEEECCCCCCCCCCCCCCCCCHHHHHH-HCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEC-C-CCHHHHCCCCC T ss_conf 31465043036753225778988999998-737987344676507999805898765321799952-7-68334031458 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 73466517994286528999999999998762799885230289999999999 Q gi|254780858|r 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365 (425) Q Consensus 313 s~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i 365 (425) ..|=.+-+|..+++ .+.++.+.+.++ .|=.-|...+...++++ T Consensus 312 f~L~p~DiVyV~~~-p~~~~~r~i~~~---------~~~~~~~~~~~~~~~~i 354 (359) T 2j58_A 312 FQLQPYDIVYVTTA-PLVRWNRVISQL---------VPTISGVHDMTETVRYI 354 (359) T ss_dssp CBCCTTEEEEEEEC-HHHHHHHHHTTT---------HHHHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEECCC-CCHHHHHHHHHH---------CCCHHHHHHHHHHHHHH T ss_conf 84389999998798-621689999875---------05227532058889998 No 3 >2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Probab=44.96 E-value=2.8 Score=20.36 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=10.8 Q ss_pred HCCCCCCCCCHHHHH Q ss_conf 279988523028999 Q gi|254780858|r 344 SCGQCTPCREGTGWM 358 (425) Q Consensus 344 SCGkCtPCR~Gt~~l 358 (425) .||+|.||.+=-.-+ T Consensus 197 ~CG~C~~C~~Rr~af 211 (232) T 2pg3_A 197 GCGQCAACHLRANGL 211 (232) T ss_dssp TTSCSHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 798897799999999 No 4 >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Probab=41.47 E-value=8.3 Score=17.23 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.6 Q ss_pred EEEEEE--CCCCCC Q ss_conf 199985--767784 Q gi|254780858|r 78 HYLVVN--ADESEP 89 (425) Q Consensus 78 ~yvv~N--~~E~EP 89 (425) |+|++| |.=|.| T Consensus 29 K~vll~FwatWC~p 42 (146) T 1o8x_A 29 KLVFFYFSASWCPP 42 (146) T ss_dssp CEEEEEEECTTCHH T ss_pred CEEEEEEECCCCHH T ss_conf 88999998898988 No 5 >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Probab=36.96 E-value=15 Score=15.48 Aligned_cols=14 Identities=29% Similarity=0.180 Sum_probs=8.7 Q ss_pred CCCCCCCCCCHHHH Q ss_conf 30378500028999 Q gi|254780858|r 201 LYGCPTTVNNVESI 214 (425) Q Consensus 201 l~g~PT~V~NVeTl 214 (425) +.||+.+|+|..|. T Consensus 30 ~kGKvvll~fwatw 43 (170) T 2p5q_A 30 FKGKVLLIVNVASK 43 (170) T ss_dssp GTTSEEEEEEECSS T ss_pred CCCCEEEEEEECCC T ss_conf 49988999984687 No 6 >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Probab=36.80 E-value=11 Score=16.43 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=7.4 Q ss_pred EEEEEE--CCCCCCC Q ss_conf 199985--7677848 Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425) Q Consensus 78 ~yvv~N--~~E~EPg 90 (425) |+|++| |.-|.|. T Consensus 29 K~vll~FwAtWC~pC 43 (144) T 1i5g_A 29 KTVFFYFSASWCPPS 43 (144) T ss_dssp SEEEEEEECTTCHHH T ss_pred CEEEEEEECCCCHHH T ss_conf 989999987889879 No 7 >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.1 Probab=36.41 E-value=9.1 Score=16.93 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=13.6 Q ss_pred CCCCCHHHHHHCCCHHHHHHH Q ss_conf 767798999977998999999 Q gi|254780858|r 15 LQGKSLSDSMSRGHWDNVDKI 35 (425) Q Consensus 15 ~~~~~l~~y~~~ggy~~l~~~ 35 (425) ..+.+.+.|.+.+....-.+. T Consensus 9 ~~g~~~~~f~~~~~~~~~~~~ 29 (167) T 1z6n_A 9 DIGEDFAAFVGHGLATEQGAV 29 (167) T ss_dssp HHSBCHHHHHHTSCHHHHHHH T ss_pred HHCCCHHHHHHHCCHHHHHHH T ss_conf 937589999862034655333 No 8 >3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Probab=34.38 E-value=9.2 Score=16.92 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=11.6 Q ss_pred HCCCCCCCCCHHHHHHHH Q ss_conf 279988523028999999 Q gi|254780858|r 344 SCGQCTPCREGTGWMMRV 361 (425) Q Consensus 344 SCGkCtPCR~Gt~~l~~i 361 (425) .||+|.+|.+=-.-..+- T Consensus 194 ~CG~C~~C~~R~~af~e~ 211 (219) T 3bl5_A 194 GCGECPACHLRSKGYEEY 211 (219) T ss_dssp CCSCSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 897786089899999999 No 9 >3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Probab=33.11 E-value=21 Score=14.56 Aligned_cols=61 Identities=18% Similarity=0.355 Sum_probs=38.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 998852302899999999998289998999-9999999862236667765024799999986388999999865 Q gi|254780858|r 346 GQCTPCREGTGWMMRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 (425) Q Consensus 346 GkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl-~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~ 418 (425) +.|.-|+....++.+++ ..+.+.+++ +.+.+++..++. .....-.+++..|-+.+...|.. T Consensus 3 ~~C~~C~~~v~~~~~~l----~~~~t~~~I~~~l~~~C~~lp~--------~~~~~C~~~v~~y~~~ii~~l~~ 64 (80) T 3bqp_A 3 GFCEVCKKLVGYLDRNL----EKNSTKQEILAALEKGCSFLPD--------PYQKQCDQFVAEYEPVLIEILVE 64 (80) T ss_dssp TTHHHHHHHHHHHHHHS----CTTCCHHHHHHHHHHHGGGSCG--------GGHHHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 81278899999999998----6577599999999999875797--------20420099999879999999995 No 10 >1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6 Probab=32.59 E-value=21 Score=14.50 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=20.6 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCC Q ss_conf 999999826989999999983977 Q gi|254780858|r 30 DNVDKILEKGRDWIINEVKASGLR 53 (425) Q Consensus 30 ~~l~~~l~~~~~~ii~~v~~sgl~ 53 (425) +.|.+.+.++++.+++++++|||. T Consensus 6 k~lA~~v~~~vd~LL~Ql~~AGi~ 29 (49) T 1nd9_A 6 KTLAAERQTSVERLVQQFADAGIR 29 (49) T ss_dssp THHHHHHSSSHHHHHHHHHHHTSC T ss_pred HHHHHHHCCCHHHHHHHHHHCCCC T ss_conf 999999894999999999991899 No 11 >1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Probab=32.32 E-value=21 Score=14.47 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=9.7 Q ss_pred CCHHHHHHC-------CCHHHHHHHH Q ss_conf 798999977-------9989999998 Q gi|254780858|r 18 KSLSDSMSR-------GHWDNVDKIL 36 (425) Q Consensus 18 ~~l~~y~~~-------ggy~~l~~~l 36 (425) ..+++.++. .||+.+-+++ T Consensus 124 ~~i~~al~g~~nlCRCTGY~~I~~Av 149 (907) T 1dgj_A 124 EDVRDWFQKHHNICRCTGYKPLVDAV 149 (907) T ss_dssp HHHHHHHHHTTCCCSSSCSHHHHHHH T ss_pred HHHHHHHCCCCCEECCCCCHHHHHHH T ss_conf 99999864996342266888999999 No 12 >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A Probab=27.59 E-value=15 Score=15.42 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=6.4 Q ss_pred EEEEEE--CCCCCC Q ss_conf 199985--767784 Q gi|254780858|r 78 HYLVVN--ADESEP 89 (425) Q Consensus 78 ~yvv~N--~~E~EP 89 (425) |.||+| +..|.| T Consensus 34 k~vvl~FwatwCp~ 47 (188) T 2cvb_A 34 PLLAVVFMCNHCPY 47 (188) T ss_dssp SEEEEEEECSSCHH T ss_pred CEEEEEEECCCCCC T ss_conf 95999998989974 No 13 >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Probab=27.06 E-value=26 Score=13.88 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.3 Q ss_pred CCCCCCCCCCHHH Q ss_conf 3037850002899 Q gi|254780858|r 201 LYGCPTTVNNVES 213 (425) Q Consensus 201 l~g~PT~V~NVeT 213 (425) +-||+.+|+|..| T Consensus 46 ~kGKvvli~f~as 58 (190) T 2vup_A 46 HKGSPLLIYNVAS 58 (190) T ss_dssp GTTSCEEEEEECS T ss_pred CCCCEEEEEEEEC T ss_conf 2998899999715 No 14 >3o2q_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, scaffold, phosphatase, polymerase II CTD, CIS-P hydrolase; HET: SEP; 2.40A {Homo sapiens} PDB: 3o2s_B Probab=25.81 E-value=27 Score=13.73 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=32.7 Q ss_pred CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHH Q ss_conf 028999999999960568886338987743047642678-8787268935898799999986 Q gi|254780858|r 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269 (425) Q Consensus 209 ~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~ 269 (425) |+=.++-+=..+-+.| -.-+++|+.. -+-+-|. ..+|.+|.. |||..++.+++ T Consensus 35 N~NRSMEAH~~L~k~G-~~V~SfGTGs-----~VkLPGps~d~PnvY~F--gT~Y~~iy~dL 88 (214) T 3o2q_B 35 NQNRSMEAHNILSKRG-FSVRSFGTGT-----HVKLPGPAPDKPNVYDF--KTTYDQMYNDL 88 (214) T ss_dssp SSSHHHHHHHHHHHTT-CEEEEEECSS-----SEEECCSSTTCCEEECT--TSCHHHHHHHH T ss_pred CCCCCHHHHHHHHHCC-CCEEEECCCC-----CCCCCCCCCCCCCEECC--CCCHHHHHHHH T ss_conf 7644899999999879-9647305886-----32578999999962079--99899999999 No 15 >1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycoprotein; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Probab=25.52 E-value=28 Score=13.70 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=17.3 Q ss_pred CCCEEEEEECCCCH---------HHHHHHHHHHHHHHHCCC Q ss_conf 83638998155517---------899999999999986899 Q gi|254780858|r 117 GAHCAFIYVRGEFI---------RERESLQAAVDECYASGL 148 (425) Q Consensus 117 gA~~~~I~ir~ey~---------~~~~~l~~ai~ea~~~g~ 148 (425) |-.-+.+=|+.||. ...+-|+..-+.|+++|+ T Consensus 149 GGPIIl~QiENEY~~~~~~~~~~~~~~Ym~~L~~~ar~~Gi 189 (971) T 1tg7_A 149 GGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGI 189 (971) T ss_dssp TSSEEEECCSSCCCCBCTTCCCCSCHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 99289999666778744555688718999999999997199 No 16 >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii atcc 33406} Probab=24.98 E-value=28 Score=13.63 Aligned_cols=10 Identities=10% Similarity=0.384 Sum_probs=5.5 Q ss_pred CEEEEECCCC Q ss_conf 3047642678 Q gi|254780858|r 238 GTKLFSISGH 247 (425) Q Consensus 238 Gtkl~tvsG~ 247 (425) +..+++||-+ T Consensus 64 ~~~~i~is~d 73 (148) T 3hcz_A 64 GIQVYAANIE 73 (148) T ss_dssp TEEEEEEECC T ss_pred CCEEEEEECC T ss_conf 7517998789 No 17 >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Probab=24.87 E-value=23 Score=14.23 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=7.3 Q ss_pred EEEEEE--CCCCCC Q ss_conf 199985--767784 Q gi|254780858|r 78 HYLVVN--ADESEP 89 (425) Q Consensus 78 ~yvv~N--~~E~EP 89 (425) |+|++| |.-|-| T Consensus 29 K~vvl~FwatwC~~ 42 (144) T 1o73_A 29 KTVFLYFSASWCPP 42 (144) T ss_dssp CEEEEEEECTTCHH T ss_pred CEEEEEEECCCCCC T ss_conf 87999999788855 No 18 >1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A Probab=22.50 E-value=31 Score=13.32 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=16.3 Q ss_pred EEECCCCCHHH--HHHHHHHHHHHHHCCCCCCC Q ss_conf 99428652899--99999999987627998852 Q gi|254780858|r 321 IVMDRSTDIIK--AIWRLSVFYKHESCGQCTPC 351 (425) Q Consensus 321 iV~de~~~iv~--~~~~~~~F~a~ESCGkCtPC 351 (425) .++|+..|-.+ .++..+--.-..+|++|||= T Consensus 29 Clld~gpCt~egk~lK~~lPeal~t~C~KCt~k 61 (112) T 1k19_A 29 CVMERGKCSPEGKELKEHLQDAIENGCKKCTEN 61 (112) T ss_dssp HHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSH T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 970689998779999999799986236689999 No 19 >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Probab=21.70 E-value=32 Score=13.21 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=5.3 Q ss_pred CCCCCCCCCHHH Q ss_conf 037850002899 Q gi|254780858|r 202 YGCPTTVNNVES 213 (425) Q Consensus 202 ~g~PT~V~NVeT 213 (425) -||+.+|+|..| T Consensus 46 kGKvvli~F~at 57 (183) T 2obi_A 46 RGFVCIVTNVAS 57 (183) T ss_dssp TTSEEEEEEECS T ss_pred CCCEEEEEEECC T ss_conf 998899999868 Done!