Query         gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs    156 out of 1693
Neff          5.4 
Searched_HMMs 23785
Date          Tue May 31 21:49:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3i9v_1 NADH-quinone oxidoreduc 100.0       0       0  924.4  43.9  414    4-423    13-431 (438)
  2 2j58_A WZA, outer membrane lip  91.2    0.28 1.2E-05   27.2   4.8  113  240-365   235-354 (359)
  3 2pg3_A Queuosine biosynthesis   45.0     2.8 0.00012   20.4  -0.6   15  344-358   197-211 (232)
  4 1o8x_A Tryparedoxin, TRYX, TXN  41.5     8.3 0.00035   17.2   1.3   12   78-89     29-42  (146)
  5 2p5q_A Glutathione peroxidase   37.0      15 0.00063   15.5   2.1   14  201-214    30-43  (170)
  6 1i5g_A Tryparedoxin II; electr  36.8      11 0.00045   16.4   1.3   13   78-90     29-43  (144)
  7 1z6n_A Hypothetical protein PA  36.4     9.1 0.00038   16.9   0.9   21   15-35      9-29  (167)
  8 3bl5_A Queuosine biosynthesis   34.4     9.2 0.00039   16.9   0.7   18  344-361   194-211 (219)
  9 3bqp_A Proactivator polypeptid  33.1      21 0.00086   14.6   3.1   61  346-418     3-64  (80)
 10 1nd9_A Translation initiation   32.6      21 0.00088   14.5   2.6   24   30-53      6-29  (49)
 11 1dgj_A Aldehyde oxidoreductase  32.3      21 0.00089   14.5   7.5   19   18-36    124-149 (907)
 12 2cvb_A Probable thiol-disulfid  27.6      15 0.00064   15.4   0.9   12   78-89     34-47  (188)
 13 2vup_A Glutathione peroxidase-  27.1      26  0.0011   13.9   2.3   13  201-213    46-58  (190)
 14 3o2q_B RNA polymerase II subun  25.8      27  0.0011   13.7   2.0   53  209-269    35-88  (214)
 15 1tg7_A Beta-galactosidase; TIM  25.5      28  0.0012   13.7   2.2   32  117-148   149-189 (971)
 16 3hcz_A Possible thiol-disulfid  25.0      28  0.0012   13.6   2.1   10  238-247    64-73  (148)
 17 1o73_A Tryparedoxin; electron   24.9      23 0.00096   14.2   1.3   12   78-89     29-42  (144)
 18 1k19_A Chemosensory protein CS  22.5      31  0.0013   13.3   2.0   31  321-351    29-61  (112)
 19 2obi_A PHGPX, GPX-4, phospholi  21.7      32  0.0014   13.2   2.1   12  202-213    46-57  (183)

No 1  
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=100.00  E-value=0  Score=924.42  Aligned_cols=414  Identities=45%  Similarity=0.830  Sum_probs=394.2

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             0343675517876779899997799899999982-698999999998397768757112455687423565688619998
Q gi|254780858|r    4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV   82 (425)
Q Consensus         4 ~~~r~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~   82 (425)
                      .++.+|+|.+..++++|++|+++|||++|+|+++ |+|++++++|++||||||||||||||+||+++++.. .+++||||
T Consensus        13 ~~~~~~~~~~~~~~~~~~~y~~~ggy~~~~~~l~~~~p~~ii~~i~~aGl~GrGGAgFPT~vK~~~~~~~~-~~~~~vii   91 (438)
T 3i9v_1           13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLIC   91 (438)
T ss_dssp             CCCCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCSSC-SCCCEEEE
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC-CCCCEEEE
T ss_conf             42498852799997789999976999999999871899999999998198757767470547777355668-99858999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEE
Q ss_conf             5767784860048999862589999999999971836389981555178999999999999868997767-678866406
Q gi|254780858|r   83 NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI  161 (425)
Q Consensus        83 N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~i  161 (425)
                      ||+||||++||||+||+++||+|||||+|+++++||+++|||||+||++++++|++||++++++|+||+| ++++++++|
T Consensus        92 Ng~EcEP~~~kD~~Lm~~~p~~vieG~~i~~~a~gA~~~~I~i~~~~~~ai~~l~~ai~~a~~~g~lg~~~~g~~~~~~i  171 (438)
T 3i9v_1           92 NADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDL  171 (438)
T ss_dssp             ECCCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEE
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             68678623441399997778999999999999858875899823035999999999999988748656545688887207


Q ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEE
Q ss_conf             99745751001107889986308999868889986227830378500028999999999960568886338987743047
Q gi|254780858|r  162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL  241 (425)
Q Consensus       162 ~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl  241 (425)
                      +|++++++|||||||+||+|+||+|+.||.|||||+++|+|++||+||||||+++|+.|+++|.+||+++|++.++|||+
T Consensus       172 ~V~~~~~~Yp~GeE~aLi~al~G~r~~pr~~pP~p~~~Gl~~~pt~v~NVeT~~~v~~ii~~G~~~~~~~gt~~~~Gtkl  251 (438)
T 3i9v_1          172 HVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKL  251 (438)
T ss_dssp             EEEECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEE
T ss_conf             99978984235789999998639757999999975321223787366529999987899984969885348778997179


Q ss_pred             EECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCCCE
Q ss_conf             6426788787268935898799999986155678711004898524565653210--02456334220110387346651
Q gi|254780858|r  242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG--QMRGAIMDYDGLKEMGSGLGTAA  319 (425)
Q Consensus       242 ~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~~--~ld~~~ld~~~l~~~Gs~LGsg~  319 (425)
                      +||||+|++|++||||+|||++|||+.++|+..   .+++++++||+++++++..  .+| +|+||+++.+.|+++||++
T Consensus       252 ~tvsG~V~~P~~~evp~Gt~l~eli~~~gG~~~---~~~~~v~~gG~~~~~~~~~~~~~d-~p~~~~~l~~~g~~lgtg~  327 (438)
T 3i9v_1          252 YQISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLD-TPMSYEHLQAKGSMLGTGG  327 (438)
T ss_dssp             EEEESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHHT-SBCSTTTTGGGSSCCSSSE
T ss_pred             EEECCCCCCCEEEEECCCCCHHHHHHHHCCCCC---CCCEEEEECCCCCCCCCCHHHHCC-CCCCHHHHHHCCCEECCCC
T ss_conf             971576368806996798728999998658766---674399956877664321012126-7674677986297303676


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             7994286528999999999998762799885230289-999999999828999899999999998622366677650247
Q gi|254780858|r  320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA  398 (425)
Q Consensus       320 iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~  398 (425)
                      |+|+|+++||++.+.++++||++||||||+|||+|++ ++.++++++..|+++.+|+++|+++++.|..+|+|+|++.++
T Consensus       328 iivl~~~~~~v~~~~~~~~f~a~ESCgqC~pCr~G~p~~l~~il~~i~~g~~~~~dl~~l~~l~~~i~~~s~C~~~~~a~  407 (438)
T 3i9v_1          328 VILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAV  407 (438)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             32578301489999999875047778999584888699999999999967999899999999997614998267977889


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf             9999998638899999986518999
Q gi|254780858|r  399 WPIQGLIKNFRPLIEERIDQYHRCN  423 (425)
Q Consensus       399 ~pv~s~l~~F~dEfe~hI~~~~rCp  423 (425)
                      +|+.|+|++|++||++|+++ +||-
T Consensus       408 ~pl~s~lr~F~~Ef~a~~~~-kr~~  431 (438)
T 3i9v_1          408 WPVKGSLRHFKDQYLALARE-KRPV  431 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf             99999999989999999974-8999


No 2  
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=91.20  E-value=0.28  Score=27.18  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             EEEECCCCCCCCEEEEEC-CCCCHHHHHHHHHCCCCCCCCCEEEEEE--C---CCCCCCCCCCCCCCCCCCCCCH-HHCC
Q ss_conf             476426788787268935-8987999999861556787110048985--2---4565653210024563342201-1038
Q gi|254780858|r  240 KLFSISGHVNYPCTVEES-MSITFDELIEKHCGGIRGGWDNLLAVIP--G---GSSVPCLPAGQMRGAIMDYDGL-KEMG  312 (425)
Q Consensus       240 kl~tvsG~V~~Pg~~evp-~Gt~l~eli~~~~GG~~~~~~~~kav~~--G---G~~~g~l~~~~ld~~~ld~~~l-~~~G  312 (425)
                      .-++|.|.|.+|+.|+.. -|+||.|.|. .+||+....-..+.|.+  .   ...+.....-+++ . .+..++ .+..
T Consensus       235 ~~v~V~GeV~~pg~~~~~~~~~Tl~dai~-~AGG~~~~~Ad~~~V~viR~~~~~~~~~~~~vy~l~-~-~~~~~~~~a~~  311 (359)
T 2j58_A          235 LKVFVMGEVGKQSTLKMDRSGMTLAEALG-NAEGISQEMSDATGIFVVRQLKGDRTGKIADIYQLN-A-QDASAMVLGTE  311 (359)
T ss_dssp             CEEEEEESBSSCEEEECBTTBCBHHHHHH-HTTCBCTTTEEEEEEEEEEECCSCTTCCCEEEEEEC-C-SBGGGHHHHTT
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCHHHHHH-HCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEC-C-CCHHHHCCCCC
T ss_conf             31465043036753225778988999998-737987344676507999805898765321799952-7-68334031458


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             73466517994286528999999999998762799885230289999999999
Q gi|254780858|r  313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL  365 (425)
Q Consensus       313 s~LGsg~iiV~de~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~~l~~il~~i  365 (425)
                      ..|=.+-+|..+++ .+.++.+.+.++         .|=.-|...+...++++
T Consensus       312 f~L~p~DiVyV~~~-p~~~~~r~i~~~---------~~~~~~~~~~~~~~~~i  354 (359)
T 2j58_A          312 FQLQPYDIVYVTTA-PLVRWNRVISQL---------VPTISGVHDMTETVRYI  354 (359)
T ss_dssp             CBCCTTEEEEEEEC-HHHHHHHHHTTT---------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCC-CCHHHHHHHHHH---------CCCHHHHHHHHHHHHHH
T ss_conf             84389999998798-621689999875---------05227532058889998


No 3  
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=44.96  E-value=2.8  Score=20.36  Aligned_cols=15  Identities=33%  Similarity=0.926  Sum_probs=10.8

Q ss_pred             HCCCCCCCCCHHHHH
Q ss_conf             279988523028999
Q gi|254780858|r  344 SCGQCTPCREGTGWM  358 (425)
Q Consensus       344 SCGkCtPCR~Gt~~l  358 (425)
                      .||+|.||.+=-.-+
T Consensus       197 ~CG~C~~C~~Rr~af  211 (232)
T 2pg3_A          197 GCGQCAACHLRANGL  211 (232)
T ss_dssp             TTSCSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             798897799999999


No 4  
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=41.47  E-value=8.3  Score=17.23  Aligned_cols=12  Identities=17%  Similarity=0.196  Sum_probs=5.6

Q ss_pred             EEEEEE--CCCCCC
Q ss_conf             199985--767784
Q gi|254780858|r   78 HYLVVN--ADESEP   89 (425)
Q Consensus        78 ~yvv~N--~~E~EP   89 (425)
                      |+|++|  |.=|.|
T Consensus        29 K~vll~FwatWC~p   42 (146)
T 1o8x_A           29 KLVFFYFSASWCPP   42 (146)
T ss_dssp             CEEEEEEECTTCHH
T ss_pred             CEEEEEEECCCCHH
T ss_conf             88999998898988


No 5  
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=36.96  E-value=15  Score=15.48  Aligned_cols=14  Identities=29%  Similarity=0.180  Sum_probs=8.7

Q ss_pred             CCCCCCCCCCHHHH
Q ss_conf             30378500028999
Q gi|254780858|r  201 LYGCPTTVNNVESI  214 (425)
Q Consensus       201 l~g~PT~V~NVeTl  214 (425)
                      +.||+.+|+|..|.
T Consensus        30 ~kGKvvll~fwatw   43 (170)
T 2p5q_A           30 FKGKVLLIVNVASK   43 (170)
T ss_dssp             GTTSEEEEEEECSS
T ss_pred             CCCCEEEEEEECCC
T ss_conf             49988999984687


No 6  
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=36.80  E-value=11  Score=16.43  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=7.4

Q ss_pred             EEEEEE--CCCCCCC
Q ss_conf             199985--7677848
Q gi|254780858|r   78 HYLVVN--ADESEPG   90 (425)
Q Consensus        78 ~yvv~N--~~E~EPg   90 (425)
                      |+|++|  |.-|.|.
T Consensus        29 K~vll~FwAtWC~pC   43 (144)
T 1i5g_A           29 KTVFFYFSASWCPPS   43 (144)
T ss_dssp             SEEEEEEECTTCHHH
T ss_pred             CEEEEEEECCCCHHH
T ss_conf             989999987889879


No 7  
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.1
Probab=36.41  E-value=9.1  Score=16.93  Aligned_cols=21  Identities=10%  Similarity=0.134  Sum_probs=13.6

Q ss_pred             CCCCCHHHHHHCCCHHHHHHH
Q ss_conf             767798999977998999999
Q gi|254780858|r   15 LQGKSLSDSMSRGHWDNVDKI   35 (425)
Q Consensus        15 ~~~~~l~~y~~~ggy~~l~~~   35 (425)
                      ..+.+.+.|.+.+....-.+.
T Consensus         9 ~~g~~~~~f~~~~~~~~~~~~   29 (167)
T 1z6n_A            9 DIGEDFAAFVGHGLATEQGAV   29 (167)
T ss_dssp             HHSBCHHHHHHTSCHHHHHHH
T ss_pred             HHCCCHHHHHHHCCHHHHHHH
T ss_conf             937589999862034655333


No 8  
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=34.38  E-value=9.2  Score=16.92  Aligned_cols=18  Identities=22%  Similarity=0.628  Sum_probs=11.6

Q ss_pred             HCCCCCCCCCHHHHHHHH
Q ss_conf             279988523028999999
Q gi|254780858|r  344 SCGQCTPCREGTGWMMRV  361 (425)
Q Consensus       344 SCGkCtPCR~Gt~~l~~i  361 (425)
                      .||+|.+|.+=-.-..+-
T Consensus       194 ~CG~C~~C~~R~~af~e~  211 (219)
T 3bl5_A          194 GCGECPACHLRSKGYEEY  211 (219)
T ss_dssp             CCSCSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             897786089899999999


No 9  
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=33.11  E-value=21  Score=14.56  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=38.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             998852302899999999998289998999-9999999862236667765024799999986388999999865
Q gi|254780858|r  346 GQCTPCREGTGWMMRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ  418 (425)
Q Consensus       346 GkCtPCR~Gt~~l~~il~~i~~G~a~~~Dl-~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~  418 (425)
                      +.|.-|+....++.+++    ..+.+.+++ +.+.+++..++.        .....-.+++..|-+.+...|..
T Consensus         3 ~~C~~C~~~v~~~~~~l----~~~~t~~~I~~~l~~~C~~lp~--------~~~~~C~~~v~~y~~~ii~~l~~   64 (80)
T 3bqp_A            3 GFCEVCKKLVGYLDRNL----EKNSTKQEILAALEKGCSFLPD--------PYQKQCDQFVAEYEPVLIEILVE   64 (80)
T ss_dssp             TTHHHHHHHHHHHHHHS----CTTCCHHHHHHHHHHHGGGSCG--------GGHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             81278899999999998----6577599999999999875797--------20420099999879999999995


No 10 
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=32.59  E-value=21  Score=14.50  Aligned_cols=24  Identities=8%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             HHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf             999999826989999999983977
Q gi|254780858|r   30 DNVDKILEKGRDWIINEVKASGLR   53 (425)
Q Consensus        30 ~~l~~~l~~~~~~ii~~v~~sgl~   53 (425)
                      +.|.+.+.++++.+++++++|||.
T Consensus         6 k~lA~~v~~~vd~LL~Ql~~AGi~   29 (49)
T 1nd9_A            6 KTLAAERQTSVERLVQQFADAGIR   29 (49)
T ss_dssp             THHHHHHSSSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             999999894999999999991899


No 11 
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=32.32  E-value=21  Score=14.47  Aligned_cols=19  Identities=5%  Similarity=0.191  Sum_probs=9.7

Q ss_pred             CCHHHHHHC-------CCHHHHHHHH
Q ss_conf             798999977-------9989999998
Q gi|254780858|r   18 KSLSDSMSR-------GHWDNVDKIL   36 (425)
Q Consensus        18 ~~l~~y~~~-------ggy~~l~~~l   36 (425)
                      ..+++.++.       .||+.+-+++
T Consensus       124 ~~i~~al~g~~nlCRCTGY~~I~~Av  149 (907)
T 1dgj_A          124 EDVRDWFQKHHNICRCTGYKPLVDAV  149 (907)
T ss_dssp             HHHHHHHHHTTCCCSSSCSHHHHHHH
T ss_pred             HHHHHHHCCCCCEECCCCCHHHHHHH
T ss_conf             99999864996342266888999999


No 12 
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=27.59  E-value=15  Score=15.42  Aligned_cols=12  Identities=17%  Similarity=0.108  Sum_probs=6.4

Q ss_pred             EEEEEE--CCCCCC
Q ss_conf             199985--767784
Q gi|254780858|r   78 HYLVVN--ADESEP   89 (425)
Q Consensus        78 ~yvv~N--~~E~EP   89 (425)
                      |.||+|  +..|.|
T Consensus        34 k~vvl~FwatwCp~   47 (188)
T 2cvb_A           34 PLLAVVFMCNHCPY   47 (188)
T ss_dssp             SEEEEEEECSSCHH
T ss_pred             CEEEEEEECCCCCC
T ss_conf             95999998989974


No 13 
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=27.06  E-value=26  Score=13.88  Aligned_cols=13  Identities=38%  Similarity=0.483  Sum_probs=6.3

Q ss_pred             CCCCCCCCCCHHH
Q ss_conf             3037850002899
Q gi|254780858|r  201 LYGCPTTVNNVES  213 (425)
Q Consensus       201 l~g~PT~V~NVeT  213 (425)
                      +-||+.+|+|..|
T Consensus        46 ~kGKvvli~f~as   58 (190)
T 2vup_A           46 HKGSPLLIYNVAS   58 (190)
T ss_dssp             GTTSCEEEEEECS
T ss_pred             CCCCEEEEEEEEC
T ss_conf             2998899999715


No 14 
>3o2q_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, scaffold, phosphatase, polymerase II CTD, CIS-P hydrolase; HET: SEP; 2.40A {Homo sapiens} PDB: 3o2s_B
Probab=25.81  E-value=27  Score=13.73  Aligned_cols=53  Identities=19%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCHHHHHHHH
Q ss_conf             028999999999960568886338987743047642678-8787268935898799999986
Q gi|254780858|r  209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH  269 (425)
Q Consensus       209 ~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gtkl~tvsG~-V~~Pg~~evp~Gt~l~eli~~~  269 (425)
                      |+=.++-+=..+-+.| -.-+++|+..     -+-+-|. ..+|.+|..  |||..++.+++
T Consensus        35 N~NRSMEAH~~L~k~G-~~V~SfGTGs-----~VkLPGps~d~PnvY~F--gT~Y~~iy~dL   88 (214)
T 3o2q_B           35 NQNRSMEAHNILSKRG-FSVRSFGTGT-----HVKLPGPAPDKPNVYDF--KTTYDQMYNDL   88 (214)
T ss_dssp             SSSHHHHHHHHHHHTT-CEEEEEECSS-----SEEECCSSTTCCEEECT--TSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCC-CCEEEECCCC-----CCCCCCCCCCCCCEECC--CCCHHHHHHHH
T ss_conf             7644899999999879-9647305886-----32578999999962079--99899999999


No 15 
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycoprotein; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=25.52  E-value=28  Score=13.70  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=17.3

Q ss_pred             CCCEEEEEECCCCH---------HHHHHHHHHHHHHHHCCC
Q ss_conf             83638998155517---------899999999999986899
Q gi|254780858|r  117 GAHCAFIYVRGEFI---------RERESLQAAVDECYASGL  148 (425)
Q Consensus       117 gA~~~~I~ir~ey~---------~~~~~l~~ai~ea~~~g~  148 (425)
                      |-.-+.+=|+.||.         ...+-|+..-+.|+++|+
T Consensus       149 GGPIIl~QiENEY~~~~~~~~~~~~~~Ym~~L~~~ar~~Gi  189 (971)
T 1tg7_A          149 GGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGI  189 (971)
T ss_dssp             TSSEEEECCSSCCCCBCTTCCCCSCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99289999666778744555688718999999999997199


No 16 
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii atcc 33406}
Probab=24.98  E-value=28  Score=13.63  Aligned_cols=10  Identities=10%  Similarity=0.384  Sum_probs=5.5

Q ss_pred             CEEEEECCCC
Q ss_conf             3047642678
Q gi|254780858|r  238 GTKLFSISGH  247 (425)
Q Consensus       238 Gtkl~tvsG~  247 (425)
                      +..+++||-+
T Consensus        64 ~~~~i~is~d   73 (148)
T 3hcz_A           64 GIQVYAANIE   73 (148)
T ss_dssp             TEEEEEEECC
T ss_pred             CCEEEEEECC
T ss_conf             7517998789


No 17 
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=24.87  E-value=23  Score=14.23  Aligned_cols=12  Identities=17%  Similarity=0.191  Sum_probs=7.3

Q ss_pred             EEEEEE--CCCCCC
Q ss_conf             199985--767784
Q gi|254780858|r   78 HYLVVN--ADESEP   89 (425)
Q Consensus        78 ~yvv~N--~~E~EP   89 (425)
                      |+|++|  |.-|-|
T Consensus        29 K~vvl~FwatwC~~   42 (144)
T 1o73_A           29 KTVFLYFSASWCPP   42 (144)
T ss_dssp             CEEEEEEECTTCHH
T ss_pred             CEEEEEEECCCCCC
T ss_conf             87999999788855


No 18 
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=22.50  E-value=31  Score=13.32  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=16.3

Q ss_pred             EEECCCCCHHH--HHHHHHHHHHHHHCCCCCCC
Q ss_conf             99428652899--99999999987627998852
Q gi|254780858|r  321 IVMDRSTDIIK--AIWRLSVFYKHESCGQCTPC  351 (425)
Q Consensus       321 iV~de~~~iv~--~~~~~~~F~a~ESCGkCtPC  351 (425)
                      .++|+..|-.+  .++..+--.-..+|++|||=
T Consensus        29 Clld~gpCt~egk~lK~~lPeal~t~C~KCt~k   61 (112)
T 1k19_A           29 CVMERGKCSPEGKELKEHLQDAIENGCKKCTEN   61 (112)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSH
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             970689998779999999799986236689999


No 19 
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=21.70  E-value=32  Score=13.21  Aligned_cols=12  Identities=42%  Similarity=0.401  Sum_probs=5.3

Q ss_pred             CCCCCCCCCHHH
Q ss_conf             037850002899
Q gi|254780858|r  202 YGCPTTVNNVES  213 (425)
Q Consensus       202 ~g~PT~V~NVeT  213 (425)
                      -||+.+|+|..|
T Consensus        46 kGKvvli~F~at   57 (183)
T 2obi_A           46 RGFVCIVTNVAS   57 (183)
T ss_dssp             TTSEEEEEEECS
T ss_pred             CCCEEEEEEECC
T ss_conf             998899999868


Done!